name	gene_model_type	short_description	Curator_summary	Computational_description
AAN	unknown		Putative QTL with a period-lengthening effect of about 1 h	
ACL1	unknown		Mutants are defective in leaf and inflorescence meristem. Cauline leaves are small and twisted in appearance. Meristem is smaller in diameter and terminates early so the plants produce fewer flowers.	
ACL2	unknown		Loss of function mutants have reduced internode length.	
ACL3	unknown		Loss of function mutants have reduced internode length and smaller leaves. May be involved in cell elongation. acl3-1 allele can be suppressed by growth at 28C. In mutant plants, expression of endoxyloglucan transferase is decreased.	
ADD1	unknown		Temperature-sensitive gene required for normal shoot apical meristem function	
AGE1	unknown		Mutant shows an altered pattern of auxin-responsive gene expression and has a short, bushy growth habit with pale leaves and cotyledons	
AGE2	unknown		Involved in the regulation of gene expression in response to IAA.	
AGI1	unknown		A genetic locus involved in regulation of glutathione S-transferase 1.	
ALB2	unknown		A genetic locus involved in chloroplast or chlorophyll development.	
ALF3	unknown		alf3-1 is defective in the maturation of lateral roots	
ALS4	unknown		a genetic locus involved in response to aluminum. Lines carrying recessive mutations appear to accumulate less aluminum and callose than wild type. This locus is mapped to chromosome 5 near SSLP marker nga151.	
AND	unknown		ANDANTE, QTL for circadian period.	
ANL1	unknown		A genetic locus involved in anthocyanin production. An EMS mutant lacks anthocyanin in vegetative tissues.	
ART1	unknown		A late-flowering locus isolated from the Sy-O ecotype that maps on chromosome 5, between the ms1 and ttg visible markers in a genomic interval defined by the MYJ24 and MKD15 BACs. Phenotype of the dominant allele requires the presence of another dominant allele, FLC. ART1 activates FLC which is a floral repressor.	
BGL	unknown		partially divided guard cell	
BOD1	unknown		Identified in a screen using segregation distortion to uncover gametophyte mutations. Pollen grains from heterozygous BOD1 plants are abnormal  and embryo sacs are occasionally absent.	
BOD2	unknown		Identified in a screen using segregation distortion to uncover gametophyte mutations. Pollen grains from heterozygous BOD2 plants plants are abnormal  and embryo sacs are occasionally absent.	
BOD3	unknown		Both male and female gametophytic defective 3.Identified in a EMS screen using segregation distortion to uncover gametophyte mutations. Pollen grains from heterozygous BOD3 plants are abnormal and embryo sacs are occasionally absent.	
CAR1	unknown		cauliflower mosaic virus resistance1	
CAT4	protein_coding			
CH12	unknown			
CH13	unknown			
CH17	unknown			
CH5	unknown		ch5 mutant is characterized by chlorophyll deficiency	
CH6	unknown		Paler green embryos and green-yellow plants	
CHL2	unknown		Putative nitrate reductase.	
CHL4	unknown		Nitrate assimilation	
CHL5	unknown		A genetic locus required for the synthesis of a molybdenum cofactor (MoCo) required for nitrate reductase activity.	
CHP7	unknown		A genetic locus involved in chlorophyll development. Mutants are pale green. This mutation delays flowering time but not leaf number.	
CHVI3	unknown			
CP1	unknown		semi-dwarf mutant	
CP2	unknown		lines carrying recessive mutations in this genetic locus are compact and semi-dwarf.	
CP3	unknown		dwarf mutant compacta 3 negatively regulates the phytochrome A signalling pathway	
CPR6	unknown		Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance --SAR).	
CSI	unknown		Mutant is insensitive to cesium, has potassium uptake defect.	
CUD	unknown		involved in root hair development, cell expansion, cell division, cell polarity. cud-1 allele is dominant and male-sterile, X-ray induced in Col.	
CYD1	unknown		Required for the execution of cytokinesis throughout the shoot. Effects are seen in both mature vegetative and reproductive organs.	
DAR	protein_coding		Some inflorescence internodes lacking, aerial rosettes, shoot apical meristem consumed in floral structures after about 10 nodes, low apical dominance, distorted leaf morphology, pale green, abnormal stamen development	
DOC2	unknown		Mutations in this gene have aberrant regulation of CAB3 gene expression, they overexpress CAB3 in the dark.	
DOC3	protein_coding		mutant allowing derepression of CAB expression in dark-grown seedlings.	
DTH2	unknown		dth mutants are deregulated in the control of expression of CEVI-1 gene.	
DWF8	protein_coding		Genetic locus involved in a late step of brassinosteroid biosynthesis.  Maps to the bottom of chromosome 1.	
EDS3	unknown		Required for resistance to some pathogenic bacteria. Mutants are more susceptible to Peronospora parasitica and Pseudomonas syringae but not to Erysiphe orontii.	
EDS8	unknown		Mutant has compact rosette and serrated leaves.  Involved in disease resistance.	
EDS9	unknown		enhanced disease susceptibility 9	
EGS1	unknown		a genetic locus involved in silencing of transgenes. Mutants carrying a recessive allele enhances the silencing of 35S::rolB transgene in Arabidopsis.	
EMB1	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB10	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB105	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB106	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Embryo shape at seed maturity is globular-heart.	
EMB108	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB109	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB110	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB111	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Embryo shape at seed maturity is globular-elongate.	
EMB115	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB117	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Embryo shape at seed maturity is globular.	
EMB118	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB120	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB122	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB123	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB125	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB126	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB128	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB129	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB130	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB131	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB132	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB135	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB137	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB141	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB145	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB146	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB148	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB149	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB15	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB150	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB151	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs. Ambiguous genetic location (chr 3 and 5)	
EMB152	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB153	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB154	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB160	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB163	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB167	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB17	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB170	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB171	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB172	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB176	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB179	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB18	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Embyro shape at seed maturity is globular.	
EMB180	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB181	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB19	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Embryo shape at seed maturity is globular-heart.	
EMB2	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB20	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB201	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB202	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB208	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB209	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB210	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB215	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB222	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB223	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB224	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB225	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Embryo shape at seed maturity is small globular.	
EMB230	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB232	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB233	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB236	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB237	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB239	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB244	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Embryo shape at seed maturity is small globular.	
EMB256	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB257	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB262	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB266	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality but is tolerant to desiccation.	
EMB27	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB270	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB274	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB277	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB28	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB286	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB287	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB29	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB290	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB293	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB31	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB34	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB35	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB38	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB39	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB41	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB43	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB51	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB52	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB53	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB54	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants can be complemented by Arabidopsis arenosa.	
EMB56	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB57	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB58	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB59	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB62	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB65	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB66	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB67	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB68	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB69	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB7	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB70	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB77	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB79	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB81	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB83	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB84	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Embryo shape at maturity is globular.  The mutant line emb84 appears to contain a chromosomal location and is linked to both chromosomes 3 and 4.	
EMB87	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB89	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB90	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs.	
EMB91	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMB94	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Mutants in this gene are not nutrient auxotrophs. Ambiguous genetic location (chr 2 and 5)	
EMB95	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMBRG2	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMBRG3	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMBRG4	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMBRG5	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	
EMBRG7	unknown			
ERG1	protein_coding			
ERT	protein_coding			
ESP	unknown		a QTL involved in control of circadian rhythm	
FE	unknown		Mutant has late flowering phenotype that is responsive to vernalization and minimally responsive to R:FR treatment.	
FED	unknown			
FL	unknown			
FOR	protein_coding			
GF	unknown		mutant is affected in the early steps of megagametogenesis	
GHA	protein_coding			
GLD1	protein_coding		Photorespiratory mutant, phenotype is consistent with a mutation in a gene encoding a subunit of glycine decarboxylase, or in a gene involved in transport of glycine into the mitochondrion	
GLD2	protein_coding		photorespiratory mutant	
GMB	protein_coding			
GR2	unknown			
HXC1	unknown			
HYA	unknown		mapped mutation, involved in cytokinesis	
HYP	unknown		From Meike's Gene Symbol list.  No further data available.	
IAE1	unknown		a genetic locus involved in Ac/Ds transposable element excision in Arabidopsis. Lines carrying semi-dominant mutation exhibit increased frequency of somatic excision.  iae mutants represent a possible means of improving the efficiency of Ac/Ds transposon tagging systems in Arabidopsis	
ICR1	unknown		Mutant is resistant to growth inhibition by IAA-Phe.  This resistance does not appear to be due to reduced uptake of IAA-Phe, nor to a decreased hydrolysis of IAA-Phe.	
ICR2	unknown		Mutation in this locus leads to resistance to growth inhibition by indole-3-acetic acid (IAA)-phenylalanine. Mutants are more resistant than wild type to inhibition by IAA-phenylalanine, IAA-alanine, and IAA-glycine in root growth assays.	
ICX	unknown		Isolated in a screen for mutants having increased levels of chalcone synthase gene expression in the light. Mutants also have defects in epidermal cell characters such as reduced trichome number and abnormal seed coats.	
IMP	unknown			
IVF	protein_coding			
JBA	unknown		A genetic locus involved in establishing or maintaining shoot apical meristem (SAM) activity and lateral organ polarity. Lines carrying mutations in this gene have enlarged SAMs and fasciated stems. In addition, expression of microRNA166g.	
KIM	protein_coding		Root hair defective mutant	
LAB	unknown		Late flowering mutant from activation tagged line using double CaMV 35S promoter. Phenotype may be due to overexpression of ANL2 which is located 2 kb downstream of the insertion site.	
LAD	protein_coding		A genetic locus involved in anther dehiscence. Mutants exhibit delayed anther dehiscence and breakdown of call walls anther septum cells. The gene is apparently cloned and encodes a protein with homology to MYC proteins, containing an acidic domain and a basic helix-loop-helix domain.	
LAN	unknown			
LEM7	unknown		leaf morphogenesis 7, a semidominant temperature-sensitive mutation.	
LIT	unknown		The LIT (lion’s tail) mutation causes abnormal root cell expansion which is conditional upon the rate of root growth. Expansion is greatest in the stele cells.	
LU	unknown		mutant has a dwarf phenotype. visible marker, not cloned	
MAD1	unknown		Mutants have pollen defects, affected at the tricellular stage. Gene is probably involved in cell and/or nuclear division at mitosis II of pollen development.	
MAD2	unknown		Male gametophytic defective 2.Identified in a EMS screen using segregation distortion to uncover gametophyte mutations.	
MAD3	unknown		Effects male gametophyte development. The primary effect appears to be in the formation of intine walls.	
MAD4	unknown		Male gametophytic defective 4. Mutant affects the function of the pollen or pollen tube during the fertilization process.	
MAL1	unknown		mutant has defect in chloroplast development, variegated foliage leaves, sepals, stems	
MER	unknown			
MGL1	unknown			
MGL2	unknown			
MGL3	unknown			
MIN	unknown		Mutant is semi-dwarf with gray-green leaves	
MS31	unknown		A genetic locus involved in male gametophyte development	
MS32	unknown		male-sterile 32 exhibiting abnormal callose deposition	
MS33	unknown		Recessive mutant is male sterile and has reduced filament length and defective in pollen maturation. Reduced filament length is correlated with decreased filament epidermal cell size. Pollen have defective intine and tryphine deposition and enlarged vacuoles and are not viable.	
MS37	unknown		uncharacterized gene involved in male gametogenesis	
MUS	unknown		Mutants have abnormally shaped guard cells, absent or skewed stomatal pores. MUS may regulate aspects of stomatal morphogenesis.	
NOT	unknown		NOT is a QTL affecting the period circadian rhythm. The Cape Verdi Islands (Cvi) allele has a shortening of period relative to Ler allele.	
ORE-6	unknown		A genetic locus involved in senescence of many tissues.	
PAD1	unknown		Phytoalexin deficient mutant with enhanced susceptibility to the bacterial pathogen Pseudomonas syringae	
PAD5	unknown		Identified as a mutant with reduced phytoalexin content. Unlike other pad mutants pad5 does not confer enhanced susceptibility to the bacterial pathogen Pseudomonas syringae pv. maculicola strain ES4326.	
PET1	unknown		required for cell elongation and correct hypocotyl cell wall structure in the presence of sucrose	
PMD	unknown		A dominant allele in Landsberg erecta, which induces petal initiation of the petal loss (ptl) mutant background. In ptl mutant, the dominant allele suppresses the organ initiation in the second whorl but does not suppress the orientation of the organ development.	
POP3	unknown		Genetically redundant with POP2;mediates pollen tube guidance. Double mutants are self sterile.	
QUI	unknown		A genetic locus involved in root cell elongation.	
RAL	unknown		QTL located at the bottom of chromosome 5 (about 95 cM) that affects the circadian period of leaf movement in two Arabidopsis RIL populations (Ler/Cvi). It is not allelic to TOC1.	
RAT1	unknown		a genetic locus involved in resistance to Agrobacterium transformation. Lines carrying semi-dominant mutations are defective in Agrobacterium attachment to the root.	
RAT3	unknown		a genetic locus involved in resistance to Agrobacterium transformation. Lines carrying semi-dominant mutations are defective in Agrobacterium attachment to the root.	
RFI	unknown		Mutants display overbranched, more heavily clustered trichomes (majority with 4 branches, at least some with 5 branches) with more nuclear DNA than wild type. The gene maps near GL5 so rfi mutant may be gain-of-function mutation of GL5.	
RHG	unknown		Involved in root and hypocotyl gravitropism	
RML2	unknown		Required for cell proliferation at the root tip.	
ROT1	unknown		A genetic locus involved in leaf development. Mutants have short and round leaves and petioles and also less number of leaves than wild type.	
RPP10	unknown		resistance to Peronospora parasitica 10 (RPP10) confers resistance to Peronospora parasitica in different ecotypes. Genes similar in sequence to RPS2/N map near this genetically defined locus.	
RPP11	unknown		Disease resistance locus isolated in RLD that confers resistance to Peronospora parasitica. May be allelic to the RPP13 locus in Nd.	
RPP12	unknown		disease resistance locus studied in the Ws ecotype, confers resistance to Peronospora parasitica (downy mildew).	
RPP2	unknown		Confers resistance to Peronospora parasitica. Maps to chromosome 4 of Arabidopsis between the molecular markers g3883 and JGB9.	
RPP6	unknown		A genetic locus in Columbia accession, which confers resistance to a downy mildew isolate (Wela3 isolate of Peronospora parasitica).	
RPP9	unknown		disease resistance locus. Confers resistance to peronospora parasitica.	
RPW1	unknown		A genetic locus that confers resistance to powdery mildew fungi.	
RPW5	unknown		A genetic locus that confers resistance to powdery mildew fungi.	
RPW6	unknown		disease resistance gene, dominant locus	
RRS2	unknown		Confers resistant to Ralstonia solanacearum.	
RTN	unknown		Affects the initiation of trichomes.	
RXC1	unknown		Confers resistant to Xanthomonas campestris pv. campestris. May be the same as RXC4.	
RXC3	unknown		RXC3, in conjunction with RXC4, confers digenic resistance to X. c.campestris	
RXC4	unknown		RXC4, in conjunction with RXC3, confers digenic resistance to X. c. campestris	
SAS1	unknown		Genetic locus involved in control of the radial transport of Na(+) from the soil solution to the xylem vessels.   It maps to the bottom of chr. 3.  Mutants display a pleiotropic phenotype including severe growth reduction.	
SEL2	unknown			
SHA	unknown		The shabondama1 mutant have round guard cells instead of kidney-shaped.	
SIN2	unknown		SIN2 regulates cell division in the integuments and affects the development of pistil and sepals.	
SMA4	unknown			
SRB	unknown		involved in shoot and root morphogenesis	
SRD1	unknown		Mutants are defective in shoot redifferentiation of root explants.	
SRD3	unknown		Identified as a temperature sensitive mutant defective in shoot regeneration from root explants in tissue culture.	
SSA-2	unknown		Mutant is super sensitive to auxin.	
STP1	unknown		Required for cell expansion in rapidly elongating but not in dividing cells, and for cytokinin-mediated root growth. 30% recombination to nga168.	
SU(RGN)	unknown		suppressor gene of rgn mutation	
SUL	unknown			
SUS3	unknown		a genetic locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Embryo shape at seed maturity is elongate.	
SVN	unknown		Lines carrying a recessive allele of this locus exhibit spontaneous hypersensitive-response (HR) like response and programmed cell death in the vascular system. The gene is reported in an abstract to have been cloned with no sequence homology to known proteins.	
TAI224	protein_coding			
TAX	unknown		From Meinke's Gene Symbol list.  No further information.	
TED2	unknown		TED2 is a dominant, extragenic suppressor of det1. Has one dominant allele ted2-1D from suppressor screen of EMS mutagenized det1.	
TH3	unknown			
TIR4	unknown		Mutants have altered response to auxin polar transport inhibitors	
TIR6	unknown		Mutants have altered response to auxin polar transport inhibitors	
TIR7	unknown		Mutants in this gene are deficient in anthranilate synthase and has lower auxin levels in the root. Double mutants of tir7 tir2 show sever defects in root meristem organization.	
TOC2	unknown		A recessive mutation that affects the circadian control of CAB gene expression	
TTN2	unknown		ttn2 is required for progression through the mitotic cell cycle during seed development.  TTN2 mutant embryo is composed of several small cells. Condensed chromosomes arrested at prophase of mitosis are found in the free nuclear endosperm of ttn2 seeds.	
TWN1	unknown		A genetic locus required for suppressing embryogenic development in suspensor cells. twn1 mutants produce supernumerary embryos via suspensor transformation.	
UVR4	unknown		A genetic locus involved in response to UV-B. Mutants are more sensitive to UV-B than wild type.	
UVR5	unknown		A genetic locus involved in dark repair of UV-induced pyrimidine [6-4] pyrimidinone  dimers. Mutants are also sensitive to the effects of gamma radiation on the production of new leaves while roots are not affected.	
VAL1	unknown			
VIR2	unknown			
VR2	unknown			
VTC3	unknown		A genetic locus involved in the metabolism, more likely synthesis, of ascorbic acid (vitamin C). Mutants accumulate significantly less amount of ascorbic acid than wild type and are slightly more sensitive to ozone. Preliminary analyses suggest a defect in the conversion of mannose to ascorbic acid.	
WHG	unknown		a genetic locus involved in vascular tissue development. Mutants in this locus have large masses of misshapen vascular cells, which accumulate near the leaf margins.	
XV	unknown		between ch-gi, 3.5 m.u. from gi.	
YAK	unknown			
YI	unknown		a genetic locus that produces yellow fluorescence when mutated.	
AT1G75800.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT1G75690.1	protein_coding	DnaJ/Hsp40 cysteine-rich domain superfamily protein		DnaJ/Hsp40 cysteine-rich domain superfamily protein;(source:Araport11)
AT1G75680.1	protein_coding	glycosyl hydrolase 9B7		glycosyl hydrolase 9B7;(source:Araport11)
AT1G75770.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G75550.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT1G75660.1	protein_coding	5'-3' exoribonuclease 3	Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.	5-3 exoribonuclease 3;(source:Araport11)
AT1G75760.1	protein_coding	ER lumen protein retaining receptor family protein		ER lumen protein retaining receptor family protein;(source:Araport11)
AT1G75540.1	protein_coding	salt tolerance homolog2	Encodes a B-box zinc finger transcription factor BBX21 (also named STH2/salt tolerance homolog2 and LHUS/long hypocotyl under shade).  Interacts with COP1 to control de-etiolation.  Also genetically interacts with COP1 to regulate shade avoidance. The mRNA is cell-to-cell mobile.	salt tolerance homolog2;(source:Araport11)
AT1G75640.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Encodes a Leucine-Rich Repeat Receptor-Like Kinase MUSTACHES (MUS).  Regulates stomatal bilateral symmetry.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT1G75750.1	protein_coding	GAST1 protein homolog 1	GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically.  Possibly involved in cell elongation based on expression data The mRNA is cell-to-cell mobile.	GAST1 protein homolog 1;(source:Araport11)
AT1G75610.1	pseudogene			pseudogene of Histone superfamily protein;(source:Araport11)
AT1G75530.1	protein_coding	Forkhead-associated (FHA) domain-containing protein 		Forkhead-associated (FHA) domain-containing protein;(source:Araport11)
AT1G75630.1	protein_coding	vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4	vacuolar H+-pumping ATPase 16 kD proteolipid (ava-p) mRNA, The mRNA is cell-to-cell mobile.	vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4;(source:Araport11)
AT1G75730.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G75620.1	protein_coding	glyoxal oxidase-related protein		glyoxal oxidase-related protein;(source:Araport11)
AT1G75720.1	protein_coding	Plant protein of unknown function (DUF827)		WEB family protein (DUF827);(source:Araport11)
AT1G75600.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT1G75710.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT1G75590.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G75700.1	protein_coding	HVA22-like protein G		HVA22-like protein G;(source:Araport11)
AT1G75490.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G75580.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G75560.1	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT1G75670.1	protein_coding	DNA-directed RNA polymerases		DNA-directed RNA polymerase;(source:Araport11)
AT1G14710.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G14910.1	protein_coding	ENTH/ANTH/VHS superfamily protein		ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT1G14820.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G14690.1	protein_coding	microtubule-associated protein 65-7		microtubule-associated protein 65-7;(source:Araport11)
AT1G14700.1	protein_coding	purple acid phosphatase 3		purple acid phosphatase 3;(source:Araport11)
AT1G14920.1	protein_coding	GRAS family transcription factor family protein	Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.	GRAS family transcription factor family protein;(source:Araport11)
AT1G14730.1	protein_coding	Cytochrome b561/ferric reductase transmembrane protein family		Cytochrome b561/ferric reductase transmembrane protein family;(source:Araport11)
AT1G14930.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G14880.1	protein_coding	PLANT CADMIUM RESISTANCE 1		PLANT CADMIUM RESISTANCE 1;(source:Araport11)
AT1G14870.1	protein_coding	PLANT CADMIUM RESISTANCE 2	PCR2 encodes a membrane protein involved in zinc transport and detoxification.	PLANT CADMIUM RESISTANCE 2;(source:Araport11)
AT1G14830.1	protein_coding	DYNAMIN-like 1C	Encodes a dynamin-like protein that is involved in mitochondrial morphogenesis and pollen development. Protein is localized as speckles in the cytoplasm, partially co-localizes with mitochondrial markers, cell plate of dividing cells, and the tip of root hairs, root cap cells, and expanding part of trichoblasts.	DYNAMIN-like 1C;(source:Araport11)
AT1G14760.1	protein_coding	KNOX Arabidopsis thaliana meinox	Encodes a novel Arabidopsis KNOX gene that encodes a MEINOX domain but lacks the homeodomain and interacts with TALE-class homeodomain proteins to modulate their activities	KNOX meinox protein;(source:Araport11)
AT1G14840.1	protein_coding	microtubule-associated proteins 70-4	Encodes a microtubule associated protein (MAP70-4). Expressed in all tissues.	microtubule-associated proteins 70-4;(source:Araport11)
AT1G14770.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G14940.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G14850.1	protein_coding	nucleoporin 155	Encodes a protein similar to nucleoporin, a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport	nucleoporin 155;(source:Araport11)
AT1G14780.1	protein_coding	MAC/Perforin domain-containing protein		MAC/Perforin domain-containing protein;(source:Araport11)
AT1G14950.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G14860.1	protein_coding	nudix hydrolase homolog 18		nudix hydrolase homolog 18;(source:Araport11)
AT1G14790.1	protein_coding	RNA-dependent RNA polymerase 1	Encodes RNA-dependent RNA polymerase.   While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.	RNA-dependent RNA polymerase 1;(source:Araport11)
AT1G14750.1	protein_coding	Cyclin family protein	Encodes a meiotic cyclin-like protein, distinct from all other known Arabidopsis cyclins.  It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome.	Cyclin family protein;(source:Araport11)
AT1G14960.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G14740.1	protein_coding	Protein of unknown function (DUF1423)	Encodes a PHD-finger protein that, with TTA1, is redundantly required for MP-dependent embryonic root meristem initiation.	class I heat shock protein, putative (DUF1423);(source:Araport11)
AT1G14890.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G14800.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G14720.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 28	member of Glycoside Hydrolase Family 16	xyloglucan endotransglucosylase/hydrolase 28;(source:Araport11)
AT1G14900.1	protein_coding	high mobility group A	Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA.	high mobility group A;(source:Araport11)
AT1G14810.1	protein_coding	semialdehyde dehydrogenase family protein	encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis	semialdehyde dehydrogenase family protein;(source:Araport11)
AT1G33420.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G33430.1	protein_coding	Galactosyltransferase family protein	UPEX1 is arabinogalactan b-(1,3)-galactosyltransferase involved in the formation of pollen exine. Belongs to GT31 family. Mutants have reduced levels of AGPs.	Galactosyltransferase family protein;(source:Araport11)
AT1G33530.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G33440.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G33540.1	protein_coding	serine carboxypeptidase-like 18		serine carboxypeptidase-like 18;(source:Araport11)
AT1G33450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04780.2);(source:TAIR10)
AT1G33460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.6e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G33570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 4.6e-16 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT1G33470.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G33480.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G33400.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G33490.1	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT1G33410.1	protein_coding	SUPPRESSOR OF AUXIN RESISTANCE1		SUPPRESSOR OF AUXIN RESISTANCE1;(source:Araport11)
AT1G33500.1	protein_coding			tropomyosin;(source:Araport11)
AT1G33520.1	protein_coding	D111/G-patch domain-containing protein	Has single homolog in Arabidopsis, also homologs in human, mouse and C. elegans; contains one G-patch domain (known to mediate RNA-protein interactions) and two KOW domains (may bind RNA and/or protein); localized to the nucleus; mutant suppresses high SA levels and constitutive disease resistance in snc1 npr1 background; required for basal resistance against Pseudomonas syringae maculicola ES4326 and R gene-mediated resistance specified by RPM1, PPS4 and RPP4;	D111/G-patch domain-containing protein;(source:Araport11)
AT1G69310.1	protein_coding	WRKY DNA-binding protein 57	Encodes WRKY57, a member of the WRKY Transcription Factor. Activation of WRKY57 confers drought tolerance.	WRKY DNA-binding protein 57;(source:Araport11)
AT1G69430.1	protein_coding			Son of sevenless protein;(source:Araport11)
AT1G69530.1	protein_coding	expansin A1	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A1;(source:Araport11)
AT1G69440.1	protein_coding	Argonaute family protein	Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391.   Localized in mature rosette leaves and floral buds.	Argonaute family protein;(source:Araport11)
AT1G69550.1	protein_coding	disease resistance protein (TIR-NBS-LRR class)		disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G69450.1	protein_coding	Early-responsive to dehydration stress protein (ERD4)		Early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT1G69470.1	protein_coding			heat shock protein-binding protein;(source:Araport11)
AT1G69480.1	protein_coding	EXS (ERD1/XPR1/SYG1) family protein		EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT1G69490.1	protein_coding	NAC-like, activated by AP3/PI	Encodes a member of the NAC transcription factor gene family.  It is expressed in floral primordia and upregulated by AP3 and PI.  Its expression is associated with leaf senescence. The mRNA is cell-to-cell mobile.	NAC-like, activated by AP3/PI;(source:Araport11)
AT1G69500.1	protein_coding	cytochrome P450, family 704, subfamily B, polypeptide 1	Encodes a cytochrome P450, designated CYP704B1. Expressed in the developing anthers.  Essential for pollen exine development. Mutations in CYP704B1 result in impaired pollen walls that lack a normal exine layer and exhibit a characteristic striped surface, termed zebra phenotype. Heterologous expression of CYP704B1 in yeast cells demonstrated that it catalyzes omega-hydroxylation of long-chain fatty acids, implicating these molecules in sporopollenin synthesis.	cytochrome P450, family 704, subfamily B, polypeptide 1;(source:Araport11)
AT1G69540.1	protein_coding	AGAMOUS-like 94	Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators.	AGAMOUS-like 94;(source:Araport11)
AT1G69510.1	protein_coding	cAMP-regulated phosphoprotein 19-related protein		cAMP-regulated phosphoprotein 19-related protein;(source:Araport11)
AT1G69460.1	protein_coding	emp24/gp25L/p24 family/GOLD family protein		emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT1G69520.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G49800.1	protein_coding		Homolog of PIP1.	transmembrane protein;(source:Araport11)
AT1G49810.1	protein_coding	Na+/H+ antiporter 2	member of Na+/H+ antiporter-Putative family	Na+/H+ antiporter 2;(source:Araport11)
AT1G49910.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a homolog of the yeast and human BUB3 (BUDDING UNINHIBITED BY BENZYMIDAZOL 3) protein.  Yeast and human BUB3s function in spindle assembly checkpoint control.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G49820.1	protein_coding	S-methyl-5-thioribose kinase	encodes 5-methylthioribose kinase, involved in methionine cycle The mRNA is cell-to-cell mobile.	S-methyl-5-thioribose kinase;(source:Araport11)
AT1G49870.1	protein_coding			myosin-2 heavy chain-like protein;(source:Araport11)
AT1G49830.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G49840.1	protein_coding	Protein of unknown function (DUF620)		glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620);(source:Araport11)
AT1G49850.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G49860.1	protein_coding	glutathione S-transferase (class phi) 14	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). The mRNA is cell-to-cell mobile.	glutathione S-transferase (class phi) 14;(source:Araport11)
AT1G49880.1	protein_coding	Erv1/Alr family protein	Encodes Erv1, a component of the mitochondrial intermembrane space assembly machinery involved in the import pathway of the small intermembrane space proteins.  It contains a Cys-X-Cys shuttle disulfide and oxidizes thioredoxin in vitro.	Erv1/Alr family protein;(source:Araport11)
AT1G49790.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G07160.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G07270.1	protein_coding	Cell division control, Cdc6		Cell division control, Cdc6;(source:Araport11)
AT1G07150.1	protein_coding	mitogen-activated protein kinase kinase kinase 13	member of MEKK subfamily	mitogen-activated protein kinase kinase kinase 13;(source:Araport11)
AT1G07240.1	protein_coding	UDP-glucosyl transferase 71C5	Encodes a UDP-glucosyltransferase that plays a role in abscisic acid (ABA) glucosylation from ABA to ABA-glucose ester and regulates ABA homeostasis, thereby influencing the ABA signal network.	UDP-glucosyl transferase 71C5;(source:Araport11)
AT1G07000.1	protein_coding	exocyst subunit exo70 family protein B2	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein B2;(source:Araport11)
AT1G07130.1	protein_coding	Nucleic acid-binding, OB-fold-like protein	Encodes a protein with similarity to yeast STN1, an OB fold protein involved in protecting yeast telomeres. In Arabidopsis, loss of STN1 function mutations exhibit gross morphological abnormalities and defects in telomere architecture and maintenance. STN1 likely plays a role in telomere end capping.	Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G07230.1	protein_coding	non-specific phospholipase C1		non-specific phospholipase C1;(source:Araport11)
AT1G07220.1	protein_coding	Arabidopsis thaliana protein of unknown function (DUF821)		O-glucosyltransferase rumi-like protein (DUF821);(source:Araport11)
AT1G07110.1	protein_coding	fructose-2,6-bisphosphatase	Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase.	fructose-2,6-bisphosphatase;(source:Araport11)
AT1G07040.1	protein_coding			plant/protein;(source:Araport11)
AT1G06980.1	protein_coding			6,7-dimethyl-8-ribityllumazine synthase;(source:Araport11)
AT1G07090.1	protein_coding	Protein of unknown function (DUF640)		LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
AT1G07030.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G06970.1	protein_coding	cation/hydrogen exchanger 14	member of Putative Na+/H+ antiporter family	cation/hydrogen exchanger 14;(source:Araport11)
AT1G07210.1	protein_coding	Ribosomal protein S18		Ribosomal protein S18;(source:Araport11)
AT1G06990.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G07080.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT1G07200.1	protein_coding	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein	Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance.	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G06960.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Similar to U2B'. Functions in  cold stress induced alternative splicing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G07070.1	protein_coding	Ribosomal protein L35Ae family protein		Ribosomal protein L35Ae family protein;(source:Araport11)
AT1G07180.1	protein_coding	alternative  NAD(P)H dehydrogenase 1	Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.	alternative NAD(P)H dehydrogenase 1;(source:Araport11)
AT1G07170.1	protein_coding	PHF5-like protein	Similar to human splicing factor 3b, 14 kda subunit, SF3b14b.	PHF5-like protein;(source:Araport11)
AT1G07060.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G07190.1	protein_coding			Lon protease;(source:Araport11)
AT1G07260.1	protein_coding	UDP-glucosyl transferase 71C3	Encodes a uridine diphosphate-glycosyltransferase that acts on methyl salicylate (MeSA) to form MeSA glucosides in vitro and in vivo and facilitates negative regulation of the SAR response by modulating homeostasis of MeSA and SA.	UDP-glucosyl transferase 71C3;(source:Araport11)
AT1G07020.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G07250.1	protein_coding	UDP-glucosyl transferase 71C4		UDP-glucosyl transferase 71C4;(source:Araport11)
AT1G07140.1	protein_coding	Pleckstrin homology (PH) domain superfamily protein	Encodes a putative Ran-binding protein (siRanBP).	Pleckstrin homology (PH) domain superfamily protein;(source:Araport11)
AT1G07010.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT1G07120.1	protein_coding			CHUP1-like protein;(source:Araport11)
AT1G07050.1	protein_coding	CCT motif family protein	FITNESS encodes a protein with a single CCT domain and belongs to the CCT motif family genes (CMF). FITNESS acts upstream JUB1 thereby controlling H2O2 levels. FITNESS has a role in cellular redox homeostasis controlling H2O2 levels, due to changes in enzymes, metabolites and transcripts related to ROS detoxification.	CCT motif family protein;(source:Araport11)
AT1G03070.1	protein_coding	Bax inhibitor-1 family protein		Bax inhibitor-1 family protein;(source:Araport11)
AT1G03060.1	protein_coding	Beige/BEACH domain ;WD domain, G-beta repeat protein	Encodes a WD/BEACH domain protein involved in cell morphogenesis and ribonucleoprotein particle formation.  It interacts with the P-body core component DCP2, associates to mRNA processing bodies (P-bodies), and regulates their assembly upon salt stress.	BEACH-DOMAIN HOMOLOG A1;(source:Araport11)
AT1G03130.1	protein_coding	photosystem I subunit D-2	Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD2)	photosystem I subunit D-2;(source:Araport11)
AT1G03050.1	protein_coding	ENTH/ANTH/VHS superfamily protein	Phosphatidylinositol binding clathrin assembly protein 5A/B are recent paralogs with overlapping functions in  recycling ANXUR proteins to the pollen tube membrane.	ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT1G03120.1	protein_coding			responsive to abscisic acid 28;(source:Araport11)
AT1G03040.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G03110.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a gene involved in the modification of nucleosides in tRNA.  Mutants have no 7-methylguanosine.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G03030.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G03100.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G03020.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2.	Thioredoxin superfamily protein;(source:Araport11)
AT1G03090.1	protein_coding	methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)	MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.	methylcrotonyl-CoA carboxylase alpha chain;(source:Araport11)
AT1G03010.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G03080.1	protein_coding	kinase interacting (KIP1-like) family protein		kinase interacting (KIP1-like) family protein;(source:Araport11)
AT1G03160.1	protein_coding	FZO-like	A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.	FZO-like protein;(source:Araport11)
AT1G03150.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G03140.1	protein_coding	splicing factor Prp18 family protein	PRP18a is one of two paralogs (the other being PRP18b) which are highly similar to the step II splicing factors in yeast. Loss of function mutations show defects in alternative splicing, mostly intron retention events.	splicing factor Prp18 family protein;(source:Araport11)
AT1G35930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14455.1);(source:TAIR10)
AT1G35860.1	protein_coding	translocon outer membrane complex 75-I	TOC75 pseudogene due to a 5.4-kb gypsy/Ty3-related retrotransposon inserted at the 5' end of the gene	translocon outer membrane complex 75-I;(source:Araport11)
AT1G35940.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1);(source:TAIR10)
AT1G35880.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G35820.1	protein_coding			heat shock protein;(source:Araport11)
AT1G35890.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein		NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G35790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-42 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G35830.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT1G35910.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G35920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14450.1);(source:TAIR10)
AT1G35850.1	protein_coding	pumilio 17	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 17;(source:Araport11)
AT1G48430.1	protein_coding	Dihydroxyacetone kinase		Dihydroxyacetone kinase;(source:Araport11)
AT1G48350.1	protein_coding	Ribosomal L18p/L5e family protein		Ribosomal L18p/L5e family protein;(source:Araport11)
AT1G48390.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT1G48330.1	protein_coding			SsrA-binding protein;(source:Araport11)
AT1G48270.1	protein_coding	G-protein-coupled receptor 1	encodes a protein similar to G-coupled receptor with 7 transmembrane regions. Overexpression studies suggest this gene is involved in dormancy and flowering. Reduction of expression results in decreased sensitivity to cytokinin.	G-protein-coupled receptor 1;(source:Araport11)
AT1G48370.1	protein_coding	YELLOW STRIPE like 8	Arabidopsis thaliana metal-nicotianamine transporter YSL4	YELLOW STRIPE like 8;(source:Araport11)
AT1G48380.1	protein_coding	root hair initiation protein root hairless 1 (RHL1)	Encodes a novel nuclear protein required for root hair initiation and ploidy-dependent cell growth.  Its sequence has similarity to the C-terminal domain of mammalian DNA topo IIalpha.  Shows in vitro DNA binding activity and is likely to be part of the topo VI complex by binding to subunit A.	root hair initiation protein root hairless 1 (RHL1);(source:Araport11)
AT1G48320.1	protein_coding	Thioesterase superfamily protein	Encodes one of the two functional DHNA-CoA (1,4-dihydroxy-2-naphthoyl-CoA) thioesterases found in Arabidopsis.	Thioesterase superfamily protein;(source:Araport11)
AT1G48360.1	protein_coding	zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides	Encodes a FAN1 homolog that is involved in interstrand crosslink repair. FAN1 appears to act in in a different pathway from MUS81 but in similar pathway with RECQ4A, RAD5A and MFH1.	zinc ion binding/nucleic acid binding/hydrolase;(source:Araport11)
AT1G48300.1	protein_coding		Cytosolic iron-sulfur protein with a [2Fe-2S] cluster which synthesizes triacylglycerol (DGAT activity).	diacylglycerol acyltransferase;(source:Araport11)
AT1G48280.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G48290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43660.1);(source:TAIR10)
AT1G48400.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G48310.1	protein_coding	chromatin remodeling factor18		chromatin remodeling factor18;(source:Araport11)
AT1G17500.1	protein_coding	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein		ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT1G17730.1	protein_coding	vacuolar protein sorting 46.1	Encodes an ESCRT-related protein: CHMP1A/AT1G73030; CHMP1B/AT1G17730.  CHMP1A and B mediate multivesicular body sorting of auxin carriers and are required for plant development.  ESCRT: Endosomal Sorting Complexes Required For Transport machinery; CHMP: Charged Multivesicular Body Protein/Chromatin Modifying Protein.	vacuolar protein sorting 46.1;(source:Araport11)
AT1G17750.1	protein_coding	PEP1 receptor 2	Encodes PEPR2, a plasma membrane leucine-rich repeat receptor kinase functioning as a receptor for the Pep1 and Pep2 peptides.  Pep1 and Pep2 are amino acids that induce the transcription of defense-related genes.	PEP1 receptor 2;(source:Araport11)
AT1G17680.1	protein_coding	tetratricopeptide repeat (TPR)-containing protein		tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT1G17690.1	protein_coding			U3 small nucleolar RNA-associated protein;(source:Araport11)
AT1G17700.1	protein_coding	prenylated RAB acceptor 1.F1		prenylated RAB acceptor 1.F1;(source:Araport11)
AT1G17710.1	protein_coding	Pyridoxal phosphate phosphatase-related protein	Encodes a phosphoethanolamine/phosphocholine phosphatase. It is likely to be involved in the liberation of inorganic phosphate from intracellular sources. Expression is upregulated in the shoot of cax1/cax3 mutant.	Pyridoxal phosphate phosphatase-related protein;(source:Araport11)
AT1G17720.1	protein_coding	Protein phosphatase 2A, regulatory subunit PR55	type 2A protein serine/threonine phosphatase 55 kDa B	Protein phosphatase 2A, regulatory subunit PR55;(source:Araport11)
AT1G17760.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a homolog of the mammalian protein CstF77, a polyadenylation factor subunit. RNA 3&#8242;-end?processing factor of antisense FLC transcript. Mediates silencing of the floral repressor gene FLC. Member of CstF complex.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G50460.1	protein_coding	hexokinase-like 1	Involved in glucose-ethylene crosstalk.	hexokinase-like 1;(source:Araport11)
AT1G50450.1	protein_coding	Saccharopine dehydrogenase 		Saccharopine dehydrogenase;(source:Araport11)
AT1G50440.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G50430.1	protein_coding	Ergosterol biosynthesis ERG4/ERG24 family	Mutants are defective in Brassinosteroid biosynthesis (delta7-sterol-C7 reduction step) and have a dwarf phenotype.	Ergosterol biosynthesis ERG4/ERG24 family;(source:Araport11)
AT1G50420.1	protein_coding	scarecrow-like 3	Encodes a scarecrow-like protein (SCL3) Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).	scarecrow-like 3;(source:Araport11)
AT1G50410.1	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related	Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG1.	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT1G48710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-252 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G48690.1	protein_coding	Auxin-responsive GH3 family protein		Auxin-responsive GH3 family protein;(source:Araport11)
AT1G48770.1	protein_coding	Protein of unknown function (DUF1639)		hypothetical protein (DUF1639);(source:Araport11)
AT1G48670.1	protein_coding	auxin-responsive GH3 family protein		auxin-responsive GH3 family protein;(source:Araport11)
AT1G48760.1	protein_coding	delta-adaptin	Encodes the putative delta subunit of the AP(adaptor protein)-3  complex and plays a role in vacuolar function.	delta-adaptin;(source:Araport11)
AT1G48660.1	protein_coding	Auxin-responsive GH3 family protein		Auxin-responsive GH3 family protein;(source:Araport11)
AT1G48750.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G48650.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT1G48740.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G48640.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G48730.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G48820.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT1G48720.1	protein_coding			Copia-like polyprotein/retrotransposon;(source:Araport11)
AT1G48800.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT1G48790.1	protein_coding	associated molecule with the SH3 domain of STAM 1		associated molecule with the SH3 domain of STAM 1;(source:Araport11)
AT1G48700.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G48780.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G51190.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity.  It is a key effector for establishment of the stem cell niche during embryonic pattern formation.  It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G51250.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G51260.1	protein_coding	lysophosphatidyl acyltransferase 3	ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, PUTATIVE SIMILAR TO ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GI:4583544 FROM [BRASSICA NAPUS]	lysophosphatidyl acyltransferase 3;(source:Araport11)
AT1G51270.1	protein_coding	structural molecules;transmembrane receptors;structural molecules		vesicle-associated protein 1-4;(source:Araport11)
AT1G51340.1	protein_coding	MATE efflux family protein	Encodes a root citrate transporter which together with the root malate transporter ALMT1 are the primary mechanism of aluminum tolerance.	MATE efflux family protein;(source:Araport11)
AT1G51350.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G51200.1	protein_coding	A20/AN1-like zinc finger family protein		A20/AN1-like zinc finger family protein;(source:Araport11)
AT1G51290.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G51360.1	protein_coding	dimeric A/B barrel domainS-protein 1	Involved in defense against fungal pathogens and located in cytosol.	dimeric A/B barrel domainS-protein 1;(source:Araport11)
AT1G51210.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G51300.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G51370.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G51220.1	protein_coding	WIP domain protein 5	Encodes a WIP domain containing protein. Putative target of WRKY53.WIP5 is a paralog of NTT and along with WIP4,acts redundantly in cell fate determination during primary root development. MP binds to AuxRE motifs within the WIP5 gene and likely regulates its expression.	WIP domain protein 5;(source:Araport11)
AT1G51310.1	protein_coding	transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases		tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase;(source:Araport11)
AT1G51230.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G51320.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G51240.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G51330.1	protein_coding	Serine protease inhibitor (SERPIN) family protein		Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT1G34790.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Encodes a zinc finger protein; involved in photomorphogenesis, flavonoid biosynthesis, flower and seed development.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G61240.1	protein_coding	Protein of unknown function (DUF707)		lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT1G61160.1	protein_coding			retrotransposon gag;(source:Araport11)
AT1G61180.1	protein_coding	LRR and NB-ARC domains-containing disease resistance protein		LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT1G61260.1	protein_coding	Protein of unknown function (DUF761)		cotton fiber (DUF761);(source:Araport11)
AT1G61170.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G61150.1	protein_coding	LisH and RanBPM domains containing protein		LisH and RanBPM domains containing protein;(source:Araport11)
AT1G61250.1	protein_coding	secretory carrier 3	Encodes a putative secretory carrier membrane protein (SC3). The mRNA is cell-to-cell mobile.	secretory carrier 3;(source:Araport11)
AT1G61140.1	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related		SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT1G61230.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G61130.1	protein_coding	serine carboxypeptidase-like 32		serine carboxypeptidase-like 32;(source:Araport11)
AT1G61120.1	protein_coding	terpene synthase 04	Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum. The mRNA is cell-to-cell mobile.	terpene synthase 04;(source:Araport11)
AT1G61110.1	protein_coding	NAC domain containing protein 25	NAC transcription regulator.  Regulates endosperm cell expansion during germination.	NAC domain containing protein 25;(source:Araport11)
AT1G61210.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	DWA3 encodes a DWD(DDB1 binding WD40) protein. Invitro analyses suggest its involvement in the negative regulation  of ABA responses.One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G61100.1	protein_coding	disease resistance protein (TIR class), putative		disease resistance protein (TIR class);(source:Araport11)
AT1G61200.1	protein_coding	homeobox-leucine zipper protein-related		homeobox-leucine zipper protein-like protein;(source:Araport11)
AT1G61190.1	protein_coding	LRR and NB-ARC domains-containing disease resistance protein	Putative CC-NB-LRR resistance gene. It's ortholog in ecotype Wei-0 RPP39 (R_190-Wei-0, accession number JQ045573, PMID:22359513) has been shown experimentally to recognize the effector ATR39-1 produced by Hyaloperonospora arabidopsidis (Hpa). The mRNA is cell-to-cell mobile.	LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT1G67780.1	protein_coding	Zinc-finger domain of monoamine-oxidase A repressor R1 protein		Zinc-finger domain of monoamine-oxidase A repressor R1 protein;(source:Araport11)
AT1G67840.1	protein_coding	chloroplast sensor kinase	Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases.  CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.	chloroplast sensor kinase;(source:Araport11)
AT1G67770.1	protein_coding	terminal EAR1-like 2	Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL2 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins. Expression patterns were similar to TEL1, with lower expression levels in most tissues examined.	terminal EAR1-like 2;(source:Araport11)
AT1G67830.1	protein_coding	alpha-fucosidase 1	Encodes a protein with &#945;-fucosidase activity. The activity was assessed on 2'-fucosyl-lactitol. AtFXG1 was able to remove the t-fucosyl residues of XXFG xyloglucan oligosaccharides.	alpha-fucosidase 1;(source:Araport11)
AT1G67650.1	protein_coding	SRP72 RNA-binding domain		SRP72 RNA-binding domain-containing protein;(source:Araport11)
AT1G67820.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G67750.1	protein_coding	Pectate lyase family protein		Pectate lyase family protein;(source:Araport11)
AT1G67740.1	protein_coding	photosystem II BY	PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese. Important for the redox control of cytochrome b559.	photosystem II BY;(source:Araport11)
AT1G67720.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G67800.1	protein_coding	Copine (Calcium-dependent phospholipid-binding protein) family		Copine (Calcium-dependent phospholipid-binding protein) family;(source:Araport11)
AT1G67710.1	protein_coding	response regulator 11	Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Affects ABA-JA crosstalk.	response regulator 11;(source:Araport11)
AT1G67790.1	protein_coding			sieve element occlusion protein;(source:Araport11)
AT1G67580.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G67690.1	protein_coding	Zincin-like metalloproteases family protein		Zincin-like metalloproteases family protein;(source:Araport11)
AT1G67680.1	protein_coding	SRP72 RNA-binding domain		SRP72 RNA-binding domain-containing protein;(source:Araport11)
AT1G67700.1	protein_coding			multidrug resistance protein;(source:Araport11)
AT1G67670.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G67730.1	protein_coding	beta-ketoacyl reductase 1	Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene. The mRNA is cell-to-cell mobile.	beta-ketoacyl reductase 1;(source:Araport11)
AT1G67760.1	protein_coding	TCP-1/cpn60 chaperonin family protein		TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT1G67850.1	protein_coding	Protein of unknown function (DUF707)		lysine ketoglutarate reductase trans-splicing protein (DUF707);(source:Araport11)
AT1G35480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 8.9e-45 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G35430.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G35420.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G35410.1	protein_coding	Protein of unknown function (DUF1184)		hypothetical protein (DUF1184);(source:Araport11)
AT1G35400.1	protein_coding	Protein of unknown function (DUF1184)		hypothetical protein (DUF1184);(source:Araport11)
AT1G35470.1	protein_coding	SPla/RYanodine receptor (SPRY) domain-containing protein	Encodes a homologue of human RanBPM that belongs to the uncharacterized family of plant SPRY, LisH, CTLH and CRA domain-containing proteins.	SPla/RYanodine receptor (SPRY) domain-containing protein;(source:Araport11)
AT1G35380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);retrotransposon family;(source:TAIR10)
AT1G35460.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a bHLH transcription factor involved in CFL1-mediated regulation of cuticle development. Overexpression leads to abnormal cuticle development.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G35440.1	protein_coding	cyclin T1;1		cyclin T1;(source:Araport11)
AT1G67550.1	protein_coding	urease	Encodes a nickel-containing urea hydrolase involved in nitrogen recycling.  It requires three urease accessory proteins for its activation. The mRNA is cell-to-cell mobile.	urease;(source:Araport11)
AT1G67560.1	protein_coding	PLAT/LH2 domain-containing lipoxygenase family protein		PLAT/LH2 domain-containing lipoxygenase family protein;(source:Araport11)
AT1G67530.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G67540.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G67570.1	protein_coding	Protein of unknown function (DUF3537)		zinc finger CONSTANS-like protein (DUF3537);(source:Araport11)
AT1G12060.1	protein_coding	BCL-2-associated athanogene 5	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	BCL-2-associated athanogene 5;(source:Araport11)
AT1G12050.1	protein_coding	fumarylacetoacetase, putative	Encodes a fumarylacetoacetase that converts  fumarylacetoacetate to acetoacetate and fumarate and is likely to be involved in tyrosine catabolism.	fumarylacetoacetase;(source:Araport11)
AT1G11970.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT1G11960.1	protein_coding	ERD (early-responsive to dehydration stress) family protein		ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT1G11870.1	protein_coding	Seryl-tRNA synthetase	Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	Seryl-tRNA synthetase;(source:Araport11)
AT1G12030.1	protein_coding	Protein of unknown function (DUF506) 		phosphoenolpyruvate carboxylase, putative (DUF506);(source:Araport11)
AT1G11950.1	protein_coding	Transcription factor jumonji (jmjC) domain-containing protein		Transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT1G12020.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G11940.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G12040.1	protein_coding	leucine-rich repeat/extensin 1	encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper. The mRNA is cell-to-cell mobile.	leucine-rich repeat/extensin 1;(source:Araport11)
AT1G11860.1	protein_coding	Glycine cleavage T-protein family		Glycine cleavage T-protein family;(source:Araport11)
AT1G12010.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Encodes a protein that appears to have 1-amino-cyclopropane-1-carboxylic acid oxidase activity based on mutant analyses. The mRNA is cell-to-cell mobile.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G11930.1	protein_coding	Predicted pyridoxal phosphate-dependent enzyme, YBL036C type		Putative pyridoxal phosphate-dependent enzyme, YBL036C type;(source:Araport11)
AT1G11850.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G12000.1	protein_coding	Phosphofructokinase family protein		Phosphofructokinase family protein;(source:Araport11)
AT1G11920.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G11840.1	protein_coding	glyoxalase I homolog	Encodes Ni+ dependent glyoxalase I homolog ATGLX1.	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein;(source:Araport11)
AT1G11990.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G11910.1	protein_coding	aspartic proteinase A1	Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).	aspartic proteinase A1;(source:Araport11)
AT1G11980.1	protein_coding	ubiquitin-related protein 3		ubiquitin-related protein 3;(source:Araport11)
AT1G11900.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G11890.1	protein_coding	Synaptobrevin family protein	member of SEC22 Gene Family	Synaptobrevin family protein;(source:Araport11)
AT1G12070.1	protein_coding	Immunoglobulin E-set superfamily protein		Immunoglobulin E-set superfamily protein;(source:Araport11)
AT1G11880.1	protein_coding	transferases, transferring hexosyl groups		transferases, transferring hexosyl groups;(source:Araport11)
AT1G34090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.8e-131 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT1G34170.1	protein_coding	AUXIN RESPONSE FACTOR 13		AUXIN RESPONSE FACTOR 13;(source:Araport11)
AT1G34000.1	protein_coding	one-helix protein 2	Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner.  Ohp2 is associated with PSI under low- or high-light conditions. Together with OHP1, OHP2 is essential for the formation of photosystem II reaction center, even though neither is a part of the final PSII RC. It forms a complex with OHP1 and HCF244, D1, D2, PsbI, and cytochrome b559 at an early stage of PSII de novo assembly and of PSII repair under high-light conditions.	one-helix protein 2;(source:Araport11)
AT1G34080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.0e-88 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G34160.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G33990.1	protein_coding	methyl esterase 14	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	methyl esterase 14;(source:Araport11)
AT1G34070.1	protein_coding			Copia-like polyprotein/retrotransposon;(source:Araport11)
AT1G34150.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT1G33980.1	protein_coding	Smg-4/UPF3 family protein	Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD)	Smg-4/UPF3 family protein;(source:Araport11)
AT1G34060.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT1G34140.1	protein_coding	poly(A) binding protein 1	polyadenylate-binding protein, putative / PABP, putative, non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from (Triticum aestivum) GI:1737492, (Nicotiana tabacum) GI:7673355, {Arabidopsis thaliana} SP:P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Only member of the class IV PABP family.	poly(A) binding protein 1;(source:Araport11)
AT1G33970.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	IAN9 is a member of a small family of proteins. It's expression is repressed upon pathogen infection and loss of function mutants show increased resistance to bacterial pathogens.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G34050.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT1G34130.1	protein_coding	staurosporin and temperature sensitive 3-like b	Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase.	staurosporin and temperature sensitive 3-like b;(source:Araport11)
AT1G34040.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT1G34120.1	protein_coding	inositol polyphosphate 5-phosphatase I	Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.	inositol polyphosphate 5-phosphatase I;(source:Araport11)
AT1G34030.1	protein_coding	Ribosomal protein S13/S18 family		Ribosomal protein S13/S18 family;(source:Araport11)
AT1G34110.1	protein_coding	Leucine-rich receptor-like protein kinase family protein		Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT1G34020.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT1G34010.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G34100.1	pseudogene			pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT1G06700.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G06630.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G06620.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase The mRNA is cell-to-cell mobile.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G06510.1	protein_coding			forkhead-associated domain protein;(source:Araport11)
AT1G06500.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06590.1	protein_coding			anaphase-promoting complex subunit;(source:Araport11)
AT1G06580.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G06570.1	protein_coding	phytoene desaturation 1	Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.	4-hydroxyphenylpyruvate dioxygenase;(source:Araport11)
AT1G06660.1	protein_coding		Encodes JASON.  jason mutant produces diploid male gametes leading to triploid progeny. Diploid gametes in the jason mutant are generated by a defect in male meiosis II.	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit;(source:Araport11)
AT1G06560.1	protein_coding	NOL1/NOP2/sun family protein		NOL1/NOP2/sun family protein;(source:Araport11)
AT1G06650.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase The mRNA is cell-to-cell mobile.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G06550.1	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT1G06490.1	protein_coding	glucan synthase-like 7	Encodes Callose Synthase 7 (CalS7), a phloem-specific callose synthase responsible for callose deposition in developing sieve elements during phloem formation and in mature phloem induced by wounding.	glucan synthase-like 7;(source:Araport11)
AT1G06470.1	protein_coding	Nucleotide/sugar transporter family protein		Nucleotide/sugar transporter family protein;(source:Araport11)
AT1G06540.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06670.1	protein_coding	nuclear DEIH-boxhelicase	nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins The mRNA is cell-to-cell mobile.	nuclear DEIH-boxhelicase;(source:Araport11)
AT1G06460.1	protein_coding	alpha-crystallin domain 32.1	ACD32.1 encodes an alpha-crystallin domain  containing protein with homology to small heat shock proteins.	alpha-crystallin domain 32.1;(source:Araport11)
AT1G06640.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase The mRNA is cell-to-cell mobile.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G06530.1	protein_coding	Tropomyosin-related	Encodes PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR2. Involved in mitochondrial morphogenesis.	Tropomyosin-like protein;(source:Araport11)
AT1G06450.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Deadenylase.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G06520.1	protein_coding	glycerol-3-phosphate acyltransferase 1	sn-glycerol-3-phosphate 2-O-acyltransferase. Expressed in flower buds and siliques. Homozygous mutant plants are male sterile.	glycerol-3-phosphate acyltransferase 1;(source:Araport11)
AT1G06440.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT1G34560.1	protein_coding	Protein of unknown function (DUF1184)		hypothetical protein (DUF1184);(source:Araport11)
AT1G34550.1	protein_coding	Protein of unknown function (DUF616)		transmembrane protein (DUF616);(source:Araport11)
AT1G34620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.5e-75 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G34540.1	protein_coding	cytochrome P450, family 94, subfamily D, polypeptide 1	member of CYP94D	cytochrome P450, family 94, subfamily D, polypeptide 1;(source:Araport11)
AT1G34530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 7.8e-116 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G34520.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein		MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT1G34590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1);(source:TAIR10)
AT1G34510.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT1G34580.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G34500.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein		MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT1G34570.1	protein_coding	Essential protein Yae1, N-terminal		Essential protein Yae1, N-terminal;(source:Araport11)
AT1G34490.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein		MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT1G57780.1	protein_coding	heavy-metal-associated domain-containing protein		heavy-metal-associated domain-containing protein;(source:Araport11)
AT1G57850.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT1G57860.1	protein_coding	Translation protein SH3-like family protein		Translation protein SH3-like family protein;(source:Araport11)
AT1G57830.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT1G57820.1	protein_coding	Zinc finger (C3HC4-type RING finger) family protein	Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro.  The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.	Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G57800.1	protein_coding	zinc finger (C3HC4-type RING finger) family protein	predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH3/VIM5 cDNA through RT-PCR were unsuccessful and only one Arabidopsis EST is associated with this locus. A paternally expressed imprinted gene.	zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G57790.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G22520.1	protein_coding	Domain of unknown function (DUF543)		MICOS complex subunit Mic10-like protein (DUF543);(source:Araport11)
AT1G22640.1	protein_coding	myb domain protein 3	MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expression	myb domain protein 3;(source:Araport11)
AT1G22590.1	protein_coding	AGAMOUS-like 87		AGAMOUS-like 87;(source:Araport11)
AT1G22470.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G22460.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G22550.1	protein_coding	Major facilitator superfamily protein	Tonoplast localized pH dependent, low affinity nitrogen transporter.In shoots,  expressed in leaf veins and mesophyll. In roots, GUS activity was detected in root vascular stele. More highly expressed in roots.	Major facilitator superfamily protein;(source:Araport11)
AT1G22540.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G22610.1	protein_coding	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein		C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT1G22450.1	protein_coding	cytochrome C oxidase 6B	subunit 6b of cytochrome c oxidase	cytochrome C oxidase 6B;(source:Araport11)
AT1G22530.1	protein_coding	PATELLIN 2	PATLs belong to a family of proteins having a Golgi dynamics (GOLD) domain in tandem with the Sec14p-like domain. PATLs are auxin regulated. Quadruple mutants (patl2456)  show altered PIN1 lateralization in root endodermis cells.	PATELLIN 2;(source:Araport11)
AT1G22600.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT1G22440.1	protein_coding	Zinc-binding alcohol dehydrogenase family protein		Zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT1G22510.1	protein_coding	RING/U-box protein with domain of unknown function (DUF 1232)		E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232);(source:Araport11)
AT1G22430.1	protein_coding	GroES-like zinc-binding dehydrogenase family protein		GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT1G22500.1	protein_coding	RING/U-box superfamily protein	Gene encodes a putative C3HC4-type RING zinc finger factor. it is induced in response to light and ascorbate stimulus.	RING/U-box superfamily protein;(source:Araport11)
AT1G22420.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G22490.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G22570.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G22410.1	protein_coding	Class-II DAHP synthetase family protein		Class-II DAHP synthetase family protein;(source:Araport11)
AT1G22480.1	protein_coding	Cupredoxin superfamily protein		Cupredoxin superfamily protein;(source:Araport11)
AT1G22400.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G53180.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53200.1	protein_coding			TAF RNA polymerase I subunit A;(source:Araport11)
AT1G53350.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G53210.1	protein_coding	sodium/calcium exchanger family protein / calcium-binding EF hand family protein	Encodes a Na+/Ca 2+ exchanger-like protein that participates in the maintenance of Ca 2+ homeostasis. The mRNA is cell-to-cell mobile.	sodium/calcium exchanger family protein / calcium-binding EF hand family protein;(source:Araport11)
AT1G53370.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G53300.1	protein_coding	tetratricopetide-repeat thioredoxin-like 1	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones. The TTL family is required for osmotic stress tolerance and male sporogenesis. The mRNA is cell-to-cell mobile.	tetratricopetide-repeat thioredoxin-like 1;(source:Araport11)
AT1G53230.1	protein_coding	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterochronic regulation of leaf differentiation.	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3;(source:Araport11)
AT1G53310.1	protein_coding	phosphoenolpyruvate carboxylase 1	Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.Plays an important role in carbon and nitrogen metabolism.	phosphoenolpyruvate carboxylase 1;(source:Araport11)
AT1G53240.1	protein_coding	Lactate/malate dehydrogenase family protein	mMDH1 encodes a mitochrondrial malate dehydrogenase. It is expressed at higher levels than the other mitochrondrial isoform mMDH2 (At3G15020) according to transcript and proteomic analyses.	Lactate/malate dehydrogenase family protein;(source:Araport11)
AT1G53320.1	protein_coding	tubby like protein 7	Member of plant TLP family.  TLP7 is tethered to the PM but detaches upon stimulus and translocates to the nucleus. Has DNA binding activity but lacks conservation of the transcription activation domain.	tubby like protein 7;(source:Araport11)
AT1G53250.1	protein_coding			histone-lysine N-methyltransferase, H3 lysine-79 specific-like protein;(source:Araport11)
AT1G53330.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	encodes a member of the pentatricopeptide repeat (PPR) gene family. T-DNA insertion mutants had a complex phenotypic expression, ranging from embryo lethal to seedling lethal, to just subtle changes.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G53260.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53340.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G53270.1	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT1G53360.1	protein_coding	F-box associated ubiquitination effector family protein		F-box/associated interaction domain protein;(source:Araport11)
AT1G53280.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes a homolog of animal DJ-1 superfamily protein.  In the A. thaliana genome, three genes encoding close homologs of human DJ-1 were identified AT3G14990 (DJ1A), AT1G53280 (DJ1B) and AT4G34020 (DJ1C).  Among the three homologs, DJ1C is essential for chloroplast development and viability. It exhibits glyoxalase activity towards glyoxal and methylglyoxal.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT1G53190.1	protein_coding	RING/U-box superfamily protein	Encodes a RING-type E3 ligase that positively regulates CIN-like TCP activity to promote leaf development by mediating the degradation of the TCP repressor TIE1.	RING/U-box superfamily protein;(source:Araport11)
AT1G53290.1	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT1G53380.1	protein_coding	Plant protein of unknown function (DUF641)		hypothetical protein (DUF641);(source:Araport11)
AT1G53390.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G53400.1	protein_coding	Ubiquitin domain-containing protein		Ubiquitin domain-containing protein;(source:Araport11)
AT1G65960.1	protein_coding	glutamate decarboxylase 2	glutamate decarboxylase (GAD2) The mRNA is cell-to-cell mobile.	glutamate decarboxylase 2;(source:Araport11)
AT1G65970.1	protein_coding	thioredoxin-dependent peroxidase 2	thioredoxin-dependent peroxidase 2	thioredoxin-dependent peroxidase 2;(source:Araport11)
AT1G65890.1	protein_coding	acyl activating enzyme 12		acyl activating enzyme 12;(source:Araport11)
AT1G65980.1	protein_coding	thioredoxin-dependent peroxidase 1	thioredoxin-dependent peroxidase	thioredoxin-dependent peroxidase 1;(source:Araport11)
AT1G65900.1	protein_coding			plant/protein;(source:Araport11)
AT1G65910.1	protein_coding	NAC domain containing protein 28		NAC domain containing protein 28;(source:Araport11)
AT1G65990.1	protein_coding	type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein		type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein;(source:Araport11)
AT1G65920.1	protein_coding	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain		Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT1G65850.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G65940.1	pseudogene			pseudogene of Dof-type zinc finger domain-containing protein;(source:Araport11)
AT1G65860.1	protein_coding	flavin-monooxygenase glucosinolate S-oxygenase 1	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	flavin-monooxygenase glucosinolate S-oxygenase 1;(source:Araport11)
AT1G65930.1	protein_coding	cytosolic NADP+-dependent isocitrate dehydrogenase	Encodes a NADP+-isocitrate dehydrogenase that is believed to function in the cytosol. It appears to contribute to NADPH production under oxidative stress, and thereby to participate in redox signalling linked to defense responses. The mRNA is cell-to-cell mobile.	cytosolic NADP+-dependent isocitrate dehydrogenase;(source:Araport11)
AT1G65950.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G65870.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT1G65880.1	protein_coding	benzoyloxyglucosinolate 1	Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds.	benzoyloxyglucosinolate 1;(source:Araport11)
AT1G30260.1	protein_coding			galactosyltransferase family protein;(source:Araport11)
AT1G30290.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	unknown protein	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G30240.1	protein_coding			proline-, glutamic acid/leucine-rich protein;(source:Araport11)
AT1G30210.1	protein_coding	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24	TCP family protein involved in heterochronic regulation of leaf differentiation.	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24;(source:Araport11)
AT1G30250.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G30230.1	protein_coding	Glutathione S-transferase, C-terminal-like;Translation elongation  factor EF1B/ribosomal protein S6	Encodes a guanine nucleotide exchange factor that plays an important role in translation elongation. It is localized in the plasma membrane and cytosol.  Mutants display ectopic lignin deposition as well as cell expansion defects	translation elongation factor EF1B/ribosomal protein S6 family protein;(source:Araport11)
AT1G30270.1	protein_coding	CBL-interacting protein kinase 23	Arabidopsis thaliana CBL-interacting protein kinase 23.  CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylating AKT1.  CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9. The mRNA is cell-to-cell mobile.	CBL-interacting protein kinase 23;(source:Araport11)
AT1G30280.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G30300.1	protein_coding	Metallo-hydrolase/oxidoreductase superfamily protein		Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT1G30220.1	protein_coding	inositol transporter 2	Inositol transporter presenting conserved extracellular loop domains homologs of plexins/semaphorin/integrin  (PSI) domains from animal type I receptors.	inositol transporter 2;(source:Araport11)
AT1G42960.1	protein_coding		expressed protein localized to the inner membrane of the chloroplast.	inner membrane localized protein;(source:Araport11)
AT1G42970.1	protein_coding	glyceraldehyde-3-phosphate dehydrogenase B subunit	Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase that can use both NADH and NADPH to reduce 1,3-diphosphate glycerate. It forms A2B2 heterotetramers with GapA forms of the GADPH enzyme. These complexes are active in the light under reducing conditions, but show reduced NADPH-dependent activity in response to oxidized thioredoxins and increased NAD(H)/NADP(H) ratios due to the formation of inactive A8B8 hexadecamers. The mRNA is cell-to-cell mobile.	glyceraldehyde-3-phosphate dehydrogenase B subunit;(source:Araport11)
AT1G42980.1	protein_coding	Actin-binding FH2 (formin homology 2) family protein		Actin-binding FH2 (formin homology 2) family protein;(source:Araport11)
AT1G42990.1	protein_coding	basic region/leucine zipper motif 60	bZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. bZIP60 mRNA is upregulated by the addition of ER stress inducers, tunicamycin (inhibitor of N-linked glycosylation), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress, bZIP60 mRNA is spliced by IRE1A and IRE1B to produce bZIP60-S, an active transcription factor without the transmembrane domain. bZIP60-U, a product of unspliced form of bZIP60 mRNA, is localized at the ER membrane and bZIP60-S is localized in the nucleus.	basic region/leucine zipper motif 60;(source:Araport11)
AT1G13560.1	protein_coding	aminoalcoholphosphotransferase 1	Encodes aminoalcoholphosphotransferase AAPT1.	aminoalcoholphosphotransferase 1;(source:Araport11)
AT1G13490.1	protein_coding	Protein of unknown function (DUF1262)		hypothetical protein (DUF1262);(source:Araport11)
AT1G13550.1	protein_coding	Protein of unknown function (DUF1262)		hypothetical protein (DUF1262);(source:Araport11)
AT1G13500.1	protein_coding	Protein of unknown function (DUF1262)		hypothetical protein (DUF1262);(source:Araport11)
AT1G13540.1	protein_coding	Protein of unknown function (DUF1262)		hypothetical protein (DUF1262);(source:Araport11)
AT1G13510.1	protein_coding	Protein of unknown function (DUF1262)		hypothetical protein (DUF1262);(source:Araport11)
AT1G13630.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G13520.1	protein_coding	Protein of unknown function (DUF1262)		hypothetical protein (DUF1262);(source:Araport11)
AT1G13530.1	protein_coding	Protein of unknown function (DUF1262)	soluble N-ethylmaleimide-sensitive factor (NSF) adaptor protein	hypothetical protein (DUF1262);(source:Araport11)
AT1G13580.1	protein_coding	LAG1 longevity assurance homolog 3	Encodes a ceramide synthase that together with LOH1 is essential for production of ceramides containing Very Long Chain Fatty acid VLCFA-Ceramides(mainly C 22 to 26).	LAG1 longevity assurance-like protein;(source:Araport11)
AT1G13570.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G49450.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G49310.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G49370.1	pseudogene			pseudogene of Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G49360.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G49430.1	protein_coding	long-chain acyl-CoA synthetase 2	Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.	long-chain acyl-CoA synthetase 2;(source:Araport11)
AT1G49350.1	protein_coding	pfkB-like carbohydrate kinase family protein		pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT1G49420.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G49520.1	protein_coding	SWIB complex BAF60b domain-containing protein		SWIB complex BAF60b domain-containing protein;(source:Araport11)
AT1G49340.1	protein_coding	Phosphatidylinositol 3- and 4-kinase family protein	Encodes a phosphatidylinositol 4-kinase that is expressed in inflorescences and shoots.	Phosphatidylinositol 3- and 4-kinase family protein;(source:Araport11)
AT1G49250.1	protein_coding	ATP-dependent DNA ligase		ATP-dependent DNA ligase;(source:Araport11)
AT1G49410.1	protein_coding	translocase of the outer mitochondrial membrane 6		translocase of the outer mitochondrial membrane 6;(source:Araport11)
AT1G49330.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G49400.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G49500.1	protein_coding			transcription initiation factor TFIID subunit 1b-like protein;(source:Araport11)
AT1G49320.1	protein_coding	unknown seed protein like 1	Encodes USPL1, a BURP domain protein targeted to the protein storage vacuoles.  Overexpression of USPL1 affects seed development, protein storage vacuoles and lipid vesicles morphology and function.	unknown seed protein like 1;(source:Araport11)
AT1G49390.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G49490.1	protein_coding	Leucine-rich repeat (LRR) family protein	Pollen expressed protein required for pollen tube growth.Along with other members of the LRX family, itnteracts with RALF4 to control pollen tube growth and integrity. Loss of function results in premature pollen tube rupture and reduced fertility.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G49470.1	protein_coding	Family of unknown function (DUF716) 		transmembrane epididymal protein (DUF716);(source:Araport11)
AT1G49300.1	protein_coding	RAB GTPase homolog  G3E	encodes a small GTPase involved in membrane trafficking. Gene expression is induced by hydrogen peroxide and lines. Lines overexpressing the gene are more tolerant to high salt and hyperosmotic conditions.	RAB GTPase homolog G3E;(source:Araport11)
AT1G49480.1	protein_coding	related to vernalization1 1	Encodes a nuclear-localized DNA-binding protein that interacts with ITN1 at the PM and nuclei in vivo and may regulate ITN's subcellular localization.	related to vernalization1 1;(source:Araport11)
AT1G49380.1	protein_coding	cytochrome c biogenesis protein family		cytochrome c biogenesis protein family;(source:Araport11)
AT1G49290.1	protein_coding			Rho guanine nucleotide exchange factor;(source:Araport11)
AT1G49270.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT1G49260.1	protein_coding			mechanosensitive ion channel-like protein;(source:Araport11)
AT1G49510.1	protein_coding	embryo defective 1273	Salt stress inducible protein of unknown function.	embryo defective 1273;(source:Araport11)
AT1G49560.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT1G12860.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway.  Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G12870.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G12790.1	protein_coding			DNA ligase-like protein;(source:Araport11)
AT1G12970.1	protein_coding	plant intracellular ras group-related LRR 3	Encodes PIRL3, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.	plant intracellular ras group-related LRR 3;(source:Araport11)
AT1G12880.1	protein_coding	nudix hydrolase homolog 12		nudix hydrolase homolog 12;(source:Araport11)
AT1G12800.1	protein_coding	Nucleic acid-binding, OB-fold-like protein	SDP is a chloroplast localized RNA binding protein that is required for plastid rRNA processing. Plants harboring a mutation in SDP have numerous defects including reduced chlorophyll content, poor growth, yellow leaves and abnormal chloroplasts.	Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G12920.1	protein_coding	eukaryotic release factor 1-2	Encodes a eukaryotic release factor one homolog.	eukaryotic release factor 1-2;(source:Araport11)
AT1G12890.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G12810.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT1G12910.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes LIGHT-REGULATED WD1 (LWD1), a clock proteins regulating circadian period length and photoperiodic flowering.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G12900.1	protein_coding	glyceraldehyde 3-phosphate dehydrogenase A subunit 2		glyceraldehyde 3-phosphate dehydrogenase A subunit 2;(source:Araport11)
AT1G12820.1	protein_coding	auxin signaling F-box 3	Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots.	auxin signaling F-box 3;(source:Araport11)
AT1G12780.1	protein_coding	UDP-D-glucose/UDP-D-galactose 4-epimerase 1	Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.	UDP-D-glucose/UDP-D-galactose 4-epimerase 1;(source:Araport11)
AT1G12830.1	protein_coding			nucleolin;(source:Araport11)
AT1G12930.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G12840.1	protein_coding	vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3)	Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase).  Bound and phosphorylated by AtWNK8. The mRNA is cell-to-cell mobile.	vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3);(source:Araport11)
AT1G12940.1	protein_coding	nitrate transporter2.5	member of High affinity nitrate transporter family	nitrate transporter2.5;(source:Araport11)
AT1G12850.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT1G12950.1	protein_coding	root hair specific 2		root hair specific 2;(source:Araport11)
AT1G12960.1	protein_coding	Ribosomal protein L18e/L15 superfamily protein		Ribosomal protein L18e/L15 superfamily protein;(source:Araport11)
AT1G27990.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G27910.1	protein_coding	plant U-box 45	Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.	plant U-box 45;(source:Araport11)
AT1G28000.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G27920.1	protein_coding	microtubule-associated protein 65-8		microtubule-associated protein 65-8;(source:Araport11)
AT1G28090.1	protein_coding	Polynucleotide adenylyltransferase family protein		Polynucleotide adenylyltransferase family protein;(source:Araport11)
AT1G28010.1	protein_coding	P-glycoprotein 14	Encodes an ATP-binding cassette (ABC) transporter.  Expressed in the vascular tissue of primary stem.	P-glycoprotein 14;(source:Araport11)
AT1G27930.1	protein_coding	Protein of unknown function (DUF579)	Arabinogalactan methylesterase,involved in arabinogalactan glucuronic acid methylation.  Interacts with eIF3.	glucuronoxylan 4-O-methyltransferase-like protein (DUF579);(source:Araport11)
AT1G28110.1	protein_coding	serine carboxypeptidase-like 45		serine carboxypeptidase-like 45;(source:Araport11)
AT1G28020.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G27940.1	protein_coding	P-glycoprotein 13		P-glycoprotein 13;(source:Araport11)
AT1G28120.1	protein_coding			ubiquitin thioesterase otubain-like protein;(source:Araport11)
AT1G28030.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G27950.1	protein_coding	glycosylphosphatidylinositol-anchored lipid protein transfer 1	Encodes LTPG1, a lipid transfer protein with a predicted GPI (glycosylphosphatidylinositol)-anchor domain.  Localized in the plasma membrane. Disruption of the LTPG1 gene causes alterations of cuticular lipid composition, but no significant changes on total wax and cutin monomer loads are seen. The mRNA is cell-to-cell mobile.	glycosylphosphatidylinositol-anchored lipid protein transfer 1;(source:Araport11)
AT1G28040.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G27960.1	protein_coding	evolutionarily conserved C-terminal region 9	encodes a protein whose C-terminal region is similar to ECT1 and ECT2, which bind to CIPK1.	evolutionarily conserved C-terminal region 9;(source:Araport11)
AT1G28050.1	protein_coding	B-box type zinc finger protein with CCT domain		B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT1G27970.1	protein_coding	nuclear transport factor 2B	Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport. The mRNA is cell-to-cell mobile.	nuclear transport factor 2B;(source:Araport11)
AT1G28060.1	protein_coding	Pre-mRNA-splicing factor 3		Pre-mRNA-splicing factor 3;(source:Araport11)
AT1G27980.1	protein_coding	dihydrosphingosine phosphate lyase		dihydrosphingosine phosphate lyase;(source:Araport11)
AT1G28070.1	protein_coding			ATP-dependent RNA helicase;(source:Araport11)
AT1G28100.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G28080.1	protein_coding	RING finger protein		RING finger protein;(source:Araport11)
AT1G27900.1	protein_coding	RNA helicase family protein		RNA helicase family protein;(source:Araport11)
AT1G04990.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G04900.1	protein_coding	Protein of unknown function (DUF185)		NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185);(source:Araport11)
AT1G04890.1	protein_coding	Protein of unknown function, DUF593		zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT1G04980.1	protein_coding	PDI-like 2-2	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.	PDI-like 2-2;(source:Araport11)
AT1G04790.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G04880.1	protein_coding	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain	Encodes a ARID-HMG DNA-binding protein that functions in pollen tube growth through the regulation of gene expression by interacting with the transcription factors AGL66 and AGL104.	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT1G04970.1	protein_coding	lipid-binding serum glycoprotein family protein	Encodes one of the two LBP/BPI related proteins (AT1G04970/LBR-1, AT3G20270/LBR-2) that bind to LPS directly and regulate PR1 expression.	lipid-binding serum glycoprotein family protein;(source:Araport11)
AT1G04780.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT1G04960.1	protein_coding	Protein of unknown function (DUF1664)		golgin family A protein (DUF1664);(source:Araport11)
AT1G04870.1	protein_coding	protein arginine methyltransferase 10	Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro.  Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.	protein arginine methyltransferase 10;(source:Araport11)
AT1G04770.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	SDI2 is a member of a small family of TPR proteins in Arabidopsis. Like SDI1 it is induced by low sulfer and appears to play a role in negative regulation of glucosinolate biosynthesis.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G04940.1	protein_coding	translocon at the inner envelope membrane of chloroplasts 20	Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation. The Arabidopsis genome encodes four Tic20 homologous proteins, AT1G04940(Tic20-I), AT2G47840(Tic20-II), AT4G03320(Tic20-IV) and AT5G55710(Tic20-V).	translocon at the inner envelope membrane of chloroplasts 20;(source:Araport11)
AT1G04860.1	protein_coding	ubiquitin-specific protease 2	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 2;(source:Araport11)
AT1G04760.1	protein_coding	vesicle-associated membrane protein 726	member of Synaptobrevin -like protein family	vesicle-associated membrane protein 726;(source:Araport11)
AT1G04930.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G04850.1	protein_coding	ubiquitin-associated (UBA)/TS-N domain-containing protein		ubiquitin-associated (UBA)/TS-N domain-containing protein;(source:Araport11)
AT1G04920.1	protein_coding	sucrose phosphate synthase 3F	Encodes a protein with putative sucrose-phosphate synthase activity.	sucrose phosphate synthase 3F;(source:Araport11)
AT1G04840.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G04910.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G04830.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT1G04950.1	protein_coding	TATA BOX ASSOCIATED FACTOR II 59	Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.  Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced.  This is due to reduced pollen tube growth of the mutant.	TATA BOX ASSOCIATED FACTOR II 59;(source:Araport11)
AT1G04810.1	protein_coding	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit		26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit;(source:Araport11)
AT1G04820.1	protein_coding	tubulin alpha-4 chain	Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers.	tubulin alpha-4 chain;(source:Araport11)
AT1G04800.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT1G56440.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G56450.1	protein_coding	20S proteasome beta subunit G1	20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds	20S proteasome beta subunit G1;(source:Araport11)
AT1G56460.1	protein_coding	HIT zinc finger ;PAPA-1-like conserved region		HIT zinc finger and PAPA-1-like domain-containing protein;(source:Araport11)
AT1G56400.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G56410.1	protein_coding	heat shock protein 70 (Hsp 70) family protein	encodes a heat shock protein whose gene expression is induced by heat and dehydration.	heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT1G56430.1	protein_coding	nicotianamine synthase 4	Encodes a protein with nicotianamine synthase activity.	nicotianamine synthase 4;(source:Araport11)
AT1G56340.1	protein_coding	calreticulin 1a	Encodes one of three Arabidopsis calreticulins.   In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels. Post-transcriptionally regulates together with CRT2 VAMP721/722 levels under ER stress.	calreticulin 1a;(source:Araport11)
AT1G56500.1	protein_coding	haloacid dehalogenase-like hydrolase family protein	Encodes a thylakoid membrane protein with thioredoxin-like and beta-propeller domains located in the lumen and a haloacid-dehalogenase domain exposed to the chloroplast stroma. The protein's role may be to prevent formation of a slowly reversible form of antenna quenching, thereby maintaining the efficiency of light harvesting. The mRNA is cell-to-cell mobile.	haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT1G56510.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class)	TIR-NB-LRR protein that confers resistance to four races of Albugo candida. The mRNA is cell-to-cell mobile.	Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G56530.1	protein_coding	hydroxyproline-rich glycoprotein family protein	Predicted as a potential part of a trans-NAT (natural antisense transcript) pair (At4g19270::At1g56530).	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G56420.1	protein_coding			antigenic heat-stable protein;(source:Araport11)
AT1G64770.1	protein_coding	NDH-dependent cyclic electron flow 1	encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.	NDH-dependent cyclic electron flow 1;(source:Araport11)
AT1G64980.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Encodes a putative nucleotide-diphospho-sugar transferase required for pollen germination and tube growth.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT1G64900.1	protein_coding	cytochrome P450, family 89, subfamily A, polypeptide 2	Encodes cytochrome P450 (CYP89A2). The mRNA is cell-to-cell mobile.	cytochrome P450, family 89, subfamily A, polypeptide 2;(source:Araport11)
AT1G64830.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G64780.1	protein_coding	ammonium transporter 1;2	encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.	ammonium transporter 1;(source:Araport11)
AT1G64990.1	protein_coding	GPCR-type G protein 1	Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG1 binds to GPA1, the alpha subunit of the heterotrimeric G protein.  GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG1 and may act to down-regulate GTG1 binding to ABA. GTG1 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG1 transcript levels do not appear to change in response to ABA or abiotic stresses.	GPCR-type G protein 1;(source:Araport11)
AT1G64910.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G64840.1	protein_coding	Protein of unknown function (DUF295)		LOW protein: F-box/kelch-repeat protein (DUF295);(source:Araport11)
AT1G64710.1	protein_coding	GroES-like zinc-binding dehydrogenase family protein		GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT1G64920.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G64850.1	protein_coding	Calcium-binding EF hand family protein		Calcium-binding EF hand family protein;(source:Araport11)
AT1G65010.1	protein_coding	Plant protein of unknown function (DUF827)	Encodes a microtubule-associated protein. Putative role in flower development.  Comparison of SALK_061426C to Columbia wild type in normal lighting and under low light of 33 micromoles per meter-squared per second resulted in a trend toward earlier bolting in the mutant under low light (P=0.055) (Ann Stapleton and Patrick Pridgen, 2009, personal communication).	WEB family protein (DUF827);(source:Araport11)
AT1G64930.1	protein_coding	cytochrome P450, family 87, subfamily A, polypeptide 7	member of CYP89A	cytochrome P450, family 87, subfamily A, polypeptide 7;(source:Araport11)
AT1G64720.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein	membrane related protein CP5	Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G64940.1	protein_coding	cytochrome P450, family 87, subfamily A, polypeptide 6	member of CYP89A	cytochrome P450, family 87, subfamily A, polypeptide 6;(source:Araport11)
AT1G64740.1	protein_coding	alpha-1 tubulin	alpha-tubulin expressed primarily in stamens and mature pollen	alpha-1 tubulin;(source:Araport11)
AT1G64750.1	protein_coding	deletion of SUV3 suppressor 1(I)		deletion of SUV3 suppressor 1(I);(source:Araport11)
AT1G64680.1	protein_coding			beta-carotene isomerase D27;(source:Araport11)
AT1G64800.1	protein_coding	DNA binding;sequence-specific DNA binding transcription factors		DNA binding / transcription factor;(source:Araport11)
AT1G65000.1	protein_coding			F-box only protein;(source:Araport11)
AT1G64860.1	protein_coding	sigma factor A	Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme	sigma factor A;(source:Araport11)
AT1G64870.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G64950.1	protein_coding	cytochrome P450, family 89, subfamily A, polypeptide 5	member of CYP89A The mRNA is cell-to-cell mobile.	cytochrome P450, family 89, subfamily A, polypeptide 5;(source:Araport11)
AT1G64790.1	protein_coding	ILITYHIA	ILITHYIA (ILA) is a HEAT repeat protein involved in plant immunity. The gene is also involved in systemic acquired resistance induced by P. syringae expressing avrRps4. Loss-of-function mutants of ILA caused pleiotropic defects in the mutant plants. The mutant plants are smaller in size and the leaves are serrated and yellow to light green in color. Required for bacterium-triggered stomatal closure.	ILITYHIA;(source:Araport11)
AT1G64880.1	protein_coding	Ribosomal protein S5 family protein		Ribosomal protein S5 family protein;(source:Araport11)
AT1G64960.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G64810.1	protein_coding	Arabidopsis thaliana protein of unknown function (DUF794)	Encodes a chloroplast localized RNA binding protein that is involved in group II intron splicing.  Splicing defects can account for the loss of photosynthetic complexes in apo1 mutants.	APO RNA-binding protein (DUF794);(source:Araport11)
AT1G64890.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G64760.1	protein_coding	O-Glycosyl hydrolases family 17 protein	ZERZAUST is an atypical  &#946;-1,3 glucanase. The protein is localized to punctate regions of the apoplast, near cellular junctions. Mutants in Ler background display aberrant floral morphology and twisted  siliques and stems. Biochemcial analysis of mutant cell wall composition indicates cell wall defects. However, in Col background, there is no phenotype due to compensatory effect of ZETH gene expression.	O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT1G64970.1	protein_coding	gamma-tocopherol methyltransferase	gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves	gamma-tocopherol methyltransferase;(source:Araport11)
AT1G64820.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G55030.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT1G54980.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G54950.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G54960.1	protein_coding	NPK1-related protein kinase 2	member of MEKK subfamily	NPK1-related protein kinase 2;(source:Araport11)
AT1G54930.1	protein_coding	GRF zinc finger / Zinc knuckle protein		GRF zinc finger / Zinc knuckle protein;(source:Araport11)
AT1G54970.1	protein_coding	proline-rich protein 1	encodes a proline-rich protein that is specifically expressed in the root. The mRNA is cell-to-cell mobile.	proline-rich protein 1;(source:Araport11)
AT1G54990.1	protein_coding	alpha/beta-Hydrolases superfamily protein	auxin response mutant (AXR4) The mRNA is cell-to-cell mobile.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G54870.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	ChlADR is an aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons in vitro. The N-terminal region of this protein directs GFP to the chloroplast where where ChlADR likely helps to maintain the photosynthetic process by detoxifying reactive carbonyls formed during lipid peroxidation. In addition, this enzyme can also reduce cis-3-hexenal, a major plant volatile compound that contributes to green leaf odor, as well as methylglyoxal in vitro.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G54890.1	protein_coding	Late embryogenesis abundant (LEA) protein-related		Late embryogenesis abundant (LEA) protein-like protein;(source:Araport11)
AT1G55000.1	protein_coding	peptidoglycan-binding LysM domain-containing protein		peptidoglycan-binding LysM domain-containing protein;(source:Araport11)
AT1G55020.1	protein_coding	lipoxygenase 1	lipoxygenase, a defense gene conferring resistance Xanthomonas campestris The mRNA is cell-to-cell mobile.	lipoxygenase 1;(source:Araport11)
AT1G54920.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G55040.1	protein_coding	zinc finger (Ran-binding) family protein	SED1 is a protein of unknown function that is located in the mitochondrion. sed1 mutants are embryo lethal.	zinc finger (Ran-binding) family protein;(source:Araport11)
AT1G54940.1	protein_coding	plant glycogenin-like starch initiation protein 4	Encodes a xylan glucuronosyltransferase.	plant glycogenin-like starch initiation protein 4;(source:Araport11)
AT1G55050.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G55010.1	protein_coding	plant defensin 1.5	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	plant defensin 1.5;(source:Araport11)
AT1G18890.1	protein_coding	calcium-dependent protein kinase 1	encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro.	calcium-dependent protein kinase 1;(source:Araport11)
AT1G18990.1	protein_coding	Protein of unknown function, DUF593		myosin-binding protein, putative (Protein of unknown function, DUF593);(source:Araport11)
AT1G18900.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G19000.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT1G19100.1	protein_coding	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	Encodes a member of the conserved Microrchidia (MORC) adenosine triphosphatase (ATPase) family, predicted to catalyze alterations in chromosome superstructure. Required for heterochromatin condensation and gene silencing.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein;(source:Araport11)
AT1G19010.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G19110.1	protein_coding	inter-alpha-trypsin inhibitor heavy chain-related		inter-alpha-trypsin inhibitor heavy chain-like protein;(source:Araport11)
AT1G18940.1	protein_coding	Nodulin-like / Major Facilitator Superfamily protein		Nodulin-like / Major Facilitator Superfamily protein;(source:Araport11)
AT1G19120.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT1G19130.1	protein_coding			RmlC-like jelly roll fold protein;(source:Araport11)
AT1G19030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1);(source:TAIR10)
AT1G18950.1	protein_coding	DDT domain superfamily		DDT domain superfamily;(source:Araport11)
AT1G18910.1	protein_coding	zinc ion binding;zinc ion binding	E3 ubiquitin ligase that functions redundantly in the root with BTSL1 to negatively regulate iron uptake.	zinc ion binding protein;(source:Araport11)
AT1G18960.1	protein_coding	myb-like HTH transcriptional regulator family protein		myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT1G18930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G19050.1	protein_coding	response regulator 7	Encodes a member of the Arabidopsis response regulator (ARR) family, most closely related to ARR15. A two-component response regulator protein containing a phosphate accepting domain in the receiver domain but lacking a DNA binding domain in the output domain. Involved in response to cytokinin and meristem stem cell maintenance. Arr7 protein is stabilized by cytokinin.	response regulator 7;(source:Araport11)
AT1G18970.1	protein_coding	germin-like protein 4	Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).	germin-like protein 4;(source:Araport11)
AT1G19020.1	protein_coding			CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase;(source:Araport11)
AT1G19060.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT1G18980.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT1G19080.1	protein_coding	GINS complex protein	This gene is predicted to encode a PSF3 component of the GINS complex. This complex has been implicated in the initiation of DNA replication in Xenopus. Mutations in this gene cause defects in embryo development.	GINS complex protein;(source:Araport11)
AT1G19090.1	protein_coding	receptor-like serine/threonine kinase 2	receptor-like serine/threonine kinase (RKF2)	receptor-like serine/threonine kinase 2;(source:Araport11)
AT1G19040.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein		NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G19070.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G35710.1	protein_coding	Protein kinase family protein with leucine-rich repeat domain		kinase family with leucine-rich repeat domain-containing protein;(source:Araport11)
AT1G35720.1	protein_coding	annexin 1	Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have peroxidase activity. This activity is thought to be dependent on the presence of post-translational modifications (most likely phosphorylation). The protein was shown to be present as a mixture of monomer and homodimer. The homodimerization seems to be dependent on the presence of Ca2+ or H2O2. The dimerization was prevented by the addition of DTT, &#946;-mercaptoethanol and TCEP. Annat1 mRNA is expressed in flowers, roots,leaves and stems and is most abundant in stems. mRNA levels are increased in response to oxidative stress.  Developmental expression patterns suggest a role in Golgi-mediated polysaccharide secretion. It is a Ca  2+-permeable transporter providing a molecular link between reactive oxygen species and cytosolic Ca 2+ in plants. The mRNA is cell-to-cell mobile.	annexin 1;(source:Araport11)
AT1G35730.1	protein_coding	pumilio 9	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 9;(source:Araport11)
AT1G35740.1	pseudogene			pseudogene of glucan synthase-like 9;(source:Araport11)
AT1G35750.1	protein_coding	pumilio 10	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 10;(source:Araport11)
AT1G35760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.7e-50 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G35770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G06860.1);(source:TAIR10)
AT1G35780.1	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT1G26130.1	protein_coding	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein		ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT1G52740.1	protein_coding	histone H2A protein 9	Encodes HTA9, a histone H2A protein. Loss of all H2A.Z (triple mutant with HTA8 and HTA11) results in a reduction in DNA methylation of transposons but not that of genes.  Loss of H2A.Z causes misregulation of many genes involved in the response to developmental and environmental cues, and that these genes tend to have high levels of gene-body H2A.Z.	histone H2A protein 9;(source:Araport11)
AT1G52830.1	protein_coding	indole-3-acetic acid 6	An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid.	indole-3-acetic acid 6;(source:Araport11)
AT1G52920.1	protein_coding	G protein coupled receptor	Encodes a plasma membrane–localized ABA receptor, which interacts with  the G&#945;&#946;&#947; complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into G&#945; and the G&#946;&#947; dimer to activate downstream ABA effectors and to trigger the ABA responses.	G protein coupled receptor;(source:Araport11)
AT1G52840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13865.1);(source:TAIR10)
AT1G52750.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-106 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G52930.1	protein_coding	Ribosomal RNA processing Brix domain protein	Encodes one of two Arabidopsis orthologs of yeast BRX1, a protein involved in maturation of the large ribosomal subunit.  The proteins are mainly localized in nucleolus.  Mutant plants are affected in pre-rRNA processing.	Ribosomal RNA processing Brix domain protein;(source:Araport11)
AT1G52870.1	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT1G52820.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G52760.1	protein_coding	lysophospholipase 2	Encodes caffeoyl shikimate esterase and is involved in lignin biosynthesis. CSE converts caffeoyl shikimate to caffiate. Loss of function mutations have reduced lignin content and collapsed vessel elements. It is also reported to function as a lysophospholipase 2 (LysoPL2) involved in tolerance to cadmium-induced oxidative stress.  Binds Acyl-CoA-binding protein 2 (ACBP2).	lysophospholipase 2;(source:Araport11)
AT1G52880.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	Transcription factor with a NAC domain.  Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G53020.1	pseudogene	UBC26 (UBIQUITIN-CONJUGATING ENZYME 26); ubiquitin-protein ligase		pseudogene of Ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT1G52890.1	protein_coding	NAC domain containing protein 19	encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.	NAC domain containing protein 19;(source:Araport11)
AT1G52900.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT1G52770.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G52910.1	protein_coding	Protein of unknown function (DUF1218)		fiber (DUF1218);(source:Araport11)
AT1G52780.1	protein_coding	Protein of unknown function (DUF2921)		PII, uridylyltransferase (DUF2921);(source:Araport11)
AT1G52790.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a putative oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to GS-AOP loci (GI:16118889, GI:16118887, GI:16118891, GI:16118893); contains PF03171 2OG-Fe(II) oxygenase superfamily domain	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G52800.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G52810.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G76620.1	protein_coding	Protein of unknown function, DUF547		Serine/Threonine-kinase, putative (Protein of unknown function, DUF547);(source:Araport11)
AT1G76550.1	protein_coding	Phosphofructokinase family protein		Phosphofructokinase family protein;(source:Araport11)
AT1G76560.1	protein_coding	CP12 domain-containing protein 3		CP12 domain-containing protein 3;(source:Araport11)
AT1G76570.1	protein_coding	Chlorophyll A-B binding family protein		Chlorophyll A-B binding family protein;(source:Araport11)
AT1G76500.1	protein_coding	Predicted AT-hook DNA-binding family protein	Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light	Putative AT-hook DNA-binding family protein;(source:Araport11)
AT1G76580.1	protein_coding	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein		Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein;(source:Araport11)
AT1G76510.1	protein_coding	ARID/BRIGHT DNA-binding domain-containing protein		ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT1G76590.1	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT1G76520.1	protein_coding	Auxin efflux carrier family protein		Auxin efflux carrier family protein;(source:Araport11)
AT1G76470.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G76530.1	protein_coding	Auxin efflux carrier family protein		Auxin efflux carrier family protein;(source:Araport11)
AT1G76600.1	protein_coding			poly polymerase;(source:Araport11)
AT1G76540.1	protein_coding	cyclin-dependent kinase B2;1	Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle.  Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling.	cyclin-dependent kinase B2;(source:Araport11)
AT1G76610.1	protein_coding	Protein of unknown function, DUF617		MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT1G56260.1	protein_coding		Required for the maintenance of stem cells through a reduction in DNA damage.	telomere-capping, CST complex subunit;(source:Araport11)
AT1G56250.1	protein_coding	phloem protein 2-B14	Encodes an F-box protein that can functionally replace VirF, regulating levels of the VirE2 and VIP1 proteins via a VBF-containing SCF complex.  It is thought to be involved in DNA integration and T-DNA degradation.	phloem protein 2-B14;(source:Araport11)
AT1G56330.1	protein_coding	secretion-associated RAS 1B	Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins.  A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.   The protein is found associated to the ER and free in the cytosol.	secretion-associated RAS 1B;(source:Araport11)
AT1G56240.1	protein_coding	phloem protein 2-B13		phloem protein 2-B13;(source:Araport11)
AT1G56320.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G56230.1	protein_coding	Protein of unknown function (DUF1399)		enolase (DUF1399);(source:Araport11)
AT1G56310.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	DEDDy-type 3&#8242; -> 5&#8242; exoribonuclease involved in miRNA degradation.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G56220.1	protein_coding	Dormancy/auxin associated family protein		Dormancy/auxin associated family protein;(source:Araport11)
AT1G56200.1	protein_coding	embryo defective 1303	Encodes a chloroplast localized protein that is essential for chloroplast development.	embryo defective 1303;(source:Araport11)
AT1G56210.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G56300.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G56290.1	protein_coding	CwfJ-like family protein		CwfJ-like family protein;(source:Araport11)
AT1G56280.1	protein_coding	drought-induced 19	Encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The increase in transcript level is independent from abscisic acid level. Sequence is not similar to any protein of known function. It appears to be a member of plant-specific gene family. It's phosphorylated by AtCPK11 in a Ca(2+)-dependent manner at Thr105 and Ser107 within the AtDi19 bipartite nuclear localization signal	drought-induced 19;(source:Araport11)
AT1G56270.1	protein_coding			RPB1a;(source:Araport11)
AT1G50280.1	protein_coding	Phototropic-responsive NPH3 family protein	BTB/POZ protein that forms a complex with CUL3a. Involved in repression of ABA responses.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G50400.1	protein_coding	Eukaryotic porin family protein		Eukaryotic porin family protein;(source:Araport11)
AT1G50270.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G50390.1	protein_coding	pfkB-like carbohydrate kinase family protein		pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT1G50370.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT1G50260.1	protein_coding	N-terminal-transmembrane-C2 domain type 5.1		N-terminal-transmembrane-C2 domain type 5.1;(source:Araport11)
AT1G50160.1	protein_coding			ribonuclease H superfamily polynucleotidyl transferase;(source:Araport11)
AT1G50360.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	member of Myosin-like proteins	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G50320.1	protein_coding	thioredoxin X	encodes a prokaryotic thioredoxin	thioredoxin X;(source:Araport11)
AT1G50350.1	protein_coding			E3 ubiquitin-protein ligase RING1-like protein;(source:Araport11)
AT1G50220.1	protein_coding			B3 domain protein;(source:Araport11)
AT1G50290.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G50250.1	protein_coding	FTSH protease 1	encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.	FTSH protease 1;(source:Araport11)
AT1G50310.1	protein_coding	sugar transporter 9	Sucrose transporter, expressed in pollen tubes.	sugar transporter 9;(source:Araport11)
AT1G50200.1	protein_coding	Alanyl-tRNA synthetase		Alanyl-tRNA synthetase;(source:Araport11)
AT1G50300.1	protein_coding	TBP-associated factor 15		TBP-associated factor 15;(source:Araport11)
AT1G50190.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G50180.1	protein_coding	NB-ARC domain-containing disease resistance protein		NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT1G50170.1	protein_coding	sirohydrochlorin ferrochelatase B	encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis	sirohydrochlorin ferrochelatase B;(source:Araport11)
AT1G50340.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G50380.1	protein_coding	Prolyl oligopeptidase family protein		Prolyl oligopeptidase family protein;(source:Araport11)
AT1G55900.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	component of a translocase in the mitochondrial inner membrane	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G55910.1	protein_coding	zinc transporter 11 precursor	member of Putative zinc transporter ZIP2 - like family	zinc transporter 11 precursor;(source:Araport11)
AT1G56000.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT1G55840.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G55930.1	protein_coding	CBS domain-containing protein / transporter associated domain-containing protein		CBS domain-containing protein / transporter associated domain-containing protein;(source:Araport11)
AT1G55850.1	protein_coding	cellulose synthase like E1	encodes a protein similar to cellulose synthase The mRNA is cell-to-cell mobile.	cellulose synthase like E1;(source:Araport11)
AT1G55940.1	protein_coding	cytochrome P450, family 708, subfamily A, polypeptide 1		cytochrome P450 family protein;(source:Araport11)
AT1G55860.1	protein_coding	ubiquitin-protein ligase 1	encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.	LOW protein: E3 ubiquitin ligase-like protein;(source:Araport11)
AT1G55950.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT1G56030.1	protein_coding	RING/U-box superfamily protein		RING/U-box protein;(source:Araport11)
AT1G55960.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G55920.1	protein_coding	serine acetyltransferase 2;1	Encodes a chloroplast/cytosol localized serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. The mRNA is cell-to-cell mobile.	serine acetyltransferase 2;(source:Araport11)
AT1G55870.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA. Functions with AGS1 to regulate the poly(A) status of mitochondrial mRNA.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G55880.1	protein_coding	Pyridoxal-5'-phosphate-dependent enzyme family protein		Pyridoxal-5-phosphate-dependent enzyme family protein;(source:Araport11)
AT1G55890.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Ribosomal pentatricopeptide repeat protein	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G49650.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G49780.1	protein_coding	plant U-box 26	PUB25 and PUB26 are closely related paralogs that encode functional E3 ligases. They function in immune response pathway by targeting BIK1 for degradation.	plant U-box 26;(source:Araport11)
AT1G49700.1	protein_coding	Plant protein 1589 of unknown function		Plant protein 1589 of unknown function;(source:Araport11)
AT1G49770.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a member of the basic helix loop helix family of transcription factors. Loss of RGE1 function causes shriveled seeds that contain small embryos. The cuticle in the embryos does not develop normally, possible due to the adeherence of the endosperm to the developing embryo. RGE1 is expressed in the endosperm surrounding region which directly surrounds the developing embryo, however it exerts its effect non autonomously- in the developing embryo. Mutant seedlings are extremely sensitive to desiccation due to the abnormal cuticle. Together with ICE1, ZOU determines primary seed dormancy depth independently of their joint role in endosperm development.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G49680.1	protein_coding			mutator transposase MUDRA protein;(source:Araport11)
AT1G49570.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT1G49760.1	protein_coding	poly(A) binding protein 8	polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.	poly(A) binding protein 8;(source:Araport11)
AT1G49670.1	protein_coding	ARP protein (REF)	molecular function has not been defined. Was shown involved in oxidative stress tolerance.	ARP protein (REF);(source:Araport11)
AT1G49750.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G49630.1	protein_coding	presequence protease 2	Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot.	presequence protease 2;(source:Araport11)
AT1G49740.1	protein_coding	PLC-like phosphodiesterases superfamily protein		PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT1G49620.1	protein_coding	Cyclin-dependent kinase inhibitor family protein	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Binds to D type cyclins and may inhibit cell cycle.	Cyclin-dependent kinase inhibitor family protein;(source:Araport11)
AT1G49730.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G49640.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G49610.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G49720.1	protein_coding	abscisic acid responsive element-binding factor 1	Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses.	abscisic acid responsive element-binding factor 1;(source:Araport11)
AT1G49600.1	protein_coding	RNA-binding protein 47A		RNA-binding protein 47A;(source:Araport11)
AT1G49710.1	protein_coding	fucosyltransferase 12	Encodes a protein with core &alpha;1,3-fucosyltransferase activity.	fucosyltransferase 12;(source:Araport11)
AT1G49590.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Encodes a novel nucleic acid-binding protein that is required for both RdDM (RNA-directed DNA methylation) and pre-mRNA splicing.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G49660.1	protein_coding	carboxyesterase 5	Encodes a protein with carboxylesterase whose activity was tested using pNA.	carboxyesterase 5;(source:Araport11)
AT1G49580.1	protein_coding	Calcium-dependent protein kinase (CDPK) family protein		Calcium-dependent protein kinase (CDPK) family protein;(source:Araport11)
AT1G09620.1	protein_coding	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases		ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase;(source:Araport11)
AT1G09550.1	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT1G09480.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase The mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G09380.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G09560.1	protein_coding	germin-like protein 5	Encodes a plasodesmata-located protein involved in regulating primary root growth by controlling phloem-mediated allocation of resources between the primary and lateral root meristems. The mRNA is cell-to-cell mobile.	germin-like protein 5;(source:Araport11)
AT1G09490.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G09390.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G09590.1	protein_coding	Translation protein SH3-like family protein		Translation protein SH3-like family protein;(source:Araport11)
AT1G09500.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G09400.1	protein_coding	FMN-linked oxidoreductases superfamily protein		FMN-linked oxidoreductases superfamily protein;(source:Araport11)
AT1G09600.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G09410.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G09570.1	protein_coding	phytochrome A	Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism.  Requires FHY1 for nuclear accumulation.	phytochrome A;(source:Araport11)
AT1G09420.1	protein_coding	glucose-6-phosphate dehydrogenase 4	Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH.  The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein.  gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.	glucose-6-phosphate dehydrogenase 4;(source:Araport11)
AT1G09430.1	protein_coding	ATP-citrate lyase A-3	Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL).  In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes).  The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity.	ATP-citrate lyase A-3;(source:Araport11)
AT1G09510.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G09350.1	protein_coding	galactinol synthase 3	Predicted to encode a galactinol synthase	galactinol synthase 3;(source:Araport11)
AT1G09440.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G09520.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G09580.1	protein_coding	emp24/gp25L/p24 family/GOLD family protein		emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT1G09450.1	protein_coding	Protein kinase superfamily protein	Encodes a protein kinase that phosphorylates histone H3 at Thr3 and Thr11 and plays a role in mitotic cell division.	Protein kinase superfamily protein;(source:Araport11)
AT1G09530.1	protein_coding	phytochrome interacting factor 3	Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a  significant role in controlling light input and function of the circadian  clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.	phytochrome interacting factor 3;(source:Araport11)
AT1G09610.1	protein_coding	Protein of unknown function (DUF579)		glucuronoxylan 4-O-methyltransferase-like protein (DUF579);(source:Araport11)
AT1G09460.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G09360.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G09370.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G09470.1	protein_coding		NEAP3 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.	myosin heavy chain, cardiac protein;(source:Araport11)
AT1G09540.1	protein_coding	myb domain protein 61	Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition.  Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.	myb domain protein 61;(source:Araport11)
AT1G68800.1	protein_coding	TCP domain protein 12	Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth. Transcription level and mutant phenotype are weaker than its homolog BRC1 (At3G18550).	TCP domain protein 12;(source:Araport11)
AT1G68790.1	protein_coding	little nuclei3	Member of small gene family in Arabidopsis containing 4 members (LNC1-4 or CRWN 1-4) with redundant functions in protection from oxidative damage, control of nuclear morphology and degradation of ABI5.	little nuclei3;(source:Araport11)
AT1G68780.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT1G68760.1	protein_coding	nudix hydrolase  1	Encodes a cytosol-localized nudix hydrolase that hydrolyzes 8-oxo-(d)GTP to its monophosphate form. This protective mechanism prevents the misincorporation of these oxidized nucleotides into DNA and RNA. NUDX1 also has a low level of dihydroneopterin triphosphate pyrophosphatase activity in vitro and may participate in the folate synthesis pathway.	nudix hydrolase 1;(source:Araport11)
AT1G68750.1	protein_coding	phosphoenolpyruvate carboxylase 4	Encodes one of four Arabidopsis phosphoenolpyruvate (PEP) carboxylase proteins. But, it is more similar to bacterial PEP carboxylase than plant PEP carboxylase. Efforts to express this enzyme and to demonstrate its enzymatic activity in E.coli failed.	phosphoenolpyruvate carboxylase 4;(source:Araport11)
AT1G14260.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G14360.1	protein_coding	UDP-galactose transporter 3		UDP-galactose transporter 3;(source:Araport11)
AT1G14270.1	protein_coding	CAAX amino terminal protease family protein		CAAX amino terminal protease family protein;(source:Araport11)
AT1G14370.1	protein_coding	protein kinase 2A	Encodes protein kinase APK2a. Protein is N-myristoylated.	protein kinase 2A;(source:Araport11)
AT1G14460.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT1G14280.1	protein_coding	phytochrome kinase substrate 2	Encodes phytochrome kinase substrate 2.  PKS proteins are critical for hypocotyl phototropism. Forms a complex with Phot1, Phot2 and NPH3.	phytochrome kinase substrate 2;(source:Araport11)
AT1G14380.1	protein_coding	IQ-domain 28	Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 28;(source:Araport11)
AT1G14290.1	protein_coding	sphingoid base hydroxylase 2	Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.	sphingoid base hydroxylase 2;(source:Araport11)
AT1G14470.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G14390.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G14300.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G14480.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT1G14490.1	protein_coding	Predicted AT-hook DNA-binding family protein		Putative AT-hook DNA-binding family protein;(source:Araport11)
AT1G14410.1	protein_coding	ssDNA-binding transcriptional regulator	Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.	ssDNA-binding transcriptional regulator;(source:Araport11)
AT1G14330.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G14500.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT1G14420.1	protein_coding	Pectate lyase family protein		Pectate lyase family protein;(source:Araport11)
AT1G14340.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	ACD11 binding partner, negatively regulates ROS-mediated defense response.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G14510.1	protein_coding	alfin-like 7	Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 7;(source:Araport11)
AT1G14430.1	protein_coding	glyoxal oxidase-related protein		glyoxal oxidase-related protein;(source:Araport11)
AT1G14350.1	protein_coding	Duplicated homeodomain-like superfamily protein	Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells.  This phenotype is enhanced in double mutants with MYB88. Its transcript levels change after inducing MUTE expression in a mute background. Also regulates female reproductive development.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT1G14450.1	protein_coding	NADH dehydrogenase (ubiquinone)s		NADH dehydrogenase (ubiquinone)s;(source:Araport11)
AT1G14440.1	protein_coding	homeobox protein 31		homeobox protein 31;(source:Araport11)
AT1G14320.1	protein_coding	Ribosomal protein L16p/L10e family protein	Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.	Ribosomal protein L16p/L10e family protein;(source:Araport11)
AT1G14310.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G14400.1	protein_coding	ubiquitin carrier protein 1	ubiquitin carrier protein	ubiquitin carrier protein 1;(source:Araport11)
AT1G33780.1	protein_coding	Protein of unknown function (DUF179)		electron transporter, putative (DUF179);(source:Araport11)
AT1G33670.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G33770.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G33760.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G33750.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT1G33730.1	protein_coding	cytochrome P450, family 76, subfamily C, polypeptide 5		cytochrome P450, family 76, subfamily C, polypeptide 5;(source:Araport11)
AT1G33810.1	protein_coding			zinc finger/BTB domain protein;(source:Araport11)
AT1G33720.1	protein_coding	cytochrome P450, family 76, subfamily C, polypeptide 6		cytochrome P450, family 76, subfamily C, polypeptide 6;(source:Araport11)
AT1G33710.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G33790.1	protein_coding	jacalin lectin family protein		jacalin lectin family protein;(source:Araport11)
AT1G33700.1	protein_coding	Beta-glucosidase, GBA2 type family protein		Beta-glucosidase, GBA2 type family protein;(source:Araport11)
AT1G33680.1	protein_coding	KH domain-containing protein		KH domain-containing protein;(source:Araport11)
AT1G33800.1	protein_coding	Protein of unknown function (DUF579)	Encodes a glucuronoxylan(GX)-speci&#64257;c 4-O-methyltransferase responsible for methylating GlcA residues in GX. Reduced methylation of GX ingxmt1-1 plants is correlated with altered lignin composition. The mRNA is cell-to-cell mobile.	glucuronoxylan 4-O-methyltransferase-like protein (DUF579);(source:Araport11)
AT1G10160.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.9e-39 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT1G10350.1	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT1G10280.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G10170.1	protein_coding	NF-X-like 1	Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1.  Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.	NF-X-like 1;(source:Araport11)
AT1G10360.1	protein_coding	glutathione S-transferase TAU 18	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 18;(source:Araport11)
AT1G10290.1	protein_coding	dynamin-like protein 6	involved in trafficking from the trans-Golgi Network to the central vacuole. The mRNA is cell-to-cell mobile.	dynamin-like protein 6;(source:Araport11)
AT1G10180.1	protein_coding			LOW protein: exocyst complex component-like protein;(source:Araport11)
AT1G10370.1	protein_coding	Glutathione S-transferase family protein	Encodes GSTU17 (Glutathione S-Transferase U17). Functions as a negative component of stress-mediated signal transduction pathways in drought and salt stress responses.	Glutathione S-transferase family protein;(source:Araport11)
AT1G10300.1	protein_coding	Nucleolar GTP-binding protein	GTPase  involved in HA - and ABA-mediated signaling pathways, particularly during defense respnses to pathogens. A truncated version of NOG1-2 has been detected in Col-0, Ler-0, Rsch-4 ecotypes. Functions similarly to the paralogous gene NOG1-1.	Nucleolar GTP-binding protein;(source:Araport11)
AT1G10190.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT1G10390.1	protein_coding	Nucleoporin autopeptidase	DRA2 is a homolog of mammalian nucleoporin 98 and a likely component of the nuclear pore complex in Arabidopsis. It positively participates in the control of the hypocotyl elongation response to plant proximity and control of shade induced gene expression. Nucleoportin which redundantly inhibits flowering together with Nup98b through multiple pathways including clock, photoperiod, and age pathways. Gates flowering in a CONSTANS (CO)-independent mode and bypasses the CO checkpoint in photoperiodic signaling and integrated signals from multiple pathways to directly target FLOWERING LOCUS T (FT) for flowering control.	Nucleoporin autopeptidase;(source:Araport11)
AT1G10310.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	encodes a NADPH-dependent pterin aldehyde reductase that accepts pterin aldehyde as well as dihydropterin aldehyde as substrates involved in metabolism and salvage of folate and its derivatives.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G10200.1	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT1G10150.1	protein_coding	Carbohydrate-binding protein		Carbohydrate-binding protein;(source:Araport11)
AT1G10210.1	protein_coding	mitogen-activated protein kinase 1	Encodes ATMPK1.	mitogen-activated protein kinase 1;(source:Araport11)
AT1G10400.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G10220.1	protein_coding			ZCF37;(source:Araport11)
AT1G10230.1	protein_coding	SKP1-like 18		E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein;(source:Araport11)
AT1G10240.1	protein_coding	FAR1-related sequence 11		FAR1-related sequence 11;(source:Araport11)
AT1G10140.1	protein_coding	Uncharacterised conserved protein UCP031279		Uncharacterized conserved protein UCP031279;(source:Araport11)
AT1G10250.1	protein_coding			paired amphipathic helix Sin3-like protein;(source:Araport11)
AT1G10320.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G10410.1	protein_coding	Protein of unknown function (DUF1336)		CW14 protein (DUF1336);(source:Araport11)
AT1G10260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.6e-19 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT1G10330.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G10380.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT1G10270.1	protein_coding	glutamine-rich protein 23		glutamine-rich protein 23;(source:Araport11)
AT1G10340.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT1G20300.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G20380.1	protein_coding	Prolyl oligopeptidase family protein		Prolyl oligopeptidase family protein;(source:Araport11)
AT1G20290.1	protein_coding	SWI-SNF-related chromatin binding protein		SWI-SNF-related chromatin binding protein;(source:Araport11)
AT1G20370.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT1G20270.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G20360.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G20260.1	protein_coding	ATPase, V1 complex, subunit B protein	One of three genes encoding the vacuolar ATP synthase subunit B1.  The protein binds to and co-localizes with F-actin, bundles F-actin to form higher-order structure, and stabilizes actin filaments in vitro. The mRNA is cell-to-cell mobile.	ATPase, V1 complex, subunit B protein;(source:Araport11)
AT1G20350.1	protein_coding	translocase inner membrane subunit 17-1	mitochondrial inner membrane translocase	translocase inner membrane subunit 17-1;(source:Araport11)
AT1G20240.1	protein_coding	SWI-SNF-related chromatin binding protein		SWI-SNF-related chromatin binding protein;(source:Araport11)
AT1G20340.1	protein_coding	Cupredoxin superfamily protein	recombination and DNA-damage resistance protein (DRT112)  One of two Arabidopsis plastocyanin genes. Predominant form, expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis. Mutation of this gene does not have obvious effect on photosynthesis. In plsp1-1 mutant plastids, the nonmature form of the protein localizes in the membrane.	Cupredoxin superfamily protein;(source:Araport11)
AT1G20280.1	protein_coding	homeobox-leucine zipper protein-related		homeobox-leucine zipper protein-like protein;(source:Araport11)
AT1G20330.1	protein_coding	sterol methyltransferase 2	Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition, serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication.  This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression.	sterol methyltransferase 2;(source:Araport11)
AT1G20320.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G20310.1	protein_coding			syringolide-induced protein;(source:Araport11)
AT1G71840.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT1G71740.1	protein_coding			nucleolar protein;(source:Araport11)
AT1G71850.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT1G71750.1	protein_coding	Hypoxanthine-guanine phosphoribosyltransferase	Encodes a protein with  hypoxanthine-guanine-phosphoribosyltransferase activity. Unlike some related enzymes, it does not appear to act on xanthine in vitro. The enzyme catalyzes reactions occurring in both directions, but appears to prefer acting on guanine, followed by hypoxanthine, in vitro. The enzyme is likely to function in purine salvage pathways and appears to be important for seed germination.	Hypoxanthine-guanine phosphoribosyltransferase;(source:Araport11)
AT1G71860.1	protein_coding	protein tyrosine phosphatase 1	Encodes a protein with  tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.	protein tyrosine phosphatase 1;(source:Araport11)
AT1G71760.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G71770.1	protein_coding	poly(A)-binding protein 5	Encodes a Class I polyA-binding protein. Expressed in floral organs. Binds polyA sepharose in vitro.	poly(A)-binding protein 5;(source:Araport11)
AT1G71800.1	protein_coding	cleavage stimulating factor 64	RNA 3&#8242;-end?processing factor of antisense FLC transcript. Mediates silencing of the floral repressor gene FLC. Member of CstF complex.	cleavage stimulating factor 64;(source:Araport11)
AT1G71830.1	protein_coding	somatic embryogenesis receptor-like kinase 1	Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development  controlling male gametophyte production.  SERK1 interacts with and transphosphorylates EMS1	somatic embryogenesis receptor-like kinase 1;(source:Araport11)
AT1G71790.1	protein_coding	Subunits of heterodimeric actin filament capping protein Capz superfamily	Encodes a heterodimeric actin binding protein composed of an alpha and a beta sumunit. Stabilizes actin filament cytoskeleton by capping.	Subunits of heterodimeric actin filament capping protein Capz superfamily;(source:Araport11)
AT1G71710.1	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT1G71780.1	protein_coding			WD repeat protein;(source:Araport11)
AT1G71810.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G71820.1	protein_coding	SEC6	Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.	SEC6;(source:Araport11)
AT1G71720.1	protein_coding	Nucleic acid-binding proteins superfamily	Encodes a chloroplast localized protein that regulates the translation of Ycf1 by binding to its mRNA. It is involved in the biogenesis of photosynthetic complexes.	Nucleic acid-binding proteins superfamily;(source:Araport11)
AT1G71730.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G19650.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G19640.1	protein_coding	jasmonic acid carboxyl methyltransferase	Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid.  Its expression is induced in response to wounding or methyljasmonate treatment.	jasmonic acid carboxyl methyltransferase;(source:Araport11)
AT1G19630.1	protein_coding	cytochrome P450, family 722, subfamily A, polypeptide 1		cytochrome P450, family 722, subfamily A, polypeptide 1;(source:Araport11)
AT1G19660.1	protein_coding	Wound-responsive family protein		Wound-responsive family protein;(source:Araport11)
AT1G36180.1	protein_coding	acetyl-CoA carboxylase 2	acetyl-CoA carboxylase 2 (ACC2) The mRNA is cell-to-cell mobile.	acetyl-CoA carboxylase 2;(source:Araport11)
AT1G36260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-91 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G36230.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G36240.1	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT1G36190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 8.5e-119 P-value blast match to At1g36190.1/92-340 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G36280.1	protein_coding	L-Aspartase-like family protein		L-Aspartase-like family protein;(source:Araport11)
AT1G29400.1	protein_coding	MEI2-like protein 5	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML5 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML5 is the transcript with highest frequency of alternative splicing. Expression was detected during embryo development (heart and torpedo stage) and in vegetative and floral apices.	MEI2-like protein 5;(source:Araport11)
AT1G29410.1	protein_coding	phosphoribosylanthranilate isomerase 3	Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.	phosphoribosylanthranilate isomerase 3;(source:Araport11)
AT1G29430.1	protein_coding	SAUR-like auxin-responsive protein family 	SAUR762 expression is induced during pollination and expressed in pollen tubes.  SAUR62 likely functions in translation of proteins required for pollen tube development/function.	SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G29440.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G29600.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G29450.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G29460.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G29620.1	protein_coding	Cytochrome C oxidase polypeptide VIB family protein		Cytochrome C oxidase polypeptide VIB family protein;(source:Araport11)
AT1G29470.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G29630.1	protein_coding	5'-3' exonuclease family protein		5-3 exonuclease family protein;(source:Araport11)
AT1G29640.1	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT1G29480.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G29650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.5e-28 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G29490.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G29660.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G29670.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates. The mRNA is cell-to-cell mobile.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G29680.1	protein_coding	Protein of unknown function (DUF1264)		histone acetyltransferase (DUF1264);(source:Araport11)
AT1G29690.1	protein_coding	MAC/Perforin domain-containing protein	Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic <i>cad1-1</i> mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.	MAC/Perforin domain-containing protein;(source:Araport11)
AT1G29320.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G29340.1	protein_coding	plant U-box 17	Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins  against Pseudomonas syringae pv tomato. The mRNA is cell-to-cell mobile.	plant U-box 17;(source:Araport11)
AT1G29350.1	protein_coding	Kinase-related protein of unknown function (DUF1296)		RNA polymerase II degradation factor-like protein (DUF1296);(source:Araport11)
AT1G29500.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G29510.1	protein_coding	SAUR-like auxin-responsive protein family	This locus was referred to as SAUR68 in PMID:17948056 but the nomenclature should be SAUR67.	SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G29520.1	protein_coding	AWPM-19-like family protein		AWPM-19-like family protein;(source:Araport11)
AT1G29370.1	protein_coding	Kinase-related protein of unknown function (DUF1296)		RNA polymerase II degradation factor-like protein (DUF1296);(source:Araport11)
AT1G29530.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G29380.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G29540.1	protein_coding			LOW protein: protein BOBBER-like protein;(source:Araport11)
AT1G29710.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G29390.1	protein_coding	cold regulated 314 thylakoid membrane 2	Integral membrane protein in the inner  envelope of chloroplasts. Provide  freezing tolerance.	cold regulated 314 thylakoid membrane 2;(source:Araport11)
AT1G29550.1	protein_coding	Eukaryotic initiation factor 4E protein		Eukaryotic initiation factor 4E protein;(source:Araport11)
AT1G29420.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G29560.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G29570.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G29580.1	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT1G29590.1	protein_coding	Eukaryotic initiation factor 4E protein		translation initiation factor;(source:Araport11)
AT1G66040.1	protein_coding	Zinc finger (C3HC4-type RING finger) family protein	predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.	Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G66130.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G66020.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT1G66060.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein (DUF577);(source:Araport11)
AT1G66140.1	protein_coding	zinc finger protein 4	Encodes a zinc finger protein containing only a single zinc finger.	zinc finger protein 4;(source:Araport11)
AT1G66150.1	protein_coding	transmembrane kinase 1	receptor-like transmembrane kinase I (TMK1)	transmembrane kinase 1;(source:Araport11)
AT1G66070.1	protein_coding	Translation initiation factor eIF3 subunit		Translation initiation factor eIF3 subunit;(source:Araport11)
AT1G66100.1	protein_coding	Plant thionin	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	Plant thionin;(source:Araport11)
AT1G66050.1	protein_coding	Zinc finger (C3HC4-type RING finger) family protein	Encodes a protein that is similar to VIM1 but is not involved in cytosine methylation. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. ORTH5/VIM2 has E3 ubiquitin ligase activity in vitro.	Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G66170.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein	Encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to nuclear euchromatin   specifically during diplotene. Required to regulate microtubule organization and cell cycle transitions during male meiosis, and functions as a direct transcription activator of the meiotic gene TDM1.	RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G66160.1	protein_coding	CYS, MET, PRO, and GLY protein 1		CYS, MET, PRO, and GLY protein 1;(source:Araport11)
AT1G66080.1	protein_coding		Encodes a glucose-regulated protein that binds to the promoters of glucose-regulated heat shock responsive genes and promotes chromatin acetylation. HLP1 is required in maintaining histone H3K acetylation and H3K4 methylation marks at the promoters of heat shock protein genes in providing thermotolerance/thermomemory response.	hikeshi-like protein;(source:Araport11)
AT1G66120.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G66180.1	protein_coding	Eukaryotic aspartyl protease family protein	The gene encodes a putative aspartyl protease (ASP). Its expression is induced in response to light and ascorbate. The mRNA is cell-to-cell mobile.	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G66190.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G66090.1	protein_coding	Disease resistance protein (TIR-NBS class)		Disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G66200.1	protein_coding	glutamine synthase clone F11	encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium	hypothetical protein;(source:Araport11)
AT1G66110.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein (DUF577);(source:Araport11)
AT1G66030.1	pseudogene	cytochrome P450, family 96, subfamily A, polypeptide 14 pseudogene	Encodes a protein with cytochrome P450 domain. Probable psuedogene.	cytochrome P450, family 96, subfamily A, polypeptide 14 pseudogene;(source:Araport11)
AT1G70870.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G70960.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G70880.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G70850.1	protein_coding	MLP-like protein 34		MLP-like protein 34;(source:Araport11)
AT1G70900.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G71000.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G70910.1	protein_coding	RING/U-box superfamily protein	Encodes DESPIERTO (DEP), a RING finger protein involved in ABA sensitivity during seed development.  Regulates the expression of ABI3, and produces a complete loss of dormancy when mutated.	RING/U-box superfamily protein;(source:Araport11)
AT1G70890.1	protein_coding	MLP-like protein 43		MLP-like protein 43;(source:Araport11)
AT1G70840.1	protein_coding	MLP-like protein 31		MLP-like protein 31;(source:Araport11)
AT1G70940.1	protein_coding	Auxin efflux carrier family protein	A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in regulating PIN3 trafficking to  the plasma membrane. The mRNA is cell-to-cell mobile.	Auxin efflux carrier family protein;(source:Araport11)
AT1G70920.1	protein_coding	homeobox-leucine zipper protein 18		homeobox-leucine zipper protein 18;(source:Araport11)
AT1G70950.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family		TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT1G71020.1	protein_coding	ARM repeat superfamily protein	Encodes a nuclear localized plant U-Box protein that interacts with MYC2 and regulates its stability by acting as an E3 ubiquitin ligase and polyubiquitinating MYC2. By this mechanism, it targets MYC2 for destruction thereby affecting JA signaling.	ARM repeat superfamily protein;(source:Araport11)
AT1G70970.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G70830.1	protein_coding	MLP-like protein 28		MLP-like protein 28;(source:Araport11)
AT1G70980.1	protein_coding	Class II aminoacyl-tRNA and biotin synthetases superfamily protein		Class II aminoacyl-tRNA and biotin synthetases superfamily protein;(source:Araport11)
AT1G70990.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT1G70810.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G70820.1	protein_coding	phosphoglucomutase, putative / glucose phosphomutase, putative		phosphoglucomutase, putative / glucose phosphomutase;(source:Araport11)
AT1G18520.1	protein_coding	tetraspanin11	Member of TETRASPANIN family	tetraspanin11;(source:Araport11)
AT1G18510.1	protein_coding	tetraspanin 16	Member of TETRASPANIN family	tetraspanin;(source:Araport11)
AT1G18370.1	protein_coding	ATP binding microtubule motor family protein	Encodes a kinesin HINKEL. Required for cytokinesis in pollen. Mutant has cytokinesis defects; seedling lethal.	ATP binding microtubule motor family protein;(source:Araport11)
AT1G18480.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT1G18360.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G18470.1	protein_coding	Transmembrane Fragile-X-F-associated protein		Transmembrane Fragile-X-F-associated protein;(source:Araport11)
AT1G18350.1	protein_coding	MAP kinase kinase 7	MAP kinase kinase7. Member  of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport.  Overexpression leads to activation of basal and systemic acquired resistance.	MAP kinase kinase 7;(source:Araport11)
AT1G18450.1	protein_coding	actin-related protein 4	Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component  of chromatin remodeling complexes, involved in chromatin-mediated gene regulation.  Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.	actin-related protein 4;(source:Araport11)
AT1G18260.1	protein_coding	HCP-like superfamily protein	Encodes an Arabidopsis homolog of the yeast Hrd3/mammlian Sel1L protein. Involved in ERAD (Endoplasmic reticulum-associated degradation).	HCP-like superfamily protein;(source:Araport11)
AT1G18330.1	protein_coding	Homeodomain-like superfamily protein	EARLY-PHYTOCHROME-RESPONSIVE1	Homeodomain-like superfamily protein;(source:Araport11)
AT1G18420.1	protein_coding	Aluminium activated malate transporter family protein	Involved in malate efflux response to P-deficiency in root hairs.	aluminum activated malate transporter family protein;(source:Araport11)
AT1G18340.1	protein_coding	basal transcription factor complex subunit-related		basal transcription factor complex subunit-like protein;(source:Araport11)
AT1G18410.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G18440.1	protein_coding	Peptidyl-tRNA hydrolase family protein		Peptidyl-tRNA hydrolase family protein;(source:Araport11)
AT1G18320.1	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein		Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT1G18400.1	protein_coding	BR enhanced expression 1	Encodes the brassinosteroid signaling component BEE1 (BR-ENHANCED EXPRESSION 1). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	BR enhanced expression 1;(source:Araport11)
AT1G18310.1	protein_coding	glycosyl hydrolase family 81 protein		glycosyl hydrolase family 81 protein;(source:Araport11)
AT1G18390.1	protein_coding	Protein kinase superfamily protein		Serine/Threonine kinase family catalytic domain protein;(source:Araport11)
AT1G18460.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Alpha/beta hydrolase	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G18490.1	protein_coding	Protein of unknown function (DUF1637)		2-aminoethanethiol dioxygenase, putative (DUF1637);(source:Araport11)
AT1G18500.1	protein_coding	methylthioalkylmalate synthase-like 4	Encodes an active Arabidopsis isopropylmalate synthase IPMS1.  Involved in leucine biosynthesis.  Do not participate in the chain elongation of glucosinolates.  Expressed constitutively throughout the plant. Loss of IPMS1 can be compensated by a second isopropylmalate synthase gene IPMS2 (At1g74040). The mRNA is cell-to-cell mobile.	methylthioalkylmalate synthase-like 4;(source:Araport11)
AT1G64380.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G64290.1	protein_coding	F-box protein-related		F-box protein-like protein;(source:Araport11)
AT1G64370.1	protein_coding			filaggrin-like protein;(source:Araport11)
AT1G64280.1	protein_coding	regulatory protein (NPR1)	This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens.	regulatory protein (NPR1);(source:Araport11)
AT1G64390.1	protein_coding	glycosyl hydrolase 9C2		glycosyl hydrolase 9C2;(source:Araport11)
AT1G64350.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	seh1-like protein	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G64270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.0e-06 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G64340.1	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT1G64260.1	protein_coding	MuDR family transposase		MuDR family transposase;(source:Araport11)
AT1G64330.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT1G64320.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT1G64300.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT1G64410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52960.1);(source:TAIR10)
AT1G64400.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G64310.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a pentatricopeptide repeat (PPR) protein involved in RNA editing in mitochondria.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G64360.1	protein_coding		SAQR is a clade specific protein present in single copy in Arabidopsis.It's expression is increased during light induced oxidative stress ,drought stress and also during senescence. Promoter contains two AGL15 binding sites.	hypothetical protein;(source:Araport11)
AT1G54070.1	protein_coding	Dormancy/auxin associated family protein		Dormancy/auxin associated family protein;(source:Araport11)
AT1G54170.1	protein_coding	CTC-interacting domain 3	ataxin-2-related, similar to SCA2 (GI:1770390) (Homo sapiens); similar to ataxin-2 (GI:3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins.	CTC-interacting domain 3;(source:Araport11)
AT1G54130.1	protein_coding	RELA/SPOT homolog 3	This gene appears to be at least partially redundant with RSH2 (At3g14050). Guanosine tetraphosphate synthesized by RSH2/RSH3 (and CRSH At3g17470) to an unknown extent can repress chloroplast gene expression, and also reduce chloroplast size.	RELA/SPOT homolog 3;(source:Araport11)
AT1G54080.1	protein_coding	oligouridylate-binding protein 1A		oligouridylate-binding protein 1A;(source:Araport11)
AT1G54180.1	protein_coding	BREVIS RADIX-like 3	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	BREVIS RADIX-like 3;(source:Araport11)
AT1G54140.1	protein_coding	TATA binding protein associated factor 21kDa subunit	putative TATA binding protein associated factor 21kDa	TATA binding protein associated factor 21kDa subunit;(source:Araport11)
AT1G54090.1	protein_coding	exocyst subunit exo70 family protein D2	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein D2;(source:Araport11)
AT1G54110.1	protein_coding	Membrane fusion protein Use1		Membrane fusion protein Use1;(source:Araport11)
AT1G54020.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G54000.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G54160.1	protein_coding	nuclear factor Y, subunit A5	Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in  response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought.	nuclear factor Y, subunit A5;(source:Araport11)
AT1G54100.1	protein_coding	aldehyde dehydrogenase 7B4	Aldehyde dehydrogenase	aldehyde dehydrogenase 7B4;(source:Araport11)
AT1G54030.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	Encodes a vacuolar protein.  Mutation causes organizational defects in the endoplasmic reticulum and aberrant protein trafficking in the plant secretory pathway. The mRNA is cell-to-cell mobile.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G54010.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G54040.1	protein_coding	epithiospecifier protein	Epithiospecifier protein, interacts with WRKY53. Involved in pathogen resistance and leaf senescence.	epithiospecifier protein;(source:Araport11)
AT1G54150.1	protein_coding	E3 Ubiquitin ligase family protein	Encodes a chloroplast-localized putative RING-type ubiquitin E3 ligase.	E3 Ubiquitin ligase family protein;(source:Araport11)
AT1G54050.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G54120.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G54060.1	protein_coding	6B-interacting protein 1-like 1	Member of the trihelix DNA binding protein family. Nuclear localized. Involved in repressing seed maturation genes during seed germination and seedling development.	6B-interacting protein 1-like 1;(source:Araport11)
AT1G53990.1	protein_coding	GDSL-motif lipase 3	Contains lipase signature motif and GDSL domain. The mRNA is cell-to-cell mobile.	GDSL-motif lipase 3;(source:Araport11)
AT1G03350.1	protein_coding	BSD domain-containing protein		BSD domain-containing protein;(source:Araport11)
AT1G03230.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G03340.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G03220.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G03330.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT1G03210.1	protein_coding	Phenazine biosynthesis PhzC/PhzF protein		Phenazine biosynthesis PhzC/PhzF protein;(source:Araport11)
AT1G03320.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G03200.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G03310.1	protein_coding	debranching enzyme 1	Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex.  Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.	debranching enzyme 1;(source:Araport11)
AT1G03300.1	protein_coding	DOMAIN OF UNKNOWN FUNCTION 724 1	Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype	agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1);(source:Araport11)
AT1G03370.1	protein_coding	C2 calcium/lipid-binding and GRAM domain containing protein		C2 calcium/lipid-binding and GRAM domain containing protein;(source:Araport11)
AT1G03280.1	protein_coding	Transcription factor TFIIE, alpha subunit		Transcription factor TFIIE, alpha subunit;(source:Araport11)
AT1G03270.1	protein_coding	CBS domain-containing protein with a domain of unknown function (DUF21)		CBS domain protein with a domain protein (DUF21);(source:Araport11)
AT1G03190.1	protein_coding	RAD3-like DNA-binding helicase protein	UV damage and heat induce a common stress response in plants that leads to tissue death and reduced chloroplast function. The UVH6 product is suggested to be a negative regulator of this response.	RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G03260.1	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT1G03360.1	protein_coding	ribosomal RNA processing 4	Encodes a core subunit of the RNA exosome required for the processing of rRNA, several snoRNA and the degradation of aberrant transcripts.	ribosomal RNA processing 4;(source:Araport11)
AT1G03290.1	protein_coding			ELKS/Rab6-interacting/CAST family protein;(source:Araport11)
AT1G03250.1	protein_coding			R3H domain protein;(source:Araport11)
AT1G03180.1	protein_coding			non-structural protein;(source:Araport11)
AT1G03240.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G03170.1	protein_coding	Protein of unknown function (DUF3049)	A member of the FAF family proteins encoded by the FANTASTIC FOUR (FAF) genes:   AT4G02810 (FAF1), AT1G03170 (FAF2), AT5G19260 (FAF3) and AT3G06020 (FAF4).  FAFs have the potential to regulate shoot meristem size in Arabidopsis thaliana. FAFs can repress WUS, which ultimately leads to an arrest of meristem activity in FAF overexpressing lines.	FANTASTIC four-like protein (DUF3049);(source:Araport11)
AT1G76400.1	protein_coding	Ribophorin I		Ribophorin I;(source:Araport11)
AT1G76390.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G76380.1	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT1G76370.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G76360.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G76350.1	protein_coding	Plant regulator RWP-RK family protein		Plant regulator RWP-RK family protein;(source:Araport11)
AT1G76260.1	protein_coding	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2		DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2;(source:Araport11)
AT1G35560.1	protein_coding	TCP family transcription factor 	Encodes a member of the TCP-P subfamily that is involved in flowering time control and plant development. Mutants present an early flowering phenotype.	TCP family transcription factor;(source:Araport11)
AT1G35510.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G35570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1);(source:TAIR10)
AT1G35580.1	protein_coding	cytosolic invertase 1	CINV1 / A/N-InvG is an alkaline/neutral invertase that breaks sucrose down into fructose and glucose (GH100). The exact localization of CINV1 remains under investigation but there is evidence that fluorescently-tagged CINV1 localizes to the cytoplasm. atinvg mutants have reduced root growth, reduced invertase activity, and increased expression of antioxidant genes under basal conditions. The levels of CINV1 / A/N-InvG transcripts rise in response to a hydrogen peroxide treatment. The protein has been shown to interact with PIP5K9.	cytosolic invertase 1;(source:Araport11)
AT1G35620.1	protein_coding	PDI-like 5-2	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants. The mRNA is cell-to-cell mobile.	PDI-like 5-2;(source:Araport11)
AT1G35520.1	protein_coding	auxin response factor 15		auxin response factor 15;(source:Araport11)
AT1G35670.1	protein_coding	calcium-dependent protein kinase 2	Encodes a Ca(2+)-dependent, calmodulin-independent protein kinase that is rapidly induced by drought and high-salt stress but not by low-temperature stress or heat stress. Positive regulator of ABA signaling. Phosphorylates ABA responsive transcription factors ABF1 and ABF4.	calcium-dependent protein kinase 2;(source:Araport11)
AT1G35590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-150 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT1G35530.1	protein_coding	DEAD/DEAH box RNA helicase family protein 	Encodes FANCM, a highly conserved helicase that functions as a major factor limiting meiotic crossover formation. It is not directly involved in the repair of DNA lesions but suppresses spontaneous somatic homologous recombination via a RecQ helicase (At-RECQ4A)-independent pathway.	DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT1G35640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT1G35680.1	protein_coding	Ribosomal protein L21	Encodes a chloroplast ribosomal protein L21 that is required for chloroplast development and embryogenesis. The mRNA is cell-to-cell mobile.	Ribosomal protein L21;(source:Araport11)
AT1G35600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.1e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G35610.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G35630.1	protein_coding	Protease-associated (PA) RING/U-box zinc finger family protein		Protease-associated (PA) RING/U-box zinc finger family protein;(source:Araport11)
AT1G35540.1	protein_coding	auxin response factor 14		auxin response factor 14;(source:Araport11)
AT1G35660.1	protein_coding			erythroid differentiation factor-like protein;(source:Araport11)
AT1G35550.1	protein_coding	elongation factor Tu C-terminal domain-containing protein		elongation factor Tu C-terminal domain-containing protein;(source:Araport11)
AT1G13790.1	protein_coding	XH/XS domain-containing protein	Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).	XH/XS domain-containing protein;(source:Araport11)
AT1G13800.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a PPR (pentatricopeptide repeat motif) protein that is essential for the initiation of zygotic embryogenesis.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G13820.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G13860.1	protein_coding	QUASIMODO2 LIKE 1	Encodes QUASIMODO2 LIKE1 (QUL1), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.	QUASIMODO2 LIKE 1;(source:Araport11)
AT1G13870.1	protein_coding	calmodulin binding;purine nucleotide binding	Encodes a homolog of the yeast TOT4/KTI12 protein.  Yeast TOT4/KTI12 associates with Elongator, a multisubunit complex that binds the RNA polymerase II transcription elongation complex. Ds insertion mutant has enlarged shoot apical region, 4 to 6 long slender leaves followed by spike-like structures, short roots.  Mutants also have no ncm5U (5-carbamoylmethyluridine).	KTI12-like, chromatin associated protein;(source:Araport11)
AT1G13890.1	protein_coding	soluble N-ethylmaleimide-sensitive factor adaptor protein 30	Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.	soluble N-ethylmaleimide-sensitive factor adaptor protein 30;(source:Araport11)
AT1G13830.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G13900.1	protein_coding	Purple acid phosphatases superfamily protein	Encodes a dual-localized acid phosphatase (mitochondria and chloroplast) that modulates carbon metabolism.	Purple acid phosphatases superfamily protein;(source:Araport11)
AT1G13910.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G13780.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G13810.1	protein_coding	Restriction endonuclease, type II-like superfamily protein		Restriction endonuclease, type II-like superfamily protein;(source:Araport11)
AT1G13880.1	protein_coding	ELM2 domain-containing protein		ELM2 domain-containing protein;(source:Araport11)
AT1G21240.1	protein_coding	wall associated kinase 3	encodes a wall-associated kinase The mRNA is cell-to-cell mobile.	wall associated kinase 3;(source:Araport11)
AT1G21250.1	protein_coding	cell wall-associated kinase	Encodes a cell wall-associated kinase that interacts with AtGRP3 and may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. The mRNA is cell-to-cell mobile.	cell wall-associated kinase;(source:Araport11)
AT1G21280.1	protein_coding			Copia-like polyprotein/retrotransposon;(source:Araport11)
AT1G21270.1	protein_coding	wall-associated kinase 2	cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.	wall-associated kinase 2;(source:Araport11)
AT1G21290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.7e-25 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G21190.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT1G21300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.9e-15 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G21320.1	protein_coding	nucleotide binding;nucleic acid binding		nucleic acid/nucleotide binding protein;(source:Araport11)
AT1G21200.1	protein_coding	sequence-specific DNA binding transcription factors		sequence-specific DNA binding transcription factor;(source:Araport11)
AT1G21310.1	protein_coding	extensin 3	Encodes extensin 3.	extensin 3;(source:Araport11)
AT1G21210.1	protein_coding	wall associated kinase 4	cell wall-associated ser/thr kinase involved in cell elongation and lateral root development	wall associated kinase 4;(source:Araport11)
AT1G21220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.9e-26 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G21230.1	protein_coding	wall associated kinase 5	encodes a wall-associated kinase The mRNA is cell-to-cell mobile.	wall associated kinase 5;(source:Araport11)
AT1G65080.1	protein_coding	Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain		Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT1G65030.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G65040.1	protein_coding	RING/U-box superfamily protein	Encodes one of the Arabidopsis homologs of the yeast/human Hrd1 protein: AT3G16090 (Hrd1A), AT1G65040 (Hrd1B). Involved in ERAD (Endoplasmic reticulum-associated degradation).	RING/U-box superfamily protein;(source:Araport11)
AT1G65050.1	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT1G65060.1	protein_coding	4-coumarate:CoA ligase 3	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica.  mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and  bolting stems of mature plants.  The catalytic efficiency was in the following (descending) order:  p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.	4-coumarate:CoA ligase 3;(source:Araport11)
AT1G65070.1	protein_coding	DNA mismatch repair protein MutS, type 2		DNA mismatch repair protein MutS, type 2;(source:Araport11)
AT1G22170.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT1G22250.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G22260.1	protein_coding	Myosin heavy chain-related protein	One of two nearly identical proteins (ZYP1b) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.	Myosin heavy chain-related protein;(source:Araport11)
AT1G22240.1	protein_coding	pumilio 8	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 8;(source:Araport11)
AT1G22230.1	protein_coding			nucleolar GTP-binding protein;(source:Araport11)
AT1G22220.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G22210.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G22200.1	protein_coding	Endoplasmic reticulum vesicle transporter protein		Endoplasmic reticulum vesicle transporter protein;(source:Araport11)
AT1G22190.1	protein_coding	Integrase-type DNA-binding superfamily protein	The gene encodes a putative transcription factor belongings to the abiotic stress-associated DREB A-6 clade. The mRNA is cell-to-cell mobile.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G22180.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G63010.1	protein_coding	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein	Encodes an SPX domain protein that transports Pi into the vacuole and is essential for phosphate homeostasis.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT1G63200.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT1G63040.1	pseudogene		a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY.	pseudogene of Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G63110.1	protein_coding	GPI transamidase subunit PIG-U		GPI transamidase subunit PIG-U;(source:Araport11)
AT1G63050.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein	Encodes a lysophosphatidylcholine acyltransferase (LPCAT). Participates in the Lands cycle in developing seeds. Involved in triacylglycerol biosynthesis.	MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT1G63120.1	protein_coding	RHOMBOID-like 2	AtRBL2 has been identified as a rhomboid protein involved in regulated intramembrane proteolysis (RIP). The enzyme has the proteolytic activity and substrate specificity comparable to the Drosophila Rho-1 protein.	RHOMBOID-like 2;(source:Araport11)
AT1G63060.1	protein_coding			ribosome biogenesis NEP1-like protein;(source:Araport11)
AT1G63130.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Transacting siRNA generating locus. Its derived siR9as targets AT1G62930 for cleavage. Itself is targeted by TAS2-derived ta-siR2140 for cleavage.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G63150.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Transacting siRNA generating locus.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G63070.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G63140.1	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT1G63080.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Transacting siRNA generating locus. Is targeted by TAS2-derived ta-siR2140 for cleavage.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G63160.1	protein_coding	replication factor C 2		replication factor C 2;(source:Araport11)
AT1G63090.1	protein_coding	phloem protein 2-A11		phloem protein 2-A11;(source:Araport11)
AT1G63100.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT1G63170.1	protein_coding	Zinc finger, C3HC4 type (RING finger) family protein		Zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT1G63180.1	protein_coding	UDP-D-glucose/UDP-D-galactose 4-epimerase 3	Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development.	UDP-D-glucose/UDP-D-galactose 4-epimerase 3;(source:Araport11)
AT1G63190.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT1G58250.1	protein_coding	Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain	SABRE, putative gene of unknown function, homologous to maize apt1 gene. Required for normal cell expansion in the root cortex. The sabre mutation results in abnormal cell expansion. Encodes a rare message; very low level of expression was detected in roots and shoots.	HYPERSENSITIVE TO PI STARVATION 4;(source:Araport11)
AT1G58260.1	protein_coding	cytochrome p450 79c2	member of CYP79C subfamily of cytochrome p450s. Encodes a putative xylan endohydrolase. similar to some closely linked pseudogenes.	cytochrome p450 79c2;(source:Araport11)
AT1G47570.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G47700.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G47560.1	protein_coding	exocyst complex component sec3B	Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.	exocyst complex component sec3B;(source:Araport11)
AT1G47680.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G47600.1	protein_coding	beta glucosidase 34	Encodes a myrosinase. Over-expression led to a glucosinolate profile change.	beta glucosidase 34;(source:Araport11)
AT1G47660.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G47470.1	protein_coding	Protein of unknown function (DUF784)		ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT1G47520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.3e-256 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G47590.1	pseudogene		Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.Previously annotated as pseudogene, evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of purine permease 19;(source:Araport11)
AT1G47530.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G47580.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G47670.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G47510.1	protein_coding	inositol polyphosphate 5-phosphatase 11	Encodes a phosphatidylinositol  polyphosphate 5-phosphatase. It can dephosphorylate PI(4,5)P2, PI(3,5)P2, and PI(3,4,5)P3, but, it is not active against PI(5)P or the water soluble inositol(1,4,5)P3 or inositol(1,3,4,5)P4. The transcript levels for this gene rise in response to auxin, ABA, and JA.	inositol polyphosphate 5-phosphatase 11;(source:Araport11)
AT1G47640.1	protein_coding			seven transmembrane domain protein;(source:Araport11)
AT1G47500.1	protein_coding	RNA-binding protein 47C'		RNA-binding protein 47C;(source:Araport11)
AT1G47490.1	protein_coding	RNA-binding protein 47C		RNA-binding protein 47C;(source:Araport11)
AT1G47620.1	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 8	member of CYP96A	cytochrome P450, family 96, subfamily A, polypeptide 8;(source:Araport11)
AT1G47480.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G47550.1	protein_coding	exocyst complex component sec3A	Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.  It binds phosphoinositide lipids.	exocyst complex component sec3A;(source:Araport11)
AT1G47610.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G47540.1	protein_coding	Scorpion toxin-like knottin superfamily protein		Scorpion toxin-like knottin superfamily protein;(source:Araport11)
AT1G47650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G47630.1	pseudogene		member of CYP96A	pseudogene of cytochrome P450;(source:Araport11)
AT1G63000.1	protein_coding	nucleotide-rhamnose synthase/epimerase-reductase		nucleotide-rhamnose synthase/epimerase-reductase;(source:Araport11)
AT1G62930.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	RPF3 encodes a pentatricopeptide repeat (PPR) protein involved in 5' processing of  different mitochondrial mRNAs.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G62940.1	protein_coding	acyl-CoA synthetase 5	encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.	acyl-CoA synthetase 5;(source:Araport11)
AT1G62950.1	protein_coding	leucine-rich repeat transmembrane protein kinase family protein		leucine-rich repeat transmembrane protein kinase family protein;(source:Araport11)
AT1G62960.1	protein_coding	ACC synthase 10	Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity.	ACC synthase 10;(source:Araport11)
AT1G62880.1	protein_coding	Cornichon family protein		Cornichon family protein;(source:Araport11)
AT1G62900.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G62860.1	pseudogene		pseudogene of pentatricopeptide (PPR) repeat-containing protein	pseudogene of Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G62970.1	protein_coding	Chaperone DnaJ-domain superfamily protein	SDJ3 functions partially redundantly with SDJ1 and SDJ2 and interacts with SUVH1 and SUVH3 to form a SUVH-SDJ complex. The complex binds promoters with DNA methylation and mediates transcriptional activation of promoter methylated genes.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G62870.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G62980.1	protein_coding	expansin A18	Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A18;(source:Araport11)
AT1G62890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17200.1);(source:TAIR10)
AT1G62910.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G62990.1	protein_coding	KNOTTED-like homeobox of Arabidopsis thaliana 7	Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis.  Mutants have moderately irregular xylem development.  Expression of this gene is upregulated by SND1 and MYB46.	homeobox knotted-like protein;(source:Araport11)
AT1G62920.1	protein_coding			proteasome maturation factor;(source:Araport11)
AT1G16800.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G16790.1	protein_coding	ribosomal protein-related		ribosomal protein-like protein;(source:Araport11)
AT1G16780.1	protein_coding	Inorganic H pyrophosphatase family protein	Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.	Inorganic H pyrophosphatase family protein;(source:Araport11)
AT1G16700.1	protein_coding	Alpha-helical ferredoxin		Alpha-helical ferredoxin;(source:Araport11)
AT1G16770.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G31050.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G30990.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G30880.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G31000.1	protein_coding	F-box and associated interaction domains-containing protein		F-box/associated interaction domain protein;(source:Araport11)
AT1G30890.1	protein_coding	Integral membrane HRF1 family protein		Integral membrane HRF1 family protein;(source:Araport11)
AT1G31010.1	protein_coding	organellar single-stranded DNA binding protein 4		organellar single-stranded DNA binding protein 4;(source:Araport11)
AT1G30900.1	protein_coding	VACUOLAR SORTING RECEPTOR 6		VACUOLAR SORTING RECEPTOR 6;(source:Araport11)
AT1G30930.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G31020.1	protein_coding	thioredoxin O2		thioredoxin O2;(source:Araport11)
AT1G30940.1	pseudogene			pseudogene of F-box family protein;(source:Araport11)
AT1G30910.1	protein_coding	Molybdenum cofactor sulfurase family protein		Molybdenum cofactor sulfurase family protein;(source:Araport11)
AT1G31030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.0e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G30920.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G31040.1	protein_coding	PLATZ transcription factor family protein	ORE15 is a nuclear localized  member of the PLATZ family of transcription factors. Based on over expression and loss of function phenotypes, ORE15 functions in regulation of leaf cell proliferation and senescence.	PLATZ transcription factor family protein;(source:Araport11)
AT1G30950.1	protein_coding	F-box family protein	Required for the proper identity of the floral meristem. Involved in establishing the whorled pattern of floral organs, in the control of specification of the floral meristem, and in the activation of APETALA3 and PISTILLATA. UFO is found at the AP3 promoter in a LFY-dependent manner, suggesting that it works with LFY to regulate AP3 expression. UFO may also promote the ubiquitylation of LFY.	F-box family protein;(source:Araport11)
AT1G30960.1	protein_coding	GTP-binding family protein	Ortholog of ERA (E. coli RAS-like protein)-related GTPase (ERG). Mitochondrial protein that associates with 18sRNA. Heterozygous mutants segregate for embryo lethality inherited as a sporphytic maternal effect. Increased ROS in the mutant ovule suggests a heritable mitochondrial defect results in lethality.	GTP-binding family protein;(source:Araport11)
AT1G30970.1	protein_coding	zinc finger (C2H2 type) family protein	Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis.  suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants.  suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor.  SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus.	zinc finger (C2H2 type) family protein;(source:Araport11)
AT1G31070.1	protein_coding	N-acetylglucosamine-1-phosphate uridylyltransferase 1	Encodes a protein that functions as an N-acetylglucosamine-1-phosphate uridylyltransferase that catalyzes the formation of UDP-N-acetylglucosamine (UDP-GlcNAc). This is an essential precursor for glycolipid and glycoprotein synthesis and is also used for regulatory protein modification in signaling pathways. The enzyme can also catalyze the reverse reaction using both UDP-GlcNAc and the less common UDP-N-acetylgalactosamine as substrates.	N-acetylglucosamine-1-phosphate uridylyltransferase 1;(source:Araport11)
AT1G50680.1	protein_coding	AP2/B3 transcription factor family protein		AP2/B3 transcription factor family protein;(source:Araport11)
AT1G50690.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT1G50700.1	protein_coding	calcium-dependent protein kinase 33	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 33;(source:Araport11)
AT1G50710.1	protein_coding			HAUS augmin-like complex subunit;(source:Araport11)
AT1G27270.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G27390.1	protein_coding	translocase outer membrane 20-2	Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins	translocase outer membrane 20-2;(source:Araport11)
AT1G27470.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT1G27310.1	protein_coding	nuclear transport factor 2A	Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport.	nuclear transport factor 2A;(source:Araport11)
AT1G27280.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G27480.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G27400.1	protein_coding	Ribosomal protein L22p/L17e family protein		Ribosomal protein L22p/L17e family protein;(source:Araport11)
AT1G27490.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G27410.1	protein_coding	DNA repair metallo-beta-lactamase family protein		DNA repair metallo-beta-lactamase family protein;(source:Araport11)
AT1G27290.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G27300.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G27500.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G27320.1	protein_coding	histidine kinase 3	Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. The mRNA is cell-to-cell mobile.	histidine kinase 3;(source:Araport11)
AT1G27330.1	protein_coding	Ribosome associated membrane protein RAMP4		Ribosome associated membrane protein RAMP4;(source:Araport11)
AT1G27340.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	Encodes a putative F-box protein that is involved in the regulation of leaf morphology.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G27420.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G27350.1	protein_coding	Ribosome associated membrane protein RAMP4		Ribosome associated membrane protein RAMP4;(source:Araport11)
AT1G27430.1	protein_coding	GYF domain-containing protein		GYF domain-containing protein;(source:Araport11)
AT1G27260.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G27360.1	protein_coding	squamosa promoter-like 11	In conjunction with SPL10 and SPL2, SPL11 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.	squamosa promoter-like 11;(source:Araport11)
AT1G27440.1	protein_coding	Exostosin family protein	IRX10 was identified as MUCI69 in a reverse genetic screen for MUCILAGE-RELATED genes. Mutations in this gene did not disrupt mucilage properties, likely due to the presence of the functionally redundant IRX10-L.	Exostosin family protein;(source:Araport11)
AT1G27380.1	protein_coding	ROP-interactive CRIB motif-containing protein 2	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.	ROP-interactive CRIB motif-containing protein 2;(source:Araport11)
AT1G27370.1	protein_coding	squamosa promoter binding protein-like 10	In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.  SPL10 also controls lamina shape during vegetative development.	squamosa promoter binding protein-like 10;(source:Araport11)
AT1G27450.1	protein_coding	adenine phosphoribosyl transferase 1	Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP.	adenine phosphoribosyl transferase 1;(source:Araport11)
AT1G27460.1	protein_coding	no pollen germination related 1	encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits. The mRNA is cell-to-cell mobile.	no pollen germination related 1;(source:Araport11)
AT1G71970.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G71980.1	protein_coding	Protease-associated (PA) RING/U-box zinc finger family protein	RMR2 is a secretory pathway protein localized to the trans-golgi network. It belongs to a family of vacuolar sorting receptors. If forms heterodimers with RMR1.	Protease-associated (PA) RING/U-box zinc finger family protein;(source:Araport11)
AT1G71930.1	protein_coding	vascular related NAC-domain protein 7	Encodes a NAC-domain transcription factor with transcriptional activation activity that is involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.	vascular related NAC-domain protein 7;(source:Araport11)
AT1G71990.1	protein_coding	fucosyltransferase 13	This gene encodes a Lewis-type alpha 1,4-fucosyltransferase	fucosyltransferase 13;(source:Araport11)
AT1G71940.1	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT1G71880.1	protein_coding	sucrose-proton symporter 1	Sucrose transporter gene induced in response to nematodes; member of Sucrose-proton symporter family. The mRNA is cell-to-cell mobile.	sucrose-proton symporter 1;(source:Araport11)
AT1G71890.1	protein_coding	Major facilitator superfamily protein	Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.	Major facilitator superfamily protein;(source:Araport11)
AT1G71950.1	protein_coding	Proteinase inhibitor, propeptide	SPI-1 is a member of the I9 inhibitor family. It is an inhibitor of SBT4.13 subtilase.	Proteinase inhibitor, propeptide;(source:Araport11)
AT1G71900.1	protein_coding	Protein of unknown function (DUF803)		magnesium transporter, putative (DUF803);(source:Araport11)
AT1G71960.1	protein_coding	ATP-binding casette family G25	Encodes a plasma membrane localized ABC transporter involved in abscisic acid transport and responses.	ATP-binding casette family G25;(source:Araport11)
AT1G71910.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G71920.1	protein_coding	HISTIDINE BIOSYNTHESIS 6B	Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.	HISTIDINE BIOSYNTHESIS 6B;(source:Araport11)
AT1G70410.1	protein_coding	beta carbonic anhydrase 4	Encodes a putative beta-carbonic anhydrase betaCA4.  Together with betaCA1 (At3g01500) regulates CO2-controlled stomatal movements in guard cells.	beta carbonic anhydrase 4;(source:Araport11)
AT1G70270.1	protein_coding			transcription factor;(source:Araport11)
AT1G70330.1	protein_coding	equilibrative nucleotide transporter 1	encodes an adenosine transporter that catalyze a proton-dependent adenosine transport. The mRNA is cell-to-cell mobile.	equilibrative nucleotide transporter 1;(source:Araport11)
AT1G70420.1	protein_coding	Protein of unknown function (DUF1645)		DNA ligase-like protein, putative (DUF1645);(source:Araport11)
AT1G70310.1	protein_coding	spermidine synthase 2	Spermidine synthase.	spermidine synthase 2;(source:Araport11)
AT1G70400.1	protein_coding			NOSIC domain protein;(source:Araport11)
AT1G70300.1	protein_coding	K+ uptake permease 6	potassium transporter	K+ uptake permease 6;(source:Araport11)
AT1G70390.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G70380.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G70440.1	protein_coding	similar to RCD one 3	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.	similar to RCD one 3;(source:Araport11)
AT1G70430.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G70360.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G70320.1	protein_coding	ubiquitin-protein ligase 2	encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.	ubiquitin-protein ligase 2;(source:Araport11)
AT1G70290.1	protein_coding	trehalose-6-phosphatase synthase S8	Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.	trehalose-6-phosphatase synthase S8;(source:Araport11)
AT1G70350.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G70280.1	protein_coding	NHL domain-containing protein		NHL domain-containing protein;(source:Araport11)
AT1G70370.1	protein_coding	polygalacturonase 2		polygalacturonase 2;(source:Araport11)
AT1G70340.1	protein_coding	Plant protein of unknown function (DUF936)	Member of a novel, plant specific family of microtubule associated proteins.	dicer-like protein (DUF936);(source:Araport11)
AT1G80220.1	protein_coding	Protein of unknown function (DUF1644)		hypothetical protein (DUF1644);(source:Araport11)
AT1G80130.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G80030.1	protein_coding	Molecular chaperone Hsp40/DnaJ family protein		Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT1G80140.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G80060.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT1G80150.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G80160.1	protein_coding	Lactoylglutathione lyase / glyoxalase I family protein	Vicinal oxygen chelate (VOC) superfamily member.	Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT1G80180.1	protein_coding		Encodes a substrate of the MAPK kinases. Phenotypic analyses of Arabidopsis expressing phosphorylation site mutant forms of At1g80180.1 showed clustered stomata and higher stomatal index in cotyledons expressing the phosphomimetic form of At1g80180.1.	hypothetical protein;(source:Araport11)
AT1G80190.1	protein_coding	partner of SLD five 1	Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.	partner of SLD five 1;(source:Araport11)
AT1G80210.1	protein_coding	Mov34/MPN/PAD-1 family protein		Mov34/MPN/PAD-1 family protein;(source:Araport11)
AT1G80230.1	protein_coding	Rubredoxin-like superfamily protein		Rubredoxin-like superfamily protein;(source:Araport11)
AT1G80070.1	protein_coding	Pre-mRNA-processing-splicing factor	Encodes a factor that influences pre-mRNA splicing and is required for embryonic development. Mutations result in an abnormal suspensor and embryo lethality. The mRNA is cell-to-cell mobile.	Pre-mRNA-processing-splicing factor;(source:Araport11)
AT1G80090.1	protein_coding	Cystathionine beta-synthase (CBS) family protein		Cystathionine beta-synthase (CBS) family protein;(source:Araport11)
AT1G80120.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT1G80040.1	protein_coding			ubiquitin system component Cue;(source:Araport11)
AT1G80050.1	protein_coding	adenine phosphoribosyl transferase 2	Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol.	adenine phosphoribosyl transferase 2;(source:Araport11)
AT1G80170.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G80080.1	protein_coding	Leucine-rich repeat (LRR) family protein	Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development. Its transcript levels change after inducing MUTE expression in a mute background.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G80240.1	protein_coding	Protein of unknown function, DUF642	DUF642 gene	choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT1G80200.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G80100.1	protein_coding	histidine phosphotransfer protein 6	AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for  phosphotransfer, present in the other  AHPs. AHP6 does not appear to  have phosphotransfer activity. Acts  as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated  pericycle cell files. Negative regulator  of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of  the first exon. In ahp6-2 seedlings,  only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	histidine phosphotransfer protein 6;(source:Araport11)
AT1G80110.1	protein_coding	phloem protein 2-B11		phloem protein 2-B11;(source:Araport11)
AT1G19380.1	protein_coding	Protein of unknown function (DUF1195)		sugar, putative (DUF1195);(source:Araport11)
AT1G19390.1	protein_coding	Wall-associated kinase family protein		Wall-associated kinase family protein;(source:Araport11)
AT1G19400.1	protein_coding	Erythronate-4-phosphate dehydrogenase family protein	Tail-anchored (TA) OEP membrane protein which possesses a single C-terminal transmembrane domain targeting post-translationally to plastids.	Erythronate-4-phosphate dehydrogenase family protein;(source:Araport11)
AT1G19410.1	protein_coding	FBD / Leucine Rich Repeat domains containing protein		FBD / Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G19430.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G19440.1	protein_coding	3-ketoacyl-CoA synthase 4	Encodes KCS4, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 4;(source:Araport11)
AT1G19520.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein	Ribosomal pentatricopeptide repeat protein	pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G19450.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G19460.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G19510.1	protein_coding	RAD-like 5		RAD-like 5;(source:Araport11)
AT1G19490.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT1G19300.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT1G19310.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G19320.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT1G19470.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G19330.1	protein_coding		Evening-expressed key component of Sin3-HDAC complex, which bind directly to the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) and PSEUDO-RESPONSE REGULATOR 9 (PRR9) promoters and catalyze histone 3 (H3) deacetylation at the cognate regions to repress expression, allowing the declining phase of their expression at dusk.	histone deacetylase complex subunit;(source:Araport11)
AT1G19480.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT1G19340.1	protein_coding	Methyltransferase MT-A70 family protein		Methyltransferase MT-A70 family protein;(source:Araport11)
AT1G19500.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G19350.1	protein_coding	Brassinosteroid signalling positive regulator (BZR1) family protein	Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes. Works with BRAVO to regulate QC division in the root.	Brassinosteroid signaling positive regulator (BZR1) family protein;(source:Araport11)
AT1G19530.1	protein_coding			DNA polymerase epsilon catalytic subunit A;(source:Araport11)
AT1G19540.1	protein_coding	NmrA-like negative transcriptional regulator family protein		NmrA-like negative transcriptional regulator family protein;(source:Araport11)
AT1G19360.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein	Encodes an arabinosyltransferase that modifies extensin proteins in root hair cells.	Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G19550.1	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT1G19370.1	protein_coding			membrane protein;(source:Araport11)
AT1G58380.1	protein_coding	Ribosomal protein S5 family protein		Ribosomal protein S5 family protein;(source:Araport11)
AT1G58270.1	protein_coding	TRAF-like family protein	ZW9 mRNA, complete cds The mRNA is cell-to-cell mobile.	TRAF-like family protein;(source:Araport11)
AT1G58360.1	protein_coding	amino acid permease 1	Encodes AAP1 (amino acid permease 1), a neutral amino acid transporter expressed in seeds.  Functions in amino acid uptake into embryos. The transporter also functions in acquisition of glutamate and neutral amino acids by the root.	amino acid permease 1;(source:Araport11)
AT1G58290.1	protein_coding	Glutamyl-tRNA reductase family protein	Encodes a protein with glutamyl-tRNA reductase (GluTR) activity, catalyzing the NADPH-dependent reduction of Glu-tRNA(Glu) to glutamate 1-semialdehyde (GSA) with the release of free tRNA(Glu). It is involved in the early steps of chlorophyll biosynthesis.	Glutamyl-tRNA reductase family protein;(source:Araport11)
AT1G58350.1	protein_coding	Putative serine esterase  family protein		Putative serine esterase family protein;(source:Araport11)
AT1G58340.1	protein_coding	MATE efflux family protein	Encodes a plant MATE (multidrug and toxic compound extrusion) transporter that is localized to the Golgi complex and small organelles and is involved in determining the rate of organ initiation.  It is also involved in iron homeostasis when plants are under osmotic stress.	MATE efflux family protein;(source:Araport11)
AT1G58330.1	protein_coding	transcription factor-related		transcription factor-like protein;(source:Araport11)
AT1G58320.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT1G58310.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G58300.1	protein_coding	heme oxygenase 4	Encodes a member (HO4) of the heme oxygenase family.	heme oxygenase 4;(source:Araport11)
AT1G58280.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT1G42250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05087.1);(source:TAIR10)
AT1G42080.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G42150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 5.3e-161 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT1G42220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.7e-14 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G42110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 3.5e-136 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G42200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.3e-27 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G42140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.0e-66 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G42190.1	protein_coding	GAG/POL/ENV polyprotein		GAG/POL/ENV polyprotein;(source:Araport11)
AT1G51830.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G51730.1	protein_coding	Ubiquitin-conjugating enzyme family protein		Ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT1G51720.1	protein_coding	Amino acid dehydrogenase family protein		Amino acid dehydrogenase family protein;(source:Araport11)
AT1G51620.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G51710.1	protein_coding	ubiquitin-specific protease 6	Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin.	ubiquitin-specific protease 6;(source:Araport11)
AT1G51800.1	protein_coding	Leucine-rich repeat protein kinase family protein	The gene encodes a putative member of  the LRR-RLK protein family. Expressin and mutant analysis revealed that it contributes to the interaction between Arabidopsis and Hyaloperonospora arabidopsidis.  and The mRNA is cell-to-cell mobile.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G51700.1	protein_coding	DOF zinc finger protein 1	Encodes dof zinc finger protein (adof1). The mRNA is cell-to-cell mobile.	DOF zinc finger protein 1;(source:Araport11)
AT1G51790.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G51780.1	protein_coding	IAA-leucine resistant (ILR)-like gene 5	encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and is very similar to IAR3.	IAA-amino acid hydrolase ILR1-like 5;(source:Araport11)
AT1G51690.1	protein_coding	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	55 kDa B regulatory subunit of phosphatase 2A  mRNA,	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;(source:Araport11)
AT1G51770.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G51680.1	protein_coding	4-coumarate:CoA ligase 1	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate.  The catalytic efficiency was in the following (descending) order:  p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.	4-coumarate:CoA ligase 1;(source:Araport11)
AT1G51760.1	protein_coding	peptidase M20/M25/M40 family protein	encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers. The mRNA is cell-to-cell mobile.	peptidase M20/M25/M40 family protein;(source:Araport11)
AT1G51670.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G51750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.6e-20 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G51740.1	protein_coding	syntaxin of plants 81	member of SYP8 Gene Family	syntaxin of plants 81;(source:Araport11)
AT1G51560.1	protein_coding	Pyridoxamine 5'-phosphate oxidase family protein		Pyridoxamine 5-phosphate oxidase family protein;(source:Araport11)
AT1G51640.1	protein_coding	exocyst subunit exo70 family protein G2	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein G2;(source:Araport11)
AT1G51630.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G51650.1	protein_coding	ATP synthase epsilon chain, mitochondrial		ATP synthase epsilon chain;(source:Araport11)
AT1G51660.1	protein_coding	mitogen-activated protein kinase kinase 4	Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK4 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission. The mRNA is cell-to-cell mobile.	mitogen-activated protein kinase kinase 4;(source:Araport11)
AT1G22900.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT1G22890.1	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT1G23010.1	protein_coding	Cupredoxin superfamily protein	Encodes a protein with multicopper oxidase activity.  Located in ER.  Function together with LPR2 (AT1G71040) and a P5-type ATPase (At5g23630/PDR2) in a common pathway that adjusts root meristem activity to Pi (inorganic phosphate) availability.	Cupredoxin superfamily protein;(source:Araport11)
AT1G22880.1	protein_coding	cellulase 5		cellulase 5;(source:Araport11)
AT1G23000.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G22860.1	protein_coding	Vacuolar sorting protein 39		Vacuolar sorting protein 39;(source:Araport11)
AT1G23030.1	protein_coding	ARM repeat superfamily protein	Encodes a plant U-Box protein that is capable of binding and ubiquitinating MYC2 in vitro, acting as an E3 ligase. Unlike PUB10, its closest homolog in Arabidopsis, it does not appear to play a major role in the MeJA-mediated response.	ARM repeat superfamily protein;(source:Araport11)
AT1G22980.1	protein_coding			Grap2/cyclin-D-interacting protein;(source:Araport11)
AT1G22840.1	protein_coding	CYTOCHROME C-1	Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a  TCP-domain transcription factor, and a downstream  internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers. Double mutants with CYTC-2 accumulate starch during the day, have delayed growth and development and reduced GA and DELLA proteins linking cellular metabolism and GA homeostasis.	CYTOCHROME C-1;(source:Araport11)
AT1G22940.1	protein_coding	thiamin biosynthesis protein, putative	Encodes a bifunctional enzyme required for thiamine (vitamin B1) biosynthesis. TH1 can phosphorylate HMP-P to produce HMP-PP, the pyrimidine heterocyclic subunit of thiamine. TH1 also catalyzes the condensation of HMP-PP and HET to form thiamine monophosphate (TMP). TH1 also appears capable of phosphorylating HMP based on E.coli mutant complementation assays. th1 mutants are thiamine auxotrophs that die as seedlings on unsupplemented media.	thiamin biosynthesis protein;(source:Araport11)
AT1G22970.1	protein_coding			cyclin-D1-binding protein;(source:Araport11)
AT1G22930.1	protein_coding	T-complex protein 11		T-complex protein 11;(source:Araport11)
AT1G22960.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G22990.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G22920.1	protein_coding	COP9 signalosome 5A	AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype.	COP9 signalosome 5A;(source:Araport11)
AT1G22850.1	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT1G22950.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620), participates in epigenetic repression of flowering genes, works redundantly with CP2 to repress several members of the MADS-box transcription factors family, during vegetative development via histone modification.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G22910.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G22870.1	protein_coding	Protein kinase family protein with ARM repeat domain	One of two paralogs in Arabidopsis.Loss of both SCYL2B and SCYL2A results in severe growth defects.	kinase family with ARM repeat domain-containing protein;(source:Araport11)
AT1G23020.1	protein_coding	ferric reduction oxidase 3	Encodes a ferric chelate reductase whose transcription is regulated by FIT1.  Expressed in the root, shoot, flower and cotyledon.	ferric reduction oxidase 3;(source:Araport11)
AT1G79880.1	protein_coding	RNA recognition motif (RRM)-containing protein		RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT1G79870.1	protein_coding	D-isomer specific 2-hydroxyacid dehydrogenase family protein	Hydroxyphenylpyruvate reductase (HPPR), which catalyzes the reduction of 4-hydroxyphenylpyruvic acid (pHPP) to 4-hydroxyphenyllactic acid (pHPL). Together with HPPR3 and TAT1 involved in the biosynthesis of pHPL from tyrosine.	D-isomer specific 2-hydroxyacid dehydrogenase family protein;(source:Araport11)
AT1G79700.1	protein_coding	Integrase-type DNA-binding superfamily protein	WRI4 encodes an AP2/ERF-type transcriptional activator that specifically controls cuticular wax biosynthesis in Arabidopsis stems. It also functions to activate transcription of genes involved fatty acid biosynthesis during seed and flower development as well as stem wax biosynthesis. Targets identified by ChIP-seq include: LACS1, KCR1, PAS2, ECR, and WSD1.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G79860.1	protein_coding	RHO guanyl-nucleotide exchange factor 12	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth  Growth.	RHO guanyl-nucleotide exchange factor 12;(source:Araport11)
AT1G79850.1	protein_coding	ribosomal protein S17	nuclear-encoded 30S chloroplast ribosomal protein S17	ribosomal protein S17;(source:Araport11)
AT1G79920.1	protein_coding	Heat shock protein 70 (Hsp 70) family protein		Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT1G79910.1	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT1G79840.1	protein_coding	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain	Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development.  Directly regulated by WER.	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein;(source:Araport11)
AT1G79900.1	protein_coding	Mitochondrial substrate carrier family protein	encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol	Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G79830.1	protein_coding	golgin candidate 5	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast.  A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).	golgin Putative 5;(source:Araport11)
AT1G79890.1	protein_coding	RAD3-like DNA-binding helicase protein		RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G16670.1	protein_coding	Protein kinase superfamily protein	Encodes a cold-activated plasma membrane protein cold-responsive protein kinase that phosphorylates 14-3-3 proteins. The phosphorylated 14-3-3 proteins shuttle from the cytosol to the nucleus, where they interact with and destabilize the key cold-responsive C-repeat-binding factor (CBF) proteins, modulate CBF stability and the response to cold stress.	Protein kinase superfamily protein;(source:Araport11)
AT1G16650.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G16630.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G16540.1	protein_coding	molybdenum cofactor sulfurase (LOS5) (ABA3)	Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA, the last step of abscisic acid (ABA) biosynthesis. <i>sir</i> loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer.  Also involved in protein import into chloroplasts.	molybdenum cofactor sulfurase (LOS5) (ABA3);(source:Araport11)
AT1G16610.1	protein_coding	arginine/serine-rich 45	Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.  Also involved in plant sugar response.  sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.	arginine/serine-rich 45;(source:Araport11)
AT1G16640.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT1G16590.1	protein_coding	DNA-binding HORMA family protein	putative translesion synthesis polymerase zeta subunit, homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).	DNA-binding HORMA family protein;(source:Araport11)
AT1G16570.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a encodes a putative UDP-glycosyltransferase superfamily protein belonging to the glycosyltransferase (GT) family 33 that is localized to the endoplasmic reticulum. Loss of function alleles are male sterile, with pollen tubes bursting after germination. Loss of function also causes increased callose deposition in the female gametophyte, pollen tube overgrowth and reduced transmission.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G16560.1	protein_coding	Per1-like family protein		Per1-like family protein;(source:Araport11)
AT1G16680.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G16690.1	protein_coding	Enhancer of polycomb-like transcription factor protein		Enhancer of polycomb-like transcription factor protein;(source:Araport11)
AT1G62160.1	protein_coding	Serine protease inhibitor (SERPIN) family protein		Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT1G62170.1	protein_coding	Serine protease inhibitor (SERPIN) family protein		Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT1G62240.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G62090.1	pseudogene			pseudogene of Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G62270.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G62190.1	protein_coding	Kua-ubiquitin conjugating enzyme hybrid localisation domain		Kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein;(source:Araport11)
AT1G62280.1	protein_coding	SLAC1 homologue 1	Encodes a protein with ten predicted transmembrane helices. The SLAH1 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement a slac1-2 mutant suggesting that it performs a similar function. SLAH1:GFP localizes to the plasma membrane.	SLAC1 homologue 1;(source:Araport11)
AT1G62200.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G62290.1	protein_coding	Saposin-like aspartyl protease family protein		Saposin-like aspartyl protease family protein;(source:Araport11)
AT1G62110.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G62210.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G62300.1	protein_coding	WRKY family transcription factor	Encodes a transcription factor WRKY6.  Regulates Phosphate1 (Pho1) expression in response to low phosphate (Pi) stress.	WRKY family transcription factor;(source:Araport11)
AT1G62120.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G62150.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G62220.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G62080.1	protein_coding		Encodes a member of a mucilage protein family. Predicted in silico to be glycosylated.	transmembrane protein;(source:Araport11)
AT1G62060.1	protein_coding		Encodes a member of a mucilage protein family. Predicted in silico to be glycosylated.	transmembrane protein;(source:Araport11)
AT1G62250.1	protein_coding			orotidine 5-phosphate decarboxylase;(source:Araport11)
AT1G62260.1	protein_coding	mitochondrial editing factor 9	Encodes MITOCHONDRIAL EDITING FACTOR 9 (MEF9), an E subclass PPR protein required for RNA editing.	mitochondrial editing factor 9;(source:Araport11)
AT1G62180.1	protein_coding	5'adenylylphosphosulfate reductase 2	encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.	5adenylylphosphosulfate reductase 2;(source:Araport11)
AT1G62130.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT1G62070.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G52280.1	protein_coding	RAB GTPase homolog G3D		RAB GTPase homolog G3D;(source:Araport11)
AT1G52270.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G52260.1	protein_coding	PDI-like 1-5	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).	PDI-like 1-5;(source:Araport11)
AT1G52430.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT1G52340.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes a cytosolic short-chain dehydrogenase/reductase involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis.  Mutants are insensitive to sucrose and glucose.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G52330.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT1G52410.1	protein_coding	TSK-associating protein 1	Contains a novel calcium-binding repeat sequence.  Binds TSK in vitro.  Localizes to small cytoplasmic vesicles in interphase cells.  In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis.  May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex.  Can form multimers. The mRNA is cell-to-cell mobile.	TSK-associating protein 1;(source:Araport11)
AT1G52240.1	protein_coding	RHO guanyl-nucleotide exchange factor 11	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily .	rop guanine nucleotide exchange factor-like protein;(source:Araport11)
AT1G52320.1	protein_coding			kinesin-like protein;(source:Araport11)
AT1G52400.1	protein_coding	beta glucosidase 18	encodes a member of glycosyl hydrolase family 1, located in inducible ER bodies which were formed after wounding, required in inducible ER body formation The mRNA is cell-to-cell mobile.	beta glucosidase 18;(source:Araport11)
AT1G52300.1	protein_coding	Zinc-binding ribosomal protein family protein		Zinc-binding ribosomal protein family protein;(source:Araport11)
AT1G52310.1	protein_coding	protein kinase family protein / C-type lectin domain-containing protein		protein kinase family protein / C-type lectin domain-containing protein;(source:Araport11)
AT1G52390.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G52360.1	protein_coding	Coatomer, beta' subunit		Coatomer, beta subunit;(source:Araport11)
AT1G52380.1	protein_coding	NUP50 (Nucleoporin 50 kDa) protein		NUP50 (Nucleoporin 50 kDa) protein;(source:Araport11)
AT1G52290.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT1G52370.1	protein_coding	Ribosomal protein L22p/L17e family protein		Ribosomal protein L22p/L17e family protein;(source:Araport11)
AT1G04420.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G04410.1	protein_coding	Lactate/malate dehydrogenase family protein	predicted to encode a cytosolic malate dehydrogenase.	Lactate/malate dehydrogenase family protein;(source:Araport11)
AT1G04330.1	protein_coding		A proline/serine rich protein of unknown function. It interacts with defense related MAP kinase MPK6 and others. May be involved in signaling during defense or stress response.	hypothetical protein;(source:Araport11)
AT1G04400.1	protein_coding	cryptochrome 2	Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function.  It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.The life-time of cry2 signaling state in situ (in planta) is about 16 min.	cryptochrome 2;(source:Araport11)
AT1G04310.1	protein_coding	ethylene response sensor 2	encodes an ethylene receptor related to bacterial two-component histidine kinases.	ethylene response sensor 2;(source:Araport11)
AT1G04390.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT1G04440.1	protein_coding	casein kinase like 13	Member of CKL gene family (CKL-C group).	casein kinase like 13;(source:Araport11)
AT1G04380.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G04300.1	protein_coding	TRAF-like superfamily protein	Encodes MUSE13, a TRAF domain protein. Regulates the turnover of nucleotide-binding domain and leucine-rich repeat-containing (NLR) immune receptors SNC1 and RPS2. Loss of both MUSE13 and MUSE14 leads to enhanced pathogen resistance, NLR accumulation, and autoimmunity.In addition, MUSE13/14 physically interact with ATG6 and appear to regulate ATG6 ubiquitination and thus formation of autophagosomes.	TRAF-like superfamily protein;(source:Araport11)
AT1G04370.1	protein_coding	Ethylene-responsive element binding factor 14	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	Ethylene-responsive element binding factor 14;(source:Araport11)
AT1G04290.1	protein_coding	Thioesterase superfamily protein		Thioesterase superfamily protein;(source:Araport11)
AT1G04490.1	protein_coding	Protein of unknown function (DUF3527)		hypothetical protein (DUF3527);(source:Araport11)
AT1G04280.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G04480.1	protein_coding	Ribosomal protein L14p/L23e family protein		Ribosomal protein L14p/L23e family protein;(source:Araport11)
AT1G04520.1	protein_coding	plasmodesmata-located protein 2	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata.	plasmodesmata-located protein 2;(source:Araport11)
AT1G04510.1	protein_coding	MOS4-associated  complex 3A	Encodes MAC3A, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19.  Associated with the MOS4-Associated Complex (MAC).  Involved in plant innate immunity.	MOS4-associated complex 3A;(source:Araport11)
AT1G04270.1	protein_coding	cytosolic ribosomal protein S15	Encodes cytosolic ribosomal protein S15.	cytosolic ribosomal protein S15;(source:Araport11)
AT1G04430.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G04360.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G04470.1	protein_coding	Protein of unknown function (DUF810)		hypothetical protein (DUF810);(source:Araport11)
AT1G04500.1	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT1G04350.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G04260.1	protein_coding	CAMV movement protein interacting protein 7	Encodes protein that interacts with CaMV movement protein.  Colocalizes in the cytoplasm with the movement protein.  Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors.	CAMV movement protein interacting protein 7;(source:Araport11)
AT1G04340.1	protein_coding	HR-like lesion-inducing protein-related		HR-like lesion-inducing protein-like protein;(source:Araport11)
AT1G04450.1	protein_coding	ROP-interactive CRIB motif-containing protein 3	Encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. The protein most similar to RIC1 (family subgroup III). Gene is expressed predominantly in inflorescence and flower tissue. Interacts with ROP1 to modulate calcium ion influxes required to generate tip-focused calcium gradients.It	ROP-interactive CRIB motif-containing protein 3;(source:Araport11)
AT1G04250.1	protein_coding	AUX/IAA transcriptional regulator family protein	Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling and is a positive modulator of natural leaf senescence. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.	AUX/IAA transcriptional regulator family protein;(source:Araport11)
AT1G04240.1	protein_coding	AUX/IAA transcriptional regulator family protein	SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.	AUX/IAA transcriptional regulator family protein;(source:Araport11)
AT1G75420.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G75410.1	protein_coding	BEL1-like homeodomain 3	BEL1-like homeodomain 3 (BLH3)	BEL1-like homeodomain 3;(source:Araport11)
AT1G75400.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G75390.1	protein_coding	basic leucine-zipper 44		basic leucine-zipper 44;(source:Araport11)
AT1G75370.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G75380.1	protein_coding	bifunctional nuclease in basal defense response 1	Encodes a nuclease involved in ABA-mediated callose deposition.  It has been shown to interact with JAZ proteins, binds to a jasmonic acid-responsive element (JARE) and repress AtJMT expression.	bifunctional nuclease in basal defense response 1;(source:Araport11)
AT1G75460.1	protein_coding	ATP-dependent protease La (LON) domain protein		ATP-dependent protease La (LON) domain protein;(source:Araport11)
AT1G75360.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G75450.1	protein_coding	cytokinin oxidase 5	This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase 5;(source:Araport11)
AT1G75350.1	protein_coding	Ribosomal protein L31		Ribosomal protein L31;(source:Araport11)
AT1G75440.1	protein_coding	ubiquitin-conjugating enzyme 16		ubiquitin-conjugating enzyme 16;(source:Araport11)
AT1G75340.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G75430.1	protein_coding	BEL1-like homeodomain 11		BEL1-like homeodomain 11;(source:Araport11)
AT1G75330.1	protein_coding	ornithine carbamoyltransferase		ornithine carbamoyltransferase;(source:Araport11)
AT1G65720.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G65730.1	protein_coding	YELLOW STRIPE like 7	Arabidopsis thaliana metal-nicotianamine transporter YSL4	YELLOW STRIPE like 7;(source:Araport11)
AT1G65740.1	protein_coding	Protein of unknown function (DUF295)		ascorbic acid mannose pathway regulator (DUF295);(source:Araport11)
AT1G65800.1	protein_coding	receptor kinase 2	Encodes a putative receptor-like serine/threonine protein kinases that is similar to brassica self-incompatibility (S) locus. expressed in specifically in cotyledons, leaves, and sepals, in correlation with the maturation of these structures. Together with AtPUB9, it is required for auxin-mediated lateral root development under phosphate-starved conditions. The mRNA is cell-to-cell mobile.	receptor kinase 2;(source:Araport11)
AT1G65770.1	protein_coding	ascorbic acid mannose pathway regulator 1	Encodes AMR1 (Ascorbic acid Mannose Pathway Regulator 1).  Coordinately and negatively regulates the mannose/L-galactose ascorbic acid biosynthetic pathway in response to developmental and environmental cues.	ascorbic acid mannose pathway regulator 1;(source:Araport11)
AT1G65690.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	Encodes NHL6 (NDR1/HIN1-like 6). Plays an important role in the abiotic stresses-induced ABA signaling and biosynthesis, particularly during seed germination and early seedling development.	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT1G65780.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G65760.1	protein_coding	Protein of unknown function (DUF295)		ascorbic acid mannose pathway regulator (DUF295);(source:Araport11)
AT1G65790.1	protein_coding	receptor kinase 1	An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain.	receptor kinase 1;(source:Araport11)
AT1G65700.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT1G65710.1	protein_coding			serine/arginine repetitive matrix-like protein;(source:Araport11)
AT1G65810.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G65820.1	protein_coding	microsomal glutathione s-transferase, putative		microsomal glutathione s-transferase;(source:Araport11)
AT1G65840.1	protein_coding	polyamine oxidase 4	encodes a peroxisomal polyamine oxidase, involved in the back-conversion polyamine degradation pathway. Among the five polyamine oxidases in the Arabidopsis genome, PAO4 is the major isoform in root peroxisomes. The mRNA is cell-to-cell mobile.	polyamine oxidase 4;(source:Araport11)
AT1G43290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G43170.1	protein_coding	ribosomal protein 1	Encodes a cytoplasmic ribosomal protein. The mRNA is cell-to-cell mobile.	ribosomal protein 1;(source:Araport11)
AT1G43300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT1G43230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1);(source:TAIR10)
AT1G43240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 9.9e-77 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G43190.1	protein_coding	polypyrimidine tract-binding protein 3		polypyrimidine tract-binding protein 3;(source:Araport11)
AT1G43160.1	protein_coding	related to AP2 6	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily.	related to AP2 6;(source:Araport11)
AT1G43140.1	protein_coding	Cullin family protein		Cullin family protein;(source:Araport11)
AT1G43310.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT1G43260.1	protein_coding	hAT transposon superfamily protein		hAT transposon superfamily protein;(source:Araport11)
AT1G43200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287;(source:TAIR10)
AT1G28690.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G28570.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT1G28680.1	protein_coding	HXXXD-type acyl-transferase family protein	Catalyses trans-cis isomerization and  lactonization in the biosynthesis of coumarins in roots.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G28700.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein		Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G28670.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	Arabidopsis thaliana lipase	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G28660.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G28640.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G28650.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G28630.1	protein_coding			transcriptional regulator EFH1-like protein;(source:Araport11)
AT1G28610.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G28520.1	protein_coding	vascular plant one zinc finger protein	VOZ transcription factor which acts as positive regulator of several salt-responsive genes. Functionally redundant in salt stress with VOZ2.	vascular plant one zinc finger protein;(source:Araport11)
AT1G28590.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G28760.1	protein_coding	Uncharacterized conserved protein (DUF2215)	Encodes an orthlog of the Xenopus inner nuclear membrane (INM) protein Nemp1/TMEM194A.	guanosine-3,5-bis (diphosphate) 3-pyrophosphohydrolase, putative (DUF2215);(source:Araport11)
AT1G28600.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G28580.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G28710.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein		Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G74720.1	protein_coding	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein	Encodes a putative transmembrane protein carrying four C(2) domains, suggesting that QKY may function in membrane trafficking in a Ca(2+)-dependent fashion.  Mutant analysis shows that this gene is involved in organ development.	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT1G74560.1	protein_coding	NAP1-related protein 1	Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M  and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo. Plant mutated in both NRP1 and NRP2 genes show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. NRP genes act synergistically with NAP1 genes in promoting somatic homologous recombination.	NAP1-related protein 1;(source:Araport11)
AT1G74370.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G74580.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G74380.1	protein_coding	xyloglucan xylosyltransferase 5		xyloglucan xylosyltransferase 5;(source:Araport11)
AT1G74590.1	protein_coding	glutathione S-transferase TAU 10	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 10;(source:Araport11)
AT1G74390.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G74400.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G74410.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G74420.1	protein_coding	fucosyltransferase 3	Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1.	fucosyltransferase 3;(source:Araport11)
AT1G74430.1	protein_coding	myb domain protein 95	Encodes a putative transcription factor (MYB95). The mRNA is cell-to-cell mobile.	myb domain protein 95;(source:Araport11)
AT1G74600.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein	OTP87 appears to act as a trans-factor involved in the recognition of the two editing sites in mitochondrial genes nad7-C24 and atp1-C1178.	pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G74440.1	protein_coding	Protein of unknown function (DUF962)		ER membrane protein, putative (DUF962);(source:Araport11)
AT1G74450.1	protein_coding	Protein of unknown function (DUF793)	Plants overexpressing At1g74450 are stunted in height and have reduced male fertility.	BPS1-like protein (DUF793);(source:Araport11)
AT1G74620.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G74460.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G74630.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G74470.1	protein_coding	Pyridine nucleotide-disulphide oxidoreductase family protein	Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate. The mRNA is cell-to-cell mobile.	Pyridine nucleotide-disulfide oxidoreductase family protein;(source:Araport11)
AT1G74640.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G74480.1	protein_coding	RWP-RK domain-containing protein		RWP-RK domain-containing protein;(source:Araport11)
AT1G74490.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G74650.1	protein_coding	myb domain protein 31	Member of the R2R3 factor gene family.	myb domain protein 31;(source:Araport11)
AT1G74660.1	protein_coding	mini zinc finger 1	Encodes MINI ZINC FINGER 1 (MIF1) which has a zinc finger domain but lacks other protein motifs normally present in transcription factors. MIF1 physically interact with a group of zinc finger-homeodomain (ZHD) transcription factors, such as ZHD5 (AT1G75240), that regulate floral architecture and leaf development. Gel mobility shift assays revealed that MIF1 blocks the DNA binding activity of ZHD5 homodimers by competitively forming MIF1-ZHD5 heterodimers.  Constitutive overexpression of MIF1 caused dramatic developmental defects, seedlings were non-responsive to gibberellin (GA) for cell elongation, hypersensitive to the GA synthesis inhibitor paclobutrazol (PAC) and abscisic acid (ABA), and hyposensitive to  auxin, brassinosteroid and cytokinin, but normally responsive to ethylene.	mini zinc finger 1;(source:Araport11)
AT1G74670.1	protein_coding	Gibberellin-regulated family protein		Gibberellin-regulated family protein;(source:Araport11)
AT1G74500.1	protein_coding	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	Encodes a basic helix/loop/helix transcription factor that acts downstream of MP in root initiation. TMO7 protein moves  to the hypophysis and to vascular cells, contributing to MP-dependent root formation. Promotes the correct definition of the  hypophysis cell division plane.	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1;(source:Araport11)
AT1G74510.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G74520.1	protein_coding	HVA22 homologue A	Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible.	HVA22 homologue A;(source:Araport11)
AT1G74530.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G74540.1	protein_coding	cytochrome P450, family 98, subfamily A, polypeptide 8	Encodes a tricoumaroylspermidine / triferuloylspermidine meta-hydroxylase that participates in the formation of N<sup>1</sup>,N<sup>5</sup>-di(hydroxyferuloyol)- N<sup>10</sup>-sinapoyl spermidine, an important constituent of pollen. This gene appears to be expressed in young flower buds and inflorescence tips with notably high levels of expression in the tapetum and pollen.	cytochrome P450, family 98, subfamily A, polypeptide 8;(source:Araport11)
AT1G74550.1	protein_coding	cytochrome P450, family 98, subfamily A, polypeptide 9	Encodes a tricoumaroylspermidine meta-hydroxylase that participates in the formation of N<sup>1</sup>,N<sup>5</sup>-di(hydroxyferuloyol)- N<sup>10</sup>-sinapoylspermidine, an important constituent of pollen. This gene appears to be expressed in young flower buds and inflorescence tips with notably high levels of expression in the tapetum and pollen. It is also expressed in root tips.	cytochrome P450, family 98, subfamily A, polypeptide 9;(source:Araport11)
AT1G74360.1	protein_coding	Leucine-rich repeat protein kinase family protein	NILR1 encodes a serine/threonine kinase involved in defense response to nematodes.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G29840.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G29830.1	protein_coding	Magnesium transporter CorA-like family protein		Magnesium transporter CorA-like family protein;(source:Araport11)
AT1G29910.1	protein_coding	chlorophyll A/B binding protein 3	member of Chlorophyll a/b-binding protein family	chlorophyll A/B binding protein 3;(source:Araport11)
AT1G29820.1	protein_coding	Magnesium transporter CorA-like family protein		Magnesium transporter CorA-like family protein;(source:Araport11)
AT1G29810.1	protein_coding	Transcriptional coactivator/pterin dehydratase		Transcriptional coactivator/pterin dehydratase;(source:Araport11)
AT1G29900.1	protein_coding	carbamoyl phosphate synthetase B	Encodes carbamoyl phosphate synthetase (CPS) large subunit (CARB), also named as VEN3. Heterologous expression of the Arabidopsis VEN3 and VEN6 genes in a CPS-deficient Escherichia coli strain fully restored bacterial growth in minimal medium, demonstrating the enzymatic activity of the VEN3 and VEN6 proteins.	carbamoyl phosphate synthetase B;(source:Araport11)
AT1G29890.1	protein_coding	O-acetyltransferase family protein	Encodes a homolog of the protein Cas1p known to be involved in polysaccharide O-acetylation in Cryptococcus neoformans. Has high similarity to RWA2 whose mutant displays reduced acetylation. The protein is expressed in the Golgi and is involved in the acetylation of xylan during secondary wall biosynthesis.	O-acetyltransferase family protein;(source:Araport11)
AT1G29790.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G29930.1	protein_coding	chlorophyll A/B binding protein 1	Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center. The mRNA is cell-to-cell mobile.	chlorophyll A/B binding protein 1;(source:Araport11)
AT1G29880.1	protein_coding	glycyl-tRNA synthetase / glycine--tRNA ligase		glycyl-tRNA synthetase / glycine-tRNA ligase;(source:Araport11)
AT1G29770.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G29720.1	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G29870.1	protein_coding	tRNA synthetase class II (G, H, P and S) family protein		tRNA synthetase class II (G, H, P and S) family protein;(source:Araport11)
AT1G29760.1	protein_coding	Putative adipose-regulatory protein (Seipin)	Membrane protein involved in lipid droplet biogenesis primarily in pollen.	Putative adipose-regulatory protein (Seipin);(source:Araport11)
AT1G29780.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G29960.1	protein_coding	Peptidase S24/S26A/S26B/S26C family protein		Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT1G29800.1	protein_coding	RING/FYVE/PHD-type zinc finger family protein		RING/FYVE/PHD-type zinc finger family protein;(source:Araport11)
AT1G29740.1	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G29920.1	protein_coding	chlorophyll A/B-binding protein 2	Encodes lhcb1.1 a component of the LHCIIb light harvesting complex associated with photosystem II.	chlorophyll A/B-binding protein 2;(source:Araport11)
AT1G29850.1	protein_coding	double-stranded DNA-binding family protein	Encodes a protein that by its interaction with HAM acetyltransferases plays an important role during DNA damage responses induced by UV-B radiation and participates in programmed cell death programs.	double-stranded DNA-binding family protein;(source:Araport11)
AT1G29860.1	protein_coding	WRKY DNA-binding protein 71	member of WRKY Transcription Factor; Group II-c	WRKY DNA-binding protein 71;(source:Araport11)
AT1G64630.1	protein_coding	with no lysine (K) kinase 10		with no lysine (K) kinase 10;(source:Araport11)
AT1G64550.1	protein_coding	general control non-repressible 3	Encodes a member of GCN subfamily. Predicted to be involved in stress-associated protein translation control. The mutant is affected in MAMP ((microbe-associated molecular patterns)-induced stomatal closure, but not other MAMP-induced responses in the leaves.	general control non-repressible 3;(source:Araport11)
AT1G64640.1	protein_coding	early nodulin-like protein 8		early nodulin-like protein 8;(source:Araport11)
AT1G64460.1	protein_coding	Protein kinase superfamily protein		phosphatidylinositol 4-kinase gamma-like protein;(source:Araport11)
AT1G64530.1	protein_coding	Plant regulator RWP-RK family protein		Plant regulator RWP-RK family protein;(source:Araport11)
AT1G64650.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G64570.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT1G64480.1	protein_coding	calcineurin B-like protein 8	calcineurin B-like protein 8, member of plant-specific family of calcium sensor proteins containing 3 EF-hand motifs	calcineurin B-like protein 8;(source:Araport11)
AT1G64560.1	pseudogene		pseudogene of S-adenosylmethionine-dependent methyltransferase/rRNA (adenine-N6,N6-)-dimethyltransferase/rRNA methyltransferase	pseudogene of Ribosomal RNA adenine dimethylase family protein;(source:Araport11)
AT1G64660.1	protein_coding	methionine gamma-lyase	Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis. The mRNA is cell-to-cell mobile.	methionine gamma-lyase;(source:Araport11)
AT1G64580.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G64670.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a epidermally expressed extracellular protein that likely functions as an alpha-beta hydrolase and is required for normal cuticle formation. Homozygous mutant plants are dwarfed and have abnormal leaves, collapsed cells, reduced numbers of trichomes. The specific role of BDG is unclear: it may function in cutin biosynthesis or as a cross-linking enzyme in the cell wall itself.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G64490.1	protein_coding	DEK, chromatin associated protein		DEK, chromatin associated protein;(source:Araport11)
AT1G64590.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G64500.1	protein_coding	Glutaredoxin family protein	A member of a protein family found in plants and animals that contain conserved C-terminal glutaredoxin-like and putative zinc-binding cysteine-rich domains. It is involved in light stimulated actin bundling and chloroplast movement. The mRNA is cell-to-cell mobile.	Glutaredoxin family protein;(source:Araport11)
AT1G64600.1	protein_coding	methyltransferases;copper ion binding		copper ion binding / methyltransferase;(source:Araport11)
AT1G64510.1	protein_coding	Translation elongation  factor EF1B/ribosomal protein S6 family protein		Translation elongation factor EF1B/ribosomal protein S6 family protein;(source:Araport11)
AT1G64610.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G64620.1	protein_coding	Dof-type zinc finger DNA-binding family protein		Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT1G64520.1	protein_coding	regulatory particle non-ATPase 12A		regulatory particle non-ATPase 12A;(source:Araport11)
AT1G64540.1	protein_coding	F-box/FBD-like domains containing protein		F-box/FBD-like domains containing protein;(source:Araport11)
AT1G67330.1	protein_coding	Protein of unknown function (DUF579)	Arabinogalactan methylesterase,involved in arabinogalactan glucuronic acid methylation.	glucuronoxylan 4-O-methyltransferase-like protein (DUF579);(source:Araport11)
AT1G67240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.5e-23 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G67230.1	protein_coding	little nuclei1	Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. Member of a small gene family in Arabidopsis containing 4 proteins (LNC1-4 or CRWN 1-4) with redundant functions in protection from oxidative damage, control of nuclear morphology and degradation of ABI5.	little nuclei1;(source:Araport11)
AT1G67310.1	protein_coding	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains		Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain;(source:Araport11)
AT1G67320.1	protein_coding	DNA primase, large subunit family		DNA primase, large subunit family;(source:Araport11)
AT1G67400.1	protein_coding	ELMO/CED-12 family protein		ELMO/CED-12 family protein;(source:Araport11)
AT1G67300.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G67390.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G67290.1	protein_coding	glyoxal oxidase-related protein		glyoxal oxidase-related protein;(source:Araport11)
AT1G67370.1	protein_coding	DNA-binding HORMA family protein	meiotic asynaptic mutant 1 (ASY1). ASY1 protein is  initially distributed as numerous foci throughout the  chromatin. During early G2, the foci are juxtaposed to  the nascent chromosome axes to form a continuous axis associated  signal.	DNA-binding HORMA family protein;(source:Araport11)
AT1G67280.1	protein_coding	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein	Encodes a Ni+ dependent glyoxylase.	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein;(source:Araport11)
AT1G67360.1	protein_coding	Rubber elongation factor protein (REF)	Encodes a small rubber particle protein homolog.  Plays dual roles as positive factors for tissue growth and development and in drought stress responses.	Rubber elongation factor protein (REF);(source:Araport11)
AT1G67270.1	protein_coding	Zinc-finger domain of monoamine-oxidase A repressor R1 protein		Zinc-finger domain of monoamine-oxidase A repressor R1 protein;(source:Araport11)
AT1G67350.1	protein_coding			NADH-ubiquinone oxidoreductase;(source:Araport11)
AT1G67260.1	protein_coding	TCP family transcription factor 	Encodes protein with TCP (TB1,CYC,PCF) domain which is likely to be involved in DNA binding and protein-protein interactions. Based on genome analysis, there is a 9-member gene family that possesses this domain in Arabidopsis. Orthologue of Antirrhinum gene CYCLOIDEA.	TCP family transcription factor;(source:Araport11)
AT1G67250.1	protein_coding	Proteasome maturation factor UMP1		Proteasome maturation factor UMP1;(source:Araport11)
AT1G67340.1	protein_coding	HCP-like superfamily protein with MYND-type zinc finger		HCP-like superfamily protein with MYND-type zinc finger;(source:Araport11)
AT1G74320.1	protein_coding	Protein kinase superfamily protein	encodes a choline kinase, whose expression is induced by high salt and mannitol.	Protein kinase superfamily protein;(source:Araport11)
AT1G74280.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G74230.1	protein_coding	glycine-rich RNA-binding protein 5	encodes a glycine-rich RNA binding protein. The mRNA is cell-to-cell mobile.	glycine-rich RNA-binding protein 5;(source:Araport11)
AT1G74270.1	protein_coding	Ribosomal protein L35Ae family protein		Ribosomal protein L35Ae family protein;(source:Araport11)
AT1G74220.1	protein_coding			homeobox-like protein;(source:Araport11)
AT1G74260.1	protein_coding	purine biosynthesis 4	Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.	purine biosynthesis 4;(source:Araport11)
AT1G74210.1	protein_coding	PLC-like phosphodiesterases superfamily protein	Encodes a member of the glycerophosphodiester phosphodiesterase (GDPD) family.	PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT1G74250.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G74200.1	protein_coding	receptor like protein 16		receptor like protein 16;(source:Araport11)
AT1G74240.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G74310.1	protein_coding	heat shock protein 101	Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.	heat shock protein 101;(source:Araport11)
AT1G74300.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G74290.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G66960.1	protein_coding	Terpenoid cyclases family protein		Terpenoid cyclases family protein;(source:Araport11)
AT1G66980.1	protein_coding	suppressor of npr1-1 constitutive 4	Encodes SNC4 (suppressor of npr1-1, constitutive 4), an atypical receptor-like kinase with two predicted extracellular glycerophosphoryl diester phosphodiesterase domains.	suppressor of npr1-1 constitutive 4;(source:Araport11)
AT1G67000.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G67080.1	protein_coding	abscisic acid (aba)-deficient 4	Encodes a protein involved in the photoprotection of PSII. An aba4-1 mutant completely lacks neoxanthin,a component of the chromophore of the peripheral antenna system in PSII. ABA4 is required for neoxanthin biosynthesis, an intermediary step in abscisic acid biosynthesis, but no catalytic activity has been detected for the ABA4 protein.	abscisic acid (aba)-deficient 4;(source:Araport11)
AT1G67030.1	protein_coding	zinc finger protein 6	Encodes a novel C2H2 zinc finger protein containing only a single zinc finger which plays a key role in regulating trichome development by integrating GA and cytokinin signaling. The mRNA is cell-to-cell mobile.	zinc finger protein 6;(source:Araport11)
AT1G67040.1	protein_coding			DnaA initiator-associating protein;(source:Araport11)
AT1G67050.1	protein_coding			membrane-associated kinase regulator;(source:Araport11)
AT1G66970.1	protein_coding	SHV3-like 2	Encodes a member of the glycerophosphodiester phosphodiesterase like (GDPD-like) family.	SHV3-like 2;(source:Araport11)
AT1G67060.1	protein_coding			peptidase M50B-like protein;(source:Araport11)
AT1G67070.1	protein_coding	Mannose-6-phosphate isomerase, type I	Encodes a protein with phosphomannose isomerase activity that is involved in synthesis of ascorbic acid. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	Mannose-6-phosphate isomerase, type I;(source:Araport11)
AT1G67020.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G36910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.0e-81 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G36920.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G79580.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G79600.1	protein_coding	Protein kinase superfamily protein	Encodes a chloroplast ABC1-like kinase that regulates vitamin E metabolism.	Protein kinase superfamily protein;(source:Araport11)
AT1G79680.1	protein_coding	WALL ASSOCIATED KINASE (WAK)-LIKE 10	Encodes a twin-domain, kinase-GC signaling molecule that may function in biotic stress responses that is critically dependent on the second messenger cGMP.	WALL ASSOCIATED KINASE (WAK)-LIKE 10;(source:Araport11)
AT1G79690.1	protein_coding	nudix hydrolase homolog 3		nudix hydrolase homolog 3;(source:Araport11)
AT1G79610.1	protein_coding	Na+/H+ antiporter 6	Encodes an endosomal Na(+)/H(+) antiporter: AT1G54370 (NHX5), AT1G79610 (NHX6). Double knockout nhx5 nhx6 showed reduced growth, with smaller and fewer cells and increased sensitivity to salinity.	Na+/H+ antiporter 6;(source:Araport11)
AT1G79590.1	protein_coding	syntaxin of plants 52	Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.	syntaxin of plants 52;(source:Araport11)
AT1G79620.1	protein_coding	Leucine-rich repeat protein kinase family protein	VRLK1 is a LRR kinase involved in switching between cell elongation and secondary cell wall thickening.VRLK1 is a member of a gene family that includes a small number of recently duplicated paralogs.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G79630.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G79640.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G79650.1	protein_coding	Rad23 UV excision repair protein family	Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.	Rad23 UV excision repair protein family;(source:Araport11)
AT1G79660.1	protein_coding			ephrin-A3 protein;(source:Araport11)
AT1G79670.1	protein_coding	Wall-associated kinase family protein	Encodes a receptor-like kinase that does not contain an extracellular leucine-rich repeat domain.  A novel type of dominant disease-resistance protein that confers resistance to a broad spectrum of Fusarium races.	Wall-associated kinase family protein;(source:Araport11)
AT1G10660.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G10620.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT1G10670.1	protein_coding	ATP-citrate lyase A-1	One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase.  Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.	ATP-citrate lyase A-1;(source:Araport11)
AT1G10630.1	protein_coding	ADP-ribosylation factor A1F	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	ADP-ribosylation factor A1F;(source:Araport11)
AT1G10680.1	protein_coding	P-glycoprotein 10		P-glycoprotein 10;(source:Araport11)
AT1G10640.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G10650.1	protein_coding	SBP (S-ribonuclease binding protein) family protein		SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT1G54300.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G54320.1	protein_coding	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein		LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein;(source:Araport11)
AT1G54530.1	protein_coding	Calcium-binding EF hand family protein		Calcium-binding EF hand family protein;(source:Araport11)
AT1G54380.1	protein_coding	spliceosome protein-related	Encodes GEMIN2, a spliceosomal small nuclear ribonucleoprotein assembly factor conserved from yeast to humans. GEMIN2 is a key component of a posttranscriptional regulatory mechanism that ensures the appropriate acclimation of plants to daily and seasonal changes in temperature conditions. It controls the alternative splicing of several circadian clock genes and attenuates the effects of temperature on the circadian period.	spliceosome protein-like protein;(source:Araport11)
AT1G54400.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G54280.1	protein_coding	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein	Encodes a member of the P4 subfamily of P-type ATPases expressed in the pollen plasma membrane.  Double mutants with ALA7 display pollen and pollen tube defects.	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT1G54450.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT1G54460.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family		TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT1G54310.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G54470.1	protein_coding	RNI-like superfamily protein	Encodes a Cf-like gene in Arabidopsis that confers downy mildew resistance to several isolates of Peronospora parasitica.	resistance to peronospora parasitica protein;(source:Araport11)
AT1G54390.1	protein_coding	PHD finger protein-related	ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	PHD finger protein-like protein;(source:Araport11)
AT1G54370.1	protein_coding	sodium hydrogen exchanger 5	Encodes an endosomal Na(+)/H(+) antiporter: AT1G54370 (NHX5), AT1G79610 (NHX6). Double knockout nhx5 nhx6 showed reduced growth, with smaller and fewer cells and increased sensitivity to salinity.	sodium hydrogen exchanger 5;(source:Araport11)
AT1G54490.1	protein_coding	exoribonuclease 4	Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing. The mRNA is cell-to-cell mobile.	exoribonuclease 4;(source:Araport11)
AT1G54270.1	protein_coding	eif4a-2	member of eIF4A - eukaryotic initiation factor 4A	eif4a-2;(source:Araport11)
AT1G54500.1	protein_coding	Rubredoxin-like superfamily protein	RBD1 is a thylakoid membrane-bound iron-binding protein that is required for the proper assembly of photosystem II in Arabidopsis. It is found in all oxygenic photoautotrophic organisms (plants, algae and cyanobacteria).	Rubredoxin-like superfamily protein;(source:Araport11)
AT1G54290.1	protein_coding	Translation initiation factor SUI1 family protein		Translation initiation factor SUI1 family protein;(source:Araport11)
AT1G54210.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT1G54420.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G54430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1);(source:TAIR10)
AT1G54440.1	protein_coding	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	Rrp6-like protein, controls RNA-directed DNA methylation by helping with the retention of noncoding RNAs in normal cells.	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein;(source:Araport11)
AT1G54230.1	protein_coding	Winged helix-turn-helix transcription repressor DNA-binding		Winged helix-turn-helix transcription repressor DNA-binding protein;(source:Araport11)
AT1G54330.1	protein_coding	NAC domain containing protein 20		NAC domain containing protein 20;(source:Araport11)
AT1G54340.1	protein_coding	isocitrate dehydrogenase	NADP-specific isocitrate dehydrogenase (ICDH) The mRNA is cell-to-cell mobile.	isocitrate dehydrogenase;(source:Araport11)
AT1G54350.1	protein_coding	ABC transporter family protein		ABC transporter family protein;(source:Araport11)
AT1G54360.1	protein_coding	TBP-ASSOCIATED FACTOR 6B	Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.	TBP-ASSOCIATED FACTOR 6B;(source:Araport11)
AT1G54510.1	protein_coding	NIMA-related serine/threonine kinase 1	Encodes AtNEK1, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related serine/threonine kinase 1;(source:Araport11)
AT1G54200.1	protein_coding			DNA mismatch repair Msh6-like protein;(source:Araport11)
AT1G54520.1	protein_coding		FLAP1 is a chloroplast membrane protein of unknown function. When grown in variable  light mutants have reduced chloroplast number and size. NPQ is increased relative to wild type under low light.	myelin-associated oligodendrocyte basic protein;(source:Araport11)
AT1G54540.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT1G54550.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G54220.1	protein_coding	Dihydrolipoamide acetyltransferase, long form protein	Encodes a subunit of the mitochondrial pyruvate dehydrogenase complex.	Dihydrolipoamide acetyltransferase, long form protein;(source:Araport11)
AT1G54410.1	protein_coding	dehydrin family protein	Encodes a KS-type dehydrin can reduce the formation of reactive oxygen species (ROS) from Cu.	dehydrin family protein;(source:Araport11)
AT1G54240.1	protein_coding	winged-helix DNA-binding transcription factor family protein		winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT1G54250.1	protein_coding	RNA polymerase Rpb8	One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II and V; homologous to  budding yeast  RPB8.  Probably redundant with At3g59600.	RNA polymerase Rpb8;(source:Araport11)
AT1G54260.1	protein_coding	winged-helix DNA-binding transcription factor family protein		winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT1G04090.1	protein_coding	Plant protein of unknown function (DUF946)		vacuolar sorting-associated protein (DUF946);(source:Araport11)
AT1G04220.1	protein_coding	3-ketoacyl-CoA synthase 2	Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 2;(source:Araport11)
AT1G04210.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes a putative Raf-related kinase.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G04130.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808).  Interacts with Hsp90/Hsp70 as co-chaperone.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G04200.1	protein_coding			dyggve-melchior-clausen syndrome protein;(source:Araport11)
AT1G04120.1	protein_coding	multidrug resistance-associated protein 5	encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C.	multidrug resistance-associated protein 5;(source:Araport11)
AT1G04190.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G04110.1	protein_coding	Subtilase family protein	Initially identified as a mutation affecting stomatal development and distribution. Encodes a protein similar to serine proteases.	Subtilase family protein;(source:Araport11)
AT1G04180.1	protein_coding	YUCCA 9		YUCCA 9;(source:Araport11)
AT1G04100.1	protein_coding	indoleacetic acid-induced protein 10	Auxin induced gene, IAA10 (IAA10).	indoleacetic acid-induced protein 10;(source:Araport11)
AT1G04170.1	protein_coding	eukaryotic translation initiation factor 2 gamma subunit	protein synthesis initiation factor eIF2 gamma The mRNA is cell-to-cell mobile.	eukaryotic translation initiation factor 2 gamma subunit;(source:Araport11)
AT1G04160.1	protein_coding	myosin XI B	Encodes a member of the type XI myosin protein family involved in root hair elongation.	myosin XI B;(source:Araport11)
AT1G04150.1	protein_coding	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein		C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT1G04140.1	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT1G17200.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT1G17190.1	protein_coding	glutathione S-transferase tau 26	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase tau 26;(source:Araport11)
AT1G17180.1	protein_coding	glutathione S-transferase TAU 25	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  Detoxification of the environmental pollutant 2,4,6-trinitrotoluene. Arabidopsis plant over-expressing At1g17180 were more resistant to TNT, removed more TNT from sterile and soil-based media, and had reduced levels of glutathione when grown in the presence of TNT.	glutathione S-transferase TAU 25;(source:Araport11)
AT1G17170.1	protein_coding	glutathione S-transferase TAU 24	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). It is involved in the detoxification of the environmental pollutant 2,4,6-trinitrotoluene. Arabidopsis plants over-expressing At1g17170 were more resistant to TNT, removed more TNT from sterile and soil-based media, and had reduced levels of glutathione when grown in the presence of TNT.	glutathione S-transferase TAU 24;(source:Araport11)
AT1G17160.1	protein_coding	pfkB-like carbohydrate kinase family protein	RBSK is a plastid localized ribokinase involved in nucleoside metabolism. It is the only member of this gene family in Arabidopsis.	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT1G17140.1	protein_coding	interactor of constitutive active rops 1	Encodes a ROP/RAC effector, designated interactor of constitutive active ROPs 1 (ICR1), that interacts with GTP-bound ROPs. ICR1 is a scaffold mediating formation of protein complexes that are required for cell polarity.  ICR1 is comprised of coiled-coil domains and forms complexes with itself and the exocyst vesicle-tethering complex subunit SEC3.	interactor of constitutive active rops 1;(source:Araport11)
AT1G17150.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G16980.1	protein_coding	trehalose-phosphatase/synthase 2	Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.	trehalose-6-phosphate synthase;(source:Araport11)
AT1G17130.1	protein_coding	Family of unknown function (DUF572)	DUF572 domain protein involved in alternative splicing.	coiled-coil protein (DUF572);(source:Araport11)
AT1G17260.1	protein_coding	autoinhibited H(+)-ATPase isoform 10	Belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis,  disturbs the vacuolar biogenesis and acidification process. The acidification of the vacuole provides energy for import of proanthocyanidins into the vacuole. TT13/AHA10 energizes TT12, the MATE transporter for import of proanthocyanidins into the vacuole.	autoinhibited H[+]-ATPase isoform 10;(source:Araport11)
AT1G17250.1	protein_coding	receptor like protein 3		receptor like protein 3;(source:Araport11)
AT1G17120.1	protein_coding	cationic amino acid transporter 8	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs.	cationic amino acid transporter 8;(source:Araport11)
AT1G17280.1	protein_coding	ubiquitin-conjugating enzyme 34	Group XIV ubiquitin-conjugating enzyme that functions negative regulation of drought stress.	ubiquitin-conjugating enzyme 34;(source:Araport11)
AT1G17240.1	protein_coding	receptor like protein 2	Encodes a CLAVATA2 (CLV2)-related gene. Complements the clv2 mutant when expressed under the control of the CLV2 promoter.	receptor like protein 2;(source:Araport11)
AT1G17110.1	protein_coding	ubiquitin-specific protease 15	Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant.	ubiquitin-specific protease 15;(source:Araport11)
AT1G17230.1	protein_coding	Leucine-rich receptor-like protein kinase family protein		Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT1G17220.1	protein_coding	Translation initiation factor 2, small GTP-binding protein	Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal. The mRNA is cell-to-cell mobile.	Translation initiation factor 2, small GTP-binding protein;(source:Araport11)
AT1G17270.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G17210.1	protein_coding	IAP-like protein 1		IAP-like protein 1;(source:Araport11)
AT1G55750.1	protein_coding	BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)		BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins);(source:Araport11)
AT1G55740.1	protein_coding	seed imbibition 1		seed imbibition 1;(source:Araport11)
AT1G55610.1	protein_coding	BRI1 like	mutant has Altered vascular cell differentiation; LRR Receptor Kinase	BRI1 like;(source:Araport11)
AT1G55730.1	protein_coding	cation exchanger 5	member of Low affinity calcium antiporter CAX2 family	cation exchanger 5;(source:Araport11)
AT1G55600.1	protein_coding	WRKY DNA-binding protein 10	member of WRKY Transcription Factor; Group I. It has WRKY domain at its N terminal end and zinc-finger like motif.	WRKY DNA-binding protein 10;(source:Araport11)
AT1G55710.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G55590.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT1G55700.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G55690.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G55720.1	protein_coding	cation exchanger 6	member of Low affinity calcium antiporter CAX2 family	vacuolar cation/proton exchanger;(source:Araport11)
AT1G55670.1	protein_coding	photosystem I subunit G	Encodes subunit G of photosystem I, an 11-kDa membrane protein that plays an  important role in electron transport between plastocyanin and PSI and is involved in  the stability of the PSI complex. PSI-G subunit is bound to  PSI-B and is in contact with Lhca1. The protein inserts into thylakoids by  a direct or "spontaneous" pathway that does not involve the activities of  any known chloroplast protein-targeting machinery. PSI-G appears to be directly or indirectly involved in the interaction between Photosystem I and plastocyanin.	photosystem I subunit G;(source:Araport11)
AT1G55770.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G55680.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G55650.1	protein_coding	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain		HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT1G55760.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT1G55630.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G55640.1	protein_coding	prenylated RAB acceptor 1.G1		prenylated RAB acceptor 1.G1;(source:Araport11)
AT1G55660.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein	FOF2, is the F-box protein family. Overexpression of FOF2 results in delayed transitions to flowering under both LD and SD conditions.	FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G55620.1	protein_coding	chloride channel F	Encodes a chloride channel protein that has been localized to the chloroplast and golgi apparatus. Complements yeast gef1 mutant and therefor may function to acidify the golgi lumen.	chloride channel F;(source:Araport11)
AT1G70170.1	protein_coding	matrix metalloproteinase	mutant has Late flowering; Early senescence; Matrix Metalloproteinase	matrix metalloproteinase;(source:Araport11)
AT1G70160.1	protein_coding			zinc finger MYND domain protein;(source:Araport11)
AT1G69990.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G70060.1	protein_coding	SIN3-like 4	Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190). The mRNA is cell-to-cell mobile.	SIN3-like 4;(source:Araport11)
AT1G70140.1	protein_coding	formin 8	Encodes a group I formin. Binds to F-actin barbed ends. Has severing actin filaments activity. Binds profilin. Involved in the initiation and tip growth of root hairs through regulation of actin cytoskeleton.	formin 8;(source:Araport11)
AT1G70070.1	protein_coding	DEAD/DEAH box helicase, putative	Allelic to ISE2(increased size  exclusion limit of plasmodesmata 2).  Mutants maintain dilated plasmodesmata at the embryonic torpedo stage.	DEAD/DEAH box helicase;(source:Araport11)
AT1G70150.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT1G70250.1	protein_coding	receptor serine/threonine kinase, putative	Encodes a Protease inhibitor/seed storage/LTP family protein.	receptor serine/threonine kinase;(source:Araport11)
AT1G70040.1	protein_coding	Protein of unknown function (DUF1163)		transmembrane protein, putative (DUF1163);(source:Araport11)
AT1G70130.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT1G70030.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G70110.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT1G70020.1	protein_coding	Protein of unknown function (DUF1163)		transmembrane protein, putative (DUF1163);(source:Araport11)
AT1G70100.1	protein_coding			neurofilament heavy protein;(source:Araport11)
AT1G70230.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 27	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. A putative xyloglucan O-acetyltransferase. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 27;(source:Araport11)
AT1G70010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.2e-289 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G70090.1	protein_coding	glucosyl transferase family 8	Encodes a protein with  putative galacturonosyltransferase activity.	glucosyl transferase family 8;(source:Araport11)
AT1G70180.1	protein_coding	Sterile alpha motif (SAM) domain-containing protein		Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT1G70220.1	protein_coding	RNA-processing, Lsm domain		RNA-processing, Lsm domain-containing protein;(source:Araport11)
AT1G70000.1	protein_coding	myb-like transcription factor family protein	Encodes a MYB-like Domain transcription factor that plays a positive role in anthocyanin accumulation in response to light and cytokinin via repression of MYBL2.MYBD expression increased in response to light or cytokinin, and MYBD enhanced anthocyanin biosynthesis via the repression of MYBL2 encoding for a transcription factor that had a negative effect on this process. In addition, MYBD can bind in vivo to the MYBL2 promoter and a lower level of histone H3K9 acetylation (H3K9ac) at upstream region of MYBL2 in MYBD-OX in comparison to wild-type plants, implies that MYBD represses MYBL2 expression via an epigenetic mechanism.	myb-like transcription factor family protein;(source:Araport11)
AT1G70080.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein	Terpene synthase. Expressed in roots and has low enzyme activity in vitro. Products include dolabellane type diterpenes.	Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT1G70210.1	protein_coding	CYCLIN D1;1	Encodes a D-type cyclin that physically interacts with CDC2A.  Its expression is upregulated early during germination.	CYCLIN D1;(source:Araport11)
AT1G70200.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a RNA-Binding Protein RBD1. Promotes chilling tolerance through 23S rRNA processing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G69980.1	protein_coding			structural polyprotein;(source:Araport11)
AT1G70190.1	protein_coding	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like		ribosomal protein L7/L12 domain-containing protein;(source:Araport11)
AT1G69970.1	protein_coding	CLAVATA3/ESR-RELATED 26	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. Can not replace CLV3 function in vivo.	CLAVATA3/ESR-RELATED 26;(source:Araport11)
AT1G70260.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	Encodes an endoplasmic reticulum (ER)-localized nodulin MtN21-like transporter family protein that negatively regulates resistance against biotrophic pathogens but not the necrotrophic pathogen, B. cinerea, possibly by regulating ROS production, cell death and PR1 expression.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G70120.1	protein_coding	Protein of unknown function (DUF1163)		transmembrane protein, putative (DUF1163);(source:Araport11)
AT1G03540.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G03740.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G03530.1	protein_coding	nuclear assembly factor 1		nuclear assembly factor 1;(source:Araport11)
AT1G03650.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G03730.1	protein_coding			pyrroline-5-carboxylate reductase;(source:Araport11)
AT1G03440.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G03630.1	protein_coding	protochlorophyllide oxidoreductase C	Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.	protochlorophyllide oxidoreductase C;(source:Araport11)
AT1G03710.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT1G03520.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G03620.1	protein_coding	ELMO/CED-12 family protein		ELMO/CED-12 family protein;(source:Araport11)
AT1G03420.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family	transposable_element_gene;(source:Araport11)
AT1G03510.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G03610.1	protein_coding	Protein of unknown function (DUF789)		plant/protein (DUF789);(source:Araport11)
AT1G03700.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT1G03720.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT1G03600.1	protein_coding	photosystem II family protein	PSB27 is a chloroplast lumen localized protein that is involved in adaptation to changes in light intensity.	photosystem II family protein;(source:Araport11)
AT1G03410.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G03490.1	protein_coding	NAC domain containing protein 6		NAC domain containing protein 6;(source:Araport11)
AT1G03560.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G03400.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G03550.1	protein_coding	Secretory carrier membrane protein (SCAMP) family protein		Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT1G03670.1	protein_coding	ankyrin repeat family protein	Ankyrin repeat containing protein	ankyrin repeat family protein;(source:Araport11)
AT1G03390.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G03470.1	protein_coding	Kinase interacting (KIP1-like) family protein	Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the nuclear membrane and the vacuolar membrane.	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT1G03660.1	protein_coding	Ankyrin-repeat containing protein		Ankyrin-repeat containing protein;(source:Araport11)
AT1G03380.1	protein_coding	homolog of yeast autophagy 18 (ATG18) G		yeast autophagy 18 G-like protein;(source:Araport11)
AT1G03590.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G03430.1	protein_coding	histidine-containing phosphotransfer factor 5	Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	histidine-containing phosphotransfer factor 5;(source:Araport11)
AT1G48170.1	protein_coding			proteasome assembly chaperone;(source:Araport11)
AT1G48160.1	protein_coding	signal recognition particle 19 kDa protein, putative / SRP19, putative		signal recognition particle 19 kDa protein, putative / SRP19;(source:Araport11)
AT1G48150.1	protein_coding	MADS-box transcription factor family protein		MADS-box transcription factor family protein;(source:Araport11)
AT1G48220.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G48140.1	protein_coding	dolichol-phosphate mannosyltransferase-related	Encodes a subunit of the dolichol phosphate mannase synthase (DPMS) complex that may serve as membrane anchors for the catalytic core, DPMS1, or provide catalytic assistance. It is localized in the ER and mediates isoprenyl-linked glycan biogenesis.	dolichol-phosphate mannosyltransferase-like protein;(source:Araport11)
AT1G48210.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G48130.1	protein_coding	1-cysteine peroxiredoxin 1	encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.	1-cysteine peroxiredoxin 1;(source:Araport11)
AT1G48200.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G48190.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G48120.1	protein_coding	hydrolases;protein serine/threonine phosphatases	Encodes a nuclear localized aminotransferase-like protein containing a plant mobile domain.	serine/threonine-protein phosphatase 7 long form-like protein;(source:Araport11)
AT1G48180.1	protein_coding			target of trans acting-siR480/255 protein;(source:Araport11)
AT1G48110.1	protein_coding	evolutionarily conserved C-terminal region 7		evolutionarily conserved C-terminal region 7;(source:Araport11)
AT1G48100.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G13700.1	protein_coding	6-phosphogluconolactonase 1	Encodes a cytosolic 6-phosphogluconolactonase (PGL) thought to be involved in the oxidative pentose-phosphate pathway (OPPP).	6-phosphogluconolactonase 1;(source:Araport11)
AT1G13710.1	protein_coding	cytochrome P450, family 78, subfamily A, polypeptide 5	Encodes the cytochrome P450 CYP78A5 monooxygenase.  Contributes to the generation of a growth-stimulating signal distinct from the classical phytohormones that prevents proliferation arrest, promoting organ growth. In ovules it is required for megagametogenesis, maternal control of seed size and restricting megaspore mother cell fate to a single cell.	cytochrome P450, family 78, subfamily A, polypeptide 5;(source:Araport11)
AT1G13730.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT1G13740.1	protein_coding	ABI five binding protein 2	Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent.	ABI five binding protein 2;(source:Araport11)
AT1G13640.1	protein_coding	Phosphatidylinositol 3- and 4-kinase family protein		Phosphatidylinositol 3- and 4-kinase family protein;(source:Araport11)
AT1G13750.1	protein_coding	Purple acid phosphatases superfamily protein	Encodes a purple acid phosphatase whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in roots.	Purple acid phosphatases superfamily protein;(source:Araport11)
AT1G13650.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G13760.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G13770.1	protein_coding	Protein of unknown function, DUF647		root UVB sensitive protein (Protein of unknown function, DUF647);(source:Araport11)
AT1G13670.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G13680.1	protein_coding	PLC-like phosphodiesterases superfamily protein		PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT1G13690.1	protein_coding	ATPase E1	AtE1 - stimulates the ATPase activity of DnaK/DnaJ	ATPase E1;(source:Araport11)
AT1G34700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.6e-83 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G34660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.1e-114 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT1G34650.1	protein_coding	homeodomain GLABROUS 10	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	homeodomain GLABROUS 10;(source:Araport11)
AT1G34730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36840.1);(source:TAIR10)
AT1G34720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27800.1);(source:TAIR10)
AT1G34670.1	protein_coding	myb domain protein 93	Encodes a member of the R2R3 transcription factor gene family that is a negative regulator of lateral root (LR) development. It has been proposed that this transcription factor is part of a novel negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place.	myb domain protein 93;(source:Araport11)
AT1G34710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14780.1);(source:TAIR10)
AT1G24480.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G24390.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G24470.1	protein_coding	beta-ketoacyl reductase 2	Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.	beta-ketoacyl reductase 2;(source:Araport11)
AT1G24380.1	protein_coding			no-apical-meristem-associated carboxy-terminal domain protein;(source:Araport11)
AT1G24370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1);(source:TAIR10)
AT1G24450.1	protein_coding	Ribonuclease III family protein		Ribonuclease III family protein;(source:Araport11)
AT1G24360.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G24440.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G24530.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G24430.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G24520.1	protein_coding	homolog of Brassica campestris pollen protein 1	Male fertility gene acting on tapetum and microspore	homolog of Brassica campestris pollen protein 1;(source:Araport11)
AT1G24620.1	protein_coding	EF hand calcium-binding protein family	Encodes a EF-hand calcium-binding protein family member. Mutants exhibit longer root hairs under phosphate-deficient conditions.	EF hand calcium-binding protein family;(source:Araport11)
AT1G24510.1	protein_coding	TCP-1/cpn60 chaperonin family protein		TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT1G24420.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G24610.1	protein_coding	Rubisco methyltransferase family protein		Rubisco methyltransferase family protein;(source:Araport11)
AT1G24400.1	protein_coding	lysine histidine transporter 2	High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthers	lysine histidine transporter 2;(source:Araport11)
AT1G24590.1	protein_coding	DORNROSCHEN-like	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE.  This gene functions in the regeneration of shoots in tissue culture, probably through transcriptional regulation of CUC1.  May also be involved in activation of the cell cycle via CycD1;1.	DORNROSCHEN-like protein;(source:Araport11)
AT1G24560.1	protein_coding		Effector molecule of the plant-unique RAB5, ARA6. Acts in the vacuolar/endocytic trafficking pathway with canonical RAB5 and SYP. Promotes recruitment of VSP9a onto the endosome, which is required for efficient RAB5 activation. Colocalizes with RAB5 on endosomes, where it coordinates transport with canonical RAB5.	paramyosin;(source:Araport11)
AT1G24540.1	protein_coding	cytochrome P450, family 86, subfamily C, polypeptide 1	member of CYP86C	cytochrome P450, family 86, subfamily C, polypeptide 1;(source:Araport11)
AT1G04040.1	protein_coding	HAD superfamily, subfamily IIIB acid phosphatase 		HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT1G03950.1	protein_coding	vacuolar protein sorting-associated protein 2.3		vacuolar protein sorting-associated protein 2.3;(source:Araport11)
AT1G03790.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein	Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein.  SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G04010.1	protein_coding	phospholipid sterol acyl transferase 1		phospholipid sterol acyl transferase 1;(source:Araport11)
AT1G03870.1	protein_coding	FASCICLIN-like arabinoogalactan 9	fasciclin-like arabinogalactan-protein 9 (Fla9). Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinoogalactan 9;(source:Araport11)
AT1G03940.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G03780.1	protein_coding	targeting protein for XKLP2	Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.	targeting protein for XKLP2;(source:Araport11)
AT1G04000.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G03860.1	protein_coding	prohibitin 2	prohibitin 2	prohibitin 2;(source:Araport11)
AT1G03930.1	protein_coding	dual specificity kinase 1	Phosphorylates serine, threonine, and tyrosine	dual specificity kinase 1;(source:Araport11)
AT1G03770.1	protein_coding	RING 1B	Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.	RING 1B;(source:Araport11)
AT1G03990.1	protein_coding	Long-chain fatty alcohol dehydrogenase family protein		Long-chain fatty alcohol dehydrogenase family protein;(source:Araport11)
AT1G03850.1	protein_coding	Glutaredoxin family protein	Encodes glutaredoxin ATGRXS13, required to facilitate Botrytis cinerea infection of Arabidopsis thaliana plants. Sylvain La Camera et al (2011, PMID:21756272) reported a third splice variant in addition to the two annotated in TAIR10. It is a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2 and suppress ORA59 promoter activity.	Glutaredoxin family protein;(source:Araport11)
AT1G03920.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT1G03980.1	protein_coding	phytochelatin synthase 2	Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1, explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).	phytochelatin synthase 2;(source:Araport11)
AT1G04030.1	protein_coding			eisosome protein;(source:Araport11)
AT1G03910.1	protein_coding		Encodes the Arabidopsis homolog of a conserved eukaryotic protein without known functional domains.  The protein that localizes to nuclear speckles and colocalizes with known splicing proteins.	cactus-binding carboxy-terminal, cactin;(source:Araport11)
AT1G03760.1	protein_coding	Prefoldin chaperone subunit family protein		Prefoldin chaperone subunit family protein;(source:Araport11)
AT1G03840.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G03750.1	protein_coding	switch 2		switch 2;(source:Araport11)
AT1G03830.1	protein_coding	guanylate-binding family protein		guanylate-binding family protein;(source:Araport11)
AT1G03900.1	protein_coding	non-intrinsic ABC protein 4	member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.	non-intrinsic ABC protein 4;(source:Araport11)
AT1G03820.1	protein_coding			E6-like protein;(source:Araport11)
AT1G03890.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT1G03970.1	protein_coding	G-box binding factor 4	encodes a basic leucine zipper G-box binding factor that can bind to G-box motifs only as heterodimers with GBF2 or GBF3. A single amino acid change can confer G-box binding as homodimers.	G-box binding factor 4;(source:Araport11)
AT1G04050.1	protein_coding	homolog of SU(var)3-9 1	Encodes SUVR1, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	histone-lysine N-methyltransferase SUVR2-like protein;(source:Araport11)
AT1G03880.1	protein_coding	cruciferin 2	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	cruciferin 2;(source:Araport11)
AT1G03810.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G04020.1	protein_coding	breast cancer associated RING 1	Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein-protein interactions. Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.	breast cancer associated RING 1;(source:Araport11)
AT1G03800.1	protein_coding	ERF domain protein 10	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-10). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	ERF domain protein 10;(source:Araport11)
AT1G03960.1	protein_coding	Calcium-binding EF hand family protein		Calcium-binding EF hand family protein;(source:Araport11)
AT1G09710.1	protein_coding	Homeodomain-like superfamily protein	Paralog of DRMY1 with unknown function.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G09720.1	protein_coding	Kinase interacting (KIP1-like) family protein	Member of NET domain family of actin binding proteins. Paralog of At3g22790 (NET2A).	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT1G09630.1	protein_coding	RAB GTPase 11C	Encodes a putative GTP-binding protein. Associates with organelles on a pathway from the Golgi to the plasma membrane in interphase. In dividing cells acts at the cell plate.	RAB GTPase 11C;(source:Araport11)
AT1G09730.1	protein_coding	Cysteine proteinases superfamily protein	Encodes a SUMO protease that positively regulates the transition to flowering in long and short days. Along with SPF2, its activity is required for fertility as asp1/spf2 double mutants have defects in gametogenesis and embroygenesis.	Cysteine proteinases superfamily protein;(source:Araport11)
AT1G09810.1	protein_coding	evolutionarily conserved C-terminal region 11		evolutionarily conserved C-terminal region 11;(source:Araport11)
AT1G09740.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT1G09900.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G09820.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G09750.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G09640.1	protein_coding	Translation elongation factor EF1B, gamma chain		Translation elongation factor EF1B, gamma chain;(source:Araport11)
AT1G09760.1	protein_coding	U2 small nuclear ribonucleoprotein A		U2 small nuclear ribonucleoprotein A;(source:Araport11)
AT1G09830.1	protein_coding	Glycinamide ribonucleotide (GAR) synthetase	glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamide	Glycinamide ribonucleotide (GAR) synthetase;(source:Araport11)
AT1G09660.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT1G09910.1	protein_coding	Rhamnogalacturonate lyase family protein		Rhamnogalacturonate lyase family protein;(source:Araport11)
AT1G09770.1	protein_coding	cell division cycle 5	Member of MYB3R- and R2R3- type MYB- encoding genes.  Essential for plant innate immunity.  Interacts with MOS4 and PRL1. The mRNA is cell-to-cell mobile.	cell division cycle 5;(source:Araport11)
AT1G09840.1	protein_coding	shaggy-like protein kinase 41		shaggy-like protein kinase 41;(source:Araport11)
AT1G09920.1	protein_coding	TRAF-type zinc finger-related		TRAF-type zinc finger-like protein;(source:Araport11)
AT1G09780.1	protein_coding	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent	Encodes a 2,3-biphosphoglycerate-independent phosphoglycerate mutase that is involved in pollen development and stomatal movement.	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent;(source:Araport11)
AT1G09850.1	protein_coding	xylem bark cysteine peptidase 3	Arabidopsis thaliana papain-like cysteine peptidase	xylem bark cysteine peptidase 3;(source:Araport11)
AT1G09680.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G09930.1	protein_coding	oligopeptide transporter 2	oligopeptide transporter	oligopeptide transporter 2;(source:Araport11)
AT1G09790.1	protein_coding	COBRA-like protein 6 precursor		COBRA-like protein 6 precursor;(source:Araport11)
AT1G09860.1	protein_coding	purine permease 16	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 16;(source:Araport11)
AT1G09690.1	protein_coding	Translation protein SH3-like family protein		Translation protein SH3-like family protein;(source:Araport11)
AT1G09940.1	protein_coding	Glutamyl-tRNA reductase family protein	Encodes glutamyl-tRNA reductase. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins	Glutamyl-tRNA reductase family protein;(source:Araport11)
AT1G09800.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT1G09870.1	protein_coding	histidine acid phosphatase family protein		histidine acid phosphatase family protein;(source:Araport11)
AT1G09700.1	protein_coding	dsRNA-binding domain-like superfamily protein	Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.	dsRNA-binding domain-like superfamily protein;(source:Araport11)
AT1G09950.1	protein_coding	RESPONSE TO ABA AND SALT 1		RESPONSE TO ABA AND SALT 1;(source:Araport11)
AT1G09880.1	protein_coding	Rhamnogalacturonate lyase family protein		Rhamnogalacturonate lyase family protein;(source:Araport11)
AT1G09960.1	protein_coding	sucrose transporter 4	low affinity (10mM) sucrose transporter in sieve elements (phloem)	sucrose transporter 4;(source:Araport11)
AT1G09890.1	protein_coding	Rhamnogalacturonate lyase family protein		Rhamnogalacturonate lyase family protein;(source:Araport11)
AT1G09970.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	RLK7 belongs to a leucine-rich repeat class of receptor-likekinase (LRR-RLKs). It is involved in the control of germination speed and the tolerance to oxidant stress. The mRNA is cell-to-cell mobile.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT1G09650.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G64040.1	protein_coding	type one serine/threonine protein phosphatase 3	Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.	type one serine/threonine protein phosphatase 3;(source:Araport11)
AT1G64130.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G64210.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G64110.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Target promoter of the male germline-specific transcription factor DUO1.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G64200.1	protein_coding	vacuolar H+-ATPase subunit E isoform 3		vacuolar H+-ATPase subunit E isoform 3;(source:Araport11)
AT1G64030.1	protein_coding	serpin 3		serpin 3;(source:Araport11)
AT1G64100.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G64190.1	protein_coding	6-phosphogluconate dehydrogenase family protein		6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT1G64240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-18 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G64020.1	protein_coding	Serine protease inhibitor (SERPIN) family protein		Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT1G64090.1	protein_coding	Reticulan like protein B3		Reticulan like protein B3;(source:Araport11)
AT1G64010.1	protein_coding	Serine protease inhibitor (SERPIN) family protein		Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT1G64180.1	protein_coding	intracellular protein transport protein USO1-related		intracellular protein transport protein USO1-like protein;(source:Araport11)
AT1G64080.1	protein_coding		Encodes a member of the MAKR (MEMBRANE-ASSOCIATED KINASE REGULATOR)  gene family. MAKRs have putative kinase interacting motifs and membrane localization signals. Known members include: AT5G26230 (MAKR1), AT1G64080 (MAKR2), AT2G37380 (MAKR3), AT2G39370 (MAKR4), AT5G52870 (MAKR5) and AT5G52900 (MAKR6).	membrane-associated kinase regulator;(source:Araport11)
AT1G64170.1	protein_coding	cation/H+ exchanger 16	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 16;(source:Araport11)
AT1G64000.1	protein_coding	WRKY DNA-binding protein 56	member of WRKY Transcription Factor; Group II-c	WRKY DNA-binding protein 56;(source:Araport11)
AT1G64070.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G64160.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein	Encodes a dirigent protein involved in the synthesis of (-)pinoresinol.   Dirigent proteins impart stereoselectivity on the phenoxy radical coupling reaction yielding optically active lignans from two molecules of coniferyl alcohol.	Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT1G63990.1	protein_coding	sporulation 11-2	Encodes AtSPO11-2, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA).  Required for meiotic recombination.  Plants homozygous for atspo11-2 exhibit a severe sterility phenotype.  Both male and female meiosis are severely disrupted in the atspo11-2 mutant, and this is associated with severe defects in synapsis during the first meiotic division and reduced meiotic recombination.  AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. Required for double-strand break induction.	sporulation 11-2;(source:Araport11)
AT1G64060.1	protein_coding	respiratory burst oxidase protein F	Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.	respiratory burst oxidase protein F;(source:Araport11)
AT1G63980.1	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT1G64050.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G63970.1	protein_coding	isoprenoid F	Encodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The protein's activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype.Homolog of E. coli IspF	isoprenoid F;(source:Araport11)
AT1G64220.1	protein_coding	translocase of outer membrane 7 kDa subunit 2		translocase of outer membrane 7 kDa subunit 2;(source:Araport11)
AT1G64150.1	protein_coding	Uncharacterized protein family (UPF0016)	PAM71 encodes an integral thylakoid membrane protein that is required for normal operation of oxygen-evolving complex (as evidenced by oxygen evolution rates) and for manganese incorporation. PAM71 belongs to a small gene family in Arabidopsis comprising five members. PAM71 is well conserved in the green lineage and shares homology with putative Ca2+/H+ exchangers from yeast (Saccharomyces cerevisiae) (GDT1) and human (Homo sapiens) (TMEM165).	Uncharacterized protein family (UPF0016);(source:Araport11)
AT1G64250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.2e-20 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G64140.1	protein_coding			WRKY transcription factor;(source:Araport11)
AT1G64230.1	protein_coding	ubiquitin-conjugating enzyme 28		ubiquitin-conjugating enzyme 28;(source:Araport11)
AT1G02890.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT1G02880.1	protein_coding	thiamin pyrophosphokinase1	Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.	thiamin pyrophosphokinase1;(source:Araport11)
AT1G02870.1	protein_coding			nucleolar-like protein;(source:Araport11)
AT1G02860.1	protein_coding	SPX (SYG1/Pho81/XPR1) domain-containing protein	Encodes a ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses and mediates degradation of PHT1s at plasma membranes.  Targeted by MIR827. Ubiquitinates PHT1;3, PHT1;2, PHT1;1/AtPT1 and PHT1;4/AtPT2.	SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT1G02850.1	protein_coding	beta glucosidase 11		beta glucosidase 11;(source:Araport11)
AT1G02930.1	protein_coding	glutathione S-transferase 6	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase 6;(source:Araport11)
AT1G02920.1	protein_coding	glutathione S-transferase 7	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase 7;(source:Araport11)
AT1G02990.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G02830.1	protein_coding	Ribosomal L22e protein family		Ribosomal L22e protein family;(source:Araport11)
AT1G02910.1	protein_coding	tetratricopeptide repeat (TPR)-containing protein	Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The  N-terminal sequence is rich in positive and hydroxylated amino acid residues.	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT1G02900.1	protein_coding	rapid alkalinization factor 1	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. Mediates  Ca2+-dependent signaling.	rapid alkalinization factor 1;(source:Araport11)
AT1G02820.1	protein_coding	Late embryogenesis abundant 3 (LEA3) family protein		Late embryogenesis abundant 3 (LEA3) family protein;(source:Araport11)
AT1G02720.1	protein_coding	galacturonosyltransferase 5	Encodes a protein with putative galacturonosyltransferase activity.	galacturonosyltransferase 5;(source:Araport11)
AT1G02810.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT1G02980.1	protein_coding	cullin 2	encodes an Arabidopsis cullin	cullin 2;(source:Araport11)
AT1G02960.1	protein_coding			kinetochore protein;(source:Araport11)
AT1G02950.1	protein_coding	glutathione S-transferase F4	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase F4;(source:Araport11)
AT1G02840.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	SR34/SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G02940.1	protein_coding	glutathione S-transferase (class phi) 5	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase (class phi) 5;(source:Araport11)
AT1G02970.1	protein_coding	WEE1 kinase homolog	Protein kinase that negatively regulates the entry into mitosis.	WEE1-like kinase;(source:Araport11)
AT1G53770.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G53670.1	protein_coding	methionine sulfoxide reductase B 1		methionine sulfoxide reductase B 1;(source:Araport11)
AT1G53660.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	Nucleotide/sugar transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G53730.1	protein_coding	STRUBBELIG-receptor family 6		STRUBBELIG-receptor family 6;(source:Araport11)
AT1G53720.1	protein_coding	cyclophilin 59	Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis–  trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged  amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR  proteins in nuclear speckles.	cyclophilin 59;(source:Araport11)
AT1G53680.1	protein_coding	glutathione S-transferase TAU 28	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 28;(source:Araport11)
AT1G53710.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT1G53700.1	protein_coding	WAG 1	The WAG1 and its homolog, WAG2 each encodes a protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.	WAG 1;(source:Araport11)
AT1G53690.1	protein_coding	DNA directed RNA polymerase, 7 kDa subunit	Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.	DNA directed RNA polymerase, 7 kDa subunit;(source:Araport11)
AT1G53470.1	protein_coding	mechanosensitive channel of small conductance-like 4		mechanosensitive channel of small conductance-like 4;(source:Araport11)
AT1G07620.1	protein_coding	GTP-binding protein Obg/CgtA		GTP-binding protein Obg/CgtA;(source:Araport11)
AT1G07590.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G07500.1	protein_coding		SMR5 is a member of the SIAMESE-RELATED Cyclin-Dependent Kinase Inhibitor family. It is induced by ROS/oxidative stress.	hypothetical protein;(source:Araport11)
AT1G07570.1	protein_coding	Protein kinase superfamily protein	Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues	Protein kinase superfamily protein;(source:Araport11)
AT1G07490.1	protein_coding	ROTUNDIFOLIA like 3		ROTUNDIFOLIA like 3;(source:Araport11)
AT1G07560.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G07480.1	protein_coding	Transcription factor IIA, alpha/beta subunit		Transcription factor IIA, alpha/beta subunit;(source:Araport11)
AT1G07420.1	protein_coding	sterol 4-alpha-methyl-oxidase 2-1	Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA. The sterol 4alpha-methyl oxidase2 family proteins SMO2-1 and SMO2-2 function partially through effects on auxin accumulation, auxin response and PIN1 expression to regulate embryogenesis in Arabidopsis.	sterol 4-alpha-methyl-oxidase 2-1;(source:Araport11)
AT1G07550.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G07410.1	protein_coding	RAB GTPase homolog A2B		RAB GTPase homolog A2B;(source:Araport11)
AT1G07400.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G07310.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G07540.1	protein_coding	TRF-like 2	Arabidopsis thaliana telomere-binding protein, putative (At1g07540)	TRF-like 2;(source:Araport11)
AT1G07390.1	protein_coding	receptor like protein 1		receptor like protein 1;(source:Araport11)
AT1G07300.1	protein_coding	josephin protein-related		josephin protein-like protein;(source:Araport11)
AT1G07530.1	protein_coding	SCARECROW-like 14	Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm.	SCARECROW-like 14;(source:Araport11)
AT1G07470.1	protein_coding	Transcription factor IIA, alpha/beta subunit		Transcription factor IIA, alpha/beta subunit;(source:Araport11)
AT1G07520.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT1G07460.1	protein_coding	Concanavalin A-like lectin family protein		Concanavalin A-like lectin family protein;(source:Araport11)
AT1G07380.1	protein_coding	Neutral/alkaline non-lysosomal ceramidase	Encodes a neutral ceramidase that is involved in sphingolipid homeostasis and responses to oxidative stress.	Neutral/alkaline non-lysosomal ceramidase;(source:Araport11)
AT1G07290.1	protein_coding	golgi nucleotide sugar transporter 2	Encodes a GDP-mannose transporter.	golgi nucleotide sugar transporter 2;(source:Araport11)
AT1G07510.1	protein_coding	FTSH protease 10	encodes an FtsH protease that is localized to the mitochondrion	FTSH protease 10;(source:Araport11)
AT1G07450.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G07370.1	protein_coding	proliferating cellular nuclear antigen 1	Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation. May be sumoylated.	proliferating cellular nuclear antigen 1;(source:Araport11)
AT1G07280.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G07440.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G07360.1	protein_coding	CCCH-type zinc fingerfamily protein with RNA-binding domain	Encodes MAC5A, a component of the MOS4-associated complex (MAC) that contributes to snc1- mediated autoimmunity. MAC is a highly conserved nuclear protein complex associated with the spliceosome. Homologues include AT1G07360 (MAC5A), AT2G29580 (MAC5B) and AT5G07060 (MAC5C).	CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT1G07430.1	protein_coding	highly ABA-induced PP2C gene 2	Encodes a member of the group A protein phosphatase 2C (PP2C) family that is responsible for negatively regulating seed dormancy.	highly ABA-induced PP2C protein 2;(source:Araport11)
AT1G07350.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a serine/arginine rich-like protein, SR45a. Involved in the regulation of stress-responsive alternative splicing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G07340.1	protein_coding	sugar transporter 2		sugar transporter 2;(source:Araport11)
AT1G07320.1	protein_coding	ribosomal protein L4	encodes a plastid ribosomal protein L4	ribosomal protein L4;(source:Araport11)
AT1G07330.1	protein_coding			dentin sialophosphoprotein;(source:Araport11)
AT1G75240.1	protein_coding	homeobox protein 33	Encodes a zinc finger-homeodomain transcription factor ZHD5.  Nuclear import and DNA binding of the ZHD5 transcription factor is modulated by a competitive peptide inhibitor MIF1 (AT1G74660).	homeobox protein 33;(source:Araport11)
AT1G75230.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT1G75220.1	protein_coding	Major facilitator superfamily protein	Encodes a vacuolar glucose exporter that is induced in response to factors that activate vacuolar glucose pools like darkness, heat stress and wounding and repressed during conditions that trigger glucose accumulation in the vacuole like cold stress and external sugar supply.	Major facilitator superfamily protein;(source:Araport11)
AT1G75150.1	protein_coding			DNA ligase-like protein;(source:Araport11)
AT1G75210.1	protein_coding	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase		HAD-superfamily hydrolase, subfamily IG, 5-nucleotidase;(source:Araport11)
AT1G75200.1	protein_coding	flavodoxin family protein / radical SAM domain-containing protein		flavodoxin family protein / radical SAM domain-containing protein;(source:Araport11)
AT1G75140.1	protein_coding			membrane protein;(source:Araport11)
AT1G75270.1	protein_coding	dehydroascorbate reductase 2		dehydroascorbate reductase 2;(source:Araport11)
AT1G75300.1	protein_coding	NmrA-like negative transcriptional regulator family protein	encodes a protein whose sequence is similar to an isoflavone reductase	NmrA-like negative transcriptional regulator family protein;(source:Araport11)
AT1G75260.1	protein_coding	oxidoreductases, acting on NADH or NADPH		oxidoreductases, acting on NADH or NADPH;(source:Araport11)
AT1G75190.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G75250.1	protein_coding	RAD-like 6		RAD-like 6;(source:Araport11)
AT1G75180.1	protein_coding	Erythronate-4-phosphate dehydrogenase family protein		Erythronate-4-phosphate dehydrogenase family protein;(source:Araport11)
AT1G75280.1	protein_coding	NmrA-like negative transcriptional regulator family protein	isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress. The mRNA is cell-to-cell mobile.	NmrA-like negative transcriptional regulator family protein;(source:Araport11)
AT1G75290.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	encodes a protein whose sequence is similar to an isoflavone reductase	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G75170.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G75160.1	protein_coding	Protein of unknown function (DUF620)		DUF620 family protein (DUF620);(source:Araport11)
AT1G77000.1	protein_coding	RNI-like superfamily protein	AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1.  Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain.  Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis.  AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. AtSKP2b may also be involved in the degradation of KRP1/ICK1, a CDK inhibitor.	RNI-like superfamily protein;(source:Araport11)
AT1G77030.1	protein_coding	hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases		putative DEAD-box ATP-dependent RNA helicase 29;(source:Araport11)
AT1G76940.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G77010.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G76920.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G77020.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G76930.1	protein_coding	extensin 4	Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins.  The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.	extensin 4;(source:Araport11)
AT1G77060.1	protein_coding	Phosphoenolpyruvate carboxylase family protein		Phosphoenolpyruvate carboxylase family protein;(source:Araport11)
AT1G76950.1	protein_coding	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain		Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT1G76960.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G77090.1	protein_coding	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein		thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein);(source:Araport11)
AT1G76970.1	protein_coding	Target of Myb protein 1		Target of Myb protein 1;(source:Araport11)
AT1G77100.1	protein_coding	Peroxidase superfamily protein		peroxidase superfamily protein;(source:Araport11)
AT1G76980.1	protein_coding			patatin-like phospholipase domain protein;(source:Araport11)
AT1G77110.1	protein_coding	Auxin efflux carrier family protein	Rate-limiting factor in saturable efflux of auxins. PINs are directly involved of in catalyzing cellular auxin efflux.	Auxin efflux carrier family protein;(source:Araport11)
AT1G76990.1	protein_coding	ACT domain repeat 3		ACT domain repeat 3;(source:Araport11)
AT1G76910.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G01460.1	protein_coding	Phosphatidylinositol-4-phosphate 5-kinase, core	Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A.	Phosphatidylinositol-4-phosphate 5-kinase, core;(source:Araport11)
AT1G01560.1	protein_coding	MAP kinase 11	Member of MAP Kinase family. Flg22-induced activation is blocked by AvrRpt2.	MAP kinase 11;(source:Araport11)
AT1G01470.1	protein_coding	Late embryogenesis abundant protein	Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against desiccation.	Late embryogenesis abundant protein;(source:Araport11)
AT1G01580.1	protein_coding	ferric reduction oxidase 2	Encodes the low-iron-inducible ferric chelate reductase responsible for reduction of iron at the root surface.  It is likely to be the major Fe(III) chelate reductase in Arabidopsis iron metabolism.  Coordinately regulated with IRT1, the major transporter responsible for high-affinity iron uptake from the soil, at both transcriptional and posttranscriptional levels. Steady state mRNA levels are regulated by several metals.  Its transcription is regulated by FIT1.	ferric reduction oxidase 2;(source:Araport11)
AT1G01450.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G01480.1	protein_coding	1-amino-cyclopropane-1-carboxylate synthase 2	a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family,  isolated from a flower-specific cDNA library.	1-amino-cyclopropane-1-carboxylate synthase 2;(source:Araport11)
AT1G01590.1	protein_coding	ferric reduction oxidase 1	Encodes a ferric-chelate reductase that is expressed at extremely low levels in Fe deficiency-induced seedlings.	ferric reduction oxidase 1;(source:Araport11)
AT1G01600.1	protein_coding	cytochrome P450, family 86, subfamily A, polypeptide 4	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers.	cytochrome P450, family 86, subfamily A, polypeptide 4;(source:Araport11)
AT1G01510.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes a homolog of human CtBP.  Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction. It has been shown to localize to cytosolic stress granules and is involved in their formation.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G01610.1	protein_coding	glycerol-3-phosphate acyltransferase 4	bifunctional sn-glycerol-3-phosphate 2-O-acyltransferase/phosphatase. Involved in cutin assembly and is functionally redundant with GPAT8.	glycerol-3-phosphate acyltransferase 4;(source:Araport11)
AT1G01530.1	protein_coding	AGAMOUS-like 28		AGAMOUS-like 28;(source:Araport11)
AT1G01620.1	protein_coding	plasma membrane intrinsic protein 1C	a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.	plasma membrane intrinsic protein 1C;(source:Araport11)
AT1G01540.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G01500.1	protein_coding	Erythronate-4-phosphate dehydrogenase family protein		Erythronate-4-phosphate dehydrogenase family protein;(source:Araport11)
AT1G01550.1	protein_coding	Protein of unknown function (DUF793)	Encodes a protein  with no functionally characterized domains that to prevent the synthesis of a novel substance that moves from the root to the shoot, where it modifies shoot growth by interfering with auxin signaling.  Synthesis and delivery of this substance requires neither phloem nor endodermis.	BPS1-like protein (DUF793);(source:Araport11)
AT1G01520.1	protein_coding	Homeodomain-like superfamily protein	RVE3 is one of eleven homologous MYB-like transcription factors in Arabidopsis and a member of the RVE8 clade. Plays a minor role in clock regulation.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G01570.1	protein_coding	Protein of unknown function (DUF604)		transferring glycosyl group transferase (DUF604);(source:Araport11)
AT1G01490.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G01970.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G01880.1	protein_coding	5'-3' exonuclease family protein	Encodes one of two GEN1 homologs in Arabidopsis.  It is a member of the class IV Rad2/XPG family of nucleases that processes Holliday junctions in a manner analogous to the HJ resolvases of phages, archaea, and bacteria.	5-3 exonuclease family protein;(source:Araport11)
AT1G01980.1	protein_coding	FAD-binding Berberine family protein	Encodes an oligogalacturonide oxidase that inactivates the elicitor-active oligogalacturonides (OGs).	FAD-binding Berberine family protein;(source:Araport11)
AT1G01900.1	protein_coding	subtilase family protein	Encodes AtSBT1.1, a subtilisin-like serine protease.  Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.	subtilase family protein;(source:Araport11)
AT1G01990.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G01910.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G02000.1	protein_coding	UDP-D-glucuronate 4-epimerase 2	UDP-D-glucuronate 4-epimerase The mRNA is cell-to-cell mobile.	UDP-D-glucuronate 4-epimerase 2;(source:Araport11)
AT1G01920.1	protein_coding	SET domain-containing protein		SET domain-containing protein;(source:Araport11)
AT1G01930.1	protein_coding	zinc finger protein-related		zinc finger protein-like protein;(source:Araport11)
AT1G01940.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT1G01950.1	protein_coding	armadillo repeat kinesin 2	Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.	armadillo repeat kinesin 2;(source:Araport11)
AT1G01960.1	protein_coding	SEC7-like guanine nucleotide exchange family protein	Encodes one of the functionally redundant ARF guanine-nucleotide exchange factors (ARF-GEFs). Functions as regulators of post-Golgi trafficking.	SEC7-like guanine nucleotide exchange family protein;(source:Araport11)
AT1G08550.1	protein_coding	non-photochemical quenching 1	Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex	non-photochemical quenching 1;(source:Araport11)
AT1G08720.1	protein_coding	Protein kinase superfamily protein	enhanced disease resistance 1 (EDR1) confers resistance to powdery mildew disease caused by the fungus Erysiphe cichoracearum The mRNA is cell-to-cell mobile.	Protein kinase superfamily protein;(source:Araport11)
AT1G08650.1	protein_coding	phosphoenolpyruvate carboxylase kinase 1	Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. The mRNA is cell-to-cell mobile.	phosphoenolpyruvate carboxylase kinase 1;(source:Araport11)
AT1G08580.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G08790.1	protein_coding	Protein of unknown function (DUF1685)		1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1, putative (DUF1685);(source:Araport11)
AT1G08730.1	protein_coding	Myosin family protein with Dil domain	Encodes a class XI myosin that is involved in organelle motility, actin organization, and optimal growth of pollen tubes.	Myosin family protein with Dil domain-containing protein;(source:Araport11)
AT1G08660.1	protein_coding	MALE GAMETOPHYTE DEFECTIVE 2	Encodes a sialyltransferase-like protein that is localized to the Golgi apparatus and is involved in pollen tube growth and pollen germination.	MALE GAMETOPHYTE DEFECTIVE 2;(source:Araport11)
AT1G08590.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Encodes one of the two putative eLRR kinase closely related to PXY (At1g08590/PXL1 and At4g28650/PXL2). Insertion mutants in either pxl1 or pxl2 do not exhibit an obvious phenotype in the stem; double-mutant combinations of a Col allele, of pxy (pxy-3) with pxl1 and pxl2, generate a more severe vascular phenotype than pxy-3 alone, suggesting that these genes act synergistically with PXY in regulating vascular-tissue development in the stem.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT1G21040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G08670.1	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT1G08600.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	The Arabidopsis ATRX harbours a N-terminal ADD domain and a C-terminal helicase domain and is devoid of the large central region involved in DAXX interaction in mammals. Arabidopsis ATRX mutant alleles are viable, but with reduced fertility. Their combination with mutants for the H3.3 chaperone HIRA impairs plant survival. ATRX loss affects cellular histone H3.3 pools and modulates the H3.1/H3.3 balance. Notably, at a genome-wide scale, loss of ATRX leads to a reduced H3.3 level at genes characterized by elevated H3.3 occupancy and high expression, including the 45S ribosomal DNA (45S rDNA) loci. Indeed, expression of specific 45S rDNA sequence variants is altered by ATRX loss (DOI:10.1105/tpc.16.00877)	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G08810.1	protein_coding	myb domain protein 60	putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.	myb domain protein 60;(source:Araport11)
AT1G08740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1);(source:TAIR10)
AT1G08680.1	protein_coding	ARF GAP-like zinc finger-containing protein ZIGA4	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.	ARF GAP-like zinc finger-containing protein ZIGA4;(source:Araport11)
AT1G08610.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G08820.1	protein_coding	vamp/synaptobrevin-associated protein 27-2	Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.	vamp/synaptobrevin-associated protein 27-2;(source:Araport11)
AT1G08750.1	protein_coding	Peptidase C13 family	GPI8/PIG-K homolog involved in stomata development. Loss of function alleles do not transmit through the pollen.	Peptidase C13 family;(source:Araport11)
AT1G08830.1	protein_coding	copper/zinc superoxide dismutase 1	Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals.  Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress. Activation of CSD1 in the cytoplasm involves both a CCS-dependent and -independent pathway.	copper/zinc superoxide dismutase 1;(source:Araport11)
AT1G08760.1	protein_coding	Plant protein of unknown function (DUF936)	CORD2 is a member of a novel and plant specific family of microtubule associated proteins. CORD1 binds microtubules via a conserved protein domain shared among family members. CORD functions may overlap;cord1 / cord2 mutants have defects in secondary cell wall pit morphology.	GPI-anchored adhesin-like protein, putative (DUF936);(source:Araport11)
AT1G08770.1	protein_coding	prenylated RAB acceptor 1.E		prenylated RAB acceptor 1.E;(source:Araport11)
AT1G08560.1	protein_coding	syntaxin  of plants 111	member of SYP11 syntaxin Gene Family	syntaxin of plants 111;(source:Araport11)
AT1G08570.1	protein_coding	atypical CYS  HIS rich thioredoxin 4	Encodes a member of the thioredoxin family protein.  Located in the chloroplast.  Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate   dehydrogenase. The mRNA is cell-to-cell mobile.	atypical CYS HIS rich thioredoxin 4;(source:Araport11)
AT1G08620.1	protein_coding	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein		Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11)
AT1G08700.1	protein_coding	Presenilin-1	Encodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation. Located in intracellular membrane compartments.	Presenilin-1;(source:Araport11)
AT1G08630.1	protein_coding	threonine aldolase 1	Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.	threonine aldolase 1;(source:Araport11)
AT1G08780.1	protein_coding	ABI3-interacting protein 3		ABI3-interacting protein 3;(source:Araport11)
AT1G08640.1	protein_coding	Chloroplast J-like domain 1	Encodes a choloroplast membrane protein CJD1 (Chloroplast J-like Domain 1). Predicted to contain a transit peptide, three transmembrane domains and an N-terminal J-like domain. Influences fatty acid composition of chloroplast lipids.	Chloroplast J-like domain 1;(source:Araport11)
AT1G08710.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G80830.1	protein_coding	natural resistance-associated macrophage protein 1	Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants.	natural resistance-associated macrophage protein 1;(source:Araport11)
AT1G80700.1	protein_coding			stress response NST1-like protein;(source:Araport11)
AT1G80840.1	protein_coding	WRKY DNA-binding protein 40	Pathogen-induced transcription factor. Binds W-box sequences  in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. The mRNA is cell-to-cell mobile.	WRKY DNA-binding protein 40;(source:Araport11)
AT1G80780.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Deadenylase.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G80850.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT1G80800.1	pseudogene			pseudogene of Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT1G80860.1	protein_coding	phospholipid N-methyltransferase	Encodes a single-copy phospholipid N-methyltransferase, involved in phosphatidylcholine biosynthesis. Has specific activity towards phosphatidylmonomethylethanolamine and phosphatidyldimethylethanolamine, but not phosphatidylethanolamine.	phospholipid N-methyltransferase;(source:Araport11)
AT1G80810.1	protein_coding	Tudor/PWWP/MBT superfamily protein	One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT1G80970.1	protein_coding	XH domain-containing protein		XH domain-containing protein;(source:Araport11)
AT1G80990.1	protein_coding	XH domain-containing protein		XH domain-containing protein;(source:Araport11)
AT1G80660.1	protein_coding	H(+)-ATPase 9		H[+]-ATPase 9;(source:Araport11)
AT1G80670.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G80680.1	protein_coding	SUPPRESSOR OF AUXIN RESISTANCE 3	Mutant has early-flowering phenotype, encodes a putative nucleoporin. Required for the activation of downstream defense pathways by the snc1 mutation. Involved in basal resistance against bacterial pathogens.	SUPPRESSOR OF AUXIN RESISTANCE 3;(source:Araport11)
AT1G80870.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G80880.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G80690.1	protein_coding	PPPDE putative thiol peptidase family protein		PPPDE putative thiol peptidase family protein;(source:Araport11)
AT1G80890.1	protein_coding			GAG1At protein;(source:Araport11)
AT1G80710.1	protein_coding	DROUGHT SENSITIVE 1	Encodes a WD­40 repeat family protein containing a DWD (DDB1 binding WD­40) motif. Mutant analysis demonstrates that DRS1 promotes tolerance to drought stress, possibly mediated by ABA, and suggests involvement of DDB1­ Cul4–mediated protein degradation in drought response.	DROUGHT SENSITIVE 1;(source:Araport11)
AT1G80900.1	protein_coding	magnesium transporter 1	Transmembrane magnesium transporter. One of nine family members.	magnesium transporter 1;(source:Araport11)
AT1G80720.1	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT1G80730.1	protein_coding	zinc-finger protein 1	Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation.	zinc-finger protein 1;(source:Araport11)
AT1G80910.1	protein_coding	Protein of unknown function (DUF1712)		vacuolar fusion CCZ1-like protein (DUF1712);(source:Araport11)
AT1G80740.1	protein_coding	chromomethylase 1	ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.	chromomethylase 1;(source:Araport11)
AT1G80920.1	protein_coding	Chaperone DnaJ-domain superfamily protein	A nuclear encoded soluble protein found in the chloroplast stroma. Negatively regulated by light and has rapid turnover in darkness.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G80930.1	protein_coding	MIF4G domain-containing protein / MA3 domain-containing protein		MIF4G domain-containing protein / MA3 domain-containing protein;(source:Araport11)
AT1G80940.1	protein_coding			Snf1 kinase interactor-like protein;(source:Araport11)
AT1G80950.1	protein_coding	Phospholipid/glycerol acyltransferase family protein	Encodes an acyl-CoA: lysophosphatidylethanolamine acyltransferase with 16:0-CoA being the best acyl donor. Mutations adversely affect the growth of plants and result in decreased lipid content in roots and seeds.	Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT1G80960.1	protein_coding	F-box and Leucine Rich Repeat domains containing protein		F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G80750.1	protein_coding	Ribosomal protein L30/L7 family protein	Cytosolic ribosomal 60S subunit protein.	Ribosomal protein L30/L7 family protein;(source:Araport11)
AT1G80760.1	protein_coding	NOD26-like intrinsic protein 6;1	Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.	NOD26-like intrinsic protein 6;(source:Araport11)
AT1G80770.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G80820.1	protein_coding	cinnamoyl coa reductase	Encodes an cinnamoyl CoA reductase isoform.  Involved in lignin biosynthesis.	cinnamoyl coa reductase;(source:Araport11)
AT1G80980.1	protein_coding			stress response NST1-like protein;(source:Araport11)
AT1G60860.1	protein_coding	ARF-GAP domain 2	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.	ARF-GAP domain 2;(source:Araport11)
AT1G60850.1	protein_coding	DNA-directed RNA polymerase family protein		DNA-directed RNA polymerase family protein;(source:Araport11)
AT1G60810.1	protein_coding	ATP-citrate lyase A-2	One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase	ATP-citrate lyase A-2;(source:Araport11)
AT1G59790.1	protein_coding	Cullin family protein		Cullin family protein;(source:Araport11)
AT1G59740.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G59840.1	protein_coding	cofactor assembly of complex C		cofactor assembly of complex C;(source:Araport11)
AT1G59850.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G59940.1	protein_coding	response regulator 3	Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.	response regulator 3;(source:Araport11)
AT1G59780.1	protein_coding	NB-ARC domain-containing disease resistance protein		NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT1G59860.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G59950.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G59870.1	protein_coding	ABC-2 and Plant PDR ABC-type transporter family protein	ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at  infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid–dependent manner. Required for mlo resistance.  Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance. The mRNA is cell-to-cell mobile.	ABC-2 and Plant PDR ABC-type transporter family protein;(source:Araport11)
AT1G59960.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G59800.1	protein_coding	Cullin family protein		Cullin family protein;(source:Araport11)
AT1G59810.1	protein_coding	AGAMOUS-like 50	AGL50 MADS box gene.	AGAMOUS-like 50;(source:Araport11)
AT1G59890.1	protein_coding	SIN3-like 5		SIN3-like 5;(source:Araport11)
AT1G59820.1	protein_coding	aminophospholipid ATPase 3	Encodes a phospholipid translocase. Involved in secretory vesicle formation from trans-Golgi in peripheral columella cells at the root tip. Mutants have short primary roots and grow slower. The mRNA is cell-to-cell mobile.	aminophospholipid ATPase 3;(source:Araport11)
AT1G59900.1	protein_coding	pyruvate dehydrogenase complex E1 alpha subunit	encodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC) The mRNA is cell-to-cell mobile.	pyruvate dehydrogenase complex E1 alpha subunit;(source:Araport11)
AT1G59730.1	protein_coding	thioredoxin H-type 7		thioredoxin H-type 7;(source:Araport11)
AT1G59830.1	protein_coding	protein phosphatase 2A-2	Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].	protein phosphatase 2A-2;(source:Araport11)
AT1G59910.1	protein_coding	Actin-binding FH2 (formin homology 2) family protein	Member of family of cytoskeletal-interacting proteins which have the ability to stimulate actin nucleation and barbed-end capping through the combined activity of conserved formin-homology 1 (FH1) and formin-homology 2 (FH2) domains.	Actin-binding FH2 (formin homology 2) family protein;(source:Araport11)
AT1G59920.1	protein_coding	MADS-box family protein		MADS-box family protein;(source:Araport11)
AT1G59750.1	protein_coding	auxin response factor 1	Encodes a member of the auxin response factor family. ARFs bind to the cis element 5'-TGTCTC-3' ARFs mediate changes in gene expression in response to auxin. ARF's form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence.ARF1:LUC and 3xHA:ARF1 proteins have a half-life of ~3-4 hours and their degradation is reduced by proteasome inhibitors. 3xHA:ARF1 degradation is not affected by a pre-treatment with IAA. A nuclear-targeted fusion protein containing the middle region of ARF1 linked to LUC:NLS has a similar half-life to the full-length ARF1:LUC construct. The degradation of 3xHA:ARF1 is not affected in an axr6-3 mutant grown at room temperature, although the degradation of AXR2/IAA7 is slowed under these conditions.	auxin response factor 1;(source:Araport11)
AT1G59930.1	protein_coding	MADS-box family protein	Encodes a maternally expressed imprinted gene.	MADS-box family protein;(source:Araport11)
AT1G59760.1	protein_coding	RNA helicase, ATP-dependent, SK12/DOB1 protein	Encodes MTR4, a putative RNA helicase and exosome co-factor.  Required for proper rRNA biogenesis and development.	RNA helicase, ATP-dependent, SK12/DOB1 protein;(source:Araport11)
AT1G59770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 5.2e-49 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G51080.1	protein_coding			golgin family A protein;(source:Araport11)
AT1G51070.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	bHLH115 is a basic helix loop helix protein of the IVc subgroup that plays a role in iron homeostasis. It interacts with related family members and targets PYE and other genes involved in response to Fe.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G51060.1	protein_coding	histone H2A 10	Encodes HTA10, a histone H2A protein. The mRNA is cell-to-cell mobile.	histone H2A 10;(source:Araport11)
AT1G51140.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix-loop-helix-type transcription factor involved in photoperiodism flowering. Binds to the E-box cis-element in the CONSTANS (CO) promoter to regulate flowering. Interacts with CFL1 and along with CFLAP2 negatively regulates cuticle development.  Binds to the potassium channel gene KAT1 as a dimer. The DNA-binding capacity is inhibited in response to ABA through phosphorylation-dependent monomerization.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G51090.1	protein_coding	Heavy metal transport/detoxification superfamily protein 	Heavy metal associated domain containing protein involved in plant immunity.Mutants show an increase in root length under NO stress and reduction in root length under H2O2 stress conditions. Mutants show increases in defense responses to pathogens including hypersensitive lesions, increased resistance and induction of SAR genes.	Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G51130.1	protein_coding	Nse4, component of Smc5/6 DNA repair complex	&#948;-kleisin component of the SMC5/6 complex, possibly involved in synaptonemal complex formation.	Nse4, component of Smc5/6 DNA repair complex;(source:Araport11)
AT1G51110.1	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT1G51120.1	protein_coding	AP2/B3 transcription factor family protein		AP2/B3 transcription factor family protein;(source:Araport11)
AT1G51040.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G51100.1	protein_coding			potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel protein;(source:Araport11)
AT1G51030.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G34210.1	protein_coding	somatic embryogenesis receptor-like kinase 2	Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development  controlling male gametophyte production. The mRNA is cell-to-cell mobile.	somatic embryogenesis receptor-like kinase 2;(source:Araport11)
AT1G34270.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT1G34260.1	protein_coding	FORMS APLOID AND BINUCLEATE CELLS 1A	Encodes a protein that is predicted to act as a phosphatidylinositol-3P 5-kinase, but, because it lacks a FYVE domain, it is unlikely to be efficiently targeted to membranes containing the porposed phosphatidylinositol-3P substrate. Therefore, its molecular function remains unknown. The mRNA is cell-to-cell mobile.	FORMS APLOID AND BINUCLEATE CELLS 1A;(source:Araport11)
AT1G34240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 5.6e-48 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G34350.1	protein_coding		Encodes a putative transmembrane protein that has been localized around the nucleus and is involved in pollen germination and pollen tube growth.	Tmem18;(source:Araport11)
AT1G34320.1	protein_coding	Protein of unknown function (DUF668)		Ikzf5 (DUF668);(source:Araport11)
AT1G34310.1	protein_coding	auxin response factor 12		auxin response factor 12;(source:Araport11)
AT1G34220.1	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT1G34300.1	protein_coding	lectin protein kinase family protein		lectin protein kinase family protein;(source:Araport11)
AT1G34290.1	protein_coding	receptor like protein 5		receptor like protein 5;(source:Araport11)
AT1G62720.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein	Encodes a PPR protein gene that localizes to the mitochondrion and is required for   seed germination.	Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G62730.1	protein_coding	Terpenoid synthases superfamily protein		Terpenoid synthases superfamily protein;(source:Araport11)
AT1G62830.1	protein_coding	LSD1-like 1	Encodes a homolog of human  Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA.  Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.	LSD1-like 1;(source:Araport11)
AT1G62670.1	protein_coding	rna processing factor 2	Encodes a pentatricopeptide  repeat protein required for 5' end processing of nad9 and cox3 mRNAs in mitochondria.	rna processing factor 2;(source:Araport11)
AT1G62740.1	protein_coding	stress-inducible protein, putative	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones. The mRNA is cell-to-cell mobile.	stress-inducible protein;(source:Araport11)
AT1G62840.1	protein_coding	Protein of unknown function (DUF1442)		ankyrin repeat/KH domain protein (DUF1442);(source:Araport11)
AT1G62680.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G62750.1	protein_coding	Translation elongation factor EFG/EF2 protein	Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants.	Translation elongation factor EFG/EF2 protein;(source:Araport11)
AT1G62690.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G62700.1	protein_coding	Arabidopsis NAC domain containing protein 26	Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.	NAC (No apical meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G62770.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein	PMEI9 pectin methyleseterase inhibitor. Expressed in many plant tissues.	Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G62710.1	protein_coding	beta vacuolar processing enzyme	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.	beta vacuolar processing enzyme;(source:Araport11)
AT1G62780.1	protein_coding			dimethylallyl, adenosine tRNA methylthiotransferase;(source:Araport11)
AT1G62820.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT1G62790.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G62800.1	protein_coding	aspartate aminotransferase 4	Encodes aspartate aminotransferase (Asp4).	aspartate aminotransferase 4;(source:Araport11)
AT1G62810.1	protein_coding	Copper amine oxidase family protein	Encodes COPPER AMINE OXIDASE1 (CuAO1). Contributes to abscisic acid- and polyamine-induced nitric oxide biosynthesis and abscisic acid signal transduction.	Copper amine oxidase family protein;(source:Araport11)
AT1G71110.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G71190.1	protein_coding	senescence associated gene 18	Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function.  Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.	senescence associated gene 18;(source:Araport11)
AT1G71120.1	protein_coding	GDSL-motif lipase/hydrolase 6	Contains lipase signature motif and GDSL domain.	GDSL-motif lipase/hydrolase 6;(source:Araport11)
AT1G71100.1	protein_coding	Ribose 5-phosphate isomerase, type A protein	Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis.	Ribose 5-phosphate isomerase, type A protein;(source:Araport11)
AT1G71130.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G71030.1	protein_coding	MYB-like 2	Encodes a putative myb family transcription factor.  In contrast to most other myb-like proteins its myb domain consists of a single repeat.  A proline-rich region potentially involved in transactivation is found in the C-terminal part of the protein.   Its transcript accumulates mainly in leaves.	MYB-like 2;(source:Araport11)
AT1G71140.1	protein_coding	MATE efflux family protein	MATE transporter that can export the antibiotic norfloxacin.	MATE efflux family protein;(source:Araport11)
AT1G71150.1	protein_coding			cyclin-D1-binding protein;(source:Araport11)
AT1G71040.1	protein_coding	Cupredoxin superfamily protein	Encodes LPR2.  Function together with LPR1 (AT1G23010) and a P5-type ATPase (At5g23630/PDR2) in a common pathway that adjusts root meristem activity to Pi (inorganic phosphate) availability.	Cupredoxin superfamily protein;(source:Araport11)
AT1G71160.1	protein_coding	3-ketoacyl-CoA synthase 7	Encodes KCS7, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 7;(source:Araport11)
AT1G71050.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G71170.1	protein_coding	6-phosphogluconate dehydrogenase family protein		6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT1G71060.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G71180.1	protein_coding	6-phosphogluconate dehydrogenase family protein		6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT1G71070.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G71080.1	protein_coding	RNA polymerase II transcription elongation factor		RNA polymerase II transcription elongation factor;(source:Araport11)
AT1G71090.1	protein_coding	Auxin efflux carrier family protein		Auxin efflux carrier family protein;(source:Araport11)
AT1G07880.1	protein_coding	Protein kinase superfamily protein	member of MAP Kinase	Protein kinase superfamily protein;(source:Araport11)
AT1G07710.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT1G07790.1	protein_coding	Histone superfamily protein	Encodes a histone 2B (H2B) protein.	Histone superfamily protein;(source:Araport11)
AT1G07860.1	protein_coding			Serine/Threonine-kinase RLCKVII protein;(source:Araport11)
AT1G07700.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT1G07780.1	protein_coding	phosphoribosylanthranilate isomerase 1	Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family. The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT1G07850.1	protein_coding	Protein of unknown function (DUF604)		transferring glycosyl group transferase (DUF604);(source:Araport11)
AT1G07690.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G07770.1	protein_coding	ribosomal protein S15A	Encodes cytoplasmic ribosomal protein S15a.	ribosomal protein S15A;(source:Araport11)
AT1G07840.1	protein_coding	Sas10/Utp3/C1D family		Sas10/Utp3/C1D family;(source:Araport11)
AT1G07870.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G07680.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G07750.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT1G07830.1	protein_coding	ribosomal protein L29 family protein		ribosomal protein L29 family protein;(source:Araport11)
AT1G07670.1	protein_coding	endomembrane-type CA-ATPase 4	TPLATE complex protein involved in clathrin-mediated endocytosis.	endomembrane-type CA-ATPase 4;(source:Araport11)
AT1G07740.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G07820.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT1G07660.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT1G07810.1	protein_coding	ER-type Ca2+-ATPase 1	Encodes an ER-type Ca2+-pumping ATPase. The mRNA is cell-to-cell mobile.	ER-type Ca2+-ATPase 1;(source:Araport11)
AT1G07650.1	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G07800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase., blastp match of 24%25 identity and 5.3e-10 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT1G07640.1	protein_coding	Dof-type zinc finger DNA-binding family protein	A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis. PEAR protein involved in the formation of a short-range concentration gradient that peaks at protophloem sieve elements, and activates gene expression that promotes radial growth. Locally promotes transcription of inhibitory HD-ZIP III genes, and thereby establishes a negative-feedback loop that forms a robust boundary that demarks the zone of cell division.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT1G07720.1	protein_coding	3-ketoacyl-CoA synthase 3	Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 3;(source:Araport11)
AT1G07630.1	protein_coding	pol-like 5	Encodes a protein phosphatase 2C  like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves.	pol-like 5;(source:Araport11)
AT1G07900.1	protein_coding	LOB domain-containing protein 1		LOB domain-containing protein 1;(source:Araport11)
AT1G07890.1	protein_coding	ascorbate peroxidase 1	Encodes a cytosolic ascorbate peroxidase APX1.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. The mRNA is cell-to-cell mobile.	ascorbate peroxidase 1;(source:Araport11)
AT1G63750.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G63650.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Mutants are defective in jasmonate-induced anthocyanin accumulation. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G63740.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G63800.1	protein_coding	ubiquitin-conjugating enzyme 5		ubiquitin-conjugating enzyme 5;(source:Araport11)
AT1G63730.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G63710.1	protein_coding	cytochrome P450, family 86, subfamily A, polypeptide 7	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers.	cytochrome P450, family 86, subfamily A, polypeptide 7;(source:Araport11)
AT1G63720.1	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G63700.1	protein_coding	Protein kinase superfamily protein	Member of MEKK subfamily, a component of the stomatal development regulatory pathway.  Mutations in this locus result in embryo lethality.	Protein kinase superfamily protein;(source:Araport11)
AT1G63690.1	protein_coding	SIGNAL PEPTIDE PEPTIDASE-LIKE 2		SIGNAL PEPTIDE PEPTIDASE-LIKE 2;(source:Araport11)
AT1G63770.1	protein_coding	Peptidase M1 family protein		Peptidase M1 family protein;(source:Araport11)
AT1G63680.1	protein_coding	acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases	Encodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis.  Localized to plastids.  AtMurE is involved in chloroplast biogenesis.	ALBINO OR PALE-GREEN 13;(source:Araport11)
AT1G63670.1	protein_coding	Protein of unknown function (DUF3741)		hypothetical protein (DUF3741);(source:Araport11)
AT1G63660.1	protein_coding	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative		GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase;(source:Araport11)
AT1G69600.1	protein_coding	zinc finger homeodomain  1	Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family.  Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1).  Expression of ZFHD1 is induced by drought, high salinity and abscisic acid.	zinc finger homeodomain 1;(source:Araport11)
AT1G69580.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT1G70490.1	protein_coding	Ras-related small GTP-binding family protein	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	Ras-related small GTP-binding family protein;(source:Araport11)
AT1G70530.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 3	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 3;(source:Araport11)
AT1G70500.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G70540.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G70510.1	protein_coding	KNOTTED-like from Arabidopsis thaliana 2	A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.	homeobox knotted-like protein;(source:Araport11)
AT1G70520.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 2	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 2;(source:Araport11)
AT1G70460.1	protein_coding	root hair specific 10	Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	root hair specific 10;(source:Araport11)
AT1G70470.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G70480.1	protein_coding	Domain of unknown function (DUF220)		OBP32pep, putative (DUF220);(source:Araport11)
AT1G68670.1	protein_coding	myb-like transcription factor family protein	HHO2 is a HRS1 homolog. Induced in roots by low Pi and is likely involved in maintaining phosphate homeostasis. It is  target of PHR1.	myb-like transcription factor family protein;(source:Araport11)
AT1G68660.1	protein_coding	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein	ClpS1 is a member of the caseionolytic proteinase S family of N-recognins. It is involved in proteolysis in the chloroplast stroma. An arginine residue (Arg50) controls low-affinity substrate binding.	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein;(source:Araport11)
AT1G68580.1	protein_coding	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein		Agenet and bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT1G68650.1	protein_coding	Uncharacterized protein family (UPF0016)		Uncharacterized protein family (UPF0016);(source:Araport11)
AT1G68570.1	protein_coding	Major facilitator superfamily protein	NPF3.1 is a membrane localized GA transporter that is expressed in the root endodermis.	Major facilitator superfamily protein;(source:Araport11)
AT1G68640.1	protein_coding	bZIP transcription factor family protein	Encodes bZIP-transcription factor. Mutant plants have extra floral organs. PAN is essential for AG activation in early flowers  of short-day-grown plants.	bZIP transcription factor family protein;(source:Araport11)
AT1G68560.1	protein_coding	alpha-xylosidase 1	Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.	alpha-xylosidase 1;(source:Araport11)
AT1G68710.1	protein_coding	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein		ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT1G68630.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT1G68610.1	protein_coding	PLANT CADMIUM RESISTANCE 11	Target promoter of the male germline-specific transcription factor DUO1.	PLANT CADMIUM RESISTANCE 11;(source:Araport11)
AT1G68700.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G68620.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G68690.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT1G68680.1	protein_coding			SH3/FCH domain protein;(source:Araport11)
AT1G68600.1	protein_coding	Aluminium activated malate transporter family protein		aluminum activated malate transporter family protein;(source:Araport11)
AT1G68590.1	protein_coding	Ribosomal protein PSRP-3/Ycf65		Ribosomal protein PSRP-3/Ycf65;(source:Araport11)
AT1G21590.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT1G21500.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G21430.1	protein_coding	Flavin-binding monooxygenase family protein		Flavin-binding monooxygenase family protein;(source:Araport11)
AT1G21510.1	protein_coding			TPRXL;(source:Araport11)
AT1G21450.1	protein_coding	SCARECROW-like 1	Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. The mRNA is cell-to-cell mobile.	SCARECROW-like 1;(source:Araport11)
AT1G21520.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G21460.1	protein_coding	Nodulin MtN3 family protein		Nodulin MtN3 family protein;(source:Araport11)
AT1G21480.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT1G21530.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G21390.1	protein_coding	embryo defective 2170		embryo defective 2170;(source:Araport11)
AT1G21440.1	protein_coding	Phosphoenolpyruvate carboxylase family protein		Phosphoenolpyruvate carboxylase family protein;(source:Araport11)
AT1G21340.1	protein_coding	Dof-type zinc finger DNA-binding family protein		Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT1G21540.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G21380.1	protein_coding	Target of Myb protein 1		Target of Myb protein 1;(source:Araport11)
AT1G21360.1	protein_coding	glycolipid transfer protein 2		glycolipid transfer protein 2;(source:Araport11)
AT1G21550.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT1G21350.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT1G21370.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G21560.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G21330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40680.1);(source:TAIR10)
AT1G21400.1	protein_coding	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein		Thiamin diphosphate-binding fold (THDP-binding) superfamily protein;(source:Araport11)
AT1G21580.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein	Encodes a zinc-finger protein that co-localizes with the exosome-associated RNA helicase HEN2 and functions as a co-factor of nuclear RNA quality control by the nucleoplasmic exosome.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G21410.1	protein_coding	F-box/RNI-like superfamily protein	AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1.  Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain.  Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis.  AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes.	F-box/RNI-like superfamily protein;(source:Araport11)
AT1G62360.1	protein_coding	KNOX/ELK homeobox transcription factor	Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.  It has also been shown to have a role in the specification of flower meristem identity.	KNOX/ELK homeobox transcription factor;(source:Araport11)
AT1G62370.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G62380.1	protein_coding	ACC oxidase 2	Encodes a protein similar to 1-aminocyclopropane-1-carboxylic oxidase (ACC oxidase). Expression of the AtACO2 transcripts is affected by ethylene.	ACC oxidase 2;(source:Araport11)
AT1G62390.1	protein_coding	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT1G62310.1	protein_coding	transcription factor jumonji (jmjC) domain-containing protein		transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT1G62400.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G62320.1	protein_coding	ERD (early-responsive to dehydration stress) family protein		ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT1G62410.1	protein_coding	MIF4G domain-containing protein		MIF4G domain-containing protein;(source:Araport11)
AT1G62330.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G62420.1	protein_coding	Protein of unknown function (DUF506) 		DUF506 family protein (DUF506);(source:Araport11)
AT1G62340.1	protein_coding	PA-domain containing subtilase family protein	Subtilisin-like serine protease required for epidermal surface formation in  embryos and juvenile plants	PA-domain containing subtilase family protein;(source:Araport11)
AT1G62430.1	protein_coding	CDP-diacylglycerol synthase 1	Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis.	CDP-diacylglycerol synthase 1;(source:Araport11)
AT1G62350.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G75030.1	protein_coding	thaumatin-like protein 3	encodes a PR5-like protein	thaumatin-like protein 3;(source:Araport11)
AT1G74770.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT1G74750.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G74740.1	protein_coding	calcium-dependent protein kinase 30	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 30;(source:Araport11)
AT1G74730.1	protein_coding	Protein of unknown function (DUF1118)	Encodes a grana core localized protein, is homologous to RIG1. Mutant plants have reduced NPQ, affected organization of light-havesting complex II and an enhanced grana stacking.	transmembrane protein, putative (DUF1118);(source:Araport11)
AT1G74790.1	protein_coding	catalytics		catalytics;(source:Araport11)
AT1G74780.1	protein_coding	Nodulin-like / Major Facilitator Superfamily protein		Nodulin-like / Major Facilitator Superfamily protein;(source:Araport11)
AT1G74800.1	protein_coding	Galactosyltransferase family protein	Encodes a Golgi-localized hydroxyproline galactosyltransferase GALT5. Functions together with GALT2 as redundant GALTs that control AGP (arabinogalactan-proteins) O-glycosylation, which is essential for normal growth and development. Mutants display multiple phenotypes including reduced root hair growth.	Galactosyltransferase family protein;(source:Araport11)
AT1G11680.1	protein_coding	CYTOCHROME P450 51G1	putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis. The mRNA is cell-to-cell mobile.	CYTOCHROME P450 51G1;(source:Araport11)
AT1G11670.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G11750.1	protein_coding	CLP protease proteolytic subunit 6	One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).	CLP protease proteolytic subunit 6;(source:Araport11)
AT1G11790.1	protein_coding	arogenate dehydratase 1	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis.  Not less than six genes encoding ADT were identi&#64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	arogenate dehydratase 1;(source:Araport11)
AT1G11660.1	protein_coding	heat shock protein 70 (Hsp 70) family protein		heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT1G11740.1	protein_coding	ankyrin repeat family protein		ankyrin repeat family protein;(source:Araport11)
AT1G11780.1	protein_coding	oxidoreductase, 2OG-Fe(II) oxygenase family protein		oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT1G11730.1	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT1G11810.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G11770.1	protein_coding	FAD-binding Berberine family protein	Encodes an oligogalacturonide oxidase that inactivates the elicitor-active oligogalacturonides (OGs).	FAD-binding Berberine family protein;(source:Araport11)
AT1G11720.1	protein_coding	starch synthase 3	Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).	starch synthase 3;(source:Araport11)
AT1G11650.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes an RNA binding protein with three RNA recognition motifs. The mRNA is cell-to-cell mobile.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G11760.1	protein_coding		Required for expression of CBF-controlled cold-responsive genes. Required for recruitment of the Mediator complex and RNA polymerase II to CBF-controlled cold-responsive genes. MED32 has now been annotated as the MED2 subunit of the Mediator complex.	mediator of RNA polymerase II transcription subunit-like protein;(source:Araport11)
AT1G11710.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G11630.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Ribosomal pentatricopeptide repeat protein	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G11700.1	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT1G11620.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G11690.1	protein_coding			BRANCHLESS TRICHOME-like protein;(source:Araport11)
AT1G11610.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 18	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 18;(source:Araport11)
AT1G11600.1	protein_coding	cytochrome P450, family 77, subfamily B, polypeptide 1	member of CYP77B	cytochrome P450, family 77, subfamily B, polypeptide 1;(source:Araport11)
AT1G11800.1	protein_coding	endonuclease/exonuclease/phosphatase family protein		endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT1G18650.1	protein_coding	plasmodesmata callose-binding protein 3	Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.	plasmodesmata callose-binding protein 3;(source:Araport11)
AT1G18630.1	protein_coding	glycine-rich RNA-binding protein 6	encodes a glycine-rich RNA binding protein.	glycine-rich RNA-binding protein 6;(source:Araport11)
AT1G18610.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	Galactose oxidase/kelch repeat superfamily protein, induced by calcium.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G18600.1	protein_coding	RHOMBOID-like protein 12	Mitochondrion-located rhomboid-like protein	RHOMBOID-like protein 12;(source:Araport11)
AT1G18580.1	protein_coding	galacturonosyltransferase 11	Encodes a protein with  putative galacturonosyltransferase activity.GAUT11 is required for pectin synthesis in seed coat epidermal cells and normal mucilage release.	galacturonosyltransferase 11;(source:Araport11)
AT1G18590.1	protein_coding	sulfotransferase 17	encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.	sulfotransferase 17;(source:Araport11)
AT1G18570.1	protein_coding	myb domain protein 51	Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis. The mRNA is cell-to-cell mobile.	myb domain protein 51;(source:Araport11)
AT1G18560.1	protein_coding	BED zinc finger ;hAT family dimerisation domain		BED zinc finger and hAT dimerization domain-containing protein;(source:Araport11)
AT1G18620.1	protein_coding		Member of a small gene family in Arabidopsis. Quadruple mutants in this family display defects in cell elongation.	LONGIFOLIA protein;(source:Araport11)
AT1G18550.1	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT1G18540.1	protein_coding	Ribosomal protein L6 family protein		Ribosomal protein L6 family protein;(source:Araport11)
AT1G18530.1	protein_coding	EF hand calcium-binding protein family	Calmodulin like protein. Paralog of CML16. Expression in flowers is restricted to anthers and mature pollen.	EF hand calcium-binding protein family;(source:Araport11)
AT1G57560.1	protein_coding	myb domain protein 50	Member of the R2R3 factor gene family.	myb domain protein 50;(source:Araport11)
AT1G56660.1	protein_coding			MAEBL domain protein;(source:Araport11)
AT1G56650.1	protein_coding	production of anthocyanin pigment 1	Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene. Auxin and ethylene responsiveness of PAP1 transcription is lost in myb12 mutants. Interacts with JAZ  proteins to regulate anthocyanin accumulation.	production of anthocyanin pigment 1;(source:Araport11)
AT1G56540.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G56710.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G56610.1	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT1G56600.1	protein_coding	galactinol synthase 2	GolS2 is a galactinol synthase that catalyzes the formation of galactinol from UDP-galactose and myo-inositol. GolS2 transcript levels rise in response to methyl viologen, an oxidative damage-inducing agent. Plants over-expressing GolS2 have increased tolerance to salt, chilling, and high-light stress.	galactinol synthase 2;(source:Araport11)
AT1G56690.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G56720.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G56590.1	protein_coding	Clathrin adaptor complexes medium subunit family protein	Involved in vesicle trafficking  between the trans -Golgi network and vacuoles.	Clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT1G56680.1	protein_coding	Chitinase family protein		Chitinase family protein;(source:Araport11)
AT1G56640.1	pseudogene			pseudogene of myb domain protein 114;(source:Araport11)
AT1G56580.1	protein_coding	Protein of unknown function, DUF538	Encodes SMALLER WITH VARIABLE BRANCHES (SVB), a protein with a conserved domain of unknown function (DUF538).  The trichomes of the SVB mutants are smaller and exhibit branches of variable length and number.	plant/protein (Protein of unknown function, DUF538);(source:Araport11)
AT1G56630.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G56570.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a mitochondria-localized pentatricopeptide repeat protein PGN.  Functions in defense against necrotrophic fungi and abiotic stress tolerance.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G56670.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G56560.1	protein_coding	Plant neutral invertase family protein	A/N-InvA is a neutral invertase that breaks sucrose down into fructose and glucose. It is member of the larger family of alkaline/neutral invertases (GH100). GFP-tagged A/N-InvA localizes to the mitochondria. atinva mutants have reduced root growth, reduced invertase activity, and increased expression of antioxidant genes under basal conditions. The levels of A/N-InvA transcripts rise in response to a hydrogen peroxide treatment.	Plant neutral invertase family protein;(source:Araport11)
AT1G56550.1	protein_coding	RhamnoGalacturonan speci&#64257;c Xylosyltransferase 1	Encodes a rhamnogalacturonan II specific xylosyltransferase.	RhamnoGalacturonan speci%26#64257;(source:Araport11)
AT1G56620.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G56700.1	protein_coding	Peptidase C15, pyroglutamyl peptidase I-like		Peptidase C15, pyroglutamyl peptidase I-like protein;(source:Araport11)
AT1G73710.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G73720.1	protein_coding	transducin family protein / WD-40 repeat family protein	Encodes SMU1, a protein involved in RNA splicing.	transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT1G73730.1	protein_coding	ETHYLENE-INSENSITIVE3-like 3	Encodes a putative transcription factor involved in ethylene signalling.  Isolated DNA binding domain has been shown to bind DNA in vitro.	ETHYLENE-INSENSITIVE3-like 3;(source:Araport11)
AT1G73740.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G73810.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G73650.1	protein_coding	Protein of unknown function (DUF1295)		3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295);(source:Araport11)
AT1G73600.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a S-adenosyl-L-methionine-dependent phosphoethanolamine N-methyltransferase whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in roots. It catalyzes the three sequential P-base methylation of phosphoethanolamine to phosphocholine.  Homologous biochemical function to NMT1 (At3g18000). Double mutants of NMT1 and NMT3 are defective in leaf, root, flower, seed, and pollen development.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G73750.1	protein_coding	Uncharacterised conserved protein UCP031088, alpha/beta hydrolase		alpha/beta hydrolase family protein;(source:Araport11)
AT1G73820.1	protein_coding	Ssu72-like family protein	Protein phosphatase which physically interacts with the RRM1 motif of FCA to antagonize FCA binding with COOLAIR, which is critical for PRC2 enrichment and H3K27me3 deposition.	Ssu72-like family protein;(source:Araport11)
AT1G73660.1	protein_coding	protein tyrosine kinase family protein	Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance.	protein tyrosine kinase family protein;(source:Araport11)
AT1G73680.1	protein_coding	alpha dioxygenase	Encodes an alpha dioxygenase.  Recombinant protein catalyzes the conversion of a wide range of fatty acids into 2(R)-hydroperoxy derivatives.	alpha dioxygenase;(source:Araport11)
AT1G73760.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G73830.1	protein_coding	BR enhanced expression 3	Encodes the brassinosteroid signaling component BEE3 (BR-ENHANCED EXPRESSION 3). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	BR enhanced expression 3;(source:Araport11)
AT1G73670.1	protein_coding	MAP kinase 15	member of MAP Kinase The mRNA is cell-to-cell mobile.	MAP kinase 15;(source:Araport11)
AT1G73690.1	protein_coding	cyclin-dependent kinase D1;1	cyclin dependent kinase activator CDKD;1. Nuclear localization. Involved in cell cycle regulation and cell differentiation.	cyclin-dependent kinase D1;(source:Araport11)
AT1G73770.1	protein_coding			coiled-coil protein;(source:Araport11)
AT1G73840.1	protein_coding	hydroxyproline-rich glycoprotein family protein	Resembles the CstF64 family of RNA processing factors that are conserved between yeast and mammals.  In mammals, CstF64 is a component of the CstF complex which is required for mRNA 3'end formation along with other factors.	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G73700.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G73610.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G73780.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G73790.1	protein_coding	Protein of unknown function (DUF3743)	Encodes a gamma-tubulin complex protein that plays a role in gamma-tubulin complex localization, spindle stability and chromosomal segregation.	mitotic-spindle organizing 1B-like protein (DUF3743);(source:Araport11)
AT1G73620.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT1G73630.1	protein_coding	EF hand calcium-binding protein family		EF hand calcium-binding protein family;(source:Araport11)
AT1G73640.1	protein_coding	RAB GTPase homolog A6A		RAB GTPase homolog A6A;(source:Araport11)
AT1G23310.1	protein_coding	glutamate:glyoxylate aminotransferase	Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.	glutamate:glyoxylate aminotransferase;(source:Araport11)
AT1G23320.1	protein_coding	tryptophan aminotransferase related 1	Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. This gene appears to be expressed at a very low level during seedling development. Triple mutant analyses implicate this gene in embryonic development.	tryptophan aminotransferase related 1;(source:Araport11)
AT1G23340.1	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal proteinase, putative (DUF239);(source:Araport11)
AT1G23350.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G23230.1	protein_coding		Mediator tail subunit, involved in transcriptional regulation.	mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT1G23360.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a 2-phytyl-1,4-naphthoquinone methyltransferase that catalyzes the final step in phylloquinone (vitamin K1) biosynthesis.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G23270.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G23330.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G23280.1	protein_coding	MAK16 protein-related		MAK16 protein-like protein;(source:Araport11)
AT1G23290.1	protein_coding	Ribosomal protein L18e/L15 superfamily protein	Encodes a ribosomal protein L27A, a constituent of the large subunit of the ribosomal complex.  Regulated by TCP20. The mRNA is cell-to-cell mobile.	Ribosomal protein L18e/L15 superfamily protein;(source:Araport11)
AT1G23260.1	protein_coding	MMS ZWEI homologue 1	MMZ1/UEV1A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ1/UEV1A and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ1/UEV1A transcripts are found at low levels in most plant organs, but cannot be detected in the pollen. Transcript levels do not appear to be stress-inducible. The uev1a-1 mutant shows normal sensitivity to MMS in germination assays suggesting that UEV1A is not required for DNA damage tolerance during this developmental stage.	MMS ZWEI homologue 1;(source:Araport11)
AT1G23250.1	protein_coding	Caleosin-related family protein		Caleosin-related family protein;(source:Araport11)
AT1G23240.1	protein_coding	Caleosin-related family protein		Caleosin-related family protein;(source:Araport11)
AT1G23190.1	protein_coding	Phosphoglucomutase/phosphomannomutase family protein	Encodes a cytosolic phosphoglucomutase (PGM).  Two Arabidopsis PGM proteins (AT1G70730/PGM2 and AT1G23190/PGM3) have high sequence similarities and redundant functions. Mature plants possessing a single cPGM allele had a major reduction in cPGM activity. Whereas pgm2 and pgm3 single mutants are undistinguishable from the wild type, loss of both PGM2 and PGM3 severely impairs male and female gametophyte development. The mRNA is cell-to-cell mobile.	Phosphoglucomutase/phosphomannomutase family protein;(source:Araport11)
AT1G23300.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G30480.1	protein_coding	D111/G-patch domain-containing protein	recombination and DNA-damage resistance protein (DRT111)	D111/G-patch domain-containing protein;(source:Araport11)
AT1G30540.1	protein_coding	Actin-like ATPase superfamily protein		Actin-like ATPase superfamily protein;(source:Araport11)
AT1G30490.1	protein_coding	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein	Dominant PHV mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Has overlapping functions with PHABULOSA, REVOLUTA and CORONA/ATHB15 in patterning the apical portion of the embryo. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain.	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein;(source:Araport11)
AT1G30510.1	protein_coding	root FNR 2	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	root FNR 2;(source:Araport11)
AT1G30500.1	protein_coding	nuclear factor Y, subunit A7		nuclear factor Y, subunit A7;(source:Araport11)
AT1G30420.1	protein_coding	multidrug resistance-associated protein 12	member of MRP subfamily	multidrug resistance-associated protein 12;(source:Araport11)
AT1G30440.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G30520.1	protein_coding	acyl-activating enzyme 14	Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.	acyl-activating enzyme 14;(source:Araport11)
AT1G30450.1	protein_coding	cation-chloride co-transporter 1	member of Cation-chloride co-transporter family	cation-chloride co-transporter 1;(source:Araport11)
AT1G30460.1	protein_coding	cleavage and polyadenylation specificity factor 30	Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding  protein capable of  interacting with itself and with calmodulin. Its RNA-binding  activity is inhibited by calmodulin in a calcium-dependent fashion.	cleavage and polyadenylation specificity factor 30;(source:Araport11)
AT1G30550.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferase superfamily protein;(source:Araport11)
AT1G30470.1	protein_coding	SIT4 phosphatase-associated family protein		SIT4 phosphatase-associated family protein;(source:Araport11)
AT1G30530.1	protein_coding	UDP-glucosyl transferase 78D1	The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetin	UDP-glucosyl transferase 78D1;(source:Araport11)
AT1G45000.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT1G45100.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G45170.1	protein_coding			outer envelope pore 24B-like protein;(source:Araport11)
AT1G45110.1	protein_coding	Tetrapyrrole (Corrin/Porphyrin) Methylases		Tetrapyrrole (Corrin/Porphyrin) Methylase;(source:Araport11)
AT1G45010.1	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G45180.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G45190.1	protein_coding	downregulated in DIF1 18		downregulated in DIF1 18;(source:Araport11)
AT1G44900.1	protein_coding	minichromosome maintenance (MCM2/3/5) family protein	Encodes MCM2 (MINICHROMOSOME MAINTENANCE 2), a protein essential to embryo development. Overexpression results in altered root meristem function.	minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT1G45080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05480.1);(source:TAIR10)
AT1G44980.1	protein_coding	pectin methylesterase 7		pectin methylesterase 7;(source:Araport11)
AT1G45050.1	protein_coding	Ubiquitin-conjugating enzyme family protein	member of ubiquitin-conjugating E2-proteins	Ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT1G44990.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G45130.1	protein_coding	beta-galactosidase 5		beta-galactosidase 5;(source:Araport11)
AT1G45150.1	protein_coding			alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase;(source:Araport11)
AT1G44970.1	protein_coding	Peroxidase superfamily protein	Encodes a class III peroxidase that is genetically redundant with PRX40, expressed in the tapetum, and essential for proper anther and pollen development.	Peroxidase superfamily protein;(source:Araport11)
AT1G45160.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G45090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28480.1);(source:TAIR10)
AT1G32240.1	protein_coding	Homeodomain-like superfamily protein	Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G49150.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G49140.1	protein_coding	Complex I subunit NDUFS6		NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 10-B-like protein (Complex I subunit NDUFS6);(source:Araport11)
AT1G49210.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G49200.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G49240.1	protein_coding	actin 8	Member of a subclass of actins composed of ACT2 and ACT8. Its mRNA is strongly expressed in strongly expressed in leaves, roots, stems, flowers, pollen, and siliques. However, protein expression, assayed by a ACT8:GUS fusion reporter, is very low in pollen.	actin 8;(source:Araport11)
AT1G49130.1	protein_coding	B-box type zinc finger protein with CCT domain	Regulated by heat shock.	B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT1G49120.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G49110.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G49230.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G49100.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G48920.1	protein_coding	nucleolin like 1	Encodes ATNUC-L1 (NUCLEOLIN LIKE 1), the predominant form of the two nucleolin proteins found in Arabidopsis. This protein is involved in rRNA processing, ribosome biosynthesis, and vascular pattern formation. PARL1 localizes to the nucleolus and parl1 mutants accumulate elevated levels of the unspliced 35S pre-rRNA. parl1 mutants also have defects in cotyledon, leaf, sepal, and petal vein patterning and have reduced stature, reduced fertility, increased bushiness, and reduced root length. The sugar-induced expression of ribosome proteins is also reduced in parl1 mutants. The mRNA is cell-to-cell mobile.	nucleolin like 1;(source:Araport11)
AT1G49000.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G49010.1	protein_coding	Duplicated homeodomain-like superfamily protein		Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT1G49050.1	protein_coding	Eukaryotic aspartyl protease family protein	Encodes a member of the aspartyl protease family. Interacts with BAGP1 and BAG6 and appears to be required for cleavage of BAG6 as BAG6 is not cleaved in APCB1 mutant backgrounds.	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G48990.1	protein_coding	Oleosin family protein		Oleosin family protein;(source:Araport11)
AT1G49190.1	protein_coding	response regulator 19	member of Response Regulator: B- Type	response regulator 19;(source:Araport11)
AT1G49040.1	protein_coding	stomatal cytokinesis defective / SCD1 protein (SCD1)	Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells.  The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile.	stomatal cytokinesis defective / SCD1 protein (SCD1);(source:Araport11)
AT1G48980.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G49090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.7e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G49180.1	protein_coding	protein kinase family protein		protein kinase family protein;(source:Araport11)
AT1G49220.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G49170.1	protein_coding	Protein of unknown function (DUF167)		hypothetical protein;(source:Araport11)
AT1G49160.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its	Protein kinase superfamily protein;(source:Araport11)
AT1G49030.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT1G48880.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 7	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 7;(source:Araport11)
AT1G48850.1	protein_coding	chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative		chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase;(source:Araport11)
AT1G48910.1	protein_coding	Flavin-containing monooxygenase family protein	A paternally expressed imprinted gene.	Flavin-containing monooxygenase family protein;(source:Araport11)
AT1G48900.1	protein_coding	Signal recognition particle, SRP54 subunit protein		Signal recognition particle, SRP54 subunit protein;(source:Araport11)
AT1G31730.1	protein_coding	Adaptin family protein	Encodes a component of the AP4 complex and is involved in vacuolar sorting of storage proteins.	Adaptin family protein;(source:Araport11)
AT1G31640.1	protein_coding	AGAMOUS-like 92	A paternally expressed imprinted gene.	AGAMOUS-like 92;(source:Araport11)
AT1G31720.1	protein_coding	Protein of unknown function (DUF1218)		chitin synthase, putative (DUF1218);(source:Araport11)
AT1G31630.1	protein_coding	AGAMOUS-like 86		AGAMOUS-like 86;(source:Araport11)
AT1G31710.1	protein_coding	Copper amine oxidase family protein		Copper amine oxidase family protein;(source:Araport11)
AT1G31620.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G31690.1	protein_coding	Copper amine oxidase family protein		Copper amine oxidase family protein;(source:Araport11)
AT1G31480.1	protein_coding	shoot gravitropism 2 (SGR2)	encodes a novel protein that may be part of a gene family represented by bovine phosphatidic acid-preferring phospholipase A1 (PA-PLA1)containing a putative transmembrane domain. SGR2 is involved in the formation and function of the vacuole.	shoot gravitropism 2 (SGR2);(source:Araport11)
AT1G31670.1	protein_coding	Copper amine oxidase family protein		Copper amine oxidase family protein;(source:Araport11)
AT1G31660.1	protein_coding		Encodes a protein that is a ribosome biogenesis co-factor. Mutants display aberrant RNA processing and male and female gametophyte development.	bystin-like protein;(source:Araport11)
AT1G31650.1	protein_coding	RHO guanyl-nucleotide exchange factor 14	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 14;(source:Araport11)
AT1G26330.1	protein_coding	DNA binding		DNA binding protein;(source:Araport11)
AT1G26250.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT1G26320.1	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT1G26240.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT1G26160.1	protein_coding	Metal-dependent phosphohydrolase		Metal-dependent phosphohydrolase;(source:Araport11)
AT1G26230.1	protein_coding	TCP-1/cpn60 chaperonin family protein	Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins.  Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).	TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT1G26150.1	protein_coding	proline-rich extensin-like receptor kinase 10	Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	proline-rich extensin-like receptor kinase 10;(source:Araport11)
AT1G26300.1	protein_coding	BSD domain-containing protein		BSD domain-containing protein;(source:Araport11)
AT1G26220.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G26200.1	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G26140.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G26290.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G26210.1	protein_coding	SOB five-like 1	AtSOFL1 acts redundantly with AtSOFL2 as positive regulator of cytokinin levels.	SOB five-like 1;(source:Araport11)
AT1G26270.1	protein_coding	Phosphatidylinositol 3- and 4-kinase family protein		Phosphatidylinositol 3- and 4-kinase family protein;(source:Araport11)
AT1G26260.1	protein_coding	cryptochrome-interacting basic-helix-loop-helix 5	Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix).  Related to CIB1 (AT4G34530).  CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.	cryptochrome-interacting basic-helix-loop-helix 5;(source:Araport11)
AT1G26190.1	protein_coding	Phosphoribulokinase / Uridine kinase family	TTM2 is a triphosphate tunnel metalloenzyme that displays pyrophosphatase activity.It contains both a uridine kinase (UK) domain and CYTH domain. TTM2 is involved in negative regulation defense response to pathogens (PMID:28733390).	Phosphoribulokinase / Uridine kinase family;(source:Araport11)
AT1G26180.1	protein_coding			membrane protein;(source:Araport11)
AT1G26170.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G26310.1	protein_coding	K-box region and MADS-box transcription factor family protein 	Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G23450.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	pentatricopeptide (PPR) repeat-containing protein	PPR superfamily protein;(source:Araport11)
AT1G23650.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G23440.1	protein_coding	Peptidase C15, pyroglutamyl peptidase I-like		Peptidase C15, pyroglutamyl peptidase I-like protein;(source:Araport11)
AT1G66490.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G66450.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G66480.1	protein_coding	plastid movement impaired 2	Involved in chloroplast avoidance movement under intermediate and high light intensities	plastid movement impaired 2;(source:Araport11)
AT1G66570.1	protein_coding	sucrose-proton symporter 7		sucrose-proton symporter 7;(source:Araport11)
AT1G66470.1	protein_coding	ROOT HAIR DEFECTIVE6		ROOT HAIR DEFECTIVE6;(source:Araport11)
AT1G66550.1	protein_coding	WRKY DNA-binding protein 67	member of WRKY Transcription Factor; Group III	WRKY DNA-binding protein 67;(source:Araport11)
AT1G66460.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G66540.1	protein_coding	Cytochrome P450 superfamily protein		Cytochrome P450 superfamily protein;(source:Araport11)
AT1G66440.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G66530.1	protein_coding	Arginyl-tRNA synthetase, class Ic		Arginyl-tRNA synthetase, class Ic;(source:Araport11)
AT1G66510.1	protein_coding	AAR2 protein family		AAR2 protein family;(source:Araport11)
AT1G66500.1	protein_coding	Pre-mRNA cleavage complex II		Pre-mRNA cleavage complex II;(source:Araport11)
AT1G66520.1	protein_coding	formyltransferase, putative		formyltransferase;(source:Araport11)
AT1G17350.1	protein_coding	NADH:ubiquinone oxidoreductase intermediate-associated protein 30		NADH:ubiquinone oxidoreductase intermediate-associated protein 30;(source:Araport11)
AT1G17340.1	protein_coding	Phosphoinositide phosphatase family protein		Phosphoinositide phosphatase family protein;(source:Araport11)
AT1G43880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30810.1);(source:TAIR10)
AT1G43780.1	protein_coding	serine carboxypeptidase-like 44		serine carboxypeptidase-like 44;(source:Araport11)
AT1G43790.1	protein_coding	tracheary element differentiation-related 6		tracheary element differentiation-related 6;(source:Araport11)
AT1G43850.1	protein_coding	SEUSS transcriptional co-regulator	Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.	SEUSS transcriptional co-regulator;(source:Araport11)
AT1G43800.1	protein_coding	Plant stearoyl-acyl-carrier-protein desaturase family protein		Plant stearoyl-acyl-carrier-protein desaturase family protein;(source:Araport11)
AT1G43770.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G43860.1	protein_coding	sequence-specific DNA binding transcription factors		sequence-specific DNA binding transcription factor;(source:Araport11)
AT1G43810.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G43870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G08113.1);(source:TAIR10)
AT1G43900.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G43840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 5.2e-121 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G36590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.7e-200 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G36480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.6e-35 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT1G36580.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G36550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] (GB:ABA98367.2);(source:TAIR10)
AT1G36470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 4.8e-152 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT1G36560.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.1e-108 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G36510.1	protein_coding	Nucleic acid-binding proteins superfamily		Nucleic acid-binding proteins superfamily;(source:Araport11)
AT1G36430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);retrotransposon family;(source:TAIR10)
AT1G36440.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287;(source:TAIR10)
AT1G36460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.7e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G36620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.6e-54 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G77920.1	protein_coding	bZIP transcription factor family protein		bZIP transcription factor family protein;(source:Araport11)
AT1G78050.1	protein_coding	phosphoglycerate/bisphosphoglycerate mutase		phosphoglycerate/bisphosphoglycerate mutase;(source:Araport11)
AT1G77860.1	protein_coding	Rhomboid-related intramembrane serine protease family protein	Mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane Protein	Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT1G77930.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G77980.1	protein_coding	AGAMOUS-like 66	Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL66 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.	AGAMOUS-like 66;(source:Araport11)
AT1G78060.1	protein_coding	Glycosyl hydrolase family protein		Glycosyl hydrolase family protein;(source:Araport11)
AT1G78000.1	protein_coding	sulfate transporter 1;2	Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.	sulfate transporter 1;(source:Araport11)
AT1G77940.1	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT1G78010.1	protein_coding	tRNA modification GTPase, putative		tRNA modification GTPase;(source:Araport11)
AT1G77950.1	protein_coding	AGAMOUS-like 67		AGAMOUS-like 67;(source:Araport11)
AT1G78020.1	protein_coding	Protein of unknown function (DUF581)	FCS like zinc finger 6 is induced during energy starvation through SnRK1 signaling. Mutants accumulate more SnRK1alpha1 which results in the inhibition of seedling growth under favorable growth conditions. Increased SnRK1 activity in the mutant also results in the downregulation of TOR signaling (DOI:10.1111/tpj.13854).	senescence-associated family protein, putative (DUF581);(source:Araport11)
AT1G77960.1	protein_coding			repressor ROX1-like protein;(source:Araport11)
AT1G77800.1	protein_coding	PHD finger family protein		PHD finger family protein;(source:Araport11)
AT1G77850.1	protein_coding	auxin response factor 17	Encodes a transcriptional regulator that directly binds to the promoter of MYB108 and plays a crucial role in anther dehiscence, pollen wall pattern formation, tapetum development, and auxin signal transduction in anthers. It is post-transcriptionally regulated by miR160 and regulates early auxin response genes.	auxin response factor 17;(source:Araport11)
AT1G78030.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G77890.1	protein_coding	DNA-directed RNA polymerase II protein		DNA-directed RNA polymerase II protein;(source:Araport11)
AT1G78040.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT1G77870.1	protein_coding	membrane-anchored ubiquitin-fold protein 5 precursor		membrane-anchored ubiquitin-fold protein 5 precursor;(source:Araport11)
AT1G77910.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G77880.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G78070.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G78080.1	protein_coding	related to AP2 4	Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling. The mRNA is cell-to-cell mobile.	related to AP2 4;(source:Araport11)
AT1G77990.1	protein_coding	STAS domain / Sulfate transporter family	Encodes a low-affinity sulfate transporter.	STAS domain / Sulfate transporter family;(source:Araport11)
AT1G31180.1	protein_coding	isopropylmalate dehydrogenase 3	The AtIMD3 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.	isopropylmalate dehydrogenase 3;(source:Araport11)
AT1G31190.1	protein_coding	myo-inositol monophosphatase like 1	Encodes a myo-inositol monophosphatase IMPL1 (myo-Inositol monophosphatase like 1).	myo-inositol monophosphatase like 1;(source:Araport11)
AT1G31130.1	protein_coding			polyadenylate-binding protein 1-B-binding protein;(source:Araport11)
AT1G31200.1	protein_coding	phloem protein 2-A9		phloem protein 2-A9;(source:Araport11)
AT1G31140.1	protein_coding	GORDITA	Encodes a B-sister MADS-box protein, GORDITA which is specific to the Brassicaceae. GOA is the most closely related paralog of ABS. GOA represses fruit growth and contributes to integument development.  Over-expression of GOA results in disorganized floral structure and addition of carpel-like  features to sepals.	GORDITA;(source:Araport11)
AT1G31210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.3e-253 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT1G31150.1	protein_coding	Domain of unknown function (DUF1985)		K-box region protein (DUF1985);(source:Araport11)
AT1G31220.1	protein_coding	Formyl transferase	N10-formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase that catalyzes the conversion of phosphoribosyl glycineamide to phosphoribosyl N-formylglycineamide	Formyl transferase;(source:Araport11)
AT1G31160.1	protein_coding	HISTIDINE TRIAD NUCLEOTIDE-BINDING 2	Encodes a member of the histidine triad nucleotide-binding family of proteins, but its activity has not been determined.	HISTIDINE TRIAD NUCLEOTIDE-BINDING 2;(source:Araport11)
AT1G31230.1	protein_coding	aspartate kinase-homoserine dehydrogenase i	Encodes a bifunctional aspartate kinase/homoserine dehydrogenase.  These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.	aspartate kinase-homoserine dehydrogenase i;(source:Araport11)
AT1G31080.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G31090.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G31170.1	protein_coding	sulfiredoxin	encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress	sulfiredoxin;(source:Araport11)
AT1G31100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.7e-35 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G31120.1	protein_coding	K+ uptake permease 10	potassium transporter	K+ uptake permease 10;(source:Araport11)
AT1G37170.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-84 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G37160.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GI:4567296 from (Arabidopsis thaliana);(source:TAIR10)
AT1G37150.1	protein_coding	holocarboxylase synthetase 2	Although HCS2 is predicted to encode a biotin protein ligase / holocarboxylase synthetase (HCS), hcs2 mutants do not show a decrease in HCS activity. A dual-targeted HCS1 (At2g25710) might account for the HCS activity observed in multiple subcellular compartments in Arabidopsis.	holocarboxylase synthetase 2;(source:Araport11)
AT1G37140.1	protein_coding	MEI2 C-terminal RRM only like 1	Amember of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only. MCT1 expression is increased in the presence of ABA and RNAi suppression showed increased germination rates in the presence of ABA.	MEI2 C-terminal RRM only like 1;(source:Araport11)
AT1G37080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G01980.1);(source:TAIR10)
AT1G37130.1	protein_coding	nitrate reductase 2	Identified as a mutant resistant to chlorate. Encodes nitrate reductase structural gene. Involved in nitrate assimilation. Has nitrate reductase activity. Up-regulated by the fungus P. indica. Binds transcription factor At2g35940. The mRNA is cell-to-cell mobile.	nitrate reductase 2;(source:Araport11)
AT1G37110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G27880.1	protein_coding	DEAD/DEAH box RNA helicase family protein 		DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT1G27840.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G27850.1	protein_coding			RUN/FYVE domain protein;(source:Araport11)
AT1G27870.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G27860.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT1G29310.1	protein_coding	SecY protein transport family protein		SecY protein transport family protein;(source:Araport11)
AT1G29120.1	protein_coding	Hydrolase-like protein family		Hydrolase-like protein family;(source:Araport11)
AT1G29290.1	protein_coding			B-cell lymphoma 6 protein;(source:Araport11)
AT1G29100.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G29280.1	protein_coding	WRKY DNA-binding protein 65	member of WRKY Transcription Factor; Group II-e The mRNA is cell-to-cell mobile.	WRKY DNA-binding protein 65;(source:Araport11)
AT1G29090.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT1G29270.1	protein_coding			transcription factor bHLH35-like protein;(source:Araport11)
AT1G29080.1	protein_coding	Papain family cysteine protease		Papain family cysteine protease;(source:Araport11)
AT1G29260.1	protein_coding	peroxin 7	Encodes the peroxisomal targeting signal type 2 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS2 consensus sequence (RLX5HL or a variant) within the first 30 or so amino acids. RNAi experiments suggest that PEX7 is necessary for the maintenance of glyoxysomal but not leaf peroxisomal function. The mRNA is cell-to-cell mobile.	peroxin 7;(source:Araport11)
AT1G29070.1	protein_coding	Ribosomal protein L34		Ribosomal protein L34;(source:Araport11)
AT1G29250.1	protein_coding	Alba DNA/RNA-binding protein		Alba DNA/RNA-binding protein;(source:Araport11)
AT1G29060.1	protein_coding	Target SNARE coiled-coil domain protein	Encodes a golgi localized QcSNARE involved in response to salt and osmotic stress. Overexpression confers increased resistance to NaCl, mannitol and LiCl. SFT12 may act by mediating vacuolar sequestration of NaCl and other ions.	Target SNARE coiled-coil domain protein;(source:Araport11)
AT1G29050.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 38	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 38;(source:Araport11)
AT1G29040.1	protein_coding			50S ribosomal protein L34;(source:Araport11)
AT1G29240.1	protein_coding	Protein of unknown function (DUF688)		transcription initiation factor TFIID subunit, putative (DUF688);(source:Araport11)
AT1G29230.1	protein_coding	CBL-interacting protein kinase 18	Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.20), which has also been reported as a member of the CBL-interacting protein kinases (CIPK18).	CBL-interacting protein kinase 18;(source:Araport11)
AT1G29220.1	protein_coding	transcriptional regulator family protein		transcriptional regulator family protein;(source:Araport11)
AT1G29200.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G29190.1	pseudogene			pseudogene of hypothetical protein (DUF295);(source:Araport11)
AT1G29030.1	protein_coding	Apoptosis inhibitory protein 5 (API5)		Apoptosis inhibitory protein 5 (API5);(source:Araport11)
AT1G29170.1	protein_coding	SCAR family protein	Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT1G29160.1	protein_coding	Dof-type zinc finger DNA-binding family protein	Encodes a DOF transcription factor involved in seed coat development.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT1G29300.1	protein_coding	Plant protein of unknown function (DUF641)		intracellular protein transporter, putative (DUF641);(source:Araport11)
AT1G29150.1	protein_coding	non-ATPase subunit 9	specifically interacts with FUS6/COP11 via the C-terminal domain of FUS6/COP11 and associates with an ATPase subunit of the 19S proteasome regulatory complex, AtS6A. The mRNA is cell-to-cell mobile.	non-ATPase subunit 9;(source:Araport11)
AT1G29140.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT1G29110.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT1G29180.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G76720.1	protein_coding	eukaryotic translation initiation factor 2 (eIF-2) family protein		eukaryotic translation initiation factor 2 (eIF-2) family protein;(source:Araport11)
AT1G76830.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G76760.1	protein_coding	thioredoxin Y1	Encodes a y-type thioredoxin (Trx-y1) localized in chloroplast stroma.	thioredoxin Y1;(source:Araport11)
AT1G76850.1	protein_coding	exocyst complex component sec5	Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. The mRNA is cell-to-cell mobile.	exocyst complex component sec5;(source:Araport11)
AT1G76770.1	protein_coding	HSP20-like chaperones superfamily protein	HSP20-like chaperone	HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G76660.1	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G76780.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G76670.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT1G76790.1	protein_coding	O-methyltransferase family protein	Encodes a protein with similarity to N-acetylserotonin O-methyltransferase (ASMT) but it does not have ASMT activity in vitro.	O-methyltransferase family protein;(source:Araport11)
AT1G76680.1	protein_coding	12-oxophytodienoate reductase 1	Encodes a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases.  One of the closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer.  Shows activity towards 2,4,6-trinitrotoluene.  Expressed predominately in root.  Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. Predicted to be a cytosolic protein.	12-oxophytodienoate reductase 1;(source:Araport11)
AT1G76800.1	protein_coding	Vacuolar iron transporter (VIT) family protein	The gene encodes nodulin-like2 whose transcript abundance was repressed under conditions of Fe-deficient growth.	Vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT1G76690.1	protein_coding	12-oxophytodienoate reductase 2	Encodes one of the closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Shows activity towards 2,4,6-trinitrotoluene.  Expressed predominately in root. Predicted to be a cytosolic protein.	12-oxophytodienoate reductase 2;(source:Araport11)
AT1G76700.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G76640.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT1G76730.1	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein	Encodes a paralog of ATP-dependent folate salvage enzyme 5-formyltetrahydrofolate cycloligase (5-FCL) that is targeted to chloroplasts and to be required for embryo viability and lacks 5-FCL activity.	NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT1G76810.1	protein_coding	eukaryotic translation initiation factor 2 (eIF-2) family protein		eukaryotic translation initiation factor 2 (eIF-2) family protein;(source:Araport11)
AT1G76740.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G76820.1	protein_coding	eukaryotic translation initiation factor 2 (eIF-2) family protein		eukaryotic translation initiation factor 2 (eIF-2) family protein;(source:Araport11)
AT1G76710.1	protein_coding	SET domain group 26		SET domain group 26;(source:Araport11)
AT1G76750.1	protein_coding	Protein of unknown function (DUF1278)	Encodes a small cysteine-rich protein that is secreted by the egg cell during gamete interactions. The regulated secretion of EC1 by the egg cell upon sperm-egg interaction is proposed to ensure the appropriate localization of the cell-fusion machinery in distinct sperm membrane domains to accomplish gamete fusion.	egg cell-secreted-like protein (DUF1278);(source:Araport11)
AT1G76650.1	protein_coding	calmodulin-like 38		calmodulin-like 38;(source:Araport11)
AT1G72800.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G72630.1	protein_coding	ELF4-like 2		ELF4-like 2;(source:Araport11)
AT1G72710.1	protein_coding	casein kinase 1-like protein 2	Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus. The mRNA is cell-to-cell mobile.	casein kinase 1-like protein 2;(source:Araport11)
AT1G72620.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G72700.1	protein_coding	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein		ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT1G72540.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G72790.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G72690.1	protein_coding			neurofilament heavy protein;(source:Araport11)
AT1G72530.1	protein_coding	plastid developmental protein DAG, putative	Member of MORF family consisting of of nine full-length proteins encoded in the nuclear genome. MORF proteins are required for all RNA editing events in plastids and for many, possibly also all, sites in mitochondria. Potential link between the RNA binding PPR protein and the protein contributing the enzymatic activity in RNA editing.	plastid developmental protein DAG;(source:Araport11)
AT1G72610.1	protein_coding	germin-like protein 1	germin-like protein (GLP1)	germin-like protein 1;(source:Araport11)
AT1G72680.1	protein_coding	cinnamyl-alcohol dehydrogenase		cinnamyl-alcohol dehydrogenase;(source:Araport11)
AT1G72520.1	protein_coding	PLAT/LH2 domain-containing lipoxygenase family protein		PLAT/LH2 domain-containing lipoxygenase family protein;(source:Araport11)
AT1G72600.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G72670.1	protein_coding	IQ-domain 8	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 8;(source:Araport11)
AT1G72770.1	protein_coding	HYPERSENSITIVE TO ABA1	mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C; regulates the activation of the Snf1-related kinase OST1 by abscisic acid. The mRNA is cell-to-cell mobile.	HYPERSENSITIVE TO ABA1;(source:Araport11)
AT1G72590.1	protein_coding	3-oxo-5-alpha-steroid 4-dehydrogenase family protein	Encodes a polyphenol reductase.	3-oxo-5-alpha-steroid 4-dehydrogenase family protein;(source:Araport11)
AT1G72660.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G72760.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G72580.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G72650.1	protein_coding	TRF-like 6	Arabidopsis thaliana myb family transcription factor (At1g72650)	TRF-like 6;(source:Araport11)
AT1G72750.1	protein_coding	translocase inner membrane subunit 23-2		translocase inner membrane subunit 23-2;(source:Araport11)
AT1G72570.1	protein_coding	Integrase-type DNA-binding superfamily protein		Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G72640.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G72740.1	protein_coding	Homeodomain-like/winged-helix DNA-binding family protein	Single Myb Histone (SMH) gene family member. Contains terminal acidic SANT domain.	Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
AT1G72560.1	protein_coding	ARM repeat superfamily protein	Encodes a karyopherin, specifically the Arabidopsis ortholog of LOS1/XPOT, a protein that mediates nuclear export of tRNAs in yeast and mammals.  PSD is capable of rescuing the tRNA export defect of los1 in S. cerevisiae. psd mutants display disrupted initiation of the shoot apical meristem and delay leaf initiation after germination; they also display delayed transition from vegetative to reproductive development.	ARM repeat superfamily protein;(source:Araport11)
AT1G72730.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT1G72550.1	protein_coding	tRNA synthetase beta subunit family protein		tRNA synthetase beta subunit family protein;(source:Araport11)
AT1G72720.1	protein_coding	Protein of unknown function (DUF3511)		hypothetical protein (DUF3511);(source:Araport11)
AT1G72030.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G72020.1	protein_coding			TonB-dependent heme receptor A;(source:Araport11)
AT1G72010.1	protein_coding	TCP family transcription factor 		TCP family transcription factor;(source:Araport11)
AT1G72120.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G72110.1	protein_coding	O-acyltransferase (WSD1-like) family protein		O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT1G72060.1	protein_coding	serine-type endopeptidase inhibitors		serine-type endopeptidase inhibitor;(source:Araport11)
AT1G72090.1	protein_coding	Methylthiotransferase		Methylthiotransferase;(source:Araport11)
AT1G72100.1	protein_coding	late embryogenesis abundant domain-containing protein / LEA domain-containing protein		late embryogenesis abundant domain-containing protein / LEA domain-containing protein;(source:Araport11)
AT1G72070.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G72080.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G72050.1	protein_coding	transcription factor IIIA	Encodes a transcriptional factor TFIIIA required for transcription of 5S rRNA gene.  5S rRNA is the smallest constituent of the ribosome.  Work on one of the gene models AT1G72050.2 showed that it encodes a protein with nine Cys(2)-His(2)-type zinc fingers, a characteristic feature of TFIIIA proteins. AT1G72050.2 also contains a 23 amino acid spacer between fingers 1 and 2, a 66 amino acid spacer between fingers 4 and 5, and a 50 amino acid non-finger C-terminal tail.  in vitro assay demonstrated that AT1g72050.2 binds to 5S rDNA  and efficiently stimulates the transcription of 5S rRNA. AT1g72050.2 also binds to 5S rRNA in vitro. AT1g72050.2 is located at several nuclear foci including the nucleolus and is absent from the cytoplasm.	transcription factor IIIA;(source:Araport11)
AT1G72040.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a multisubstrate deoxyribonucleoside  kinase that salvages DNA precursors.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G20840.1	protein_coding	tonoplast monosaccharide transporter1	The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues.	tonoplast monosaccharide transporter1;(source:Araport11)
AT1G20530.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		girdin (DUF630 and DUF632);(source:Araport11)
AT1G20740.1	protein_coding	Protein of unknown function (DUF833)		transport/golgi organization-like protein (DUF833);(source:Araport11)
AT1G20750.1	protein_coding	RAD3-like DNA-binding helicase protein		RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G20670.1	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT1G20850.1	protein_coding	xylem cysteine peptidase 2	Cysteine peptidase. Enzyme activity detected in leaf.	xylem cysteine peptidase 2;(source:Araport11)
AT1G20760.1	protein_coding	Calcium-binding EF hand family protein	EH domain containing protein.	Calcium-binding EF hand family protein;(source:Araport11)
AT1G20680.1	protein_coding	Protein of unknown function (DUF833)		transport/golgi organization-like protein (DUF833);(source:Araport11)
AT1G20770.1	protein_coding			coiled-coil protein;(source:Araport11)
AT1G20690.1	protein_coding	SWI-SNF-related chromatin binding protein		SWI-SNF-related chromatin binding protein;(source:Araport11)
AT1G20780.1	protein_coding	senescence-associated E3 ubiquitin ligase 1	Encodes a protein containing a U-box and an ARM domain. Homozygous mutant seedlings have a seedling lethal phenotype with widespread cell death lesions throughout the cotyledons and roots.	senescence-associated E3 ubiquitin ligase 1;(source:Araport11)
AT1G20700.1	protein_coding	WUSCHEL related homeobox 14	Encodes WOX14, a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain.  Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Functions in the shoot meristem organizing center to maintain the stem cells in an undifferentiated state. WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation.	WUSCHEL related homeobox 14;(source:Araport11)
AT1G20790.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G20710.1	protein_coding	WUSCHEL related homeobox 10	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain.  Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.	WUSCHEL related homeobox 10;(source:Araport11)
AT1G20800.1	protein_coding	F-box family protein	F-box family protein	F-box/associated interaction domain protein;(source:Araport11)
AT1G20720.1	protein_coding	RAD3-like DNA-binding helicase protein		RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G20810.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein		FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT1G20730.1	protein_coding	Protein of unknown function (DUF833)	Protein of unknown function (DUF833).Maternally expressed in some lineages.	transport/golgi organization-like protein, putative (DUF833);(source:Araport11)
AT1G20830.1	protein_coding	multiple chloroplast division site 1	Encodes MCD1 (MULTIPLE CHLOROPLAST DIVISION SITE 1).  Determines the site of chloroplast division in concert with MinD (AT5G24020).	multiple chloroplast division site 1;(source:Araport11)
AT1G21990.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G22060.1	protein_coding			sporulation-specific protein;(source:Araport11)
AT1G22000.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		LOW protein: F-box/FBD/LRR-like protein;(source:Araport11)
AT1G22070.1	protein_coding	TGA1A-related gene 3	Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.	transcription factor TGA3;(source:Araport11)
AT1G22120.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G22010.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G22080.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT1G22100.1	protein_coding	Inositol-pentakisphosphate 2-kinase family protein		Inositol-pentakisphosphate 2-kinase family protein;(source:Araport11)
AT1G22090.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein;(source:Araport11)
AT1G22020.1	protein_coding	serine hydroxymethyltransferase 6	Encodes a putative serine hydroxymethyltransferase.	serine hydroxymethyltransferase 6;(source:Araport11)
AT1G22110.1	protein_coding	structural constituent of ribosome		structural constituent of ribosome;(source:Araport11)
AT1G22030.1	protein_coding			BPS1-like protein;(source:Araport11)
AT1G22140.1	protein_coding			zinc finger CCCH domain protein;(source:Araport11)
AT1G22040.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G22150.1	protein_coding	sulfate transporter 1;3	sulfate transporter Sultr1;3	sulfate transporter 1;(source:Araport11)
AT1G22160.1	protein_coding	Protein of unknown function (DUF581)		senescence-associated family protein (DUF581);(source:Araport11)
AT1G22050.1	protein_coding	membrane-anchored ubiquitin-fold protein 6 precursor		membrane-anchored ubiquitin-fold protein 6 precursor;(source:Araport11)
AT1G22130.1	protein_coding	AGAMOUS-like 104	Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL104 is expressed in pollen.It forms heterodimers with other MICK family members (AGL65 and AGL30). Involved in late stages of pollen development and pollen tube growth.	AGAMOUS-like 104;(source:Araport11)
AT1G47210.1	protein_coding	cyclin-dependent protein kinase 3;2		cyclin-dependent protein kinase 3;(source:Araport11)
AT1G43060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-196 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G43090.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G43080.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G43100.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G43040.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G17930.1	protein_coding	Aminotransferase-like, plant mobile domain family protein		Aminotransferase-like, plant mobile domain family protein;(source:Araport11)
AT1G17830.1	protein_coding	Protein of unknown function (DUF789)		hypothetical protein (DUF789);(source:Araport11)
AT1G17800.1	protein_coding	early nodulin-like protein 22		early nodulin-like protein 22;(source:Araport11)
AT1G17940.1	protein_coding	Endosomal targeting BRO1-like domain-containing protein		Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT1G17840.1	protein_coding	white-brown complex homolog protein 11	Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin  transport to the extracellular matrix. The mRNA is cell-to-cell mobile.	white-brown complex-like protein;(source:Araport11)
AT1G17950.1	protein_coding	myb domain protein 52	putative transcription factor: R2R3-MYB transcription family	myb domain protein 52;(source:Araport11)
AT1G17850.1	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein		Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT1G17920.1	protein_coding	homeodomain GLABROUS 12	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  Together with HDG11, it is involved in trichome branching.	homeodomain GLABROUS 12;(source:Araport11)
AT1G17960.1	protein_coding	Threonyl-tRNA synthetase		Threonyl-tRNA synthetase;(source:Araport11)
AT1G17860.1	protein_coding	Kunitz family trypsin and protease inhibitor protein	Member of Kunitz trypsin inhibitor (KTI) family involved in plant defense response against spider mites.	Kunitz family trypsin and protease inhibitor protein;(source:Araport11)
AT1G17900.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1);(source:TAIR10)
AT1G17970.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G17870.1	protein_coding	ethylene-dependent gravitropism-deficient and yellow-green-like 3	S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442–454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171–179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.	ethylene-dependent gravitropism-deficient and yellow-green-like 3;(source:Araport11)
AT1G17980.1	protein_coding	poly(A) polymerase 1	Encodes a poly(A) polymerase. Located in the nucleus.  It limits founder-cell recruitment to organ primordia and suppresses the salicylic acid-independent immune response downstream of EDS1/PAD4.	poly(A) polymerase 1;(source:Araport11)
AT1G17770.1	protein_coding	SU(VAR)3-9 homolog 7	Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A paternally expressed imprinted gene.	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein;(source:Araport11)
AT1G17790.1	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT1G17880.1	protein_coding	basic transcription factor 3		basic transcription factor 3;(source:Araport11)
AT1G17810.1	protein_coding	beta-tonoplast intrinsic protein	beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete	beta-tonoplast intrinsic protein;(source:Araport11)
AT1G17890.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G17780.1	protein_coding		ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	transmembrane protein;(source:Araport11)
AT1G17820.1	protein_coding	Putative integral membrane protein conserved region (DUF2404)		testis-expressed sequence 2-like protein (DUF2404);(source:Araport11)
AT1G17910.1	protein_coding	Wall-associated kinase family protein		Wall-associated kinase family protein;(source:Araport11)
AT1G50140.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G50020.1	protein_coding			tubulin alpha-6 chain;(source:Araport11)
AT1G50010.1	protein_coding	tubulin alpha-2 chain	Encodes alpha-2,4 tubulin.  TUA2 and TUA4 encode identical proteins. The mRNA is cell-to-cell mobile.	tubulin alpha-2 chain;(source:Araport11)
AT1G50080.1	protein_coding			ribonuclease;(source:Araport11)
AT1G50000.1	protein_coding	methyltransferases		methyltransferase;(source:Araport11)
AT1G50110.1	protein_coding	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein	Encodes a cytosolic branched-chain aminotransferase that acts on Leu, Ile, Val and also on Met. Together with BCAT4 and BCAT3, it is involved in methionine salvage and glucosinolate biosynthesis.	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT1G49940.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G50090.1	protein_coding	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein		D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT1G49980.1	protein_coding	DNA/RNA polymerases superfamily protein		DNA/RNA polymerases superfamily protein;(source:Araport11)
AT1G50060.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT1G50050.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT1G50120.1	protein_coding		Encodes a Golgi-localized protein which regulates pollen tube growth. Required for TGN formation and Golgi structure maintenance.	immunoglobulin;(source:Araport11)
AT1G49970.1	protein_coding	CLP protease proteolytic subunit 1	Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).	CLP protease proteolytic subunit 1;(source:Araport11)
AT1G50040.1	protein_coding	Protein of unknown function (DUF1005)		formin-like protein, putative (DUF1005);(source:Araport11)
AT1G49990.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G49960.1	protein_coding	Xanthine/uracil permease family protein		Xanthine/uracil permease family protein;(source:Araport11)
AT1G50030.1	protein_coding	target of rapamycin	Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems.	target of rapamycin;(source:Araport11)
AT1G49950.1	protein_coding	telomere repeat binding factor 1	Encodes a telomeric DNA binding protein and Single Myb Histone (SMH) gene family member. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats.Mutations in TRB1 and TRB3 enhance the lhp1 mutant phenotype. Triple mutants are more strongly affected than the respective double mutants with lhp1. TRB1 binds non-H3K27me3 target genes predominantly at the transcription start sites and its presence increases the expression of several of these targets, enriched for functions of primary metabolism. At H3K27me3 target genes, TRB1 binding is more distributed across gene bodies and at extended promoter regions, corresponding to an enrichment of putative binding sites "RMCCTAR". At these genes, TRB1 particiaptes in the repression because several direct targets are further upregulated in trb1 lhp1 double mutants as compared to lhp1 mutants.	telomere repeat binding factor 1;(source:Araport11)
AT1G43670.1	protein_coding	Inositol monophosphatase family protein	Encodes a fructose-1,6-bisphosphatase. This enzyme, in addition to catalyzing the formation of fructose-6-phosphate for sucrose biosynthesis, appears to play a role in fructose-mediated signaling that is independent of its enzymatic activity. atcfbp-1/fins1 mutants have reduced photosynthetic rates, elevated levels of starch and reduced levels of sucrose during the day. Although the protein is expected to be cytosolic, a GFP-tagged version localizes to the cytoplasm and the nucleus. The mRNA is cell-to-cell mobile.	Inositol monophosphatase family protein;(source:Araport11)
AT1G43680.1	protein_coding			nucleic acid-binding/zinc ion-binding protein;(source:Araport11)
AT1G43690.1	protein_coding	ubiquitin interaction motif-containing protein		ubiquitin interaction motif-containing protein;(source:Araport11)
AT1G43730.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G43700.1	protein_coding	VIRE2-interacting protein 1	Encodes a VirE2-interacting protein.  VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half. Involved in osmosensory response. The mRNA is cell-to-cell mobile.	VIRE2-interacting protein 1;(source:Araport11)
AT1G43750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila);(source:TAIR10)
AT1G43710.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	Encodes a serine decarboxylase that is involved in ethanolamine metabolism and is crucial for plant growth.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT1G43740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila);(source:TAIR10)
AT1G43650.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G43720.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G43660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48290.1);(source:TAIR10)
AT1G25480.1	protein_coding	Aluminium activated malate transporter family protein	Encodes a phosphorylation-dependent anion channel that can mediate malate release from the vacuole and is required for stomatal closure in response to abscisic acid.	aluminum activated malate transporter family protein;(source:Araport11)
AT1G25490.1	protein_coding	ARM repeat superfamily protein	One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A;  Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem	ARM repeat superfamily protein;(source:Araport11)
AT1G25440.1	protein_coding	B-box type zinc finger protein with CCT domain		B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT1G25560.1	protein_coding	AP2/B3 transcription factor family protein	Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and  repression of expression of FT. Novel transcriptional regulator involved in ethylene signaling. Promoter bound by EIN3. EDF1 in turn, binds to promoter elements in ethylene responsive genes.	AP2/B3 transcription factor family protein;(source:Araport11)
AT1G25430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 8.0e-45 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G25520.1	protein_coding	Uncharacterized protein family (UPF0016)		Uncharacterized protein family (UPF0016);(source:Araport11)
AT1G25540.1	protein_coding	phytochrome and flowering time regulatory protein (PFT1)	Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions.  PFT1 promotes flowering in CO dependent and independent pathways and integrates several environmental stimuli, such as light quality and JA-dependent defenses.  Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions.  Also shown to be a Mediator subunit regulating jasmonate-dependent defense.	phytochrome and flowering time regulatory protein (PFT1);(source:Araport11)
AT1G25410.1	protein_coding	isopentenyltransferase 6	AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds	isopentenyltransferase 6;(source:Araport11)
AT1G25550.1	protein_coding	myb-like transcription factor family protein		myb-like transcription factor family protein;(source:Araport11)
AT1G25530.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G25400.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G25510.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G25390.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G25500.1	protein_coding	Plasma-membrane choline transporter family protein		Plasma-membrane choline transporter family protein;(source:Araport11)
AT1G25470.1	protein_coding	AP2 domain-containing transcription factor family protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	AP2 domain-containing transcription factor family protein;(source:Araport11)
AT1G25420.1	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT1G25460.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G25450.1	protein_coding	3-ketoacyl-CoA synthase 5	Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 5;(source:Araport11)
AT1G63420.1	protein_coding	Arabidopsis thaliana protein of unknown function (DUF821)		O-glucosyltransferase-like protein (DUF821);(source:Araport11)
AT1G63500.1	protein_coding	Protein kinase protein with tetratricopeptide repeat domain		kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT1G63410.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT1G63490.1	protein_coding	transcription factor jumonji (jmjC) domain-containing protein	Histone demethylase belonging to the KDM5/JARID1 family which plays crucial roles in response to dehydration stress and abscisic acid (ABA). Directly binds the chromatin of OPEN STOMATA 1 (OST1) and demethylated H3K4me3 for the regulation of OST1 mRNA abundance, thereby modulating the dehydration stress response.	transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT1G63580.1	protein_coding	Receptor-like protein kinase-related family protein	Encodes a plasma membrane-localized protein with two DUF26 domains and a GPI anchor domain.	Receptor-like protein kinase-related family protein;(source:Araport11)
AT1G63400.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G63480.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT1G63570.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT1G63470.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT1G63560.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Receptor-like protein kinase-related family protein (TAIR:AT1G63600.1)
AT1G63460.1	protein_coding	glutathione peroxidase 8	Encodes GPX8 (glutathione peroxidase 8). Involved in the suppression of oxidative damages in nucleus and cytosol. The mRNA is cell-to-cell mobile.	glutathione peroxidase 8;(source:Araport11)
AT1G63550.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT1G63450.1	protein_coding	root hair specific 8	Encodes a xyloglucan-specific galacturonosyltransferase (XUT1) that forms the beta-d-galactosyluronic acid-(1->2)-alpha-d-xylosyl linkage.	root hair specific 8;(source:Araport11)
AT1G63540.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G63440.1	protein_coding	heavy metal atpase 5	The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity,  which is especially dramatic in roots where  HMA5 is mostly expressed.	heavy metal atpase 5;(source:Araport11)
AT1G63350.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G63430.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G63590.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT1G63530.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G63520.1	protein_coding	Protein of unknown function (DUF3527)		hypothetical protein (DUF3527);(source:Araport11)
AT1G77380.1	protein_coding	amino acid permease 3	Amino acid permease which transports basic amino acids.	amino acid permease 3;(source:Araport11)
AT1G77390.1	protein_coding	CYCLIN A1;2	Encodes a core cell cycle gene involved in meiosis II during microsporogenesis. Recessive mutants exhibit delayed and asynchronous meiosis in pollen mother cell populations and uncoordinated nuclear division and cytokinesis resulting in dyad microspores.	CYCLIN A1;(source:Araport11)
AT1G77320.1	protein_coding	transcription coactivators	Mutant is defective in meiosis and produces abnormal microspores. Encodes a BRCT-domain-containing protein that could be specific to the meiotic cell cycle and that plays a crucial role in some DNA repair events independent of SPO11 DSB recombination repair.	transcription coactivator;(source:Araport11)
AT1G77410.1	protein_coding	beta-galactosidase 16		beta-galactosidase 16;(source:Araport11)
AT1G77330.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor)	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G77340.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G77350.1	protein_coding			keratinocyte-associated-like protein;(source:Araport11)
AT1G77400.1	protein_coding			extensin-like protein;(source:Araport11)
AT1G77360.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G77370.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT1G73950.1	protein_coding	Transmembrane Fragile-X-F-associated protein		Transmembrane Fragile-X-F-associated protein;(source:Araport11)
AT1G74030.1	protein_coding	enolase 1	Encodes the plastid-localized phosphoenolpyruvate enolase. Mutant plants have abnormal trichomes.	enolase 1;(source:Araport11)
AT1G73940.1	protein_coding			tumor necrosis factor receptor family protein;(source:Araport11)
AT1G74020.1	protein_coding	strictosidine synthase 2	Encodes AtSS-2 strictosidine synthase.	strictosidine synthase 2;(source:Araport11)
AT1G74110.1	protein_coding	cytochrome P450, family 78, subfamily A, polypeptide 10	member of CYP78A	cytochrome P450, family 78, subfamily A, polypeptide 10;(source:Araport11)
AT1G74010.1	protein_coding	Calcium-dependent phosphotriesterase superfamily protein		Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT1G74100.1	protein_coding	sulfotransferase 16	encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with different desulfoglucosinolates, the best substrate is indole-3-methyl-dsGS, followed by benzyl-dsGS. Expression was induced by wounding, jasmonate and ethylene stimulates.	sulfotransferase 16;(source:Araport11)
AT1G73930.1	protein_coding			polarity axis stabilization protein;(source:Araport11)
AT1G74000.1	protein_coding	strictosidine synthase 3	encodes a protein similar to strictosidine synthase, which is involved in the production of monoterpene indole alkaloids. This gene belongs to a family of 13 members in Arabidopsis.	strictosidine synthase 3;(source:Araport11)
AT1G74090.1	protein_coding	desulfo-glucosinolate sulfotransferase 18	encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.	desulfo-glucosinolate sulfotransferase 18;(source:Araport11)
AT1G73920.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G73990.1	protein_coding	signal peptide peptidase	Encodes a putative protease SppA (SppA).	signal peptide peptidase;(source:Araport11)
AT1G74080.1	protein_coding	myb domain protein 122	Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB122).	myb domain protein 122;(source:Araport11)
AT1G73910.1	protein_coding	actin-related proteins 4A	Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component  of chromatin remodeling complexes, involved in chromatin-mediated gene regulation.	actin-related proteins 4A;(source:Araport11)
AT1G73980.1	protein_coding	Phosphoribulokinase / Uridine kinase family	TTM1 is a triphosphate tunnel metalloenzyme that displays pyrophosphatase activity. It contains both a uridine kinase (UK) domain,CYTH domain, a coiled-coil domain and a transmembrane domain at the C-terminal Mutants show a delay in leaf senescence. Can functionally complement TTM1 and vise versa. (PMID:28733390)	Phosphoribulokinase / Uridine kinase family;(source:Araport11)
AT1G74070.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT1G73890.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G73970.1	protein_coding			obscurin-like protein;(source:Araport11)
AT1G74060.1	protein_coding	Ribosomal protein L6 family protein		Ribosomal protein L6 family protein;(source:Araport11)
AT1G73880.1	protein_coding	UDP-glucosyl transferase 89B1		UDP-glucosyl transferase 89B1;(source:Araport11)
AT1G73960.1	protein_coding	TBP-associated factor 2		TBP-associated factor 2;(source:Araport11)
AT1G74050.1	protein_coding	Ribosomal protein L6 family protein		Ribosomal protein L6 family protein;(source:Araport11)
AT1G73870.1	protein_coding	B-box type zinc finger protein with CCT domain		B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT1G74040.1	protein_coding	2-isopropylmalate synthase 1	Encodes an active Arabidopsis isopropylmalate synthase IPMS2.  Involved in leucine biosynthesis.  Do not participate in the chain elongation of glucosinolates.  Expressed constitutively throughout the plant. Loss of IPMS2 can be compensated by a second isopropylmalate synthase gene IPMS1 (At1g18500).	2-isopropylmalate synthase 1;(source:Araport11)
AT1G32230.1	protein_coding	WWE protein-protein interaction domain protein family	Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family.  Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants.  Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm. The mRNA is cell-to-cell mobile.	WWE protein-protein interaction domain protein family;(source:Araport11)
AT1G32150.1	protein_coding	basic region/leucine zipper transcription factor 68	Encodes a G group bZIP transcription factor family member that can bind cis elements with an ACGT core, such as G-box, Hex, C-box and As-1.  The protein is localized in the nucleus and can homodimerize and can heterodimerize with other G group members.	basic region/leucine zipper transcription factor 68;(source:Araport11)
AT1G32220.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G32130.1	protein_coding	Transcription elongation factor (TFIIS) family protein	The C-terminal portion of this protein has high homology to the C-termini of the IWS1 (Interacts With Spt6) proteins found in yeast and humans. Interacts with transcription factor BES1. Involved in brassinosteroid-regulated gene expression.	Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT1G32120.1	protein_coding			serine/threonine-protein phosphatase 7 long form-like protein;(source:Araport11)
AT1G32190.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G32100.1	protein_coding	pinoresinol reductase 1	Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.	pinoresinol reductase 1;(source:Araport11)
AT1G32090.1	protein_coding	early-responsive to dehydration stress protein (ERD4)		early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT1G32180.1	protein_coding	cellulose synthase-like D6	encodes a gene similar to cellulose synthase	cellulose synthase-like D6;(source:Araport11)
AT1G32170.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 30	xyloglucan endotransglycosylase-related protein (XTR4) The mRNA is cell-to-cell mobile.	xyloglucan endotransglucosylase/hydrolase 30;(source:Araport11)
AT1G32200.1	protein_coding	phospholipid/glycerol acyltransferase family protein	Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol.	phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT1G32160.1	protein_coding	Protein of unknown function (DUF760)		beta-casein (DUF760);(source:Araport11)
AT1G32210.1	protein_coding	Defender against death (DAD family) protein	Encodes protein involved in suppression of apoptosis. Complements a mammalian apoptosis suppressor mutation.	Defender against death (DAD family) protein;(source:Araport11)
AT1G32140.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G13020.1	protein_coding	eukaryotic initiation factor 4B2	Encodes eIF4B2, eukaryotic initiation factor 4B2.	eukaryotic initiation factor 4B2;(source:Araport11)
AT1G12990.1	protein_coding	beta-1,4-N-acetylglucosaminyltransferase family protein		beta-1,4-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G13100.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 29	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 29;(source:Araport11)
AT1G13030.1	protein_coding	sphere organelles protein-related	Encodes a plant coilin, a protein that in other organisms is a major structural scaffolding protein necessary for Cajal body formation, composition and activity.  It has been shown to bind both U1 and U1 snRNAs in vitro.	sphere organelles protein-like protein;(source:Araport11)
AT1G13180.1	protein_coding	Actin-like ATPase superfamily protein	Mutant has defect in trichome cell expansion and  actin organization resulting in a distorted trichome phenotype.	Actin-like ATPase superfamily protein;(source:Araport11)
AT1G13110.1	protein_coding	cytochrome P450, family 71 subfamily B, polypeptide 7	member of CYP71B The mRNA is cell-to-cell mobile.	cytochrome P450, family 71 subfamily B, polypeptide 7;(source:Araport11)
AT1G13040.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G13190.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G13120.1	protein_coding			nucleoporin GLE1-like protein;(source:Araport11)
AT1G13050.1	protein_coding			proline-rich receptor-like kinase;(source:Araport11)
AT1G13200.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G13130.1	protein_coding	Cellulase (glycosyl hydrolase family 5) protein		Cellulase (glycosyl hydrolase family 5) protein;(source:Araport11)
AT1G13060.1	protein_coding	20S proteasome beta subunit E1	Encodes 20S proteasome beta subunit PBE1 (PBE1).	20S proteasome beta subunit E1;(source:Araport11)
AT1G13210.1	protein_coding	autoinhibited Ca2+/ATPase II		autoinhibited Ca2+/ATPase II;(source:Araport11)
AT1G13070.1	pseudogene		putative cytochrome P450	pseudogene of cytochrome P450;(source:Araport11)
AT1G13140.1	protein_coding	cytochrome P450, family 86, subfamily C, polypeptide 3	member of CYP86C	cytochrome P450, family 86, subfamily C, polypeptide 3;(source:Araport11)
AT1G13220.1	protein_coding	nuclear matrix constituent protein-related	Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. Member of a small gene family in Arabidopsis containing 4 proteins (LNC1-4 or CRWN 1-4) with redundant functions in protection from oxidative damage, control of nuclear morphology and degradation of ABI5.	nuclear matrix constituent protein-like protein;(source:Araport11)
AT1G13230.1	protein_coding	Leucine-rich repeat (LRR) family protein	Encodes a leucine-rich repeat protein pii-2.  Located in the endoplasmic reticulum/plasma membrane continuum in Arabidopsis roots.  Required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G13150.1	protein_coding	cytochrome P450, family 86, subfamily C, polypeptide 4	member of CYP86C	cytochrome P450, family 86, subfamily C, polypeptide 4;(source:Araport11)
AT1G12980.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes an AP2/ERF protein, is expressed in a subdomain of meristem stem cells, in lateral organ anlagen, and transiently in the distal domain of organ primordia. It is a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ESR1). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.   Can confer cytokinin-independent shoot formation and causes severe meristem defects when overexpressed in Arabidopsis root explants.  Involved in controlling embryogenesis and embryo patterning by interaction with PHAVOLUTA.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G13160.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G13080.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 2	cytochrome P450 monooxygenase	cytochrome P450, family 71, subfamily B, polypeptide 2;(source:Araport11)
AT1G13000.1	protein_coding	Protein of unknown function (DUF707)		transmembrane protein, putative (DUF707);(source:Araport11)
AT1G13170.1	protein_coding	OSBP(oxysterol binding protein)-related protein 1D		OSBP(oxysterol binding protein)-related protein 1D;(source:Araport11)
AT1G13090.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 28	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 28;(source:Araport11)
AT1G05700.1	protein_coding	Leucine-rich repeat transmembrane protein kinase protein		Leucine-rich repeat transmembrane protein kinase protein;(source:Araport11)
AT1G05720.1	protein_coding	selenoprotein family protein		selenoprotein family protein;(source:Araport11)
AT1G05630.1	protein_coding	Endonuclease/exonuclease/phosphatase family protein	Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3.  Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light–stimulated  increase in cytosolic calcium ion.	Endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT1G05570.1	protein_coding	callose synthase 1	Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.	callose synthase 1;(source:Araport11)
AT1G05730.1	protein_coding	Eukaryotic protein of unknown function (DUF842)		FAM136A-like protein (DUF842);(source:Araport11)
AT1G05640.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT1G05650.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G05740.1	protein_coding	Eukaryotic protein of unknown function (DUF842)		FAM136A-like protein (DUF842);(source:Araport11)
AT1G05660.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G05580.1	protein_coding	cation/H+ exchanger 23	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 23;(source:Araport11)
AT1G05670.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G05710.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G05680.1	protein_coding	Uridine diphosphate glycosyltransferase 74E2	Encodes a UDP-glucosyltransferase, UGT74E2,  that acts on IBA (indole-3-butyric acid) and affects auxin homeostasis. The transcript and protein levels of this enzyme are strongly induced by H2O2 and may allow integration of ROS (reactive oxygen species) and auxin signaling. This enzyme can also transfer glycosyl groups to several compounds related to the explosive TNT when this synthetic compound is taken up from the environment.	Uridine diphosphate glycosyltransferase 74E2;(source:Araport11)
AT1G05590.1	protein_coding	beta-hexosaminidase 2	Encodes a protein with &#946;-hexosaminidase activity (the enzyme is active with p-nitrophenyl-&#946;-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-&#946;-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.	beta-hexosaminidase 2;(source:Araport11)
AT1G05690.1	protein_coding	BTB and TAZ domain protein 3	BTB and TAZ domain protein. Acts redunantly with BT1 and BT2 during female gametophyte development. Acts with BT2 during male gametophyte development.	BTB and TAZ domain protein 3;(source:Araport11)
AT1G05600.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G05610.1	protein_coding	ADP-glucose pyrophosphorylase small subunit 2	Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.	ADP-glucose pyrophosphorylase small subunit 2;(source:Araport11)
AT1G05620.1	protein_coding	uridine-ribohydrolase  2	Encodes a cytosolic inosine nucleoside hydrolase. It forms a heterocomplex with NSH1 with almost two orders of magnitude higher catalytic efficiency for xanthosine hydrolysis than observed for NSH1 alone. Transcript levels for this gene are elevated in older leaves suggesting that it may play a role in purine catabolism during senescence.	uridine-ribohydrolase 2;(source:Araport11)
AT1G78370.1	protein_coding	glutathione S-transferase TAU 20	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 20;(source:Araport11)
AT1G78360.1	protein_coding	glutathione S-transferase TAU 21	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 21;(source:Araport11)
AT1G78340.1	protein_coding	glutathione S-transferase TAU 22	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 22;(source:Araport11)
AT1G78320.1	protein_coding	glutathione S-transferase TAU 23	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 23;(source:Araport11)
AT1G78230.1	protein_coding	Outer arm dynein light chain 1 protein		Outer arm dynein light chain 1 protein;(source:Araport11)
AT1G78310.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT1G78410.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT1G78300.1	protein_coding	general regulatory factor 2	G-box binding factor GF14 omega encoding a 14-3-3 protein The mRNA is cell-to-cell mobile.	general regulatory factor 2;(source:Araport11)
AT1G78440.1	protein_coding	Arabidopsis thaliana gibberellin 2-oxidase 1	Encodes a gibberellin 2-oxidase that acts on C19 gibberellins.	gibberellin 2-beta-dioxygenase;(source:Araport11)
AT1G78390.1	protein_coding	nine-cis-epoxycarotenoid dioxygenase 9	Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.	nine-cis-epoxycarotenoid dioxygenase 9;(source:Araport11)
AT1G78280.1	protein_coding	transferases, transferring glycosyl groups		transferases, transferring glycosyl groups;(source:Araport11)
AT1G78430.1	protein_coding	ROP interactive partner 2	Encodes RIP2 (ROP interactive partner 2), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants).	ROP interactive partner 2;(source:Araport11)
AT1G78380.1	protein_coding	glutathione S-transferase TAU 19	Encodes a glutathione transferase that is a member of Tau GST gene family. Expression is induced by drought stress, oxidative stress, and high doses of auxin and cytokinin. naming convention according to Wagner et al. (2002) The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.	glutathione S-transferase TAU 19;(source:Araport11)
AT1G78270.1	protein_coding	UDP-glucosyl transferase 85A4		UDP-glucosyl transferase 85A4;(source:Araport11)
AT1G78420.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G78260.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G78400.1	protein_coding	Pectin lyase-like superfamily protein	PGX2 is a cell wall protein that codes for a polygalacturonase.	Pectin lyase-like superfamily protein;(source:Araport11)
AT1G78240.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes TSD2 (TUMOROUS SHOOT DEVELOPMENT2), a putative methyltransferase with an essential role in cell adhesion and coordinated plant development.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G28240.1	protein_coding	Protein of unknown function (DUF616)		strawberry notch protein (DUF616);(source:Araport11)
AT1G28320.1	protein_coding	protease-related	Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH.	protease-like protein;(source:Araport11)
AT1G28230.1	protein_coding	purine permease 1	Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.	purine permease 1;(source:Araport11)
AT1G28310.1	protein_coding	Dof-type zinc finger DNA-binding family protein		Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT1G28220.1	protein_coding	purine permease 3	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 3;(source:Araport11)
AT1G28350.1	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT1G28300.1	protein_coding	AP2/B3-like transcriptional factor family protein	Transcription factor that contains a B3 domain, a DNA-binding motif unique to plants and characteristic of several transcription factors. Plays critical roles both early and late during embryo development. LEC2 RNA accumulates primarily during seed development. LEC2 is required for the maintenance of suspensor morphology, specification of cotyledon identity, progression through the maturation phase, and suppression of premature germination. It establishes a cellular environment sufficient to initiate embryo development - ectopic, postembryonic expression of LEC2 in transgenic plants induces the formation of somatic embryos and other organ-like structures and often confers embryonic characteristics to seedlings and to reproductive and vegetative organs of mature plants.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT1G28210.1	protein_coding	DNAJ heat shock family protein	DnaJ homolog AtJ1 (atj)	DNAJ heat shock family protein;(source:Araport11)
AT1G28290.1	protein_coding	arabinogalactan protein 31	Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development.	arabinogalactan protein 31;(source:Araport11)
AT1G28200.1	protein_coding	FH interacting protein 1	VirF-interacting protein FIP1	FH interacting protein 1;(source:Araport11)
AT1G28190.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G28270.1	protein_coding	ralf-like 4	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF4 and RALF19 act redundantly in the pollen tube to regulate pollen tube growth.	ralf-like 4;(source:Araport11)
AT1G28280.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT1G28260.1	protein_coding	Telomerase activating protein Est1		Telomerase activating protein Est1;(source:Araport11)
AT1G28180.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		DEAD-box ATP-dependent RNA helicase-like protein;(source:Araport11)
AT1G28170.1	protein_coding	sulphotransferase 7		sulfotransferase 7;(source:Araport11)
AT1G28330.1	protein_coding	dormancy-associated protein-like 1	dormancy-associated protein (DRM1)	dormancy-associated protein-like 1;(source:Araport11)
AT1G28250.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G71240.1	protein_coding	Plant protein of unknown function (DUF639)		chromosome-partitioning protein, putative (DUF639);(source:Araport11)
AT1G71230.1	protein_coding	COP9-signalosome 5B	Encodes a subunit of the COP9 complex, similar to  JAB1, a specific mammalian coactivator of AP-1 transcription. Involved in protein deneddylation. Double mutants with CSN5A are constitutively photomorphogenic (de-etiolated) and have abnormal auxin responses.	COP9-signalosome 5B;(source:Araport11)
AT1G71260.1	protein_coding	WHIRLY 2	Encodes WHY2, a homolog of the potato p24 protein.  It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to mitochondria and not the nucleus.  WHY2 is a member of the Whirly family proteins present mainly in the plant kingdom performing various activities related to DNA metabolism.  Crystal structure of Solanum tuberosum WHY2, a close homolog of Arabidopsis WHY2, reveal that Whirly proteins bind to single strand DNA to promote accurate repair of DNA double-strand breaks over an error-prone repair pathway.	WHIRLY 2;(source:Araport11)
AT1G71220.1	protein_coding	UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups	Encodes UDP-glucose:glycoprotein glucosyltransferase. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the  presence of elf18, and EFR accumulation and signalling.	EMS-MUTAGENIZED BRI1 SUPPRESSOR 1;(source:Araport11)
AT1G71330.1	protein_coding	non-intrinsic ABC protein 5	member of NAP subfamily	non-intrinsic ABC protein 5;(source:Araport11)
AT1G71320.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G71310.1	protein_coding	cobalt ion binding	A protein coding gene with unknown function.  The 5’ UTR and the first two exons and introns of this gene overlap with a RNA coding gene TER1. TER1 (GenBank accession no. HQ401284) encodes a putative template sequence (5&#8242;-CTAAACCCTA-3&#8242;) corresponding to 1.5 copies of the Arabidopsis telomere repeat (PNAS 2011, 108:73-78).	cobalt ion binding protein;(source:Araport11)
AT1G71300.1	protein_coding	Vps52 / Sac2 family 		Vps52 / Sac2 family;(source:Araport11)
AT1G71340.1	protein_coding	PLC-like phosphodiesterases superfamily protein	Encodes a member of the glycerophosphodiester phosphodiesterase (GDPD) family.	PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT1G71290.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G71250.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G71280.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT1G71270.1	protein_coding	Vps52 / Sac2 family 	Encodes a homolog of the yeast Vps52p/SAC2.  Involved in pollen tube germination and growth. Located in multiple endomembrane organelles including the golgi. The yeast protein has been shown to be located at the late Golgi and to function in a complex involved in retrograde trafficking of vesicles between the early endosomal compartment and the trans-Golgi network.	Vps52 / Sac2 family;(source:Araport11)
AT1G24170.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Encodes a protein with  putative galacturonosyltransferase activity.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT1G24250.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G24180.1	protein_coding	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein	Arabidopsis thaliana pyruvate dehydrogenase E1a-like subunit. 81% identical to a previously characterized Arabidopsis mitochondrial PDH E1a-subunit, At1g59900. Serine 296 phosphorylation of IAR4 has critical function in root hair formation and root development. Changing Ser296 in IAR4 to Ala resulted in a phenotype intermediate between mutant and wild-type, while substitution to Asp was either lethal or caused an extreme dwarf phenotype.	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein;(source:Araport11)
AT1G24260.1	protein_coding	K-box region and MADS-box transcription factor family protein	Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G24350.1	protein_coding	Acid phosphatase/vanadium-dependent haloperoxidase-related protein		Acid phosphatase/vanadium-dependent haloperoxidase-related protein;(source:Araport11)
AT1G24190.1	protein_coding	SIN3-like 3	Enhances AtERF7-mediated  transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19.	SIN3-like 3;(source:Araport11)
AT1G24100.1	protein_coding	UDP-glucosyl transferase 74B1	Encodes a UDP-glucose:thiohydroximate S-glucosyltransferase, involved in glucosinolate biosynthesis	UDP-glucosyl transferase 74B1;(source:Araport11)
AT1G24110.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT1G24200.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G24270.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G24280.1	protein_coding	glucose-6-phosphate dehydrogenase 3	Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.	glucose-6-phosphate dehydrogenase 3;(source:Araport11)
AT1G24310.1	protein_coding			nuclear pore complex protein;(source:Araport11)
AT1G24210.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G24220.1	protein_coding	paired amphipathic helix repeat-containing protein		paired amphipathic helix repeat-containing protein;(source:Araport11)
AT1G24290.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT1G24120.1	protein_coding	ARG1-like 1	encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined.	ARG1-like 1;(source:Araport11)
AT1G24230.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G24300.1	protein_coding	GYF domain-containing protein		GYF domain-containing protein;(source:Araport11)
AT1G24130.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G24240.1	protein_coding	Ribosomal protein L19 family protein		Ribosomal protein L19 family protein;(source:Araport11)
AT1G24320.1	protein_coding	Six-hairpin glycosidases superfamily protein		Six-hairpin glycosidases superfamily protein;(source:Araport11)
AT1G24140.1	protein_coding	Matrixin family protein		Matrixin family protein;(source:Araport11)
AT1G24330.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G24150.1	protein_coding	formin homologue 4	Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin. Member of family of cytoskeletal-interacting proteins which have the ability to stimulate actin nucleation and barbed-end capping through the combined activity of conserved formin-homology 1 (FH1) and formin-homology 2 (FH2) domains. FORMIN4 is a spatial feedback element in a multi-layered, temporally defined sequence of cytoskeletal response, contributing to the distribution of actin filaments at the dynamic cell wall appositions boundary and to the outcomes of pre-invasion defense.	formin homologue 4;(source:Araport11)
AT1G24340.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein	A locus involved in embryogenesis. Mutations in this locus result in embryo lethality. The mRNA is cell-to-cell mobile.	FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT1G24160.1	protein_coding			triadin;(source:Araport11)
AT1G28370.1	protein_coding	ERF domain protein 11	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	ERF domain protein 11;(source:Araport11)
AT1G28420.1	protein_coding	homeobox-1		homeobox-1;(source:Araport11)
AT1G28360.1	protein_coding	ERF domain protein 12	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	ERF domain protein 12;(source:Araport11)
AT1G28400.1	protein_coding			GATA zinc finger protein;(source:Araport11)
AT1G28410.1	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT1G28390.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G28380.1	protein_coding	MAC/Perforin domain-containing protein	This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots. The mRNA is cell-to-cell mobile.	MAC/Perforin domain-containing protein;(source:Araport11)
AT1G28460.1	protein_coding	AGAMOUS-like 59		AGAMOUS-like 59;(source:Araport11)
AT1G28450.1	protein_coding	AGAMOUS-like 58		AGAMOUS-like 58;(source:Araport11)
AT1G28510.1	protein_coding	Optic atrophy 3 protein (OPA3)		Optic atrophy 3 protein (OPA3);(source:Araport11)
AT1G28440.1	protein_coding	HAESA-like 1		HAESA-like 1;(source:Araport11)
AT1G28500.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT1G28430.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 24	member of CYP705A	cytochrome P450, family 705, subfamily A, polypeptide 24;(source:Araport11)
AT1G28490.1	protein_coding	syntaxin of plants 61	Encodes SYP61, one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. SYP61 and SYP121 coordinate the trafficking of plasma membrane aquaporin PIP2;7 to modulate the cell membrane water permeability.	syntaxin of plants 61;(source:Araport11)
AT1G28480.1	protein_coding	Thioredoxin superfamily protein	Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state.  GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription.  GRX480 transcription is SA-inducible and requires NPR1.  Maybe involved in SA/JA cross-talk. It has also been shown to interact with the transcription factor TGA2 and suppress ORA59 promoter activity.	Thioredoxin superfamily protein;(source:Araport11)
AT1G28470.1	protein_coding	NAC domain containing protein 10		NAC domain containing protein 10;(source:Araport11)
AT1G72850.1	protein_coding	Disease resistance protein (TIR-NBS class)		Disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G73100.1	protein_coding	SU(VAR)3-9 homolog 3	Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET  domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There  are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have  an additional conserved SRA domain.	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein;(source:Araport11)
AT1G72950.1	protein_coding	Disease resistance protein (TIR-NBS class)		Disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G72860.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G73030.1	protein_coding	SNF7 family protein	Encodes an ESCRT-related protein: CHMP1A/AT1G73030; CHMP1B/AT1G17730.  CHMP1A and B mediate multivesicular body sorting of auxin carriers and are required for plant development.  ESCRT: Endosomal Sorting Complexes Required For Transport machinery; CHMP: Charged Multivesicular Body Protein/Chromatin Modifying Protein.	SNF7 family protein;(source:Araport11)
AT1G72960.1	protein_coding	Root hair defective 3 GTP-binding protein (RHD3)		Root hair defective 3 GTP-binding protein (RHD3);(source:Araport11)
AT1G73170.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G73040.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G72970.1	protein_coding	Glucose-methanol-choline (GMC) oxidoreductase family protein	Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.	Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT1G72870.1	protein_coding	Disease resistance protein (TIR-NBS class)		Disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G73050.1	protein_coding	Glucose-methanol-choline (GMC) oxidoreductase family protein		Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT1G72980.1	protein_coding	LOB domain-containing protein 7		LOB domain-containing protein 7;(source:Araport11)
AT1G72880.1	protein_coding	Survival protein SurE-like phosphatase/nucleotidase		Survival protein SurE-like phosphatase/nucleotidase;(source:Araport11)
AT1G73060.1	protein_coding	Low  PSII Accumulation 3		Low PSII Accumulation 3;(source:Araport11)
AT1G72990.1	protein_coding	beta-galactosidase 17		beta-galactosidase 17;(source:Araport11)
AT1G72890.1	protein_coding	Disease resistance protein (TIR-NBS class)		Disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G73110.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G73080.1	protein_coding	PEP1 receptor 1	Encodes a leucine-rich repeat receptor kinase.  Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. The mRNA is cell-to-cell mobile.	PEP1 receptor 1;(source:Araport11)
AT1G72840.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class)		Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G72900.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain-containing protein		Toll-Interleukin-Resistance (TIR) domain-containing protein;(source:Araport11)
AT1G72910.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain-containing protein		Toll-Interleukin-Resistance (TIR) domain-containing protein;(source:Araport11)
AT1G72920.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT1G72930.1	protein_coding	toll/interleukin-1 receptor-like	Toll/interleukin-1 receptor-like protein (TIR) mRNA,	toll/interleukin-1 receptor-like protein;(source:Araport11)
AT1G73000.1	protein_coding	PYR1-like 3	Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.	PYR1-like 3;(source:Araport11)
AT1G73090.1	protein_coding			WD repeat protein;(source:Araport11)
AT1G73010.1	protein_coding	phosphate starvation-induced gene 2	Encodes PPsPase1, a pyrophosphate-specific phosphatase catalyzing the specific cleavage of pyrophosphate (Km 38.8 uM) with an alkaline catalytic pH optimum. Expression is upregulated in the shoot of cax1/cax3 mutant.	inorganic pyrophosphatase 1;(source:Araport11)
AT1G72940.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain-containing protein		Toll-Interleukin-Resistance (TIR) domain-containing protein;(source:Araport11)
AT1G73020.1	protein_coding			anoctamin-like protein;(source:Araport11)
AT1G16350.1	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT1G16360.1	protein_coding	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein		LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein;(source:Araport11)
AT1G16440.1	protein_coding	root hair specific 3	Member of AGC VIIIa Kinase gene family.	root hair specific 3;(source:Araport11)
AT1G16370.1	protein_coding	organic cation/carnitine transporter 6		organic cation/carnitine transporter 6;(source:Araport11)
AT1G16460.1	protein_coding	rhodanese homologue 2	encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast.  Can also act as a mercaptopyruvate sulfurtransferase.	rhodanese homologue 2;(source:Araport11)
AT1G16380.1	protein_coding	Cation/hydrogen exchanger family protein	member of Putative Na+/H+ antiporter family	Cation/hydrogen exchanger family protein;(source:Araport11)
AT1G16300.1	protein_coding	glyceraldehyde-3-phosphate dehydrogenase of plastid 2	Encodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development, dwarfism and sterility. GAPCps are important for the synthesis of serine in roots.	glyceraldehyde-3-phosphate dehydrogenase of plastid 2;(source:Araport11)
AT1G16230.1	protein_coding	Target SNARE coiled-coil domain protein		Target SNARE coiled-coil domain protein;(source:Araport11)
AT1G16470.1	protein_coding	proteasome subunit PAB1	Encodes 20S proteasome subunit PAB1 (PAB1).	proteasome subunit PAB1;(source:Araport11)
AT1G16390.1	protein_coding	organic cation/carnitine transporter 3		organic cation/carnitine transporter 3;(source:Araport11)
AT1G16310.1	protein_coding	Cation efflux family protein	Cation efflux family protein which affects ABA-JA crosstalk and susceptibility to Mamestra brassicae herbivory.	Cation efflux family protein;(source:Araport11)
AT1G16240.1	protein_coding	syntaxin of plants 51	Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.	syntaxin of plants 51;(source:Araport11)
AT1G16480.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G16210.1	protein_coding			coiled-coil protein;(source:Araport11)
AT1G16320.1	protein_coding	Uncharacterized conserved protein (DUF2358)		plant/protein (DUF2358);(source:Araport11)
AT1G16250.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G16490.1	protein_coding	myb domain protein 58	Member of the R2R3 factor gene family.	myb domain protein 58;(source:Araport11)
AT1G16400.1	protein_coding	cytochrome P450, family 79, subfamily F, polypeptide 2	Encodes cytochrome P450 CYP79F2.	cytochrome P450, family 79, subfamily F, polypeptide 2;(source:Araport11)
AT1G16330.1	protein_coding	cyclin b3;1	core cell cycle genes	cyclin b3;(source:Araport11)
AT1G16260.1	protein_coding	Wall-associated kinase family protein		Wall-associated kinase family protein;(source:Araport11)
AT1G16220.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G16340.1	protein_coding	Aldolase superfamily protein	Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).	Aldolase superfamily protein;(source:Araport11)
AT1G16410.1	protein_coding	cytochrome p450 79f1	member of CYP79F The mRNA is cell-to-cell mobile.	cytochrome p450 79f1;(source:Araport11)
AT1G16270.1	protein_coding	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain		kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT1G16500.1	protein_coding			filamentous hemagglutinin transporter;(source:Araport11)
AT1G16420.1	protein_coding	metacaspase 8	Encodes a metacaspase (cysteine-type endopeptidase) that is involved in promoting programmed cell death in response to hydrogen peroxide (H2O2), UV light, and methyl viologen (MV). Transcript levels rise in response to UV-C, H2O2, and MV. In vitro assays demonstrate that this enzyme has a preference for cleaving after an arginine residue, and it has a pH optimum of 8.0.	metacaspase 8;(source:Araport11)
AT1G16280.1	protein_coding	RNA helicase 36	Encodes a putative DEAD-box RNA helicase.  Essential for female gametogenesis.	RNA helicase 36;(source:Araport11)
AT1G16510.1	protein_coding	SAUR-like auxin-responsive protein family 	Encodes a clade III SAUR gene with a distinctive expression pattern in root meristems.  It is normally expressed in the quiescent center and cortex/endodermis initials and upon auxin stimulation, the expression is found in the endodermal layer.  Overexpression studies suggest roles in cell expansion and auxin transport.	SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G16430.1	protein_coding	Surfeit locus protein 5 subunit 22 of Mediator complex		Surfeit locus protein 5 subunit 22 of Mediator complex;(source:Araport11)
AT1G16290.1	protein_coding			transglycosylase;(source:Araport11)
AT1G25290.1	protein_coding	RHOMBOID-like protein 10		RHOMBOID-like protein 10;(source:Araport11)
AT1G25370.1	protein_coding	Protein of unknown function (DUF1639)		hypothetical protein (DUF1639);(source:Araport11)
AT1G25280.1	protein_coding	tubby like protein 10	Member of TLP family	tubby like protein 10;(source:Araport11)
AT1G25360.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G25270.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G25350.1	protein_coding	glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative		glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS;(source:Araport11)
AT1G25260.1	protein_coding	Ribosomal protein L10 family protein		Ribosomal protein L10 family protein;(source:Araport11)
AT1G25340.1	protein_coding	myb domain protein 116	putative transcription factor (MYB116)	myb domain protein 116;(source:Araport11)
AT1G25250.1	protein_coding	indeterminate(ID)-domain 16	Encodes a transcription factor that, together with IDD14 and IDD15, regulates auxin biosynthesis and transport and thus aerial organ morphogenesis and gravitropic responses . IDD16 also binds to the SPCH promoter and regulates stomata initiation.	indeterminate(ID)-domain 16;(source:Araport11)
AT1G25330.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes CESTA, a positive regulator of brassinosteroid biosynthesis.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G25240.1	protein_coding	ENTH/VHS/GAT family protein		ENTH/VHS/GAT family protein;(source:Araport11)
AT1G25320.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G25230.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT1G25310.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding family protein		basic helix-loop-helix (bHLH) DNA-binding family protein;(source:Araport11)
AT1G25220.1	protein_coding	anthranilate synthase beta subunit 1	Catalyzes the first step of tryptophan biosynthesis: Chorismate L-Glutamine = Anthranilate Pyruvate L-Glutamate. Functions as a heterocomplex with anthranilate synthase alpha subunit (ASA1 or ASA2).	anthranilate synthase beta subunit 1;(source:Araport11)
AT1G25300.1	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT1G06720.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G06820.1	protein_coding	carotenoid isomerase	Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.	carotenoid isomerase;(source:Araport11)
AT1G06920.1	protein_coding	ovate family protein 4	Encodes OFP4, a member of the plant specific ovate family proteins. Members of this family have been shown to bind to KNOX and BELL- like TALE class homeodomain proteins. OFP4 interacts with KNAT7 to regulate secondary cell wall formation.	ovate family protein 4;(source:Araport11)
AT1G06800.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G06910.1	protein_coding	TRF-like 7	Arabidopsis thaliana myb family transcription factor (At1g06910)	TRF-like 7;(source:Araport11)
AT1G06790.1	protein_coding	RNA polymerase Rpb7 N-terminal domain-containing protein	Encodes a subunit of RNA polymerase III involved in maintaining global RNA homeostasis, not just that of genes transcribed by RNA pol III.	RNA polymerase Rpb7 N-terminal domain-containing protein;(source:Araport11)
AT1G06900.1	protein_coding	Insulinase (Peptidase family M16) family protein		Insulinase (Peptidase family M16) family protein;(source:Araport11)
AT1G06780.1	protein_coding	galacturonosyltransferase 6	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 6;(source:Araport11)
AT1G06890.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	UXT3 is a member of the NST-KT subfamily  of nucleotide/sugar transporters. It is localized to the golgi and functions as a UDP-Xyl transporter.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G06770.1	protein_coding	DREB2A-interacting protein 1	Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.	DREB2A-interacting protein 1;(source:Araport11)
AT1G06870.1	protein_coding	Peptidase S24/S26A/S26B/S26C family protein		Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT1G06810.1	protein_coding			endonuclease/glycosyl hydrolase;(source:Araport11)
AT1G06760.1	protein_coding	winged-helix DNA-binding transcription factor family protein		winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT1G06850.1	protein_coding	basic leucine-zipper 52		basic leucine-zipper 52;(source:Araport11)
AT1G06710.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G06740.1	protein_coding		Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1), AT2G30640 (MUG2), AT1G06740 (MUG3), AT5G16505 (MUG4), AT3G06940 (MUG5), AT5G48965 (MUG6), AT3G05850 (MUG7) and AT5G34853 (MUG8).	MuDR family transposase;(source:Araport11)
AT1G06730.1	protein_coding	pfkB-like carbohydrate kinase family protein		pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT1G06750.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G06830.1	protein_coding	Glutaredoxin family protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2. CEPD1 is a non secreted polypeptide that is highly similar to  CEPD2 which is another member of a novel family related to glutaredoxins. It is induced by nitrogen starvation. It acts downstream of the CEP1 peptide in systemic N-demand signalling .The RNA is expressed in the phloem of cotelydon and leaf vasculature but the peptide is graft transmissible, traveling from the shoot to the root.	Glutaredoxin family protein;(source:Araport11)
AT1G06840.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G06930.1	protein_coding			TPRXL;(source:Araport11)
AT1G50750.1	protein_coding	Plant mobile domain protein family		aminotransferase-like, mobile domain protein;(source:Araport11)
AT1G50740.1	protein_coding	Transmembrane proteins 14C		Transmembrane proteins 14C;(source:Araport11)
AT1G50730.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G69030.1	protein_coding	BSD domain-containing protein		BSD domain-containing protein;(source:Araport11)
AT1G69040.1	protein_coding	ACT domain repeat 4	ACT-domain containing protein involved in feedback regulation of amino acid metabolism	ACT domain repeat 4;(source:Araport11)
AT1G69160.1	protein_coding			suppressor;(source:Araport11)
AT1G69070.1	protein_coding			nucleolar-like protein;(source:Araport11)
AT1G69080.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT1G69090.1	protein_coding	Protein of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT1G69100.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G69050.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G69120.1	protein_coding	K-box region and MADS-box transcription factor family protein 	Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G69140.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT1G69150.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G66780.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G66870.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G66770.1	protein_coding	Nodulin MtN3 family protein		Nodulin MtN3 family protein;(source:Araport11)
AT1G66860.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein		Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT1G66680.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	unknown function	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G66760.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G66850.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G66750.1	protein_coding	CDK-activating kinase 4	Encodes a CDK-activating kinase that interacts with SPT5,  a regulator of transcription and histone methylation.	CDK-activating kinase 4;(source:Araport11)
AT1G66740.1	protein_coding	ASF1 like histone chaperone	Located on the SSL2 region of Arabidopsis thaliana, which is homeologous to the Brassica S locus for self incompatibility. Expressed in both vegetative and reproductive organs suggesting AtSP7 might not be involved in self incompatibility.  Its expression is regulated during cell cycle progression through E2F transcription factors.  The protein interacts with acetylated histones H3 and H4 and HAM acetyltransferases, proteins known to be involved in cell cycle control and DNA repair.	ASF1 like histone chaperone;(source:Araport11)
AT1G66820.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT1G66730.1	protein_coding	DNA LIGASE 6	Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair.	DNA LIGASE 6;(source:Araport11)
AT1G66830.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G66810.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein	Encodes a tandem CCCH zinc finger (TZF) protein that can bind DNA and RNA, function as a transcriptional activator, and is involved in secondary wall biosynthesis.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G66720.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G66800.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Its expression is enriched in non-root hair cells (compared to root hair cells) and this enrichment is associated with increase in the transcription-associated mark trimethylation of H3 lysine 4 (H3K4me3) and decrease in the Polycomb silencing-associated mark trimethylation of H3 lysine 27 (H3K27me3) in non-root hair cells relative to root-hair cells. Protein sequence is similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase. The mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G66840.1	protein_coding	Plant protein of unknown function (DUF827)	Encodes a coiled-coil protein WEB2 (weak chloroplast movement under blue light 2, also named PMI2/plastid movement impaired 2). Involved in chloroplast avoidance movement under intermediate and high light intensities. WEB2, together with another coiled-coil protein WEB1 (AT2G26570), maintains the chloroplast photorelocation movement velocity.	PLASTID MOVEMENT IMPAIRED protein (DUF827);(source:Araport11)
AT1G66700.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	A member of the Arabidopsis SABATH methyltransferase gene family.  Encodes PXMT1, a methyltransferase that methylates 1,7-paraxanthine.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G66690.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G41830.1	protein_coding	SKU5-similar 6		SKU5-similar 6;(source:Araport11)
AT1G41860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);contains InterPro domain Retrotransposon gag protein;(source:TAIR10)
AT1G41920.1	protein_coding	General transcription factor 2-related zinc finger protein		General transcription factor 2-related zinc finger protein;(source:Araport11)
AT1G41910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 2.1e-130 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT1G41900.1	transposable_element_gene	transposable element gene	pseudogene of myosin heavy chain-related	transposable_element_gene;(source:Araport11)
AT1G41930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 3.8e-118 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT1G41840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.2e-23 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT1G41880.1	protein_coding	Ribosomal protein L35Ae family protein		Ribosomal protein L35Ae family protein;(source:Araport11)
AT1G41870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1);(source:TAIR10)
AT1G70660.1	protein_coding	MMS ZWEI homologue 2	MMZ2/UEV1B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ2/UEV1B and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ2/UEV1B transcripts are found in most plant organs, but not in the pollen or in seedlings 6 hours or 2 days post-germination. The transcript levels do not appear to be stress-inducible. The mRNA is cell-to-cell mobile.	MMS ZWEI homologue 2;(source:Araport11)
AT1G70750.1	protein_coding	Protein of unknown function, DUF593		myosin-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT1G70650.1	protein_coding	Ran BP2/NZF zinc finger-like superfamily protein		Ran BP2/NZF zinc finger-like superfamily protein;(source:Araport11)
AT1G70740.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G70730.1	protein_coding	Phosphoglucomutase/phosphomannomutase family protein	Encodes a cytosolic phosphoglucomutase (PGM).  Two Arabidopsis PGM proteins (AT1G70730/PGM2 and AT1G23190/PGM3) have high sequence similarities and redundant functions. Mature plants possessing a single cPGM allele had a major reduction in cPGM activity. Whereas pgm2 and pgm3 single mutants are undistinguishable from the wild type, loss of both PGM2 and PGM3 severely impairs male and female gametophyte development.	Phosphoglucomutase/phosphomannomutase family protein;(source:Araport11)
AT1G70720.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G70710.1	protein_coding	glycosyl hydrolase 9B1	endo-1,4-beta-glucanase. Involved in cell elongation.	glycosyl hydrolase 9B1;(source:Araport11)
AT1G70700.1	protein_coding	TIFY domain/Divergent CCT motif family protein	JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. The mRNA is cell-to-cell mobile.	TIFY domain/Divergent CCT motif family protein;(source:Araport11)
AT1G70690.1	protein_coding	Receptor-like protein kinase-related family protein	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	Receptor-like protein kinase-related family protein;(source:Araport11)
AT1G70680.1	protein_coding	Caleosin-related family protein		Caleosin-related family protein;(source:Araport11)
AT1G70670.1	protein_coding	Caleosin-related family protein	The gene encodes a stress-responsive and OB-associated non-seed caleosin-like protein. It plays a negative regulator role in ABA signaling.	Caleosin-related family protein;(source:Araport11)
AT1G67130.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G67110.1	protein_coding	cytochrome P450, family 735, subfamily A, polypeptide 2		cytochrome P450, family 735, subfamily A, polypeptide 2;(source:Araport11)
AT1G67120.1	protein_coding	ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding	Represents a homolog of the yeast MDN gene, which encodes a non-ribosomal protein involved in the maturation and assembly of the 60S ribosomal subunit. In Arabidopsis, it is essential for female gametogenesis progression.	midasin-like protein;(source:Araport11)
AT1G67140.1	protein_coding	HEAT repeat-containing protein		HEAT repeat-containing protein;(source:Araport11)
AT1G67150.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT1G67160.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)	Member of a family of proteins containing an F-box domain at the N-terminal region and three kelch repeats at the C-terminal region. Involved in BR signaling. Co-suppressed KIB1,2,3,4 lines have a dwarf phenotype and resemble BR receptor mutants.	F-box/kelch-repeat protein, putative (DUF295);(source:Araport11)
AT1G67170.1	protein_coding			sarcolemmal membrane-associated protein;(source:Araport11)
AT1G67180.1	protein_coding	zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein		zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein;(source:Araport11)
AT1G67190.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G32480.1	protein_coding	isocitrate dehydrogenase IV	Predicted to encode a protein related isocitrate dehydrogenases, but it appears to be missing the sequences encoding the  N-terminal portion of the protein.	isocitrate dehydrogenase IV;(source:Araport11)
AT1G32400.1	protein_coding	tobamovirus multiplication 2A	TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.	tobamovirus multiplication 2A;(source:Araport11)
AT1G32490.1	protein_coding	RNA helicase family protein	Encodes a homolog of the yeast PRP2 protein, one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing. Involved in ABI4-regulated ABA signaling under high glucose condition in early seedling growth.	RNA helicase family protein;(source:Araport11)
AT1G32410.1	protein_coding	Vacuolar protein sorting 55 (VPS55) family protein		Vacuolar protein sorting 55 (VPS55) family protein;(source:Araport11)
AT1G32500.1	protein_coding	non-intrinsic ABC protein 6	Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins.  Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms.  This grouping is arbitrary and will likely change upon acquisition of further data.	non-intrinsic ABC protein 6;(source:Araport11)
AT1G32420.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G32510.1	protein_coding	NAC domain containing protein 11		NAC domain containing protein 11;(source:Araport11)
AT1G32430.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G32520.1	protein_coding			TLDc domain protein;(source:Araport11)
AT1G32440.1	protein_coding	plastidial pyruvate kinase 3	encodes a chloroplast pyruvate kinase beta subunit. The enzyme is less active than the other chloroplast pyruvate kinase beta subunit encoded by AT5G52920. Involved in seed oil biosynthesis. Can partially complement the AT5G52920 mutant.	plastidial pyruvate kinase 3;(source:Araport11)
AT1G32530.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G32450.1	protein_coding	nitrate transporter 1.5	Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to high and low concentrations of nitrate. Not involved in nitrate uptake. Expressed in root pericycle cells under the control of MYB59. Also functions as a proton-coupled H+/K+ antiporter for K+ loading into the xylem.	nitrate transporter 1.5;(source:Araport11)
AT1G32370.1	protein_coding	tobamovirus multiplication 2B	Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta. The mRNA is cell-to-cell mobile.	tobamovirus multiplication 2B;(source:Araport11)
AT1G32460.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G32380.1	protein_coding	phosphoribosyl pyrophosphate (PRPP) synthase 2	Encodes a P-dependent phosphoribosyl pyrophosphate (PRPP) synthase.	phosphoribosyl pyrophosphate (PRPP) synthase 2;(source:Araport11)
AT1G32470.1	protein_coding	Single hybrid motif superfamily protein		Single hybrid motif superfamily protein;(source:Araport11)
AT1G32390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1);(source:TAIR10)
AT1G51520.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G51510.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G51420.1	protein_coding	sucrose-phosphatase 1		sucrose-phosphatase 1;(source:Araport11)
AT1G51500.1	protein_coding	ABC-2 type transporter family protein	Encodes an ABC transporter involved in cuticular wax biosynthesis. Lines carrying recessive mutations in this locus have weakly glaucous stem surface, and relative elevated secondary alcohols and ketones.	ABC-2 type transporter family protein;(source:Araport11)
AT1G51410.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G51490.1	protein_coding	beta glucosidase 36	This locus encodes a myrosinase. Arabidopsis thaliana ecotype Col-0 contains a non-functional copy but some other (not all) ecotypes contain a functional copy (reference: PubMed ID 26907263).	beta glucosidase 36;(source:Araport11)
AT1G51480.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		disease resistance protein (CC-NBS-LRR class) family protein;(source:Araport11)
AT1G51470.1	protein_coding	beta glucosidase 35	Encodes a myrosinase.	beta glucosidase 35;(source:Araport11)
AT1G51550.1	protein_coding	Kelch repeat-containing F-box family protein		Kelch repeat-containing F-box family protein;(source:Araport11)
AT1G51460.1	protein_coding	ABC-2 type transporter family protein	ABCG13 encodes a member of the ATP-binding cassette (ABC) transporter family protein. Mutants show defects in petal elongation resulting in a folded petal phenotype.	ABC-2 type transporter family protein;(source:Araport11)
AT1G51540.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G51530.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G51450.1	protein_coding	TRAUCO	Nuclear protein required for early embryogenesis. Encodes a structural core component of a COMPASS-like H3K4 histone methylation complex that is also involved in the timing of the floral transition and in leaf morphogenesis.  Mutants are decreased in H3K4 histone trimethylation.	TRAUCO;(source:Araport11)
AT1G51440.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G51430.1	protein_coding			cTAGE family protein;(source:Araport11)
AT1G52100.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G52110.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G51990.1	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT1G52120.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G52040.1	protein_coding	myrosinase-binding protein 1	Encodes myrosinase-binding protein expressed in flowers.	myrosinase-binding protein 1;(source:Araport11)
AT1G52000.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G52130.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G52090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1);(source:TAIR10)
AT1G52010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.8e-81 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G52050.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G52060.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G52020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT1G52140.1	protein_coding			Avr9/Cf-9 rapidly elicited protein;(source:Araport11)
AT1G52070.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G52030.1	protein_coding	myrosinase-binding protein 2	Similar to  myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.	myrosinase-binding protein 2;(source:Araport11)
AT1G52150.1	protein_coding	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein	Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein;(source:Araport11)
AT1G52080.1	protein_coding	actin binding protein family		actin binding protein family;(source:Araport11)
AT1G51980.1	protein_coding	Insulinase (Peptidase family M16) protein		Insulinase (Peptidase family M16) protein;(source:Araport11)
AT1G65550.1	protein_coding	Xanthine/uracil permease family protein		Xanthine/uracil permease family protein;(source:Araport11)
AT1G65560.1	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT1G65490.1	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT1G65510.1	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT1G65570.1	protein_coding	Pectin lyase-like superfamily protein	Encodes a glycosyl hydrolase 28 (GH28) family polygalacturonase (PG) protein. Involved in root cap development.	Pectin lyase-like superfamily protein;(source:Araport11)
AT1G65540.1	protein_coding	LETM1-like protein		LETM1-like protein;(source:Araport11)
AT1G65580.1	protein_coding	Endonuclease/exonuclease/phosphatase family protein		Endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT1G65590.1	protein_coding	beta-hexosaminidase 3	Encodes a protein with beta-hexosaminidase activity. Located on the plasma membrane.	beta-hexosaminidase 3;(source:Araport11)
AT1G65610.1	protein_coding	Six-hairpin glycosidases superfamily protein		Six-hairpin glycosidases superfamily protein;(source:Araport11)
AT1G65620.1	protein_coding	Lateral organ boundaries (LOB) domain family protein	required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation.   Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.	Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT1G65480.1	protein_coding	PEBP (phosphatidylethanolamine-binding protein) family protein	FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). Together with TSF, it plays an antagonistic role to TFL1 in the determination of inflorescence meristem identity. FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.	PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11)
AT1G65500.1	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT1G65520.1	protein_coding	delta(3), delta(2)-enoyl CoA isomerase 1	encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation	delta(3), delta(2)-enoyl CoA isomerase 1;(source:Araport11)
AT1G80330.1	protein_coding	gibberellin 3-oxidase 4	Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3&#946;-hydroxylation of GA20 into GA29.	gibberellin 3-oxidase 4;(source:Araport11)
AT1G80390.1	protein_coding	indole-3-acetic acid inducible 15	Member of a multigene family of Auxin responsive genes.	indole-3-acetic acid inducible 15;(source:Araport11)
AT1G80340.1	protein_coding	gibberellin 3-oxidase 2	Encodes a protein with gibberellin 3 &#946;-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.	gibberellin 3-oxidase 2;(source:Araport11)
AT1G80400.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G80270.1	protein_coding	PENTATRICOPEPTIDE REPEAT 596		PENTATRICOPEPTIDE REPEAT 596;(source:Araport11)
AT1G80280.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G80290.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	a member of the Glycosyltransferase Family 64 (according to CAZy Database)	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT1G80350.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	encodes a p60 katanin protein that is expressed throughout  the plant.  Required for the specification of cell fates from early in development (in the meristem)  through differentiation and for normal postmitotic organization of cortical microtubules into transverse arrays in root epidermis cells. Mutants display cytoskeletal defects.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G80300.1	protein_coding	nucleotide transporter 1	Encodes an ATP/ADP transporter. The mRNA is cell-to-cell mobile.	nucleotide transporter 1;(source:Araport11)
AT1G80360.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	Encodes a methionine-specific aminotransferase that uses the ethylene biosynthetic intermediate methionine as an  amino donor and the auxin biosynthetic intermediate indole-3-pyruvic acid as an amino acceptor to produce L-tryptophan  and 2-oxo-4-methylthiobutyric acid. These actions allow VAS1 to coordinate both auxin and ethylene biosynthesis.  It functions downstream of TAA1/SAV3 but upstream of YUCs to negatively modulate IAA biosynthesis directly by altering the 3-IPA pool.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT1G80310.1	protein_coding	sulfate transmembrane transporters	MOT2 encodes a molybdate transporter which locates to the vacuolar membrane. Loss-of-function (knock out) mutants show elevated molydate levels in rosette leaves and in fully senescent leaves, but decreased MoO4 levels in seeds. Under conditions of molybdate deficiency leaves from mot2::tDNA mutants show strongly reduced nitrate reductase activity. The mot2 gene is slightly expressed in young and mature leaves, but strongly in senescing leaves. This observation points to a function of MOT2 in molybdate transfer from leaves to seeds during plant senescence.	sulfate transmembrane transporter;(source:Araport11)
AT1G80370.1	protein_coding	Cyclin A2;4	Encodes a A2-type cyclin.  Contributes to the fine-tuning of local proliferation during plant development.	Cyclin A2;(source:Araport11)
AT1G80320.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G80380.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G36110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.2e-59 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G36130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.2e-84 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G36120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.8e-283 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G36080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287;(source:TAIR10)
AT1G36090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.2e-74 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G36100.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT1G36150.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G20470.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G20460.1	protein_coding			NADH-ubiquinone oxidoreductase chain;(source:Araport11)
AT1G20450.1	protein_coding	Dehydrin family protein	Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.	Dehydrin family protein;(source:Araport11)
AT1G20440.1	protein_coding	cold-regulated 47	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late  embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant. Regulated by heat shock.	cold-regulated 47;(source:Araport11)
AT1G20520.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		DUF241 domain protein, putative (DUF241);(source:Araport11)
AT1G20430.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G20510.1	protein_coding	OPC-8:0 CoA ligase1		OPC-8:0 CoA ligase1;(source:Araport11)
AT1G20410.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT1G20500.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G20400.1	protein_coding	Protein of unknown function (DUF1204)		hypothetical protein (DUF1204);(source:Araport11)
AT1G20490.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G20390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G20480.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G31930.1	protein_coding	extra-large GTP-binding protein 3	Encodes XLG3 (extra-large G protein 3) that shows significant similarity to the G protein alpha subunit in its C terminal region.  Involved in the regulation of root morphological and growth responses.	extra-large GTP-binding protein 3;(source:Araport11)
AT1G31830.1	protein_coding	Amino acid permease family protein	Encodes POLYAMINE UPTAKE TRANSPORTER 2, an amino acid permease family protein.	Amino acid permease family protein;(source:Araport11)
AT1G31920.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G31820.1	protein_coding	Amino acid permease family protein	Encodes POLYAMINE UPTAKE TRANSPORTER 1, an amino acid permease family protein.	Amino acid permease family protein;(source:Araport11)
AT1G31910.1	protein_coding	GHMP kinase family protein		GHMP kinase family protein;(source:Araport11)
AT1G31810.1	protein_coding	Formin Homology 14	Encodes the Type II Arabidopsis formin14.  Interacts with microtubules and microfilaments to regulate cell division.	Formin Homology 14;(source:Araport11)
AT1G31800.1	protein_coding	cytochrome P450, family 97, subfamily A, polypeptide 3	Encodes a protein with &#946;-ring carotenoid hydroxylase activity. The mRNA is cell-to-cell mobile.	cytochrome P450, family 97, subfamily A, polypeptide 3;(source:Araport11)
AT1G31880.1	protein_coding	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as regulation of auxin-responsive gene expression. Also involved in cytokinin-mediated inhibition of lateral root initiation.  A loss-of-function allele, named brx-2 in   Rodrigues et al. (2009) Plant Physiol. but changed to brx-3 to resolve nomenclature conflict (Li et al. Planta 2009:229(3):593-603), shows enhanced response to ABA-mediated inhibition of root growth. Plasma-membrane-associated element of a molecular rheostat that modulates auxin flux through developing protophloem sieve elements (PPSEs) while interacting with PAX, thereby timing PPSE differentiation. Dampens PIN-mediated auxin efflux.	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein;(source:Araport11)
AT1G31790.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G31870.1	protein_coding		Ortholog of yeast BUD13 RES complex protein. Functions in pre mRNA processing of RNAs expressed in embryos.	pre-mRNA-splicing factor of RES complex protein;(source:Araport11)
AT1G31780.1	protein_coding			oligomeric golgi complex subunit;(source:Araport11)
AT1G31860.1	protein_coding	histidine biosynthesis bifunctional protein (HISIE)	encodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities.	histidine biosynthesis bifunctional protein (HISIE);(source:Araport11)
AT1G31850.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G31840.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G12270.1	protein_coding	stress-inducible protein, putative	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	stress-inducible protein;(source:Araport11)
AT1G12410.1	protein_coding	CLP protease proteolytic subunit 2	Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).	CLP protease proteolytic subunit 2;(source:Araport11)
AT1G12420.1	protein_coding	ACT domain repeat 8		ACT domain repeat 8;(source:Araport11)
AT1G12310.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT1G12430.1	protein_coding	armadillo repeat kinesin 3	Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved  in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations.  It accumulates at the preprophase band (PPB) in a cell-cycle and microtubule-dependent manner and is most highly expressed in cells where the placement of the division plane (early embryogenesis, stomatal lineages) is critical.	armadillo repeat kinesin 3;(source:Araport11)
AT1G12320.1	protein_coding	Protein of unknown function (DUF1442)		ankyrin repeat/KH domain protein (DUF1442);(source:Araport11)
AT1G12440.1	protein_coding	A20/AN1-like zinc finger family protein		A20/AN1-like zinc finger family protein;(source:Araport11)
AT1G12340.1	protein_coding	Cornichon family protein		Cornichon family protein;(source:Araport11)
AT1G12390.1	protein_coding	Cornichon family protein		Cornichon family protein;(source:Araport11)
AT1G12360.1	protein_coding	Sec1/munc18-like (SM) proteins superfamily	encodes a Sec1 protein and expressed throughout the plant. physically interacts with Syntaxin1 and is required for cytokinesis.	Sec1/munc18-like (SM) proteins superfamily;(source:Araport11)
AT1G12370.1	protein_coding	photolyase 1	encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The  uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele	photolyase 1;(source:Araport11)
AT1G12400.1	protein_coding	Nucleotide excision repair, TFIIH, subunit TTDA		Nucleotide excision repair, TFIIH, subunit TTDA;(source:Araport11)
AT1G12350.1	protein_coding	4-phospho-panto-thenoylcysteine synthetase	At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4’-phospho-N-pantothenoylcysteine (PPC)	4-phospho-panto-thenoylcysteine synthetase;(source:Araport11)
AT1G12380.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G12450.1	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT1G12460.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G12330.1	protein_coding			cyclin-dependent kinase-like protein;(source:Araport11)
AT1G12300.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	RFL2 is a pentatricopeptide repeat protein involved in mitochondrial RNA processing.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G12290.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G12280.1	protein_coding	LRR and NB-ARC domains-containing disease resistance protein	Encodes a NB-LRR protein SUMM2 involved in defense response to bacterium.	LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT1G23730.1	protein_coding	beta carbonic anhydrase 3		beta carbonic anhydrase 3;(source:Araport11)
AT1G23740.1	protein_coding	Oxidoreductase, zinc-binding dehydrogenase family protein	AOR is an alkenal/one oxidoreductase that acts on compounds with unsaturated alpha,beta-carbonyls. The activity of this enzyme with a number of substrates, including acrolein and 3-buten-2-one, was demonstrated in vitro using a truncated form of the protein that lacked approximately 80 of the first amino acids. This protein appears to localize to the chloroplast where it likely helps to maintain the photosynthetic process by detoxifying reactive carbonyls formed during lipid peroxidation.	Oxidoreductase, zinc-binding dehydrogenase family protein;(source:Araport11)
AT1G23750.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G23760.1	protein_coding	BURP domain-containing protein	Encodes aromatic rich glycoprotein JP630.	BURP domain-containing protein;(source:Araport11)
AT1G23770.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G23780.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G23790.1	protein_coding	Plant protein of unknown function (DUF936)		dicer-like protein (DUF936);(source:Araport11)
AT1G23800.1	protein_coding	aldehyde dehydrogenase 2B7	Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.	aldehyde dehydrogenase 2B7;(source:Araport11)
AT1G23810.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G23680.1	protein_coding	Domain of unknown function (DUF220)		hypothetical protein (DUF220);(source:Araport11)
AT1G23690.1	protein_coding	Domain of unknown function DUF220		hypothetical protein (Domain of unknown function DUF220);(source:Araport11)
AT1G23700.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G23710.1	protein_coding	Protein of unknown function (DUF1645)		hypothetical protein (DUF1645);(source:Araport11)
AT1G23720.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT1G23820.1	protein_coding	spermidine synthase 1	Spermidine synthase.	spermidine synthase;(source:Araport11)
AT1G23830.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G23840.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G18780.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G18840.1	protein_coding	IQ-domain 30	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 30;(source:Araport11)
AT1G18770.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G18760.1	protein_coding	Zinc finger, C3HC4 type (RING finger) family protein		Zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT1G18670.1	protein_coding	Protein kinase superfamily protein	Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence.  Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.	Protein kinase superfamily protein;(source:Araport11)
AT1G18750.1	protein_coding	AGAMOUS-like 65	Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.	AGAMOUS-like 65;(source:Araport11)
AT1G18870.1	protein_coding	isochorismate synthase 2	Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410).	isochorismate synthase 2;(source:Araport11)
AT1G18740.1	protein_coding	Protein of unknown function (DUF793)	DUF793 domain containing protein. Expression is induced by cold. Loss of function mutations are more sensitive to freezing and have reduced levels of CBFs. May act by preventing degradation of CBFs.	ROH1, putative (DUF793);(source:Araport11)
AT1G18860.1	protein_coding	WRKY DNA-binding protein 61	member of WRKY Transcription Factor; Group II-b	WRKY DNA-binding protein 61;(source:Araport11)
AT1G18850.1	protein_coding		PCP2 encodes a novel plant specific protein that is co-expressed with components of pre-rRNA processing complex. Co-localizes with NuGWD1 and SWA1.	hypothetical protein;(source:Araport11)
AT1G18720.1	protein_coding	Protein of unknown function (DUF962)		ER membrane protein, putative (DUF962);(source:Araport11)
AT1G18730.1	protein_coding	NDH dependent flow 6	likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. The mRNA is cell-to-cell mobile.	NDH dependent flow 6;(source:Araport11)
AT1G18700.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G18830.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G18800.1	protein_coding	NAP1-related protein 2	Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M  and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.  Plant mutated in both NRP1 and NRP2 genes show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. NRP genes act synergistically with NAP1 genes in promoting somatic homologous recombination.	NAP1-related protein 2;(source:Araport11)
AT1G18790.1	protein_coding	RWP-RK domain-containing protein		RWP-RK domain-containing protein;(source:Araport11)
AT1G18880.1	protein_coding	Major facilitator superfamily protein	Encodes a low-af&#64257;nity plasma membrane nitrate transporter expressed in the companion cells of root phloem.	Major facilitator superfamily protein;(source:Araport11)
AT1G18810.1	protein_coding	phytochrome kinase substrate-related		phytochrome kinase substrate-like protein;(source:Araport11)
AT1G18710.1	protein_coding	myb domain protein 47	Member of the R2R3 factor gene family.	myb domain protein 47;(source:Araport11)
AT1G18680.1	protein_coding	HNH endonuclease domain-containing protein		HNH endonuclease domain-containing protein;(source:Araport11)
AT1G18660.1	protein_coding	zinc finger (C3HC4-type RING finger) family protein	Membrane localized protein of unknown function. Involved in negative regulation of immune response. Mutants have increased resistance to pathogens.	zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G18690.1	protein_coding	Galactosyl transferase GMA12/MNN10 family protein		Galactosyl transferase GMA12/MNN10 family protein;(source:Araport11)
AT1G73590.1	protein_coding	Auxin efflux carrier family protein	Encodes an auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients.  Loss of function severely affects organ initiation, pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers, resulting in the formation of a naked inflorescence stem.  PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations.  In roots, the protein mainly resides at the basal end of the vascular cells, but weak signals can be detected in the epidermis and the cortex.  Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany, and may direct, different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins.	Auxin efflux carrier family protein;(source:Araport11)
AT1G73580.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G73570.1	protein_coding	HCP-like superfamily protein		HCP-like superfamily protein;(source:Araport11)
AT1G52700.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52560.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G52630.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G52550.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G52540.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G52450.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT1G52690.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT1G52610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.0e-18 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G52660.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G52620.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Mitochondrial pentatricopeptide repeat protein required for stabilizing nad1 transcripts.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G52530.1	protein_coding			Hus1-like protein;(source:Araport11)
AT1G52680.1	protein_coding	late embryogenesis abundant protein-related / LEA protein-related		late embryogenesis abundant protein-related / LEA protein-like protein;(source:Araport11)
AT1G52600.1	protein_coding	Peptidase S24/S26A/S26B/S26C family protein		Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT1G52520.1	protein_coding	FAR1-related sequence 6		FAR1-related sequence 6;(source:Araport11)
AT1G52670.1	protein_coding	Single hybrid motif superfamily protein		Single hybrid motif superfamily protein;(source:Araport11)
AT1G52470.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52590.1	protein_coding	Putative thiol-disulphide oxidoreductase DCC		Putative thiol-disulfide oxidoreductase DCC;(source:Araport11)
AT1G52440.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52510.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52460.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52650.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI superfamily protein;(source:Araport11)
AT1G52580.1	protein_coding	RHOMBOID-like protein 5		RHOMBOID-like protein 5;(source:Araport11)
AT1G52500.1	protein_coding	MUTM homolog-1	Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Has abasic lyase activity and does not exhibit significant cleavage of a double-stranded oligonucleotide that contained 8-oxo-guanine. Sequence similarity to atmmh-1.	MUTM homolog-1;(source:Araport11)
AT1G52490.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT1G52640.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G52570.1	protein_coding	phospholipase D alpha 2	member of C2-PLD subfamily	phospholipase D alpha 2;(source:Araport11)
AT1G01360.1	protein_coding	regulatory component of ABA receptor 1	Encodes RCAR1 (regulatory components of ABA receptor).  Interacts with and regulates the type 2C protein phosphatases (PP2Cs) ABI1 and ABI2.  Functions as abscisic acid sensor. The mRNA is cell-to-cell mobile.	regulatory component of ABA receptor 1;(source:Araport11)
AT1G01260.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	bHLH13 interacts with JAZ proteins, and functions redundantly with bHLH3, bHLH14 and bHLH17 to negatively regulate jasmonate responses.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G01240.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G01370.1	protein_coding	Histone superfamily protein	Encodes a centromere-identifying  protein histone H3 variant. Localized at centromeres in both mitotic and  meiotic cells. Aurora3 phosphorylates CENH3 at S65; this post-translational modification is required for the proper development of the floral meristem.	Histone superfamily protein;(source:Araport11)
AT1G01250.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G01280.1	protein_coding	cytochrome P450, family 703, subfamily A, polypeptide 2	member of CYP703A  CYP703A2 is expressed specifically in anthers of land plants, catalyzing the in-chain hydroxylation at the C-7 position of medium-chain saturated fatty acids (lauric acid in-chain hydroxylase) which is involved in pollen development (sporopollenin synthesis).	cytochrome P450, family 703, subfamily A, polypeptide 2;(source:Araport11)
AT1G01390.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G01290.1	protein_coding	cofactor of nitrate reductase and xanthine dehydrogenase 3	COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined, except in roots. Appears to have targeting signals for chloroplast or mitochondria	cofactor of nitrate reductase and xanthine dehydrogenase 3;(source:Araport11)
AT1G01380.1	protein_coding	Homeodomain-like superfamily protein	ETC1 is involved in trichome and root hair patterning in Arabidopsis.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G01400.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G01300.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G01200.1	protein_coding	RAB GTPase homolog A3		RAB GTPase homolog A3;(source:Araport11)
AT1G01440.1	protein_coding	Protein of unknown function (DUF3133)		hypothetical protein (DUF3133);(source:Araport11)
AT1G01410.1	protein_coding	pumilio 22	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 22;(source:Araport11)
AT1G01310.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT1G01210.1	protein_coding	DNA-directed RNA polymerase, subunit M, archaeal		DNA-directed RNA polymerase, subunit M, archaeal;(source:Araport11)
AT1G01320.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes REDUCED CHLOROPLAST COVERAGE 1 (REC1). Located in the nucleus and cytosol. Contributes to establishing the size of the chloroplast compartment.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G01420.1	protein_coding	UDP-glucosyl transferase 72B3		UDP-glucosyl transferase 72B3;(source:Araport11)
AT1G01430.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 25	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers.Functions as a mannan O-acetyltransferase, catalyzing the 2-O and 3-O-monoacetylation of mannosyl residues A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 25;(source:Araport11)
AT1G01340.1	protein_coding	cyclic nucleotide gated channel 10	member of Cyclic nucleotide gated channel family	cyclic nucleotide gated channel 10;(source:Araport11)
AT1G01230.1	protein_coding	ORMDL family protein	ORM1 is an ER localized orosomucoid-like protein involved in sphingolipid homeostasis.	ORMDL family protein;(source:Araport11)
AT1G01220.1	protein_coding	L-fucokinase/GDP-L-fucose pyrophosphorylase	Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.	L-fucokinase/GDP-L-fucose pyrophosphorylase;(source:Araport11)
AT1G01350.1	protein_coding	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein		Zinc finger (CCCH-type/C3HC4-type RING finger) family protein;(source:Araport11)
AT1G19940.1	protein_coding	glycosyl hydrolase 9B5		glycosyl hydrolase 9B5;(source:Araport11)
AT1G19930.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G19920.1	protein_coding	Pseudouridine synthase/archaeosine transglycosylase-like family protein	encodes a chloroplast form of ATP sulfurylase.	Pseudouridine synthase/archaeosine transglycosylase-like family protein;(source:Araport11)
AT1G19910.1	protein_coding	ATPase, F0/V0 complex, subunit C protein	vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2)	ATPase, F0/V0 complex, subunit C protein;(source:Araport11)
AT1G19900.1	protein_coding	glyoxal oxidase-related protein	RUBY encodes a secreted  galactose oxidase involved in  cell wall modification.	glyoxal oxidase-related protein;(source:Araport11)
AT1G19890.1	protein_coding	male-gamete-specific histone H3	histone 3.3, male-gamete-specific expression. Direct target promoter of the male germline-specific transcription factor DUO1.	male-gamete-specific histone H3;(source:Araport11)
AT1G19880.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT1G19870.1	protein_coding	IQ-domain 32	Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 32;(source:Araport11)
AT1G19860.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G19840.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G19850.1	protein_coding	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related	Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder.	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein;(source:Araport11)
AT1G16970.1	protein_coding	KU70 homolog	Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of  the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity.	ATP-dependent DNA helicase 2 subunit Ku70-like protein;(source:Araport11)
AT1G32590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-230 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G32720.1	protein_coding	Cytochrome C oxidase polypeptide VIB family protein		Cytochrome C oxidase polypeptide VIB family protein;(source:Araport11)
AT1G32610.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G32730.1	protein_coding			electron carrier/iron ion-binding protein;(source:Araport11)
AT1G32630.1	protein_coding			FAM50A-like protein;(source:Araport11)
AT1G32740.1	protein_coding	SBP (S-ribonuclease binding protein) family protein		SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT1G32680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35880.1);(source:TAIR10)
AT1G32750.1	protein_coding	HAC13 protein (HAC13)	This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation.	HAC13 protein (HAC13);(source:Araport11)
AT1G32660.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G32760.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT1G32650.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G32690.1	protein_coding			DUF740 family protein;(source:Araport11)
AT1G32770.1	protein_coding	NAC domain containing protein 12	Encodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. Expressed in the procambium of stem inflorescences and root. May act as a negative regulator of secondary wall thickening in xylary fibers. Acts redundantly with NST1 to control development of secondary walls in siliques.	NAC domain containing protein 12;(source:Araport11)
AT1G32640.1	protein_coding	Basic helix-loop-helix (bHLH) DNA-binding family protein	Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif and interacts with Jasmonate ZIM-domain proteins. MYC2 interacts with EIN3 and EIL1 to repress hook curvature and resistance to Botrytis cinera.Its transcription is induced by dehydration stress, ABA treatment and blue light via CRY1. Negative regulator of blue light-mediated photomorphogenic growth and blue and far-red-light-regulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. For example it binds to and regulates the expression of NST1. Its stability is modulated by PUB10 through polyubiquitination.	Basic helix-loop-helix (bHLH) DNA-binding family protein;(source:Araport11)
AT1G32700.1	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT1G32780.1	protein_coding	GroES-like zinc-binding dehydrogenase family protein		GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT1G32710.1	protein_coding	Cytochrome c oxidase, subunit Vib family protein		Cytochrome c oxidase, subunit Vib family protein;(source:Araport11)
AT1G32790.1	protein_coding	CTC-interacting domain 11	RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.	CTC-interacting domain 11;(source:Araport11)
AT1G32600.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G55380.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G55310.1	protein_coding	SC35-like splicing factor 33	Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SC35-like splicing factor 33;(source:Araport11)
AT1G55300.1	protein_coding	TBP-associated factor 7		TBP-associated factor 7;(source:Araport11)
AT1G55210.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT1G55360.1	protein_coding	Protein of Unknown Function (DUF239)		tRNA-splicing ligase (DUF239);(source:Araport11)
AT1G55290.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to oxidoreductase, 2OG-Fe(II) oxygenase	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G55350.1	protein_coding	calpain-type cysteine protease family	Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway. It localizes to membranes and undergoes intramolecular autolytic cleavage events that release the calpain domain into  the cytoplasm.	calpain-type cysteine protease family;(source:Araport11)
AT1G55280.1	protein_coding	Lipase/lipooxygenase, PLAT/LH2 family protein		Lipase/lipooxygenase, PLAT/LH2 family protein;(source:Araport11)
AT1G55200.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT1G55340.1	protein_coding	Protein of unknown function (DUF1639)		hypothetical protein (DUF1639);(source:Araport11)
AT1G55270.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	SAGL1 is a member of a small family of KELCH domain containing proteins. Loss of function mutants show increased lignin and anthocyanin production suggesting a role in regulation of phenylpropanoid biosynthesis.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G55190.1	protein_coding	PRA1 (Prenylated rab acceptor) family protein		PRA1 (Prenylated rab acceptor) family protein;(source:Araport11)
AT1G55330.1	protein_coding	arabinogalactan protein 21	Encodes a putative arabinogalactan-protein (AGP21).	arabinogalactan protein 21;(source:Araport11)
AT1G55260.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G55180.1	protein_coding	phospholipase D alpha 4	member of C2-PLD. subfamily Represents a phospholipase D (PLD) gene with four exons, hence it is a member of the alpha class.  Its amino acid sequence is quite different from other PLDs, therefore it might possess unique structural and/or catalytic properties.	phospholipase D alpha 4;(source:Araport11)
AT1G55320.1	protein_coding	acyl-activating enzyme 18	Encodes a protein with similarity to acyl activating enzymes. AAE18 is localized to the peroxisome where it may be involved in metabolism of auxin precursors to active auxins.	acyl-activating enzyme 18;(source:Araport11)
AT1G55250.1	protein_coding	histone mono-ubiquitination 2	Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.	histone mono-ubiquitination 2;(source:Araport11)
AT1G55240.1	protein_coding	Family of unknown function (DUF716) 		proteinase inhibitor I4, serpin (DUF716);(source:Araport11)
AT1G55150.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT1G55230.1	protein_coding	Family of unknown function (DUF716) 		proteinase inhibitor I4, serpin (DUF716);(source:Araport11)
AT1G55220.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G14140.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G14150.1	protein_coding	PsbQ-like 2	Encodes a subunit of the NAD(P)H dehydrogenase complex located in the chloroplast thylakoid lumen.	PsbQ-like 2;(source:Araport11)
AT1G14230.1	protein_coding	GDA1/CD39 nucleoside phosphatase family protein		GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11)
AT1G14240.1	protein_coding	GDA1/CD39 nucleoside phosphatase family protein		GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11)
AT1G14160.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT1G14090.1	pseudogene			pseudogene of Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G14170.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT1G14180.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G14110.1	protein_coding	fucosyltransferase 9	member of xyloglucan fucosyltransferase family	fucosyltransferase 9;(source:Araport11)
AT1G14190.1	protein_coding	Glucose-methanol-choline (GMC) oxidoreductase family protein		Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT1G14200.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G14120.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	DAO2 is an IAA oxidase expressed in root caps. it is a member of a family of dioxygenase and 2OG Fe(II) oxygenase domain and DAO domain containing proteins. It is expressed specifically in root cap cells and does not appear to be the major IAA oxidase in planta.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G14130.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	DAO1 is an IAA oxidase expressed in many different plant parts. it is a member of a family of dioxygenase and 2OG Fe(II) oxygenase domain and DAO domain containing proteins. It appears to be the major IAA oxidase in planta and major contributor to IAA degradation.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G14210.1	protein_coding	Ribonuclease T2 family protein		Ribonuclease T2 family protein;(source:Araport11)
AT1G14220.1	protein_coding	Ribonuclease T2 family protein		Ribonuclease T2 family protein;(source:Araport11)
AT1G42470.1	protein_coding	Patched family protein		Patched family protein;(source:Araport11)
AT1G42460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G07240.1);(source:TAIR10)
AT1G42450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.3e-96 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G42440.1	protein_coding			pre-rRNA-processing TSR1-like protein;(source:Araport11)
AT1G42430.1	protein_coding		Novel plant specific, chloroplast localized protein that is  involved in regulation of starch degradation.	inactive purple acid phosphatase-like protein;(source:Araport11)
AT1G42370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila);(source:TAIR10)
AT1G42420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-124 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G42360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1);(source:TAIR10)
AT1G42380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.0e-31 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G36370.1	protein_coding	serine hydroxymethyltransferase 7	Encodes a nuclear localised protein MSA1 (MORE SULPHUR ACCUMULATION1). Epigenetically regulates sulphur homeostasis. Has sequence similarity to SHM (serine hydroxymethyltransferase) but lacks SHM activity in vitro.	serine hydroxymethyltransferase 7;(source:Araport11)
AT1G36310.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G36380.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G36320.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G36390.1	protein_coding	Co-chaperone GrpE family protein	Chloroplast GrpE protein.	Co-chaperone GrpE family protein;(source:Araport11)
AT1G36340.1	protein_coding	ubiquitin-conjugating enzyme 31		ubiquitin-conjugating enzyme 31;(source:Araport11)
AT1G08920.1	protein_coding	ERD (early response to dehydration) six-like 1	Encodes ESL1, a transporter for monosaccharides.	ERD (early response to dehydration) six-like 1;(source:Araport11)
AT1G09000.1	protein_coding	NPK1-related protein kinase 1	NPK1-related protein kinase 1S	NPK1-related protein kinase 1;(source:Araport11)
AT1G09080.1	protein_coding	Heat shock protein 70 (Hsp 70) family protein		Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT1G08910.1	protein_coding	zinc ion binding;zinc ion binding	Encodes an SP-RING domain containing protein that functions in sumolaytion and is involved in positive regulation of sulfur metabolism and stress response.	zinc ion binding protein;(source:Araport11)
AT1G09070.1	protein_coding	soybean gene regulated by cold-2	SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting. The mRNA is cell-to-cell mobile.	soybean gene regulated by cold-2;(source:Araport11)
AT1G08900.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G09060.1	protein_coding	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase	JMJ24 is a nuclear localized JmjC domain containing protein. It has been shown to bind to transcribed regions AtSN1 and solo LTR and the promoter of SDC. JMJ24 appears to regulate basal levels of transcription of silenced loci in part by controlling methylation in heterochromatic regions.	JmjC domain protein JMJ24;(source:Araport11)
AT1G09050.1	protein_coding			arginine-glutamic acid dipeptide repeat protein;(source:Araport11)
AT1G08990.1	protein_coding	plant glycogenin-like starch initiation protein 5		plant glycogenin-like starch initiation protein 5;(source:Araport11)
AT1G08980.1	protein_coding	amidase 1	Encodes an enzyme with similarity to bacterial acylamidohydrolases and exhibits indole-3-acetamide amidohydrolase activity in vitro.  This enzyme may be involved in the in vivo biosynthesis of indole-acetic acid from indole-3-acetamide, a native metabolite of A. thaliana. It appears to exist as a monomer.	amidase 1;(source:Araport11)
AT1G08970.1	protein_coding	nuclear factor Y, subunit C9	Encodes a NUCLEAR FACTOR-Y C (NF-YC) homologue NF-YC9. NF-YC3., NF-YC4 and NF-YC9 redundantly modulate GA- and ABA-mediated seed germination.	nuclear factor Y, subunit C9;(source:Araport11)
AT1G08890.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G09130.1	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT1G08960.1	protein_coding	cation exchanger 11	Encodes a member of the Potassium-dependent sodium-calcium exchanger like-family that  localizes to the plasma membrane and nuclear periphery, and has a role in mediating high-af&#64257;nity K+ uptake and Na+ transport in yeast.	cation exchanger 11;(source:Araport11)
AT1G08880.1	protein_coding	Histone superfamily protein	Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A.  Upon DSB formation, rapid accumulation of phosphorylated  H2AX (&#947;-H2AX) occurs around the break site. H2AX foci accumulate in early G2.  Immunolocalization studies in spread preparations of  wild-type meiocytes at G2/early leptotene revealed  the accumulation of numerous rather diffuse &#947;-H2AX  foci throughout the chromatin. However,  their accumulation is not contemporaneous with  that of AtSPO11-1. At 3 h post-S, no &#947;-H2AX  foci are detected. During the 3- to 5-h window when  AtSPO11-1 foci rapidly disappear, there is an  equally swift accumulation of &#947;-H2AX to a maximum  of >50 diffuse foci. The level of &#947;H2AX then remains  constant for a further 13 h before undergoing a  gradual decrease to 10–20 foci in the 18- to 24-h post-S  period. By 30 h the foci have disappeared from the chromatin.	Histone superfamily protein;(source:Araport11)
AT1G09040.1	protein_coding			arginine-glutamic acid dipeptide repeat protein;(source:Araport11)
AT1G09030.1	protein_coding	nuclear factor Y, subunit B4		nuclear factor Y, subunit B4;(source:Araport11)
AT1G08940.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT1G08860.1	protein_coding	Calcium-dependent phospholipid-binding Copine family protein	Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death.	Calcium-dependent phospholipid-binding Copine family protein;(source:Araport11)
AT1G09020.1	protein_coding	homolog of yeast sucrose nonfermenting 4	Component of the regulatory subunit of SNF1-related protein kinase. As part of the regulatory complex it binds maltose which promotes kinase activity.	sucrose nonfermenting-like protein;(source:Araport11)
AT1G08930.1	protein_coding	Major facilitator superfamily protein	encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold. The mRNA is cell-to-cell mobile.	Major facilitator superfamily protein;(source:Araport11)
AT1G09010.1	protein_coding	glycoside hydrolase family 2 protein		glycoside hydrolase family 2 protein;(source:Araport11)
AT1G09100.1	protein_coding	26S proteasome AAA-ATPase subunit RPT5B	Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle.  Essential for gametophyte development.  In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b.  RPT5a and RPT5b show accession-dependent functional redundancy.  In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.	26S proteasome AAA-ATPase subunit RPT5B;(source:Araport11)
AT1G09090.1	protein_coding	respiratory burst oxidase homolog B	NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB  pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally  regulated manner. ABA caused accumulation of AtrbohB-ß mRNA and prevented prevented AtrbohB-a mRNA expression in fresh seeds.	respiratory burst oxidase-like protein;(source:Araport11)
AT1G15670.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	Encodes a member of a family of F-box proteins, called the KISS ME DEADLY (KMD) family, that targets type-B ARR proteins for degradation and is involved in the negative regulation of the cytokinin response. Also named as KFB1, a member of a group of Kelch repeat F-box proteins that negatively regulate phenylpropanoid biosynthesis by targeting the phenypropanoid biosynthesis enzyme phenylalanine ammonia-lyase.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G15680.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G15760.1	protein_coding	Sterile alpha motif (SAM) domain-containing protein		Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT1G15690.1	protein_coding	Inorganic H pyrophosphatase family protein	Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1. The mRNA is cell-to-cell mobile.	Inorganic H pyrophosphatase family protein;(source:Araport11)
AT1G15770.1	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT1G15840.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G15700.1	protein_coding	ATPase, F1 complex, gamma subunit protein	One of two genes that encode the gamma subunit of Arabidopsis chloroplast ATP synthase.  It is thought to be involved in the regulation of the ATP synthase activity.	ATPase, F1 complex, gamma subunit protein;(source:Araport11)
AT1G15780.1	protein_coding			mediator of RNA polymerase II transcription subunit 15a-like protein;(source:Araport11)
AT1G15850.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G15710.1	protein_coding	prephenate dehydrogenase family protein		prephenate dehydrogenase family protein;(source:Araport11)
AT1G15790.1	protein_coding			mediator of RNA polymerase II transcription subunit 15a-like protein;(source:Araport11)
AT1G15720.1	protein_coding	TRF-like 5	Arabidopsis thaliana myb family transcription factor (At1g15720). MYB/SANT domain containing protein.	TRF-like 5;(source:Araport11)
AT1G15800.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G15870.1	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT1G15730.1	protein_coding	Cobalamin biosynthesis CobW-like protein		Cobalamin biosynthesis CobW-like protein;(source:Araport11)
AT1G15880.1	protein_coding	golgi snare 11	Golgi SNARE 11 protein (GOS11)	golgi snare 11;(source:Araport11)
AT1G15740.1	protein_coding	Leucine-rich repeat family protein		Leucine-rich repeat family protein;(source:Araport11)
AT1G15750.1	protein_coding	Transducin family protein / WD-40 repeat family protein	Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus.  Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT1G15820.1	protein_coding	light harvesting complex photosystem II subunit 6	Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II.	light harvesting complex photosystem II subunit 6;(source:Araport11)
AT1G15890.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G15900.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G15830.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G15810.1	protein_coding	S15/NS1, RNA-binding protein		S15/NS1, RNA-binding protein;(source:Araport11)
AT1G15860.1	protein_coding	Domain of unknown function (DUF298)		defective in cullin neddylation protein (DUF298);(source:Araport11)
AT1G76840.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G76860.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT1G76870.1	protein_coding			transcription factor;(source:Araport11)
AT1G76880.1	protein_coding	Duplicated homeodomain-like superfamily protein	DF1 is a putative transcription factor required for the synthesis of seed mucilage polysaccharides. The df1 seeds produce almost 50% less mucilage than wild-type, but show less severe defects than the myb5 and ttg2 mutants.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT1G34390.1	protein_coding	auxin response factor 22		auxin response factor 22;(source:Araport11)
AT1G34380.1	protein_coding	5'-3' exonuclease family protein		5-3 exonuclease family protein;(source:Araport11)
AT1G34400.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G34370.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity.  In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity. Cell wall of the mutant is unstable in low pH medium (pH 4.5) in low Ca solution. This would mediate Ca-alleviation of low pH stress through pectin-Ca interaction. In vitro binding and mutated-promoter-GUS assays identified that STOP1 directly activates AtALMT1 expression through the binding to the promoter by four zinc finger domains. Binding of STOP1 to promoter is an essential step of Al-inducible AtALMT1 expression. The mRNA is cell-to-cell mobile.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G34360.1	protein_coding	translation initiation factor 3 (IF-3) family protein		translation initiation factor 3 (IF-3) family protein;(source:Araport11)
AT1G50840.1	protein_coding	polymerase gamma 2	DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation.	polymerase gamma 2;(source:Araport11)
AT1G50770.1	protein_coding	Aminotransferase-like, plant mobile domain family protein		Aminotransferase-like, plant mobile domain family protein;(source:Araport11)
AT1G50950.1	protein_coding	Thioredoxin protein with domain of unknown function (DUF1692)		protein disulfide-isomerase 5-like protein (DUF1692);(source:Araport11)
AT1G50780.1	protein_coding	2Fe-2S ferredoxin-like superfamily protein		2Fe-2S ferredoxin-like superfamily protein;(source:Araport11)
AT1G50870.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G50960.1	protein_coding	gibberellin 2-oxidase 7	Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins. DDF1 binds to GA2OX7 and regulates its expression in response to salt stress.	gibberellin 2-oxidase 7;(source:Araport11)
AT1G50880.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G50970.1	protein_coding	Membrane trafficking VPS53 family protein		Membrane trafficking VPS53 family protein;(source:Araport11)
AT1G50790.1	protein_coding	Plant mobile domain protein family		Plant mobile domain protein family;(source:Araport11)
AT1G50890.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G50980.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G50900.1	protein_coding	Ankyrin repeat family protein	Encodes GDC1 (Grana Deficient Chloroplast 1), an ankyrin domain containing protein required fro chloroplast thylakoid grana formation. The mRNA is cell-to-cell mobile.	Ankyrin repeat family protein;(source:Araport11)
AT1G50990.1	protein_coding	Protein kinase protein with tetratricopeptide repeat domain		kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT1G50820.1	protein_coding	Aminotransferase-like, plant mobile domain family protein		aminotransferase-like, mobile domain protein;(source:Araport11)
AT1G50910.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G51000.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G50830.1	protein_coding	Aminotransferase-like, plant mobile domain family protein		Aminotransferase-like, plant mobile domain family protein;(source:Araport11)
AT1G50920.1	protein_coding	Nucleolar GTP-binding protein	Putative GTPase  involved in HA - and ABA-mediated signaling pathways, particularly during defense respnses to pathogens. Has paralog NOG1-2.	Nucleolar GTP-binding protein;(source:Araport11)
AT1G50930.1	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT1G50940.1	protein_coding	electron transfer flavoprotein alpha	Encodes the electron transfer flavoprotein ETF alpha, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF beta is At5g43430.1) in Arabidopsis.  Mutations of the ETF beta gene results in accelerated senescence and early death compared to wild-type during extended darkness.	electron transfer flavoprotein alpha;(source:Araport11)
AT1G50850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 9.6e-44 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G60600.1	protein_coding	UbiA prenyltransferase family protein	Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport.	UbiA prenyltransferase family protein;(source:Araport11)
AT1G60720.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G60620.1	protein_coding	RNA polymerase I subunit 43		RNA polymerase I subunit 43;(source:Araport11)
AT1G60630.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G60710.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein	Encodes ATB2.	NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G60640.1	protein_coding			stress response protein;(source:Araport11)
AT1G60730.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G60650.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain	Encodes one of the zinc finger-containing glycine-rich RNA-binding proteins involved in cold tolerance: AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b), AT5G04280 (AtRZ-1c). It also, along with AtRZ-1c, plays important roles in plant development, pre- mRNA splicing, and general gene expression.	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT1G60740.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT1G60660.1	protein_coding	cytochrome B5-like protein	member of Cytochromes b5	cytochrome B5-like protein;(source:Araport11)
AT1G60560.1	protein_coding	SWIM zinc finger family protein		SWIM zinc finger family protein;(source:Araport11)
AT1G60490.1	protein_coding	vacuolar protein sorting 34	Encodes a phosphatidylinositol 3-kinase that is expressed in most plant tissues. Defects in VPS34 affect a number of cellular processes. Loss of function mutations are not transmitted through the male gametophyte due to defects in microgametogenesis therefore it is difficult to assess the effects of loss of VPS34 function in the whole plant. Involved in salt-stress responses.	vacuolar protein sorting 34;(source:Araport11)
AT1G60750.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G60670.1	protein_coding	Protein of unknown function (DUF3755)		hypothetical protein (DUF3755);(source:Araport11)
AT1G60570.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G60500.1	protein_coding	Dynamin related protein 4C		Dynamin related protein 4C;(source:Araport11)
AT1G60760.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G60470.1	protein_coding	galactinol synthase 4	Predicted to encode a galactinol synthase.	galactinol synthase 4;(source:Araport11)
AT1G60590.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G60770.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Ribosomal pentatricopeptide repeat protein	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G60680.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G60610.1	protein_coding	SBP (S-ribonuclease binding protein) family protein		SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT1G60530.1	protein_coding	Dynamin related protein 4A		Dynamin related protein 4A;(source:Araport11)
AT1G60780.1	protein_coding	Clathrin adaptor complexes medium subunit family protein		Clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT1G60690.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G60540.1	pseudogene		Annotated as pseudogene of the dynamin family.Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of Dynamin related protein 4C;(source:Araport11)
AT1G60700.1	protein_coding	SMAD/FHA domain-containing protein 		SMAD/FHA domain-containing protein;(source:Araport11)
AT1G60550.1	protein_coding	enoyl-CoA hydratase/isomerase D		enoyl-CoA hydratase/isomerase D;(source:Araport11)
AT1G60790.1	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT1G60800.1	protein_coding	NSP-interacting kinase 3	Encodes one of a group of LRR-RLKs, designated as CLAVATA3 INSENSITIVE RECEPTOR KINASES (CIKs), that act as co-receptors and have essential roles in regulating CLV3-mediated stem cell homeostasis.	NSP-interacting kinase 3;(source:Araport11)
AT1G42550.1	protein_coding	plastid movement impaired1	Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms. The mRNA is cell-to-cell mobile.	plastid movement impaired1;(source:Araport11)
AT1G42680.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G42570.1	pseudogene			pseudogene of FAR1-related sequence 5;(source:Araport11)
AT1G42610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G47680.1);(source:TAIR10)
AT1G42630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G40080.1);(source:TAIR10)
AT1G42650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to B, blastp match of 48%25 identity and 4.4e-72 P-value to GP|22830897|dbj|BAC15771.1||AB087616 B {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT1G47270.1	protein_coding	tubby like protein 6	Member of TLP family of tubby like proteins that also contain an F-Box. Localized to the plasma membrane.	tubby like protein 6;(source:Araport11)
AT1G47260.1	protein_coding	gamma carbonic anhydrase 2	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	gamma carbonic anhydrase 2;(source:Araport11)
AT1G47250.1	protein_coding	20S proteasome alpha subunit F2	Encodes 20S proteasome subunit PAF2 (PAF2).	20S proteasome alpha subunit F2;(source:Araport11)
AT1G47240.1	protein_coding	NRAMP metal ion transporter 2	Encodes a member of the NRAMP2 gene family of metal ion transporters that is required for root growth at low Mn conditions. NRAMP2 is mainly localized to TGN and has influx transport activity of Mn in yeast. Mutation of NRAMP2 impaired root growth, although there was greater Mn retention in the roots under Mn-deficient conditions.	NRAMP metal ion transporter 2;(source:Araport11)
AT1G47230.1	protein_coding	CYCLIN A3;4		CYCLIN A3;(source:Araport11)
AT1G47220.1	protein_coding	Cyclin A3;3		Cyclin A3;(source:Araport11)
AT1G61940.1	protein_coding	tubby like protein 4	Member of TLP family	tubby like protein 4;(source:Araport11)
AT1G61950.1	protein_coding	calcium-dependent protein kinase 19	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 19;(source:Araport11)
AT1G61900.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G62000.1	protein_coding		Encodes a member of a mucilage protein family. Predicted in silico to be glycosylated.	transmembrane protein;(source:Araport11)
AT1G61930.1	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT1G61850.1	protein_coding	phospholipases;galactolipases	Encodes a non-specific lipase that hydrolyzes phospholipids as well as galactolipids, at both sn-1 and sn-2 positions. Involved in basal jasmonic acid biosynthesis by releasing the precursor fatty acid from membrane lipids. Mutant plants were impacted in resistance to fungus B. cinerea.	phospholipase A I-like protein;(source:Araport11)
AT1G62010.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G61860.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G62020.1	protein_coding	Coatomer, alpha subunit		Coatomer, alpha subunit;(source:Araport11)
AT1G61920.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G61870.1	protein_coding	pentatricopeptide repeat 336	Generic translation factor involved in mitochondrial translation.	pentatricopeptide repeat 336;(source:Araport11)
AT1G62030.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G61960.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G61890.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G62040.1	protein_coding	Ubiquitin-like superfamily protein	Autophagy protein.	Ubiquitin-like superfamily protein;(source:Araport11)
AT1G61970.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G61980.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G61820.1	protein_coding	beta glucosidase 46		beta glucosidase 46;(source:Araport11)
AT1G61990.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G61830.1	pseudogene			pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G61840.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G21740.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		DUF630 family protein, putative (DUF630 and DUF632);(source:Araport11)
AT1G21750.1	protein_coding	PDI-like 1-1	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response. The mRNA is cell-to-cell mobile.	PDI-like 1-1;(source:Araport11)
AT1G21850.1	protein_coding	SKU5 similar 8		SKU5 similar 8;(source:Araport11)
AT1G21680.1	protein_coding	DPP6 N-terminal domain-like protein		DPP6 N-terminal domain-like protein;(source:Araport11)
AT1G21650.1	protein_coding	Preprotein translocase SecA family protein	Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid.  Loss-of-function mutations result in arrest at the globular stage and embryo lethality.	Preprotein translocase SecA family protein;(source:Araport11)
AT1G21690.1	protein_coding	ATPase family associated with various cellular activities (AAA) 		ATPase family associated with various cellular activities (AAA);(source:Araport11)
AT1G21760.1	protein_coding	F-box protein 7	This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures. The mRNA is cell-to-cell mobile.	F-box protein 7;(source:Araport11)
AT1G21630.1	protein_coding	Calcium-binding EF hand family protein	TPLATE Adaptor complex subunit.	Calcium-binding EF hand family protein;(source:Araport11)
AT1G21700.1	protein_coding	SWITCH/sucrose nonfermenting 3C	a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes.  Referred to as CHB3 in Zhou et al (2003).	SWITCH/sucrose nonfermenting 3C;(source:Araport11)
AT1G21770.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G21640.1	protein_coding	NAD kinase 2	Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.	NAD kinase 2;(source:Araport11)
AT1G21710.1	protein_coding	8-oxoguanine-DNA glycosylase 1	Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme.	8-oxoguanine-DNA glycosylase 1;(source:Araport11)
AT1G21780.1	protein_coding	BTB/POZ domain-containing protein	BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.	BTB/POZ domain-containing protein;(source:Araport11)
AT1G21660.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G21720.1	protein_coding	proteasome beta subunit C1	20S proteasome beta subunit PBC1 truncated protein (PBC1)	proteasome beta subunit C1;(source:Araport11)
AT1G21670.1	protein_coding			DPP6 amino-terminal domain protein;(source:Araport11)
AT1G21730.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G53090.1	protein_coding	SPA1-related 4	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain.  SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	SPA1-related 4;(source:Araport11)
AT1G53080.1	protein_coding	Legume lectin family protein		Legume lectin family protein;(source:Araport11)
AT1G53070.1	protein_coding	Legume lectin family protein		Legume lectin family protein;(source:Araport11)
AT1G53060.1	protein_coding	Legume lectin family protein		Legume lectin family protein;(source:Araport11)
AT1G53130.1	protein_coding	Stigma-specific Stig1 family protein	Encodes GRIM REAPER (GRI), involved in the regulation of cell death induced by extracellular ROS (reactive oxygen species).  Secreted into the extracellular space.	Stigma-specific Stig1 family protein;(source:Araport11)
AT1G53050.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G53120.1	protein_coding	RNA-binding S4 domain-containing protein		RNA-binding S4 domain-containing protein;(source:Araport11)
AT1G53040.1	protein_coding	Protein of unknown function (DUF616)		tRNA (met) cytidine acetyltransferase, putative (DUF616);(source:Araport11)
AT1G53110.1	protein_coding			proton pump-interactor;(source:Araport11)
AT1G53100.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G53030.1	protein_coding	Cytochrome C oxidase copper chaperone (COX17)	encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots.	Cytochrome C oxidase copper chaperone (COX17);(source:Araport11)
AT1G43980.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G43930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.2e-56 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G44060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-22 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G43940.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42540.1);(source:TAIR10)
AT1G44030.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G44020.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G44000.1	protein_coding			STAY-GREEN-like protein;(source:Araport11)
AT1G44010.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G43950.1	protein_coding	auxin response factor 23		auxin response factor 23;(source:Araport11)
AT1G44050.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G43970.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G43910.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G43920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07090.1);(source:TAIR10)
AT1G75050.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT1G75040.1	protein_coding	pathogenesis-related gene 5	Thaumatin-like protein involved in response to pathogens.  mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment. The mRNA is cell-to-cell mobile.	pathogenesis-related protein 5;(source:Araport11)
AT1G74810.1	protein_coding	HCO3- transporter family		HCO3- transporter family;(source:Araport11)
AT1G75110.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein	Encodes an arabinosyltransferase that modifies extensin proteins in root hair cells.	Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G75100.1	protein_coding	J-domain protein required for chloroplast accumulation response 1	Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin.  Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.	J-domain protein required for chloroplast accumulation response 1;(source:Araport11)
AT1G74860.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G75090.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT1G75120.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein	Encodes an arabinosyltransferase that modifies extensin proteins in root hair cells.	Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G75080.1	protein_coding	Brassinosteroid signalling positive regulator (BZR1) family protein	Encodes a positive regulator of the brassinosteroid (BR) signalling pathway that mediates both downstream BR responses and negative feedback regulation of BR biosynthesis. There is evidence for phosphorylation-dependent nucleocytoplasmic shuttling of BZR1. GSK3-like kinases (including BIN2), 14-3-3 proteins, and the phosphatase BSU1 seem to participate in this process. Phosphorylation also appears to affect BZR1's transcriptional activities.	Brassinosteroid signaling positive regulator (BZR1) family protein;(source:Araport11)
AT1G75060.1	protein_coding		Evening-expressed key component of Sin3-HDAC complex, which bind directly to the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) and PSEUDO-RESPONSE REGULATOR 9 (PRR9) promoters and catalyze histone 3 (H3) deacetylation at the cognate regions to repress expression, allowing the declining phase of their expression at dusk.	histone deacetylase complex subunit;(source:Araport11)
AT1G74180.1	protein_coding	receptor like protein 14		receptor like protein 14;(source:Araport11)
AT1G74170.1	protein_coding	receptor like protein 13		receptor like protein 13;(source:Araport11)
AT1G74160.1	protein_coding		Member of a small gene family in Arabidopsis. Quadruple mutants in this family display defects in cell elongation.	LONGIFOLIA protein;(source:Araport11)
AT1G74150.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G74140.1	protein_coding	Rhomboid-related intramembrane serine protease family protein		Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT1G74130.1	protein_coding	Rhomboid-related intramembrane serine protease family protein		Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT1G74120.1	protein_coding	Mitochondrial transcription termination factor family protein	Encodes a mitochondrial transcription termination factor mTERF15. Required for mitochondrial nad2 intron 3 splicing and functional complex I activity.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G20910.1	protein_coding	ARID/BRIGHT DNA-binding domain-containing protein		ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT1G20900.1	protein_coding	Predicted AT-hook DNA-binding family protein	Encodes an AT hook domain containing protein that acts redundantly with SOB3 to modulate hypocotyl growth inhibition in response to light.	Putative AT-hook DNA-binding family protein;(source:Araport11)
AT1G20980.1	protein_coding	squamosa promoter binding protein-like 14	Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator, including a nuclear localization signal sequence, a plant-specific DNA binding domain (the SBP box), and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1, but also in the development of normal plant architecture. The mRNA is cell-to-cell mobile.	squamosa promoter binding protein-like 14;(source:Araport11)
AT1G20890.1	protein_coding			caveolin-1 protein;(source:Araport11)
AT1G20970.1	protein_coding			calponin-like domain protein;(source:Araport11)
AT1G20880.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G20960.1	protein_coding	U5 small nuclear ribonucleoprotein helicase, putative	Similar to DEAD/DExH box ATP-dependent RNA helicase . Required for proper splicing of FLC. Mutants have reduced FLC levels and are early flowering.	U5 small nuclear ribonucleoprotein helicase;(source:Araport11)
AT1G20870.1	protein_coding	HSP20-like chaperones superfamily protein	Encodes an anti-silencing factor that prevents gene repression and DNA hypermethylation.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G20950.1	protein_coding	Phosphofructokinase family protein		Phosphofructokinase family protein;(source:Araport11)
AT1G20860.1	protein_coding	phosphate transporter 1;8	Encodes Pht1;8, a member of the Pht1 family of phosphate transporters which include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341).	phosphate transporter 1;(source:Araport11)
AT1G20940.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G21010.1	protein_coding			poly polymerase;(source:Araport11)
AT1G21000.1	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT1G20930.1	protein_coding	cyclin-dependent kinase B2;2	Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle.	cyclin-dependent kinase B2;(source:Araport11)
AT1G20920.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G20990.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G52160.1	protein_coding	tRNAse Z3	Encodes a tRNase Z.	tRNAse Z3;(source:Araport11)
AT1G52220.1	protein_coding			CURVATURE THYLAKOID protein;(source:Araport11)
AT1G52230.1	protein_coding	photosystem I subunit H2	Phosphorylation of this protein is dependent on calcium. The mRNA is cell-to-cell mobile.	photosystem I subunit H2;(source:Araport11)
AT1G52180.1	protein_coding	Aquaporin-like superfamily protein		Aquaporin-like superfamily protein;(source:Araport11)
AT1G52190.1	protein_coding	Major facilitator superfamily protein	Encodes a low affinity nitrate transporter that is expressed in the plasma membrane and found in the phloem of the major veins of leaves.  It is responsible for nitrate redistribution to young leaves.	Major facilitator superfamily protein;(source:Araport11)
AT1G52200.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT1G78720.1	protein_coding	SecY protein transport family protein		SecY protein transport family protein;(source:Araport11)
AT1G78790.1	protein_coding		Encodes a protein with high similarity to mammalian MHF2 that acts in the same pathway as FANCM to restrain class II meiotic crossing over.	centromere protein X;(source:Araport11)
AT1G78900.1	protein_coding	vacuolar ATP synthase subunit A	Encodes catalytic subunit A of the vacuolar ATP synthase.  Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology. The mRNA is cell-to-cell mobile.	vacuolar ATP synthase subunit A;(source:Araport11)
AT1G78710.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 42	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 42;(source:Araport11)
AT1G78780.1	protein_coding	pathogenesis-related family protein		pathogenesis-related family protein;(source:Araport11)
AT1G78850.1	protein_coding	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain	curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein. Belongs to GNA domain lectin family. Enhances PAP26 function to facilitate Pi-scavenging by Pi-starved plants.	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein;(source:Araport11)
AT1G78890.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G78700.1	protein_coding	BES1/BZR1 homolog 4		BES1/BZR1 homolog 4;(source:Araport11)
AT1G78770.1	protein_coding	anaphase promoting complex 6		anaphase promoting complex 6;(source:Araport11)
AT1G78840.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G78880.1	protein_coding	Ubiquitin-specific protease family C19-related protein	Plasma membrane-localized proteins that negatively regulate cellulose synthesis by inhibiting the exocytosis of CESAs.	Ubiquitin-specific protease family C19-related protein;(source:Araport11)
AT1G78690.1	protein_coding	Phospholipid/glycerol acyltransferase family protein	Encodes a lysoglycerophospholipid O-acyltransferase that acylates 1-acyl lyso PE and 1-acyl lyso PG but not PE or PG.	Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT1G78920.1	protein_coding	vacuolar H+-pyrophosphatase 2	Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.	vacuolar H+-pyrophosphatase 2;(source:Araport11)
AT1G78830.1	protein_coding	Curculin-like (mannose-binding) lectin family protein		Curculin-like (mannose-binding) lectin family protein;(source:Araport11)
AT1G78870.1	protein_coding	ubiquitin-conjugating enzyme 35	UBC35/UBC13A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UBC35/UBC13A can form diubiquitin and triubiquitin chains in combination with MMZ1,2,3,4/(UEV1A,B,C,D) in vitro. It can also functionally complement an mms2 ubc13 mutation in budding yeast by increasing the double mutant's viability in the presence of the DNA damaging agent MMS, when it is co-expressed with MMZ / UEV1 genes. A wild type phenotype is restored with MMZ3/UEV1C and MMZ4/UEV1D, but only partial complementation is achieved with MMZ1/UEV1A or MMZ2/UEV1B. The mRNA is cell-to-cell mobile.	ubiquitin-conjugating enzyme 35;(source:Araport11)
AT1G78760.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G78820.1	protein_coding	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain		D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein;(source:Araport11)
AT1G78860.1	protein_coding	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain	curculin-like (mannose-binding) lectin family protein, low similarity to Ser/Thr protein kinase (Zea mays) GI:2598067; contains Pfam profile PF01453: Lectin (probable mannose binding) but not the protein kinase domain of the Z. mays protein	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein;(source:Araport11)
AT1G78670.1	protein_coding	gamma-glutamyl hydrolase 3		gamma-glutamyl hydrolase 3;(source:Araport11)
AT1G78750.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G78660.1	protein_coding	gamma-glutamyl hydrolase 1	The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.	gamma-glutamyl hydrolase 1;(source:Araport11)
AT1G78740.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT1G78910.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT1G78810.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G78680.1	protein_coding	gamma-glutamyl hydrolase 2	The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.	gamma-glutamyl hydrolase 2;(source:Araport11)
AT1G78800.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G78730.1	protein_coding	FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein		FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G58410.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G58400.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G58470.1	protein_coding	RNA-binding protein 1	Encodes an mRNA-binding protein that contains two RNA recognition motifs (RRMs) and is expressed in proliferating tissues. Preferentially binds UUAGG, GUAGG and/or UUAGU. Loss of function of RBP1 causes decreased root length.	RNA-binding protein 1;(source:Araport11)
AT1G58390.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G58460.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G58450.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G58440.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein	Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.	FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT1G58430.1	protein_coding	GDSL-like Lipase/Acylhydrolase family protein	Encodes an anther-specific proline-rich protein.	GDSL-like Lipase/Acylhydrolase family protein;(source:Araport11)
AT1G58420.1	protein_coding	Uncharacterised conserved protein UCP031279		Uncharacterized conserved protein UCP031279;(source:Araport11)
AT1G15100.1	protein_coding	RING-H2 finger A2A	Encodes a putative RING-H2 finger protein RHA2a.	RING-H2 finger A2A;(source:Araport11)
AT1G15200.1	protein_coding	protein-protein interaction regulator family protein		protein-protein interaction regulator family protein;(source:Araport11)
AT1G15130.1	protein_coding	Endosomal targeting BRO1-like domain-containing protein		Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT1G15360.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G15210.1	protein_coding	pleiotropic drug resistance 7		pleiotropic drug resistance 7;(source:Araport11)
AT1G15140.1	protein_coding	FAD/NAD(P)-binding oxidoreductase		FAD/NAD(P)-binding oxidoreductase;(source:Araport11)
AT1G15370.1	protein_coding	SNARE-like superfamily protein	TPLATE adaptor complex subunit.	SNARE-like superfamily protein;(source:Araport11)
AT1G15220.1	protein_coding	cytochrome c biogenesis protein family	Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2.	cytochrome c biogenesis protein family;(source:Araport11)
AT1G15150.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G15380.1	protein_coding	Lactoylglutathione lyase / glyoxalase I family protein	Glyoxalase which affects ABA?JA crosstalk.	Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT1G15390.1	protein_coding	peptide deformylase 1A	encodes a peptide deformylase-like protein. Removes N-formyl groups, a prerequisite for the action of methionine aminopeptidase during protein synthesis. Targeted to mitochondria. Requires Zn for catalysis.	peptide deformylase 1A;(source:Araport11)
AT1G15400.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G15230.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G15240.1	protein_coding	Phox-associated domain;Phox-like;Sorting nexin, C-terminal	Encodes a member of the Arabidopsis sorting nexin family.	phox (PX) domain-containing protein;(source:Araport11)
AT1G15080.1	protein_coding	lipid phosphate phosphatase 2	Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals.	lipid phosphate phosphatase 2;(source:Araport11)
AT1G15260.1	protein_coding			LOW protein: ATP-dependent RNA helicase-like protein;(source:Araport11)
AT1G15270.1	protein_coding	Translation machinery associated TMA7		Translation machinery associated TMA7;(source:Araport11)
AT1G15280.1	protein_coding	CASC3/Barentsz eIF4AIII binding		CASC3/Barentsz eIF4AIII binding protein;(source:Araport11)
AT1G15290.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes REDUCED CHLOROPLAST COVERAGE 3 (REC3).  Contributes to establishing the size of the chloroplast compartment.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G15110.1	protein_coding	phosphatidyl serine synthase family protein	PSS1 encodes a base-exchange-type Phosphatidylserine (PS) synthase. Mutant analysis revealed its role in pollen maturation.	phosphatidyl serine synthase family protein;(source:Araport11)
AT1G15300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 5.1e-59 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT1G15310.1	protein_coding	signal recognition particle 54 kDa subunit	54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins	signal recognition particle 54 kDa subunit;(source:Araport11)
AT1G15320.1	protein_coding			seed dormancy control protein;(source:Araport11)
AT1G15250.1	protein_coding	Zinc-binding ribosomal protein family protein		Zinc-binding ribosomal protein family protein;(source:Araport11)
AT1G15120.1	protein_coding	Ubiquinol-cytochrome C reductase hinge protein		Ubiquinol-cytochrome C reductase hinge protein;(source:Araport11)
AT1G15160.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G15330.1	protein_coding	Cystathionine beta-synthase (CBS) protein		Cystathionine beta-synthase (CBS) protein;(source:Araport11)
AT1G15170.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G15340.1	protein_coding	methyl-CPG-binding domain 10	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain 10;(source:Araport11)
AT1G15180.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G15190.1	protein_coding	Fasciclin-like arabinogalactan family protein	Fasciclin-like arabinogalactan protein.  Possibly involved in embryogenesis and seed development.	Fasciclin-like arabinogalactan family protein;(source:Araport11)
AT1G15350.1	protein_coding			DUF4050 family protein;(source:Araport11)
AT1G32940.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT1G32880.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G32860.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G32820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.6e-83 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G32950.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT1G32870.1	protein_coding	NAC domain protein 13	Expression in rosette leaves is activated by high concentration of boron.	NAC domain protein 13;(source:Araport11)
AT1G32960.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT1G32980.1	protein_coding	Subtilisin-like serine endopeptidase family protein		Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT1G32900.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G32970.1	protein_coding	Subtilisin-like serine endopeptidase family protein		Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT1G32910.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G32990.1	protein_coding	plastid ribosomal protein l11	mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11 The mRNA is cell-to-cell mobile.	plastid ribosomal protein l11;(source:Araport11)
AT1G33000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT4G08860.1);(source:TAIR10)
AT1G32850.1	protein_coding	ubiquitin-specific protease 11		ubiquitin-specific protease 11;(source:Araport11)
AT1G32830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G30450.1);(source:TAIR10)
AT1G32920.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G32840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1);(source:TAIR10)
AT1G33010.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G33020.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G33030.1	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT1G32930.1	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT1G41690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.5e-165 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G63320.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G63250.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT1G63310.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G63240.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G63300.1	protein_coding	Myosin heavy chain-related protein		Myosin heavy chain-related protein;(source:Araport11)
AT1G63230.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G63290.1	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT1G63220.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G63340.1	protein_coding	Flavin-containing monooxygenase family protein		Flavin-containing monooxygenase family protein;(source:Araport11)
AT1G63280.1	protein_coding	Serine protease inhibitor (SERPIN) family protein		Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT1G63270.1	protein_coding	non-intrinsic ABC protein 10	Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data.	non-intrinsic ABC protein 10;(source:Araport11)
AT1G63330.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G63260.1	protein_coding	tetraspanin10	Member of TETRASPANIN family	tetraspanin10;(source:Araport11)
AT1G06160.1	protein_coding	octadecanoid-responsive Arabidopsis AP2/ERF 59	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	octadecanoid-responsive AP2/ERF 59;(source:Araport11)
AT1G06250.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G06170.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a bHLH transcription factor that together with bHLH010 and bHLH091 is important for the normal transcriptome of the developing Arabidopsis anther, possibly by forming a feed-forward loop with DYT1.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G06260.1	protein_coding	Cysteine proteinases superfamily protein	Cysteine peptidase,activity detected in leaf and flower.	Cysteine proteinases superfamily protein;(source:Araport11)
AT1G06180.1	protein_coding	myb domain protein 13	member of MYB3R- and R2R3- type MYB- encoding genes	myb domain protein 13;(source:Araport11)
AT1G06270.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G06280.1	protein_coding	LOB domain-containing protein 2		LOB domain-containing protein 2;(source:Araport11)
AT1G06200.1	protein_coding	Peptidase S24/S26A/S26B/S26C family protein		Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT1G06210.1	protein_coding	ENTH/VHS/GAT family protein		ENTH/VHS/GAT family protein;(source:Araport11)
AT1G06240.1	protein_coding	Protein of unknown function DUF455		diiron containing four-helix bundle family ferritin protein, putative (Protein of unknown function DUF455);(source:Araport11)
AT1G06220.1	protein_coding	Ribosomal protein S5/Elongation factor G/III/V family protein	Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS. The mRNA is cell-to-cell mobile.	Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT1G06190.1	protein_coding	Rho termination factor	Encodes a  novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.	Rho termination factor;(source:Araport11)
AT1G06230.1	protein_coding	global transcription factor group E4	This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.	global transcription factor group E4;(source:Araport11)
AT1G48620.1	protein_coding	high mobility group A5	This gene is predicted to encodes a histone H1/H5 family member. A plant line expressing an RNAi construct targeted against HON5 shows a reduced level of agrobacterium-mediated root transformation.	high mobility group A5;(source:Araport11)
AT2G27500.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT2G27420.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT2G27510.1	protein_coding	ferredoxin 3		ferredoxin 3;(source:Araport11)
AT2G27430.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT2G27440.1	pseudogene		pseudogene of rac GTPase activating protein	pseudogene of Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein;(source:Araport11)
AT2G27450.1	protein_coding	nitrilase-like protein 1	Encodes N-carbamoylputrescine amidohydrolase that is involved in putrescine and polyamine biosynthesis.	nitrilase-like protein 1;(source:Araport11)
AT2G27460.1	protein_coding	sec23/sec24 transport family protein	Sec23 homolog , forms a distinct clade with SEC23A.Mutants have defects in pollen exine patterning, tapetal development and pollen intine formation.	sec23/sec24 transport family protein;(source:Araport11)
AT2G27470.1	protein_coding	nuclear factor Y, subunit B11		nuclear factor Y, subunit B11;(source:Araport11)
AT2G27480.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT2G27490.1	protein_coding	dephospho-CoA kinase family	AT2G27490 encodes dephospho-CoA kinase. The molecular function was shown to phosphorylate the ribosyl moiety forming CoA.	dephospho-CoA kinase family;(source:Araport11)
AT2G01200.1	protein_coding	indole-3-acetic acid inducible 32	Belongs to auxin inducible gene family.	indole-3-acetic acid inducible 32;(source:Araport11)
AT2G01210.1	protein_coding	Leucine-rich repeat protein kinase family protein	ZAR1 encodes a plasma membrane localized leucine-rich repeat receptor-like kinase (LRR-RLK) that contains a putative CaM-binding domain and a G&#946;-binding motif within its intracellular kinase region. Homozygous of function mutations are embryo-lethal and fail to properly make the first asymmetric division of the zygote. ZAR1 interacts with both CaM and G&#946; in vivo and that interaction activates ZAR1 kinase activity.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G01220.1	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT2G01310.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G01140.1	protein_coding	Aldolase superfamily protein		Aldolase superfamily protein;(source:Araport11)
AT2G01240.1	protein_coding	Reticulon family protein		reticulon-like protein B15;(source:Araport11)
AT2G01250.1	protein_coding	Ribosomal protein L30/L7 family protein	Cytosolic ribosomal 60S subunit protein.	Ribosomal protein L30/L7 family protein;(source:Araport11)
AT2G01320.1	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT2G01260.1	protein_coding	Protein of unknown function (DUF789)		hypothetical protein (DUF789);(source:Araport11)
AT2G01330.1	protein_coding	nucleotide binding		nucleotide binding protein;(source:Araport11)
AT2G01150.1	protein_coding	RING-H2 finger protein 2B	Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils.	RING-H2 finger protein 2B;(source:Araport11)
AT2G01270.1	protein_coding	quiescin-sulfhydryl oxidase 2	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.	quiescin-sulfhydryl oxidase 2;(source:Araport11)
AT2G01340.1	protein_coding		Encodes a protein whose expression is responsive to nematode infection.	plastid movement impaired protein;(source:Araport11)
AT2G01280.1	protein_coding	Cyclin/Brf1-like TBP-binding protein		Cyclin/Brf1-like TBP-binding protein;(source:Araport11)
AT2G01350.1	protein_coding	quinolinate phoshoribosyltransferase	At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.	quinolinate phoshoribosyltransferase;(source:Araport11)
AT2G01290.1	protein_coding	ribose-5-phosphate isomerase 2	Cytosolic ribose-5-phosphate isomerase.  Knockout mutation causes chloroplast dysfunction, late flowering  and premature cell death.	ribose-5-phosphate isomerase 2;(source:Araport11)
AT2G01360.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat protein;(source:Araport11)
AT2G01170.1	protein_coding	bidirectional amino acid transporter 1	Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys, GABA but not pro with both export and import activity.  Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.	bidirectional amino acid transporter 1;(source:Araport11)
AT2G01300.1	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT2G01370.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT2G01180.1	protein_coding	phosphatidic acid phosphatase 1	Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.	phosphatidic acid phosphatase 1;(source:Araport11)
AT2G01190.1	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT2G12680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G12660.1	pseudogene			pseudogene of xyloglucan endotransglucosylase/hydrolase 21;(source:Araport11)
AT2G12670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.9e-29 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G12730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.8e-23 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G12720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.6e-66 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G12710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G12700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24910.1);(source:TAIR10)
AT2G12690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G20440.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G20350.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G20270.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT2G20340.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	Encodes an aromatic aldehyde synthase (AtAAS), which catalyzes the in vitro conversion of phenylalanine and 3,4-dihydroxy-L-phenylalanine to phenylacetaldehyde and dopaldehyde, respectively. The mRNA is cell-to-cell mobile.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT2G20260.1	protein_coding	photosystem I subunit E-2	Encodes subunit E of photosystem I. The mRNA is cell-to-cell mobile.	photosystem I subunit E-2;(source:Araport11)
AT2G20410.1	protein_coding	RNA-binding ASCH domain protein		RNA-binding ASCH domain protein;(source:Araport11)
AT2G20330.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G20400.1	protein_coding	myb-like HTH transcriptional regulator family protein	MYB-CC transcription factor. PHL4 is related to PHR1 (which regulates plant Pi starvation response) but it does not seem to have a significant role in Pi starvation.	myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT2G20320.1	protein_coding	DENN (AEX-3) domain-containing protein		DENN (AEX-3) domain-containing protein;(source:Araport11)
AT2G20250.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G20390.1	protein_coding			cytochrome oxidase complex assembly protein;(source:Araport11)
AT2G20310.1	protein_coding	RPM1 interacting protein 13	Encodes RPM1 Interacting Protein 13 (RIN13), a resistance protein interactor shown to positively enhance resistance function of RPM1.	RPM1 interacting protein 13;(source:Araport11)
AT2G20240.1	protein_coding	Protein of unknown function (DUF3741)		GPI-anchored adhesin-like protein, putative (DUF3741);(source:Araport11)
AT2G20380.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G20300.1	protein_coding	Protein kinase superfamily protein	Encodes ABNORMAL LEAF SHAPE 2 (ALE2), a receptor-like protein kinase (RLK) with a cluster of basic amino acid residues followed by a cysteine-containing sequence in the putative extracellular domain.  Function together with ACR4 (Arabidopsis homolog of the Crinkly4) and ALE1 in positively regulating protoderm-specific gene expression and for the formation of leafy organs. ale2 mutants have various epidermal defects, including disorganization of epidermis-related tissues, defects in the leaf cuticle and the fusion of organs.	Protein kinase superfamily protein;(source:Araport11)
AT2G20230.1	protein_coding	Tetraspanin family protein		Tetraspanin family protein;(source:Araport11)
AT2G20370.1	protein_coding	Exostosin family protein	Encodes a xyloglucan galactosyltransferase located in the membrane of Golgi stacks that is involved in the biosynthesis of fucose.  It is also involved in endomembrane organization. It is suggested that it is a dual-function protein that is responsible for actin organization and the synthesis of cell wall materials. The mRNA is cell-to-cell mobile.	Exostosin family protein;(source:Araport11)
AT2G20290.1	protein_coding	myosin-like protein XIG	member of Myosin-like proteins	myosin-like protein XIG;(source:Araport11)
AT2G20360.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G20280.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT2G20210.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT2G20420.1	protein_coding	ATP citrate lyase (ACL) family protein		ATP citrate lyase (ACL) family protein;(source:Araport11)
AT2G46320.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT2G46410.1	protein_coding	Homeodomain-like superfamily protein	Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.	Homeodomain-like superfamily protein;(source:Araport11)
AT2G46420.1	protein_coding	Plant protein 1589 of unknown function		helicase with zinc finger protein;(source:Araport11)
AT2G46370.1	protein_coding	Auxin-responsive GH3 family protein	Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.	Auxin-responsive GH3 family protein;(source:Araport11)
AT2G46430.1	protein_coding	cyclic nucleotide gated channel 3	Encodes a cyclic nucleotide gated channel, downstream component of the signaling pathways leading to hypersensitive response (HR) resistance.	cyclic nucleotide gated channel 3;(source:Araport11)
AT2G46380.1	protein_coding	Protein of unknown function (DUF3133)		extra-large G-like protein, putative (DUF3133);(source:Araport11)
AT2G46440.1	protein_coding	cyclic nucleotide-gated channels	Member of Cyclic nucleotide gated channel family. Positive regulator of resistance against avirulent fungal pathogen. The mRNA is cell-to-cell mobile.	cyclic nucleotide-gated channels;(source:Araport11)
AT2G46390.1	protein_coding		predicted to encode subunit 8 of mitochondrial complex II and to participate in the respiratory chain	succinate dehydrogenase subunit;(source:Araport11)
AT2G46450.1	protein_coding	cyclic nucleotide-gated channel 12	Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.	cyclic nucleotide-gated channel 12;(source:Araport11)
AT2G46400.1	protein_coding	WRKY DNA-binding protein 46	Encodes a WRKY transcription factor that contributes to the feedforward inhibition of osmotic/salt stress-dependent LR inhibition via regulation of ABA signaling and auxin   homeostasis.	WRKY DNA-binding protein 46;(source:Araport11)
AT2G46460.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G46470.1	protein_coding	inner membrane protein OXA1-like		inner membrane protein OXA1-like protein;(source:Araport11)
AT2G46340.1	protein_coding	SPA (suppressor of phyA-105) protein family	Encodes a member of the SPA (suppressor of phyA-105) protein family  (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light.	SPA (suppressor of phyA-105) protein family;(source:Araport11)
AT2G46360.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G35910.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G35990.1	protein_coding	Putative lysine decarboxylase family protein		Putative lysine decarboxylase family protein;(source:Araport11)
AT2G35900.1	protein_coding			Mal d 1-associated protein;(source:Araport11)
AT2G35980.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast. The mRNA is cell-to-cell mobile.	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT2G35820.1	protein_coding	ureidoglycolate hydrolases		ureidoglycolate hydrolase;(source:Araport11)
AT2G36070.1	protein_coding	translocase inner membrane subunit 44-2	One of two genes in Arabidopsis that encode a putative subunit of the mitochondrial inner membrane translocase complex. TIM44 subunit is thought to provide the energy for translocation via hydrolysis of ATP.	translocase inner membrane subunit 44-2;(source:Araport11)
AT2G35970.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT2G35810.1	protein_coding			ureidoglycolate hydrolase;(source:Araport11)
AT2G35960.1	protein_coding	NDR1/HIN1-like 12	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.	NDR1/HIN1-like 12;(source:Araport11)
AT2G35890.1	protein_coding	calcium-dependent protein kinase 25	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 25;(source:Araport11)
AT2G36010.1	protein_coding	E2F transcription factor 3	Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway.	E2F transcription factor 3;(source:Araport11)
AT2G35800.1	protein_coding	mitochondrial substrate carrier family protein	Encodes a predicted calcium-dependent S-adenosyl methionine carrier.	mitochondrial substrate carrier family protein;(source:Araport11)
AT2G35950.1	protein_coding	embryo sac development arrest 12		embryo sac development arrest 12;(source:Araport11)
AT2G35880.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family		TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT2G36000.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT2G36060.1	protein_coding	MMS ZWEI homologue 3	MMZ3/UEV1C encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1C can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ3/UEV1C transcripts are found at moderate levels in most plant organs, but cannot be detected in the pollen or 2 days after germination. Transcript levels do not appear to be stress-inducible.	MMS ZWEI homologue 3;(source:Araport11)
AT2G35940.1	protein_coding	BEL1-like homeodomain 1	Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles.  Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.	BEL1-like homeodomain 1;(source:Araport11)
AT2G35930.1	protein_coding	plant U-box 23	Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.	plant U-box 23;(source:Araport11)
AT2G35860.1	protein_coding	FASCICLIN-like arabinogalactan protein 16 precursor	Fasciclin-like arabinogalactan protein. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan protein 16 precursor;(source:Araport11)
AT2G35920.1	protein_coding	RNA helicase family protein		RNA helicase family protein;(source:Araport11)
AT2G35850.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G36050.1	protein_coding	ovate family protein 15		ovate family protein 15;(source:Araport11)
AT2G35840.1	protein_coding	Sucrose-6F-phosphate phosphohydrolase family protein		Sucrose-6F-phosphate phosphohydrolase family protein;(source:Araport11)
AT2G36040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30610.1);(source:TAIR10)
AT2G35830.1	protein_coding			ureidoglycolate hydrolase;(source:Araport11)
AT2G36030.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G36020.1	protein_coding	HVA22-like protein J		HVA22-like protein J;(source:Araport11)
AT2G48140.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G48150.1	protein_coding	glutathione peroxidase 4	Encodes glutathione peroxidase.	glutathione peroxidase 4;(source:Araport11)
AT2G48160.1	protein_coding	Tudor/PWWP/MBT domain-containing protein	HUA and HUA-LIKE (HULK) genes act redundantly to regulate a subset of essential genes, with some (or all) family members also having specific functions.	Tudor/PWWP/MBT domain-containing protein;(source:Araport11)
AT2G48120.1	protein_coding	pale cress protein (PAC)	The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC binds 23srRNA and appears to be required for  50s ribosome assembly. Three alternative transcripts of this gene exist.PAC is essential for photoautotrophic growth and associates with psbK-psbI, ndhF, ndhD, and 23S ribosomal RNA in vivo(PMID:28805278)	pale cress protein (PAC);(source:Araport11)
AT2G48130.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a plasma membrane-localized glycosylphosphatidylinositol-anchored lipid transfer protein expressed in root endodermis and seed coats that is involved in very long chain fatty acid (and their derivatives) transport.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G16920.1	protein_coding	ubiquitin-conjugating enzyme 23		ubiquitin-conjugating enzyme 23;(source:Araport11)
AT2G16930.1	protein_coding	Ribosomal protein L27 family protein		Ribosomal protein L27 family protein;(source:Araport11)
AT2G16940.1	protein_coding	Splicing factor, CC1-like		Splicing factor, CC1-like protein;(source:Araport11)
AT2G16870.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G16950.1	protein_coding	transportin 1	TRN1 is an importin beta protein that functions as a nuclear import receptor for AtGRP7 and in interacts with AGO1 to affect miRNA loading.	transportin 1;(source:Araport11)
AT2G16880.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G16960.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT2G16890.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G16970.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G16900.1	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G16980.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G16910.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix-loop helix transcription factor involved in tapetal cell development, that directly regulates MGT5 expression in tapetum cells. Loss of function mutations are male sterile. AMS binds to a region termed the E box of target gene promoters.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G16990.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G26780.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT2G26860.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT2G26940.1	protein_coding	C2H2-type zinc finger family protein		C2H2-type zinc finger family protein;(source:Araport11)
AT2G26850.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G26930.1	protein_coding	4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase	Encodes a 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase.	4-(cytidine 5-phospho)-2-C-methyl-D-erithritol kinase;(source:Araport11)
AT2G26840.1	protein_coding		Encodes a Holliday junction resolvase that binds and cleaves the core of Holliday junctions symmetrically. It appears to mediate chloroplast nucleoid segregation during chloroplast division.	MutS2;(source:Araport11)
AT2G26920.1	protein_coding	Ubiquitin-associated/translation elongation factor EF1B protein		Ubiquitin-associated/translation elongation factor EF1B protein;(source:Araport11)
AT2G26830.1	protein_coding	Protein kinase superfamily protein	Encodes a member of a small family of choline/ethanolamine kinases that is localized to the plasma membrane. Homozygous loss of function alleles are embryo lethal. Overexpression results in altered phospholipid levels suggesting a critical role in phospholipid biosynthesis.	Protein kinase superfamily protein;(source:Araport11)
AT2G26910.1	protein_coding	pleiotropic drug resistance 4	Encodes a member of the PLEIOTROPIC DRUG RESISTANCE family of ATP binding cassette transporters.  Required for the formation of a functional cuticle.	pleiotropic drug resistance 4;(source:Araport11)
AT2G26820.1	protein_coding	phloem protein 2-A3		phloem protein 2-A3;(source:Araport11)
AT2G26900.1	protein_coding	Sodium Bile acid symporter family		Sodium Bile acid symporter family;(source:Araport11)
AT2G26810.1	protein_coding	Putative methyltransferase family protein		Putative methyltransferase family protein;(source:Araport11)
AT2G26890.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein	GRV2 has sequence similarity to the C. elegans protein RME-8 which is involved in endocytosis.  grv2 mutants result in a reduction in gravitropic response in hypocotyls and shoots but do not affect root gravitropism. The mutants are defective in amyloplast sedimentation.	DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT2G26800.1	protein_coding	Aldolase superfamily protein	Mutant has increased seed ile, leu and val as well as his and arg.	Aldolase superfamily protein;(source:Araport11)
AT2G26880.1	protein_coding	AGAMOUS-like 41		AGAMOUS-like 41;(source:Araport11)
AT2G26790.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G26870.1	protein_coding	non-specific phospholipase C2		non-specific phospholipase C2;(source:Araport11)
AT2G27230.1	protein_coding	transcription factor-related	Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins.  It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots.	transcription factor-like protein;(source:Araport11)
AT2G27310.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G27300.1	protein_coding	NTM1-like 8	NTL8 is a membrane-associated NAC transcription factor that binds both TRY and TCL1. Overexpression results in fewer trichomes.	NTM1-like 8;(source:Araport11)
AT2G27220.1	protein_coding	BEL1-like homeodomain 5		BEL1-like homeodomain 5;(source:Araport11)
AT2G27290.1	protein_coding	Protein of unknown function (DUF1279)		FAM210B-like protein, putative (DUF1279);(source:Araport11)
AT2G27280.1	protein_coding	Coiled-coil domain-containing protein 55 (DUF2040)		coiled-coil protein (DUF2040);(source:Araport11)
AT2G27270.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G27260.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT2G27250.1	protein_coding	CLAVATA3	One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis.  Belongs to a large gene family called CLE for CLAVATA3/ESR-related.  Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone.  The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide.  The functional form of CLV3 (MCLV3) was first reported to be a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline (Ito et al., Science 2006, 313:842; Kondo et al., Science 2006, 313:845).  Ohyama et al. (2009) later reported that the active mature CLV3 is a 13-amino-acid arabinosylated glycopeptide (Nature Chemical Biology, 5:578).  CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein.  It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function. Results obtained from whole seedlings challenge the concept that the immune receptor FLS2 perceives the meristematic regulatory peptide CLV3p in mesophyll, seedlings, and SAM cells and that CLV3p contributes to SAM immunity against bacterial infection (PMID:22923673).	CLAVATA3;(source:Araport11)
AT2G27350.1	protein_coding	OTU-like cysteine protease family protein	Encodes an otubain-like histone deubiquitinase involved in chromatin modification and regulation of plant gene expression.	OTU-like cysteine protease family protein;(source:Araport11)
AT2G27320.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT2G27240.1	protein_coding	Aluminium activated malate transporter family protein		aluminum activated malate transporter family protein;(source:Araport11)
AT2G39420.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G39350.1	protein_coding	ABC-2 type transporter family protein	Belongs to a clade of five Arabidopsis thaliana ABCG half-transporters that are required for synthesis of an effective suberin barrier in roots and seed coats (ABCG2, ABCG6, and ABCG20) and for synthesis of an intact pollen wall (ABCG1 and ABCG16).	ABC-2 type transporter family protein;(source:Araport11)
AT2G39440.1	protein_coding			ribonuclease H2 subunit C-like protein;(source:Araport11)
AT2G39520.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G39450.1	protein_coding	Cation efflux family protein	Encodes a Golgi-localized manganese transporter that is involved in Mn tolerance. When expressed into yeast cells, this gene confer Mn<sup>2+</sup> and Cu<sup>2+</sup> tolerance.	Cation efflux family protein;(source:Araport11)
AT2G39530.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT2G39630.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Encodes a putative dolichyl-phosphate &beta;-glucosyltransferase.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT2G39460.1	protein_coding	ribosomal protein L23AA	Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.	ribosomal protein L23AA;(source:Araport11)
AT2G39360.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G39370.1	protein_coding		Encodes a member of the MAKR (MEMBRANE-ASSOCIATED KINASE REGULATOR)  gene family. MAKRs have putative kinase interacting motifs and membrane localization signals. Known members include: AT5G26230 (MAKR1), AT1G64080 (MAKR2), AT2G37380 (MAKR3), AT2G39370 (MAKR4), AT5G52870 (MAKR5) and AT5G52900 (MAKR6).	membrane-associated kinase regulator;(source:Araport11)
AT2G39470.1	protein_coding	PsbP-like protein 2		PsbP-like protein 2;(source:Araport11)
AT2G39540.1	protein_coding	Gibberellin-regulated family protein		Gibberellin-regulated family protein;(source:Araport11)
AT2G39430.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT2G39480.1	protein_coding	P-glycoprotein 6		P-glycoprotein 6;(source:Araport11)
AT2G39550.1	protein_coding	Prenyltransferase family protein	encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways.	Prenyltransferase family protein;(source:Araport11)
AT2G39490.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G39560.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT2G39500.1	protein_coding			hexose transporter;(source:Araport11)
AT2G39570.1	protein_coding	ACT domain-containing protein	Encodes a ACT domain-containing protein.  The ACT domain, named after bacterial aspartate kinase, chorismate mutase and TyrA (prephenate dehydrogenase), is a regulatory domain that serves as an amino acid-binding site in feedback-regulated amino acid metabolic enzymes.	ACT domain-containing protein;(source:Araport11)
AT2G39380.1	protein_coding	exocyst subunit exo70 family protein H2	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein H2;(source:Araport11)
AT2G39510.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	Encodes a plasma membrane-localized amino acid transporter likely involved in amino acid export in the developing seed.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT2G39580.1	protein_coding			zinc finger C3H1 domain protein;(source:Araport11)
AT2G39390.1	protein_coding	Ribosomal L29 family protein 		Ribosomal L29 family protein;(source:Araport11)
AT2G39590.1	protein_coding	Ribosomal protein S8 family protein		40S ribosomal protein S15a;(source:Araport11)
AT2G39400.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G39620.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G39410.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G10480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 3.1e-143 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT2G10390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1);(source:TAIR10)
AT2G10460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07450.1);(source:TAIR10)
AT2G10380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36070.1);(source:TAIR10)
AT2G10450.1	protein_coding	14-3-3 family protein		14-3-3 family protein;(source:Araport11)
AT2G10370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44860.1);(source:TAIR10)
AT2G10440.1	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT2G10360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44870.1);(source:TAIR10)
AT2G10430.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT2G10350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G03970.1);(source:TAIR10)
AT2G10420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.7e-82 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G10410.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family	transposable_element_gene;(source:Araport11)
AT2G10330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.7e-176 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G10400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.7e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G10320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.3e-75 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G46570.1	protein_coding	laccase 6	putative laccase,  a member of laccase family of genes (with 17 members in Arabidopsis).	laccase 6;(source:Araport11)
AT2G46580.1	protein_coding	Pyridoxamine 5'-phosphate oxidase family protein		Pyridoxamine 5-phosphate oxidase family protein;(source:Araport11)
AT2G46590.1	protein_coding	Dof-type zinc finger DNA-binding family protein	Encodes a protein containing Dof zinc finger motifs that is a positive regulator of light-mediated seed germination. Its expression is limited to vascular system of the mother plant. A recessive mutation is inherited as maternal-effect and expression is not detected in the embryo. Mutants are defective in seed germination and are more dependent on light and cold treatment and less sensitive to gibberellin during seed germination.  It plays its main role downstream of PIL5 and DAG1 in the phytochrome B (phyB)-mediated pathway.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT2G46600.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT2G46610.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G46620.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G46540.1	protein_coding			fiber;(source:Araport11)
AT2G46550.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G46560.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G25350.1	protein_coding	Phox (PX) domain-containing protein		Phox (PX) domain-containing protein;(source:Araport11)
AT2G25440.1	protein_coding	receptor like protein 20		receptor like protein 20;(source:Araport11)
AT2G25520.1	protein_coding	Drug/metabolite transporter superfamily protein		Drug/metabolite transporter superfamily protein;(source:Araport11)
AT2G25450.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Encodes a 2-oxoacid-dependent dioxygenase involved in the production of 2-hydroxybut-3-enyl glucosinolate.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G25530.1	protein_coding	AFG1-like ATPase family protein		AFG1-like ATPase family protein;(source:Araport11)
AT2G25460.1	protein_coding			EEIG1/EHBP1 protein amino-terminal domain protein;(source:Araport11)
AT2G25470.1	protein_coding	receptor like protein 21		receptor like protein 21;(source:Araport11)
AT2G25540.1	protein_coding	cellulose synthase 10	cellulose synthase	cellulose synthase A catalytic subunit 3 UDP-forming-like protein;(source:Araport11)
AT2G25410.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G25480.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family		TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT2G25550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.1e-44 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT2G25420.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G25490.1	protein_coding	EIN3-binding F box protein 1	Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. The mRNA is cell-to-cell mobile.	EIN3-binding F box protein 1;(source:Araport11)
AT2G25560.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT2G25430.1	protein_coding	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	AP180 N-terminal homology domain, TPLATE complex protein involved in clathrin-mediated endocytosis.	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein;(source:Araport11)
AT2G25500.1	protein_coding	Inosine triphosphate pyrophosphatase family protein		Inosine triphosphate pyrophosphatase family protein;(source:Araport11)
AT2G25510.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G25580.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G25140.1	protein_coding	casein lytic proteinase B4	Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Targeted to the mitochondrion, also referred to as ClpB-m.  Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress.	casein lytic proteinase B4;(source:Araport11)
AT2G25150.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT2G25160.1	protein_coding	cytochrome P450, family 82, subfamily F, polypeptide 1		cytochrome P450, family 82, subfamily F, polypeptide 1;(source:Araport11)
AT2G25080.1	protein_coding	glutathione peroxidase 1	Encodes glutathione peroxidase. The mRNA is cell-to-cell mobile.	glutathione peroxidase 1;(source:Araport11)
AT2G25170.1	protein_coding	chromatin remodeling factor CHD3 (PICKLE)	Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1.  Is an extragenic suppressor of slr2 (SSL2).  Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1.  It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis. The mRNA is cell-to-cell mobile.	chromatin remodeling factor CHD3 (PICKLE);(source:Araport11)
AT2G25100.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G25180.1	protein_coding	response regulator 12	Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Also involved in cytokinin-dependent inhibition of hypocotyl elongation and cytokinin-dependent greening and shooting in tissue culture. ARR1, ARR10, and ARR12 are redundant regulators of drought response, with ARR1 being the most critical.The retention of leaf water content, maintenance of cell membrane stability, and enhancement of anthocyanin biosynthesis were found to contribute to the enhanced drought tolerance of the arr1,10,12 triple mutant. ARR1, ARR10 and ARR12 redundantly bind to the promoter of WUSCHEL (WUS), directly activate its transcription. In parallel, ARR1, ARR10 and ARR12 repress the expression of YUCCAs (YUCs), which encode a key enzyme for auxin biosynthesis, indirectly promoting WUS induction. The regulation of ARR1, ARR10 and ARR12 on WUS and YUCs is required for regeneration and maintenance of shoot meristem.	response regulator 12;(source:Araport11)
AT2G25110.1	protein_coding	stromal cell-derived factor 2-like protein precursor	Encodes an endoplasmic reticulum protein SDF2 (stromal-derived factor-2).  Forms a complex SDF2-ERdj3B-BiP that is required for the proper accumulation of the surface-exposed leucine-rich repeat receptor kinases EFR.  EFR is involved in PAMP (pathogen associated molecular patterns) triggered immunity.	stromal cell-derived factor 2-like protein precursor;(source:Araport11)
AT2G25120.1	protein_coding	Bromo-adjacent homology (BAH) domain-containing protein		Bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT2G25130.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT2G25090.1	protein_coding	CBL-interacting protein kinase 16	Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.18), which has also been reported as a member of the CBL-interacting protein kinases (CIPK16) and is involved in salinity tolerance.	CBL-interacting protein kinase 16;(source:Araport11)
AT2G41440.1	protein_coding			agamous-like MADS-box protein;(source:Araport11)
AT2G41350.1	protein_coding		Encodes AUG1, likely to be in an augmin-like complex with AUG3.	HAUS augmin-like complex subunit;(source:Araport11)
AT2G41260.1	protein_coding	glycine-rich protein / late embryogenesis abundant protein (M17)	Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.	glycine-rich protein / late embryogenesis abundant protein (M17);(source:Araport11)
AT2G41340.1	protein_coding	RNA polymerase II fifth largest subunit, D	NRPE5-like protein of unknown function; homologous to budding yeast RPB5	RNA polymerase II fifth largest subunit, D;(source:Araport11)
AT2G41390.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT2G41330.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT2G41250.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G41380.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G41310.1	protein_coding	response regulator 3	Encodes an A- type response Regulator that is primarily expressed in the root and is involved in cytokinin-mediated signalling.	response regulator 3;(source:Araport11)
AT2G41240.1	protein_coding	basic helix-loop-helix protein 100	Encodes a member of the basic helix-loop-helix transcription factor family protein. Functions as a key regulator of iron-deficiency responses independent of the master regulator FIT. Likely regulates genes involved in the distribution of iron within the plant.	basic helix-loop-helix protein 100;(source:Araport11)
AT2G41370.1	protein_coding	Ankyrin repeat family protein / BTB/POZ domain-containing protein	Encodes BOP2, a cytoplasmic and nuclear-localized NPR1 like protein with BTB/POZ domain and ankyrin repeats. Interacts with BOP1 and appears to be genetically redundant with BOP1.bop1/bop2 double mutants have longer leaves, often with leaflets on the petiole, asymmetric flowers with extra organs and no nectaries. Also defective in floral organ abscission.  BOP1/2 promotes floral meristem fate and determinacy in a pathway targetting APETALA1 and AGAMOUS-LIKE24. PUCHI, BOP1 and BOP2 are redundantly required for expression of LFY and AP1. BOP2 is expressed in valve margin. Misexpression in stems causes short internodes and ectopic biosynthesis of lignin. BOP2 activity is antagonistic to BP (At4g08150) and PNY (At5g02030). BOP3 expression is restricted to pedicel axils by BP and PNY. BOP2 promotes KNAT6 (At1g23380) expression.	Ankyrin repeat family protein / BTB/POZ domain-containing protein;(source:Araport11)
AT2G41300.1	protein_coding	strictosidine synthase-like 1	Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.	strictosidine synthase-like 1;(source:Araport11)
AT2G41230.1	protein_coding		Encodes an ER-localized plant hormone-responsive gene and appears to act redundantly with ARGOS and ARL during organ growth. Over-expression modifies plant sensitivity to ethylene, leading to improved drought tolerance.	ORGAN SIZE-like protein;(source:Araport11)
AT2G41360.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		galactose oxidase/kelch repeat protein;(source:Araport11)
AT2G41290.1	protein_coding	strictosidine synthase-like 2	Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.	strictosidine synthase-like 2;(source:Araport11)
AT2G41220.1	protein_coding	glutamate synthase 2	Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root. The mRNA is cell-to-cell mobile.	glutamate synthase 2;(source:Araport11)
AT2G41280.1	protein_coding	late embryogenesis abundant protein (M10) / LEA protein M10	Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of desiccation tolerance.	late embryogenesis abundant protein (M10) / LEA protein M10;(source:Araport11)
AT2G41210.1	protein_coding	phosphatidylinositol- 4-phosphate 5-kinase 5	Encodes a protein with phosphatidylinositol-4-phosphate 5-kinase activity that plays a role in pollen tip growth. The enzyme localizes to the apical plasma membrane and adjacent cytosolic region of pollen tubes. Overexpression of this gene leads to increased deposition of pectin in the cell wall at the tip of the pollen tube and causes altered pollen tube morphology.	phosphatidylinositol- 4-phosphate 5-kinase 5;(source:Araport11)
AT2G41420.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT2G41270.1	pseudogene			pseudogene of strictosidine synthase-like 2;(source:Araport11)
AT2G41410.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT2G41400.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT2G38780.1	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT2G38800.1	protein_coding	Plant calmodulin-binding protein-related		Plant calmodulin-binding protein-like protein;(source:Araport11)
AT2G38810.1	protein_coding	histone H2A 8	Encodes HTA8, a histone H2A protein. Loss of all H2A.Z (triple mutant with HTA9 and HTA11) results in a reduction in DNA methylation of transposons but not that of genes.  Loss of H2A.Z causes misregulation of many genes involved in the response to developmental and environmental cues, and that these genes tend to have high levels of gene-body H2A.Z.	histone H2A 8;(source:Araport11)
AT2G38820.1	protein_coding	Protein of unknown function (DUF506) 		DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506);(source:Araport11)
AT2G38830.1	protein_coding	Ubiquitin-conjugating enzyme/RWD-like protein		Ubiquitin-conjugating enzyme/RWD-like protein;(source:Araport11)
AT2G38840.1	protein_coding	Guanylate-binding family protein		Guanylate-binding family protein;(source:Araport11)
AT2G13750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-17 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G13760.1	protein_coding			no-apical-meristem-associated carboxy-terminal domain protein;(source:Araport11)
AT2G13740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G13770.1	protein_coding			nuclease;(source:Araport11)
AT2G13790.1	protein_coding	somatic embryogenesis receptor-like kinase 4		somatic embryogenesis receptor-like kinase 4;(source:Araport11)
AT2G13800.1	protein_coding	somatic embryogenesis receptor-like kinase 5		somatic embryogenesis receptor-like kinase 5;(source:Araport11)
AT2G13720.1	protein_coding	DNA topoisomerase (ATP-hydrolyzing)s;ATP binding;DNA binding		putative DNA topoisomerase;(source:Araport11)
AT2G13730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT2G36700.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G36780.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G36710.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G36790.1	protein_coding	UDP-glucosyl transferase 73C6	The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl residue to the 7-O-position of the flavonols kaempferol, quercetin and their 3-O-glycoside derivatives.	UDP-glucosyl transferase 73C6;(source:Araport11)
AT2G36670.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT2G36720.1	protein_coding	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain		Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein;(source:Araport11)
AT2G36680.1	protein_coding	Modifier of rudimentary (Mod(r)) protein		Modifier of rudimentary (Mod(r)) protein;(source:Araport11)
AT2G36730.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G36800.1	protein_coding	don-glucosyltransferase 1	Encodes a DON-Glucosyltransferase.  The UGT73C5 glucosylates both brassinolide and castasterone in the 23-O position. The enzyme is presumably involved in the homeostasis of those steroid hormones hence regulating BR activity. Transgenic plants overexpressing UGT73C5 show a typical BR-deficient phenotype.	don-glucosyltransferase 1;(source:Araport11)
AT2G36690.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Protein belonging to the Fe-dependent 2-oxoglutarate dioxygenase superfamily, catalyzes the stereospecific hydration of GA12 to produce DHGA12, negatively regulates ABA sensitivity during germination, phototrophic establishment and seedling development.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G36740.1	protein_coding	sequence-specific DNA binding transcription factors;DNA binding;DNA binding		DNA binding protein SWC2;(source:Araport11)
AT2G36810.1	protein_coding	ARM repeat superfamily protein	Specifically involved in gravity perception and/or gravity signal transduction for the shoot gravitropic response. Effects gravitropism only in inflorescence stems but normal in both hypocotyls and roots.	ARM repeat superfamily protein;(source:Araport11)
AT2G36750.1	protein_coding	UDP-glucosyl transferase 73C1		UDP-glucosyl transferase 73C1;(source:Araport11)
AT2G36760.1	protein_coding	UDP-glucosyl transferase 73C2		UDP-glucosyl transferase 73C2;(source:Araport11)
AT2G36770.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G36640.1	protein_coding	embryonic cell protein 63	Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.	embryonic cell protein 63;(source:Araport11)
AT2G36650.1	protein_coding			CHUP1-like protein;(source:Araport11)
AT2G36660.1	protein_coding	poly(A) binding protein 7	polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins.	poly(A) binding protein 7;(source:Araport11)
AT2G37620.1	protein_coding	actin 1	Member of the actin gene family. Expressed in mature pollen.	actin 1;(source:Araport11)
AT2G37530.1	protein_coding			forkhead box protein G1;(source:Araport11)
AT2G37700.1	protein_coding	Fatty acid hydroxylase superfamily		Fatty acid hydroxylase superfamily;(source:Araport11)
AT2G37630.1	protein_coding	myb-like HTH transcriptional regulator family protein	Encodes a MYB-domain protein involved in specification of the leaf proximodistal axis. Mutation results in lobed and dissected leaves with a characteristic asymmetry. Homologous to the Antirrhinum PHANTASTICA (PHAN) and maize ROUGH SHEATH2 (RS2) genes  Asymmetric placement of auxin response at the distal leaf tip precedes visible asymmetric leaf growth.  Acts alongside AXR1 to exclude BP expression in leaves and with PIN1 to repress BP and promote lateral organ growth. Interacts physically with AS2 to form a complex that binds to the BP promoter and silences BP.  Also functions as a regulator of the plant immune response.	myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT2G37540.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G37710.1	protein_coding	receptor lectin kinase	Induced in response to Salicylic acid. The mRNA is cell-to-cell mobile.	receptor lectin kinase;(source:Araport11)
AT2G37640.1	protein_coding	Barwin-like endoglucanases superfamily protein	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	Barwin-like endoglucanases superfamily protein;(source:Araport11)
AT2G37550.1	protein_coding	ARF-GAP domain 7	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	ARF-GAP domain 7;(source:Araport11)
AT2G37650.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT2G37560.1	protein_coding	origin recognition complex second largest subunit 2	Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits.	origin recognition complex second largest subunit 2;(source:Araport11)
AT2G37660.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G37570.1	protein_coding	HSP20-like chaperones superfamily protein	encodes a protein that can complement the salt-sensitive phenotype of a calcineurin (CaN)-deficient yeast mutant. This gene occurs in a single-copy and is 75% identical to tobacco SLT1 gene.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT2G37670.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G37580.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G37590.1	protein_coding	DNA binding with one finger 2.4	PEAR protein involved in the formation of a short-range concentration gradient that peaks at protophloem sieve elements, and activates gene expression that promotes radial growth. Locally promotes transcription of inhibitory HD-ZIP III genes, and thereby establishes a negative-feedback loop that forms a robust boundary that demarks the zone of cell division.	DNA binding with one finger 2.4;(source:Araport11)
AT2G37600.1	protein_coding	Ribosomal protein L36e family protein		Ribosomal protein L36e family protein;(source:Araport11)
AT2G37680.1	protein_coding			glucose-induced degradation-like protein;(source:Araport11)
AT2G37610.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G37690.1	protein_coding	phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative		phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase;(source:Araport11)
AT2G34340.1	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT2G34260.1	protein_coding	transducin family protein / WD-40 repeat family protein	Encodes a WDxR motif-containing protein that is required for gametogenesis, seed and endosperm development.	transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G34350.1	protein_coding	Nodulin-like / Major Facilitator Superfamily protein		Nodulin-like / Major Facilitator Superfamily protein;(source:Araport11)
AT2G34270.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G34180.1	protein_coding	CBL-interacting protein kinase 13	Encodes CBL-interacting protein kinase 13 (CIPK13).	CBL-interacting protein kinase 13;(source:Araport11)
AT2G34280.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G34360.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT2G34290.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G34220.1	protein_coding	Protein with domains of unknown function (DUF627 and DUF629)		ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629);(source:Araport11)
AT2G34370.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G34300.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G34230.1	protein_coding	Protein with domains of unknown function (DUF627 and DUF629)		ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629);(source:Araport11)
AT2G34190.1	protein_coding	Xanthine/uracil permease family protein		Xanthine/uracil permease family protein;(source:Araport11)
AT2G34310.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G34240.1	protein_coding	Protein with domains of unknown function DUF627 and DUF632		ubiquitin carboxyl-terminal hydrolase-like protein, putative (Protein with domains of unknown function DUF627 and DUF632);(source:Araport11)
AT2G34320.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G34250.1	protein_coding	SecY protein transport family protein		SecY protein transport family protein;(source:Araport11)
AT2G34330.1	protein_coding			LOW protein: protein BOBBER-like protein;(source:Araport11)
AT2G34200.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G34210.1	protein_coding	Transcription elongation factor Spt5		Transcription elongation factor Spt5;(source:Araport11)
AT2G43240.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT2G43160.1	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT2G43250.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G43180.1	protein_coding	Phosphoenolpyruvate carboxylase family protein		Phosphoenolpyruvate carboxylase family protein;(source:Araport11)
AT2G43260.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G43190.1	protein_coding	ribonuclease P family protein	Encodes a protein involved in rRNA but not tRNA maturation.	ribonuclease P family protein;(source:Araport11)
AT2G43120.1	protein_coding	RmlC-like cupins superfamily protein	Encodes a member of the functionally diverse cupin protein superfamily that is involved in susceptibility to the bacterial plant pathogen Ralstonia solanacearum.  It stabilizes the papain-like cysteine protease XCP2. The mRNA is cell-to-cell mobile.	RmlC-like cupins superfamily protein;(source:Araport11)
AT2G43200.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G43130.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	encodes a protein belonging to the Rab/Ypt family of small GTPases, which are implicated in intracellular vesicular traffic.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G43210.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT2G43140.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	bHLH129 is a nuclear localized basic helix loop helix protein. It has been shown to function as a transcriptional repressor. Overexpression of bHLH129 regulates root elongation and ABA response.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G43220.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G43150.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT2G43230.1	protein_coding	Protein kinase superfamily protein	Member of cytosolic ABA receptor kinases; interacts with ABA receptors RCAR11-14. Positively regulates germination, seedling architecture and root growth in response to ABA.	Protein kinase superfamily protein;(source:Araport11)
AT2G01980.1	protein_coding	sodium proton exchanger, putative (NHX7) (SOS1)	Encodes a plasma membrane-localized Na+/H+ antiporter SOS1.  Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance.  Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance.	sodium proton exchanger, putative (NHX7) (SOS1);(source:Araport11)
AT2G01940.1	protein_coding	C2H2-like zinc finger protein	Encodes a transcription factor that, together with IDD14 and IDD16, regulates auxin biosynthesis and transport and thus aerial organ morphogenesis and gravitropic responses. May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.	C2H2-like zinc finger protein;(source:Araport11)
AT2G01990.1	protein_coding			XRI1-like protein;(source:Araport11)
AT2G02030.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G02000.1	protein_coding	glutamate decarboxylase 3		glutamate decarboxylase 3;(source:Araport11)
AT2G02040.1	protein_coding	peptide transporter 2	Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.	peptide transporter 2;(source:Araport11)
AT2G02010.1	protein_coding	glutamate decarboxylase 4		glutamate decarboxylase 4;(source:Araport11)
AT2G02050.1	protein_coding	NADH-ubiquinone oxidoreductase B18 subunit, putative		NADH-ubiquinone oxidoreductase B18 subunit;(source:Araport11)
AT2G02020.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G01950.1	protein_coding	BRI1-like 2	Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein.	BRI1-like 2;(source:Araport11)
AT2G01960.1	protein_coding	tetraspanin14	Member of TETRASPANIN family	tetraspanin14;(source:Araport11)
AT2G01970.1	protein_coding	Endomembrane protein 70 protein family		Endomembrane protein 70 protein family;(source:Araport11)
AT2G22500.1	protein_coding	uncoupling protein 5	Encodes one of the mitochondrial dicarboxylate carriers (DIC): DIC1 (AT2G22500), DIC2 (AT4G24570), DIC3 (AT5G09470).	uncoupling protein 5;(source:Araport11)
AT2G22420.1	protein_coding	Peroxidase superfamily protein	Encodes a cell wall-localized class III peroxidase that is directly regulated by the MADS-box transcription factor AGL15 and is involved in lignified tissue formation.	Peroxidase superfamily protein;(source:Araport11)
AT2G22490.1	protein_coding	Cyclin D2;1	encodes a D-type cyclin whose transcription level is regulated by sucrose but not phytohormones or nitrate. Protein physically interacts with CDC2A. CycD2 kinase activity is regulated by sequestration of CycD2 protein in a form inaccessible to immunoprecipitation and probably not complexed to CDC2A.	Cyclin D2;(source:Araport11)
AT2G22410.1	protein_coding	SLOW GROWTH 1		SLOW GROWTH 1;(source:Araport11)
AT2G22560.1	protein_coding	Kinase interacting (KIP1-like) family protein		Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT2G22480.1	protein_coding	phosphofructokinase 5		phosphofructokinase 5;(source:Araport11)
AT2G22400.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	TRM4B is a cytosine-5--methyltransferase. Mutants have decreased methyl cytosine and defects in root development.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G22470.1	protein_coding	arabinogalactan protein 2	Encodes arabinogalactan-protein (AGP2).	arabinogalactan protein 2;(source:Araport11)
AT2G22390.1	pseudogene		Encodes an unusual RabA family member as it has a Lysine the position of the highly conserved Glu of the WDTAGQE motif and has the sequence CVAA! at its C-ter rather than the conventional CCXX(X) or CXC motifs that promote geranylgeranylation and membrane anchoring.	pseudogene of RAB GTPase homolog A4B;(source:Araport11)
AT2G22540.1	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway.  SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT2G22460.1	protein_coding	Protein of unknown function, DUF617		MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT2G22370.1	protein_coding		Encodes a subunit of the mediator complex that affects flowering time and floral organ formation through FLOWERING LOCUS C (FLC) and AGAMOUS (AG). Together with MED20, another subunit of the head domain of MEDIATOR, MED18 is proposed to control the balance of salicylic acid and jasmonate associated defense pathways.	mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT2G22530.1	protein_coding	Alkaline-phosphatase-like family protein		Alkaline-phosphatase-like family protein;(source:Araport11)
AT2G22450.1	protein_coding	riboflavin biosynthesis protein, putative		riboflavin biosynthesis protein;(source:Araport11)
AT2G22360.1	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT2G22520.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G22440.1	protein_coding			non-LTR retroelement reverse transcriptase;(source:Araport11)
AT2G22350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1);(source:TAIR10)
AT2G22510.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G22430.1	protein_coding	homeobox protein 6	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein that is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis.	homeobox protein 6;(source:Araport11)
AT2G22340.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G47160.1	protein_coding	HCO3- transporter family	Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. Localized to the  inner plasma membrane domain in the columella, lateral root cap,  epidermis, and endodermis in the root tip region, and in the  epidermis and endodermis in the elongation zone. Under high-boron is transported to the vacuole for degradation.	HCO3- transporter family;(source:Araport11)
AT2G46990.1	protein_coding	indole-3-acetic acid inducible 20	Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.	indole-3-acetic acid inducible 20;(source:Araport11)
AT2G47070.1	protein_coding	squamosa promoter binding protein-like 1	member of SPL gene family, encodes DNA binding proteins and putative transcription factors.  All have the SBP-box, which encodes the SBP-domain, required for and  sufficient for interaction with DNA.	squamosa promoter binding protein-like 1;(source:Araport11)
AT2G46980.1	protein_coding		Encodes ASY3, a coiled-coil domain protein that is required for normal meiosis.	asynaptic protein;(source:Araport11)
AT2G47060.1	protein_coding	Protein kinase superfamily protein	Encodes Pto-interacting 1-4 (PTI1-4), a member of the PTI1-like serine/threonine protein kinases that share strong sequence identity to the tomato PTI1 kinase.	Protein kinase superfamily protein;(source:Araport11)
AT2G46900.1	protein_coding			transcription factor-like protein;(source:Araport11)
AT2G47150.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G47050.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT2G47040.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily	Share high homologies with a group of pectin methylesterases (PME), pollen specific, and is required for enhancing the growth of pollen tube in style and transmitting tract tissues.	Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT2G46970.1	protein_coding	phytochrome interacting factor 3-like 1	encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.	phytochrome interacting factor 3-like 1;(source:Araport11)
AT2G47030.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT2G46960.1	protein_coding	cytochrome P450, family 709, subfamily B, polypeptide 1	member of CYP709B	cytochrome P450, family 709, subfamily B, polypeptide 1;(source:Araport11)
AT2G47140.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G46950.1	protein_coding	cytochrome P450, family 709, subfamily B, polypeptide 2		cytochrome P450, family 709, subfamily B, polypeptide 2;(source:Araport11)
AT2G47020.1	protein_coding	Peptide chain release factor 1		Peptide chain release factor 1;(source:Araport11)
AT2G46940.1	protein_coding			fold protein;(source:Araport11)
AT2G47010.1	protein_coding			calcium/calcium/calmodulin-dependent Serine/Threonine-kinase;(source:Araport11)
AT2G46930.1	protein_coding	Pectinacetylesterase family protein	Encodes a pectin acetylesterase that removes cell wall acetate associated with pectin formation in Arabidopsis leaves.	Pectinacetylesterase family protein;(source:Araport11)
AT2G47000.1	protein_coding	ATP binding cassette subfamily B4	Encodes an auxin efflux transmembrane transporter that is a member of the multidrug resistance  P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal  redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above and is involved in root hair elongation.	ATP binding cassette subfamily B4;(source:Araport11)
AT2G47130.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes a short-chain dehydrogenase/reductase that is not involved in ABA biosynthesis but plays an important role in plant defense response to bacteria.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G46920.1	protein_coding	Protein phosphatase 2C family protein	Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal.  Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.	Protein phosphatase 2C family protein;(source:Araport11)
AT2G47120.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G46910.1	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT2G47110.1	protein_coding	ubiquitin 6	polyubiquitin gene The mRNA is cell-to-cell mobile.	ubiquitin 6;(source:Araport11)
AT2G47090.1	protein_coding	zinc ion binding;nucleic acid binding		zinc ion binding/nucleic acid binding protein;(source:Araport11)
AT2G42550.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G42620.1	protein_coding	RNI-like superfamily protein	The mutations at  MAX2 cause increased hypocotyl and petiole elongation in  light-grown seedlings. Positional cloning identifies MAX2  as a member of the F-box leucine-rich repeat family of  proteins. MAX2 is identical to ORE9, a proposed regulator  of leaf senescence. Involved in positive regulation of light responses. The mRNA is cell-to-cell mobile.	RNI-like superfamily protein;(source:Araport11)
AT2G42540.1	protein_coding	cold-regulated 15a	A cold-regulated gene whose product is targeted to the chloroplast. Cor15am  protects stromal proteins from aggregation under various stress conditions. Constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.  Late Embryogenesis abundant protein (LEA). Protects chloroplast membranes during freezing.	cold-regulated 15a;(source:Araport11)
AT2G42610.1	protein_coding	Protein of unknown function (DUF640)		LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
AT2G42600.1	protein_coding	phosphoenolpyruvate carboxylase 2	Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.PPC1 and PPC2 are crucial for balancing carbon and nitrogen metabolism.	phosphoenolpyruvate carboxylase 2;(source:Araport11)
AT2G42530.1	protein_coding	cold regulated 15b	Encodes COR15B, a protein that protects chloroplast membranes during freezing.	cold regulated 15b;(source:Araport11)
AT2G42590.1	protein_coding	general regulatory factor 9	14-3-3 gene. Binds calcium and displays induced structural changes.	general regulatory factor 9;(source:Araport11)
AT2G42520.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G42650.1	protein_coding	Ribosomal protein L1p/L10e family		Ribosomal protein L1p/L10e family;(source:Araport11)
AT2G42580.1	protein_coding	tetratricopetide-repeat thioredoxin-like 3	Encodes a member of the TTL family and contains a thioredoxin like domain and three tandom TPRs. Interacts physically with BRL2/VH1 and appears to play a role in brassiosteroid and auxin signaling. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones. The TTL family is required for osmotic stress tolerance and male sporogenesis. The mRNA is cell-to-cell mobile.	tetratricopetide-repeat thioredoxin-like 3;(source:Araport11)
AT2G42510.1	protein_coding			survival motor neuron interacting protein;(source:Araport11)
AT2G42640.1	protein_coding	Mitogen activated protein kinase kinase kinase-related		Mitogen activated protein kinase kinase kinase-like protein;(source:Araport11)
AT2G42570.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 39	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 39;(source:Araport11)
AT2G42560.1	protein_coding	late embryogenesis abundant domain-containing protein / LEA domain-containing protein		late embryogenesis abundant domain-containing protein / LEA domain-containing protein;(source:Araport11)
AT2G13410.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT2G13400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, expressed protein;(source:TAIR10)
AT2G13390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.2e-234 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G13380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.1e-234 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G13370.1	protein_coding	chromatin remodeling 5		chromatin remodeling 5;(source:Araport11)
AT2G13360.1	protein_coding	alanine:glyoxylate aminotransferase	Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration.	alanine:glyoxylate aminotransferase;(source:Araport11)
AT2G11660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.8e-201 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G11490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28980.1);(source:TAIR10)
AT2G11570.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G11480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G11650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein,  and genefinder;(source:TAIR10)
AT2G11640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, replication protein A1;(source:TAIR10)
AT2G11530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-24 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G11630.1	pseudogene			pseudogene of hAT transposon superfamily protein;(source:Araport11)
AT2G11520.1	protein_coding	calmodulin-binding receptor-like cytoplasmic kinase 3	high overall homology to CRCK1	calmodulin-binding receptor-like cytoplasmic kinase 3;(source:Araport11)
AT2G11620.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G11510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.1e-64 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G11610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.6e-24 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G11500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.0e-151 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT2G11600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein,  and genefinder;(source:TAIR10)
AT2G11590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G15210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.6e-86 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G15200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to At2g04970, At1g32830, At2g14140, At3g30450, At4g03990, At5g34895, At3g47270, At2g02200;(source:TAIR10)
AT2G15160.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.8e-86 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G15190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT2G15150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.8e-84 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G15180.1	protein_coding	Zinc knuckle (CCHC-type) family protein		Zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT2G15140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT2G15170.1	protein_coding	Plant basic secretory protein (BSP) family protein		Plant basic secretory protein (BSP) family protein;(source:Araport11)
AT2G15240.1	protein_coding	UNC-50 family protein		UNC-50 family protein;(source:Araport11)
AT2G15230.1	protein_coding	lipase 1	Lipase active on medium and short chain triacylglycerols, but not on phospho- or galactolipids. Active between pH4 and 7 with an optimum at pH6. Knock-out mutant has not obvious phenotype. Predicted to be extracellular.	lipase 1;(source:Araport11)
AT2G15220.1	protein_coding	Plant basic secretory protein (BSP) family protein		Plant basic secretory protein (BSP) family protein;(source:Araport11)
AT2G10960.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.2e-18 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G11040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10970.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT2G11050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-211 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1);(source:TAIR10)
AT2G11060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 7.0e-150 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT2G10990.1	pseudogene			pseudogene of reverse transcriptase-like protein;(source:Araport11)
AT2G11070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G11000.1	protein_coding	MAK10 homologue	Encodes a non-functional Arabidopsis homolog of the yeast protein MAK10, a component of the N-terminal acetyltransferase complex C. Mutant plants have normal photosynthesis as well as growth rates and pigmentation comparable to wild type.	MAK10 homologue;(source:Araport11)
AT2G11080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.0e-05 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G11010.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G11090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07880.1);(source:TAIR10)
AT2G11020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.5e-181 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT2G11100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.0e-21 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10940.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G11030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10950.1	protein_coding	BSD domain-containing protein		BSD domain-containing protein;(source:Araport11)
AT2G27860.1	protein_coding	UDP-D-apiose/UDP-D-xylose synthase 1	Encodes UDP-d-apiose/UDP-d-xylose synthase that requires NAD+ for enzymatic activity and is strongly inhibited by UDP-d-galacturonate.	UDP-D-apiose/UDP-D-xylose synthase 1;(source:Araport11)
AT2G27670.1	protein_coding	Domain of unknown function DUF220		hypothetical protein (Domain of unknown function DUF220);(source:Araport11)
AT2G27740.1	protein_coding	Family of unknown function (DUF662) 		RAB6-interacting golgin (DUF662);(source:Araport11)
AT2G27840.1	protein_coding	histone deacetylase-related / HD-related	Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39	histone deacetylase-related / HD-like protein;(source:Araport11)
AT2G27660.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G27730.1	protein_coding	copper ion binding		copper ion binding protein;(source:Araport11)
AT2G27830.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G27650.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT2G27820.1	protein_coding	prephenate dehydratase 1	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis.  Not less than six genes encoding ADT were identi&#64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	prephenate dehydratase 1;(source:Araport11)
AT2G27810.1	protein_coding	nucleobase-ascorbate transporter 12	Encodes a plasma-membrane localized nucleobase transporter capable of transporting adenine, guanine, uracil and hypoxanthine. Likely to be a proton-nucleobase symporter.	nucleobase-ascorbate transporter 12;(source:Araport11)
AT2G27720.1	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT2G27800.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G27710.1	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT2G27790.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G27630.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT2G27780.1	protein_coding	Transcription factor IIS family protein		Transcription factor IIS family protein;(source:Araport11)
AT2G27770.1	protein_coding	Plant protein of unknown function (DUF868)		DUF868 family protein (DUF868);(source:Araport11)
AT2G27700.1	protein_coding	eukaryotic translation initiation factor 2 family protein / eIF-2 family protein		eukaryotic translation initiation factor 2 family protein / eIF-2 family protein;(source:Araport11)
AT2G27760.1	protein_coding	tRNAisopentenyltransferase 2	Encodes tRNA isopentenyltransferase, similar to yeast MOD5.	tRNAisopentenyltransferase 2;(source:Araport11)
AT2G27690.1	protein_coding	cytochrome P450, family 94, subfamily C, polypeptide 1	Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment.	cytochrome P450, family 94, subfamily C, polypeptide 1;(source:Araport11)
AT2G27750.1	protein_coding	Surfeit locus protein 6		Surfeit locus protein 6;(source:Araport11)
AT2G27680.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G05090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37080.1);(source:TAIR10)
AT2G05100.1	protein_coding	photosystem II light harvesting complex gene 2.1	Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a separate gene but appears to be an allele of LHCB2.1.	photosystem II light harvesting complex protein 2.1;(source:Araport11)
AT2G14220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.6e-167 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT2G14210.1	protein_coding	AGAMOUS-like 44	MADS box gene, transcription factor	AGAMOUS-like 44;(source:Araport11)
AT2G14200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.0e-133 P-value blast match to gb|AAO73523.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT2G13260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-121 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G13180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.1e-23 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G13250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.1e-91 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G13170.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.2e-88 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G13240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.1e-49 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G13230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.2e-157 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT2G13330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.0e-156 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT2G13320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14240.1);(source:TAIR10)
AT2G13310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-123 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G13200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.6e-05 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G13300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.8e-11 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT2G13190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.5e-06 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G13290.1	protein_coding	beta-1,4-N-acetylglucosaminyltransferase family protein		beta-1,4-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT2G13280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase,  blastp match of 27%25 identity and 7.6e-27 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G13270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1);(source:TAIR10)
AT2G44610.1	protein_coding	Ras-related small GTP-binding family protein	Golgi-localized small GTPase, participates in the trafficking of CESA6 to the plasma membrane, maintaining Golgi organization and morphology, possible role in exocytosis. Plays and important role in hypocotyl growth by influencing cell elongation/growth and deposition of cellulose microfibrils in the cell wall. Plays an important role in cellulose synthesis. Influences both the distribution and velocity of cellulose synthase complexes in the plasma membrane. Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant.	Ras-related small GTP-binding family protein;(source:Araport11)
AT2G44690.1	protein_coding	Arabidopsis RAC-like 9	A member of ROP GTPase gene family.	RAC-like 9;(source:Araport11)
AT2G44620.1	protein_coding	mitochondrial acyl carrier protein 1	Encodes a member of the mitochondrial acyl carrier protein (ACP) family.  As part of the mitochondrial matrix, it is likely to be involved in fatty acid or lipoic acid biogenesis. Its acylated form is predominantly present in the mitochondrial membrane while the non-acylated form is soluble. The mRNA is cell-to-cell mobile.	mitochondrial acyl carrier protein 1;(source:Araport11)
AT2G44700.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G44780.1	pseudogene		Encodes a Uclacyanin/Basic blue family protein [pseudogene]	pseudogene of uclacyanin 2;(source:Araport11)
AT2G44630.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G44800.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G44640.1	protein_coding			TRIGALACTOSYLDIACYLGLYCEROL-like protein;(source:Araport11)
AT2G44710.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G44590.1	protein_coding	DYNAMIN-like 1D		DYNAMIN-like 1D;(source:Araport11)
AT2G44650.1	protein_coding	chloroplast chaperonin 10	Encodes a chloroplast-localized chaperonin 10 whose mRNA is expressed in leaves and stems but not roots.	chloroplast chaperonin 10;(source:Araport11)
AT2G44600.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G44730.1	protein_coding	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein		Alcohol dehydrogenase transcription factor Myb/SANT-like family protein;(source:Araport11)
AT2G44660.1	protein_coding	ALG6, ALG8 glycosyltransferase family		ALG6, ALG8 glycosyltransferase family;(source:Araport11)
AT2G44670.1	protein_coding	Protein of unknown function (DUF581)		senescence-associated family protein (DUF581);(source:Araport11)
AT2G44740.1	protein_coding	cyclin p4;1		cyclin p4;(source:Araport11)
AT2G44790.1	protein_coding	uclacyanin 2	Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods.	uclacyanin 2;(source:Araport11)
AT2G44680.1	protein_coding	casein kinase II  beta subunit 4	Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.	casein kinase II beta subunit 4;(source:Araport11)
AT2G44750.1	protein_coding	thiamin pyrophosphokinase 2	Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.	thiamin pyrophosphokinase 2;(source:Araport11)
AT2G44760.1	protein_coding	Domain of unknown function (DUF3598)		dihydroorotate dehydrogenase (DUF3598);(source:Araport11)
AT2G44770.1	protein_coding	ELMO/CED-12 family protein		ELMO/CED-12 family protein;(source:Araport11)
AT2G44570.1	protein_coding	glycosyl hydrolase 9B12		glycosyl hydrolase 9B12;(source:Araport11)
AT2G44580.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT2G31220.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a bHLH transcription factor that together with bHLH089 and bHLH091 is important for the normal transcriptome of the developing Arabidopsis anther, possibly by forming a feed-forward loop with DYT1.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G31300.1	protein_coding	actin-related protein C1B	putative ARP2/3 protein complex subunit p41	actin-related protein C1B;(source:Araport11)
AT2G31230.1	protein_coding	ethylene-responsive element binding factor 15	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	ethylene-responsive element binding factor 15;(source:Araport11)
AT2G31310.1	protein_coding	LOB domain-containing protein 14		LOB domain-containing protein 14;(source:Araport11)
AT2G31240.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G31320.1	protein_coding	poly(ADP-ribose) polymerase 2	Encodes a poly(ADP-ribose) polymerase.	poly(ADP-ribose) polymerase 2;(source:Araport11)
AT2G31250.1	protein_coding	Glutamyl-tRNA reductase family protein		Glutamyl-tRNA reductase family protein;(source:Araport11)
AT2G31260.1	protein_coding	autophagy 9 (APG9)	Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components.  Mutant shows accelerated bolting and senescence.	autophagy 9 (APG9);(source:Araport11)
AT2G31190.1	protein_coding	Protein of unknown function, DUF647	Encodes RUS2 (root UVB sensitive2), a DUF647-containing protein that is homologous to the RUS1 protein. RUS2 works with RUS1 in a root UV-B sensing pathway that plays a vital role in Arabidopsis early seedling morphogenesis and development.  Required for auxin polar transport.	root UVB sensitive protein (Protein of unknown function, DUF647);(source:Araport11)
AT2G31270.1	protein_coding	homolog of yeast CDT1 A	Encodes a cyclin-dependent protein kinase. Involved in nuclear DNA replication and plastid division. Located in nucleus and chloroplast.	CDT1-like protein A;(source:Araport11)
AT2G31200.1	protein_coding	actin depolymerizing factor 6	Encodes actin depolymerizing factor 6 (ADF6). The mRNA is cell-to-cell mobile.	actin depolymerizing factor 6;(source:Araport11)
AT2G31280.1	protein_coding	conserved peptide upstream open reading frame 7	Encodes a LHW-like protein with 80% amino acid identity to LHW.	transcription factor bHLH155-like protein;(source:Araport11)
AT2G31210.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a bHLH transcription factor that together with bHLH089 and bHLH010 is important for the normal transcriptome of the developing Arabidopsis anther, possibly by forming a feed-forward loop with DYT1.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G31290.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT2G16420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.8e-39 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G16260.1	pseudogene		pseudogene of glycine-rich RNA-binding protein	pseudogene of cold;(source:Araport11)
AT2G16330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45080.1);(source:TAIR10)
AT2G16410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G15550.1);(source:TAIR10)
AT2G16250.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G16230.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT2G16400.1	protein_coding	BEL1-like homeodomain 7		BEL1-like homeodomain 7;(source:Araport11)
AT2G16320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to  MURA transposase of maize Mutator transposon;(source:TAIR10)
AT2G16390.1	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein	Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins.  Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation.  Cooperates with PolIVb to facilitate RNA-directed de novo methylation and silencing of homologous DNA.  Endogenous targets include intergenic regions near retrotransposon LTRs or short RNA encoding sequences that might epigenetically regulate adjacent genes.  May be used to establish a basal yet reversible level of silencing in euchromatin.	SNF2 domain-containing protein / helicase domain-containing protein;(source:Araport11)
AT2G16310.1	pseudogene			pseudogene of endoplasmatic reticulum retrieval protein 1B;(source:Araport11)
AT2G16380.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT2G16460.1	protein_coding	Protein of unknown function (DUF1640)		coiled-coil 90B-like protein (DUF1640);(source:Araport11)
AT2G16370.1	protein_coding	thymidylate synthase 1	Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene.  This is unique in Arabidopsis and protozoa.  Other organisms have independent genes for  this function. This alternative transcript is produced in tissues other than leaves.	thymidylate synthase 1;(source:Araport11)
AT2G16300.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G16450.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G16360.1	protein_coding	Ribosomal protein S25 family protein		40S ribosomal protein S25;(source:Araport11)
AT2G16290.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box SKIP23-like protein (DUF295);(source:Araport11)
AT2G16440.1	protein_coding	Minichromosome maintenance (MCM2/3/5) family protein	Regulates DNA replication via interaction with BICE1 and MCM7.	Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT2G16280.1	protein_coding	3-ketoacyl-CoA synthase 9	Encodes KCS9, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 9;(source:Araport11)
AT2G16430.1	protein_coding	purple acid phosphatase 10		purple acid phosphatase 10;(source:Araport11)
AT2G16340.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G16270.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G10930.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G10920.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G10910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.5e-24 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT2G10900.1	transposable_element_gene	transposable element gene	similarity to non-LTR retroelement protein	transposable_element_gene;(source:Araport11);expressed protein;(source:TAIR10)
AT2G10890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-185 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein, similar to hypothetical protein GB:AAC26673;(source:TAIR10)
AT2G10870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48250.1);(source:TAIR10)
AT2G05420.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G05410.1	protein_coding	TRAF-like family protein		MATH domain/coiled-coil protein;(source:Araport11)
AT2G05400.1	protein_coding	Ubiquitin-specific protease family C19-related protein		Ubiquitin-specific protease family C19-related protein;(source:Araport11)
AT2G05390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.2e-200 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G05380.1	protein_coding	glycine-rich protein 3 short isoform	glycine-rich protein 3 short isoform (GRP3S) mRNA, complete The mRNA is cell-to-cell mobile.	glycine-rich protein 3 short isoform;(source:Araport11)
AT2G05370.1	protein_coding			RNA-dependent RNA polymerase-like protein;(source:Araport11)
AT2G05360.1	protein_coding			F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G05350.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05430.1	protein_coding	Ubiquitin-specific protease family C19-related protein		Ubiquitin-specific protease family C19-related protein;(source:Araport11)
AT2G38250.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT2G38170.1	protein_coding	cation exchanger 1	Encodes a high affinity vacuolar calcium antiporter.  The residue His 338 is critical to Ca2+ transport activity. Disruption of CAX1 reduces manganese and zinc of shoot tissue and results in a decrease in the activity of vacuolar V-type proton ATPase.	cation exchanger 1;(source:Araport11)
AT2G38260.1	pseudogene		Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit;(source:Araport11)
AT2G38180.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT2G38130.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.	Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G38090.1	protein_coding	Duplicated homeodomain-like superfamily protein		Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT2G38140.1	protein_coding	plastid-specific ribosomal protein 4	plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete The mRNA is cell-to-cell mobile.	plastid-specific ribosomal protein 4;(source:Araport11)
AT2G38270.1	protein_coding	CAX-interacting protein 2	Encodes protein homologous to CXIP1.  CXIP1 is a PICOT domain containing protein interacts with CAX1, a high capacity calcium transporter.  However, CXP2 does not interact with CAX1 and only moderately activates another calcium transporter CAX4.	CAX-interacting protein 2;(source:Araport11)
AT2G38150.1	protein_coding	alpha 1,4-glycosyltransferase family protein		alpha 1,4-glycosyltransferase family protein;(source:Araport11)
AT2G38280.1	protein_coding	AMP deaminase, putative / myoadenylate deaminase, putative	Encodes a protein with in vitro AMP deaminase activity that is involved in embryogenesis. Homozygous mutant embryos fail to develop past the zygote stage.	AMP deaminase, putative / myoadenylate deaminase;(source:Araport11)
AT2G38210.1	protein_coding	putative PDX1-like protein 4		putative PDX1-like protein 4;(source:Araport11)
AT2G38160.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G38290.1	protein_coding	ammonium transporter 2	encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.	ammonium transporter 2;(source:Araport11)
AT2G38220.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G38230.1	protein_coding	pyridoxine biosynthesis 1.1	Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. The mRNA is cell-to-cell mobile.	pyridoxine biosynthesis 1.1;(source:Araport11)
AT2G38100.1	protein_coding	proton-dependent oligopeptide transport (POT) family protein	Encodes a nitrate transporter that is involved in nitrogen accumulation in embryos.	proton-dependent oligopeptide transport (POT) family protein;(source:Araport11)
AT2G38240.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	One of 4 paralogs encoding a 2-oxoglutarate/Fe(II)-dependent oxygenases  that hydroxylates JA to 12-OH-JA.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G38110.1	protein_coding	glycerol-3-phosphate acyltransferase 6	bifunctional sn-glycerol-3-phosphate 2-O-acyltransferase/phosphatase. Involved in cutin assembly.	glycerol-3-phosphate acyltransferase 6;(source:Araport11)
AT2G38120.1	protein_coding	Transmembrane amino acid transporter family protein	Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types.  AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.  Shoot supplied ammonium targets AUX1 and inhibits lateral root emergence. The mRNA is cell-to-cell mobile.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT2G29510.1	protein_coding	Protein of unknown function (DUF3527)		hypothetical protein (DUF3527);(source:Araport11)
AT2G29500.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT2G29340.1	protein_coding	NAD-dependent epimerase/dehydratase family protein		NAD-dependent epimerase/dehydratase family protein;(source:Araport11)
AT2G29490.1	protein_coding	glutathione S-transferase TAU 1	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 1;(source:Araport11)
AT2G29330.1	protein_coding	tropinone reductase		tropinone reductase;(source:Araport11)
AT2G29480.1	protein_coding	glutathione S-transferase tau 2	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase tau 2;(source:Araport11)
AT2G29590.1	protein_coding	Thioesterase superfamily protein		Thioesterase superfamily protein;(source:Araport11)
AT2G29470.1	protein_coding	glutathione S-transferase tau 3	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase tau 3;(source:Araport11)
AT2G29320.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G29460.1	protein_coding	glutathione S-transferase tau 4	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Role in the degradation of H2O2 to water using glutathione as electron donor	glutathione S-transferase tau 4;(source:Araport11)
AT2G29160.1	pseudogene			pseudogene of senescence-associated gene 13;(source:Araport11)
AT2G29310.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G29450.1	protein_coding	glutathione S-transferase tau  5	Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002)	glutathione S-transferase tau 5;(source:Araport11)
AT2G29150.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G29300.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G29140.1	protein_coding	pumilio 3	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. The mRNA is cell-to-cell mobile.	pumilio 3;(source:Araport11)
AT2G29290.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G29440.1	protein_coding	glutathione S-transferase tau 6	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase tau 6;(source:Araport11)
AT2G29570.1	protein_coding	proliferating cell nuclear antigen 2	Functionally interacts with POLH to repair DNA damaged by UVB damage. May be sumoylated.	proliferating cell nuclear antigen 2;(source:Araport11)
AT2G29560.1	protein_coding	cytosolic enolase	Encodes a putative phosphoenolpyruvate enolase that is localized both to the nucleus and the cytoplasm. The mRNA is cell-to-cell mobile.	cytosolic enolase;(source:Araport11)
AT2G29280.1	pseudogene			pseudogene of tropinone reductase;(source:Araport11)
AT2G29270.1	pseudogene			pseudogene of senescence-associated gene 13;(source:Araport11)
AT2G29550.1	protein_coding	tubulin beta-7 chain	Encodes a beta-tubulin that is expressed in leaves, roots and flowers.	tubulin beta-7 chain;(source:Araport11)
AT2G29260.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G29540.1	protein_coding	RNApolymerase 14 kDa subunit	RNA polymerase I(A) and III(C) 14 kDa subunit	RNApolymerase 14 kDa subunit;(source:Araport11)
AT2G29530.1	protein_coding	Tim10/DDP family zinc finger protein	Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. Together with AtTIM9, AtTIM10 is non-redundantly essential for maintaining mitochondrial function of early embryo proper cells and endosperm free-nuclei.	Tim10/DDP family zinc finger protein;(source:Araport11)
AT2G29430.1	protein_coding	Family of unknown function (DUF572) 		coiled-coil protein (DUF572);(source:Araport11)
AT2G29600.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G29420.1	protein_coding	glutathione S-transferase tau 7	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.	glutathione S-transferase tau 7;(source:Araport11)
AT2G29410.1	protein_coding	metal tolerance protein B1	member of Zinc transporter (ZAT) family	metal tolerance protein B1;(source:Araport11)
AT2G29400.1	protein_coding	type one protein phosphatase 1	Type 1 protein phosphatase, expressed in roots, rosettes and flowers	type one protein phosphatase 1;(source:Araport11)
AT2G29250.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT2G29390.1	protein_coding	sterol 4-alpha-methyl-oxidase 2-2	Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.	sterol 4-alpha-methyl-oxidase 2-2;(source:Araport11)
AT2G29240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1);(source:TAIR10)
AT2G29380.1	protein_coding	highly ABA-induced PP2C gene 3		highly ABA-induced PP2C protein 3;(source:Araport11)
AT2G29230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.0e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G29370.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G29580.1	protein_coding	CCCH-type zinc fingerfamily protein with RNA-binding domain	Encodes MAC5B, homologous to MAC5A. MAC5A is a component of the MOS4-associated complex (MAC) that contributes to snc1- mediated autoimmunity. Homologues include AT1G07360 (MAC5A), AT2G29580 (MAC5B) and AT5G07060 (MAC5C).	CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT2G29220.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT2G29360.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G29210.1	protein_coding	splicing factor PWI domain-containing protein		splicing factor PWI domain-containing protein;(source:Araport11)
AT2G29350.1	protein_coding	senescence-associated gene 13	senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase	senescence-associated gene 13;(source:Araport11)
AT2G29200.1	protein_coding	pumilio 1	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 1;(source:Araport11)
AT2G29190.1	protein_coding	pumilio 2	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 2;(source:Araport11)
AT2G29180.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G29170.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G39670.1	protein_coding	Radical SAM superfamily protein		Radical SAM superfamily protein;(source:Araport11)
AT2G39690.1	protein_coding	Protein of unknown function, DUF547		ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT2G39700.1	protein_coding	expansin A4	putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A4;(source:Araport11)
AT2G47620.1	protein_coding	SWITCH/sucrose nonfermenting 3A	Homologous to yeast SWI3 and a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3C, the other two members of the SWI3 family.	SWITCH/sucrose nonfermenting 3A;(source:Araport11)
AT2G47800.1	protein_coding	multidrug resistance-associated protein 4	Encodes a plasma membrane localized ATPase transporter involved in multidrug transport.  The expression of this gene is upregulated by herbicide safeners such as benoxacor, fluxofenim and fenclorim. The mRNA is cell-to-cell mobile.	multidrug resistance-associated protein 4;(source:Araport11)
AT2G47710.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT2G47720.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G47810.1	protein_coding	nuclear factor Y, subunit B5		nuclear factor Y, subunit B5;(source:Araport11)
AT2G47730.1	protein_coding	glutathione S-transferase phi 8	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase phi 8;(source:Araport11)
AT2G47750.1	protein_coding	putative indole-3-acetic acid-amido synthetase GH3.9	Encodes GH3.9, a member of the GH3 family auxin-responsive genes. gh3.9-1 mutants had greater primary root length, increased sensitivity to indole-3-acetic acid (IAA)-mediated root growth inhibition, but no obvious effects on apical dominance or leaf morphology.	putative indole-3-acetic acid-amido synthetase GH3.9;(source:Araport11)
AT2G47820.1	protein_coding			arginine-glutamic acid dipeptide repeat protein;(source:Araport11)
AT2G47830.1	protein_coding	Cation efflux family protein		Cation efflux family protein;(source:Araport11)
AT2G47760.1	protein_coding	asparagine-linked glycosylation 3	Encodes an &#945;-1,3-mannosyltransferase. Plants with mutations in the ALG3 protein have abnormal gylcoslation profiles. They also exhibit abnormal responses to MAMPs possibly because the glycan properties of FL22 are affected.	asparagine-linked glycosylation 3;(source:Araport11)
AT2G47650.1	protein_coding	UDP-xylose synthase 4	encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.	UDP-xylose synthase 4;(source:Araport11)
AT2G47840.1	protein_coding	Uncharacterised conserved protein ycf60	Encodes a component of the TIC (translocon at the inner envelope membrane of chloroplasts) protein translocation machinery mediating the protein translocation across the inner envelope of plastids. The Arabidopsis genome encodes four Tic20 homologous proteins, AT1G04940(Tic20-I), AT2G47840(Tic20-II), AT4G03320(Tic20-IV) and AT5G55710(Tic20-V).	Uncharacterized conserved protein ycf60;(source:Araport11)
AT2G47770.1	protein_coding	TSPO(outer membrane tryptophan-rich sensory protein)-related	Encodes a membrane-bound protein designated AtTSPO (Arabidopsis thaliana TSPO-related). AtTSPO is related to the bacterial outer membrane tryptophan-rich sensory protein (TspO) and the mammalian mitochondrial 18 kDa Translocator Protein (18 kDa TSPO), members of the TspO/MBR domain-containing membrane proteins. Mainly detected in dry seeds, but can be induced in vegetative tissues by osmotic or salt stress or abscisic acid treatment. Located in endoplasmic reticulum and the Golgi stacks.  It is degraded through the autophagy pathway.	TSPO(outer membrane tryptophan-rich sensory protein)-like protein;(source:Araport11)
AT2G47850.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT2G47780.1	protein_coding	Rubber elongation factor protein (REF)	Encodes a small rubber particle protein homolog.  Plays dual roles as positive factors for tissue growth and development and in drought stress responses.	Rubber elongation factor protein (REF);(source:Araport11)
AT2G47790.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes GIGANTUS1 (GTS1), a member of Transducin/WD40 protein superfamily. Controls seed germination, growth and biomass accumulation.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G47680.1	protein_coding	zinc finger (CCCH type) helicase family protein		zinc finger (CCCH type) helicase family protein;(source:Araport11)
AT2G47690.1	protein_coding	NADH-ubiquinone oxidoreductase-related		NADH-ubiquinone oxidoreductase-like protein;(source:Araport11)
AT2G47700.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G25890.1	protein_coding	Oleosin family protein		Oleosin family protein;(source:Araport11)
AT2G25760.1	protein_coding	Protein kinase family protein	Casein kinase involved in phosphorylation and ubiquination of RYR/PYLs, resulting in negative regulation of ABA response.	Protein kinase family protein;(source:Araport11)
AT2G25830.1	protein_coding	YebC-related		YebC-like protein;(source:Araport11)
AT2G25880.1	protein_coding	ataurora2	Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division.  Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems.  In interphase cells, the protein is predominantly nuclear.  During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle.	ataurora2;(source:Araport11)
AT2G25820.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G25810.1	protein_coding	tonoplast intrinsic protein 4;1		tonoplast intrinsic protein 4;(source:Araport11)
AT2G25800.1	protein_coding	Protein of unknown function (DUF810)		elongation factor Ts (DUF810);(source:Araport11)
AT2G25920.1	protein_coding			pollen-specific LRR extensin-like protein;(source:Araport11)
AT2G25870.1	protein_coding	haloacid dehalogenase-like hydrolase family protein	Encodes an endoribonuclease that is required for chloroplast rRNA processing.	haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT2G25790.1	protein_coding	Leucine-rich receptor-like protein kinase family protein		Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT2G25780.1	protein_coding	Protein of unknown function (DUF1677)		hypothetical protein (DUF1677);(source:Araport11)
AT2G25910.1	protein_coding	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein		3-5 exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein;(source:Araport11)
AT2G25850.1	protein_coding	poly(A) polymerase 2	Encodes a poly(A) polymerase. Located in the nucleus.	poly(A) polymerase 2;(source:Araport11)
AT2G25900.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein	Encodes a protein with two tandem-arrayed CCCH-type zinc fingers that binds RNA and is involved in RNA turnover. The mRNA is cell-to-cell mobile.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT2G25840.1	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT2G25770.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT2G45650.1	protein_coding	AGAMOUS-like 6	Sequence suggests this encodes a MADS-box transcription factor. Negatively regulates the FLC/MAF clade genes and positively regulates FT in Arabidopsis.	AGAMOUS-like 6;(source:Araport11)
AT2G45570.1	protein_coding	cytochrome P450, family 76, subfamily C, polypeptide 2	member of CYP76C	cytochrome P450, family 76, subfamily C, polypeptide 2;(source:Araport11)
AT2G45660.1	protein_coding	AGAMOUS-like 20	Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA.	AGAMOUS-like 20;(source:Araport11)
AT2G45580.1	protein_coding	cytochrome P450, family 76, subfamily C, polypeptide 3		cytochrome P450, family 76, subfamily C, polypeptide 3;(source:Araport11)
AT2G45500.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT2G45490.1	protein_coding	ataurora3	Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division.  Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems.  In interphase cells, the protein is predominantly nuclear.  During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells.	ataurora3;(source:Araport11)
AT2G45590.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G45510.1	protein_coding	cytochrome P450, family 704, subfamily A, polypeptide 2	member of CYP704A	cytochrome P450, family 704, subfamily A, polypeptide 2;(source:Araport11)
AT2G45670.1	protein_coding	calcineurin B subunit-related	Encodes an acyl-CoA: lysophosphatidylethanolamine acyltransferase with 20:0-CoA being the best acyl donor. Mutations adversely affect the growth of plants and result in decreased lipid content in roots and seeds.	calcineurin B subunit-like protein;(source:Araport11)
AT2G45600.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G45520.1	protein_coding			coiled-coil protein;(source:Araport11)
AT2G45610.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G45680.1	protein_coding	TCP family transcription factor 		TCP family transcription factor;(source:Araport11)
AT2G45530.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G45620.1	protein_coding	Nucleotidyltransferase family protein	Nucleotidyltransferase family protein involved in transcript polyadenylation.	Nucleotidyltransferase family protein;(source:Araport11)
AT2G45690.1	protein_coding	shrunken seed protein (SSE1)	Encodes a protein with similarity to yeast Pep16p, a membrane localized protein involved in peroxisome assembly and protein-trafficking. SSE1 mutant seeds do not accumulate  oils and  dessicated seeds have a shrunken appearance. Involved in protein and oil body biogenesis. SSE is expressed during seed development, reaching the highest peak in mature siliques. Expression in leaves and roots  is low compared to cotyledons and flowers. Located in peroxisomes and endoplasmic reticulum. Homologous to the peroxin PEX16 and complements the pex16 mutants of  the yeast Yarrowia lipolytica.	shrunken seed protein (SSE1);(source:Araport11)
AT2G45540.1	protein_coding	WD-40 repeat family protein / beige-related		WD-40 repeat family protein / beige-like protein;(source:Araport11)
AT2G45630.1	protein_coding	D-isomer specific 2-hydroxyacid dehydrogenase family protein	Hydroxyphenylpyruvate reductase (HPPR) family member with low activity.	D-isomer specific 2-hydroxyacid dehydrogenase family protein;(source:Araport11)
AT2G45550.1	protein_coding	cytochrome P450, family 76, subfamily C, polypeptide 4	member of CYP76C	cytochrome P450, family 76, subfamily C, polypeptide 4;(source:Araport11)
AT2G45560.1	protein_coding	cytochrome P450, family 76, subfamily C, polypeptide 1	cytochrome P450 monooxygenase	cytochrome P450, family 76, subfamily C, polypeptide 1;(source:Araport11)
AT2G45640.1	protein_coding	SIN3 associated polypeptide P18	Involved in the regulation of salt  stress. Expression of  AtSAP18 is induced by NaCl, cold, drought,  ABA, and ethylene treatment. AtSAP18 and HDA19 associate with  ERF3 and ERF4 both in vitro and in vivo.	SIN3 associated polypeptide P18;(source:Araport11)
AT2G45730.1	protein_coding	eukaryotic initiation factor 3 gamma subunit family protein		eukaryotic initiation factor 3 gamma subunit family protein;(source:Araport11)
AT2G13870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.4e-103 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G13900.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G13930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.8e-77 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G13890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, zinc knuckle (CCHC type) protein family, contains Pfam domain, PF00098: Zinc knuckle;(source:TAIR10)
AT2G13850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.1e-219 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT2G26690.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G26750.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G26700.1	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein	Member of AGC VIIIa Kinase gene family. Encodes PID2, a homolog of PID. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT2G26760.1	protein_coding	Cyclin B1;4		Cyclin B1;(source:Araport11)
AT2G26710.1	protein_coding	Cytochrome P450 superfamily protein	Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion.	Cytochrome P450 superfamily protein;(source:Araport11)
AT2G26770.1	protein_coding	plectin-related	Encodes a plant-specific actin binding protein SCAB1 (STOMATAL CLOSURE-RELATED ACTIN BINDING PROTEIN1).  SCAB1 stabilizes actin filaments and regulates stomatal movement.	plectin-like protein;(source:Araport11)
AT2G26720.1	protein_coding	Cupredoxin superfamily protein		Cupredoxin superfamily protein;(source:Araport11)
AT2G26650.1	protein_coding	K+ transporter 1	Encodes AKT1, a member of the Shaker family inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).	K+ transporter 1;(source:Araport11)
AT2G26660.1	protein_coding	SPX domain gene 2		SPX domain-containing protein 2 (SPX2);(source:Araport11)
AT2G26640.1	protein_coding	3-ketoacyl-CoA synthase 11	Encodes KCS11, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 11;(source:Araport11)
AT2G26670.1	protein_coding	Plant haem oxygenase (decyclizing) family protein	Encodes a plastid heme oxygenase necessary for phytochrome chromophore biosynthesis and for coupling the expression of some nuclear genes to the functional state of the chloroplast.	Plant heme oxygenase (decyclizing) family protein;(source:Araport11)
AT2G26730.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G26680.1	protein_coding			FkbM family methyltransferase;(source:Araport11)
AT2G26740.1	protein_coding	soluble epoxide hydrolase	Encodes a soluble epoxide hydrolase whose expression is induced by auxin and water stress.	soluble epoxide hydrolase;(source:Araport11)
AT2G43880.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G43710.1	protein_coding	Plant stearoyl-acyl-carrier-protein desaturase family protein	Encodes a stearoyl-ACP desaturase, involved in fatty acid desaturation. The ssi2 mutants have increased 18:0 and reduced 18:1 fatty acids. Exogenous application of glycerol to wild type plants mimics the ssi2 mutant phenotype. The altered 18:1 fatty acid content in the ssi2 mutants has an impact on SA- and JA-mediated defense signaling. ssi2 mutants resulted in hyper-resistance to green peach aphid and antibiosis activity in petiole exudates.	Plant stearoyl-acyl-carrier-protein desaturase family protein;(source:Araport11)
AT2G43790.1	protein_coding	MAP kinase 6	Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.MPK6 appears to be associated with the microsomal compartment and may be involved in mediating secretory processes. The mRNA is cell-to-cell mobile.	MAP kinase 6;(source:Araport11)
AT2G43700.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT2G43780.1	protein_coding			cytochrome oxidase assembly protein;(source:Araport11)
AT2G43620.1	protein_coding	Chitinase family protein		Chitinase family protein;(source:Araport11)
AT2G43870.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G43770.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G43610.1	protein_coding	Chitinase family protein		Chitinase family protein;(source:Araport11)
AT2G43690.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT2G43760.1	protein_coding	molybdopterin biosynthesis MoaE family protein		molybdopterin biosynthesis MoaE family protein;(source:Araport11)
AT2G43820.1	protein_coding	UDP-glucosyltransferase 74F2	Encodes a nicotinate-O-glycosyltransferase. Induced by Salicylic acid, virus, fungus and bacteria. Also involved in the tryptophan synthesis pathway. Independent of NPR1 for their induction by salicylic acid. UGT74F1 transfers UDP:glucose to salicylic acid (forming a glucoside (SAG) and a glucose ester (SGE)), benzoic acid, and anthranilate in vitro. UGT74F2 shows a weak ability to catalyze the formation of the p-aminobenzoate-glucose ester in vitro. But, UGT75B1 appears to be the dominant pABA acylglucosyltransferase in vivo based on assays in leaves, flowers, and siliques.	UDP-glucosyltransferase 74F2;(source:Araport11)
AT2G43680.1	protein_coding	IQ-domain 14	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 14;(source:Araport11)
AT2G43750.1	protein_coding	O-acetylserine (thiol) lyase B	Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasB, the key enzyme for fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Required for pollen tube growth and/or fertilization.	O-acetylserine (thiol) lyase B;(source:Araport11)
AT2G43810.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT2G43860.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G43670.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT2G43740.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT2G43800.1	protein_coding	Actin-binding FH2 (formin homology 2) family protein	Localizes to plasmodesmata (PD) through its transmembrane domain and is required for normal intercellular trafficking. Functions in a partially redundant manner with its closest homolog AtFH1. Regulates PD's permeability by anchoring actin filaments to PD. Caps the barbed end of actin filaments and stabilizes them in vitro.	Actin-binding FH2 (formin homology 2) family protein;(source:Araport11)
AT2G43660.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT2G43730.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT2G43650.1	protein_coding	Sas10/U3 ribonucleoprotein (Utp) family protein	SAS10/C1D family protein. Loss of function mutants are embryo lethal.Ubiquitously expressed, with preference for tissues undergoing rapid cellular growth and differentiation.	Sas10/U3 ribonucleoprotein (Utp) family protein;(source:Araport11)
AT2G43720.1	protein_coding	Eukaryotic protein of unknown function (DUF842)		FAM136A-like protein (DUF842);(source:Araport11)
AT2G43640.1	protein_coding	Signal recognition particle, SRP9/SRP14 subunit		Signal recognition particle, SRP9/SRP14 subunit;(source:Araport11)
AT2G43850.1	protein_coding	Integrin-linked protein kinase family		Integrin-linked protein kinase family;(source:Araport11)
AT2G43630.1	protein_coding			nucleusenvelope protein;(source:Araport11)
AT2G43840.1	protein_coding	UDP-glycosyltransferase 74 F1	UGT74F1 transfers UDP:glucose to salicylic acid (forming a glucoside), benzoic acid, quercetin, and athranilate in vitro. UGT74F1 shows a weak ability to catalyze the formation of the p-aminobenzoate-glucose ester in vitro. But, UGT75B1 appears to be the dominant pABA acylglucosyltransferase in vivo based on assays in leaves, flowers, and siliques. The true biological substrate(s) of UGT74F1 are not known, but mutant plants lacking UGT74F1 have a decreased level of salicylate glucoside.	UDP-glycosyltransferase 74 F1;(source:Araport11)
AT2G43830.1	pseudogene			pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT2G06310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.2e-219 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G06400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-27 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G06290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-30 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT2G06330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.0e-85 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G06350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.9e-229 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G06240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.7e-37 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G06370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, related to En/Spm transposon family of maize;(source:TAIR10)
AT2G06250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to  MURA transposase of maize Mutator transposon;(source:TAIR10)
AT2G06260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.0e-28 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G06270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to  MURA transposase of maize Mutator transposon;(source:TAIR10)
AT2G06280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G03560.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box only protein (DUF295);(source:Araport11)
AT2G03740.1	protein_coding	late embryogenesis abundant domain-containing protein / LEA domain-containing protein		late embryogenesis abundant domain-containing protein / LEA domain-containing protein;(source:Araport11)
AT2G03650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.7e-16 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G03570.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G03670.1	protein_coding	cell division cycle 48B	CDC48 - like protein  AAA-type ATPaseCell. division control protein 48 homolog B	cell division cycle 48B;(source:Araport11)
AT2G03590.1	protein_coding	ureide permease 1	Encodes a member of a class of allantoin transporters.	ureide permease 1;(source:Araport11)
AT2G03750.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G03680.1	protein_coding	spiral1	The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.	spiral1;(source:Araport11)
AT2G03600.1	protein_coding	ureide permease 3	Encodes UPS3 (ureide permease 3), similar to UPS1, an allantoin transporter.	ureide permease 3;(source:Araport11)
AT2G03760.1	protein_coding	sulphotransferase 12	Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It also shows sulfating activity toward flavonoids. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.	sulfotransferase 12;(source:Araport11)
AT2G03610.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G03690.1	protein_coding	coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein	Ubiquinone biosynthesis protein COQ4 homolog.	coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein;(source:Araport11)
AT2G03770.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a sulfotransferase with sulfating activity toward flavonoids, specifically kaempferol.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G03620.1	protein_coding	magnesium transporter 3	Transmembrane magnesium transporter. One of nine family members.	magnesium transporter 3;(source:Araport11)
AT2G03710.1	protein_coding	K-box region and MADS-box transcription factor family protein 	This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT2G03780.1	protein_coding	Translin family protein		Translin family protein;(source:Araport11)
AT2G03630.1	protein_coding			suppressor SRP40-like protein;(source:Araport11)
AT2G03720.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	Involved in root hair development	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT2G03800.1	protein_coding	D-aminoacyl-tRNA deacylases	encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.	D-aminoacyl-tRNA deacylase;(source:Araport11)
AT2G03640.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT2G03730.1	protein_coding	ACT domain repeat 5	Member of a small family of ACT domain containing proteins. ACT domains are thought to be involved in amino acid binding.	ACT domain repeat 5;(source:Araport11)
AT2G03820.1	protein_coding	nonsense-mediated mRNA decay NMD3 family protein	Encodes a protein involved in the nuclear export of the 60S ribosomal subunit and formation of the secondary cell wall.	nonsense-mediated mRNA decay NMD3 family protein;(source:Araport11)
AT2G03580.1	protein_coding	F-box family protein-related		F-box family protein-like protein;(source:Araport11)
AT2G46730.1	pseudogene			pseudogene of galacturonosyltransferase-like protein;(source:Araport11)
AT2G46740.1	protein_coding	D-arabinono-1,4-lactone oxidase family protein	Encodes a homolog of rat L-gulono-1,4-lactone (L-GulL) oxidase that is involved in the biosynthesis of L-ascorbic acid.	D-arabinono-1,4-lactone oxidase family protein;(source:Araport11)
AT2G46820.1	protein_coding	photosystem I P subunit	Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits.	photosystem I P subunit;(source:Araport11)
AT2G46750.1	protein_coding	D-arabinono-1,4-lactone oxidase family protein	Encodes a homolog of rat L-gulono-1,4-lactone (L-GulL) oxidase that is involved in the biosynthesis of L-ascorbic acid.	D-arabinono-1,4-lactone oxidase family protein;(source:Araport11)
AT2G46830.1	protein_coding	circadian clock associated 1	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. CCA1 binds the GI promoter.	circadian clock associated 1;(source:Araport11)
AT2G46760.1	protein_coding	D-arabinono-1,4-lactone oxidase family protein		D-arabinono-1,4-lactone oxidase family protein;(source:Araport11)
AT2G46840.1	protein_coding	DOMAIN OF UNKNOWN FUNCTION 724 4	Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype. Overexpression increases plant organ size, possibly by influencing the expression of the cell wall formation and auxin transporter genes that regulate cell size.	hypothetical protein (DOMAIN OF UNKNOWN FUNCTION 724 4);(source:Araport11)
AT2G46770.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	NAC transcription factor NST1. NST1 and NST2 are redundant in regulating secondary wall thickening  in anther walls and siliques. An NST1 promoter  fusion was detected in various tissues in which lignified secondary walls develop. Both MYC2 and MYC4 bind to the NST1 promoter and appear to regulate its expression in response to blue light.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT2G46850.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G46780.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G46790.1	protein_coding	pseudo-response regulator 9	Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY.	pseudo-response regulator 9;(source:Araport11)
AT2G46800.1	protein_coding	zinc transporter of Arabidopsis thaliana	Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis.	zinc transporter;(source:Araport11)
AT2G46810.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	MYC-type transcription factor which interacts with ICE1 and negatively regulates cold-responsive genes and cold tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G18880.1	protein_coding	vernalization5/VIN3-like		vernalization5/VIN3-like protein;(source:Araport11)
AT2G18890.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G18940.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G18950.1	protein_coding	homogentisate phytyltransferase 1	Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading.	homogentisate phytyltransferase 1;(source:Araport11)
AT2G18960.1	protein_coding	H(+)-ATPase 1	Encodes a plasma membrane proton ATPase.  Mutants have a reduced ability to close their stomata in response to drought and are affected in stomatal but not seed responsiveness to ABA. The mRNA is cell-to-cell mobile.	H[+]-ATPase 1;(source:Araport11)
AT2G18970.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G18810.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein (DUF313);(source:Araport11)
AT2G18900.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G18980.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G18910.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G18990.1	protein_coding	thioredoxin domain-containing protein 9 homolog		thioredoxin-like/ATP-binding protein;(source:Araport11)
AT2G18870.1	protein_coding	vernalization5/VIN3-like		vernalization5/VIN3-like protein;(source:Araport11)
AT2G18920.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G16000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.6e-248 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G15820.1	protein_coding	endonucleases	Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage.	endonuclease;(source:Araport11)
AT2G15900.1	protein_coding	Phox-associated domain;Phox-like;Sorting nexin, C-terminal	Encodes a member of the Arabidopsis sorting nexin family.	phox domain-containing protein;(source:Araport11)
AT2G15810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.5e-12 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G15890.1	protein_coding	maternal effect embryo arrest 14	Encodes CBP1, a regulator of transcription initiation in central cell-mediated pollen tube guidance.	maternal effect embryo arrest 14;(source:Araport11)
AT2G15940.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-114 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G15980.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G15880.1	protein_coding	Leucine-rich repeat (LRR) family protein	Pollen expressed protein required for pollen tube growth.Along with other members of the LRX family, itnteracts with RALF4 to control pollen tube growth and integrity. Loss of function results in premature pollen tube rupture and reduced fertility.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT2G15800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT2G15870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G15920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G15790.1	protein_coding	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is  specifically required for the vegetative but not the reproductive  maturation of the shoot.  Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase;(source:Araport11)
AT2G15860.1	protein_coding			BAT2 domain protein;(source:Araport11)
AT2G15910.1	protein_coding	CSL zinc finger domain-containing protein		CSL zinc finger domain-containing protein;(source:Araport11)
AT2G15780.1	protein_coding	Cupredoxin superfamily protein		Cupredoxin superfamily protein;(source:Araport11)
AT2G15850.1	pseudogene			pseudogene of non-LTR retroelement reverse transcriptase;(source:Araport11)
AT2G15770.1	protein_coding	Cupredoxin superfamily protein		Cupredoxin superfamily protein;(source:Araport11)
AT2G15840.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT2G15830.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G15970.1	protein_coding	cold regulated 413 plasma membrane 1	encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. The mRNA is cell-to-cell mobile.	cold regulated 413 plasma membrane 1;(source:Araport11)
AT2G15960.1	protein_coding		Unknown protein. Expression decreased in response to proline.	stress-induced protein;(source:Araport11)
AT2G34780.1	protein_coding	maternal effect embryo arrest 22	Encodes a novel protein of unknown function that is essential for embryonic development. Severe loss of function alleles are embryo lethal. Analysis  of a partial loss of function allele indicates a role for EMB1611 in regulation of endoreduplication and maintenance of meristem cell fate. It appears to be required for maintaining the CLV-WUS regulatory pathway.	maternal effect embryo arrest 22;(source:Araport11)
AT2G34960.1	protein_coding	cationic amino acid transporter 5	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane.	cationic amino acid transporter 5;(source:Araport11)
AT2G34870.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G34790.1	protein_coding	FAD-binding Berberine family protein	Encodes a BBE-like enzyme that acts in monolignol metabolism by catalyzing the oxidation of aromatic allylic alcohols, such as coumaryl-, sinapyl-, and coniferyl alcohol, to the corresponding aldehydes.	FAD-binding Berberine family protein;(source:Araport11)
AT2G34880.1	protein_coding	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein	JMJ15 is a novel H3K4 demethylase that regulates genes involved in flowering and response to stress. It is also a maternally expressed, imprinted gene.	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11)
AT2G35050.1	protein_coding	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain		kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT2G34890.1	protein_coding	CTP synthase family protein	Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT2G34970.1	protein_coding	Trimeric LpxA-like enzyme		Trimeric LpxA-like enzyme;(source:Araport11)
AT2G35060.1	protein_coding	K+ uptake permease 11	potassium transporter	K+ uptake permease 11;(source:Araport11)
AT2G34900.1	protein_coding	Transcription factor GTE6	Encodes a member of the BET subgroup of bromodomain proteins, a novel class of putative transcription factors.  Its expression is induced during seed imbibition and downregulated during germination. Seeds of a loss-of-function mutant allele, imb1, show impaired cotyledon greening during germination in abscisic acid (ABA) and express higher levels of ABI5 protein than the wild type. Moreover, imb1 seeds are deficient in the phytochrome A (phyA)-mediated very-low-fluence response of germination.	Transcription factor GTE6;(source:Araport11)
AT2G34980.1	protein_coding	phosphatidylinositolglycan synthase family protein	Encodes a putative phosphatidylinositol-glycan synthase subunit C gene. It is involved in the first step of the glycosylphosphatidylinositol (GPI) biosynthetic pathway.	phosphatidylinositolglycan synthase family protein;(source:Araport11)
AT2G34910.1	protein_coding			root hair specific protein;(source:Araport11)
AT2G34990.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G34810.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT2G34920.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G35000.1	protein_coding	RING/U-box superfamily protein	ATL9 is an E3 ligase-like protein that is induced by chitin oligomers and contributes to fungal resistance.It differs from other members of the ATL family in that it has a PEST domain. It is a short lived protein that is subject to proteosome mediated degradation. It is expressed in many aerial tissues in a pattern that varies with developmental stage.	RING/U-box superfamily protein;(source:Araport11)
AT2G34820.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G34930.1	protein_coding	disease resistance family protein / LRR family protein		disease resistance family protein / LRR family protein;(source:Araport11)
AT2G35010.1	protein_coding	thioredoxin O1		thioredoxin O1;(source:Araport11)
AT2G34830.1	protein_coding	WRKY DNA-binding protein 35	member of WRKY Transcription Factor; Group II-e	WRKY DNA-binding protein 35;(source:Araport11)
AT2G34940.1	protein_coding	VACUOLAR SORTING RECEPTOR 5		VACUOLAR SORTING RECEPTOR 5;(source:Araport11)
AT2G35020.1	protein_coding	N-acetylglucosamine-1-phosphate uridylyltransferase 2	Encodes a protein that functions as an N-acetylglucosamine-1-phosphate uridylyltransferase that catalyzes the formation of UDP-N-acetylglucosamine (UDP-GlcNAc). This is an essential precursor for glycolipid and glycoprotein synthesis and is also used for regulatory protein modification in signaling pathways. The enzyme can also catalyze the reverse reaction using both UDP-GlcNAc and the less common UDP-N-acetylgalactosamine as substrates. This enzyme can also act on glucose-1-phosphate to produce UDP-glucose. The mRNA is cell-to-cell mobile.	N-acetylglucosamine-1-phosphate uridylyltransferase 2;(source:Araport11)
AT2G34840.1	protein_coding	Coatomer epsilon subunit		Coatomer epsilon subunit;(source:Araport11)
AT2G35030.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G34850.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G35040.1	protein_coding	AICARFT/IMPCHase bienzyme family protein		AICARFT/IMPCHase bienzyme family protein;(source:Araport11)
AT2G34860.1	protein_coding	DnaJ/Hsp40 cysteine-rich domain superfamily protein		DnaJ/Hsp40 cysteine-rich domain superfamily protein;(source:Araport11)
AT2G36440.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G36590.1	protein_coding	proline transporter 3	Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.	proline transporter 3;(source:Araport11)
AT2G36500.1	protein_coding	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein		CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein;(source:Araport11)
AT2G36450.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic overexpression of HRD increases the density of the root network and improves water and salt stress tolerance in Arabidopsis. Overexpression of HRD in rice causes an increase in plant biomass and drought resistance.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G36530.1	protein_coding	Enolase	Involved in light-dependent cold tolerance and encodes an enolase. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	Enolase;(source:Araport11)
AT2G36460.1	protein_coding	Aldolase superfamily protein		Aldolase superfamily protein;(source:Araport11)
AT2G36540.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G36550.1	protein_coding			haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT2G36400.1	protein_coding	growth-regulating factor 3	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower.	growth-regulating factor 3;(source:Araport11)
AT2G36560.1	protein_coding	AT hook motif DNA-binding family protein	A paternally expressed imprinted gene.	AT hook motif DNA-binding family protein;(source:Araport11)
AT2G36410.1	protein_coding	Family of unknown function (DUF662) 		transcriptional activator (DUF662);(source:Araport11)
AT2G36420.1	protein_coding			nucleolin-like protein;(source:Araport11)
AT2G36470.1	protein_coding	Plant protein of unknown function (DUF868)		DUF868 family protein, putative (DUF868);(source:Araport11)
AT2G36390.1	protein_coding	starch branching enzyme 2.1	Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues. The mRNA is cell-to-cell mobile.	starch branching enzyme 2.1;(source:Araport11)
AT2G36480.1	protein_coding	ENTH/VHS family protein		pre-mRNA cleavage complex 2 Pcf11-like protein;(source:Araport11)
AT2G36570.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G36430.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT2G36490.1	protein_coding	demeter-like 1	A repressor of transcriptional gene silencing. Functions by demethylating the target promoter DNA. Interacts physically with RPA2/ROR1. In the ros1 mutants, an increase in methylation is observed in a number of gene promoters. Among the loci affected by ros1, a few (RD29A and At1g76930) are affected in cytosine methylation in all sequence contexts (CpG, CpNpG or CpNpN), although many others are affected primarily in non-CpG contexts. The ros1 mutant is more susceptible to biotrophic pathogens and is repressed in its responsiveness of salyclic acid-dependent defence genes.	demeter-like 1;(source:Araport11)
AT2G36580.1	protein_coding	Pyruvate kinase family protein		Pyruvate kinase family protein;(source:Araport11)
AT2G05050.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT2G04970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1);(source:TAIR10)
AT2G05060.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G04980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, similar to At1g32840, At4g04010, At2g06430, At2g15140, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At2g02210, At3g32900;(source:TAIR10)
AT2G04940.1	protein_coding	scramblase-related		scramblase-like protein;(source:Araport11)
AT2G04990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287;(source:TAIR10)
AT2G04950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.0e-82 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G05070.1	protein_coding	photosystem II light harvesting complex gene 2.2	Encodes Lhcb2.2.  Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.	photosystem II light harvesting complex protein 2.2;(source:Araport11)
AT2G05000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47320.1);(source:TAIR10)
AT2G05080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1);(source:TAIR10)
AT2G05010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.6e-93 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G05020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative transposable element, blastp match of 61%25 identity and 9.4e-140 P-value to GP|13122426|dbj|BAB32907.1||AP003047 putative transposable element {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G05030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);contains domain GAG/POL/ENV POLYPROTEIN (PTHR10178);(source:TAIR10)
AT2G05040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.6e-200 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G04930.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G16600.1	protein_coding	rotamase CYP 3	Encodes cytosolic cyclophilin ROC3. The mRNA is cell-to-cell mobile.	rotamase CYP 3;(source:Araport11)
AT2G16570.1	protein_coding	GLN phosphoribosyl pyrophosphate amidotransferase 1	Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis	GLN phosphoribosyl pyrophosphate amidotransferase 1;(source:Araport11)
AT2G16580.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT2G16520.1	protein_coding			RING/U-box protein with C6HC-type zinc finger protein;(source:Araport11)
AT2G16560.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.7e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G16510.1	protein_coding	ATPase, F0/V0 complex, subunit C protein		ATPase, F0/V0 complex, subunit C protein;(source:Araport11)
AT2G16550.1	pseudogene			pseudogene of GLN phosphoribosyl pyrophosphate amidotransferase 1;(source:Araport11)
AT2G16500.1	protein_coding	arginine decarboxylase 1	Encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Promoter region of ADC1 contains 742-bp AT-rich transposable element, called AtATE, that belongs to the MITE families of repetitive elements.	arginine decarboxylase 1;(source:Araport11)
AT2G16540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to oj991113_30.20,  blastp match of 37%25 identity and 2.3e-07 P-value to GP|21741715|emb|CAD41338.1||AL662946 oj991113_30.20 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G16490.1	protein_coding	XH domain-containing protein		XH domain-containing protein;(source:Araport11)
AT2G16530.1	protein_coding	3-oxo-5-alpha-steroid 4-dehydrogenase family protein	Encodes  polyprenol reductase involved in N-gylcosylation. Mutants are defective in pollen development. Knockouts are embryo lethal	3-oxo-5-alpha-steroid 4-dehydrogenase family protein;(source:Araport11)
AT2G27150.1	protein_coding	abscisic aldehyde oxidase 3	Encodes the aldehyde oxidase delta isoform  catalyzing the final step in abscisic acid  biosynthesis.	abscisic aldehyde oxidase 3;(source:Araport11)
AT2G27160.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G31780.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G31860.1	pseudogene			pseudogene of poly(ADP-ribose) glycohydrolase 2;(source:Araport11)
AT2G31770.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G31850.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G31900.1	protein_coding	myosin-like protein XIF	Encodes an novel myosin isoform.	myosin-like protein XIF;(source:Araport11)
AT2G31940.1	protein_coding			oxidoreductase/transition metal ion-binding protein;(source:Araport11)
AT2G31840.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT2G31890.1	protein_coding	RAP	Protein contains putative RNA binding domain. Expressed in response to Pseudomonas syringae infection. Resistance requires silencing of AtRAP suggesting it functions as a negative regulator of plant disease resistance. Alpha helical repeat protein; only member of the OPR (octotricopeptide repeat) protein family in land plants.	RAP;(source:Araport11)
AT2G31830.1	protein_coding	endonuclease/exonuclease/phosphatase family protein	Encodes a 5-inositol-polyphosphate phosphatase, that, in vitro, shows some activity against Ins(1,4,5)P3 and PI(3,4,5)P3, but even higher activity against PI(4,5)P2	endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT2G31760.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G31880.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes a putative leucine rich repeat transmembrane protein that is expressed in response to Pseudomonas syringae. Expression of SRRLK may be required for silencing via lsiRNAs.  Regulates cell death and innate immunity.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G31820.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT2G31750.1	protein_coding	UDP-glucosyl transferase 74D1	Encodes an auxin glycosyltransferase that is likely to be involved in regulation of auxin by glycosylation.	UDP-glucosyl transferase 74D1;(source:Araport11)
AT2G31870.1	protein_coding	Poly (ADP-ribose) glycohydrolase (PARG)	The gene encodes a poly(ADPribose) glycohydrolase (PARG1). Mutant analysis suggests that PARG1 plays a role in abiotic stress responses and DNA repair. Loss of function mutants accumulate poly(ADPribose) and have increased cell death when treated with bleomycin.	Poly (ADP-ribose) glycohydrolase (PARG);(source:Araport11)
AT2G31810.1	protein_coding	ACT domain-containing small subunit of acetolactate synthase protein		ACT domain-containing small subunit of acetolactate synthase protein;(source:Araport11)
AT2G31740.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G31800.1	protein_coding	Integrin-linked protein kinase family		Integrin-linked protein kinase family;(source:Araport11)
AT2G31790.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G31930.1	protein_coding		protein of unknown function	hypothetical protein;(source:Araport11)
AT2G31920.1	protein_coding	Plant protein of unknown function (DUF936)	Member of a novel, plant specific family of microtubule associated proteins.	elongation factor 1-delta, putative (DUF936);(source:Araport11)
AT2G31910.1	protein_coding	cation/H+ exchanger 21	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 21;(source:Araport11)
AT2G23120.1	protein_coding	Late embryogenesis abundant protein, group 6		Late embryogenesis abundant protein, group 6;(source:Araport11)
AT2G23040.1	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT2G23050.1	protein_coding	Phototropic-responsive NPH3 family protein	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590).  Involved in auxin-mediated organogenesis.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT2G23030.1	protein_coding	SNF1-related protein kinase 2.9	encodes a member of SNF1-related protein kinases (SnRK2)	SNF1-related protein kinase 2.9;(source:Araport11)
AT2G23060.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G23070.1	protein_coding	Protein kinase superfamily protein	Encodes a chloroplast localized subunit of casien kinase4. Functions reduntantly with other alpha subunits (1, 2,and 3) in ABA mediated suppression of seed germination, lateral root development and flowering time.	Protein kinase superfamily protein;(source:Araport11)
AT2G23080.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G23090.1	protein_coding	Uncharacterised protein family SERF		Uncharacterized protein family SERF;(source:Araport11)
AT2G23100.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G23110.1	protein_coding	Late embryogenesis abundant protein, group 6		Late embryogenesis abundant protein, group 6;(source:Araport11)
AT2G23000.1	protein_coding	serine carboxypeptidase-like 10		serine carboxypeptidase-like 10;(source:Araport11)
AT2G23010.1	protein_coding	serine carboxypeptidase-like 9		serine carboxypeptidase-like 9;(source:Araport11)
AT2G32240.1	protein_coding		PAMP induced protein involved in defense response. Interaction with UBAC2 proteins in the ER, is necessary for PAMP mediated accumulation of the callose synthase PMR4.	early endosome antigen;(source:Araport11)
AT2G32060.1	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT2G32150.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G32140.1	protein_coding	transmembrane receptors		transmembrane receptor;(source:Araport11)
AT2G32230.1	protein_coding	proteinaceous RNase P 1	Encodes a protein-only RNase P that is involved in the 5? cleavage of the precursor tRNAs and is able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. Mutants show a drastic reduction in the levels of mature plastid tRNA-Phe(GAA) and tRNA-Arg(ACG), limiting plastid gene expression.	proteinaceous RNase P 1;(source:Araport11)
AT2G31970.1	protein_coding	DNA repair-recombination protein (RAD50)	Encodes the Arabidopsis RAD50 homologue.  It is involved in double strand break repair. Component of the meiotic recombination complex that processes  meiotic double-strand-breaks to produce single-stranded DNA  ends, which act in the homology search and recombination.  Accumulates in the nucleus during meiotic prophase, a process regulated by PHS1.	DNA repair-recombination protein (RAD50);(source:Araport11)
AT2G32130.1	protein_coding	Plant protein of unknown function (DUF641)		intracellular protein transporter, putative (DUF641);(source:Araport11)
AT2G32050.1	protein_coding	Family of unknown function (DUF572) 		cell cycle control-like protein (DUF572);(source:Araport11)
AT2G31960.1	protein_coding	glucan synthase-like 3	encodes a protein similar to callose synthase	glucan synthase-like 3;(source:Araport11)
AT2G32120.1	protein_coding	heat-shock protein 70T-2		heat-shock protein 70T-2;(source:Araport11)
AT2G32040.1	protein_coding	Major facilitator superfamily protein	The At2g32040 gene product has been demonstrated to mediate folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. The gene is expressed in both chloroplast and non-green plastids.	Major facilitator superfamily protein;(source:Araport11)
AT2G32220.1	protein_coding	Ribosomal L27e protein family		Ribosomal L27e protein family;(source:Araport11)
AT2G32100.1	protein_coding	ovate family protein 16		ovate family protein 16;(source:Araport11)
AT2G32030.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G32090.1	protein_coding	Lactoylglutathione lyase / glyoxalase I family protein		Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT2G32020.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G32210.1	protein_coding			cysteine-rich/transmembrane domain A-like protein;(source:Araport11)
AT2G32080.1	protein_coding	purin-rich alpha 1	similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication	purin-rich alpha 1;(source:Araport11)
AT2G32010.1	protein_coding	CVP2 like 1	Encodes an inositol polyphosphate 5’-phosphatase (5PTase).  Mediating phosphoinositide signaling.  Involved in establishment of foliar vein patterns.	CVP2 like 1;(source:Araport11)
AT2G32200.1	protein_coding			cysteine-rich/transmembrane domain A-like protein;(source:Araport11)
AT2G32070.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Deadenylase.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G32000.1	protein_coding	DNA topoisomerase, type IA, core		DNA topoisomerase, type IA, core;(source:Araport11)
AT2G32190.1	protein_coding			cysteine-rich/transmembrane domain A-like protein;(source:Araport11)
AT2G31990.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT2G32180.1	protein_coding	plastid transcriptionally active 18		plastid transcriptionally active 18;(source:Araport11)
AT2G31980.1	protein_coding	PHYTOCYSTATIN 2		PHYTOCYSTATIN 2;(source:Araport11)
AT2G32170.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G32160.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G43000.1	protein_coding	NAC domain containing protein 42	Encodes a NAC transcription factor induced by hydrogen peroxide (H2O2). Involved in senescence. Over expression of the gene  strongly delays senescence and enhances tolerance to various abiotic stresses.	NAC domain containing protein 42;(source:Araport11)
AT2G29980.1	protein_coding	fatty acid desaturase 3	Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor.	fatty acid desaturase 3;(source:Araport11)
AT2G29970.1	protein_coding	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein	Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance. The mRNA is cell-to-cell mobile.	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G30040.1	protein_coding	mitogen-activated protein kinase kinase kinase 14	member of MEKK subfamily	mitogen-activated protein kinase kinase kinase 14;(source:Araport11)
AT2G29960.1	protein_coding	cyclophilin 5	encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.	cyclophilin 5;(source:Araport11)
AT2G29950.1	protein_coding	ELF4-like 1	Member of a small family of proteins containing  DUF1313 domain. Involved in flowering time.	ELF4-like 1;(source:Araport11)
AT2G30020.1	protein_coding	Protein phosphatase 2C family protein	Encodes AP2C1.  Belongs to the clade B of the PP2C-superfamily.  Acts as a MAPK phosphatase that negatively regulates MPK4 and MPK6.	Protein phosphatase 2C family protein;(source:Araport11)
AT2G29940.1	protein_coding	pleiotropic drug resistance 3		pleiotropic drug resistance 3;(source:Araport11)
AT2G30010.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 45	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 45;(source:Araport11)
AT2G30000.1	protein_coding	PHF5-like protein		PHF5-like protein;(source:Araport11)
AT2G29990.1	protein_coding	alternative NAD(P)H dehydrogenase 2		alternative NAD(P)H dehydrogenase 2;(source:Araport11)
AT2G01090.1	protein_coding	Ubiquinol-cytochrome C reductase hinge protein		Ubiquinol-cytochrome C reductase hinge protein;(source:Araport11)
AT2G01100.1	protein_coding			FAM133-like protein;(source:Araport11)
AT2G01040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, disease resistance protein, similar to GB:AAD03361;(source:TAIR10)
AT2G01120.1	protein_coding	origin recognition complex subunit 4	Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.	origin recognition complex subunit 4;(source:Araport11)
AT2G01110.1	protein_coding	Sec-independent periplasmic protein translocase	mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.	Sec-independent periplasmic protein translocase;(source:Araport11)
AT2G01050.1	protein_coding	zinc ion binding;nucleic acid binding		zinc ion binding / nucleic acid binding protein;(source:Araport11)
AT2G01060.1	protein_coding	myb-like HTH transcriptional regulator family protein		myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT2G01070.1	protein_coding	Lung seven transmembrane receptor family protein		Lung seven transmembrane receptor family protein;(source:Araport11)
AT2G01080.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT2G01920.1	protein_coding	ENTH/VHS/GAT family protein		ENTH/VHS/GAT family protein;(source:Araport11)
AT2G01930.1	protein_coding	basic pentacysteine1	BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.	basic pentacysteine1;(source:Araport11)
AT2G12010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.9e-66 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G11880.1	transposable_element_gene	transposable element gene		None;(source:Araport11)
AT2G11850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, PIF1 family of mitochondrial helicases;(source:TAIR10)
AT2G12020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.4e-107 P-value blast match to f23m2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT2G11940.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.0e-189 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G11950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.9e-158 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT2G11970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.1e-30 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G11910.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G11980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 3.1e-58 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT2G11870.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT2G11930.1	pseudogene			pseudogene of hypothetical protein (Protein of unknown function;(source:Araport11)
AT2G11990.1	pseudogene			pseudogene of AGAMOUS-like 57;(source:Araport11)
AT2G12000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, fragment of a MADS-box protein;(source:TAIR10)
AT2G20600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G20580.1	protein_coding	26S proteasome regulatory subunit S2 1A	encoding the RPN subunits of the 26S proteasome The mRNA is cell-to-cell mobile.	26S proteasome regulatory subunit S2 1A;(source:Araport11)
AT2G20590.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT2G20660.1	protein_coding	ralf-like 14	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 14;(source:Araport11)
AT2G20630.1	protein_coding	PP2C induced by AVRRPM1		PP2C induced by AVRRPM1;(source:Araport11)
AT2G20620.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT2G20610.1	protein_coding	Tyrosine transaminase family protein	Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.	Tyrosine transaminase family protein;(source:Araport11)
AT2G12330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.1e-219 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G12400.1	protein_coding			plasma membrane fusion protein;(source:Araport11)
AT2G12420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.9e-19 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G12410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.0e-99 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G12430.1	transposable_element_gene	transposable element gene		hAT-like transposase family (hobo/Ac/Tam3), has a 4.6e-33 P-value blast match to GB:CAA29005 ORFa  of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT2G12340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.6e-31 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G12360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.6e-167 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G12370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.3e-204 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G12380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, myosin-related protein, similar to GB:AAC28203;(source:TAIR10)
AT2G12390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 1.5e-186 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT2G28200.1	protein_coding	C2H2-type zinc finger family protein		C2H2-type zinc finger family protein;(source:Araport11)
AT2G28110.1	protein_coding	Exostosin family protein	Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain.  It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings.	Exostosin family protein;(source:Araport11)
AT2G28190.1	protein_coding	copper/zinc superoxide dismutase 2	Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Activation depends totally on CCS. Overexpression of a miR398-resistant form of CSD2 leads to more dramatic improvements in stress (hight light, Cu2+ and methyl viologen) tolerance than overexpression of wild-type CSD2. The mRNA is cell-to-cell mobile.	copper/zinc superoxide dismutase 2;(source:Araport11)
AT2G28100.1	protein_coding	alpha-L-fucosidase 1	Encodes a protein with &#945;-fucosidase activity. The activity was assessed on 2'-fucosyl-lactitol. AtFUC1 was not able to act on XXFG substrates, at least when heterologously expressed in <i>Pichia pastoris</i>. The enzyme has been postulated to act on fucosylated substrates other than xyloglucan oligosaccharides.  was shown (<i>Pichia pastoris</i>) to hydrolyze fucose in 3- and 4-linkage , hence was characterized as alpha-L-3,4-fucosidase The mRNA is cell-to-cell mobile.	alpha-L-fucosidase 1;(source:Araport11)
AT2G28180.1	protein_coding	Cation/hydrogen exchanger family protein	member of Putative Na+/H+ antiporter family	cation/hydrogen exchanger family protein;(source:Araport11)
AT2G28090.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT2G28170.1	protein_coding	Cation/hydrogen exchanger family protein	member of Putative Na+/H+ antiporter family	Cation/hydrogen exchanger family protein;(source:Araport11)
AT2G28080.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G28160.1	protein_coding	FER-like regulator of iron uptake	Encodes a putative transcription factor that regulates iron uptake responses.  mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency.  The expression of many iron-regulated genes is dependent on FIT1.  It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake.  It is post-transcriptionally controlled.	FER-like regulator of iron uptake;(source:Araport11)
AT2G28150.1	protein_coding	Domain of unknown function (DUF966)	DUF966 domain containing protein, expressed during embryogenesis.	UPSTREAM OF FLC protein (DUF966);(source:Araport11)
AT2G28140.1	protein_coding	Protein of unknown function (DUF1635)		enabled-like protein (DUF1635);(source:Araport11)
AT2G28130.1	protein_coding		NSE5 subunit of the SMC5/6 complex.	actin protein 2/3 complex subunit-like protein;(source:Araport11)
AT2G28120.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G18550.1	protein_coding	homeobox protein 21	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	homeobox protein 21;(source:Araport11)
AT2G18540.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT2G18530.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G18620.1	protein_coding	Terpenoid synthases superfamily protein		Terpenoid synthases superfamily protein;(source:Araport11)
AT2G18520.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G18510.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G18600.1	protein_coding	Ubiquitin-conjugating enzyme family protein		Ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT2G18500.1	protein_coding	ovate family protein 7		ovate family protein 7;(source:Araport11)
AT2G18590.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G18490.1	protein_coding	C2H2-like zinc finger protein	GAZ is a nuclear localized transcriptional activator that is regulated (decreased) by GA and ABA levels. GAZ is expressed in the root stele and may function non-cell autonomously to effect hormone mediated control of ground tissue maturation.	C2H2-like zinc finger protein;(source:Araport11)
AT2G18580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 3.7e-98 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G18570.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G18560.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G32680.1	protein_coding	receptor like protein 23		receptor like protein 23;(source:Araport11)
AT2G32760.1	protein_coding		Homolog of yeast VPS38P. Interacts with PI3K.Mutants have defects in late endosome morphology and  retromer function.	UV radiation resistance-associated protein;(source:Araport11)
AT2G32670.1	protein_coding	vesicle-associated membrane protein 725	member of Synaptobrevin -like protein family	vesicle-associated membrane protein 725;(source:Araport11)
AT2G32750.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT2G32790.1	protein_coding	Ubiquitin-conjugating enzyme family protein		Ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT2G32740.1	protein_coding	galactosyltransferase 13		galactosyltransferase 13;(source:Araport11)
AT2G32780.1	protein_coding	ubiquitin-specific protease 1		ubiquitin-specific protease 1;(source:Araport11)
AT2G32730.1	protein_coding	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit		26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit;(source:Araport11)
AT2G32770.1	protein_coding	purple acid phosphatase 13		purple acid phosphatase 13;(source:Araport11)
AT2G32720.1	protein_coding	cytochrome B5 isoform B	Participates with ELO2 in VLCFA synthesis.	cytochrome B5 isoform B;(source:Araport11)
AT2G32710.1	protein_coding	Cyclin-dependent kinase inhibitor family protein	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI). A member of seven KRP genes found in Arabidopsis thaliana. Negative regulator of cell division. Expressed in actively dividing cells.	Cyclin-dependent kinase inhibitor family protein;(source:Araport11)
AT2G32700.1	protein_coding	LEUNIG_homolog	Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. Involved in cell wall modifications necessary for mucilage extrusion and mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification.	LEUNIG-like protein;(source:Araport11)
AT2G32820.1	protein_coding	Transcription elongation factor (TFIIS) family protein		Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT2G32690.1	protein_coding	glycine-rich protein 23	Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.	glycine-rich protein 23;(source:Araport11)
AT2G32810.1	protein_coding	beta galactosidase 9	putative beta-galactosidase	beta galactosidase 9;(source:Araport11)
AT2G32800.1	protein_coding	protein kinase family protein		protein kinase family protein;(source:Araport11)
AT2G33200.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G33110.1	protein_coding	vesicle-associated membrane protein 723	member of VAMP72 Gene Family	vesicle-associated membrane protein 723;(source:Araport11)
AT2G33190.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box only protein (DUF295);(source:Araport11)
AT2G33100.1	protein_coding	cellulose synthase-like D1	encodes a gene similar to cellulose synthase	cellulose synthase-like D1;(source:Araport11)
AT2G33180.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G33090.1	protein_coding	Transcription elongation factor (TFIIS) family protein		Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT2G33170.1	protein_coding	Leucine-rich repeat receptor-like protein kinase family protein		Leucine-rich repeat receptor-like protein kinase family protein;(source:Araport11)
AT2G33080.1	protein_coding	receptor like protein 28		receptor like protein 28;(source:Araport11)
AT2G33000.1	protein_coding	ubiquitin-associated (UBA)/TS-N domain-containing protein-related		ubiquitin-associated (UBA)/TS-N domain-containing protein-like protein;(source:Araport11)
AT2G33230.1	protein_coding	YUCCA 7	Encodes a flavin monooxygenase gene which belongs to the tryptophan-dependent auxin biosynthetic pathway and enhances drought resistance.	YUCCA 7;(source:Araport11)
AT2G33160.1	protein_coding	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	Gene structure annotation for AT2G33160.1 is inaccurate in TAIR10, see PMID:23709666 and Comments field on the locus page for updated annotation.	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein;(source:Araport11)
AT2G33070.1	protein_coding	nitrile specifier protein 2	Encodes a nitrile-specifier protein NSP2. NSP2 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.	nitrile specifier protein 2;(source:Araport11)
AT2G33150.1	protein_coding	peroxisomal 3-ketoacyl-CoA thiolase 3	Encodes an organellar (peroxisome, glyoxysome) 3-ketoacyl-CoA thiolase, involved in fatty acid b-oxidation during germination and subsequent seedling growth. Mutants have defects in glyoxysomal fatty acid beta-oxidation. EC2.3.1.16 thiolase.	peroxisomal 3-ketoacyl-CoA thiolase 3;(source:Araport11)
AT2G33240.1	protein_coding	myosin XI D	member of Myosin-like proteins	myosin XI D;(source:Araport11)
AT2G33220.1	protein_coding	GRIM-19 protein		GRIM-19 protein;(source:Araport11)
AT2G33130.1	protein_coding	ralf-like 18	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 18;(source:Araport11)
AT2G33060.1	protein_coding	receptor like protein 27		receptor like protein 27;(source:Araport11)
AT2G33210.1	protein_coding	heat shock protein 60-2	Involved in the RNA splicing of rpl2 and ccmFC introns in mitochondria.	heat shock protein 60-2;(source:Araport11)
AT2G33120.1	protein_coding	synaptobrevin-related protein 1	Encodes a member of Synaptobrevin-like protein family. Also known as VESICLE-ASSOCIATED MEMBRANE PROTEIN 722 (VAMP722). Required for cell plate formation. Post-transcriptionally regulated by CRT1/2 under ER stress.	synaptobrevin-related protein 1;(source:Araport11)
AT2G33050.1	protein_coding	receptor like protein 26		receptor like protein 26;(source:Araport11)
AT2G24690.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT2G24520.1	protein_coding	H(+)-ATPase 5		plasma membrane H+-ATPase;(source:Araport11)
AT2G24600.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT2G24680.1	protein_coding	transcriptional factor B3 family protein		transcriptional factor B3 family protein;(source:Araport11)
AT2G24590.1	protein_coding	RNA recognition motif and CCHC-type zinc finger domains containing protein	Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA recognition motif and CCHC-type zinc finger domains containing protein;(source:Araport11)
AT2G24580.1	protein_coding	FAD-dependent oxidoreductase family protein		FAD-dependent oxidoreductase family protein;(source:Araport11)
AT2G24670.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein (DUF313);(source:Araport11)
AT2G24570.1	protein_coding	WRKY DNA-binding protein 17	member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.	WRKY DNA-binding protein 17;(source:Araport11)
AT2G24660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.7e-166 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT2G24560.1	protein_coding	GDSL-like Lipase/Acylhydrolase family protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase family protein;(source:Araport11)
AT2G24650.1	protein_coding	DNA binding;DNA binding;sequence-specific DNA binding transcription factors		B3 domain-containing protein REM13;(source:Araport11)
AT2G24550.1	protein_coding			major centromere autoantigen B-like protein;(source:Araport11)
AT2G24640.1	protein_coding	ubiquitin-specific protease 19		ubiquitin-specific protease 19;(source:Araport11)
AT2G24540.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G24630.1	protein_coding	Glycosyl transferase family 2 protein	encodes a gene similar to cellulose synthase	Glycosyl transferase family 2 protein;(source:Araport11)
AT2G24530.1	protein_coding			transcriptional regulator of RNA polII, SAGA, subunit;(source:Araport11)
AT2G24620.1	protein_coding	S-locus glycoprotein family protein		S-locus glycoprotein family protein;(source:Araport11)
AT2G24610.1	protein_coding	cyclic nucleotide-gated channel 14	member of Cyclic nucleotide gated channel family	cyclic nucleotide-gated channel 14;(source:Araport11)
AT2G23360.1	protein_coding	Plant protein of unknown function (DUF869)		filament-like protein (DUF869);(source:Araport11)
AT2G23450.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G23530.1	protein_coding	Zinc-finger domain of monoamine-oxidase A repressor R1		Zinc-finger domain of monoamine-oxidase A repressor R1;(source:Araport11)
AT2G23460.1	protein_coding	extra-large G-protein 1	encodes a novel G-alpha protein that shares similarity to plant, yeast, and animal G-alpha proteins at the C-terminus. It contains an N-terminus that is as large as the C-terminus, is a member of a small family, and is expressed in all tissues examined, including roots, leaves, stems, flowers, and fruits.	extra-large G-protein 1;(source:Araport11)
AT2G23540.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G23620.1	protein_coding	methyl esterase 1	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	methyl esterase 1;(source:Araport11)
AT2G23470.1	protein_coding	Protein of unknown function, DUF647		root UVB sensitive protein (Protein of unknown function, DUF647);(source:Araport11)
AT2G23370.1	protein_coding			cyclin delta-3;(source:Araport11)
AT2G23480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35794.1);(source:TAIR10)
AT2G23550.1	protein_coding	methyl esterase 6	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.	methyl esterase 6;(source:Araport11)
AT2G23430.1	protein_coding	Cyclin-dependent kinase inhibitor family protein	Encodes a cyclin-dependent kinase inhibitor protein that functions as a negative regulator of cell division and promoter of endoreduplication.  A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Both SKP2b and RKP appear to be involved in the degradation of KRP1.	Cyclin-dependent kinase inhibitor family protein;(source:Araport11)
AT2G23490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29700.1);(source:TAIR10)
AT2G23560.1	protein_coding	methyl esterase 7	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, and methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeGA4, or MEGA9 in vitro. MES7 appears to be involved in MeSA hydrolysis in planta. Expression of MES7 can restore systemic acquired resistance in SAR-deficient tobacco plants.	methyl esterase 7;(source:Araport11)
AT2G23440.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G23380.1	protein_coding	SET domain-containing protein	Similar to the product of the Polycomb-group gene Enhancer of zeste. Catalytic component of the PRC2 complex.Required for stable repression of AG and AP3. Putative role in cell fate determination.  Involved in the control of leaf morphogenesis. mutants exhibit curled, involute leaves. AGAMOUS and APETALA3 are ectopically expressed in the mutant.	SET domain-containing protein;(source:Araport11)
AT2G23500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.4e-80 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G23570.1	protein_coding	methyl esterase 19	Encodes a protein with similarity to SABP2, a methyl salicylate esterase from tobacco. However, this protein is truncated and lacks one of the residues of the predicted catalytic triad, suggesting that it does not have this enzymatic activity.	methyl esterase 19;(source:Araport11)
AT2G23510.1	protein_coding	spermidine disinapoyl acyltransferase		spermidine disinapoyl acyltransferase;(source:Araport11)
AT2G23580.1	protein_coding	methyl esterase 4	Encodes a protein shown to have carboxylesterase activity and methyl salicylate esterase activity in vitro. This protein does not act on methyl IAA, methyl JA, MeGA4, or MEGA9 in vitro.	methyl esterase 4;(source:Araport11)
AT2G23520.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT2G23590.1	protein_coding	methyl esterase 8	Encodes a protein shown to have carboxylesterase activity in vitro.  It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	methyl esterase 8;(source:Araport11)
AT2G23390.1	protein_coding			acyl-CoA;(source:Araport11)
AT2G23600.1	protein_coding	acetone-cyanohydrin lyase	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES2 appears to be involved in MeSA hydrolysis in planta. This protein does not act on MeGA4, or MEGA9 in vitro and has been show to be capable of hydrolyzing methyl ester nicotinate back to nicotinate.	acetone-cyanohydrin lyase;(source:Araport11)
AT2G23400.1	protein_coding	Undecaprenyl pyrophosphate synthetase family protein		Undecaprenyl pyrophosphate synthetase family protein;(source:Araport11)
AT2G23610.1	protein_coding	methyl esterase 3	Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on methyl salicylate, MeGA4, or MEGA9 in vitro.	methyl esterase 3;(source:Araport11)
AT2G23410.1	protein_coding	cis-prenyltransferase	encodes cis-prenyltransferase	cis-prenyltransferase;(source:Araport11)
AT2G23420.1	protein_coding	nicotinate phosphoribosyltransferase 2		nicotinate phosphoribosyltransferase 2;(source:Araport11)
AT2G14810.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G14750.1	protein_coding	APS kinase	Encodes adenosine-5'-phosphosulfate kinase. Provides activated sulfate for  sulfation of secondary metabolites, including the glucosinolates. Essential for pollen viability. The mRNA is cell-to-cell mobile.	APS kinase;(source:Araport11)
AT2G14800.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G14790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.9e-82 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G14780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34710.1);(source:TAIR10)
AT2G14770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1);(source:TAIR10)
AT2G14840.1	pseudogene			pseudogene of phosphoenolpyruvate carboxykinase 1;(source:Araport11)
AT2G14830.1	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Ist1p;(source:Araport11)
AT2G14820.1	protein_coding	Phototropic-responsive NPH3 family protein	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590).  Involved in auxin-mediated organogenesis.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT2G14760.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G21150.1	protein_coding	XAP5 family protein	Encodes a nuclear localized XAP5 family protein involved in light regulation of the circadian clock and photomorphogenesis. XCT loss of function mutations also show decreased levels of DCL1, 3 and 4 and correspondingly lower levels of certain small RNAs suggesting a role in sRNA biogenesis.	XAP5 family protein;(source:Araport11)
AT2G21100.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT2G21210.1	protein_coding	SAUR-like auxin-responsive protein family 	Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers.	SAUR-like auxin-responsive protein family;(source:Araport11)
AT2G21090.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT2G21080.1	protein_coding			Ras guanine nucleotide exchange factor K;(source:Araport11)
AT2G21200.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT2G21070.1	protein_coding	methyltransferases	This gene is predicted to an encode a nuclear-localized protein that is involved in regulating the period of circadian rhythms without affecting their amplitude or robustness. FIONA1 seems to act as a central oscillator-associated component, but its transcript levels are not regulated in a circadian or light-dependent manner. FIONA1 also appears to be involved in photoperiod-dependent flowering.	methyltransferase;(source:Araport11)
AT2G21190.1	protein_coding	ER lumen protein retaining receptor family protein		ER lumen protein retaining receptor family protein;(source:Araport11)
AT2G21180.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G21170.1	protein_coding	triosephosphate isomerase	Encodes a plastidic triose phosphate isomerase. Mutants with reduced pdTPI levels have difficulty transitioning from heterotrophic to autotrophic growth. The related phenotypes, such as chlorosis in light-grown seedlings may result from an accumulation of dihydroxyacetone phosphate (DHAP) and methylglyoxal (MG) in these mutants. Both splice variants appear to be expressed, but the At2g21170.2 variant appears to have a much narrower expression range limited to roots.	triosephosphate isomerase;(source:Araport11)
AT2G21160.1	protein_coding	Translocon-associated protein (TRAP), alpha subunit		Translocon-associated protein (TRAP), alpha subunit;(source:Araport11)
AT2G21230.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	bZIP30 is a transcriptional activator that is involved in regulation of growth and development of reproductive organs. It interacts with a number of developmental regulators including WUS, HEC1, KNAT1/BP, KNAT2, JAB, BEL1, and NGA1.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G21140.1	protein_coding	proline-rich protein 2	Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.	proline-rich protein 2;(source:Araport11)
AT2G21060.1	protein_coding	glycine-rich protein 2B	Glycine-rich protein (AtGRP2b).  Also named as CSP4 (cold shock domain protein 4) containing a well conserved cold shock domain (CSD) and glycine-rich motifs interspersed by two retroviral-like CCHC zinc fingers. AtCSP4 is expressed in all tissues but accumulates in reproductive tissues and those undergoing cell divisions. Overexpression of AtCSP4 reduces silique length and induces embryo lethality.	glycine-rich protein 2B;(source:Araport11)
AT2G21130.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT2G21050.1	protein_coding	like AUXIN RESISTANT 2	Encodes LAX2 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers.  Required for the establishment of embryonic root cell organization.	like AUXIN RESISTANT 2;(source:Araport11)
AT2G21120.1	protein_coding	Protein of unknown function (DUF803)	Encodes a putative magnesium transporter that was identified through a forward genetic screen, directly isolating antiviral RNAi-defective (avi) mutant using a Cucumber Mosaic Virus (CMV) mutant. Compared to Wildtype Col-0, avi2 mutant showed severe disease symptom after viral infection and viral accumulation was significantly increased while viral siRNAs and virus-activated endogenous siRNAs (vasiRNAs) were reduced in avi2 mutant. Detailed genetic study indicated that AVI2 modulated RNAi-mediated antiviral immunity by regulating the biogenesis of secondary viral siRNAs and vasiRNAs in Arabidopsis.	magnesium transporter, putative (DUF803);(source:Araport11)
AT2G21110.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT2G15440.1	protein_coding	Protein of unknown function (DUF579)		polysaccharide biosynthesis protein (DUF579);(source:Araport11)
AT2G15380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.1e-29 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G15430.1	protein_coding	DNA-directed RNA polymerase family protein	Non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V.	DNA-directed RNA polymerase family protein;(source:Araport11)
AT2G15370.1	protein_coding	fucosyltransferase 5	Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1.	fucosyltransferase 5;(source:Araport11)
AT2G15420.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT2G15360.1	protein_coding			fucosyltransferase;(source:Araport11)
AT2G15410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.1e-217 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G15350.1	protein_coding	fucosyltransferase 10	member of Glycosyltransferase Family- 37	fucosyltransferase 10;(source:Araport11)
AT2G15400.1	protein_coding	DNA-directed RNA polymerase family protein	Non-catalytic subunit of Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit.  A closely related paralog, At2g15430 can substitute for At2g15400 in the context of Pol V and encodes the equivalent subunit of Pol II and Pol IV.	DNA-directed RNA polymerase family protein;(source:Araport11)
AT2G15340.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT2G15390.1	protein_coding	fucosyltransferase 4	Encodes an alpha-(1,2)-fucosyltransferase.	fucosyltransferase 4;(source:Araport11)
AT2G15460.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G15450.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G24700.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT2G24710.1	protein_coding	glutamate receptor 2.3	member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.3;(source:Araport11)
AT2G24720.1	protein_coding	glutamate receptor 2.2	member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.2;(source:Araport11)
AT2G24730.1	pseudogene			pseudogene of Ribosomal protein L4/L1 family;(source:Araport11)
AT2G24740.1	protein_coding	SET domain group 21	Encodes a SU(VAR)3-9 homolog, a SET domain protein (Homology Subgroup V; Orthology Group 1). Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. This protein is a putative histone methyltransferase (predicted to methylate H3K9/20) related to the the Drosophila Su(var)3-9 and mammalian G9a proteins.	SET domain group 21;(source:Araport11)
AT2G24750.1	pseudogene			pseudogene of glutamate receptor 2.2;(source:Araport11)
AT2G24760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.9e-16 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G24840.1	protein_coding	AGAMOUS-like 61	Encodes a member of the Agamous-like family of transcription factors. Localized to the nucleus in the central cell and endosperm of the female gametophyte. Loss of function mutations show reduced female fertility. Fifty percent of ovules have defective central cells with abnormal morphology and patterns of gene expression. Upon fertilization 50% of seeds abort. Using yeast two hybrid assays AGL61 was shown to interact with AGL80, another MADS box gene with similar defects in ovule development. These data suggest that AGL61 and 80 together are required for proper differentiation of the central cell.	AGAMOUS-like 61;(source:Araport11)
AT2G24910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35035.1);(source:TAIR10)
AT2G24830.1	protein_coding	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein		zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein;(source:Araport11)
AT2G24820.1	protein_coding	translocon at the inner envelope membrane of chloroplasts 55-II		translocon at the inner envelope membrane of chloroplasts 55-II;(source:Araport11)
AT2G25020.1	pseudogene			pseudogene of DNA repair protein-like protein;(source:Araport11)
AT2G25010.1	protein_coding	Aminotransferase-like, plant mobile domain family protein	Encodes a nuclear localized aminotransferase like protein containing a plant mobile domain. MAIL1 is expressed in the root, SAM, leaves, flowers and embryo. Loss of function mutations display defects in root and shoot growth. In the root, primary root growth terminates early. In the shoot, leaf development is delayed, and lateral organs are smaller than normal. MAIL1 appears to affect meristem cell division and cell fate. Biochemical analysis of the mutants also demonstrates silencing defects. Based on epistasis analysis, this MAIN1 acts in a different pathway than DNA methylation, and siRNA.	Aminotransferase-like, plant mobile domain family protein;(source:Araport11)
AT2G24980.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT2G24900.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07690.1);(source:TAIR10)
AT2G24970.1	protein_coding			spindle/kinetochore-associated protein;(source:Araport11)
AT2G24890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.7e-61 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G24810.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT2G24960.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT2G24800.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G24950.1	protein_coding	Protein of Unknown Function (DUF239)		transmembrane protein, putative (DUF239);(source:Araport11)
AT2G24880.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT2G25000.1	protein_coding	WRKY DNA-binding protein 60	Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both  P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	WRKY DNA-binding protein 60;(source:Araport11)
AT2G24940.1	protein_coding	membrane-associated progesterone binding protein 2		membrane-associated progesterone binding protein 2;(source:Araport11)
AT2G24870.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT2G24990.1	protein_coding	Serine/threonine-protein kinase Rio1		Serine/threonine-protein kinase Rio1;(source:Araport11)
AT2G25050.1	protein_coding	Actin-binding FH2 (Formin Homology) protein		actin-binding FH2 (formin 2) family protein;(source:Araport11)
AT2G24930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G30640.1);(source:TAIR10)
AT2G24860.1	protein_coding	DnaJ/Hsp40 cysteine-rich domain superfamily protein		DnaJ/Hsp40 cysteine-rich domain superfamily protein;(source:Araport11)
AT2G24920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30470.1);(source:TAIR10)
AT2G24850.1	protein_coding	tyrosine aminotransferase 3	Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.	tyrosine aminotransferase 3;(source:Araport11)
AT2G07470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to  MURA transposase of maize Mutator transposon;(source:TAIR10)
AT2G07460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G24100.1	protein_coding			ATP-dependent DNA helicase;(source:Araport11)
AT2G24270.1	protein_coding	aldehyde dehydrogenase 11A3	Encodes a protein with non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase activity. The activity of the enzyme was determined from leaf extracts; the enzyme has not been purified to confirm activity.	aldehyde dehydrogenase 11A3;(source:Araport11)
AT2G24190.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes an aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons in vitro. In addition, this enzyme can reduce methylglyoxal in vitro. It is believed that this enzyme localizes to the cytosol like the closely related protein encoded by AT3G61220.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G24280.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G24200.1	protein_coding	Cytosol aminopeptidase family protein		Cytosol aminopeptidase family protein;(source:Araport11)
AT2G24110.1	pseudogene			pseudogene of ribosomal protein S11-beta;(source:Araport11)
AT2G24210.1	protein_coding	terpene synthase 10		terpene synthase 10;(source:Araport11)
AT2G24120.1	protein_coding	DNA/RNA polymerases superfamily protein		DNA/RNA polymerases superfamily protein;(source:Araport11)
AT2G24220.1	protein_coding	purine permease 5	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 5;(source:Araport11)
AT2G24130.1	protein_coding	Leucine-rich receptor-like protein kinase family protein		Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT2G24230.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G24140.1	protein_coding	Protein of unknown function, DUF593		myosin-J heavy chain-like protein (Protein of unknown function, DUF593);(source:Araport11)
AT2G24240.1	protein_coding	BTB/POZ domain with WD40/YVTN repeat-like protein		BTB/POZ domain with WD40/YVTN repeat-like protein;(source:Araport11)
AT2G24250.1	protein_coding	Protein of unknown function (DUF295)		LOW protein: F-box/kelch-repeat protein (DUF295);(source:Araport11)
AT2G24150.1	protein_coding	heptahelical protein 3	heptahelical transmembrane  protein HHP3	heptahelical protein 3;(source:Araport11)
AT2G24260.1	protein_coding	LJRHL1-like 1	Encodes a basic helix-loop-helix (bHLH) protein that regulates root hair and sperm cell development.  One of the three Arabidopsis homologs of the Lotus japonicus ROOTHAIRLESS1 (LjRHL1) gene: At2g24260 (AtLRL1), At4g30980 (AtLRL2), and At5g58010 (AtLRL3).	LJRHL1-like 1;(source:Araport11)
AT2G24160.1	pseudogene			pseudogene of receptor like protein 37;(source:Araport11)
AT2G24170.1	protein_coding	Endomembrane protein 70 protein family		Endomembrane protein 70 protein family;(source:Araport11)
AT2G24180.1	protein_coding	cytochrome p450 71b6	Encodes a cytochrome P450 monooxygenase that converts indole-3-acetonitrile to indole-3-aldehyde / indole-3-carboxylic acid and cyanide. The mRNA is cell-to-cell mobile.	cytochrome p450 71b6;(source:Araport11)
AT2G19230.1	protein_coding	Leucine-rich repeat transmembrane protein kinase protein		Leucine-rich repeat transmembrane protein kinase protein;(source:Araport11)
AT2G19400.1	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein		AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT2G19330.1	protein_coding	plant intracellular ras group-related LRR 6	Encodes PIRL6, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.	plant intracellular ras group-related LRR 6;(source:Araport11)
AT2G19240.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G19410.1	protein_coding	U-box domain-containing protein kinase family protein		U-box domain-containing protein kinase family protein;(source:Araport11)
AT2G19340.1	protein_coding	Oligosaccharyltransferase complex/magnesium transporter family protein		Oligosaccharyltransferase complex/magnesium transporter family protein;(source:Araport11)
AT2G19250.1	pseudogene			pseudogene of ALBINA 1;(source:Araport11)
AT2G19350.1	protein_coding	Eukaryotic protein of unknown function (DUF872)		transmembrane protein (DUF872);(source:Araport11)
AT2G19260.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G19360.1	protein_coding	Protein of Unknown Function (DUF239)		tRNA-splicing ligase, putative (DUF239);(source:Araport11)
AT2G19270.1	protein_coding			mitotic checkpoint protein PRCC-carboxy-term protein;(source:Araport11)
AT2G19280.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G19290.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G19300.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G19380.1	protein_coding	RNA recognition motif (RRM)-containing protein		RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT2G19310.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT2G19390.1	protein_coding			serine/arginine repetitive matrix protein;(source:Araport11)
AT2G19320.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G40110.1	protein_coding	Yippee family putative zinc-binding protein		Yippee family putative zinc-binding protein;(source:Araport11)
AT2G40120.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G40090.1	protein_coding	ABC2 homolog 9	member of ATH subfamily	ABC2 homolog 9;(source:Araport11)
AT2G40100.1	protein_coding	light harvesting complex photosystem II	Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II The mRNA is cell-to-cell mobile.	light harvesting complex photosystem II;(source:Araport11)
AT2G23720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 6.7e-76 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G23800.1	protein_coding	geranylgeranyl pyrophosphate synthase 2	encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase	geranylgeranyl pyrophosphate synthase 2;(source:Araport11)
AT2G23710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1);(source:TAIR10)
AT2G23700.1	protein_coding	Protein of unknown function, DUF547		Itga6 (Protein of unknown function, DUF547);(source:Araport11)
AT2G23790.1	protein_coding	Protein of unknown function (DUF607)		calcium uniporter (DUF607);(source:Araport11)
AT2G23690.1	protein_coding			HTH-type transcriptional regulator;(source:Araport11)
AT2G23780.1	protein_coding	RING/U-box superfamily protein	Leucine rich extensin protein involved in cell wall biogenesis and organization. Interacts with several members of the RALF family of ligand peptides.	RING/U-box superfamily protein;(source:Araport11)
AT2G23770.1	protein_coding	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein	Encodes a putative LysM-containing receptor-like kinase LYK4. Shares overlapping function with LYK5 in mediating chitin-triggered immune responses. Based on protein sequence alignment analysis, it was determined as a pseudo kinase due to a lack of the ATP-binding P-loop in the kinase domain.	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein;(source:Araport11)
AT2G23760.1	protein_coding	BEL1-like homeodomain 4	Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw2 and saw1 may act redundantly to repress BP in leaves.	BEL1-like homeodomain 4;(source:Araport11)
AT2G23740.1	protein_coding	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding	Encodes a SET-domain protein SUVR5 that mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.	histone-lysine N-methyltransferase SUVR5;(source:Araport11)
AT2G15280.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT2G15260.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G15270.1	protein_coding			PRKR-interacting protein;(source:Araport11)
AT2G15250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.6e-34 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G15320.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT2G15310.1	protein_coding	ADP-ribosylation factor B1A	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins.	ADP-ribosylation factor B1A;(source:Araport11)
AT2G15300.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G15290.1	protein_coding	translocon at inner membrane of chloroplasts 21	Encodes a protein located in the chloroplast inner envelope. The study of mutant defective in the gene product suggests that the protein is involved in the translocation of protein across the envelope membrane into the chloroplast stroma.	translocon at inner membrane of chloroplasts 21;(source:Araport11)
AT2G04840.1	protein_coding	Protein of unknown function (DUF295)		F-box only protein (DUF295);(source:Araport11)
AT2G04830.1	protein_coding	Protein of unknown function (DUF295)		F-box only protein (DUF295);(source:Araport11)
AT2G04760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.8e-38 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G04670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.2e-313 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G04820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.8e-214 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G04750.1	protein_coding	Actin binding Calponin homology (CH) domain-containing protein	Encodes a member of the fimbrin family. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	Actin binding Calponin homology (CH) domain-containing protein;(source:Araport11)
AT2G04810.1	protein_coding	Protein of unknown function (DUF295)		F-box only protein (DUF295);(source:Araport11)
AT2G04740.1	protein_coding	ankyrin repeat family protein		ankyrin repeat family protein;(source:Araport11)
AT2G04660.1	protein_coding	anaphase-promoting complex/cyclosome 2	a highly conserved ubiquitin-protein ligase involved in cell cycle regulation	anaphase-promoting complex/cyclosome 2;(source:Araport11)
AT2G04800.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G04730.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G04650.1	protein_coding	ADP-glucose pyrophosphorylase family protein	KONJAC2 is imilar to sugar pyrophosphorylases but has an insertion of 2 AA in the pyrophosphorylase consensus motif that is highly conserved in GMPPs. KONJAC2 does not display GDP-mannose pyrophosphorylase activity. It can simulate GDP-mannose pyrophosphorylase activity of VTC1.	ADP-glucose pyrophosphorylase family protein;(source:Araport11)
AT2G04790.1	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G04720.1	pseudogene			pseudogene of GTP-binding 2;(source:Araport11)
AT2G04710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.6e-29 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT2G04630.1	protein_coding	RNA polymerase Rpb6	One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit.  Probably redundant with At5g51940.	RNA polymerase Rpb6;(source:Araport11)
AT2G04780.1	protein_coding	FASCICLIN-like arabinoogalactan 7	fasciclin-like arabinogalactan-protein 7 (Fla7). Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinoogalactan 7;(source:Araport11)
AT2G04770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.0e-20 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G04700.1	protein_coding	ferredoxin thioredoxin reductase catalytic beta chain family protein	Encodes catalytic subunit of ferredoxin/thioredoxin reductase.	ferredoxin thioredoxin reductase catalytic beta chain family protein;(source:Araport11)
AT2G04690.1	protein_coding	Pyridoxamine 5'-phosphate oxidase family protein		Pyridoxamine 5-phosphate oxidase family protein;(source:Araport11)
AT2G04870.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G04680.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G04860.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G04850.1	protein_coding	Auxin-responsive family protein		Auxin-responsive family protein;(source:Araport11)
AT2G06430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT2G06440.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.3e-83 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G21720.1	protein_coding	Plant protein of unknown function (DUF639)		ArgH (DUF639);(source:Araport11)
AT2G21630.1	protein_coding	Sec23/Sec24 protein transport family protein		Sec23/Sec24 protein transport family protein;(source:Araport11)
AT2G21620.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	Encodes gene that is induced in response to desiccation; mRNA expression is seen 10 and 24 hrs after start of desiccation treatment.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT2G21610.1	protein_coding	pectinesterase 11		pectinesterase 11;(source:Araport11)
AT2G21680.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G21600.1	protein_coding	endoplasmatic reticulum retrieval protein 1B	Key player of retrieval of ER membrane proteins The mRNA is cell-to-cell mobile.	endoplasmatic reticulum retrieval protein 1B;(source:Araport11)
AT2G21660.1	protein_coding	cold, circadian rhythm, and rna binding 2	Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript.  Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway.   There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus.  A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	cold, circadian rhythm, and rna binding 2;(source:Araport11)
AT2G21590.1	protein_coding	Glucose-1-phosphate adenylyltransferase family protein	Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.	Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT2G21580.1	protein_coding	Ribosomal protein S25 family protein		Ribosomal protein S25 family protein;(source:Araport11)
AT2G21650.1	protein_coding	Homeodomain-like superfamily protein	RSM1 is a member of a small sub-family of single MYB transcription factors. Analysis of overexpressin lines indicate its involvement during early morphogenesis.	Homeodomain-like superfamily protein;(source:Araport11)
AT2G21560.1	protein_coding			nucleolar-like protein;(source:Araport11)
AT2G21640.1	protein_coding		Encodes a protein of unknown function that is a marker for oxidative stress response.Expression in rosette leaves is activated by high concentration of boron.	marker for oxidative stress response protein;(source:Araport11)
AT2G21550.1	protein_coding	Bifunctional dihydrofolate reductase/thymidylate synthase	One of three DRTS genes, this is the most divergent one.THY3/DRTS3 is preferentially expressed in the shoot apex, stipules and root caps.	Bifunctional dihydrofolate reductase/thymidylate synthase;(source:Araport11)
AT2G36290.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G36200.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G36270.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages. Responsible for reducing cadmium uptake, mediated by interaction with MYB49 .	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G36370.1	protein_coding	ubiquitin-protein ligases		ubiquitin-protein ligase;(source:Araport11)
AT2G36310.1	protein_coding	uridine-ribohydrolase 1	Encodes a cytoplasmic nucleoside hydrolase. It has the highest levels of activity with uridine followed by xanthosine. It shows little activity with inosine and none with cytidine. Mutant analyses indicate that it plays a role in purine and pyrimidine catabolism.	uridine-ribohydrolase 1;(source:Araport11)
AT2G36260.1	protein_coding	Iron-sulphur cluster biosynthesis family protein		Iron-sulfur cluster biosynthesis family protein;(source:Araport11)
AT2G36300.1	protein_coding	Integral membrane Yip1 family protein		Integral membrane Yip1 family protein;(source:Araport11)
AT2G36250.1	protein_coding	Tubulin/FtsZ family protein	Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis.  It is involved in chloroplast division.	Tubulin/FtsZ family protein;(source:Araport11)
AT2G36240.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT2G36230.1	protein_coding	Aldolase-type TIM barrel family protein	Encodes a BBMII isomerase involved in histidine  biosynthesis.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT2G36360.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G36220.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G36350.1	protein_coding	Protein kinase superfamily protein	Member of AGC VIIIa Kinase gene family.	Protein kinase superfamily protein;(source:Araport11)
AT2G36210.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT2G36340.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT2G36330.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT2G36320.1	protein_coding	A20/AN1-like zinc finger family protein		A20/AN1-like zinc finger family protein;(source:Araport11)
AT2G01560.1	protein_coding	Plant protein 1589 of unknown function		Plant protein 1589 of unknown function;(source:Araport11)
AT2G01480.1	protein_coding	O-fucosyltransferase family protein	ESMD1 is a golgi localized putative O-fucosyltransferase.	O-fucosyltransferase family protein;(source:Araport11)
AT2G01570.1	protein_coding	GRAS family transcription factor family protein	Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and  inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.	GRAS family transcription factor family protein;(source:Araport11)
AT2G01490.1	protein_coding	phytanoyl-CoA dioxygenase (PhyH) family protein	Encodes a phytanoyl-CoA 2-hydroxylase (PAHX). The mRNA is cell-to-cell mobile.	phytanoyl-CoA dioxygenase (PhyH) family protein;(source:Araport11)
AT2G01440.1	protein_coding	DEAD/DEAH box RNA helicase family protein 		DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT2G01500.1	protein_coding	Homeodomain-like superfamily protein	PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia.  Also involved in regulation of response to low temperature.	Homeodomain-like superfamily protein;(source:Araport11)
AT2G01450.1	protein_coding	MAP kinase 17	MPK17 Map kinase family member. Mutants have increased numbers of peroxisomes a phenotype that can be suppressed by mutations in  PMD1. This and other treatments, suggests a function in control of peroxisome proliferation in salt stress.	MAP kinase 17;(source:Araport11)
AT2G01580.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G01510.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G01460.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G01590.1	protein_coding	chlororespiratory reduction 3	Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity.	chlororespiratory reduction 3;(source:Araport11)
AT2G01520.1	protein_coding	MLP-like protein 328	Encodes a cis-cinnamic acid responsive gene that is a member of the major latex protein-like gene family and plays a role in promoting vegetative growth and delaying &#64258;owering. The mRNA is cell-to-cell mobile.	MLP-like protein 328;(source:Araport11)
AT2G01470.1	protein_coding	SEC12P-like 2 protein	Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER.	SEC12P-like 2 protein;(source:Araport11)
AT2G01530.1	protein_coding	MLP-like protein 329		MLP-like protein 329;(source:Araport11)
AT2G01540.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT2G01550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.9e-48 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT2G01430.1	protein_coding	homeobox-leucine zipper protein 17	ATHB17 is a member of the HD-Zip transcription factor family. It is expressed most strongly in roots at different stages of development and induced by ABA, paraquat, drought, and NaCl treatments. Loss of function mutants are more sensitive to salt and drought stress.The protein is nuclear localized and has been shown to bind to the promoter of SIG5 and other genes.	homeobox-leucine zipper protein 17;(source:Araport11)
AT2G03950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to P0518C01.31, similar to  MURA transposase of maize Mutator transposon;(source:TAIR10)
AT2G04020.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G03960.1	pseudogene			pseudogene of hypothetical protein (DUF239);(source:Araport11)
AT2G04030.1	protein_coding	Chaperone protein htpG family protein	Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response and crucial for protein import into the chloroplast stroma. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR.	Chaperone protein htpG family protein;(source:Araport11)
AT2G03970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to SAE1-S9-protein,  blastp match of 33%25 identity and 1.2e-17 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa};(source:TAIR10)
AT2G03980.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G03920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G03990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G04000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29700.1);(source:TAIR10)
AT2G03940.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.9e-15 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G04010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.3e-76 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G37310.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G37390.1	protein_coding	Chloroplast-targeted copper chaperone protein		Chloroplast-targeted copper chaperone protein;(source:Araport11)
AT2G37320.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G37400.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G37480.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G37330.1	protein_coding	aluminum sensitive 3	Encodes an ABC transporter-like protein, without an ATPase domain, required for aluminum (Al) resistance/tolerance and may function to redistribute accumulated Al away from sensitive tissues in order to protect the growing root from the toxic effects of Al.	aluminum sensitive 3;(source:Araport11)
AT2G37230.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Ribosomal pentatricopeptide repeat protein	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G37340.1	protein_coding	arginine/serine-rich zinc knuckle-containing protein 33	encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	arginine/serine-rich zinc knuckle-containing protein 33;(source:Araport11)
AT2G37410.1	protein_coding	translocase inner membrane subunit 17-2	Mitochondrial inner membrane translocase. Together with AtTIM17-1, TIM17-2 has a long C-terminal extension not present in other TIMs. The extension is located in the outer membrane and so TIM17-2 links the inner and outer mitochondrial membranes. The C-terminal region is essential for protein import into mitochondria via the general import pathway but is not necessary for import via the carrier pathway.	translocase inner membrane subunit 17-2;(source:Araport11)
AT2G37290.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G37500.1	protein_coding	arginine biosynthesis protein ArgJ family		arginine biosynthesis protein ArgJ family;(source:Araport11)
AT2G37420.1	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT2G37300.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G37240.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT2G37360.1	protein_coding	ABC-2 type transporter family protein	Belongs to a clade of five Arabidopsis thaliana ABCG half-transporters that are required for synthesis of an effective suberin barrier in roots and seed coats (ABCG2, ABCG6, and ABCG20) and for synthesis of an intact pollen wall (ABCG1 and ABCG16).	ABC-2 type transporter family protein;(source:Araport11)
AT2G37430.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Encodes a member of the zinc finger family of transcriptional regulators. It is expressed in many root tips, primary roots, cotyledons and hypocotyl. The protein is localized to the nucleus. Overexpression of ZAT11 causes increased root growth and increased sensitivity to nickel ions. The mRNA is cell-to-cell mobile.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT2G37510.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G37370.1	protein_coding			centrosomal protein of 135 kDa-like protein;(source:Araport11)
AT2G37440.1	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT2G37380.1	protein_coding		Encodes a member of the MAKR (MEMBRANE-ASSOCIATED KINASE REGULATOR)  gene family. MAKRs have putative kinase interacting motifs and membrane localization signals. Known members include: AT5G26230 (MAKR1), AT1G64080 (MAKR2), AT2G37380 (MAKR3), AT2G39370 (MAKR4), AT5G52870 (MAKR5) and AT5G52900 (MAKR6).	membrane-associated kinase regulator;(source:Araport11)
AT2G37450.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT2G37250.1	protein_coding	adenosine kinase	encodes adenylate kinase that is located in the chloroplast involved in the coordination of metabolism and growth	adenosine kinase;(source:Araport11)
AT2G37460.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT2G37260.1	protein_coding	WRKY family transcription factor family protein	Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds  are reduced in size but only when the mutant allele is transmitted through the female parent.Loss of function alleles are associated with a reduction in interploidy lethality.	WRKY family transcription factor family protein;(source:Araport11)
AT2G37470.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT2G37270.1	protein_coding	ribosomal protein 5B	One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A.	ribosomal protein 5B;(source:Araport11)
AT2G37280.1	protein_coding	pleiotropic drug resistance 5	Encodes an ATP-binding cassette (ABC) transporter.  Expressed in the vascular tissue of primary stem.	pleiotropic drug resistance 5;(source:Araport11)
AT2G11350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 9.4e-56 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G11340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.5e-221 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G11450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-208 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G11330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.3e-78 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G11440.1	pseudogene			pseudogene of zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT2G11320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase,  blastp match of 41%25 identity and 1.7e-199 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G11430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G11310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.3e-175 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT2G11420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, PIF1 family of mitochondrial helicases;(source:TAIR10)
AT2G11410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.9e-28 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G11300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to GB:AAD38224;(source:TAIR10)
AT2G11380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G11290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.2e-92 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G11370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30590.1);(source:TAIR10)
AT2G11400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G11460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G11360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24900.1);(source:TAIR10)
AT2G11390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.2e-21 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G11280.1	pseudogene			pseudogene of P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT2G21520.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT2G21440.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G21370.1	protein_coding	xylulose kinase-1	Although this gene has a sequence similar to xylulose kinases, several lines of experimental evidence suggest that it does not act on xylulose or deoxy-xylulose.	xylulose kinase-1;(source:Araport11)
AT2G21530.1	protein_coding	SMAD/FHA domain-containing protein 		SMAD/FHA domain-containing protein;(source:Araport11)
AT2G21450.1	protein_coding	chromatin remodeling 34		chromatin remodeling 34;(source:Araport11)
AT2G21380.1	protein_coding	Kinesin motor family protein		Kinesin motor family protein;(source:Araport11)
AT2G21330.1	protein_coding	fructose-bisphosphate aldolase 1		fructose-bisphosphate aldolase 1;(source:Araport11)
AT2G21270.1	protein_coding	ubiquitin fusion degradation 1		ubiquitin fusion degradation 1;(source:Araport11)
AT2G21460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-303 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G21390.1	protein_coding	Coatomer, alpha subunit		Coatomer, alpha subunit;(source:Araport11)
AT2G21470.1	protein_coding	SUMO-activating enzyme 2	Encodes one of the two subunits of the SUMO activation enzyme required during sumolation.  Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.	SUMO-activating enzyme 2;(source:Araport11)
AT2G21400.1	protein_coding	SHI-related sequence3	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	SHI-related sequence3;(source:Araport11)
AT2G21480.1	protein_coding	Malectin/receptor-like protein kinase family protein	BUSP2 plays a smaller role than BUSP1 in pollen tube growth. bups1/2 double mutants have reduced feritlity due to premature rupture of pollen tubes before they reach the ovule but single busp2 mutants are fertile. BUSP2 interacts with RALF4/19 peptide ligands and  ANX1/2 receptors. BUPS/ANX signaling may regulate and promote pollen tube growth.	Malectin/receptor-like protein kinase family protein;(source:Araport11)
AT2G21410.1	protein_coding	vacuolar proton ATPase A2	Vacuolar proton ATPase subunit VHA-a isoform 2. Localized in the tonoplast. Required for efficient nutrient storage but not for sodium accumulation.	vacuolar proton ATPase A2;(source:Araport11)
AT2G21280.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G21490.1	protein_coding	dehydrin LEA		dehydrin LEA;(source:Araport11)
AT2G21420.1	protein_coding	IBR domain containing protein		IBR domain containing protein;(source:Araport11)
AT2G21290.1	protein_coding			30S ribosomal protein S31;(source:Araport11)
AT2G21500.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G21300.1	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT2G21510.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT2G21310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.8e-151 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G21320.1	protein_coding	B-box zinc finger family protein		B-box zinc finger family protein;(source:Araport11)
AT2G21340.1	protein_coding	MATE efflux family protein	Encodes a homolog of the multidrug and toxin extrusion transporter ENHANCED DISEASE SUSCEPTIBILITY5 that is constitutively expressed in green tissues independent of pathogen infection and is expressed in the chloroplast envelope.  Unlike EDS5, it does not contribute to pathogen-induced SA accumulation.	MATE efflux family protein;(source:Araport11)
AT2G21430.1	protein_coding	Papain family cysteine protease		Papain family cysteine protease;(source:Araport11)
AT2G21350.1	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain protein		RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT2G04090.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT2G04050.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT2G04080.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT2G04040.1	protein_coding	MATE efflux family protein	AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including Cd2+.  Expression in rosette leaves is activated by high concentration of boron.Mistakenly referred to as At2g04070 in PMID:11739388.	MATE efflux family protein;(source:Araport11)
AT2G04150.1	pseudogene		pseudogene of F-box family protein	pseudogene of RNI-like superfamily protein;(source:Araport11)
AT2G04140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.1e-12 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT2G04130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.5e-83 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G04120.1	pseudogene			pseudogene of RAB GTPase homolog A2D;(source:Araport11)
AT2G04110.1	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT2G04070.1	protein_coding	MATE efflux family protein	Expression in rosette leaves is activated by high concentration of boron.	MATE efflux family protein;(source:Araport11)
AT2G04100.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT2G04060.1	protein_coding	glycosyl hydrolase family 35 protein		glycosyl hydrolase family 35 protein;(source:Araport11)
AT2G25680.1	protein_coding	molybdate transporter 1	Encodes a high-affinity molybdate transporter. Mutant has reduced concentrations of molybdate  in roots and shoots, and reduced shoot and root length when growing on Mo-limited medium.	molybdate transporter 1;(source:Araport11)
AT2G25590.1	protein_coding	Plant Tudor-like protein		Plant Tudor-like protein;(source:Araport11)
AT2G25690.1	protein_coding	Protein of unknown function (DUF581)		DUF581 family protein, putative (DUF581);(source:Araport11)
AT2G25600.1	protein_coding	Shaker pollen inward K+ channel	Encodes SPIK, a member of the Shaker family potassium ion (K+) channel.  This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500). Mutant plants have impaired pollen-tube growth.	Shaker pollen inward K+ channel;(source:Araport11)
AT2G25700.1	protein_coding	SKP1-like 3	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At3), putative, E3 ubiquitin ligase; similar to fimbriata-associated protein fap1 GI:2673868 from (Antirrhinum majus. Interacts with F-box proteins.	SKP1-like 3;(source:Araport11)
AT2G25610.1	protein_coding	ATPase, F0/V0 complex, subunit C protein		ATPase, F0/V0 complex, subunit C protein;(source:Araport11)
AT2G25710.1	protein_coding	holocarboxylase synthase 1	Encodes a dual-targeted biotin holocarboxylase synthetase that can localize to the chloroplast and the cytosol. In vitro, it has been shown to catalyze the addition of biotin to the BCCP subunit of acetyl-CoA carboxylase and it can also biotinylate methylcrotonyl-CoA carboxylase. A small upstream ORF in the 5'UTR (uORF24) regulates the differential targeting of this enzyme.	holocarboxylase synthase 1;(source:Araport11)
AT2G25620.1	protein_coding	DNA-binding protein phosphatase 1	Encodes DBP1, a member of the DBP factors (DNA-binding protein phosphatases) featuring sequence-specific DNA-binding and protein phosphatase activity.  DBP1 is involved in plant-potyvirus interactions.  Loss-of-function of DBP1 renders resistance to potyviruses.	DNA-binding protein phosphatase 1;(source:Araport11)
AT2G25720.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G25630.1	protein_coding	beta glucosidase 14		beta glucosidase 14;(source:Araport11)
AT2G25640.1	protein_coding	SPOC domain / Transcription elongation factor S-II protein		SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT2G25730.1	protein_coding			zinc finger FYVE domain protein;(source:Araport11)
AT2G25650.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT2G25660.1	protein_coding	embryo defective 2410	Translocon at the inner-envelope membrane of chloroplasts which binds to the outer-membrane channel TOC75.	embryo defective 2410;(source:Araport11)
AT2G25670.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G19500.1	protein_coding	cytokinin oxidase 2	It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase 2;(source:Araport11)
AT2G19580.1	protein_coding	tetraspanin2	Member of TETRASPANIN family	tetraspanin2;(source:Araport11)
AT2G19510.1	protein_coding	LOB domain-containing protein 8		LOB domain-containing protein 8;(source:Araport11)
AT2G19590.1	protein_coding	ACC oxidase 1	encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase	ACC oxidase 1;(source:Araport11)
AT2G19520.1	protein_coding	Transducin family protein / WD-40 repeat family protein	Controls flowering.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G19530.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G19600.1	protein_coding	K+ efflux antiporter 4	member of Putative potassium proton antiporter family	K+ efflux antiporter 4;(source:Araport11)
AT2G19540.1	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G19610.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G19550.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G19620.1	protein_coding	N-MYC downregulated-like 3		N-MYC downregulated-like 3;(source:Araport11)
AT2G19470.1	protein_coding	casein kinase I-like 5	Member of CKL gene family (CKL-B group)	casein kinase I-like 5;(source:Araport11)
AT2G19560.1	protein_coding	proteasome family protein	encodes a protein with a PAM domain involved in ethylene signaling. eer5 mutants show ethylene hypersensitivity in relation to hypocotyl elongation. EER5 interacts with EIN2 and with COP9 in Y2H assays. EIN3 protein levels are the same in WT and eer5-1 mutants. EER5 may be involved in promoting a dampening of the ethylene response.	proteasome family protein;(source:Araport11)
AT2G19630.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G19480.1	protein_coding	nucleosome assembly protein 1;2	This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation. The mRNA is cell-to-cell mobile. Plants mutated in three ubiquitously expressed NAP1 genes (NAP1;1~NAP1;3) and organ-specifically expressed NAP1;4 gene show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. The NAP1 genes act synergistically with NRP genes in promoting somatic homologous recombination.	nucleosome assembly protein 1;(source:Araport11)
AT2G19570.1	protein_coding	cytidine deaminase 1	Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds.	cytidine deaminase 1;(source:Araport11)
AT2G19640.1	protein_coding	ASH1-related protein 2		ASH1-related protein 2;(source:Araport11)
AT2G19490.1	protein_coding	recA DNA recombination family protein		recA DNA recombination family protein;(source:Araport11)
AT2G19650.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G44380.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G44290.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G44210.1	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal peptidase (DUF239);(source:Araport11)
AT2G44300.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G44470.1	protein_coding	beta glucosidase 29		beta glucosidase 29;(source:Araport11)
AT2G44390.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G44310.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT2G44480.1	protein_coding	beta glucosidase 17		beta glucosidase 17;(source:Araport11)
AT2G44400.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G44330.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G44220.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein (DUF239);(source:Araport11)
AT2G44410.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G44340.1	protein_coding	VQ motif-containing protein	VQ18 is an ABA responsive gene and interacts with the ABI5 transcription factor. Along with its paralog VQ26, it is involved in negative regulation of ABA responses during early seedling development.	VQ motif-containing protein;(source:Araport11)
AT2G44490.1	protein_coding	Glycosyl hydrolase superfamily protein	Encodes a glycosyl hydrolase that localizes to peroxisomes and acts as a component of an inducible preinvasion resistance mechanism. Required for mlo resistance. The mRNA is cell-to-cell mobile.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT2G44420.1	protein_coding	protein N-terminal asparagine amidohydrolase family protein		protein N-terminal asparagine amidohydrolase family protein;(source:Araport11)
AT2G44350.1	protein_coding	Citrate synthase family protein	encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA.	Citrate synthase family protein;(source:Araport11)
AT2G44230.1	protein_coding	Plant protein of unknown function (DUF946)		hypothetical protein (DUF946);(source:Araport11)
AT2G44500.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT2G44360.1	protein_coding			ecotropic viral integration site protein;(source:Araport11)
AT2G44430.1	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT2G44240.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein (DUF239);(source:Araport11)
AT2G44510.1	protein_coding	CDK inhibitor P21 binding protein		CDK inhibitor P21 binding protein;(source:Araport11)
AT2G44370.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G44440.1	protein_coding	Emsy N Terminus (ENT) domain-containing protein		Emsy N Terminus (ENT) domain-containing protein;(source:Araport11)
AT2G44250.1	protein_coding	Protein of Unknown Function (DUF239)		tRNA-splicing ligase, putative (DUF239);(source:Araport11)
AT2G44450.1	protein_coding	beta glucosidase 15		beta glucosidase 15;(source:Araport11)
AT2G44260.1	protein_coding	Plant protein of unknown function (DUF946)		DUF946 family protein (DUF946);(source:Araport11)
AT2G44460.1	protein_coding	beta glucosidase 28		beta glucosidase 28;(source:Araport11)
AT2G44270.1	protein_coding	repressor of lrx1	Encodes ROL5, a repressor of lrx1 mutants that develop aberrant root hairs.  ROL5 is a homolog of yeast Ncs6p that affects TOR signaling.  The target of rapamycin (TOR) pathway is a major regulator of cell growth in eukaryotes, and inhibition of this pathway by rapamycin reduces cell growth. ROL5 might function as a mitochondrial component of the TOR pathway that influences the plant's response to ROS (reactive oxygen species).	repressor of lrx1;(source:Araport11)
AT2G44280.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G45960.1	protein_coding	plasma membrane intrinsic protein 1B	a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.	plasma membrane intrinsic protein 1B;(source:Araport11)
AT2G45920.1	protein_coding	U-box domain-containing protein		U-box domain-containing protein;(source:Araport11)
AT2G45840.1	protein_coding	Arabidopsis thaliana protein of unknown function (DUF821)		O-glucosyltransferase rumi-like protein (DUF821);(source:Araport11)
AT2G45910.1	protein_coding	U-box domain-containing protein kinase family protein		U-box domain-containing protein kinase family protein;(source:Araport11)
AT2G45830.1	protein_coding	downstream target of AGL15 2		downstream target of AGL15 2;(source:Araport11)
AT2G45750.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G45900.1	protein_coding	Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related		Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT2G45740.1	protein_coding	peroxin 11D	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. The mRNA is cell-to-cell mobile.	peroxin 11D;(source:Araport11)
AT2G45890.1	protein_coding	RHO guanyl-nucleotide exchange factor 4	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Mutants exhibit longer root hairs under phosphate-deficient conditions. Involved in cell wall patterning. Encodes ROP activator, regulates the formation of ROP-activated domains; these in turn determine the pattern of cell wall pits. Forms a dimer that interacts with activated ROP11 in vivo, which could provide positive feedback for ROP activation. Required for periodic formation of secondary cell wall pits	RHO guanyl-nucleotide exchange factor 4;(source:Araport11)
AT2G45820.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT2G45950.1	protein_coding	SKP1-like 20		SKP1-like 20;(source:Araport11)
AT2G45810.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT2G45880.1	protein_coding	beta-amylase 7	Encodes a beta-amylase-like protein present in the nucleus rather than targeted to the chloroplast. Contains BRASSINAZOLE RESISTANT1 (BZR1)-type DNA binding domains.  Activates gene expression in protoplast transactivation assays.	beta-amylase 7;(source:Araport11)
AT2G45940.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT2G45800.1	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT2G45870.1	protein_coding	Bestrophin-like protein	Encodes a bestrophin-like protein (Best2). Minor isoform (10% transcript of AtBest1). Putative chloride ion channel. Proposed to modulate proton motive force partitioning by mediating chloride ion influx in the thylakoid lumen.	Bestrophin-like protein;(source:Araport11)
AT2G45930.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G45790.1	protein_coding	phosphomannomutase	Encodes a cytoplasmic phosphomannomutase, involved in ascorbate biosynthesis	phosphomannomutase;(source:Araport11)
AT2G45860.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G45850.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT2G45780.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G45770.1	protein_coding	signal recognition particle receptor protein, chloroplast (FTSY)	chloroplast SRP receptor homolog, alpha subunit CPFTSY. Required for LHCP  integration into isolated thylakoids.	signal recognition particle receptor protein, chloroplast (FTSY);(source:Araport11)
AT2G45760.1	protein_coding	BON association protein 2	encodes a protein that is similar to BONZAI1-binding protein BAP1.	BON association protein 2;(source:Araport11)
AT2G45970.1	protein_coding	cytochrome P450, family 86, subfamily A, polypeptide 8	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.	cytochrome P450, family 86, subfamily A, polypeptide 8;(source:Araport11)
AT2G45300.1	protein_coding	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	encodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesis The mRNA is cell-to-cell mobile.	RNA 3-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta;(source:Araport11)
AT2G45380.1	protein_coding			myeloid leukemia factor;(source:Araport11)
AT2G45470.1	protein_coding	FASCICLIN-like arabinogalactan protein 8	Fasciclin-like arabinogalactan protein. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan protein 8;(source:Araport11)
AT2G45210.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT2G45290.1	protein_coding	Transketolase		Transketolase;(source:Araport11)
AT2G45360.1	protein_coding	Protein of unknown function (DUF1442)		ankyrin repeat/KH domain protein (DUF1442);(source:Araport11)
AT2G45200.1	protein_coding	golgi snare 12	Encodes a member of the GOS1 (Golgi SNARE) gene family.	golgi snare 12;(source:Araport11)
AT2G45280.1	protein_coding	RAS associated with diabetes protein 51C	Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay.  Required for female meiosis but not critical for mitosis under normal conditions.	RAS associated with diabetes protein 51C;(source:Araport11)
AT2G45350.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-E subfamily) with 11 pentatricopeptide (PPR) repeats.  The protein is involved in RNA editing of the initiation codon of ndhD in the chloroplast.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G45410.1	protein_coding	LOB domain-containing protein 19		LOB domain-containing protein 19;(source:Araport11)
AT2G45460.1	protein_coding	SMAD/FHA domain-containing protein 		SMAD/FHA domain-containing protein;(source:Araport11)
AT2G45270.1	protein_coding	glycoprotease 1	Mitochondrial protein essential for embryo development.	glycoprotease 1;(source:Araport11)
AT2G45340.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G45400.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	involved in the regulation of brassinosteroid metabolic pathway	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G45190.1	protein_coding	Plant-specific transcription factor YABBY family protein	Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).	Plant-specific transcription factor YABBY family protein;(source:Araport11)
AT2G45260.1	protein_coding	Plant protein of unknown function (DUF641)		myosin-4 protein (DUF641);(source:Araport11)
AT2G45330.1	protein_coding	RNA 2'-phosphotransferase, Tpt1 / KptA family		RNA 2-phosphotransferase, Tpt1 / KptA family;(source:Araport11)
AT2G45250.1	protein_coding	Integral membrane protein hemolysin-III homolog		integral membrane hemolysin-III-like protein;(source:Araport11)
AT2G45320.1	protein_coding			polyphosphatidylinositol phosphatase;(source:Araport11)
AT2G45240.1	protein_coding	methionine aminopeptidase 1A	Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development.	methionine aminopeptidase 1A;(source:Araport11)
AT2G45310.1	protein_coding	UDP-D-glucuronate 4-epimerase 4	UDP-D-glucuronate 4-epimerase	UDP-D-glucuronate 4-epimerase 4;(source:Araport11)
AT2G45450.1	protein_coding	protein binding	ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity.	binding protein;(source:Araport11)
AT2G45230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.9e-46 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT2G45440.1	protein_coding	dihydrodipicolinate synthase	Encodes a protein that likely has dihydropicolinate synthase activity based on its mutant phenotype of decreased lysine levels and increased aspartate levels. The mutant also has increased levels of threonine. The enzyme is predicted to localize to the chloroplast.	dihydrodipicolinate synthase;(source:Araport11)
AT2G45220.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT2G45430.1	protein_coding	AT-hook motif nuclear-localized protein 22	Encodes a nuclear localized AT hook domain containing protein that can bind AT rich DNA in vitro.  Overexpression of the gene results in delayed flowering. Is likely to act redundantly with AHL18, AHL27 and AHL29 in the regulation of flowering.  It is also involved in both photo- and skotomorphogenesis.	AT-hook motif nuclear-localized protein 22;(source:Araport11)
AT2G45420.1	protein_coding	LOB domain-containing protein 18		LOB domain-containing protein 18;(source:Araport11)
AT2G33560.1	protein_coding	BUB1-related (BUB1: budding uninhibited by benzymidazol 1)	Encodes BUBR1.  May have the spindle assembly checkpoint protein functions conserved from yeast to humans.	BUB1-related (BUB1: budding uninhibited by benzymidazol 1);(source:Araport11)
AT2G33570.1	protein_coding	Domain of unknown function (DUF23)		glycosyltransferase family protein (DUF23);(source:Araport11)
AT2G33580.1	protein_coding	Protein kinase superfamily protein	Encodes a putative LysM-containing receptor-like kinase.  LYK5 is a major chitin receptor and forms a chitin-induced complex with related kinase CERK1. Based on protein sequence alignment analysis, it was determined as a pseudo kinase due to a lack of the ATP-binding P-loop in the kinase domain.	Protein kinase superfamily protein;(source:Araport11)
AT2G33410.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Belongs to a member of the RNA-binding glycine-rich (RBG) gene superfamily. The mRNA is cell-to-cell mobile.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G33420.1	protein_coding	Protein of unknown function (DUF810)		hypothetical protein (DUF810);(source:Araport11)
AT2G33430.1	protein_coding	differentiation and greening-like 1	Encodes a multiple organellar RNA editing factor, a chloroplast protein which is required for the maturation of the plastid ribosomal RNAs and is essential for chloroplast differentiation.Member of MORF family consisting of of nine full-length proteins encoded in the nuclear genome. MORF proteins are required for all RNA editing events in plastids and for many, possibly also all, sites in mitochondria. Potential link between the RNA binding PPR protein and the protein contributing the enzymatic activity in RNA editing.	differentiation and greening-like 1 (DAL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT1G32580.1)
AT2G33590.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes a protein with homology to members of the dihydroflavonol-4-reductase (DFR) superfamily. The expression pattern of  AtCRL1 indicates that CRL1 has a role in embryogenesis and seed germination. AtCRL1 is induced by ABA, drought and heat, and is highly expressed in seeds. The mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G33600.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes a protein with homology to  members of the dihydroflavonol-4-reductase (DFR) superfamily. Its expression pattern suggests that AtCRL2 is involved in the synthesis and/or maintenance of vascular tissue.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G33450.1	protein_coding	Ribosomal L28 family		Ribosomal L28 family;(source:Araport11)
AT2G33610.1	protein_coding	switch subunit 3	Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Interacts with BSH, AtSWI3A, SWI3C and FCA. Expressed ubiquitously.	switch subunit 3;(source:Araport11)
AT2G33460.1	protein_coding	ROP-interactive CRIB motif-containing protein 1	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis.	ROP-interactive CRIB motif-containing protein 1;(source:Araport11)
AT2G33620.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT2G33470.1	protein_coding	glycolipid transfer protein 1		glycolipid transfer protein 1;(source:Araport11)
AT2G33270.1	protein_coding	atypical CYS  HIS rich thioredoxin 3	Encodes a member of the thioredoxin family protein.  Located in the chloroplast.	atypical CYS HIS rich thioredoxin 3;(source:Araport11)
AT2G33480.1	protein_coding	NAC domain containing protein 41		NAC domain containing protein 41;(source:Araport11)
AT2G33490.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G33630.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G33640.1	protein_coding	DHHC-type zinc finger family protein	DHHC-type zinc finger family protein that encodes a functional s-acyl transferase.	DHHC-type zinc finger family protein;(source:Araport11)
AT2G33280.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G33290.1	protein_coding	SU(VAR)3-9 homolog 2	Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. Gene is expressed in rosettes, stems, floral buds, and flowers by RT-PCR.	SU(VAR)3-9 homolog 2;(source:Araport11)
AT2G33330.1	protein_coding	plasmodesmata-located protein 3	Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	plasmodesmata-located protein 3;(source:Araport11)
AT2G33340.1	protein_coding	MOS4-associated  complex 3B	Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19.  Associated with the MOS4-Associated Complex (MAC).  Involved in plant innate immunity.	MOS4-associated complex 3B;(source:Araport11)
AT2G33350.1	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT2G33500.1	protein_coding	B-box type zinc finger protein with CCT domain		B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT2G33360.1	protein_coding	Protein of unknown function (DUF3527)		cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527);(source:Araport11)
AT2G33510.1	protein_coding		CFL1 is a negative regulator of cuticle development. Overexpression of CFL1 causes defects in cuticle formation. Interacts with FBH1, FBH3 and HDG1 to regulate cuticle formation.  The physical interaction requires the C terminal 50 amino acids.	ATP-dependent RNA helicase;(source:Araport11)
AT2G33370.1	protein_coding	Ribosomal protein L14p/L23e family protein		Ribosomal protein L14p/L23e family protein;(source:Araport11)
AT2G33520.1	protein_coding			cysteine-rich/transmembrane domain protein A;(source:Araport11)
AT2G33380.1	protein_coding	Caleosin-related family protein	Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to desiccation.  mRNA expression under drought conditions is apparent particularly in leaves and flowers. Isoform of caleosin with a role as a peroxygenase involved in oxylipin metabolism during biotic and abiotic stress. Involved in the production of 2-hydroxy-octadecatrienoic acid.  The peroxygenase has a narrow substrate specificity thus acting as a fatty acid hydroperoxide reductase in vivo.	Caleosin-related family protein;(source:Araport11)
AT2G33260.1	protein_coding	Tryptophan/tyrosine permease		Tryptophan/tyrosine permease;(source:Araport11)
AT2G33300.1	protein_coding	Transcription elongation factor (TFIIS) family protein		Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT2G33390.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G33530.1	protein_coding	serine carboxypeptidase-like 46		serine carboxypeptidase-like 46;(source:Araport11)
AT2G33310.1	protein_coding	auxin-induced protein 13	Auxin induced gene, IAA13 (IAA13).	auxin-induced protein 13;(source:Araport11)
AT2G33400.1	protein_coding			FK506-binding nuclear-like protein;(source:Araport11)
AT2G33540.1	protein_coding	C-terminal domain phosphatase-like 3		C-terminal domain phosphatase-like 3;(source:Araport11)
AT2G33320.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT2G33550.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT2G05110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.6e-51 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G05200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 8.3e-42 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G05280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.4e-30 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT2G05210.1	protein_coding	Nucleic acid-binding, OB-fold-like protein	Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.	Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G05290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41570.1);(source:TAIR10)
AT2G05150.1	pseudogene			pseudogene of Phosphofructokinase family protein;(source:Araport11)
AT2G05220.1	protein_coding	Ribosomal S17 family protein		Ribosomal S17 family protein;(source:Araport11)
AT2G05120.1	protein_coding	Nucleoporin, Nup133/Nup155-like		Nucleoporin, Nup133/Nup155-like protein;(source:Araport11)
AT2G05160.1	protein_coding	CCCH-type zinc fingerfamily protein with RNA-binding domain		CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT2G05230.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT2G05300.1	pseudogene		pseudogene of the F-box protein family 	pseudogene of F-box family protein;(source:Araport11)
AT2G05170.1	protein_coding	vacuolar protein sorting 11	Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis. The mRNA is cell-to-cell mobile.	vacuolar protein sorting 11;(source:Araport11)
AT2G05240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G05310.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G05180.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 6	member of CYP705A	cytochrome P450, family 705, subfamily A, polypeptide 6;(source:Araport11)
AT2G05250.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT2G05320.1	protein_coding	beta-1,2-N-acetylglucosaminyltransferase II		beta-1,2-N-acetylglucosaminyltransferase II;(source:Araport11)
AT2G05190.1	pseudogene			pseudogene of cytochrome P450;(source:Araport11)
AT2G05260.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G05330.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT2G05270.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0.00039 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G05130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.3e-16 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G05140.1	protein_coding	phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein		phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein;(source:Araport11)
AT2G20750.1	protein_coding	expansin B1	member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin B1;(source:Araport11)
AT2G20900.1	protein_coding	diacylglycerol kinase 5		diacylglycerol kinase 5;(source:Araport11)
AT2G20740.1	protein_coding	Tetraspanin family protein		Tetraspanin family protein;(source:Araport11)
AT2G20890.1	protein_coding	photosystem II reaction center PSB29 protein	Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes.  Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane–delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex. The mRNA is cell-to-cell mobile.	photosystem II reaction center PSB29 protein;(source:Araport11)
AT2G20880.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes ERF53, a drought-induced transcription factor. Belongs to the AP2/ERF superfamily, and has a highly conserved AP2 domain. Regulates drought-responsive gene expressions by binding to the GCC box and/or dehydration-responsive element (DRE) in the promoter of downstream genes. Overexpression of AtERF53 driven by the CaMV35S promoter resulted in an unstable drought-tolerant phenotype in T2 transgenic plants. Involved in heat shock response.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G20870.1	protein_coding	cell wall protein precursor, putative		cell wall protein precursor;(source:Araport11)
AT2G20720.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G20710.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G20860.1	protein_coding	lipoic acid synthase 1	LIP1,Lipoic acid synthase,	lipoic acid synthase 1;(source:Araport11)
AT2G20700.1	protein_coding	LORELEI-LIKE-GPI ANCHORED PROTEIN 2	LLG2/3 are involved in regulation of pollen tube growth by trafficking of ANX/BUPS to the apical PM of pollen tubes. In the PM they function as co-receptors  with ANX/BUPS to regulate ROS production.	LORELEI-LIKE-GPI ANCHORED PROTEIN 2;(source:Araport11)
AT2G20690.1	protein_coding	lumazine-binding family protein	A synthetic gene encoding the catalytic domain of the Arabidopsis thaliana gene At2g20690 was recombinant expressed in E. coli demonstrating the molecular function of riboflavin synthase. The mRNA is cell-to-cell mobile.	lumazine-binding family protein;(source:Araport11)
AT2G20680.1	protein_coding	Glycosyl hydrolase superfamily protein	Encodes a mannanase belonging to clade 1 of the GH5 7 phylogenetic tree that exhibits high substrate affinity and catalytic efficiency on mannan substrates with main chains containing both glucose and mannose units such as konjac glucomannan and spruce galactoglucomannan. It is likely a glycoprotein.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT2G20850.1	protein_coding	STRUBBELIG-receptor family 1		STRUBBELIG-receptor family 1;(source:Araport11)
AT2G20840.1	protein_coding	Secretory carrier membrane protein (SCAMP) family protein		Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT2G20830.1	protein_coding	transferases;folic acid binding		folic acid binding / transferase;(source:Araport11)
AT2G20820.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G20810.1	protein_coding	galacturonosyltransferase 10	Galacturonosyltransferase,regulator of root meristem maintenance.	galacturonosyltransferase 10;(source:Araport11)
AT2G20800.1	protein_coding	NAD(P)H dehydrogenase B4		NAD(P)H dehydrogenase B4;(source:Araport11)
AT2G20790.1	protein_coding	clathrin adaptor complexes medium subunit family protein		clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT2G20780.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G20770.1	protein_coding	GCR2-like 2	Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor.GCL2 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.	GCR2-like 2;(source:Araport11)
AT2G20930.1	protein_coding	SNARE-like superfamily protein	Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	SNARE-like superfamily protein;(source:Araport11)
AT2G20920.1	protein_coding	Protein of unknown function (DUF3353)		chaperone (DUF3353);(source:Araport11)
AT2G20910.1	pseudogene			pseudogene of ATPase;(source:Araport11)
AT2G20760.1	protein_coding	Clathrin light chain protein		Clathrin light chain protein;(source:Araport11)
AT2G06140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32605.1);(source:TAIR10)
AT2G06060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.7e-05 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT2G06130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.7e-30 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G06050.1	protein_coding	oxophytodienoate-reductase 3	Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. Shows activity towards 2,4,6-trinitrotoluene.  CFA-Ile, CFA-Leu, CFA-Val, CFA-Met and CFA-Ala can restore the fertility of opr3 plants by inducing filament elongation and anther dehiscence.	oxophytodienoate-reductase 3;(source:Araport11)
AT2G06180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15600.1);(source:TAIR10)
AT2G06170.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.7e-91 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G06110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.4e-72 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G06040.1	protein_coding		Contributes to UV tolerance through nucleotide excision repair.	F-box/LRR protein;(source:Araport11)
AT2G06160.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G06150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-68 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G06090.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT2G06020.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT2G06080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase,  blastp match of 38%25 identity and 7.7e-40 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus};(source:TAIR10)
AT2G06010.1	protein_coding	OBP3-responsive gene 4	encodes a novel protein whose expression level is induced in lines overexpressing salicylic-acid (SA)-inducible Arabidopsis DNA binding with one finger (Dof) transcription factor, called OBF-binding protein 3.	OBP3-responsive protein 4 (ORG4);(source:Araport11)
AT2G06070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.1e-114 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT2G06210.1	protein_coding	binding	Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit.  Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin.  Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. Member of PAF-C complex.	binding protein;(source:Araport11)
AT2G06200.1	protein_coding	growth-regulating factor 6	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower	growth-regulating factor 6;(source:Araport11)
AT2G06190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.2e-36 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT2G02210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT2G02130.1	protein_coding	low-molecular-weight cysteine-rich 68	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. The mRNA is cell-to-cell mobile.	low-molecular-weight cysteine-rich 68;(source:Araport11)
AT2G02200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to At2g04970, At2g15200, At1g32830, At2g14140, At3g30450, At4g03990, At5g34895, At3g47270;(source:TAIR10)
AT2G02120.1	protein_coding	Scorpion toxin-like knottin superfamily protein	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	Scorpion toxin-like knottin superfamily protein;(source:Araport11)
AT2G02190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.3e-81 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G02110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.7e-36 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT2G02180.1	protein_coding	tobamovirus multiplication protein 3	Necessary for the efficient multiplication of tobamoviruses. The mRNA is cell-to-cell mobile.	tobamovirus multiplication protein 3;(source:Araport11)
AT2G02100.1	protein_coding	low-molecular-weight cysteine-rich 69	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. The mRNA is cell-to-cell mobile.	low-molecular-weight cysteine-rich 69;(source:Araport11)
AT2G02170.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT2G02090.1	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein		SNF2 domain-containing protein / helicase domain-containing protein;(source:Araport11)
AT2G02160.1	protein_coding	CCCH-type zinc finger family protein		CCCH-type zinc finger family protein;(source:Araport11)
AT2G02080.1	protein_coding	indeterminate(ID)-domain 4	C2H2 BIRD transcription factor family.	indeterminate(ID)-domain 4;(source:Araport11)
AT2G02150.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G02070.1	protein_coding	indeterminate(ID)-domain 5	RAVEN is part of the network regulated by BLJUEJAY, JACKDAW, SACRECROW and SHORT-ROOT to regulate root tissue patterning through cell lineage specification and asymmetric cell division. RAVEN is directly activated by SHORT-ROOT and directly repressed by JACKDAW.	indeterminate(ID)-domain 5;(source:Araport11)
AT2G02140.1	protein_coding	low-molecular-weight cysteine-rich 72	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	low-molecular-weight cysteine-rich 72;(source:Araport11)
AT2G43910.1	protein_coding	HARMLESS TO OZONE LAYER 1		HARMLESS TO OZONE LAYER 1;(source:Araport11)
AT2G43970.1	protein_coding	RNA-binding protein		RNA-binding protein;(source:Araport11)
AT2G44050.1	protein_coding	6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase	6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase [Arabidopsis thaliana]. Acts in the jasmonic acid signaling pathway. The mRNA is cell-to-cell mobile.	6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase;(source:Araport11)
AT2G43980.1	protein_coding	inositol 1,3,4-trisphosphate 5/6-kinase 4		inositol 1,3,4-trisphosphate 5/6-kinase 4;(source:Araport11)
AT2G44060.1	protein_coding	Late embryogenesis abundant protein, group 2		Late embryogenesis abundant protein, group 2;(source:Araport11)
AT2G44140.1	protein_coding	Peptidase family C54 protein		Peptidase family C54 protein;(source:Araport11)
AT2G43990.1	protein_coding			GPI-anchored adhesin-like protein;(source:Araport11)
AT2G43890.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G44150.1	protein_coding	histone-lysine N-methyltransferase ASHH3	Encodes a protein-lysine N-methyltransferase. Located in ER.	histone-lysine N-methyltransferase ASHH3;(source:Araport11)
AT2G44000.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT2G44070.1	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein		NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT2G43920.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G44160.1	protein_coding	methylenetetrahydrofolate reductase 2	methylenetetrahydrofolate reductase MTHFR2 mRNA, complete The mRNA is cell-to-cell mobile.	methylenetetrahydrofolate reductase 2;(source:Araport11)
AT2G44010.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G44080.1	protein_coding	ARGOS-like	Encodes ARL, a gene similar to ARGOS involved in cell expansion-dependent organ growth. Upregulated by brassinosteroid. Acts downstream of BRI1. The mRNA is cell-to-cell mobile.	ARGOS-like protein;(source:Araport11)
AT2G43930.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G43900.1	protein_coding	Endonuclease/exonuclease/phosphatase family protein	Encodes a 5-inositol-phosphate phosphatase, that, in vitro, shows activity against IP(1,4,5).	Endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT2G44020.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT2G44090.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT2G43940.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G44170.1	pseudogene			pseudogene of myristoyl-CoA:protein N-myristoyltransferase;(source:Araport11)
AT2G44030.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G44100.1	protein_coding	guanosine nucleotide diphosphate dissociation inhibitor 1	GDP dissociation inhibitor involved in vesicular membrane traffic	guanosine nucleotide diphosphate dissociation inhibitor 1;(source:Araport11)
AT2G43950.1	protein_coding	chloroplast outer envelope protein 37	Constitutes a peptide sensitive ion  channel in chloroplast outer membranes. Accumulates in germinating  seeds and developing embryos.	chloroplast outer envelope protein 37;(source:Araport11)
AT2G44180.1	protein_coding	methionine aminopeptidase 2A	Encodes a MAP2 like methionine aminopeptidase. In MAP1A mutant background plants show an increased sensitivity to fumagillin resulting in defects in development. Phenotype is similar to RNAi lines which knock out all MAP2/MAP1 loci.	methionine aminopeptidase 2A;(source:Araport11)
AT2G44040.1	protein_coding	Dihydrodipicolinate reductase, bacterial/plant		Dihydrodipicolinate reductase, bacterial/plant;(source:Araport11)
AT2G44110.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO15 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root tips and flower (papillae, anthers and pollen grains), as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT2G43960.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT2G44190.1	protein_coding	Family of unknown function (DUF566) 	Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo.	ENDOSPERM DEFECTIVE protein (DUF566);(source:Araport11)
AT2G44120.1	protein_coding	Ribosomal protein L30/L7 family protein		Ribosomal protein L30/L7 family protein;(source:Araport11)
AT2G44130.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	Encodes a member of a family of F-box proteins, called the KISS ME DEADLY (KMD) family. Component of SCF ubiquitin protein ligase, interacts with phenylalanine ammonia-lyase. AtKFB39 is a homolog of previously identified AtKFB50 (At3g59940) and specifically interacts with Arabidopsis PAL3 and PAL4 in vitro. In planta, together with AtKFB01, KFB20 and KFB50, it regulates PAL protein stability thus controlling phenylpropanoid biosynthesis .	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G19790.1	protein_coding	SNARE-like superfamily protein	Encodes a component of the AP4 complex and is involved in vacuolar sorting of storage proteins.	SNARE-like superfamily protein;(source:Araport11)
AT2G19870.1	protein_coding	tRNA/rRNA methyltransferase (SpoU) family protein		tRNA/rRNA methyltransferase (SpoU) family protein;(source:Araport11)
AT2G19780.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT2G19860.1	protein_coding	hexokinase 2	Encodes a protein with hexokinase activity (AtHXK2) and acts as a sensor for plant sugar responses.	hexokinase 2;(source:Araport11)
AT2G19700.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G19950.1	protein_coding	golgin candidate 1	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast.  A fluorescently-tagged version of GC1 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (558-715 aa) portion of the protein.	golgin Putative 1;(source:Araport11)
AT2G19850.1	protein_coding			transcription repressor;(source:Araport11)
AT2G19690.1	protein_coding	phospholipase A2-beta	Encodes one of the four Arabidopsis phospholipase PLA2 parologs: AT2G06925 (PLA2-ALPHA), AT2G19690 (PLA2-BETA), AT4G29460 (PLA2-GAMMA) and AT4G29470 (PLA2-DELTA). Involved in pollen development and germination and tube growth. Also involved in stomatal opening in response to light.	phospholipase A2-beta;(source:Araport11)
AT2G19770.1	protein_coding	profilin 5	Encodes profilin 5, originally named profilin 4 (PRO4/PFN4). Low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Pollen-specific plant profilin present predominantly in mature pollen and growing pollen tubes.	profilin 5;(source:Araport11)
AT2G19840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.5e-301 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G19890.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G19680.1	protein_coding	Mitochondrial ATP synthase subunit G protein		Mitochondrial ATP synthase subunit G protein;(source:Araport11)
AT2G19760.1	protein_coding	profilin 1	first member of the Arabidopsis profilin multigene family, expressed in all organs of Arabidopsis.  Binds poly-L-proline. The first intron of PRF1 enhances gene expression in vegetative tissues.	profilin 1;(source:Araport11)
AT2G19830.1	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT2G19880.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Encodes Glucosylceramide synthase (GCS) which catalyzes the final step in glucosylceramide (GlcCer) synthesis by transferring a glucosyl residue from UDP-Glc to the ceramide backbone.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT2G19940.1	protein_coding	oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding		Putative N-acetyl-gamma-glutamyl-phosphate reductase;(source:Araport11)
AT2G19750.1	protein_coding	Ribosomal protein S30 family protein		Ribosomal protein S30 family protein;(source:Araport11)
AT2G19820.1	protein_coding	LOB domain-containing protein 9		LOB domain-containing protein 9;(source:Araport11)
AT2G19670.1	protein_coding	protein arginine methyltransferase 1A		protein arginine methyltransferase 1A;(source:Araport11)
AT2G19740.1	protein_coding	Ribosomal protein L31e family protein		Ribosomal protein L31e family protein;(source:Araport11)
AT2G19810.1	protein_coding	CCCH-type zinc finger family protein	Encodes Oxidation-related Zinc Finger 1 (OZF1), a plasma membrane protein involved in oxidative stress.	CCCH-type zinc finger family protein;(source:Araport11)
AT2G19730.1	protein_coding	Ribosomal L28e protein family		Ribosomal L28e protein family;(source:Araport11)
AT2G19800.1	protein_coding	myo-inositol oxygenase 2	Encodes a myo-inositol oxygenase family gene.	myo-inositol oxygenase 2;(source:Araport11)
AT2G19930.1	protein_coding	RNA-dependent RNA polymerase family protein		RNA-dependent RNA polymerase family protein;(source:Araport11)
AT2G19720.1	protein_coding	ribosomal protein S15A B		ribosomal protein S15A B;(source:Araport11)
AT2G19920.1	protein_coding	RNA-dependent RNA polymerase family protein		RNA-dependent RNA polymerase family protein;(source:Araport11)
AT2G19710.1	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT2G19910.1	protein_coding	RNA-dependent RNA polymerase family protein		RNA-dependent RNA polymerase family protein;(source:Araport11)
AT2G19900.1	protein_coding	NADP-malic enzyme 1	The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. The enzyme is active in vitro and appears to function as a homohexamer or homooctamer. It is believed to be a cytosolic protein.	NADP-malic enzyme 1;(source:Araport11)
AT2G29890.1	protein_coding	villin-like 1	Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed.  Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding.  VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.	villin-like 1;(source:Araport11)
AT2G29900.1	protein_coding	Presenilin-2	Encodes a gamma-secretase subunit.  Associates with other subunits in intracellular membrane compartments.	Presenilin-2;(source:Araport11)
AT2G29910.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT2G10140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.7e-140 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT2G09990.1	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT2G10150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.6e-16 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT2G10070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40125.1);(source:TAIR10)
AT2G10000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 3.1e-154 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT2G09890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, PIF1 family of mitochondrial helicases;(source:TAIR10)
AT2G10080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.2e-58 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G09900.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40115.1);(source:TAIR10)
AT2G10090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04460.1);(source:TAIR10)
AT2G10020.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G09910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1);(source:TAIR10)
AT2G10100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.6e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 3.2e-53 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT2G09920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.5e-132 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G10110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06914.1);(source:TAIR10)
AT2G09930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.4e-18 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G09950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.0e-132 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G09960.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);expressed protein, includes At2g05890, At4g07450, At3g30630, At3g43100, At2g09960, At3g30550, At1g39430, At2g10460, At4g03640, At5g35250;(source:TAIR10)
AT2G10040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 9.4e-143 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT2G09970.1	protein_coding	Protein of unknown function (DUF1677)		DUF1677 family protein (DUF1677);(source:Araport11)
AT2G10050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to pol polyprotein-like [Solanum tuberosum] (GB:AAU89775.1);(source:TAIR10)
AT2G10130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase,  blastp match of 35%25 identity and 4.0e-70 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus};(source:TAIR10)
AT2G04590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.6e-28 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G04580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22440.1);(source:TAIR10)
AT2G04620.1	protein_coding	Cation efflux family protein	Encodes a Zn transporter that localizes to the Golgi apparatus and forms a functional complex with AtMTP5t1 to transport Zn into the Golgi.	zinc transporter-like protein;(source:Araport11)
AT2G04610.1	pseudogene			pseudogene of cysteine synthase C1;(source:Araport11)
AT2G04600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13865.1);(source:TAIR10)
AT2G42820.1	protein_coding	HVA22-like protein F		HVA22-like protein F;(source:Araport11)
AT2G42810.1	protein_coding	protein phosphatase 5.2	Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. It localizes to the cytoplasm in darkness and in the nucleus in light. The gene is alternately spliced. This variant does not contain membrane domains.	protein phosphatase 5.2;(source:Araport11)
AT2G42730.1	protein_coding	F-box family protein		F-box/FBD/LRR protein;(source:Araport11)
AT2G42880.1	protein_coding	MAP kinase 20	member of MAP Kinase	MAP kinase 20;(source:Araport11)
AT2G42720.1	protein_coding	FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein		FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT2G42800.1	protein_coding	receptor like protein 29		receptor like protein 29;(source:Araport11)
AT2G42870.1	protein_coding	phy rapidly regulated 1	Encodes PHYTOCHROME RAPIDLY REGULATED1 (PAR1), an atypical basic helix-loop-helix (bHLP) protein.  Closely related to PAR2 (At3g58850).  Up regulated after simulated shade perception.  Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response.  Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).	phy rapidly regulated 1;(source:Araport11)
AT2G42790.1	protein_coding	citrate synthase 3	Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.	citrate synthase 3;(source:Araport11)
AT2G42860.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G42780.1	protein_coding			transcription elongation factor B polypeptide;(source:Araport11)
AT2G42850.1	protein_coding	cytochrome P450, family 718		cytochrome P450, family 718;(source:Araport11)
AT2G42770.1	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT2G42840.1	protein_coding	protodermal factor 1	Encodes a putative extracellular proline-rich protein is exclusively expressed in the L1 layer of vegetative, inflorescence and floral meristems and the protoderm of organ primordia.	protodermal factor 1;(source:Araport11)
AT2G42760.1	protein_coding			DUF1685 family protein;(source:Araport11)
AT2G42830.1	protein_coding	K-box region and MADS-box transcription factor family protein 	AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT2G42750.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT2G42740.1	protein_coding	ribosomal protein large subunit 16A	encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.	ribosomal protein large subunit 16A;(source:Araport11)
AT2G21860.1	protein_coding	violaxanthin de-epoxidase-related		violaxanthin de-epoxidase-like protein;(source:Araport11)
AT2G21780.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G21870.1	protein_coding	copper ion binding;cobalt ion binding;zinc ion binding	Encodes the FAd subunit of mitochondrial F1F0-ATP synthase.  Essential for pollen formation.	MALE GAMETOPHYTE DEFECTIVE 1;(source:Araport11)
AT2G21790.1	protein_coding	ribonucleotide reductase 1	encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair	ribonucleotide reductase 1;(source:Araport11)
AT2G21960.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G21880.1	protein_coding	RAB GTPase homolog 7A		RAB GTPase homolog 7A;(source:Araport11)
AT2G21800.1	protein_coding	essential meiotic endonuclease 1A	Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.	essential meiotic endonuclease 1A;(source:Araport11)
AT2G21970.1	protein_coding	stress enhanced protein 2	stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein	stress enhanced protein 2;(source:Araport11)
AT2G21890.1	protein_coding	cinnamyl alcohol dehydrogenase homolog 3		cinnamyl alcohol dehydrogenase homolog 3;(source:Araport11)
AT2G21810.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G21900.1	protein_coding	WRKY DNA-binding protein 59	member of WRKY Transcription Factor; Group II-c	WRKY DNA-binding protein 59;(source:Araport11)
AT2G21820.1	protein_coding			seed maturation protein;(source:Araport11)
AT2G21730.1	protein_coding	cinnamyl alcohol dehydrogenase homolog 2		cinnamyl alcohol dehydrogenase homolog 2;(source:Araport11)
AT2G21980.1	protein_coding			HAUS augmin-like complex subunit;(source:Araport11)
AT2G21910.1	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 5	member of CYP96A	cytochrome P450, family 96, subfamily A, polypeptide 5;(source:Araport11)
AT2G21830.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G21740.1	protein_coding	Protein of unknown function (DUF1278)	Encodes a small cysteine-rich protein that is secreted by the egg cell during gamete interactions. The regulated secretion of EC1 by the egg cell upon sperm-egg interaction is proposed to ensure the appropriate localization of the cell-fusion machinery in distinct sperm membrane domains to accomplish gamete fusion.	Egg cell-secreted-like protein (DUF1278);(source:Araport11)
AT2G21990.1	protein_coding	Protein of unknown function, DUF617		MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT2G21920.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G21840.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G21750.1	protein_coding	Protein of unknown function (DUF1278)	Encodes a small cysteine-rich protein that is secreted by the egg cell during gamete interactions. The regulated secretion of EC1 by the egg cell upon sperm-egg interaction is proposed to ensure the appropriate localization of the cell-fusion machinery in distinct sperm membrane domains to accomplish gamete fusion.	Egg cell-secreted protein (DUF1278);(source:Araport11)
AT2G22000.1	protein_coding	elicitor peptide 6 precursor		elicitor peptide 6 precursor;(source:Araport11)
AT2G21930.1	protein_coding	F-box associated ubiquitination effector family protein	A paternally expressed imprinted gene.	F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G21850.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G21770.1	protein_coding	cellulose synthase A9	cellulose synthase, related to CESA6.	cellulose synthase A9;(source:Araport11)
AT2G22010.1	protein_coding	related to KPC1	Encodes a protein predicted to act as a RING E3 ubiquitin ligase. It appears to regulate the stability of the KRP1/ICK1 cyclin dependent kinase inhibitor.  Induced by beet severe curly virus (BSCTV) C4 protein.	related to KPC1;(source:Araport11)
AT2G21940.1	protein_coding	shikimate kinase 1	Encodes a shikimate kinase. Its transcripts appear to be expressed most highly in mature embryos and senescing leaves, and its transcript levels rise during heat stress and recovery. It is believed to be localized to the chloroplast.	shikimate kinase 1;(source:Araport11)
AT2G21950.1	protein_coding	SKP1 interacting partner 6	Encodes an SKP1 interacting partner (SKIP6).	SKP1 interacting partner 6;(source:Araport11)
AT2G11840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.2e-173 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G11750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.0e-85 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G11830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47225.1);(source:TAIR10)
AT2G11740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 4.3e-88 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G11820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.3e-40 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G11730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.2e-39 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G11810.1	protein_coding	monogalactosyldiacylglycerol synthase type C	MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation.  Does not contribute to galactolipid synthesis under P1-sufficient conditions.	monogalactosyldiacylglycerol synthase type C;(source:Araport11)
AT2G11700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.2e-72 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G11800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.1e-14 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G11690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 4.8e-34 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT2G11790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.6e-58 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G11680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.4e-54 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii);(source:TAIR10)
AT2G11780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G11770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.2e-100 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT2G11720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.1e-150 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G31060.1	protein_coding	elongation factor family protein		elongation factor family protein;(source:Araport11)
AT2G30990.1	protein_coding	Protein of unknown function (DUF688)		arginine N-methyltransferase, putative (DUF688);(source:Araport11)
AT2G30920.1	protein_coding	coenzyme Q 3	The enzyme encoded by this gene has been shown to complement the Saccharomyces cerevisiae coq3 mutation and, therefore, to have hexaprenyldihydroxybenzoate methyltransferase activity.  It is however likely that, in Arabidopsis, the enzyme catalyzes the methylation of nonaprenyldihydroxybenzoate as it is the prevalent polyprenoid in this plant species. The enzyme is a mitochondrial-localized methyltransferase involved in ubiquinone biosynthesis.	coenzyme Q 3;(source:Araport11)
AT2G30820.1	protein_coding			aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit;(source:Araport11)
AT2G30930.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G30830.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G31010.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G30940.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G30840.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G31020.1	protein_coding	OSBP(oxysterol binding protein)-related protein 1A		OSBP(oxysterol binding protein)-related protein 1A;(source:Araport11)
AT2G30950.1	protein_coding	FtsH extracellular protease family	Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. In plsp1-1 mutant plastids, the nonmature form of the protein localizes in the membrane.	FtsH extracellular protease family;(source:Araport11)
AT2G30860.1	protein_coding	glutathione S-transferase PHI 9	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase PHI 9;(source:Araport11)
AT2G31030.1	protein_coding	OSBP(oxysterol binding protein)-related protein 1B		OSBP(oxysterol binding protein)-related protein 1B;(source:Araport11)
AT2G30960.1	protein_coding			myosin-M heavy chain-like protein;(source:Araport11)
AT2G30870.1	protein_coding	glutathione S-transferase PHI 10	early dehydration-induced gene ERD13 homologous to tobacco and maize glutathione S-transferases.  Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002)	glutathione S-transferase PHI 10;(source:Araport11)
AT2G30880.1	protein_coding	Pleckstrin homology (PH) domain-containing protein		Pleckstrin homology (PH) domain-containing protein;(source:Araport11)
AT2G30890.1	protein_coding	Cytochrome b561/ferric reductase transmembrane protein family		Cytochrome b561/ferric reductase transmembrane protein family;(source:Araport11)
AT2G30970.1	protein_coding	aspartate aminotransferase 1	ASPARTATE AMINOTRANSFERASE 1	aspartate aminotransferase 1;(source:Araport11)
AT2G30900.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 43	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 43;(source:Araport11)
AT2G30980.1	protein_coding	SHAGGY-related protein kinase dZeta	Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.	SHAGGY-related protein kinase dZeta;(source:Araport11)
AT2G30910.1	protein_coding	actin-related protein C1A		actin-related protein C1A;(source:Araport11)
AT2G30810.1	protein_coding	Gibberellin-regulated family protein		Gibberellin-regulated family protein;(source:Araport11)
AT2G16160.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45080.1);(source:TAIR10)
AT2G16080.1	pseudogene			pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT2G16170.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12110.1);(source:TAIR10)
AT2G16090.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G16020.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G16100.1	pseudogene		pseudogene hypothetical protein	pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT2G16030.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G16180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT2G16110.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT2G16040.1	protein_coding	hAT dimerisation domain-containing protein / transposase-related		hAT dimerization domain-containing protein / transposase-like protein;(source:Araport11)
AT2G16120.1	protein_coding	polyol/monosaccharide transporter 1		polyol/monosaccharide transporter 1;(source:Araport11)
AT2G16190.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G16050.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G16130.1	protein_coding	polyol/monosaccharide transporter 2		polyol/monosaccharide transporter 2;(source:Araport11)
AT2G16200.1	protein_coding	structural molecules		structural molecule;(source:Araport11)
AT2G16060.1	protein_coding	hemoglobin 1	Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity.  It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.  Overexpression impairs cold stress-induced nitric oxide (NO) production.	hemoglobin 1;(source:Araport11)
AT2G16140.1	transposable_element_gene	transposable element gene		None;(source:Araport11)
AT2G16210.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT2G16070.1	protein_coding	plastid division2	An integral outer envelope membrane protein (its homolog in A thaliana PDV1), component of the plastid division machinery. Similar to ARC6, PDV2 localizes to a continuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site.	plastid division2;(source:Araport11)
AT2G16150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-84 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G16220.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G16010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07630.1);(source:TAIR10)
AT2G10310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-31 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.3e-05 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.3e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G21240.1	protein_coding	basic pentacysteine 4	Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.	basic pentacysteine 4;(source:Araport11)
AT2G18190.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G18180.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT2G18170.1	protein_coding	MAP kinase 7		MAP kinase 7;(source:Araport11)
AT2G18160.1	protein_coding	basic leucine-zipper 2	Encodes a b-ZIP transcription factor.	basic leucine-zipper 2;(source:Araport11)
AT2G18150.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G18120.1	protein_coding	SHI-related sequence 4	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	SHI-related sequence 4;(source:Araport11)
AT2G18140.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G18130.1	protein_coding	purple acid phosphatase 11		purple acid phosphatase 11;(source:Araport11)
AT2G18100.1	protein_coding	Protein of unknown function (DUF726)		transmembrane/coiled-coil protein (DUF726);(source:Araport11)
AT2G28810.1	protein_coding	Dof-type zinc finger DNA-binding family protein		Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT2G28900.1	protein_coding	outer plastid envelope protein 16-1	Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A.  Predominantly expressed in leaves and is also inducible by cold treatment.	outer plastid envelope protein 16-1;(source:Araport11)
AT2G28830.1	protein_coding	PLANT U-BOX 12	Encodes a U-box E3 ubiquitin ligase involved in ubiquitination of pattern recognition receptor FLS2.pub12/pub13 double mutants enhanced chitin-induced ROS production and callose deposition suggesting they function redundantly to negatively regulate immune response to fungal elicitor.	armadillo/beta-catenin repeat protein;(source:Araport11)
AT2G28780.1	protein_coding			P-hydroxybenzoic acid efflux pump subunit;(source:Araport11)
AT2G28840.1	protein_coding	XB3 ortholog 1 in Arabidopsis thaliana		hypothetical protein;(source:Araport11)
AT2G28910.1	protein_coding	CAX interacting protein 4	Encodes a CAX-interacting protein (CXIP4). The gene product is located in the nucleus of GFP-CXIP4-expressing yeast cells. When transiently expressed in the tobacco leaves, GFP-CXIP4 locates to the nucleus as well as in discrete areas of the cytoplasm (which do not overlap with mitochondria).	CAX interacting protein 4;(source:Araport11)
AT2G28790.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT2G28850.1	protein_coding	cytochrome P450, family 710, subfamily A, polypeptide 3	member of CYP710A	cytochrome P450, family 710, subfamily A, polypeptide 3;(source:Araport11)
AT2G28920.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G28800.1	protein_coding	63 kDa inner membrane family protein	member of Chloroplast membrane protein ALBINO3 family. Similar to pea PPF1 and may play a role in plant senescence.	63 kDa inner membrane family protein;(source:Araport11)
AT2G28860.1	protein_coding	cytochrome P450, family 710, subfamily A, polypeptide 4	member of CYP710A	cytochrome P450, family 710, subfamily A, polypeptide 4;(source:Araport11)
AT2G28870.1	protein_coding			cyclin-dependent kinase inhibitor SMR1-like protein;(source:Araport11)
AT2G28880.1	protein_coding	para-aminobenzoate (PABA) synthase family protein	ADCS encodes a protein that has two functional domains. The N-terminal domain has glutamine amidotransferase activity while the C-terminal domain has aminodeoxychorismate synthase (ADCS) activity. These two domains act together to catalyze the transformation of chorismate to 4-amino-4-deoxychorismate. This reaction is required for 4-aminobenzoate (pABA) production and ultimately for folate biosynthesis. The putative target peptide of ADCS can direct GFP to the chloroplast.	para-aminobenzoate (PABA) synthase family protein;(source:Araport11)
AT2G28890.1	protein_coding	poltergeist like 4	Encodes a protein phosphatase 2C  like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves.	poltergeist like 4;(source:Araport11)
AT2G28750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase,  blastp match of 27%25 identity and 1.8e-07 P-value to GP|14018103|gb|AAK52166.1|AC084831_20|AC084831 putative reverse transcriptase {Oryza sativa};(source:TAIR10)
AT2G28760.1	protein_coding	UDP-XYL synthase 6		UDP-XYL synthase 6;(source:Araport11)
AT2G07620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, very low similarity to SP|Q9UUA2 DNA repair and recombination protein pif1, mitochondrial precursor {Schizosaccharomyces pombe};(source:TAIR10)
AT2G07600.1	pseudogene			pseudogene of NADH-Ubiquinone oxidoreductase (complex I);(source:Araport11)
AT2G07530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.4e-17 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G07520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1);(source:TAIR10)
AT2G07590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G07580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G07570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-16 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G07560.1	protein_coding	H(+)-ATPase 6		H[+]-ATPase 6;(source:Araport11)
AT2G07550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.7e-313 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G07540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.8e-90 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT2G07630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31990.1);(source:TAIR10)
AT2G14070.1	protein_coding	wound-responsive protein-related		wound-responsive protein-like protein;(source:Araport11)
AT2G13990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.6e-297 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G14000.1	protein_coding	Arabidopsis retrotransposon ORF-1 protein		retrotransposon ORF-1 protein;(source:Araport11)
AT2G14010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1);(source:TAIR10)
AT2G14020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44880.1);(source:TAIR10)
AT2G14030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.1e-78 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G13940.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.4e-197 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT2G14040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.0e-99 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT2G13950.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G14050.1	protein_coding	minichromosome maintenance 9		minichromosome maintenance 9;(source:Araport11)
AT2G13960.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT2G14060.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G13970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.1e-39 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G13980.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G36130.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT2G36170.1	protein_coding	Ubiquitin supergroup;Ribosomal protein L40e		60S ribosomal protein L40-1;(source:Araport11)
AT2G36160.1	protein_coding	Ribosomal protein S11 family protein		Ribosomal protein S11 family protein;(source:Araport11)
AT2G36090.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G36100.1	protein_coding	Uncharacterised protein family (UPF0497)	Encodes a membrane bound protein involved in formation of the casparian strip. Along with CASP 2 it is required for the localization of ESB1.	Uncharacterized protein family (UPF0497);(source:Araport11)
AT2G36110.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G36120.1	protein_coding	Glycine-rich protein family	Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects. The mRNA is cell-to-cell mobile.	Glycine-rich protein family;(source:Araport11)
AT2G15550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16410.1);(source:TAIR10)
AT2G15630.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G15640.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G15720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.4e-35 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT2G15560.1	protein_coding	Putative endonuclease or glycosyl hydrolase	Putative endonuclease	Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT2G15570.1	protein_coding	Thioredoxin superfamily protein	chloroplast protein similar to prokaryotic thioredoxin.	Thioredoxin superfamily protein;(source:Araport11)
AT2G15730.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G15580.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G15650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.0e-227 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT2G15520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT3G24680.1);(source:TAIR10)
AT2G15740.1	protein_coding	C2H2-like zinc finger protein	Member of a small family of zinc finger containing putative transcription factors.Similar to GAZ.	C2H2-like zinc finger protein;(source:Araport11)
AT2G15590.1	protein_coding	Protein of unknown function (DUF1685)		spire, putative (DUF1685);(source:Araport11)
AT2G15660.1	protein_coding	AGAMOUS-like 95		AGAMOUS-like 95;(source:Araport11)
AT2G15530.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G15480.1	protein_coding	UDP-glucosyl transferase 73B5		UDP-glucosyl transferase 73B5;(source:Araport11)
AT2G15600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41505.1);(source:TAIR10)
AT2G15670.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G15540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.7e-33 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G15750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06845.1);(source:TAIR10)
AT2G15610.1	protein_coding	Protein of unknown function (DUF1685)		hypothetical protein (DUF1685);(source:Araport11)
AT2G15680.1	protein_coding	Calcium-binding EF-hand family protein	Encodes a calmodulin-like protein.	Calcium-binding EF-hand family protein;(source:Araport11)
AT2G15620.1	protein_coding	nitrite reductase 1	Involved in the second step of nitrate assimilation.  Its expression is induced by nitrate. The mRNA is cell-to-cell mobile.	nitrite reductase 1;(source:Araport11)
AT2G15690.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes an atypical PPR-DYW protein containing five predicted PPR domains and a C-terminal DYW domain separated by an amino acid sequence that do not clearly correspond to an E domain.  It is expressed in both the mitochondrion and chloroplast and is also involved in RNA editing in the mitochondrion and chloroplast as a core member of E+-type PPR editosomes.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G15700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.4e-308 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G15490.1	protein_coding	UDP-glycosyltransferase 73B4		UDP-glycosyltransferase 73B4;(source:Araport11)
AT2G15710.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G15500.1	protein_coding	RNA-binding protein		RNA-binding protein;(source:Araport11)
AT2G15510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.0e-20 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G43040.1	protein_coding	tetratricopeptide repeat (TPR)-containing protein	encodes a calmodulin-binding protein that is expressed specifically in pollen and is required for pollen development.	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT2G43030.1	protein_coding	Ribosomal protein L3 family protein		Ribosomal protein L3 family protein;(source:Araport11)
AT2G43060.1	protein_coding	ILI1 binding bHLH 1		ILI1 binding bHLH 1;(source:Araport11)
AT2G43020.1	protein_coding	polyamine oxidase 2	Encodes a polyamine oxidase.	polyamine oxidase 2;(source:Araport11)
AT2G43050.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT2G43010.1	protein_coding	phytochrome interacting factor 4	Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized  bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.Involved in the regulation of response to nutrient levels.	phytochrome interacting factor 4;(source:Araport11)
AT2G42290.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G42470.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G42380.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G42300.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G42390.1	protein_coding	protein kinase C substrate, heavy chain-related		kinase C substrate, heavy chain-like protein;(source:Araport11)
AT2G42350.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G42480.1	protein_coding	TRAF-like family protein		MATH domain/coiled-coil protein;(source:Araport11)
AT2G42400.1	protein_coding	vascular plant one zinc finger protein 2	VOZ transcription factor which acts as positive regulator of several salt-responsive genes. Functionally redundant in salt stress with VOZ1.	vascular plant one zinc finger protein 2;(source:Araport11)
AT2G42360.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G42410.1	protein_coding	zinc finger protein 11	Encodes a zinc finger protein ZFP11.  Overexpression of ZFP11 causes mortality and a deformed phenotype.	zinc finger protein 11;(source:Araport11)
AT2G42370.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G42430.1	protein_coding	lateral organ boundaries-domain 16	LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE). Regluates lateral root formation.	lateral organ boundaries-domain 16;(source:Araport11)
AT2G42440.1	protein_coding	Lateral organ boundaries (LOB) domain family protein		Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT2G42450.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G42310.1	protein_coding			ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) protein;(source:Araport11)
AT2G42460.1	protein_coding	TRAF-like family protein		MATH domain/coiled-coil protein;(source:Araport11)
AT2G42320.1	protein_coding	nucleolar protein gar2-related		nucleolar protein gar2-like protein;(source:Araport11)
AT2G42330.1	protein_coding	GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain		GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein;(source:Araport11)
AT2G42340.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G17540.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G17550.1	protein_coding			RB1-inducible coiled-coil protein;(source:Araport11)
AT2G17560.1	protein_coding	high mobility group B4	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.	high mobility group B4;(source:Araport11)
AT2G17490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.3e-199 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT2G17570.1	protein_coding	Undecaprenyl pyrophosphate synthetase family protein		Undecaprenyl pyrophosphate synthetase family protein;(source:Araport11)
AT2G17500.1	protein_coding	Auxin efflux carrier family protein		Auxin efflux carrier family protein;(source:Araport11)
AT2G17580.1	protein_coding	Polynucleotide adenylyltransferase family protein	Encodes a bacterial-type poly(A) polymerase, AGS1.	Polynucleotide adenylyltransferase family protein;(source:Araport11)
AT2G17510.1	protein_coding	ribonuclease II family protein		ribonuclease II family protein;(source:Araport11)
AT2G17590.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G17520.1	protein_coding	Endoribonuclease/protein kinase IRE1-like	Encodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. The transcript levels for several ER-stress responsive genes, including six protein disulfide isomerases (PDIs), BiP2, and AtbZIP60 are not affected in ire1-2 null mutants. The mRNA is cell-to-cell mobile.	Endoribonuclease/protein kinase IRE1-like protein;(source:Araport11)
AT2G17600.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G17530.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G17610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.6e-21 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT2G18800.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 21		xyloglucan endotransglucosylase/hydrolase 21;(source:Araport11)
AT2G18720.1	protein_coding	Translation elongation factor EF1A/initiation factor IF2gamma family protein		Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT2G18730.1	protein_coding	diacylglycerol kinase 3		diacylglycerol kinase 3;(source:Araport11)
AT2G18660.1	protein_coding	plant natriuretic peptide A	Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space.  Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein. It is stress responsive and can enhance its own expression.	plant natriuretic peptide A;(source:Araport11)
AT2G18740.1	protein_coding	Small nuclear ribonucleoprotein family protein	Putative temperature-specific splice regulator of development. Only the first splice form (PCP-alpha) has this function as result of C-terminal addition.	Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT2G18670.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G18750.1	protein_coding	Calmodulin-binding protein		Calmodulin-binding protein;(source:Araport11)
AT2G18680.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G18760.1	protein_coding	chromatin remodeling 8		chromatin remodeling 8;(source:Araport11)
AT2G18690.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G18770.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G18700.1	protein_coding	trehalose phosphatase/synthase 11	Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	trehalose phosphatase/synthase 11;(source:Araport11)
AT2G18780.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G18710.1	protein_coding	SECY homolog 1	Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid.	SECY homolog 1;(source:Araport11)
AT2G18790.1	protein_coding	phytochrome B	Red/far-red photoreceptor involved in the regulation of de-etiolation. Exists in two inter-convertible forms: Pr and Pfr (active). Involved in the light-promotion of seed germination and in the shade avoidance response. Promotes seedling etiolation in both the presence and absence of phytochrome A. Overexpression results in etiolation under far-red light. Accumulates in the nucleus after exposure to far red light. The phosphorylation state of the Ser-86 residue of the phytochrome B molecule alters dark reversion of the molecule. The mRNA is cell-to-cell mobile.	phytochrome B;(source:Araport11)
AT2G18650.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G13470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.6e-14 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G13640.1	protein_coding	Transcription factor IIS family protein		Transcription factor IIS family protein;(source:Araport11)
AT2G13560.1	protein_coding	NAD-dependent malic enzyme 1	Encodes an NAD-dependent malic enzyme (NAD-ME) that does not act on oxaloacetate, indicating that it belongs to EC 1.1.1.39. It is a member of the alpha family of NAD-MEs in plants. It appears to function as a homodimer or as a heterodimer with the beta-type NAD-ME2 (At4g00570). NAD-ME1 transcript and protein levels are higher during the night than during the day. The mRNA is cell-to-cell mobile.	NAD-dependent malic enzyme 1;(source:Araport11)
AT2G13650.1	protein_coding	golgi nucleotide sugar transporter 1	Encodes a Golgi-localized GDP-mannose transporter.  It can transport ADP-glucose in vitro.	golgi nucleotide sugar transporter 1;(source:Araport11)
AT2G13570.1	protein_coding	nuclear factor Y, subunit B7		nuclear factor Y, subunit B7;(source:Araport11)
AT2G13510.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT2G13580.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT2G13480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to GB:AAA75253;(source:TAIR10)
AT2G13520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.2e-27 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT2G13590.1	pseudogene			pseudogene of Ta11-like non-LTR retrotransposon;(source:Araport11)
AT2G13530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G13600.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes a pentatricopeptide repeat protein belonging to the E+ subclass of the P-L-S subfamily. It is localized to the mitochondrion, affects several RNA editing sites, and is required for carbon energy balance in Arabidopsis by maintaining the abundance and/or activity of complexes I, III and IV of the mitochondrial electron transport chain.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G13540.1	protein_coding	ARM repeat superfamily protein	Encodes a nuclear cap-binding protein that forms a heterodimeric complex with CBP20 and is involved in ABA signaling and flowering. Mutants are early flowering and exhibit hypersensitive response to ABA in germination inhibition.Loss of ABH1 function results in abnormal processing of mRNAs for several important floral regulators (FLC, CO, FLM). Analysis of loss of function mutations suggests a role in pri-miRNA processing and mRNA splicing. Note that two different mutant alleles were given the same name abh1-7 (Kuhn et al 2007; Kim et al 2008).  To avoid confusion, abh1-7 described in Kim et al (2008) has been renamed abh1-107 (other names: ensalada-1, ens-1).	ARM repeat superfamily protein;(source:Araport11)
AT2G13610.1	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT2G13550.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G13620.1	protein_coding	cation/hydrogen exchanger 15	member of Putative Na+/H+ antiporter family	cation/hydrogen exchanger 15;(source:Araport11)
AT2G13630.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G13490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.3e-19 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G13500.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT2G12280.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G12200.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G12210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G12290.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G12300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.8e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G12110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42590.1);(source:TAIR10)
AT2G12230.1	pseudogene			pseudogene of P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G12240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.6e-45 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G12320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32169.1);(source:TAIR10)
AT2G12250.1	transposable_element_gene	transposable element gene	similarity to En/Spm-like transposon protein	transposable_element_gene;(source:Araport11);pseudogene, expressed protein;(source:TAIR10)
AT2G12060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287;(source:TAIR10)
AT2G12260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 4.9e-150 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT2G12270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase,  blastp match of 27%25 identity and 6.7e-40 P-value to GP|21686921|gb|AAK71569.2|AC087852_29|AC087852 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G41720.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a pentatricopeptide repeat protein that is essential for trans-splicing of a chloroplast small ribosomal subunit transcript.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G41800.1	protein_coding	Protein of unknown function, DUF642	Encodes a DUF642 cell wall protein that is highly induced during the M/G1 phases of the cell cycle and is involved in hypocotyl cell elongation.	imidazolonepropionase (Protein of unknown function, DUF642);(source:Araport11)
AT2G41710.1	protein_coding	Integrase-type DNA-binding superfamily protein		Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G41790.1	protein_coding	Insulinase (Peptidase family M16) family protein		Insulinase (Peptidase family M16) family protein;(source:Araport11)
AT2G41810.1	protein_coding	Protein of unknown function, DUF642		imidazolonepropionase (Protein of unknown function, DUF642);(source:Araport11)
AT2G41780.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G41770.1	protein_coding	Protein of unknown function (DUF288)	Regulates the assembly and trafficking of cellulose synthase complexes.	transmembrane protein, putative (DUF288);(source:Araport11)
AT2G41760.1	protein_coding		Controls the expression of specific defence-response genes, activates the synthesis pathway for the phytoalexin camalexin and influences basal resistance to Pseudomonas syringae pv tomato (Pst).	amino-terminal glutamine amidohydrolase;(source:Araport11)
AT2G41750.1	protein_coding	DTW domain-containing protein		DTW domain-containing protein;(source:Araport11)
AT2G41850.1	protein_coding	polygalacturonase abscission zone A. thaliana	ADPG2.	polygalacturonase ADPG2-like protein;(source:Araport11)
AT2G41740.1	protein_coding	villin 2	Encodes a protein with high homology to animal villin.	villin 2;(source:Araport11)
AT2G41840.1	protein_coding	Ribosomal protein S5 family protein		Ribosomal protein S5 family protein;(source:Araport11)
AT2G41730.1	protein_coding		Expression in rosette leaves is activated by high concentration of boron.	calcium-binding site protein;(source:Araport11)
AT2G41830.1	protein_coding	Uncharacterized protein		Uncharacterized protein;(source:Araport11)
AT2G41820.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G30660.1	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT2G30760.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G30670.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G30770.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 13	putative cytochrome P450	cytochrome P450 family 71 polypeptide;(source:Araport11)
AT2G30680.1	protein_coding			callose synthase-like protein;(source:Araport11)
AT2G30780.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G30690.1	protein_coding	Protein of unknown function, DUF593		lateral signaling target-like protein (Protein of unknown function, DUF593);(source:Araport11)
AT2G30700.1	protein_coding			GPI-anchored protein;(source:Araport11)
AT2G30710.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G30790.1	protein_coding	photosystem II subunit P-2	Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.	photosystem II subunit P-2;(source:Araport11)
AT2G30720.1	protein_coding	Thioesterase/thiol ester dehydrase-isomerase superfamily protein		Thioesterase/thiol ester dehydrase-isomerase superfamily protein;(source:Araport11)
AT2G30730.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G30740.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G30750.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 12	putative cytochrome P450	cytochrome P450 family 71 polypeptide;(source:Araport11)
AT2G30650.1	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT2G28710.1	protein_coding	C2H2-type zinc finger family protein		C2H2-type zinc finger family protein;(source:Araport11)
AT2G28720.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT2G06500.1	protein_coding	hAT family dimerisation domain		hAT family dimerization domain-containing protein;(source:Araport11)
AT2G06510.1	protein_coding	replication protein A 1A	Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I.	replication protein A 1A;(source:Araport11)
AT2G06520.1	protein_coding	photosystem II subunit X	Encodes a protein with sequence similarity to the spinach photosystem II subunit PsbX.	photosystem II subunit X;(source:Araport11)
AT2G06460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to B1129H01.3,  blastp match of 57%25 identity and 1.1e-68 P-value to GP|20161194|dbj|BAB90121.1||AP003370 B1129H01.3 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G06560.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.8e-38 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G06530.1	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT2G06470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G06570.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G06540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.6e-42 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G06580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-22 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G06590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.2e-69 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G06600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.2e-73 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G06480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT2G06610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06690.1);(source:TAIR10)
AT2G06490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 7.5e-83 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G07750.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT2G07760.1	protein_coding	Zinc knuckle (CCHC-type) family protein		Zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT2G07690.1	protein_coding	Minichromosome maintenance (MCM2/3/5) family protein	Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and  endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the  cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.	Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT2G07770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15600.1);(source:TAIR10)
AT2G07780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.5e-32 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G07700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.7e-21 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi);(source:TAIR10)
AT2G07710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32410.2);(source:TAIR10)
AT2G07720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-59 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G07730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.0e-32 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G07740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1);(source:TAIR10)
AT2G20510.1	protein_coding	translocase inner membrane subunit 44-1	One of two loci encoding the TIM44 subunit of the mitochondrial inner membrane translocase complex. TIM44 subunit is the part of the complex that hydrolyzes ATP to provide energy for protein translocation to the inner membrane.	translocase inner membrane subunit 44-1;(source:Araport11)
AT2G20450.1	protein_coding	Ribosomal protein L14		Ribosomal protein L14;(source:Araport11)
AT2G20520.1	protein_coding	FASCICLIN-like arabinogalactan 6	fasciclin-like arabinogalactan-protein 6 (Fla6). Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan 6;(source:Araport11)
AT2G20460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G20530.1	protein_coding	prohibitin 6		prohibitin 6;(source:Araport11)
AT2G20470.1	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein		AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT2G20540.1	protein_coding	mitochondrial editing factor  21	Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.	mitochondrial editing factor 21;(source:Araport11)
AT2G20480.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G20550.1	protein_coding	HSP40/DnaJ peptide-binding protein		HSP40/DnaJ peptide-binding protein;(source:Araport11)
AT2G20490.1	protein_coding	nucleolar RNA-binding Nop10p family protein		nucleolar RNA-binding Nop10p family protein;(source:Araport11)
AT2G20560.1	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT2G20500.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07240.1	protein_coding	cysteine-type peptidases;cysteine-type peptidases		cysteine-type peptidase;(source:Araport11)
AT2G07330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.9e-87 P-value blast match to Q9ZQK9 /304-464 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G07410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-118 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT2G07340.1	protein_coding	PREFOLDIN 1		PREFOLDIN 1;(source:Araport11)
AT2G07420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.1e-170 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT2G07300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1);(source:TAIR10)
AT2G07250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-76 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G07310.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07360.1	protein_coding	SH3 domain-containing protein	TPLATE-associated SH3 domain containing protein.	SH3 domain-containing protein;(source:Araport11)
AT2G07430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.0e-125 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G07320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37880.1);(source:TAIR10)
AT2G07440.1	protein_coding	two-component responsive regulator-related / response regulator protein-related		two-component responsive regulator-related / response regulator protein-like protein;(source:Araport11)
AT2G07380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.0e-62 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G07450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.1e-223 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G07390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30470.1);(source:TAIR10)
AT2G07260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1);(source:TAIR10)
AT2G07400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.9e-53 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G07270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G07280.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07290.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G44980.1	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein		SNF2 domain-containing protein / helicase domain-containing protein;(source:Araport11)
AT2G44890.1	protein_coding	cytochrome P450, family 704, subfamily A, polypeptide 1	member of CYP704A	cytochrome P450, family 704, subfamily A, polypeptide 1;(source:Araport11)
AT2G44880.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT2G44870.1	protein_coding			replicase polyprotein 1ab protein;(source:Araport11)
AT2G44860.1	protein_coding	Ribosomal protein L24e family protein		Ribosomal protein L24e family protein;(source:Araport11)
AT2G44850.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G44840.1	protein_coding	ethylene-responsive element binding factor 13	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. The mRNA is cell-to-cell mobile.	ethylene-responsive element binding factor 13;(source:Araport11)
AT2G44930.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT2G44830.1	protein_coding	Protein kinase superfamily protein	AGCVIII kinase involved in the pulse-induced first positive phototropism. Plasma-membrane-associated element of a molecular rheostat that modulates auxin flux through developing protophloem sieve elements (PPSEs) while interacting with BRX, thereby timing PPSE differentiation. Activates PIN-mediated auxin efflux.	Protein kinase superfamily protein;(source:Araport11)
AT2G44920.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a pentapeptide-repeat protein (PRP) composed of 25 repeats capped by N- and C-terminal a-helices. Unlike other PRPs, At2g44920 consists exclusively of type II b-turns	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G44910.1	protein_coding	homeobox-leucine zipper protein 4	Encodes a homeodomain protein whose expression  displays a dependence on phyB for both red and far-red light response.  Also involved in the shade avoidance syndrome.	homeobox-leucine zipper protein 4;(source:Araport11)
AT2G44900.1	protein_coding	ARABIDILLO-1	ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings.	ARABIDILLO-1;(source:Araport11)
AT2G11110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.4e-110 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G11120.1	transposable_element_gene	transposable element gene	similarity to putative Athila retroelement ORF1 protein	transposable_element_gene;(source:Araport11);pseudogene, expressed protein;(source:TAIR10)
AT2G11200.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G11130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.0e-35 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT2G11210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-93 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G11140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.0e-71 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G11220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.5e-16 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT2G11150.1	transposable_element_gene	transposable element gene	pseudogene of putative replication protein A1	transposable_element_gene;(source:Araport11);pseudogene, expressed protein;(source:TAIR10)
AT2G11230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.9e-61 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G11240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.1e-38 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G11170.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G11180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.9e-49 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G11190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.5e-90 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G14520.1	protein_coding	CBS domain-containing protein with a domain of unknown function (DUF21)		CBS domain protein (DUF21);(source:Araport11)
AT2G14440.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G14510.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G14430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.5e-45 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT2G14550.1	pseudogene			pseudogene of RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G14500.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G14540.1	protein_coding	serpin 2		serpin 2;(source:Araport11)
AT2G14490.1	pseudogene			pseudogene of Calcium-dependent ARF-type GTPase activating protein family;(source:Araport11)
AT2G14420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.4e-10 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G14530.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 13	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 13;(source:Araport11)
AT2G14410.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT2G14470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, low similarity to SP|Q9UUA2 DNA repair and recombination protein pif1, mitochondrial precursor {Schizosaccharomyces pombe};(source:TAIR10)
AT2G14400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.4e-191 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT2G14460.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G14450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1);(source:TAIR10)
AT2G14570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48290.1);(source:TAIR10)
AT2G14560.1	protein_coding	Protein of unknown function (DUF567)	Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica.  LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5. The mRNA is cell-to-cell mobile.	LURP-one-like protein (DUF567);(source:Araport11)
AT2G06780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.8e-17 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G06720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.5e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G06770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.7e-15 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G06710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.4e-38 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT2G06700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12130.1);(source:TAIR10)
AT2G06750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28480.1);(source:TAIR10)
AT2G06690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45080.1);(source:TAIR10)
AT2G06680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.2e-67 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G06810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative non-LTR retroelement reverse transcriptase,  blastp match of 33%25 identity and 3.5e-10 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G06670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.2e-89 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G06800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.5e-40 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G06790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 3.4e-84 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT2G06660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mariner-like transposase family, has a 2.3e-43 P-value blast match to GB:S20478 hypothetical protein (Mariner_Tc1-element) (Drosophila melanogaster);(source:TAIR10)
AT2G06740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.6e-145 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT2G06650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.0e-19 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G09820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.6e-138 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G09830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.3e-295 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G09840.1	protein_coding			nucleic acid/zinc ion-binding protein;(source:Araport11)
AT2G09850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.4e-23 P-value blast match to aF19N02 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT2G09860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.1e-47 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT2G09790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.3e-20 P-value blast match to F6H8 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT2G09800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.8e-162 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT2G09810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase,  blastp match of 50%25 identity and 1.2e-22 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G34070.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 37	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 37;(source:Araport11)
AT2G33990.1	protein_coding	IQ-domain 9	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 9;(source:Araport11)
AT2G34000.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G34080.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT2G34170.1	protein_coding	Protein of unknown function (DUF688)		hypothetical protein (DUF688);(source:Araport11)
AT2G34010.1	protein_coding			verprolin;(source:Araport11)
AT2G34090.1	protein_coding	maternal effect embryo arrest 18		maternal effect embryo arrest 18;(source:Araport11)
AT2G34020.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT2G34100.1	protein_coding			nonsense-mediated mRNA decay-like protein;(source:Araport11)
AT2G34030.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT2G34110.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G34040.1	protein_coding	Apoptosis inhibitory protein 5 (API5)		Apoptosis inhibitory protein 5 (API5);(source:Araport11)
AT2G34120.1	protein_coding	Cytochrome C oxidase polypeptide VIB family protein		Cytochrome C oxidase polypeptide VIB family protein;(source:Araport11)
AT2G34050.1	protein_coding			ATP synthase F1 complex assembly factor;(source:Araport11)
AT2G34130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 5.8e-123 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G34060.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G34140.1	protein_coding	Dof-type zinc finger DNA-binding family protein	CDF4 is member of the group II DOF transcription factor family is involved in regulation of differentiation root columella  cells. It is a direct target of the transcriptional repressor WOX5. CDF4 itself is a transcriptional repressor that appears to repress root columella stem cell identity. Ectopic expression of CDF leads to premature differentiation of root columella cells.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT2G34150.1	protein_coding	SCAR family protein	Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT2G34160.1	protein_coding	Alba DNA/RNA-binding protein		Alba DNA/RNA-binding protein;(source:Araport11)
AT2G45170.1	protein_coding	AUTOPHAGY 8E	Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.	AUTOPHAGY 8E;(source:Araport11)
AT2G45090.1	pseudogene			pseudogene of receptor kinase 1;(source:Araport11)
AT2G45000.1	protein_coding	structural constituent of nuclear pore	Encodes a nucleoporin, a component of the nuclear pore complex, that appears to be a major negative regulator of auxin signalling. Loss of function mutants are embryo lethal.	structural constituent of nuclear pore;(source:Araport11)
AT2G45080.1	protein_coding	cyclin p3;1		cyclin p3;(source:Araport11)
AT2G45140.1	protein_coding	plant VAP homolog 12	Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. The mRNA is cell-to-cell mobile.	plant VAP homolog 12;(source:Araport11)
AT2G44990.1	protein_coding	carotenoid cleavage dioxygenase 7	More Axillary Branching; carotenoid cleavage dioxygenases.	carotenoid cleavage dioxygenase 7;(source:Araport11)
AT2G45070.1	protein_coding	Preprotein translocase Sec, Sec61-beta subunit protein	Sec61 Beta Subunit	Preprotein translocase Sec, Sec61-beta subunit protein;(source:Araport11)
AT2G45130.1	protein_coding	SPX domain gene 3	Expression is upregulated in the shoot of cax1/cax3 mutant.	SPX domain protein 3;(source:Araport11)
AT2G45060.1	protein_coding	Uncharacterised conserved protein UCP022280		alanine-tRNA ligase;(source:Araport11)
AT2G45120.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT2G45050.1	protein_coding	GATA transcription factor 2	Encodes a member of the GATA factor family of zinc finger transcription factors.  A positive regulator of photomorphogenesis.	GATA transcription factor 2;(source:Araport11)
AT2G45110.1	protein_coding	expansin B4	member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin B4;(source:Araport11)
AT2G45100.1	protein_coding	Cyclin/Brf1-like TBP-binding protein	Cyclin/Brf1-like TBP-binding protein. Double mutants with BRF2 show defects in pollen development.	Cyclin/Brf1-like TBP-binding protein;(source:Araport11)
AT2G45040.1	protein_coding	Matrixin family protein		Matrixin family protein;(source:Araport11)
AT2G45030.1	protein_coding	Translation elongation factor EFG/EF2 protein		Translation elongation factor EFG/EF2 protein;(source:Araport11)
AT2G45010.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT2G45160.1	protein_coding	GRAS family transcription factor	Belongs to one of the LOM (LOST MERISTEMS) genes: AT2G45160 (LOM1), AT3G60630 (LOM2) and AT4G00150 (LOM3). LOM1 and LOM2 promote cell differentiation at the periphery of shoot meristems and help to maintain their polar organization.	GRAS family transcription factor;(source:Araport11)
AT2G45150.1	protein_coding	cytidinediphosphate diacylglycerol synthase 4		cytidinediphosphate diacylglycerol synthase 4;(source:Araport11)
AT2G10160.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-105 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT2G10210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.0e-209 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G10250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-157 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.3e-151 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10260.1	protein_coding			Ulp1 protease family protein;(source:Araport11)
AT2G10230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, replication protein A1;(source:TAIR10)
AT2G10270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, PIF1 family of mitochondrial helicases;(source:TAIR10)
AT2G10170.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.2e-278 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-294 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.9e-120 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT2G10200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.6e-218 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G15060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 1.8e-63 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT2G14980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-247 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G15070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 8.4e-192 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G15080.1	protein_coding	receptor like protein 19		receptor like protein 19;(source:Araport11)
AT2G14990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 8.7e-37 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G15090.1	protein_coding	3-ketoacyl-CoA synthase 8	Encodes KCS8, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). The mRNA is cell-to-cell mobile.	3-ketoacyl-CoA synthase 8;(source:Araport11)
AT2G15000.1	protein_coding			caspase-6 protein;(source:Araport11)
AT2G15100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.0e-216 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G15010.1	protein_coding	Plant thionin	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	Plant thionin;(source:Araport11)
AT2G15110.1	protein_coding	Protein of unknown function, DUF601		hypothetical protein (Protein of unknown function, DUF601);(source:Araport11)
AT2G15020.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G15120.1	pseudogene			pseudogene of Plant basic secretory protein (BSP) family protein;(source:Araport11)
AT2G15030.1	pseudogene			pseudogene of WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein;(source:Araport11)
AT2G15040.1	pseudogene			pseudogene of receptor like protein 53;(source:Araport11)
AT2G15050.1	protein_coding	lipid transfer protein	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	lipid transfer protein;(source:Araport11)
AT2G31150.1	protein_coding	ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism		ATP binding / ATPase;(source:Araport11)
AT2G31080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.3e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G31140.1	protein_coding	Peptidase S24/S26A/S26B/S26C family protein		Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT2G31070.1	protein_coding	TCP domain protein 10	TCP family protein involved in heterchronic regulation of leaf differentiation.	TCP domain protein 10;(source:Araport11)
AT2G31130.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G31110.1	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT2G31100.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G31090.1	protein_coding		Encodes a signalling peptide influencing lateral organ separation.	transmembrane protein;(source:Araport11)
AT2G31160.1	protein_coding	Protein of unknown function (DUF640)		LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
AT2G22070.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT2G22080.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G22050.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G22060.1	protein_coding			galactose oxidase/kelch repeat protein;(source:Araport11)
AT2G22120.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G22100.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G22090.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G22140.1	protein_coding	essential meiotic endonuclease 1B	Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.	essential meiotic endonuclease 1B;(source:Araport11)
AT2G04210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10070.2);(source:TAIR10)
AT2G04230.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT2G04170.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G04180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.6e-05 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G04190.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G04200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OSJNBa0052O21.25,  blastp match of 34%25 identity and 6.1e-55 P-value to GP|21740476|emb|CAD40040.1||AL606590 OSJNBa0052O21.25 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G39180.1	protein_coding	CRINKLY4 related 2		CRINKLY4 related 2;(source:Araport11)
AT2G39260.1	protein_coding	binding;RNA binding		regulator of nonsense transcripts UPF2;(source:Araport11)
AT2G39170.1	protein_coding			MEF2BNB-like protein;(source:Araport11)
AT2G39250.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ),  share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G39300.1	protein_coding			CAP-gly domain linker;(source:Araport11)
AT2G39340.1	protein_coding	SAC3/GANP/Nin1/mts3/eIF-3 p25 family	Putative mRNA export factor that is highly co-expressed with PRP4KA.	SAC3/GANP/Nin1/mts3/eIF-3 p25 family;(source:Araport11)
AT2G39240.1	protein_coding	RNA polymerase I specific transcription initiation factor RRN3 protein		RNA polymerase I specific transcription initiation factor RRN3 protein;(source:Araport11)
AT2G39290.1	protein_coding	phosphatidylglycerolphosphate synthase 1	Encodes a phosphatidylglycerolphosphate synthase 2C which is dual-targeted into chloroplasts and mitochondria. Mutant plants have mutant chloroplasts but normal mitochondria.	phosphatidylglycerolphosphate synthase 1;(source:Araport11)
AT2G39160.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G39230.1	protein_coding	LATERAL ORGAN JUNCTION	Encodes a pentatricopeptide protein   (LOJ) that is specifically expressed in lateral organ junctions.	LATERAL ORGAN JUNCTION;(source:Araport11)
AT2G39280.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G39220.1	protein_coding	PATATIN-like protein 6		PATATIN-like protein 6;(source:Araport11)
AT2G39270.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G39210.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G39140.1	protein_coding	pseudouridine synthase family protein	Suppressor of var2 variegation phenotype. Chloroplast localized. Loss of function mutant has defects in chloroplast protein translation and rRNA processing. Similar in sequence to pseudouridine synthase proteins.	pseudouridine synthase family protein;(source:Araport11)
AT2G39200.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT2G39190.1	protein_coding	Protein kinase superfamily protein	member of ATH subfamily	Protein kinase superfamily protein;(source:Araport11)
AT2G39330.1	protein_coding	jacalin-related lectin 23		jacalin-related lectin 23;(source:Araport11)
AT2G39320.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT2G39310.1	protein_coding	jacalin-related lectin 22		jacalin-related lectin 22;(source:Araport11)
AT2G02390.1	protein_coding	glutathione S-transferase zeta 1	Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the  oxidant tert-butylhydroperoxide.  It functions in vitro as a maleylacetoacetate isomerase and is likely to be involved in tyrosine catabolism.	glutathione S-transferase zeta 1;(source:Araport11)
AT2G02310.1	protein_coding	phloem protein 2-B6		phloem protein 2-B6;(source:Araport11)
AT2G02400.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G02320.1	protein_coding	phloem protein 2-B7		phloem protein 2-B7;(source:Araport11)
AT2G02240.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G02330.1	pseudogene			pseudogene of phloem protein 2-B7;(source:Araport11)
AT2G02230.1	protein_coding	phloem protein 2-B1		phloem protein 2-B1;(source:Araport11)
AT2G02250.1	protein_coding	phloem protein 2-B2		phloem protein 2-B2;(source:Araport11)
AT2G02340.1	protein_coding	phloem protein 2-B8		phloem protein 2-B8;(source:Araport11)
AT2G02410.1	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT2G02260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G02350.1	protein_coding	SKP1 interacting partner 3	encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber.	SKP1 interacting partner 3;(source:Araport11)
AT2G02270.1	pseudogene			pseudogene of phloem protein 2-B2;(source:Araport11)
AT2G02360.1	protein_coding	phloem protein 2-B10	Encodes an F-box protein containing a Nictaba-related lectin domain that can act as a carbohydrate-binding protein.Expression is induced by SA and pathogenic bacteria.	phloem protein 2-B10;(source:Araport11)
AT2G02430.1	pseudogene			pseudogene of Arginyl-tRNA synthetase;(source:Araport11)
AT2G02280.1	protein_coding	phloem protein 2-B4		phloem protein 2-B4;(source:Araport11)
AT2G02370.1	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT2G02440.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G02290.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G02380.1	protein_coding	glutathione S-transferase (class zeta) 2	Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase (class zeta) 2;(source:Araport11)
AT2G02300.1	protein_coding	phloem protein 2-B5		phloem protein 2-B5;(source:Araport11)
AT2G02470.1	protein_coding	alfin-like 6	Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins that acts as  a novel upstream regulator of root hair formation during Pi starvation. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 6;(source:Araport11)
AT2G10820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.8e-34 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT2G10810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-39 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.9e-92 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT2G10790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G10770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.8e-118 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT2G10760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.5e-285 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G10840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to At5g35280, At2g10500, At2g05860, At4g07310, At4g07430, At1g39270;(source:TAIR10)
AT2G10830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G13060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.1e-175 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT2G13130.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G13070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12520.1);(source:TAIR10)
AT2G13140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase,  blastp match of 37%25 identity and 2.7e-49 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G13080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.7e-183 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT2G13150.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G13090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.6e-28 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G13160.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-126 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G13100.1	protein_coding	Major facilitator superfamily protein	Encodes a member of the phosphate starvation-induced glycerol-3-phosphate permease gene family: AT3G47420(G3Pp1), AT4G25220(G3Pp2), AT1G30560(G3Pp3), AT4G17550(G3Pp4) and AT2G13100(G3Pp5). The mRNA is cell-to-cell mobile.	Major facilitator superfamily protein;(source:Araport11)
AT2G13040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to GP:4388719;(source:TAIR10)
AT2G13110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.6e-102 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G13050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to GP:3377830;(source:TAIR10)
AT2G13120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.1e-109 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT2G05800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.1e-19 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G05810.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT2G28450.1	protein_coding	zinc finger (CCCH-type) family protein		zinc finger (CCCH-type) family protein;(source:Araport11)
AT2G28480.1	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain protein		RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT2G28540.1	protein_coding	RNA binding (RRM/RBD/RNP motifs) family protein		RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G28490.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT2G28550.1	protein_coding	related to AP2.7		related to AP2.7;(source:Araport11)
AT2G28500.1	protein_coding	LOB domain-containing protein 11		LOB domain-containing protein 11;(source:Araport11)
AT2G28560.1	protein_coding	DNA repair (Rad51) family protein	Encodes a protein of the RAD51B family involved in double stranded DNA repair. Homozygous mutant plants show increased sensitivity to mitomycin which induces DS breaks.	DNA repair (Rad51) family protein;(source:Araport11)
AT2G28510.1	protein_coding	Dof-type zinc finger DNA-binding family protein	DOF transcription factor with a conserved zinc finger (ZF) DNA-binding domain.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT2G28570.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G28520.1	protein_coding	vacuolar proton ATPase A1	Vacuolar proton ATPase subunit VHA-a isoform 1. Localized in the trans-Golgi network. The mRNA is cell-to-cell mobile.	vacuolar proton ATPase A1;(source:Araport11)
AT2G28470.1	protein_coding	beta-galactosidase 8	putative beta-galactosidase (BGAL8 gene)	beta-galactosidase 8;(source:Araport11)
AT2G03080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.4e-10 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT2G03010.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein (DUF577);(source:Araport11)
AT2G03090.1	protein_coding	expansin A15	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A15;(source:Araport11)
AT2G02860.1	protein_coding	sucrose transporter 2	encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.	sucrose transporter 2;(source:Araport11)
AT2G02930.1	protein_coding	glutathione S-transferase F3	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase F3;(source:Araport11)
AT2G03020.1	protein_coding	Heat shock protein HSP20/alpha crystallin family		Heat shock protein HSP20/alpha crystallin family;(source:Araport11)
AT2G02950.1	protein_coding	phytochrome kinase substrate 1	Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state.  PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner.  It is postulated to be a negative regulator of phyB signalling.	phytochrome kinase substrate 1;(source:Araport11)
AT2G02870.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G02960.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G03030.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT2G02880.1	protein_coding	mucin-related		mucin-like protein;(source:Araport11)
AT2G02970.1	protein_coding	GDA1/CD39 nucleoside phosphatase family protein	Encodes a putative apyrase involved in pollen exine pattern formation and anther dehiscence.	GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11)
AT2G03040.1	protein_coding	emp24/gp25L/p24 family/GOLD family protein		emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT2G02890.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G02980.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes a chloroplast RNA editing factor.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G03050.1	protein_coding	Mitochondrial transcription termination factor family protein	A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT2G02910.1	protein_coding	Protein of unknown function (DUF616)		transmembrane protein (DUF616);(source:Araport11)
AT2G02990.1	protein_coding	ribonuclease 1	Encodes a member of the ribonuclease T2 family that responds to inorganic phosphate starvation, and inhibits production of anthocyanin.  Also involved in wound-induced signaling independent of jasmonic acid. Its expression is responsive to both phosphate (Pi) and phosphite (Phi) in roots.	ribonuclease 1;(source:Araport11)
AT2G03060.1	protein_coding	AGAMOUS-like 30	Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.	AGAMOUS-like 30;(source:Araport11)
AT2G03000.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G03070.1	protein_coding	mediator subunit 8	Encodes a subunit of the Mediator complex.  Regulates plant defense and flowering.	mediator subunit 8;(source:Araport11)
AT2G03880.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G03890.1	protein_coding	phosphoinositide 4-kinase gamma 7	Phosphoinositide  kinase which undergo autophosphorylation and phosphorylate serine/threonine  residues of protein substrates. Contains phosphoinositide 3/4-kinase and ubiquitin-like domains. The mRNA is cell-to-cell mobile.	phosphoinositide 4-kinase gamma 7;(source:Araport11)
AT2G03830.1	protein_coding		Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor;(source:Araport11)
AT2G03840.1	protein_coding	tetraspanin13	TET13 encodes a member of the TETRASPANIN gene family that is expressed in the hypophysis, QC, root stem cells, lateral root primordia and is involved in primary root growth and lateral root development.	tetraspanin13;(source:Araport11)
AT2G03850.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT2G03860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.0e-62 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G03870.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT2G03230.1	protein_coding	GCK domain-containing protein		GCK domain-containing protein;(source:Araport11)
AT2G03150.1	protein_coding	ATP/GTP-binding protein family	Encodes a nuclear-localized calcium-binding protein RSA1 (SHORT ROOT IN SALT MEDIUM 1), which is required for salt tolerance.	ATP/GTP-binding protein family;(source:Araport11)
AT2G03220.1	protein_coding	fucosyltransferase 1	member of Glycosyltransferase Family- 37	fucosyltransferase 1;(source:Araport11)
AT2G03140.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G03210.1	protein_coding	fucosyltransferase 2	member of Glycosyltransferase Family- 37	fucosyltransferase 2;(source:Araport11)
AT2G03260.1	protein_coding	EXS (ERD1/XPR1/SYG1) family protein		EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT2G03200.1	protein_coding	Eukaryotic aspartyl protease family protein	Atypical aspartic protease which modulates lateral root development.	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT2G03130.1	protein_coding	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein		Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein;(source:Araport11)
AT2G03250.1	protein_coding	EXS (ERD1/XPR1/SYG1) family protein		EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT2G03190.1	protein_coding	SKP1-like 16	one of SKP1 homologs. Gene is expressed specifically in the silique.	SKP1-like 16;(source:Araport11)
AT2G03120.1	protein_coding	signal peptide peptidase	homologous to Signal Peptide Peptidases (SPP), required for pollen development and pollen germination. No homozygotes could be recovered from a T-DNA insertion mutant. The mRNA is cell-to-cell mobile.	signal peptide peptidase;(source:Araport11)
AT2G03240.1	protein_coding	EXS (ERD1/XPR1/SYG1) family protein		EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT2G03180.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G03110.1	protein_coding	RNA binding;nucleic acid binding		putative RNA-binding protein;(source:Araport11)
AT2G03170.1	protein_coding	SKP1-like 14		SKP1-like 14;(source:Araport11)
AT2G03100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.2e-225 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G03160.1	protein_coding	SKP1-like 19		SKP1-like 19;(source:Araport11)
AT2G12820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.0e-41 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT2G12810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G12800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.0e-230 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G12780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.6e-27 P-value blast match to F21I2-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT2G12770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.9e-24 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT2G12860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.8e-102 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT2G12760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.3e-303 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G12850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-40 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT2G12840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G12830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G38330.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT2G38410.1	protein_coding	ENTH/VHS/GAT family protein		ENTH/VHS/GAT family protein;(source:Araport11)
AT2G38320.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 34	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).TBL34 are required only for xylan 3-O-monoacetylation and 2,3-di-O-acetylation. This biochemical phenotype can be observed in tbl34 esk1, double mutant and tbl34 tbl35 esk1 triple mutants.	TRICHOME BIREFRINGENCE-LIKE 34;(source:Araport11)
AT2G38400.1	protein_coding	alanine:glyoxylate aminotransferase 3	alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA,	alanine:glyoxylate aminotransferase 3;(source:Araport11)
AT2G38440.1	protein_coding	SCAR homolog 2	Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching.   Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype. The mRNA is cell-to-cell mobile.	SCAR homolog 2;(source:Araport11)
AT2G38390.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G38430.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G38310.1	protein_coding	PYR1-like 4	Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2. The mRNA is cell-to-cell mobile.	PYR1-like 4;(source:Araport11)
AT2G38380.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G38420.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G38370.1	protein_coding	Plant protein of unknown function (DUF827)		weak chloroplast movement under blue light protein (DUF827);(source:Araport11)
AT2G38360.1	protein_coding	prenylated RAB acceptor 1.B4		prenylated RAB acceptor 1.B4;(source:Araport11)
AT2G38350.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G38470.1	protein_coding	WRKY DNA-binding protein 33	Member of the plant WRKY transcription factor family.  Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens.  Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.	WRKY DNA-binding protein 33;(source:Araport11)
AT2G38340.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G38460.1	protein_coding	iron regulated 1	Encodes IRON REGULATED1 (IREG1/FPN1), one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.	iron regulated 1;(source:Araport11)
AT2G38450.1	protein_coding			Sel1 repeat protein;(source:Araport11)
AT2G17620.1	protein_coding	Cyclin B2;1		Cyclin B2;(source:Araport11)
AT2G17630.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT2G12970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.2e-259 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT2G12960.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.1e-29 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G12950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 2.9e-105 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT2G12940.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G13010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.0e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G13020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.3e-101 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G13000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 9.0e-151 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT2G12990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 9.4e-25 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT2G12980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.5e-99 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G26070.1	protein_coding	Protein of unknown function (DUF778)	Encodes a predicted membrane protein.  Similar sequences are widely distributed and conserved in plants, animals and protists but absent in fungi and prokaryotes.  The sequence has no known motifs and no biological function has been assigned in any species.  In Arabidopsis, it appears to be involved in the negative regulation of the response to ethylene, is localized to the Golgi and is a positive regulator of ETR1.	protein REVERSION-TO-ETHYLENE SENSITIVITY-like protein (DUF778);(source:Araport11)
AT2G26150.1	protein_coding	heat shock transcription factor A2	member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay.	heat shock transcription factor A2;(source:Araport11)
AT2G25990.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G26060.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a homolog of the yeast Cytosolic Iron-sulfur protein Assembly protein CIA1.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G26140.1	protein_coding	FTSH protease 4	Encodes an FtsH protease that is localized to the mitochondrion. Loss of function results in increased determinacy of the meristem that is exacerbated when plants are grown at higher temperatures.	FTSH protease 4;(source:Araport11)
AT2G25980.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT2G26050.1	protein_coding	Protein of unknown function (DUF1644)		hypothetical protein (DUF1644);(source:Araport11)
AT2G26130.1	protein_coding	RING/U-box protein with C6HC-type zinc finger	Encodes a RING-type zinc finger ubiquitin ligase involved in seed longevity.Gain of function (35S promoter) increases, and loss of function decreases, seed longevity.	RING/U-box protein with C6HC-type zinc finger;(source:Araport11)
AT2G26040.1	protein_coding	PYR1-like 2	Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.	PYR1-like 2;(source:Araport11)
AT2G26120.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT2G26030.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT2G26110.1	protein_coding	Protein of unknown function (DUF761)		bromodomain protein (DUF761);(source:Araport11)
AT2G26020.1	protein_coding	plant defensin 1.2b	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	plant defensin 1.2b;(source:Araport11)
AT2G26100.1	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT2G26010.1	protein_coding	plant defensin 1.3	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	plant defensin 1.3;(source:Araport11)
AT2G26160.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box SKIP23-like protein (DUF295);(source:Araport11)
AT2G26180.1	protein_coding	IQ-domain 6	Transient Expression of Pro35S:YFP-IQD5 in leaves of N. benthamiana alters microtubule organization.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 6;(source:Araport11)
AT2G26080.1	protein_coding	glycine decarboxylase P-protein 2		glycine decarboxylase P-protein 2;(source:Araport11)
AT2G26000.1	protein_coding	zinc finger (C3HC4-type RING finger) family protein	Encodes a RING domain containing protein BRIZ2. BRIZ1 (At2g42160) and BRIZ2 (At2g26000) proteins form a heteromeric E3 ligase complex required for seed germination and post-germination growth.	zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT2G28380.1	protein_coding	dsRNA-binding protein 2	Encodes a cytoplasmic dsRNA-binding protein DRB2.  A maternally expressed imprinted gene. DRB2 and DRB4 have an antagonistic impact on polymerase IV-dependent siRNA levels.	dsRNA-binding protein 2;(source:Araport11)
AT2G28370.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT2G28440.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT2G28360.1	protein_coding	SIT4 phosphatase-associated family protein		SIT4 phosphatase-associated family protein;(source:Araport11)
AT2G28430.1	protein_coding			zinc finger, C3HC4 type family protein;(source:Araport11)
AT2G28350.1	protein_coding	auxin response factor 10	Involved in root cap cell differentiation.	auxin response factor 10;(source:Araport11)
AT2G28420.1	protein_coding	Lactoylglutathione lyase / glyoxalase I family protein	Vicinal oxygen chelate (VOC) superfamily member.	Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT2G28340.1	protein_coding	GATA transcription factor 13	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 13;(source:Araport11)
AT2G28410.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G28330.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G28400.1	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT2G28320.1	protein_coding	Pleckstrin homology (PH) and lipid-binding START domains-containing protein		Pleckstrin homology (PH) and lipid-binding START domains-containing protein;(source:Araport11)
AT2G28390.1	protein_coding	SAND family protein		SAND family protein;(source:Araport11)
AT2G33760.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G33720.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT2G33830.1	protein_coding	Dormancy/auxin associated family protein		Dormancy/auxin associated family protein;(source:Araport11)
AT2G33770.1	protein_coding	phosphate 2	Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response and mediates degradation of PHO1 and PHT1s at endomembrane. Its expression is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots. The mRNA is cell-to-cell mobile.	phosphate 2;(source:Araport11)
AT2G33710.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G33840.1	protein_coding	Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial		Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial;(source:Araport11)
AT2G33790.1	protein_coding	arabinogalactan protein 30	pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family	arabinogalactan protein 30;(source:Araport11)
AT2G33860.1	protein_coding	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related	ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia.  ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top  of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium.  It is a target of the ta-siRNA tasiR-ARF. ETT is also a target of AP2; integrateing the functions of AGAMOUS and APETALA2 in floral meristem determinacy. Positive regulation of drought stress response genes.	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein;(source:Araport11)
AT2G33880.1	protein_coding	homeobox-3	Encodes a protein with similarity to WUS type homeodomain protein. Required for meristem growth and development and acts through positive regulation of WUS. Loss of function phenotypes include embryo lethality, hyponastic cotyledons, reduced root development and smaller meristems. Phenotypes can be rescued by addition of sucrose in the growth media. Overexpression can partially rescue the triple mutant cytokinin receptor phenotype suggesting HB-3 is a downstream effector of cytokinin signaling.	homeobox-3;(source:Araport11)
AT2G33850.1	protein_coding		Stigmatic factor that plays a role during the early post-pollination stages.	E6-like protein;(source:Araport11)
AT2G33870.1	protein_coding	RAB GTPase homolog A1H		RAB GTPase homolog A1H;(source:Araport11)
AT2G33680.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G33700.1	protein_coding	Protein phosphatase 2C family protein	Encodes a putative protein phosphatase 2C that positively regulates salt tolerance in abscisic acid-dependent manner.	Protein phosphatase 2C family protein;(source:Araport11)
AT2G33730.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Homolog of the DEADbox pre-mRNA splicing factor Prp28 which regulates abundance of miRNA. It plays essential roles in miRNA biogenesis and interacts with the DCL1 complex and positively influences pri-miRNA processing. SMA1 binds the promoter region of genes encoding pri-miRNAs (MIRs) and is required for MIR transcription. It enhances the abundance of the DCL1 protein levels through promoting the splicing of the DCL1 pre-mRNAs.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G33800.1	protein_coding	Ribosomal protein S5 family protein	Encodes SCABRA1 (SCA1), a nuclear gene encoding a plastid-type ribosomal protein that functions &#8232;as a structural component of the 70S plastid ribosome. The sca1-rps5 allele exhibits  defects in plastid 16SrRNA processing and a resulting decrease in accumulation of photosynthetic proteins. Loss-of-function mutations enhance the polarity defects of the as2 mutants.	Ribosomal protein S5 family protein;(source:Araport11)
AT2G33740.1	protein_coding	Nitrogen regulatory PII-like, alpha/beta	encodes a copper binding protein that forms tetramers in vitro. Gene is expressed in all tissues examined and protein is localized to the chloroplast. The mRNA is cell-to-cell mobile.	Nitrogen regulatory PII-like, alpha/beta;(source:Araport11)
AT2G33810.1	protein_coding	squamosa promoter binding protein-like 3	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors.  Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change.  Its temporal expression is regulated by the microRNA miR156.  The target site for the microRNA is in the 3'UTR.	squamosa promoter binding protein-like 3;(source:Araport11)
AT2G33690.1	protein_coding	Late embryogenesis abundant protein, group 6		Late embryogenesis abundant protein, group 6;(source:Araport11)
AT2G33750.1	protein_coding	purine permease 2	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 2;(source:Araport11)
AT2G33820.1	protein_coding	Mitochondrial substrate carrier family protein	encodes a mitochondrial ornithine transporter which exports ornithine from the mitochondrion to the cytosol	Mitochondrial substrate carrier family protein;(source:Araport11)
AT2G33780.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT2G26250.1	protein_coding	3-ketoacyl-CoA synthase 10	epidermis-specific, encodes KCS10, a putative 3-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle.	3-ketoacyl-CoA synthase 10;(source:Araport11)
AT2G26270.1	protein_coding			BRCT domain DNA repair protein;(source:Araport11)
AT2G26240.1	protein_coding	Transmembrane proteins 14C		Transmembrane proteins 14C;(source:Araport11)
AT2G26230.1	protein_coding	uricase / urate oxidase / nodulin 35, putative	Encodes a urate oxidase that is involved in peroxisome maintenance.	uricase / urate oxidase / nodulin 35;(source:Araport11)
AT2G26330.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat.  ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina.  Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. ER binds to the peptides STOMAGEN and EPF2 which compete for the same binding site. The ER-EFP2 complex activates MAPK signaling that inhibits stomatal development. ER-STOMAGEN does not activate MAPK signaling. Plants harboring loss of function alleles of er are more susceptible to heat stress than wild type.  In Arabidopsis and other organisms, overexpression of ER confers thermotolerance via as yet undefined mechanisms.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT2G26220.1	pseudogene			pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT2G26320.1	protein_coding	AGAMOUS-like 33		AGAMOUS-like 33;(source:Araport11)
AT2G26210.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT2G26310.1	protein_coding	Chalcone-flavanone isomerase family protein	Encodes a plastid stroma localized fatty acid binding protein.	Chalcone-flavanone isomerase family protein;(source:Araport11)
AT2G26200.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G26300.1	protein_coding	G protein alpha subunit 1	Encodes an alpha subunit of a heterotrimeric GTP-binding protein. The active GTP-bound form of GPA1 binds to the GTG1 and GTG2 abscisic acid (ABA) receptors and appears to affect their GTPase and GTP-binding activity, and hence, ABA binding abilities. GPA1 is a positive regulator in ABA-mediated inhibition of stomatal opening. Plants with recessive mutant alleles have complex phenotypes including: reduced brassinolide response, reduced cell divisions, round leaves, short hypocotyls.  It is likely to be involved in the signaling events that trigger unfolded protein response-associated cell death. GPA1 is also involved in sugar signaling. The mRNA is cell-to-cell mobile.	G protein alpha subunit 1;(source:Araport11)
AT2G26190.1	protein_coding	calmodulin-binding family protein	IQM4 is a plastid localized, Ca2+ independent calmodulin binding protein that is involved in promoting seed dormancy.	calmodulin-binding family protein;(source:Araport11)
AT2G26290.1	protein_coding	root-specific kinase 1		root-specific kinase 1;(source:Araport11)
AT2G26280.1	protein_coding	CTC-interacting domain 7	smr (Small MutS Related) domain-containing protein	CTC-interacting domain 7;(source:Araport11)
AT2G26260.1	protein_coding	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2	Encodes an enzyme with 3&#946;-hydroxysteroid dehydrogenase/C4-decarboxylase activity <i>in vitro</i>. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the <i>Arabidopsis</i> gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound.	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2;(source:Araport11)
AT2G27980.1	protein_coding	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain		Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein;(source:Araport11)
AT2G27900.1	protein_coding			coiled-coil protein;(source:Araport11)
AT2G27970.1	protein_coding	CDK-subunit 2		CDK-subunit 2;(source:Araport11)
AT2G28010.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT2G27960.1	protein_coding	cyclin-dependent kinase-subunit 1	catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle	cyclin-dependent kinase-subunit 1;(source:Araport11)
AT2G28000.1	protein_coding	chaperonin-60alpha	Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding.  Mutants display aberrant chloroplast and embryo development. The mRNA is cell-to-cell mobile.	chaperonin-60alpha;(source:Araport11)
AT2G27950.1	protein_coding	Ring/U-Box superfamily protein		Ring/U-Box superfamily protein;(source:Araport11)
AT2G27880.1	protein_coding	Argonaute family protein	AGO5.Required for antiviral RNA silencing.Confers resistance to Potato virus X.	Argonaute family protein;(source:Araport11)
AT2G27990.1	protein_coding	BEL1-like homeodomain 8	Encodes a BEL1-like homeobox gene that functions together with PNY in meristem maintenance by regulating the allocation process during vegetative and reproductive development. Both gene products are required for the competence of the SAM to respond properly to floral inductive signals.	BEL1-like homeodomain 8;(source:Araport11)
AT2G27940.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G27930.1	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT2G27920.1	protein_coding	serine carboxypeptidase-like 51		serine carboxypeptidase-like 51;(source:Araport11)
AT2G28020.1	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT2G36830.1	protein_coding	gamma tonoplast intrinsic protein	Encodes a tonoplast intrinsic protein, which functions as water channel. It has also been shown to be able to facilitate the transport of urea and hydrogen peroxide. Highly expressed in vascular tissues of the root, stem, cauline leaves and flowers but not in the apical meristems. The mRNA is cell-to-cell mobile.	gamma tonoplast intrinsic protein;(source:Araport11)
AT2G37000.1	protein_coding	TCP family transcription factor 		TCP family transcription factor;(source:Araport11)
AT2G36920.1	protein_coding			B3 domain protein;(source:Araport11)
AT2G37010.1	protein_coding	non-intrinsic ABC protein 12	member of NAP subfamily	non-intrinsic ABC protein 12;(source:Araport11)
AT2G36930.1	protein_coding	zinc finger (C2H2 type) family protein		zinc finger (C2H2 type) family protein;(source:Araport11)
AT2G36890.1	protein_coding	Duplicated homeodomain-like superfamily protein	"Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation. " The mRNA is cell-to-cell mobile.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT2G36840.1	protein_coding	ACT-like superfamily protein	Encodes a ACT domain-containing protein.  The ACT domain, named after bacterial aspartate kinase, chorismate mutase and TyrA (prephenate dehydrogenase), is a regulatory domain that serves as an amino acid-binding site in feedback-regulated amino acid metabolic enzymes.	ACT-like superfamily protein;(source:Araport11)
AT2G36900.1	protein_coding	membrin 11	member of Membrin Gene Family	membrin 11;(source:Araport11)
AT2G36950.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT2G37020.1	protein_coding	Translin family protein		Translin family protein;(source:Araport11)
AT2G36910.1	protein_coding	ATP binding cassette subfamily B1	Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root.  Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AT3G28860.  PGP1 mediates cellular efflux of IAA and interacts with PIN genes that may confer an accelerated vectoral component to PGP-mediated transport. The non-polar localization of PGP1 at root and shoot apices, where IAA gradient-driven transport is impaired, may be required to confer directionality to auxin transport in those tissues. The mRNA is cell-to-cell mobile.	ATP binding cassette subfamily B1;(source:Araport11)
AT2G36960.1	protein_coding	TSL-kinase interacting protein 1	Arabidopsis thaliana myb/SANT domain protein	TSL-kinase interacting protein 1;(source:Araport11)
AT2G37030.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT2G36970.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G37040.1	protein_coding	PHE ammonia lyase 1	Encodes PAL1, a phenylalanine ammonia-lyase.  Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).	PHE ammonia lyase 1;(source:Araport11)
AT2G36980.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G37050.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G36990.1	protein_coding	RNApolymerase sigma-subunit F	Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons.  It is a substrate for regulatory phosphorylation by cpCK2, a nuclear-coded plastid-targeted casein kinase 2, that has been implicated as a key component in plant sigma factor phosphorylation and transcriptional regulation.	RNApolymerase sigma-subunit F;(source:Araport11)
AT2G36850.1	protein_coding	glucan synthase-like 8	Encodes GSL8, a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose.  GSL8 is required for male gametophyte development and plant growth.  Has a role in entry of microspores into mitosis.  Also refer to GSL10 (At3g07160).	glucan synthase-like 8;(source:Araport11)
AT2G36870.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 32	Encodes a xyloglucan endotransglycosylase/hydrolase. Protein sequence and phylogenetic analysis indicates that this enzyme resides in Group III-A of the XTH family, with high similarity to Tropaeolum majus (nasturtium) xyloglucanase 1 (TmNXG1). By sequence similarity to XTH31 (At3g44990) and in vivo analysis, likely to exhibit predominant xyloglucan endo-hydrolase activity (EC 3.2.1.151) with only limited potential to act as a xyloglucan endo-transglycosylase (EC 2.4.1.207).	xyloglucan endotransglucosylase/hydrolase 32;(source:Araport11)
AT2G36880.1	protein_coding	methionine adenosyltransferase 3		methionine adenosyltransferase 3;(source:Araport11)
AT2G14310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Replication protein A 70 kDa DNA-binding subunit (RP-A) (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein) (DMRPA1). (Fruit fly),  blastp match of 27%25 identity and 6.3e-08 P-value to SP|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit (RP-A) (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein) (DMRPA1). (Fruit fly) {Drosophila melanogaster};(source:TAIR10)
AT2G14300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase,  blastp match of 40%25 identity and 2.5e-288 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G14390.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G14290.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		LL-diaminopimelate protein (DUF295);(source:Araport11)
AT2G14380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.6e-123 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G14280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.1e-16 P-value blast match to GB:AAC34906 reverse transcriptase (LINE-element) (Forficula auricularia);(source:TAIR10)
AT2G14370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.2e-116 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G14270.1	protein_coding	Cytochrome C oxidase polypeptide VIB family protein		Cytochrome C oxidase polypeptide VIB family protein;(source:Araport11)
AT2G14260.1	protein_coding	proline iminopeptidase	encodes proline iminopeptidase	proline iminopeptidase;(source:Araport11)
AT2G14350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);expressed protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287;(source:TAIR10)
AT2G14340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45370.1);(source:TAIR10)
AT2G14330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45350.1);(source:TAIR10)
AT2G14320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.7e-45 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G43360.1	protein_coding	Radical SAM superfamily protein	Catalyzes the conversion of dethiobiotin to biotin.	Radical SAM superfamily protein;(source:Araport11)
AT2G43440.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G43370.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G43450.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G43530.1	protein_coding	Scorpion toxin-like knottin superfamily protein	Encodes a defensin-like (DEFL) family protein. The mRNA is cell-to-cell mobile.	scorpion toxin-like knottin superfamily protein;(source:Araport11)
AT2G43540.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G43390.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G43460.1	protein_coding	Ribosomal L38e protein family		Ribosomal L38e protein family;(source:Araport11)
AT2G43550.1	protein_coding	Scorpion toxin-like knottin superfamily protein	Encodes a defensin-like (DEFL) family protein.	scorpion toxin-like knottin superfamily protein;(source:Araport11)
AT2G43400.1	protein_coding	electron-transfer flavoprotein:ubiquinone oxidoreductase	Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods.	electron-transfer flavoprotein:ubiquinone oxidoreductase;(source:Araport11)
AT2G43470.1	protein_coding	Protein of unknown function (DUF3755)		zinc finger CCCH domain protein, putative (DUF3755);(source:Araport11)
AT2G43330.1	protein_coding	inositol transporter 1	Encodes a tonoplast-localized myo-inositol exporter, involved in efflux of myo-inositol from the vacuole to the cytosol. The gene is ubiquitously expressed. Reduced root growth in knock-out mutants grown on low inositol agar medium.	inositol transporter 1;(source:Araport11)
AT2G43410.1	protein_coding	RNA binding	FPA  is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous  pathway). Mutations in  FPA  result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.	RNA binding protein;(source:Araport11)
AT2G43480.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G43340.1	protein_coding	Protein of unknown function (DUF1685)		hypothetical protein (DUF1685);(source:Araport11)
AT2G43560.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein		FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT2G43420.1	protein_coding	3-beta hydroxysteroid dehydrogenase/isomerase family protein		3-beta hydroxysteroid dehydrogenase/isomerase family protein;(source:Araport11)
AT2G43490.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G43350.1	protein_coding	glutathione peroxidase 3	Glutathione peroxidase. Functions as both a redox transducer and a scavenger in abscisic acid and drought stress responses. Interacts with ABI2 and ABI1.	glutathione peroxidase 3;(source:Araport11)
AT2G43430.1	protein_coding	glyoxalase 2-1	Encodes a predicted mitochondrial glyoxalase GLX2-1.  Studies using recombinant protein show that GLX2-1 contains a dinuclear metal binding site, but does not have glyoxalase 2 activity. Required for abiotic stress but not for normal plant growth.	glyoxalase 2-1;(source:Araport11)
AT2G43500.1	protein_coding	Plant regulator RWP-RK family protein		Plant regulator RWP-RK family protein;(source:Araport11)
AT2G43510.1	protein_coding	trypsin inhibitor protein 1	Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.	trypsin inhibitor protein 1;(source:Araport11)
AT2G43520.1	protein_coding	trypsin inhibitor protein 2	Encodes putative trypsin inhibitor protein which may function in defense against herbivory.  Member of the defensin-like (DEFL) family.	trypsin inhibitor protein 2;(source:Araport11)
AT2G04490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G04410.1	protein_coding	RPM1-interacting protein 4 (RIN4) family protein		RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT2G04480.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G04400.1	protein_coding	Aldolase-type TIM barrel family protein	Acts during tryptophan biosynthesis controlled by ERF109.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT2G04470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-67 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT2G04570.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates. The mRNA is cell-to-cell mobile.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G04460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10090.1);(source:TAIR10)
AT2G04390.1	protein_coding	Ribosomal S17 family protein		Ribosomal S17 family protein;(source:Araport11)
AT2G04560.1	protein_coding	transferases, transferring glycosyl groups		transferases, transferring glycosyl groups;(source:Araport11)
AT2G04450.1	protein_coding	nudix hydrolase homolog 6	Encodes a protein with NADH pyrophosphatase activity. Although this protein was also shown to have ADP-ribose diphosphatase activity in vitro, mutant analyses suggest that NUDX6 is involved in NADH metabolism in vivo.	nudix hydrolase homolog 6;(source:Araport11)
AT2G04380.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G04550.1	protein_coding	indole-3-butyric acid response 5	Encodes a protein phosphatase that interacts with MPK12, but not with other MAP kinases. It can dephosphorylate a dually phosphorylated MPK12 in vitro and can inactivate MPK12 in vivo. ibr5 mutants have reduced sensitivity to auxin and abscisic acid.  IBR5 promotes auxin responses, including auxin-inducible transcription, differently than the TIR1 auxin receptor and without destabilizing Aux/IAA repressor proteins. It plays a role in male gametophyte development, auxin and TCP growth regulatory pathways. Regulates leaf serrations development via modulation of the expression of PIN1.	indole-3-butyric acid response 5;(source:Araport11)
AT2G04440.1	protein_coding	MutT/nudix family protein		MutT/nudix family protein;(source:Araport11)
AT2G04540.1	protein_coding	Beta-ketoacyl synthase	Encodes a mitochondrial beta-ketoacyl-ACP synthase.	Beta-ketoacyl synthase;(source:Araport11)
AT2G04430.1	protein_coding	nudix hydrolase homolog 5		nudix hydrolase homolog 5;(source:Araport11)
AT2G04530.1	protein_coding	Metallo-hydrolase/oxidoreductase superfamily protein	Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast.	Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT2G04420.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G04520.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G04510.1	pseudogene			pseudogene of ribonuclease H;(source:Araport11)
AT2G04500.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G40890.1	protein_coding	cytochrome P450, family 98, subfamily A, polypeptide 3	encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis.  Also affects the biosynthesis of coumarins such as scopoletin and scopolin as a branching-out-pathway from the phenylpropanoid acid level.	cytochrome P450, family 98, subfamily A, polypeptide 3;(source:Araport11)
AT2G40820.1	protein_coding			stomatal closure actin-binding-like protein;(source:Araport11)
AT2G40900.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	Encodes a plasma membrane-localized amino acid transporter likely involved in amino acid export in the developing seed.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT2G40830.1	protein_coding	RING-H2 finger C1A	Encodes an E3 ubiquitin ligase for the GA-receptor GID1 that functions as a negative regulator of GA signaling in seedlings and seeds by inducing ubiquitin-dependent proteolysis of GID1s. Tyr321 phosphorylation of GARU by TAGK2 inactivates GARU.	RING-H2 finger C1A;(source:Araport11)
AT2G40910.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G40840.1	protein_coding	disproportionating enzyme 2	Encodes a cytosolic protein with transglucosidase and amylomaltase activity.   It is an essential component of the pathway from starch to sucrose and cellular metabolism in leaves at night. The protein binds to heteroglycans and utilizes glucose, mannose and xylose as acceptors. Fucose and galactose can also act as acceptors but less efficiently than the previous three. It was also was also recently reported to act on maltodextrins.  On the other hand, arabinose and fructose were not efficiently used.  Its role probably includes metabolizing maltose exported from the chloroplast. Studies using maltose extracted from the double mutant be2-1 be3-2 showed that this enzyme is preferentially active of &#946;-maltose. The mRNA is cell-to-cell mobile.	disproportionating enzyme 2;(source:Araport11)
AT2G40920.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G40850.1	protein_coding	phosphoinositide 4-kinase gamma 1		phosphoinositide 4-kinase gamma 1;(source:Araport11)
AT2G40930.1	protein_coding	ubiquitin-specific protease 5	Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation.	ubiquitin-specific protease 5;(source:Araport11)
AT2G40860.1	protein_coding	protein kinase family protein / protein phosphatase 2C ( PP2C) family protein		protein kinase family protein / protein phosphatase 2C ( PP2C) family protein;(source:Araport11)
AT2G40940.1	protein_coding	ethylene response sensor 1	Ethylene receptor, subfamily 1. Has histidine kinase activity.	ethylene response sensor 1;(source:Araport11)
AT2G40950.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	bZIP17 appears to regulate transcription as part of a salt and osmotic stress response. zip17 mutants show enhanced inhibition of primary root elongation in response to NaCl. Several salt-responsive genes, such as ATHB-7 show a reduced transcriptional response to a salt treatment in zip17 mutant seedlings. myc:bZIP17 undergoes proteolytic processing in salt-treated wild type seedlings, but not in s1p-3 (subtilase) mutants and there is also evidence for S1P-mediated cleavage of bZIP17 in vitro. In addition, an mGFP:bZIP17 protein moves from the ER to the nucleus following salt treatment. It is cleaved by S2P to allow translocation to the nucleus.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G40880.1	protein_coding	cystatin A	Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmotic, cold stress). The mRNA is cell-to-cell mobile.	cystatin A;(source:Araport11)
AT2G23180.1	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 1	member of CYP96A	cytochrome P450, family 96, subfamily A, polypeptide 1;(source:Araport11)
AT2G23260.1	protein_coding	UDP-glucosyl transferase 84B1		UDP-glucosyl transferase 84B1;(source:Araport11)
AT2G23320.1	protein_coding	WRKY DNA-binding protein 15	Encodes WRKY DNA-binding protein 15 (WRKY15).	WRKY DNA-binding protein 15;(source:Araport11)
AT2G23350.1	protein_coding	poly(A) binding protein 4	polyadenylate-binding protein, putative / PABP, putative.Member of the Class II family of PABP proteins. Highly and ubiquitously expressed. The mRNA is cell-to-cell mobile.	poly(A) binding protein 4;(source:Araport11)
AT2G23250.1	protein_coding	UDP-glucosyl transferase 84B2		UDP-glucosyl transferase 84B2;(source:Araport11)
AT2G23310.1	protein_coding	Rer1 family protein	Encodes AtRER1C1, a Golgi membrane protein involved in returning the molecules that are exported from the endoplasmic reticulum (ER) to the Golgi apparatus back to the ER (a mechanism known as retrieval).  There are two Arabidopsis homologues of AtRERC1: AtRER1A and AtRER1B.	Rer1 family protein;(source:Araport11)
AT2G23170.1	protein_coding	Auxin-responsive GH3 family protein	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.	Auxin-responsive GH3 family protein;(source:Araport11)
AT2G23240.1	protein_coding	Plant EC metallothionein-like protein, family 15	AtMT4b is a member of Type 4 metallothionein (MT) genes. It is involved in the early develoment of the embryo and in the accumulation of metal ions especially Zn in the seeds.	Plant EC metallothionein-like protein, family 15;(source:Araport11)
AT2G23300.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G23160.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G23230.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT2G23290.1	protein_coding	myb domain protein 70	Member of the R2R3 factor gene family.	myb domain protein 70;(source:Araport11)
AT2G23220.1	protein_coding	cytochrome P450, family 81, subfamily D, polypeptide 6	member of CYP81D	cytochrome P450, family 81, subfamily D, polypeptide 6;(source:Araport11)
AT2G23210.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G23200.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G23340.1	protein_coding	DREB and EAR motif protein 3	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	DREB and EAR motif protein 3;(source:Araport11)
AT2G23330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.9e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT2G23270.1	protein_coding		Encoding a precursor protein of a secreted peptide that is responsive to flg22 stimulus.	transmembrane protein;(source:Araport11)
AT2G23190.1	protein_coding	cytochrome P450, family 81, subfamily D, polypeptide 7	member of CYP81D	cytochrome P450, family 81, subfamily D, polypeptide 7;(source:Araport11)
AT2G35730.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT2G35680.1	protein_coding	Phosphotyrosine protein phosphatases superfamily protein	Encodes a phosphatidylglycerophosphate (PGP) phosphatase involved in the synthesis of plastidial Phosphatidylglycerol (PG) in conjunction with PGPP1 and PTPMT2 in root. PTPMT1 levels were higher in node, cauline leaf, and flower than in root, leaf, and stem.	Phosphotyrosine protein phosphatases superfamily protein;(source:Araport11)
AT2G35720.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein	Encodes OWL1, a J-domain protein involved in perception of very low light fluences.	DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT2G35670.1	protein_coding	VEFS-Box of polycomb protein	Encodes a negative regulator of seed development in the absence of pollination. In the ovule, the FIS2 transcripts  are accumulated at their highest level before fertilization  and gradually decrease after fertilization.	VEFS-Box of polycomb protein;(source:Araport11)
AT2G35640.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT2G35660.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein	Encodes a member of a novel gene family with  homology to known proteins involved in hydroxylation and oxidation of an aromatic ring.	FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT2G35650.1	protein_coding	cellulose synthase like	a member of Glycosyltransferase- Family 2 and encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein. Mutants exhibit defects in pollen tube growth and embryo development. The defective embryonic development was associated with reduced proliferation and failed cellularization of the endosperm.	cellulose synthase like;(source:Araport11)
AT2G35770.1	protein_coding	serine carboxypeptidase-like 28		serine carboxypeptidase-like 28;(source:Araport11)
AT2G35630.1	protein_coding	ARM repeat superfamily protein	Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity. The mRNA is cell-to-cell mobile.	ARM repeat superfamily protein;(source:Araport11)
AT2G35760.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT2G35750.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G35710.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein		Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT2G35620.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.Mucilage is easily detached from fei2 mutants seeds, and forms a capsule that is >50% smaller relative to wild-type.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G35700.1	protein_coding	ERF family protein 38	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.	ERF family protein 38;(source:Araport11)
AT2G35610.1	protein_coding	xyloglucanase 113	Encodes an arabinosyltransferase that modifies extensin proteins in root hair cells.	xyloglucanase 113;(source:Araport11)
AT2G35740.1	protein_coding	nositol transporter 3		nositol transporter 3;(source:Araport11)
AT2G35690.1	protein_coding	acyl-CoA oxidase 5	Encodes an acyl-CoA oxidase. Involved in jasmonate biosynthesis. Expressed uniformly in seedlings and throughout development.	acyl-CoA oxidase 5;(source:Araport11)
AT2G02680.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G02760.1	protein_coding	ubiquiting-conjugating enzyme 2	ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene.	ubiquiting-conjugating enzyme 2;(source:Araport11)
AT2G02750.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G02830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-37 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G02740.1	protein_coding	ssDNA-binding transcriptional regulator	Encodes a homolog of the potato p24 protein.  It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to the plastid and not the nucleus.	ssDNA-binding transcriptional regulator;(source:Araport11)
AT2G02820.1	protein_coding	myb domain protein 88	Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells.  This phenotype is enhanced in double mutants over the single mutant flp phenotype. Also regulates female reproductive development.	myb domain protein 88;(source:Araport11)
AT2G02730.1	protein_coding	Protein of unknown function (DUF1664)		GRIP/coiled-coil protein, putative (DUF1664);(source:Araport11)
AT2G02810.1	protein_coding	UDP-galactose transporter 1	Encodes a multitransmembrane  hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER.	UDP-galactose transporter 1;(source:Araport11)
AT2G02720.1	protein_coding	Pectate lyase family protein		Pectate lyase family protein;(source:Araport11)
AT2G02800.1	protein_coding	protein kinase 2B	Encodes protein kinase APK2b.	protein kinase 2B;(source:Araport11)
AT2G02710.1	protein_coding	PAS/LOV protein B	Encodes a putative blue light receptor protein.	PAS/LOV protein B;(source:Araport11)
AT2G02700.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G02790.1	protein_coding	IQ-domain 29	Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 29;(source:Araport11)
AT2G02780.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G02770.1	protein_coding	4'-phosphopantetheinyl transferase superfamily		4-phosphopantetheinyl transferase domain protein;(source:Araport11)
AT2G05550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.6e-37 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G05470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to At2g06630, At2g12120, At1g45090, At5g28482;(source:TAIR10)
AT2G05540.1	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT2G05460.1	transposable_element_gene	transposable element gene	pseudogene of Ulp1 protease family protein	transposable_element_gene;(source:Araport11);expressed protein, similar to At2g16170, At2g06640, At2g12110, At2g12100, At3g42590;(source:TAIR10)
AT2G05570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.8e-75 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G05530.1	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT2G05630.1	protein_coding	Ubiquitin-like superfamily protein	in the Arabidopsis  autophagy pathway	Ubiquitin-like superfamily protein;(source:Araport11)
AT2G05560.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT2G05520.1	protein_coding	glycine-rich protein 3	Encodes a glycine-rich protein that is expressed mainly in stems and leaves.  AtGRP3 functions in root size determination during development and in Al stress. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to desiccation. The mRNA is cell-to-cell mobile.	glycine-rich protein 3;(source:Araport11)
AT2G05450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT2G05440.1	protein_coding	GLYCINE RICH PROTEIN 9		GLYCINE RICH PROTEIN 9;(source:Araport11)
AT2G05510.1	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT2G05620.1	protein_coding	proton gradient regulation 5	Involved in electron flow in Photosystem I. Essential for photoprotection.	proton gradient regulation 5;(source:Araport11)
AT2G05490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.4e-88 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G05610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.2e-179 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G05480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45080.1);(source:TAIR10)
AT2G05600.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G05590.1	protein_coding	TLD-domain containing nucleolar protein		TLD-domain containing nucleolar protein;(source:Araport11)
AT2G05580.1	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT2G19080.1	protein_coding	metaxin-related		metaxin-like protein;(source:Araport11)
AT2G19150.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G19200.1	pseudogene	unknown protein		pseudogene of hypothetical protein (DUF626);(source:Araport11)
AT2G19160.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT2G19030.1	protein_coding	ralf-like 11	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 11;(source:Araport11)
AT2G19170.1	protein_coding	subtilisin-like serine protease 3	Encodes a novel subtilisin-like serine protease.	subtilisin-like serine protease 3;(source:Araport11)
AT2G19090.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		DUF630 family protein (DUF630 and DUF632);(source:Araport11)
AT2G19100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.2e-33 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT2G19040.1	protein_coding	RALF-like 12	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	RALF-like 12;(source:Araport11)
AT2G19180.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G19050.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G19110.1	protein_coding	heavy metal atpase 4	Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and  Cd resistance, suggesting a role in Zn and Cd transport. The mRNA is cell-to-cell mobile.	heavy metal atpase 4;(source:Araport11)
AT2G19120.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G19190.1	protein_coding	FLG22-induced receptor-like kinase 1	Encodes a receptor-like protein kinase that is involved in early defense signaling. Expression of this gene is strongly induced during leaf senescence.  It is a target of the transcription factor AtWRKY6.	FLG22-induced receptor-like kinase 1;(source:Araport11)
AT2G19060.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT2G19130.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT2G19070.1	protein_coding	spermidine hydroxycinnamoyl transferase	encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)	spermidine hydroxycinnamoyl transferase;(source:Araport11)
AT2G19140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.0e-09 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G22890.1	protein_coding	Kua-ubiquitin conjugating enzyme hybrid localisation domain		Kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein;(source:Araport11)
AT2G22900.1	protein_coding	Galactosyl transferase GMA12/MNN10 family protein	Encodes MUCI10, a galactomannan-1,6-galactosyltransferase. MUCI10 likely decorates glucomannan, synthesized by CSLA2, with galactose residues in vivo. The degree of galactosylation is essential for the synthesis of the GGM backbone, the structure of cellulose, mucilage density, as well as the adherence of pectin.	Galactosyl transferase GMA12/MNN10 family protein;(source:Araport11)
AT2G22880.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT2G22910.1	protein_coding	N-acetyl-l-glutamate synthase 1		N-acetyl-l-glutamate synthase 1;(source:Araport11)
AT2G22920.1	protein_coding	serine carboxypeptidase-like 12		serine carboxypeptidase-like 12;(source:Araport11)
AT2G22930.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G22940.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G22830.1	protein_coding	squalene epoxidase 2		squalene epoxidase 2;(source:Araport11)
AT2G22840.1	protein_coding	growth-regulating factor 1	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower	growth-regulating factor 1;(source:Araport11)
AT2G22850.1	protein_coding	basic leucine-zipper 6		basic leucine-zipper 6;(source:Araport11)
AT2G22860.1	protein_coding	phytosulfokine 2 precursor	Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor. The mRNA is cell-to-cell mobile.	phytosulfokine 2 precursor;(source:Araport11)
AT2G22870.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G27130.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G27050.1	protein_coding	ETHYLENE-INSENSITIVE3-like 1	ethylene-insensitive3-like1 (EIL1) The mRNA is cell-to-cell mobile.	ETHYLENE-INSENSITIVE3-like 1;(source:Araport11)
AT2G27060.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G27040.1	protein_coding	Argonaute family protein	AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens including Tobacco rattle virus.	Argonaute family protein;(source:Araport11)
AT2G26970.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G27070.1	protein_coding	response regulator 13	member of Response Regulator: B- Type	response regulator 13;(source:Araport11)
AT2G27080.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT2G26980.1	protein_coding	CBL-interacting protein kinase 3	encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.	CBL-interacting protein kinase 3;(source:Araport11)
AT2G27090.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		bZIP transcription factor (DUF630 and DUF632);(source:Araport11)
AT2G26990.1	protein_coding	proteasome family protein	Represses photomorphogenesis and induces skotomorphogenesis in the dark.	proteasome family protein;(source:Araport11)
AT2G27100.1	protein_coding	C2H2 zinc-finger protein SERRATE (SE)	Identified as a leaf form mutant by Redei having serrated leaves. Further analysis of the single loss of function allele indicated pleiotropic effects extending to many aspects of shoot development  such as taller meristems, alterations in phase transition, phyllotaxy and branching. Encodes a single zinc finger containing protein that is expressed in meristems and organ primordia and forms a complex with both AtCBC (cap binding complex) proteins to control alternative splicing.	C2H2 zinc-finger protein SERRATE (SE);(source:Araport11)
AT2G27000.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 8	member of CYP705A	cytochrome P450, family 705, subfamily A, polypeptide 8;(source:Araport11)
AT2G27110.1	protein_coding	FAR1-related sequence 3		FAR1-related sequence 3;(source:Araport11)
AT2G27010.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 9	member of CYP705A	cytochrome P450, family 705, subfamily A, polypeptide 9;(source:Araport11)
AT2G27120.1	protein_coding	DNA polymerase epsilon catalytic subunit	Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1.	DNA polymerase epsilon catalytic subunit;(source:Araport11)
AT2G27020.1	protein_coding	20S proteasome alpha subunit G1	Encodes 20S proteasome alpha 7 subunit PAG1.	20S proteasome alpha subunit G1;(source:Araport11)
AT2G27030.1	protein_coding	calmodulin 5	encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. The mRNA is cell-to-cell mobile.	calmodulin 5;(source:Araport11)
AT2G26960.1	protein_coding	myb domain protein 81	Member of the R2R3 factor gene family.	myb domain protein 81;(source:Araport11)
AT2G32960.1	protein_coding	Phosphotyrosine protein phosphatases superfamily protein	Encodes an atypical dual-speci&#64257;city phosphatase.	Phosphotyrosine protein phosphatases superfamily protein;(source:Araport11)
AT2G32880.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G32950.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. The mRNA is cell-to-cell mobile.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G32870.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G32940.1	protein_coding	Argonaute family protein	Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing.	Argonaute family protein;(source:Araport11)
AT2G32990.1	protein_coding	glycosyl hydrolase 9B8		glycosyl hydrolase 9B8;(source:Araport11)
AT2G32930.1	protein_coding	zinc finger nuclease 2	Encodes a zinc finger protein.	zinc finger nuclease 2;(source:Araport11)
AT2G32860.1	protein_coding	beta glucosidase 33		beta glucosidase 33;(source:Araport11)
AT2G32980.1	protein_coding			HAUS augmin-like complex subunit;(source:Araport11)
AT2G32920.1	protein_coding	PDI-like 2-3	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.	PDI-like 2-3;(source:Araport11)
AT2G32970.1	protein_coding			G1/S-specific cyclin-E protein;(source:Araport11)
AT2G32910.1	protein_coding	DCD (Development and Cell Death) domain protein		DCD (Development and Cell Death) domain protein;(source:Araport11)
AT2G32900.1	protein_coding	centromere/kinetochore protein, putative (ZW10)	Homologous to Drosophila ZW10, a centromere/kinetochore protein involved in chromosome segregation. Member of MAG2 complex on the ER that is responsible for efficient transport of seed storage proteins, functions in protein transport between the ER and Golgi apparatus, contain a Zeste?White 10 (ZW10) domain and a Sec39 domain. Required for proper maturation of seed storage proteins.	centromere/kinetochore protein, putative (ZW10);(source:Araport11)
AT2G32890.1	protein_coding	RALF-like 17	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. This gene is contained within a highly AT-rich repetitive sequence region.	RALF-like 17;(source:Araport11)
AT2G14110.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G14120.1	protein_coding	dynamin related protein	Encodes a dynamin related protein. DRPs are self-assembling GTPasse involved in fission and fusion of membranes. DRP3B functions in mitochondrion and peroxisome fission in combination with DRP3A.	dynamin related protein;(source:Araport11)
AT2G14130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1);(source:TAIR10)
AT2G14170.1	protein_coding	aldehyde dehydrogenase  6B2	Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase	aldehyde dehydrogenase 6B2;(source:Araport11)
AT2G14140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G47270.1);(source:TAIR10)
AT2G14180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.3e-307 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G14150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.5e-80 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G14190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.5e-177 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G14160.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G14090.1	pseudogene			pseudogene of F-box/RNI-like superfamily protein;(source:Araport11)
AT2G14100.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 13	a member of the cytochrome P450 family	cytochrome P450, family 705, subfamily A, polypeptide 13;(source:Araport11)
AT2G25230.1	protein_coding	myb domain protein 100	Encodes a putative transcription factor (MYB100).	myb domain protein 100;(source:Araport11)
AT2G25310.1	protein_coding	Protein of unknown function (DUF2012)		ER membrane protein complex subunit-like protein (DUF2012);(source:Araport11)
AT2G25300.1	protein_coding	Galactosyltransferase family protein	Encodes a hydroxyproline O-galactosyltransferase.	Galactosyltransferase family protein;(source:Araport11)
AT2G25330.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G25210.1	protein_coding	Ribosomal protein L39 family protein		Ribosomal protein L39 family protein;(source:Araport11)
AT2G25290.1	protein_coding	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT2G25320.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G25280.1	protein_coding			AmmeMemoRadiSam system protein B;(source:Araport11)
AT2G25270.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G25260.1	protein_coding			Hyp O-arabinosyltransferase-like protein;(source:Araport11)
AT2G25250.1	protein_coding			serine/arginine repetitive matrix-like protein;(source:Araport11)
AT2G25240.1	protein_coding	Serine protease inhibitor (SERPIN) family protein		Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT2G25340.1	protein_coding	vesicle-associated membrane protein 712	Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.	vesicle-associated membrane protein 712;(source:Araport11)
AT2G27210.1	protein_coding	BRI1 suppressor 1 (BSU1)-like 3		BRI1 suppressor 1 (BSU1)-like 3;(source:Araport11)
AT2G27200.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a cytosolic protein that shares 77.3% identity with AtLSG1-2 at the protein sequence level. The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G27190.1	protein_coding	purple acid phosphatase 12	Encodes a root-secreted purple acid phosphatase involved in extracellular phosphate-scavenging.	purple acid phosphatase 12;(source:Araport11)
AT2G27180.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G17220.1	protein_coding	Protein kinase superfamily protein	Encodes a putative serine/threonine-specific protein kinase kin3. Protein is N-myristoylated.	Protein kinase superfamily protein;(source:Araport11)
AT2G17240.1	protein_coding			arginine/serine-rich-like splicing factor;(source:Araport11)
AT2G17230.1	protein_coding	EXORDIUM like 5		EXORDIUM like 5;(source:Araport11)
AT2G17250.1	protein_coding	CCAAT-binding factor	Encodes a nucleolar protein that is a ribosome biogenesis co-factor. Mutants display aberrant RNA processing and homozygous embryos arrest in the globular stage of development.	CCAAT-binding factor;(source:Araport11)
AT2G17170.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G17180.1	protein_coding	C2H2-like zinc finger protein	Target promoter of the male germline-specific transcription factor DUO1.	C2H2-like zinc finger protein;(source:Araport11)
AT2G17190.1	protein_coding	ubiquitin family protein	Encodes a ubiquitin receptor protein that specifically associates with PEX2 and PEX12.	ubiquitin family protein;(source:Araport11)
AT2G17200.1	protein_coding	ubiquitin family protein	Encodes a ubiquitin receptor protein that specifically associates with PEX2 and PEX12.	ubiquitin family protein;(source:Araport11)
AT2G17210.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G17150.1	protein_coding	Plant regulator RWP-RK family protein		Plant regulator RWP-RK family protein;(source:Araport11)
AT2G01820.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G01900.1	protein_coding	DNAse I-like superfamily protein	Encodes an inositol polyphosphate phosphatidylinositol 5-phosphatase that is expressed in roots and is involved in mediating salt tolerance through endocytosis.	DNAse I-like superfamily protein;(source:Araport11)
AT2G01910.1	protein_coding	Microtubule associated protein (MAP65/ASE1) family protein	Binds microtubules. Induces a crisscross mesh of microtubules, not bundles.  Not involved in microtubule polymerization nor nucleation. Localizes to mitochondria. The mRNA is cell-to-cell mobile.	Microtubule associated protein (MAP65/ASE1) family protein;(source:Araport11)
AT2G01830.1	protein_coding	CHASE domain containing histidine kinase protein	Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane	CHASE domain containing histidine kinase protein;(source:Araport11)
AT2G01840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.6e-34 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G01850.1	protein_coding	endoxyloglucan transferase A3	EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves. The mRNA is cell-to-cell mobile.	endoxyloglucan transferase A3;(source:Araport11)
AT2G01860.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G01870.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G01880.1	protein_coding	purple acid phosphatase 7		purple acid phosphatase 7;(source:Araport11)
AT2G01890.1	protein_coding	purple acid phosphatase 8	Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group.	purple acid phosphatase 8;(source:Araport11)
AT2G04280.1	protein_coding			calcium ion-binding protein;(source:Araport11)
AT2G04270.1	protein_coding	RNAse E/G-like	Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.	RNAse E/G-like protein;(source:Araport11)
AT2G04260.1	pseudogene			pseudogene of P-loop nucleoside triphosphate hydrolase superfamily protein;(source:Araport11)
AT2G04250.1	pseudogene			pseudogene of ribonuclease H;(source:Araport11)
AT2G04240.1	protein_coding	RING/U-box superfamily protein	Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus.  Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism.	RING/U-box superfamily protein;(source:Araport11)
AT2G04290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.1e-36 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G04300.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G16650.1	protein_coding	proteinaceous RNase P 2	Encodes a proteinaceous RNase P that supports RNase P activity in vivo in both organelles and the nucleus. It is also involved in the maturation of small nucleolar RNA (snoRNA) and mRNA.	proteinaceous RNase P 2;(source:Araport11)
AT2G16660.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G16670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-190 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata);(source:TAIR10)
AT2G16680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.0e-35 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G16690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41570.1);(source:TAIR10)
AT2G16770.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	Basic-region leucine zipper (bZIP23) transcription factor involved in the adaptation to zinc deficiency. Binds ZDRE motifs.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G16780.1	protein_coding	Transducin family protein / WD-40 repeat family protein	Encodes a WD-40 repeat protein similar to yeast MSI1.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G16700.1	protein_coding	actin depolymerizing factor 5	Encodes actin depolymerizing factor 5 (ADF5).	actin depolymerizing factor 5;(source:Araport11)
AT2G16610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 6.1e-89 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT2G16710.1	protein_coding	Iron-sulphur cluster biosynthesis family protein		Iron-sulfur cluster biosynthesis family protein;(source:Araport11)
AT2G16790.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G16720.1	protein_coding	myb domain protein 7	Encodes a member of MYB3R- and R2R3- type MYB- encoding gene family that acts as a repressor of flavonol biosynthesis. AtMYB7 gene expression is induced by salt treatment.	myb domain protein 7;(source:Araport11)
AT2G16800.1	protein_coding	high-affinity nickel-transport family protein		high-affinity nickel-transport family protein;(source:Araport11)
AT2G16620.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G16730.1	protein_coding	glycosyl hydrolase family 35 protein	putative beta-galactosidase (BGAL13 gene)	glycosyl hydrolase family 35 protein;(source:Araport11)
AT2G16740.1	protein_coding	ubiquitin-conjugating enzyme 29		ubiquitin-conjugating enzyme 29;(source:Araport11)
AT2G16810.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G16630.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT2G16750.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT2G16820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1);(source:TAIR10)
AT2G16640.1	protein_coding	multimeric translocon complex in the outer envelope membrane 132		multimeric translocon complex in the outer envelope membrane 132;(source:Araport11)
AT2G16760.1	protein_coding	Calcium-dependent phosphotriesterase superfamily protein		Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT2G16830.1	pseudogene		a pseudogene whose sequence is similar to plasma membrane intrinsic protein 3 (PIP3)	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G42190.1	protein_coding			rho GTPase-activating gacO-like protein;(source:Araport11)
AT2G42270.1	protein_coding	U5 small nuclear ribonucleoprotein helicase	Similar to yeast Brr2p DEAD/DExH box ATP-dependent RNA helicase.	U5 small nuclear ribonucleoprotein helicase;(source:Araport11)
AT2G42200.1	protein_coding	squamosa promoter binding protein-like 9	Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b. SPL  activity nonautonomously inhibits initiation of new leaves at the shoot apical meristem.	squamosa promoter binding protein-like 9;(source:Araport11)
AT2G42280.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G42180.1	protein_coding			cotton fiber protein;(source:Araport11)
AT2G42210.1	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT2G42220.1	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein		Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT2G42230.1	protein_coding	C-CAP/cofactor C-like domain-containing protein		C-CAP/cofactor C-like domain-containing protein;(source:Araport11)
AT2G42120.1	protein_coding	DNA polymerase delta small subunit		DNA polymerase delta small subunit;(source:Araport11)
AT2G42240.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G42130.1	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT2G42250.1	protein_coding	cytochrome P450, family 712, subfamily A, polypeptide 1	member of CYP712A	cytochrome P450, family 712, subfamily A, polypeptide 1;(source:Araport11)
AT2G42140.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT2G42260.1	protein_coding	uv-b-insensitive 4	Encodes a novel plant-specific protein of unknown function. The UVI4 gene is expressed mainly in actively dividing cells. The hypocotyl cells in mutant seedlings undergo one extra round of endoreduplication. The uvi4 mutation also promoted the progression of endo-reduplication during leaf development.	uv-b-insensitive 4;(source:Araport11)
AT2G42150.1	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT2G42160.1	protein_coding	zinc finger (ubiquitin-hydrolase) domain-containing protein	Encodes a RING domain containing protein BRIZ1. BRIZ1 (At2g42160) and BRIZ2 (At2g26000) proteins form a heteromeric E3 ligase complex required for seed germination and post-germination growth.	zinc finger (ubiquitin-hydrolase) domain-containing protein;(source:Araport11)
AT2G42170.1	protein_coding	Actin family protein		Actin family protein;(source:Araport11)
AT2G05780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.5e-37 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G05770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OSJNBb0043H09.1,  blastp match of 30%25 identity and 1.6e-29 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G05760.1	protein_coding	Xanthine/uracil permease family protein		Xanthine/uracil permease family protein;(source:Araport11)
AT2G07100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.2e-42 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G07210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.8e-27 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G07110.1	protein_coding			exosome complex exonuclease RRP46-like protein;(source:Araport11)
AT2G07120.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G07050.1	protein_coding	cycloartenol synthase 1	Involved in the biosynthesis of brassinosteroids. Catalyzes the reaction from epoxysqualene to cycloartenol.	cycloartenol synthase 1;(source:Araport11)
AT2G07140.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G07220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to  MURA transposase of maize Mutator transposon;(source:TAIR10)
AT2G07150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to P0707D10.17,  blastp match of 27%25 identity and 3.3e-12 P-value to GP|13603432|dbj|BAB40159.1||AP002910 P0707D10.17 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G07230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.1e-59 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G07130.1	pseudogene			pseudogene of F-box family protein;(source:Araport11)
AT2G07160.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.2e-44 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G07170.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT2G07180.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G07190.1	protein_coding	Domain of unknown function (DUF1985)		transmembrane protein, putative (DUF1985);(source:Araport11)
AT2G07080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.0e-74 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G07200.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT2G07090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43920.1);(source:TAIR10)
AT2G32450.1	protein_coding	Calcium-binding tetratricopeptide family protein		Calcium-binding tetratricopeptide family protein;(source:Araport11)
AT2G32540.1	protein_coding	cellulose synthase-like B4	encodes a gene similar to cellulose synthase The mRNA is cell-to-cell mobile.	cellulose synthase-like B4;(source:Araport11)
AT2G32620.1	protein_coding	cellulose synthase-like B	encodes a gene similar to cellulose synthase	cellulose synthase-like B;(source:Araport11)
AT2G32550.1	protein_coding	Cell differentiation, Rcd1-like protein		Cell differentiation, Rcd1-like protein;(source:Araport11)
AT2G32630.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT2G32500.1	protein_coding	Stress responsive alpha-beta barrel domain protein		Stress responsive alpha-beta barrel domain protein;(source:Araport11)
AT2G32560.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G32510.1	protein_coding	mitogen-activated protein kinase kinase kinase 17	member of MEKK subfamily	mitogen-activated protein kinase kinase kinase 17;(source:Araport11)
AT2G32520.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G32530.1	protein_coding	cellulose synthase-like B3	encodes a gene similar to cellulose synthase	cellulose synthase-like B3;(source:Araport11)
AT2G32580.1	protein_coding	Protein of unknown function (DUF1068)		transmembrane protein, putative (DUF1068);(source:Araport11)
AT2G32590.1	protein_coding			condensin complex subunit;(source:Araport11)
AT2G32600.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G32610.1	protein_coding	cellulose synthase-like B1	encodes a gene similar to cellulose synthase	cellulose synthase-like B1;(source:Araport11)
AT2G32470.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G32480.1	protein_coding	ARABIDOPSIS SERIN PROTEASE	Metalloprotease essential for plastid development. Located in the inner membrane of chloroplasts.	chloroplastic membrane metallo proteases;(source:Araport11)
AT2G32490.1	pseudogene		pseudogene of 3'-5' exonuclease domain-containing protein	pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT2G13420.1	pseudogene		Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G13430.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G13440.1	protein_coding	glucose-inhibited division family A protein		glucose-inhibited division family A protein;(source:Araport11)
AT2G13450.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT2G13460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.0e-35 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G22150.1	pseudogene			pseudogene of TRAF-like family protein;(source:Araport11)
AT2G22240.1	protein_coding	myo-inositol-1-phosphate synthase 2	** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocalization experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	myo-inositol-1-phosphate synthase 2;(source:Araport11)
AT2G22320.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G22230.1	protein_coding	Thioesterase superfamily protein		Thioesterase superfamily protein;(source:Araport11)
AT2G22210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.1e-19 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G22200.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G22190.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G22310.1	protein_coding	ubiquitin-specific protease 4	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 4;(source:Araport11)
AT2G22180.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G22300.1	protein_coding	signal responsive 1	Encodes a putative CAM binding transcription factor. Loss of function mutations show enhanced resistance to fungal and bacterial pathogens suggesting that CAMTA functions to suppress defense responses.It acts in the cold response pathway, it can bind to and activate the expression of DREB1 genes.	signal responsive 1;(source:Araport11)
AT2G22170.1	protein_coding	Lipase/lipooxygenase, PLAT/LH2 family protein		Lipase/lipooxygenase, PLAT/LH2 family protein;(source:Araport11)
AT2G22290.1	protein_coding	RAB GTPase homolog H1D		RAB GTPase homolog H1D;(source:Araport11)
AT2G22160.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT2G22270.1	protein_coding			hematological/neurological-like protein;(source:Araport11)
AT2G22260.1	protein_coding	oxidoreductase, 2OG-Fe(II) oxygenase family protein	Encodes a homolog of the E. coli AlkB gene, whose protein product is a DNA repair enzyme important in reversing methylation damage.	oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT2G22250.1	protein_coding	aspartate aminotransferase	Encodes a prokaryotic-type plastidic aspartate aminotransferase with glutamate/aspartate-prephenate aminotransferase (PAT) activity.	aspartate aminotransferase;(source:Araport11)
AT2G14930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.9e-255 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT2G14860.1	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT2G14870.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G14880.1	protein_coding	SWIB/MDM2 domain superfamily protein		SWIB/MDM2 domain superfamily protein;(source:Araport11)
AT2G14890.1	protein_coding	arabinogalactan protein 9	putative proline-rich protein (At2g14890) mRNA, complete The mRNA is cell-to-cell mobile.	arabinogalactan protein 9;(source:Araport11)
AT2G14940.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.1e-37 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G14900.1	protein_coding	Gibberellin-regulated family protein		Gibberellin-regulated family protein;(source:Araport11)
AT2G14950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.5e-57 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G14910.1	protein_coding			MAR-binding filament-like protein;(source:Araport11)
AT2G14960.1	protein_coding	Auxin-responsive GH3 family protein	encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin.	Auxin-responsive GH3 family protein;(source:Araport11)
AT2G14920.1	protein_coding	sulfotransferase 4A	Encodes a brassinosteroid sulfotransferase that may be involved in brassinosteroid inactivation. In vitro experiements show that this enzyme can act on a broad group of naturally occurring brassinosteroids, including the 24-epimers and (22R,23R)-28 homobrassinosteroids, that have an array of different side chains, though it shows a preference for (22R,23R)-28 homobrassinosteroids. ST4A is expressed in the roots and transcript levels fall in response to cytokinin treatment.	sulfotransferase 4A;(source:Araport11)
AT2G41450.1	protein_coding	N-acetyltransferases;N-acetyltransferases		N-acetyltransferase;(source:Araport11)
AT2G41460.1	protein_coding	apurinic endonuclease-redox protein	Apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.	apurinic endonuclease-redox protein;(source:Araport11)
AT2G41470.1	protein_coding			agamous-like MADS-box protein;(source:Araport11)
AT2G41480.1	protein_coding	Peroxidase superfamily protein	Encodes a cationic cell-wall-bound peroxidase homolog that is involved in the lignification of cell walls.	peroxidase superfamily protein;(source:Araport11)
AT2G29830.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G29820.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G29720.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein	Encodes CTF2B.	FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT2G29800.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G29790.1	protein_coding	Maternally expressed gene (MEG) family protein	Encodes a Maternally expressed gene (MEG) family protein [pseudogene]	maternally expressed family protein;(source:Araport11)
AT2G29710.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G29630.1	protein_coding	thiaminC	Encodes a protein involved in thiamine biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. The THIC transcript is regulated by a TPP riboswitch in the 3' UTR. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene.	thiaminC;(source:Araport11)
AT2G29780.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G29620.1	protein_coding			dentin sialophosphoprotein;(source:Araport11)
AT2G29770.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G29700.1	protein_coding	pleckstrin homologue 1	Encodes a protein containing one PH (pleckstrin homology) domain with a short N-terminal extension The mRNA is cell-to-cell mobile.	pleckstrin homologue 1;(source:Araport11)
AT2G29810.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G29610.1	pseudogene		pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domain	pseudogene of Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G29760.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a chloroplast RNA editing factor.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G29690.1	protein_coding	anthranilate synthase 2	Encode a functional anthranilate synthase protein. Expressed at a constitutive basal level. Expression was not induced by wounding nor bacterial pathogen infiltration. Involved in aromatic amino acid biosynthesis.	anthranilate synthase 2;(source:Araport11)
AT2G29870.1	protein_coding	Aquaporin-like superfamily protein		Aquaporin-like superfamily protein;(source:Araport11)
AT2G29750.1	protein_coding	UDP-glucosyl transferase 71C1		UDP-glucosyl transferase 71C1;(source:Araport11)
AT2G29680.1	protein_coding	cell division control 6	Encodes cell division control protein 6 (CDC6).	cell division control 6;(source:Araport11)
AT2G29740.1	protein_coding	UDP-glucosyl transferase 71C2		UDP-glucosyl transferase 71C2;(source:Araport11)
AT2G29670.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G29860.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G29730.1	protein_coding	UDP-glucosyl transferase 71D1		UDP-glucosyl transferase 71D1;(source:Araport11)
AT2G29660.1	protein_coding	zinc finger (C2H2 type) family protein		zinc finger (C2H2 type) family protein;(source:Araport11)
AT2G29850.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G29650.1	protein_coding	phosphate transporter 4;1	Encodes an inorganic phosphate transporter (PHT4;1) that  is localized to the thylakoid membrane.	phosphate transporter 4;(source:Araport11)
AT2G29840.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G29640.1	protein_coding	JOSEPHIN-like protein		JOSEPHIN-like protein;(source:Araport11)
AT2G12490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G12440.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase,  blastp match of 29%25 identity and 8.8e-79 P-value to GP|27311287|gb|AAO00713.1||AC078894 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G12500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.8e-208 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G12530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G12510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.8e-206 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT2G12540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G12520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04070.1);(source:TAIR10)
AT2G12550.1	protein_coding	ubiquitin-associated (UBA)/TS-N domain-containing protein		ubiquitin-associated (UBA)/TS-N domain-containing protein;(source:Araport11)
AT2G12450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.7e-96 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT2G12460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);expressed protein, similar to GB:AAC28203;(source:TAIR10)
AT2G12470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.1e-277 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G12480.1	protein_coding	serine carboxypeptidase-like 43		serine carboxypeptidase-like 43;(source:Araport11)
AT2G30160.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT2G30150.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G30170.1	protein_coding	Protein phosphatase 2C family protein	Encodes a chloroplast PP2C phosphatase that is required for efficient dephosphorylation of PSII proteins and involved in light acclimation.	Protein phosphatase 2C family protein;(source:Araport11)
AT2G30140.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a putative glycosyltransferase. Regulates flowering time via FLOWERING LOCUS C.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G30130.1	protein_coding	Lateral organ boundaries (LOB) domain family protein	Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes  which repress KNOX gene expression.	Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT2G30120.1	protein_coding			protein FLC EXPRESSOR;(source:Araport11)
AT2G30110.1	protein_coding	ubiquitin-activating enzyme 1	Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the constitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling.	ubiquitin-activating enzyme 1;(source:Araport11)
AT2G30100.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT2G30090.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G30200.1	protein_coding	catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding	Malonyl-ACP expressed in developing seeds. Loss of function mutants are embryo lethal and over expression in seeds leads to increased seed oil content.	EMBRYO DEFECTIVE 3147;(source:Araport11)
AT2G18030.1	protein_coding	Peptide methionine sulfoxide reductase family protein		Peptide methionine sulfoxide reductase family protein;(source:Araport11)
AT2G18020.1	protein_coding	Ribosomal protein L2 family		Ribosomal protein L2 family;(source:Araport11)
AT2G18040.1	protein_coding	peptidylprolyl cis/trans isomerase, NIMA-interacting 1	phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds The mRNA is cell-to-cell mobile.	peptidylprolyl cis/trans isomerase, NIMA-interacting 1;(source:Araport11)
AT2G18010.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT2G18000.1	protein_coding	TBP-associated factor 14		TBP-associated factor 14;(source:Araport11)
AT2G17990.1	protein_coding		Calcium-dependent protein kinase 1 adaptor protein involved in vacuolar transport and lytic vacuole biogenesis.	polyamine-modulated factor 1-binding protein;(source:Araport11)
AT2G18090.1	protein_coding	PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein		PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein;(source:Araport11)
AT2G17980.1	protein_coding	Sec1/munc18-like (SM) proteins superfamily	member of SLY1 Gene Family The mRNA is cell-to-cell mobile.	Sec1/munc18-like (SM) proteins superfamily;(source:Araport11)
AT2G18080.1	protein_coding	Serine carboxypeptidase S28 family protein		Serine carboxypeptidase S28 family protein;(source:Araport11)
AT2G18070.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G18060.1	protein_coding	vascular related NAC-domain protein 1	Encodes a NAC-domain transcription factor that is expressed in developing vessels and protoxylem. Along with other members of this family, VND1 appears to regulate the development of genes required for secondary cell wall biosynthesis.	vascular related NAC-domain protein 1;(source:Araport11)
AT2G18050.1	protein_coding	histone H1-3	encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. The mRNA is cell-to-cell mobile.	histone H1-3;(source:Araport11)
AT2G24310.1	protein_coding			TPRXL;(source:Araport11)
AT2G24370.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT2G24460.1	protein_coding			C3HC4-type RING finger protein;(source:Araport11)
AT2G24390.1	protein_coding	AIG2-like (avirulence induced gene) family protein		AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT2G24290.1	protein_coding	Protein of unknown function (DUF1068)		ubiquitin-associated protein (DUF1068);(source:Araport11)
AT2G24320.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G24400.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT2G24470.1	protein_coding	Plant protein of unknown function (DUF869)		filament-like protein (DUF869);(source:Araport11)
AT2G24330.1	protein_coding	Protein of unknown function (DUF2296)	Encodes one of two LUNAPARK proteins in Arabidopsis.  Both LNPA and LNPB are predominantly distributed throughout the ER, but not preferentially localized at the three-way junctions. Mutation of both LNPA and LNPB together caused the cortical ER to develop poor ER cisternae and a less dense tubular network.	integral membrane metal-binding family protein (DUF2296);(source:Araport11)
AT2G24410.1	protein_coding			SMAD/FHA domain protein;(source:Araport11)
AT2G24480.1	protein_coding	Zinc finger, C3HC4 type (RING finger) family protein		Zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT2G24340.1	protein_coding	sequence-specific DNA binding transcription factors		sequence-specific DNA binding transcription factor;(source:Araport11)
AT2G24420.1	protein_coding	DNA repair ATPase-related		DNA repair ATPase-like protein;(source:Araport11)
AT2G24490.1	protein_coding	replicon protein A2	Encodes a component of Replication Protein A. Component of transcriptional gene silencing which does not affect endogenous small RNA  accumulation nor DNA methylation. Localized in the nucleus. Involved in DNA repair. Interacts physically with ROS1.	replicon protein A2;(source:Araport11)
AT2G24350.1	protein_coding	RNA binding (RRM/RBD/RNP motifs) family protein		RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G24430.1	protein_coding	NAC domain containing protein 38		NAC domain containing protein 38;(source:Araport11)
AT2G24500.1	protein_coding	Zinc finger protein 622	Encodes a C2H2 zinc finger protein FZF.	Zinc finger protein 622;(source:Araport11)
AT2G24360.1	protein_coding	Protein kinase superfamily protein	STYK serine threonine kinase that phosphorylates several oil body proteins including OLE1 and CLO4/CAL4.	Protein kinase superfamily protein;(source:Araport11)
AT2G24440.1	protein_coding	selenium binding		selenium binding protein;(source:Araport11)
AT2G24510.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G24450.1	protein_coding	FASCICLIN-like arabinogalactan protein 3 precursor	Fasciclin-like arabinogalactan protein. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan protein 3 precursor;(source:Araport11)
AT2G24300.1	protein_coding	Calmodulin-binding protein		Calmodulin-binding protein;(source:Araport11)
AT2G39850.1	protein_coding	Subtilisin-like serine endopeptidase family protein		Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT2G39940.1	protein_coding	RNI-like superfamily protein	Encodes a protein containing Leu-rich repeats  and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation. Amino acid mutations  in COI1 distinctively affect jasmonate-regulated male fertility.CFA-Ile, CFA-Leu, CFA-Val, CFA-Met and CFA-Ala could not inhibit the root length and restoration of fertility in coi1-1 mutants.	RNI-like superfamily protein;(source:Araport11)
AT2G40020.1	protein_coding	Nucleolar histone methyltransferase-related protein		Nucleolar histone methyltransferase-related protein;(source:Araport11)
AT2G39950.1	protein_coding			flocculation protein;(source:Araport11)
AT2G40030.1	protein_coding	nuclear RNA polymerase D1B	Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit.  Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing. The nrpe1 mutant is more resistant to biotrophic pathogens and is primed to activate salicylic acid-dependent defence genes.	nuclear RNA polymerase D1B;(source:Araport11)
AT2G39890.1	protein_coding	proline transporter 1	Encodes a proline transporter with affinity for gly betaine, proline and GABA.  Protein is expressed in the vascular tissue, specifically the phloem.	proline transporter 1;(source:Araport11)
AT2G39960.1	protein_coding	Microsomal signal peptidase 25 kDa subunit (SPC25)		Microsomal signal peptidase 25 kDa subunit (SPC25);(source:Araport11)
AT2G39900.1	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT2G39970.1	protein_coding	Mitochondrial substrate carrier family protein	Encodes peroxisomal membrane protein 38 (PMP38). Mutation in this protein results in enlargement of peroxisomes. Delivers NAD+ for optimal fatty acid degradation during storage oil mobilization.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT2G40050.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G39910.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT2G39980.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT2G40060.1	protein_coding	Clathrin light chain protein	Encodes a clathrin that is localized to the cortical division zone and the cell plate and colocalizes with TPLATE during cell plate anchoring. The mRNA is cell-to-cell mobile.	Clathrin light chain protein;(source:Araport11)
AT2G39920.1	protein_coding	HAD superfamily, subfamily IIIB acid phosphatase 		HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT2G39990.1	protein_coding	eukaryotic translation initiation factor 2	translation initiation factor eIF2 p47 subunit homolog	eukaryotic translation initiation factor 2;(source:Araport11)
AT2G40070.1	protein_coding		Encodes a microtubule-associated protein.	flocculation FLO11-like protein;(source:Araport11)
AT2G39930.1	protein_coding	isoamylase 1	Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex.	isoamylase 1;(source:Araport11)
AT2G40000.1	protein_coding	ortholog of sugar beet HS1 PRO-1 2		ortholog of sugar beet HS1 PRO-1 2;(source:Araport11)
AT2G40080.1	protein_coding	Protein of unknown function (DUF1313)	Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression.  ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.  It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.	EARLY FLOWERING-like protein (DUF1313);(source:Araport11)
AT2G40010.1	protein_coding	Ribosomal protein L10 family protein		Ribosomal protein L10 family protein;(source:Araport11)
AT2G31360.1	protein_coding	16:0delta9 desaturase 2	Encodes a protein homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature.  It is involved in the synthesis of the 24:1n-9 and 26:1n-9 components of seed lipids, sphingolipids and the membrane phospholipids phosphatidylserine (PS), and phosphatidylethanolamine (PE).	16:0delta9 desaturase 2;(source:Araport11)
AT2G31440.1	protein_coding		Encodes a gamma-secretase subunit.  Associates with other subunits in intracellular membrane compartments.	gamma-secretase subunit APH1-like protein;(source:Araport11)
AT2G31350.1	protein_coding	glyoxalase 2-5	Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II).	glyoxalase 2-5;(source:Araport11)
AT2G31430.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT2G31420.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein (DUF313);(source:Araport11)
AT2G31410.1	protein_coding			coiled-coil protein;(source:Araport11)
AT2G31400.1	protein_coding	genomes uncoupled 1	Encodes a a chloroplast-localized pentatricopeptide-repeat protein involved in regulation of nuclear gene expression.	s uncoupled 1;(source:Araport11)
AT2G31480.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G31390.1	protein_coding	pfkB-like carbohydrate kinase family protein	Encodes a member of the fructokinase gene family.  Nomenclature according to Riggs 2017 has been adopted for the family by the community (personal communication, Boernke, Callis, Granot, Boernke, and Smeekens).	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT2G31470.1	protein_coding	F-box and associated interaction domains-containing protein	Encodes a F-Box protein DOR (Drought tolerance Repressor) functionally as an inhibitory factor for abscisic acid-induced stomatal closure under drought stress.	F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G31380.1	protein_coding	salt tolerance homologue	a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.	salt tolerance homologue;(source:Araport11)
AT2G31460.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein, putative (DUF313);(source:Araport11)
AT2G31370.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G31450.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT2G23860.1	pseudogene			pseudogene of PapD-like superfamily protein;(source:Araport11)
AT2G24050.1	protein_coding	MIF4G domain-containing protein / MA3 domain-containing protein	Encodes a putative eukaryotic translation initiation factor.	MIF4G domain-containing protein / MA3 domain-containing protein;(source:Araport11)
AT2G23870.1	pseudogene			pseudogene of Terpenoid cyclases family protein;(source:Araport11)
AT2G24060.1	protein_coding	Translation initiation factor 3 protein	SUPPRESSOR OF VARIEGATION9 (SVR9),encodes a chloroplast-localized prokaryotic type translation initiation factor 3. Mutant plants shows both chloroplast development defect, and a series of leaf developmental abnormalities including more serrated leaf margin, disorganized mesophyll cells, and altered cotyledon venation patterns.	Translation initiation factor 3 protein;(source:Araport11)
AT2G23880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.4e-41 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G23890.1	protein_coding	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase		HAD-superfamily hydrolase, subfamily IG, 5-nucleotidase;(source:Araport11)
AT2G23900.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G23980.1	protein_coding	cyclic nucleotide-gated channel 6	Encodes a cyclic GMP-activated non-selective cation channel in the plasma membrane of guard cells.	cyclic nucleotide-gated channel 6;(source:Araport11)
AT2G23990.1	protein_coding	early nodulin-like protein 11		early nodulin-like protein 11;(source:Araport11)
AT2G23910.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G24070.1	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT2G23820.1	protein_coding	Metal-dependent phosphohydrolase		Metal-dependent phosphohydrolase;(source:Araport11)
AT2G24080.1	protein_coding	Protein of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT2G24000.1	protein_coding	serine carboxypeptidase-like 22		serine carboxypeptidase-like 22;(source:Araport11)
AT2G23930.1	protein_coding	probable small nuclear ribonucleoprotein G		Putative small nuclear ribonucleoprotein G;(source:Araport11)
AT2G23940.1	protein_coding	Protein of unknown function (DUF788)		transmembrane protein (DUF788);(source:Araport11)
AT2G24010.1	protein_coding	serine carboxypeptidase-like 23		serine carboxypeptidase-like 23;(source:Araport11)
AT2G23830.1	protein_coding	PapD-like superfamily protein		PapD-like superfamily protein;(source:Araport11)
AT2G23950.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes an LLR receptor kinase that is expressed in protophloem and is required for CLE peptide sensing in roots. One of a group of LRR-RLKs, designated as CLAVATA3 INSENSITIVE RECEPTOR KINASES (CIKs), that acts as a co-regulator and has essential roles in regulating CLV3-mediated stem cell homeostasis.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G24020.1	protein_coding	Uncharacterised BCR, YbaB family COG0718	STIC2 was identifided in a screen for suppressors of  chloroplast protein import defect  in tic40.	Putative BCR, YbaB family COG0718;(source:Araport11)
AT2G23840.1	protein_coding	HNH endonuclease		HNH endonuclease;(source:Araport11)
AT2G23960.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein		Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT2G24030.1	protein_coding	zinc ion binding;nucleic acid binding		zinc ion binding / nucleic acid binding protein;(source:Araport11)
AT2G23850.1	pseudogene			pseudogene of uricase / urate oxidase / nodulin 35;(source:Araport11)
AT2G23970.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein		Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT2G24040.1	protein_coding	Low temperature and salt responsive protein family		Low temperature and salt responsive protein family;(source:Araport11)
AT2G34730.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT2G34690.1	protein_coding	Glycolipid transfer protein (GLTP) family protein	Gene product transports the glycolipid precursor sphingosine between membranes in vitro.  Mutant constitutively expresses defense-related genes that accompany the hypersensitive response normally triggered by avirulent pathogens. The mRNA is cell-to-cell mobile.	Glycolipid transfer protein (GLTP) family protein;(source:Araport11)
AT2G34720.1	protein_coding	nuclear factor Y, subunit A4		nuclear factor Y, subunit A4;(source:Araport11)
AT2G34680.1	protein_coding	Outer arm dynein light chain 1 protein	isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.	Outer arm dynein light chain 1 protein;(source:Araport11)
AT2G34710.1	protein_coding	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein	Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA.	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein;(source:Araport11)
AT2G34670.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		benzoyl-CoA reductase subunit C, putative (DUF630 and DUF632);(source:Araport11)
AT2G34700.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT2G34660.1	protein_coding	multidrug resistance-associated protein 2	encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump.  An ABCC-type arsenite-phytochelatin transporter. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. The mRNA is cell-to-cell mobile.	multidrug resistance-associated protein 2;(source:Araport11)
AT2G34770.1	protein_coding	fatty acid hydroxylase 1	encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.	fatty acid hydroxylase 1;(source:Araport11)
AT2G34760.1	pseudogene			pseudogene of tubulin beta-9 chain;(source:Araport11)
AT2G34750.1	protein_coding	RNA polymerase I specific transcription initiation factor RRN3 protein		RNA polymerase I specific transcription initiation factor RRN3 protein;(source:Araport11)
AT2G34740.1	protein_coding	Protein phosphatase 2C family protein		protein phosphatase 2C family protein;(source:Araport11)
AT2G20190.1	protein_coding	CLIP-associated protein	Encodes a microtubule-associated protein that is involved in both cell division and cell expansion.  It likely promotes microtubule stability.	CLIP-associated protein;(source:Araport11)
AT2G20020.1	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	Promotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns.	RNA-binding CRS1 / YhbY (CRM) domain-containing protein;(source:Araport11)
AT2G20100.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G20010.1	protein_coding	Protein of unknown function (DUF810)		Gls protein (DUF810);(source:Araport11)
AT2G20150.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G20080.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G20180.1	protein_coding	phytochrome interacting factor 3-like 5	Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark.  It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls.  Light reduces this activity in a phy-dependent manner.  The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis.  It also negatively regulates GA3 oxidase expression.	phytochrome interacting factor 3-like 5;(source:Araport11)
AT2G20140.1	protein_coding	AAA-type ATPase family protein	Encodes one of the two RPT2 (26S proteasome subunit RPT2) paralogs: RPT2a (At4g29040) and RPT2b (At2g20140).  RPT2b can not complement the rpt2a mutant phenotype.  rpt2a rpt2b double mutants are embryo lethal.	AAA-type ATPase family protein;(source:Araport11)
AT2G20070.1	protein_coding			defensin-like protein;(source:Araport11)
AT2G20000.1	protein_coding	CDC27  family protein	Required for cell division and cell differentiation in meristems. Encodes a homolog of the CDC27 subunit of the anaphase-promoting complex (APC). Unlike other CDC27 homologs in Arabidopsis, its transcription is cell cycle regulated. Strong hbt mutants give rise to seedlings that lack an anatomically recognizable quiescent center and differentiated columella root cap cells, the cell types derived from the wild-type hypophysis. Furthermore, they have no mitotically active root meristem and lack a differentiated lateral root cap.	CDC27 family protein;(source:Araport11)
AT2G20130.1	protein_coding	like COV 1		like COV 1;(source:Araport11)
AT2G20060.1	protein_coding	Ribosomal protein L4/L1 family		Ribosomal protein L4/L1 family;(source:Araport11)
AT2G19990.1	protein_coding	pathogenesis-related protein-1-like	Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis.  Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like.  Expression of this gene is not salicylic-acid responsive.	pathogenesis-related protein-1-like protein;(source:Araport11)
AT2G20120.1	protein_coding	Protein of unknown function (DUF502)	Encodes an integral membrane protein of unknown function, highly conserved between plants and bacteria; is likely to be involved in a mechanism that negatively regulates the differentiation of vascular tissue in the stem.  Mutants display a dramatic increase in vascular tissue development in the stem in place of the interfascicular region that normally separates the vascular bundles.	CONTINUOUS VASCULAR RING protein (DUF502);(source:Araport11)
AT2G20050.1	protein_coding	protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases		protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein;(source:Araport11)
AT2G19980.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT2G20110.1	protein_coding	Tesmin/TSO1-like CXC domain-containing protein		Tesmin/TSO1-like CXC domain-containing protein;(source:Araport11)
AT2G19970.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT2G20030.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G20170.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT2G20160.1	protein_coding	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein		E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein;(source:Araport11)
AT2G37110.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT2G37210.1	protein_coding	lysine decarboxylase family protein	Encodes a protein of unknown function.  It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.	lysine decarboxylase family protein;(source:Araport11)
AT2G37100.1	protein_coding	protamine P1 family protein		protamine P1 family protein;(source:Araport11)
AT2G37200.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT2G37090.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	The IRX9 gene encodes a putative family 43 glycosyl transferase.  It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation.  Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis.IRX9 was identified as MUCI65 in a reverse genetic screen for MUCILAGE-RELATED genes. Despite producing only a few seeds, the irx9-1 mutant displays normal mucilage properties.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT2G37190.1	protein_coding	Ribosomal protein L11 family protein		Ribosomal protein L11 family protein;(source:Araport11)
AT2G37080.1	protein_coding	ROP interactive partner 3	Encodes RIP2 (ROP interactive partner 2), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants).	ROP interactive partner 3;(source:Araport11)
AT2G37180.1	protein_coding	Aquaporin-like superfamily protein	a member of the plasma membrane intrinsic protein PIP2. functions as aquaporin and is involved in desiccation.	Aquaporin-like superfamily protein;(source:Araport11)
AT2G37070.1	protein_coding		Encodes a microtubule-associated protein track growing microtubule plus ends.	TRIO/F-actin-binding protein;(source:Araport11)
AT2G37170.1	protein_coding	plasma membrane intrinsic protein 2	a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev	plasma membrane intrinsic protein 2;(source:Araport11)
AT2G37160.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G37140.1	protein_coding	Terpenoid synthases superfamily protein		Terpenoid synthases superfamily protein;(source:Araport11)
AT2G37060.1	protein_coding	nuclear factor Y, subunit B8		nuclear factor Y, subunit B8;(source:Araport11)
AT2G37130.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G37150.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G37120.1	protein_coding	S1FA-like DNA-binding protein		S1FA-like DNA-binding protein;(source:Araport11)
AT2G40470.1	protein_coding	LOB domain-containing protein 15	LOB-domain containing protein. Involved in regulation of xylem differentiation- acts as a regulator of VND7 which is a master regulator of xylem cell differentiation.	LOB domain-containing protein 15;(source:Araport11)
AT2G40550.1	protein_coding	E2F target gene 1	Encodes a nuclear localized target of E2Fa-DPa, transcription factors controlling cell cycle progression. Required for sister chromatid cohesion and DNA repair.	E2F target protein 1 (ETG1);(source:Araport11)
AT2G40540.1	protein_coding	potassium transporter 2	putative potassium transporter AtKT2p (AtKT2) mRNA,	potassium transporter 2;(source:Araport11)
AT2G40460.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G40580.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G40530.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G40630.1	protein_coding	Uncharacterised conserved protein (UCP030365)		Uncharacterized conserved protein (UCP030365);(source:Araport11)
AT2G40570.1	protein_coding	initiator tRNA phosphoribosyl transferase family protein		initiator tRNA phosphoribosyl transferase family protein;(source:Araport11)
AT2G40520.1	protein_coding	Nucleotidyltransferase family protein		Nucleotidyltransferase family protein;(source:Araport11)
AT2G40450.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT2G40560.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G40510.1	protein_coding	Ribosomal protein S26e family protein		Ribosomal protein S26e family protein;(source:Araport11)
AT2G40500.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G40490.1	protein_coding	Uroporphyrinogen decarboxylase		Uroporphyrinogen decarboxylase;(source:Araport11)
AT2G40620.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G40480.1	protein_coding	Plant protein of unknown function (DUF827)		WEB family protein (DUF827);(source:Araport11)
AT2G40610.1	protein_coding	expansin A8	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A8;(source:Araport11)
AT2G40600.1	protein_coding	appr-1-p processing enzyme family protein		appr-1-p processing enzyme family protein;(source:Araport11)
AT2G40590.1	protein_coding	Ribosomal protein S26e family protein		Ribosomal protein S26e family protein;(source:Araport11)
AT2G47600.1	protein_coding	magnesium/proton exchanger	Encodes a magnesium/proton exchanger, member of putative Na+/Ca2+ antiporter gene family	magnesium/proton exchanger;(source:Araport11)
AT2G47520.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. It plays a role in hypoxia-induced root slanting.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G47590.1	protein_coding	photolyase/blue-light receptor 2	photolyase/blue light photoreceptor PHR2 (PHR2) mRNA,	photolyase/blue-light receptor 2;(source:Araport11)
AT2G47510.1	protein_coding	fumarase 1	Encodes a mitochondrial-localized protein. The FUM1 gene appears to be essential, suggesting that FUM1 may play a crucial role as a fumarase in the tricarboxylic acid cycle.	fumarase 1;(source:Araport11)
AT2G47430.1	protein_coding	Signal transduction histidine kinase	Encodes a putative plasma membrane-bound hybrid histidine kinase and cytokinin sensor that is expressed within the female gametophyte.	Signal transduction histidine kinase;(source:Araport11)
AT2G47580.1	protein_coding	spliceosomal protein U1A	encodes spliceosomal protein U1A	spliceosomal protein U1A;(source:Araport11)
AT2G47420.1	protein_coding	Ribosomal RNA adenine dimethylase family protein	Encodes a putative rRNA dimethyltransferase.	Ribosomal RNA adenine dimethylase family protein;(source:Araport11)
AT2G47570.1	protein_coding	Ribosomal protein L18e/L15 superfamily protein		60S ribosomal protein L18;(source:Araport11)
AT2G47500.1	protein_coding	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain		P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT2G47490.1	protein_coding	NAD+ transporter 1	Encodes a chloroplast-localized NAD+ transporter that transports NAD+ in a counter exchange mode with ADP and AMP in vitro.	NAD+ transporter 1;(source:Araport11)
AT2G47560.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G47550.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT2G47480.1	protein_coding	Protein of unknown function (DUF3511)		DUF3511 domain protein, putative (DUF3511);(source:Araport11)
AT2G47540.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT2G47470.1	protein_coding	thioredoxin family protein	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response. The mRNA is cell-to-cell mobile.	thioredoxin family protein;(source:Araport11)
AT2G47530.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT2G47460.1	protein_coding	myb domain protein 12	"MYB12 belongs to subgroup 7 of the R2R3-MYB family. It strongly activates the promoters of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), flavonol synthase (FLS) and - to a lesser extent - chalcone flavanone isomerase (CHI), but cannot activate the promoters of flavonoid-3'hydroxylase (F3'H) and dihydroflavonol 4-reductase (DF). The activation requires a functional MYB recognition element (MRE). Results from the myb12-1f allele indicate that an activation domain might be present in the C-terminus. Overexpression or knock-out plants do not show any obvious phenotype under greenhouse conditions. Young myb12-ko seedlings contain reduced amounts of flavonoids (quercetin and kaempferol), while seedlings as well as leaves of MYB12-OX plants displayed an increased flavonoid content. They did not show any significant difference in anthocyanin content. Expression of CHS and FLS shows a clear correlation to MYB12 expression levels. CHI and F3H show increased transcript levels in the MYB12-OX lines, but no differences in the knock-out. Even in the absence of functional MYB12, flavonol biosynthesis is not completely absent, suggesting functional redundancy. " The redundant factors are MYB11 and MYB111 although MYB12 is primarily required for flavonol biosynthesis in roots. Mutations in MYB12 block both auxin and ethylene stimulation of flavonoid synthesis.	myb domain protein 12;(source:Araport11)
AT2G47450.1	protein_coding	chloroplast signal recognition particle component (CAO)	A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting.  It is downregulated in response to high light. It recognizes the DPLG motif in Lhcb1. The mRNA is cell-to-cell mobile.	chloroplast signal recognition particle component (CAO);(source:Araport11)
AT2G47440.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G47610.1	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT2G18390.1	protein_coding	ADP-ribosylation factor family protein	Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.  Mutant has abnormal mitosis and cell cycle control during seed development.	ADP-ribosylation factor family protein;(source:Araport11)
AT2G18300.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G18380.1	protein_coding	GATA transcription factor 20	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 20;(source:Araport11)
AT2G18290.1	protein_coding	anaphase promoting complex 10	Encodes APC10 (anaphase promoting complex 10).  Overexpression of APC10 likely mimics auxin and ethylene sensitive phenotypes. Plays an essential role in cell proliferation during leaf development.	anaphase promoting complex 10;(source:Araport11)
AT2G18370.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G18280.1	protein_coding	tubby like protein 2	Member of TLP family The mRNA is cell-to-cell mobile.	tubby like protein 2;(source:Araport11)
AT2G18360.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G18460.1	protein_coding	like COV 3		like COV 3;(source:Araport11)
AT2G18270.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G18350.1	protein_coding	homeobox protein 24		homeobox protein 24;(source:Araport11)
AT2G18450.1	protein_coding	succinate dehydrogenase 1-2	Nuclear encoded mitochondrial flavoprotein subunit of succinate dehydrogenase complex .	succinate dehydrogenase 1-2;(source:Araport11)
AT2G18260.1	protein_coding	syntaxin of plants 112	member of SYP11 Gene Family	syntaxin of plants 112;(source:Araport11)
AT2G18340.1	protein_coding	late embryogenesis abundant domain-containing protein / LEA domain-containing protein		late embryogenesis abundant domain-containing protein / LEA domain-containing protein;(source:Araport11)
AT2G18440.1	other_rna	GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15); other RNA	Encodes a noncoding RNA, a member of an emerging class of transcripts that lack significant open reading frames and encode RNA as their final product. Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT2G18250.1	protein_coding	4-phosphopantetheine adenylyltransferase	At2g18250 encodes pantetheine-phosphate adenylyltransferase catalyzing the formation of  dephospho-CoA from pantetheine 4'-phosphate. The enzyme is involved in coenzyme A biosynthesis.	4-phosphopantetheine adenylyltransferase;(source:Araport11)
AT2G18330.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT2G18420.1	protein_coding	Gibberellin-regulated family protein	Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein	Gibberellin-regulated family protein;(source:Araport11)
AT2G18320.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G18240.1	protein_coding	Rer1 family protein		Rer1 family protein;(source:Araport11)
AT2G18410.1	protein_coding			elongator complex protein;(source:Araport11)
AT2G18230.1	protein_coding	pyrophosphorylase 2	Encodes a protein that might have inorganic pyrophosphatase activity.	pyrophosphorylase 2;(source:Araport11)
AT2G18400.1	protein_coding	ribosomal protein L6 family protein		ribosomal protein L6 family protein;(source:Araport11)
AT2G18220.1	protein_coding	Noc2p family		Noc2p family;(source:Araport11)
AT2G22770.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G22780.1	protein_coding	peroxisomal NAD-malate dehydrogenase 1	encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.	peroxisomal NAD-malate dehydrogenase 1;(source:Araport11)
AT2G22790.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G34650.1	protein_coding	Protein kinase superfamily protein	Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs.  Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining  the proper subcellular localization of PID.	Protein kinase superfamily protein;(source:Araport11)
AT2G34560.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G34640.1	protein_coding	plastid transcriptionally active 12	Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.	plastid transcriptionally active 12;(source:Araport11)
AT2G34540.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G34530.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G34570.1	protein_coding	PIN domain-like family protein		PIN domain-like family protein;(source:Araport11)
AT2G34520.1	protein_coding	mitochondrial ribosomal protein S14	nuclear-encoded mitochondrial ribosomal protein S14	mitochondrial ribosomal protein S14;(source:Araport11)
AT2G34630.1	protein_coding	geranyl diphosphate synthase 1	Encodes a geranyl diphosphate synthase. RNAi lines are dwarf. T-DNA knock-out lines are embryo lethal.	geranyl diphosphate synthase 1;(source:Araport11)
AT2G34510.1	protein_coding	Protein of unknown function, DUF642		choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT2G34620.1	protein_coding	Mitochondrial transcription termination factor family protein	Mitochondrial transcription termination factor family member.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT2G34610.1	protein_coding			cotton fiber protein;(source:Araport11)
AT2G34600.1	protein_coding	jasmonate-zim-domain protein 7		jasmonate-zim-domain protein 7;(source:Araport11)
AT2G34590.1	protein_coding	Transketolase family protein		Transketolase family protein;(source:Araport11)
AT2G34580.1	protein_coding			cytomegalovirus UL139 protein;(source:Araport11)
AT2G35330.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G35410.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G35480.1	protein_coding			envelope glycoprotein;(source:Araport11)
AT2G35470.1	protein_coding			ribosome maturation factor;(source:Araport11)
AT2G35580.1	protein_coding	Serine protease inhibitor (SERPIN) family protein		Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT2G35390.1	protein_coding	Phosphoribosyltransferase family protein		Phosphoribosyltransferase family protein;(source:Araport11)
AT2G35460.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT2G35570.1	pseudogene			pseudogene of Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT2G35380.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G35450.1	protein_coding	catalytics;hydrolases		catalytic/ hydrolase;(source:Araport11)
AT2G35370.1	protein_coding	glycine decarboxylase complex H	Encodes glycine decarboxylase complex H protein. Involved in photorespiration. The mRNA is cell-to-cell mobile.	glycine decarboxylase complex H;(source:Araport11)
AT2G35550.1	protein_coding	basic pentacysteine 7		basic pentacysteine 7;(source:Araport11)
AT2G35360.1	protein_coding	ubiquitin family protein		ubiquitin family protein;(source:Araport11)
AT2G35540.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT2G35530.1	protein_coding	basic region/leucine zipper transcription factor 16	Encodes a G group bZIP transcription factor family member that can bind cis elements with an ACGT core, such as G-box, Hex, C-box and As-1.  The protein is localized in the nucleus and can homodimerize and can heterodimerize with other G group members.	basic region/leucine zipper transcription factor 16;(source:Araport11)
AT2G35520.1	protein_coding	Defender against death (DAD family) protein		Defender against death (DAD family) protein;(source:Araport11)
AT2G35510.1	protein_coding	similar to RCD one 1	Encodes a WWE domain-containing protein with 76% similarity to RCD1.  The protein also contains a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule.  Its presence suggests a role for the protein in ADP ribosylation.	similar to RCD one 1;(source:Araport11)
AT2G35430.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT2G35350.1	protein_coding	poltergeist like 1	Encodes a protein most similar to the POLTERGEIST locus. Double mutant analysis of loss of function alleles indicate PLL1 functions redundantly with POL to regulate meristem size and pedicel length. Acts in a dose dependent manner with POL to suppress the clv1, clv2 and clv3 phenotypes.	poltergeist like 1;(source:Araport11)
AT2G35500.1	protein_coding	shikimate kinase like 2	Encodes a protein with some sequence similarity to shikimate kinases, but a truncated form of this protein (lacking a putative N-terminal chloroplast transit peptide) does not have shikimate kinase activity in vitro.	shikimate kinase like 2;(source:Araport11)
AT2G35340.1	protein_coding	helicase domain-containing protein		helicase domain-containing protein;(source:Araport11)
AT2G35490.1	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT2G35420.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G32300.1	protein_coding	uclacyanin 1	Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods.	uclacyanin 1;(source:Araport11)
AT2G32380.1	protein_coding	Transmembrane protein 97, predicted		Transmembrane protein 97, Putative;(source:Araport11)
AT2G32290.1	protein_coding	beta-amylase 6		beta-amylase 6;(source:Araport11)
AT2G32370.1	protein_coding	homeodomain GLABROUS 3	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  Together with ATML1 and PDF2, it is involved in cotyledon development.	homeodomain GLABROUS 3;(source:Araport11)
AT2G32430.1	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT2G32360.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT2G32280.1	protein_coding	Protein of unknown function (DUF1218)	Encodes a member of a plant-specific gene family that is required for embryo provasculature development.  The gene product regulates vascular network complexity and connectivity in cotyledons.	GPI inositol-deacylase C, putative (DUF1218);(source:Araport11)
AT2G32350.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT2G32410.1	protein_coding	AXR1-like		AXR1-like protein;(source:Araport11)
AT2G32270.1	protein_coding	zinc transporter 3 precursor	A member of Zrt- and Irt-related protein (ZIP) family.  transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.	zinc transporter 3 precursor;(source:Araport11)
AT2G32340.1	protein_coding	TraB family protein		TraB family protein;(source:Araport11)
AT2G32400.1	protein_coding	glutamate receptor 5	Glr5	glutamate receptor 5;(source:Araport11)
AT2G32260.1	protein_coding	phosphorylcholine cytidylyltransferase		phosphorylcholine cytidylyltransferase;(source:Araport11)
AT2G32390.1	protein_coding	glutamate receptor  3.5	Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family.	glutamate receptor 3.5;(source:Araport11)
AT2G32250.1	protein_coding	FAR1-related sequence 2		FAR1-related sequence 2;(source:Araport11)
AT2G32320.1	protein_coding	tRNAHis guanylyltransferase	Interacts genetically with its homolog ICA1; alters growth and flowering time plasticity in relation to temperature. Mutants display effects on growth, flowering and plant development, and ploidy level depending on ambient temperature (effects specific at >27C).	tRNAHis guanylyltransferase;(source:Araport11)
AT2G32310.1	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT2G32440.1	protein_coding	ent-kaurenoic acid hydroxylase 2	ent-kaurenoic acid hydroxylase (KAO2)	ent-kaurenoic acid hydroxylase 2;(source:Araport11)
AT2G41580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.7e-42 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G41660.1	protein_coding	Protein of unknown function, DUF617	Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.	MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT2G41590.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT2G41670.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes SIN2 (SHORT INTEGUMENTS 2), a mitochondrial DAR GTPase. SIN2 is hypothesized to function in mitochondrial ribosome assembly. sin2 mutants produce ovules with short integuments due to early cessation of cell division in these structures.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G41550.1	protein_coding	Rho termination factor		Rho termination factor;(source:Araport11)
AT2G41600.1	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT2G41560.1	protein_coding	autoinhibited Ca(2+)-ATPase, isoform 4	Encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. Localized to the vacuole. Lesion mimic phenotype when mutation in the gene is combined with a mutation in ACA11.  Lesion mimic phenotype of double knockout can be suppressed by nutritional supplements that increase anion levels (e.g. 15 mM Nitrate, Chloride, or Phosphate).	autoinhibited Ca(2+)-ATPase, isoform 4;(source:Araport11)
AT2G41610.1	protein_coding		Transmembrane protein from a plant specific gene family. Overexpression causes abnormal cell wall composition and defects in cell growth.	transmembrane protein;(source:Araport11)
AT2G41680.1	protein_coding	NADPH-dependent thioredoxin reductase C	Encodes a NADPH thioredoxin reductase involved in chloroplast protection against oxidative damage.	NADPH-dependent thioredoxin reductase C;(source:Araport11)
AT2G41570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16690.1);(source:TAIR10)
AT2G41620.1	protein_coding	Nucleoporin interacting component (Nup93/Nic96-like) family protein		Nucleoporin interacting component (Nup93/Nic96-like) family protein;(source:Araport11)
AT2G41690.1	protein_coding	heat shock transcription factor B3	member of Heat Stress Transcription Factor (Hsf) family	heat shock transcription factor B3;(source:Araport11)
AT2G41630.1	protein_coding	transcription factor IIB	Encodes a transcription factor, TFIIB1, that plays important roles in pollen tube growth, guidance, and reception as well as endosperm development and is partially functionally different from AtTFIIB2 and AtTFIIB3/AtpBRP2.	transcription factor IIB;(source:Araport11)
AT2G41640.1	protein_coding	Glycosyltransferase family 61 protein		Glycosyltransferase family 61 protein;(source:Araport11)
AT2G41510.1	protein_coding	cytokinin oxidase/dehydrogenase 1	It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase/dehydrogenase 1;(source:Araport11)
AT2G41650.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G41520.1	protein_coding	Heat shock protein DnaJ with tetratricopeptide repeat	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Heat shock protein DnaJ with tetratricopeptide repeat-containing protein;(source:Araport11)
AT2G41530.1	protein_coding	S-formylglutathione hydrolase	Encodes a protein with S-formylglutathione hydrolase activity.	S-formylglutathione hydrolase;(source:Araport11)
AT2G41540.1	protein_coding	6-phosphogluconate dehydrogenase family protein	Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene.	6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT2G46670.1	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT2G46680.1	protein_coding	homeobox 7	encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined.  Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response.	homeobox 7;(source:Araport11)
AT2G46690.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT2G46700.1	protein_coding	CDPK-related kinase 3		CDPK-related kinase 3;(source:Araport11)
AT2G46710.1	protein_coding	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain	ROP (Rho of plant GTPases) family member Involved in cell wall patterning. Encodes ROP inactivator, regulates the formation of ROP-activated domains; these in turn determined the pattern of cell wall pits. Positively regulates pit formation, but negatively regulates pit size, required for periodic formation of secondary cell wall pits.	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein;(source:Araport11)
AT2G46720.1	protein_coding	3-ketoacyl-CoA synthase 13	Encodes KCS13, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 13;(source:Araport11)
AT2G28280.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G28230.1	protein_coding	TATA-binding related factor (TRF) of subunit 20 of Mediator complex	Encodes one of the subunits of the head domain of the MEDIATOR complex. The complex conveys transcriptional signals by acting as an intermediary between transcription factors and RNA polymerase II. Together with MED18, MED20 is proposed to control the balance of salicylic acid and jasmonate associated defense pathways. It is involved in miRNA biogenesis by recruiting Pol II to promoters of miRNA genes.	TATA-binding related factor (TRF) of subunit 20 of Mediator complex;(source:Araport11)
AT2G28270.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G28220.1	protein_coding	Eukaryotic aspartyl protease family protein		aspartic proteinase CDR1-like protein;(source:Araport11)
AT2G28260.1	protein_coding	cyclic nucleotide-gated channel 15	member of Cyclic nucleotide gated channel family	cyclic nucleotide-gated channel 15;(source:Araport11)
AT2G28210.1	protein_coding	alpha carbonic anhydrase 2		alpha carbonic anhydrase 2;(source:Araport11)
AT2G28250.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G28240.1	protein_coding	ATP-dependent helicase family protein		ATP-dependent helicase family protein;(source:Araport11)
AT2G46250.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT2G46170.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT2G46240.1	protein_coding	BCL-2-associated athanogene 6	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Expression of BAG6 in leaves was strongly induced by heat stress. Knockout mutants exhibited enhanced susceptibility to fungal pathogen Botrytis cinerea. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. The mRNA is cell-to-cell mobile.	BCL-2-associated athanogene 6;(source:Araport11)
AT2G46160.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G46070.1	protein_coding	mitogen-activated protein kinase 12	Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants.	mitogen-activated protein kinase 12;(source:Araport11)
AT2G46230.1	protein_coding	PIN domain-like family protein		PIN domain-like family protein;(source:Araport11)
AT2G46060.1	protein_coding	transmembrane protein-related		transmembrane protein-like protein;(source:Araport11)
AT2G46220.1	protein_coding	Uncharacterized conserved protein (DUF2358)		DUF2358 family protein (DUF2358);(source:Araport11)
AT2G46150.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT2G46210.1	protein_coding	Fatty acid/sphingolipid desaturase		Fatty acid/sphingolipid desaturase;(source:Araport11)
AT2G46140.1	protein_coding	Late embryogenesis abundant protein		Late embryogenesis abundant protein;(source:Araport11)
AT2G46050.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein	E-PPR protein involved in mitochondrial RNA editing.It is involved in editing of the mitochondrial tatC transcript at site 581.	Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT2G46200.1	protein_coding			U11/U12 small nuclear ribonucleoprotein;(source:Araport11)
AT2G46130.1	protein_coding	WRKY DNA-binding protein 43	member of WRKY Transcription Factor; Group II-c	WRKY DNA-binding protein 43;(source:Araport11)
AT2G46310.1	protein_coding	cytokinin response factor 5	CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors.  CRF proteins rapidly relocalize to the nucleus in response to cytokinin.  Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.	cytokinin response factor 5;(source:Araport11)
AT2G46040.1	protein_coding	ARID/BRIGHT DNA-binding domain;ELM2 domain protein	Encodes a transcriptional activator that is involved in pollen development. ARID1 is expressed in nuclear bodies of microspore, vegetative and generative cells, and binds to and activates DUO during microgametogenesis.	ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein;(source:Araport11)
AT2G46190.1	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT2G46110.1	protein_coding	ketopantoate hydroxymethyltransferase 1	Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.	ketopantoate hydroxymethyltransferase 1;(source:Araport11)
AT2G46300.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT2G46030.1	protein_coding	ubiquitin-conjugating enzyme 6	Ubiquitin conjugating enzyme E2	ubiquitin-conjugating enzyme 6;(source:Araport11)
AT2G46180.1	protein_coding	golgin candidate 4	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast.  A fluorescently-tagged version of GC4 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (169 aa) portion of the protein.	golgin Putative 4;(source:Araport11)
AT2G46100.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein		Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT2G46290.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G46020.1	protein_coding	transcription regulatory protein SNF2, putative	Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.	transcription regulatory protein SNF2;(source:Araport11)
AT2G46090.1	protein_coding	Diacylglycerol kinase family protein	Encodes a putative sphingosine kinase (SphK) containing the five conserved domains (C1-C5) previously identified in SphKs.	Diacylglycerol kinase family protein;(source:Araport11)
AT2G46280.1	protein_coding	TGF-beta receptor interacting protein 1	Encodes a homolog of mammalian TGF-beta receptor interacting protein.  Co-immunoprecipitates with BRI1 and can be phosphorylated in vitro by BRI1 at specific sites (Thr-14, Thr-89, and either Thr-197 or Ser-198).  May therefore be a cytoplasmic BRI1 substrate and involved in brassinosteroid regulated plant growth and development.The encoded protein has two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	TGF-beta receptor interacting protein 1;(source:Araport11)
AT2G46080.1	protein_coding		Encodes a protein related to BYPASS1 (BPS1).  Regulates production of mobile compound: bps signal.	BPS1-like protein;(source:Araport11)
AT2G46270.1	protein_coding	G-box binding factor 3	encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3¡¯s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2.	G-box binding factor 3;(source:Araport11)
AT2G46260.1	protein_coding	BTB/POZ/Kelch-associated protein	Involvement in protein ubiquitylation is predicted based on physical interaction with CULLIN 3 proteins.	BTB/POZ/Kelch-associated protein;(source:Araport11)
AT2G40410.1	protein_coding	Staphylococcal nuclease homologue	Encodes a Ca(2+)-dependent nuclease that can degrade both DNA and RNA.	Ca(2+)-dependent nuclease family protein;(source:Araport11)
AT2G40420.1	protein_coding	Transmembrane amino acid transporter family protein	Encodes a putative amino acid transporter.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT2G40350.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G40360.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes BOP1, an ortholog of Block of cell proliferation (BOP) protein. A T-DNA null allele of the BOP1 gene is lethal, and a 50% decrease in transcript accumulation is sufficient to cause severe developmental defects linked to defective cell division.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G40370.1	protein_coding	laccase 5	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	laccase 5;(source:Araport11)
AT2G40380.1	protein_coding	prenylated RAB acceptor 1.B2		prenylated RAB acceptor 1.B2;(source:Araport11)
AT2G40390.1	protein_coding			neuronal PAS domain protein;(source:Araport11)
AT2G40400.1	protein_coding	Protein of unknown function (DUF399 and DUF3411)	Encodes a chloroplast localized protein of unknown function that is involved in regulation of chloroplast development.	DUF399 family protein, putative (DUF399 and DUF3411);(source:Araport11)
AT2G41170.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G40990.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT2G41060.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G41160.1	protein_coding	Ubiquitin-associated (UBA) protein	ATI3A interacting protein containing a large N-terminal rhomboid-like transmembrane domain and a UBA domain at their C terminus, localized in the ER with a role in plant heat tolerance. UBAC2 proteins may act as both cargo receptors and inducers of an ATI3-mediated selective autophagy pathway, where ATI3 and UBAC2 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	Ubiquitin-associated (UBA) protein;(source:Araport11)
AT2G40980.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G41150.1	protein_coding			plant/protein;(source:Araport11)
AT2G41140.1	protein_coding	CDPK-related kinase 1	Encodes CDPK-related kinase 1 (CRK1).	CDPK-related kinase 1;(source:Araport11)
AT2G41130.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes STC8 (salt tolerant callus 8)/bHLH106 (basic helix-loop-helix transcription factor bHLH106). Knockout lines are more sensitive to NaCl, KCl, LiCl, ABA, and low temperatures than the wild-type.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G41050.1	protein_coding	PQ-loop repeat family protein / transmembrane family protein		PQ-loop repeat family protein / transmembrane family protein;(source:Araport11)
AT2G41120.1	protein_coding			DUF309 domain protein;(source:Araport11)
AT2G41040.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G41110.1	protein_coding	calmodulin 2	Encodes a touch-inducible calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. The mRNA is cell-to-cell mobile.	calmodulin 2;(source:Araport11)
AT2G41100.1	protein_coding	Calcium-binding EF hand family protein	encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers. The mRNA is cell-to-cell mobile.	Calcium-binding EF hand family protein;(source:Araport11)
AT2G41200.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G41090.1	protein_coding	Calcium-binding EF-hand family protein	Encodes a cytoplasmic, calcium binding calmodulin variant. CML10 interacts with phosphomannomutase (PMM)in vivo and increases its activity thereby affecting ascorbic acid biosynthesis. Its expression is induced by oxidative and other stress. The mRNA is cell-to-cell mobile.	Calcium-binding EF-hand family protein;(source:Araport11)
AT2G41020.1	protein_coding	WW domain-containing protein		WW domain-containing protein;(source:Araport11)
AT2G41190.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT2G41080.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		pentatricopeptide (PPR) repeat protein;(source:Araport11)
AT2G41010.1	protein_coding	calmodulin (CAM)-binding protein of 25 kDa	Encodes a novel calmodulin binding protein whose gene expression is induced by dehydration and ionic (salt) and non-ionic (mannitol) osmotic stress. Lines over-expressing this gene are more sensitive and anti-sense lines are more tolerant to osmotic stress, suggesting this gene may be a negative regulator of response to osmotic stress.	calmodulin (CAM)-binding protein of 25 kDa;(source:Araport11)
AT2G41180.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT2G41070.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G41000.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G05700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 3.3e-45 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT2G05690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.9e-45 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G05660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G05680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G05670.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT2G05740.1	pseudogene			pseudogene of DNA (cytosine-5-)-methyltransferase family protein;(source:Araport11)
AT2G05730.1	pseudogene			pseudogene of DNA (cytosine-5-)-methyltransferase family protein;(source:Araport11)
AT2G05720.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G05710.1	protein_coding	aconitase 3	Encodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate, indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. One member of the family (ACO1 - At35830) was shown to specifically bind to the 5' UTR of CSD2 in vitro. ACO3 is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. The mRNA is cell-to-cell mobile.	aconitase 3;(source:Araport11)
AT2G35250.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT2G35090.1	protein_coding	Protein of unknown function (DUF1640)		transmembrane protein, putative (DUF1640);(source:Araport11)
AT2G35160.1	protein_coding	SU(VAR)3-9 homolog 5	Encodes SU(var)3-9 homologue 5 (SUVH5).  SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.	SU(VAR)3-9 homolog 5;(source:Araport11)
AT2G35240.1	protein_coding	plastid developmental protein DAG, putative	Member of MORF family consisting of of nine full-length proteins encoded in the nuclear genome. MORF proteins are required for all RNA editing events in plastids and for many, possibly also all, sites in mitochondria. Potential link between the RNA binding PPR protein and the protein contributing the enzymatic activity in RNA editing.	plastid developmental protein DAG;(source:Araport11)
AT2G35080.1	protein_coding	nucleotide binding;ATP binding;aminoacyl-tRNA ligases		ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein;(source:Araport11)
AT2G35150.1	protein_coding	EXORDIUM like 7	Encodes EXORDIUM LIKE 7.	EXORDIUM like 7;(source:Araport11)
AT2G35070.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G35300.1	protein_coding	Late embryogenesis abundant protein, group 1 protein	Encodes LEA4-2/LEA18, a member of the Late Embryogenesis Abundant (LEA) proteins which typically accumulate in response to low water availability conditions imposed during development or by the environment.	Late embryogenesis abundant protein, group 1 protein;(source:Araport11)
AT2G35320.1	protein_coding	EYES ABSENT homolog	homologue of the animal Eyes Absent genes. encodes a tyrosine-specific phosphatase. the protein sequence lacks the cys-containing signature of the classical tyrosine phosphatases. belongs to the aspartate-based phosphatases. The enzyme activity is strictly metal-dependent.	eyes absent-like protein;(source:Araport11)
AT2G35230.1	protein_coding	VQ motif-containing protein	Contains a plant-specific VQ motif. Involved in endosperm growth and seed size determination. IKU1 is expressed in the early endosperm and its progenitor, the central cell.IKU1 interacts with MINI3 in the yeast two-hybrid system.	VQ motif-containing protein;(source:Araport11)
AT2G35140.1	protein_coding	DCD (Development and Cell Death) domain protein		DCD (Development and Cell Death) domain protein;(source:Araport11)
AT2G35210.1	protein_coding	root and pollen arfgap	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	root and pollen arfgap;(source:Araport11)
AT2G35310.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT2G35290.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G35200.1	protein_coding			DUF740 family protein;(source:Araport11)
AT2G35130.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G35280.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G35190.1	protein_coding	novel plant snare 11	plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate.	Putative plant snare 11;(source:Araport11)
AT2G35120.1	protein_coding	Single hybrid motif superfamily protein		Single hybrid motif superfamily protein;(source:Araport11)
AT2G35270.1	protein_coding	Predicted AT-hook DNA-binding family protein	Direct target of AGAMOUS. Regulates patterning  and differentiation of reproductive organs.	Putative AT-hook DNA-binding family protein;(source:Araport11)
AT2G35180.1	pseudogene			pseudogene of Zinc-binding ribosomal protein family protein;(source:Araport11)
AT2G35110.1	protein_coding	transcription activators	Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Mutant displays distorted trichomes, a phenotype that can be phenocopied by treatment of WT plants with actin-interacting drugs. Its ER localization is independent of upstream SPK1 activation signaling and the physical association with the WAVE/SCAR Regulatory complex binding partner SRA1. ER-localized NAP1 has little colocalization with actin and represent the inactive pool of NAP1 in these cell types.	transcription activator;(source:Araport11)
AT2G35260.1	protein_coding			CAAX protease self-immunity protein;(source:Araport11)
AT2G35170.1	protein_coding	Histone H3 K4-specific methyltransferase SET7/9 family protein		Histone H3 K4-specific methyltransferase SET7/9 family protein;(source:Araport11)
AT2G35100.1	protein_coding	Exostosin family protein	Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems.	Exostosin family protein;(source:Araport11)
AT2G10530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.9e-42 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G10490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-43 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G10520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G10510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.5e-94 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G10500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07430.1);(source:TAIR10)
AT2G10570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.1e-239 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G10560.1	protein_coding			chaperone;(source:Araport11)
AT2G10550.1	protein_coding		Most likely an inactive paralog of the uracil DNA glycosylase AtUNG (At3g18630) generated by a gene duplication event and subsequently disrupted by transposon insertions (PubMed ID: 20056608).	uracil-DNA glycosylase;(source:Araport11)
AT2G10540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.1e-165 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT2G06930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.3e-233 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G07020.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT2G06940.1	pseudogene			pseudogene of Pectin lyase-like superfamily protein;(source:Araport11)
AT2G07030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.9e-11 P-value blast match to Q9XE24 /118-277 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G06950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.7e-243 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT2G07040.1	protein_coding	Leucine-rich repeat protein kinase family protein	Pollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G06960.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G06980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06990.1	protein_coding	RNA helicase, ATP-dependent, SK12/DOB1 protein	Encodes a putative DExH-box RNA helicase that acts redundantly with HEN1, HUA1, and HUA2 in the specification of floral organ identity in the third whorl.	RNA helicase, ATP-dependent, SK12/DOB1 protein;(source:Araport11)
AT2G06910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 4.3e-100 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT2G07000.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G06920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.7e-13 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G07010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.9e-175 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G12600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.7e-43 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT2G12620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.1e-10 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT2G12640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.7e-25 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT2G12630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G12560.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase,  blastp match of 31%25 identity and 7.0e-21 P-value to GP|27311287|gb|AAO00713.1||AC078894 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G12570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.7e-216 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G12580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.0e-11 P-value blast match to GB:NP_038604 L1 repeat, Tf subfamily, member 26 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G12590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.3e-170 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G12610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1);(source:TAIR10)
AT2G03500.1	protein_coding	Homeodomain-like superfamily protein	Encodes a nuclear localized member of the MYB family of transcriptional regulators that is involved in negative regulation of flowering.  It is expressed in vascular tissues and at low levels in the shoot apex during the transition to flowering. Loss of function mutations are early flowering.EFM is involved in the autonomous, thermosensory and GA pathways and expression is directly regulated by SVP. EFM interacts with JMJD5 to repress FT expression.	Homeodomain-like superfamily protein;(source:Araport11)
AT2G03550.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G03470.1	protein_coding	ELM2 domain-containing protein		ELM2 domain-containing protein;(source:Araport11)
AT2G03390.1	protein_coding	uvrB/uvrC motif-containing protein		uvrB/uvrC motif-containing protein;(source:Araport11)
AT2G03460.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G03380.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G03450.1	protein_coding	purple acid phosphatase 9		purple acid phosphatase 9;(source:Araport11)
AT2G03540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1);(source:TAIR10)
AT2G03440.1	protein_coding	nodulin-related protein 1	Induced at the transcriptional level by Pseudomonas syringae pv. tomato infection.	nodulin-related protein 1;(source:Araport11)
AT2G03370.1	protein_coding	Glycosyltransferase family 61 protein		O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase-like protein;(source:Araport11)
AT2G03480.1	protein_coding	QUASIMODO2 LIKE 2	Encodes QUASIMODO2 LIKE2 (QUL2), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.	QUASIMODO2 LIKE 2;(source:Araport11)
AT2G03430.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT2G03360.1	protein_coding	Glycosyltransferase family 61 protein		Glycosyltransferase family 61 protein;(source:Araport11)
AT2G03530.1	protein_coding	ureide permease 2	Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.	ureide permease 2;(source:Araport11)
AT2G03420.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G03350.1	protein_coding	Protein of unknown function, DUF538		DUF538 family protein (Protein of unknown function, DUF538);(source:Araport11)
AT2G03410.1	protein_coding	Mo25 family protein		Mo25 family protein;(source:Araport11)
AT2G03340.1	protein_coding	WRKY DNA-binding protein 3	Encodes WRKY DNA-binding protein 3 (WRKY3).	WRKY DNA-binding protein 3;(source:Araport11)
AT2G03330.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G03520.1	protein_coding	ureide permease 4	Encodes AtUPS4, a member of the Arabidopsis ureide permease family.	ureide permease 4;(source:Araport11)
AT2G03510.1	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT2G07680.1	protein_coding	multidrug resistance-associated protein 11	Encodes ABCC13/MRP11, a member of the multidrug resistance associated protein MRP/ABCC subfamily. Its expression is induced by gibberellic acid and downregulated by naphthalene acetic acid, abscisic acid, and zeatin.	multidrug resistance-associated protein 11;(source:Araport11)
AT2G39800.1	protein_coding	delta1-pyrroline-5-carboxylate synthase 1	encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner.	delta1-pyrroline-5-carboxylate synthase 1;(source:Araport11)
AT2G39720.1	protein_coding	RING-H2 finger C2A	Encodes a putative RING-H2 finger protein RHC2a.	RING-H2 finger C2A;(source:Araport11)
AT2G39810.1	protein_coding	ubiquitin-protein ligases	A novel protein with a RING finger motif near the amino terminus. Negative  regulator of cold responses. Functions as an E3 ligase required for the ubiquitination of ICE1. HOS1  physically interacts with ICE1 and mediates the ubiquitination of  ICE1 both in vitro and in vivo. Overexpression represses the expression of CBFs and their downstream genes and confers increased sensitivity to freezing stress. The mRNA is cell-to-cell mobile.	ubiquitin-protein ligase;(source:Araport11)
AT2G39730.1	protein_coding	rubisco activase	Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco. Involved in jasmonate-induced leaf senescence.	rubisco activase;(source:Araport11)
AT2G39820.1	protein_coding	Translation initiation factor IF6		Translation initiation factor IF6;(source:Araport11)
AT2G39830.1	protein_coding	DA1-related protein 2	Essential for early phloem development and function, and for root system development.DAR2 is a member of a small (7 member) ubiquitin binding protein family. It appears to play a role in regulation of endoreduplication in leaf epidermal tissue.	DA1-related protein 2;(source:Araport11)
AT2G39740.1	protein_coding	Nucleotidyltransferase family protein	Encodes HESO1 (HEN1 suppressor 1), a terminal nucleotidyl transferase that uridylates miRNAs and siRNAs at 3&#8242; end. HESO1-mediated 3&#8242; uridylation destabilizes small RNAs in hen1.	Nucleotidyltransferase family protein;(source:Araport11)
AT2G39840.1	protein_coding	type one serine/threonine protein phosphatase 4	Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. The mRNA is cell-to-cell mobile.	type one serine/threonine protein phosphatase 4;(source:Araport11)
AT2G39750.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G39760.1	protein_coding	BTB/POZ/MATH-domains containing protein	Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB/POZ/MATH-domains containing protein;(source:Araport11)
AT2G39770.1	protein_coding	Glucose-1-phosphate adenylyltransferase family protein	Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for ascorbate (vitamin C) biosynthesis.  Mutations in this gene confer hypersensitivity to NH4+.	Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT2G39780.1	protein_coding	ribonuclease 2	Encodes the main endoribonuclease activity in plant cells and localizes to the endoplasmic reticulum (ER), ER-derived structures, and vacuoles.  It is essential for normal ribosomal RNA recycling. The mRNA is cell-to-cell mobile.	ribonuclease 2;(source:Araport11)
AT2G39790.1	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT2G10670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.6e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.5e-59 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.3e-277 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.6e-162 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G10650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.5e-43 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.4e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G10590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.4e-257 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 2.7e-97 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT2G10680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G38620.1	protein_coding	cyclin-dependent kinase B1;2	Encodes a member of a plant specific family of cyclin dependent kinases.	cyclin-dependent kinase B1;(source:Araport11)
AT2G38700.1	protein_coding	mevalonate diphosphate decarboxylase 1	Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis. The protein appears to form a homodimeric complex. Incidentally, it was shown that the Arabidopsis MVD protein could also interact with its yeast homolog to form a heterodimer.	mevalonate diphosphate decarboxylase 1;(source:Araport11)
AT2G38610.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT2G38690.1	protein_coding			gem-associated-like protein;(source:Araport11)
AT2G38530.1	protein_coding	lipid transfer protein 2	Involved in lipid transfer between membranes and plays a role in maintaining the integrity of the cuticle-cell wall interface. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	lipid transfer protein 2;(source:Araport11)
AT2G38680.1	protein_coding	5'-nucleotidases;magnesium ion binding		5-nucleotidase / magnesium ion binding protein;(source:Araport11)
AT2G38520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.4e-60 P-value blast match to dbj|BAA78427.1| polyprotein (AtRE2-2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT2G38670.1	protein_coding	phosphorylethanolamine cytidylyltransferase 1	Encodes a mitochondrial ethanolamine-phosphate cytidylyltransferase, involved in phosphatidylethanolamine (PE) biosynthesis.	phosphorylethanolamine cytidylyltransferase 1;(source:Araport11)
AT2G38600.1	protein_coding	HAD superfamily, subfamily IIIB acid phosphatase 		HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT2G38740.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G38510.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT2G38660.1	protein_coding	Amino acid dehydrogenase family protein		Amino acid dehydrogenase family protein;(source:Araport11)
AT2G38590.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G38730.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT2G38770.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G38650.1	protein_coding	galacturonosyltransferase 7		galacturonosyltransferase 7;(source:Araport11)
AT2G38580.1	protein_coding	Mitochondrial ATP synthase D chain-related protein		Mitochondrial ATP synthase D chain-related protein;(source:Araport11)
AT2G38720.1	protein_coding	microtubule-associated protein 65-5		microtubule-associated protein 65-5;(source:Araport11)
AT2G38640.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT2G38570.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G38710.1	protein_coding	AMMECR1 family		AMMECR1 family;(source:Araport11)
AT2G38560.1	protein_coding	transcript elongation factor IIS	Encodes RNA polymerase II transcript elongation factor TFIIS.  Complements yeast TFIIS mutation.  Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.	transcript elongation factor IIS;(source:Araport11)
AT2G38630.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G38550.1	protein_coding	Transmembrane proteins 14C		Transmembrane proteins 14C;(source:Araport11)
AT2G38540.1	protein_coding	lipid transfer protein 1	Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. The mRNA is cell-to-cell mobile.	lipid transfer protein 1;(source:Araport11)
AT2G38760.1	protein_coding	annexin 3	Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. The mRNA is cell-to-cell mobile.	annexin 3;(source:Araport11)
AT2G38750.1	protein_coding	annexin 4	Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.	annexin 4;(source:Araport11)
AT2G14690.1	protein_coding	Glycosyl hydrolase superfamily protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT2G14680.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT2G14670.1	protein_coding	sucrose-proton symporter 8		sucrose-proton symporter 8;(source:Araport11)
AT2G14660.1	protein_coding			thymocyte nuclear-like protein;(source:Araport11)
AT2G14650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.6e-311 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G14640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.5e-119 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G14630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28785.1);(source:TAIR10)
AT2G14620.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 10		xyloglucan endotransglucosylase/hydrolase 10;(source:Araport11)
AT2G14700.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G14610.1	protein_coding	pathogenesis-related gene 1	PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response.  Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence  actually corresponds to PR1.  Expression of this gene is salicylic-acid responsive.	pathogenesis-related protein 1;(source:Araport11)
AT2G30460.1	protein_coding	Nucleotide/sugar transporter family protein	UXT2 is a member of the NST-KT subfamily  of nucleotide/sugar transporters. It is localized to the golgi and functions as a UDP-Xyl transporter.	Nucleotide/sugar transporter family protein;(source:Araport11)
AT2G30550.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G30540.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2.	Thioredoxin superfamily protein;(source:Araport11)
AT2G30620.1	protein_coding	winged-helix DNA-binding transcription factor family protein		winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT2G30440.1	protein_coding	thylakoid processing peptide	Encodes a thylakoidal processing peptidase that removes signal sequences from proteins synthesized in the cytoplasm and transported into the thylakoid lumen. The mRNA is cell-to-cell mobile.	thylakoid processing peptide;(source:Araport11)
AT2G30530.1	protein_coding			zinc finger CCCH domain protein;(source:Araport11)
AT2G30520.1	protein_coding	Phototropic-responsive NPH3 family protein	light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT2G30600.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT2G30590.1	protein_coding	WRKY DNA-binding protein 21	Encodes WRKY DNA-binding protein 21 (WRKY21).	WRKY DNA-binding protein 21;(source:Araport11)
AT2G30500.1	protein_coding	Kinase interacting (KIP1-like) family protein		Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT2G30580.1	protein_coding	DREB2A-interacting protein 2	Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.	DREB2A-interacting protein 2;(source:Araport11)
AT2G30490.1	protein_coding	cinnamate-4-hydroxylase	Encodes a cinnamate-4-hydroxylase. Mutations in this gene impact phenylpropanoid metabolism, growth and development.	cinnamate-4-hydroxylase;(source:Araport11)
AT2G30570.1	protein_coding	photosystem II reaction center W	Encodes PsbW, a protein similar to photosystem II reaction center subunit W. Loss of PsbW destabilizes the supramolecular organization of PSII.	photosystem II reaction center W;(source:Araport11)
AT2G30480.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G30470.1	protein_coding	high-level expression of sugar-inducible gene 2	HSI2 is a member of the ABI3 family of B3 domain proteins and functions as an active repressor of the Spo minimal promoter through the EAR motif. It contains a plant-specific B3 DNA-binding domain. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50µM ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain. HSI2 is also an epigenetic repressor as it also contains functional plant homeodomain-like (PHD-L) and zinc-finger Cys- and Trp-containing (CW) domains associated with epigenetic regulation. The PHD-L domain of HSI2 is connected to promoting trimethylation of Lys-27 on histone 3 (H3K27me3), while the CW domain can bind directly to H3K4me3. Through these domains, HSI2 represses the seed maturation program during seed germination by repressing transcription of the core LAFL (LEC1, ABI3, FUS3, and LEC2) seed developmental transcriptional regulators. In developing A. thaliana embryos, HSI2 suppresses expression of a large number of genes, many identified as targets of FUS3. However, the absence of HSI2 had no effect on transcript levels of the LAFL regulators and the levels of measured metabolites and phytohormones (ABA, auxin, and JA derivatives) in developing Arabidopsis embryos. HSI2 likely fine-tunes seed maturation by repressing genes involved in early embryogenesis that are not required later for seed maturation and desiccation.	B3 domain-containing transcription repressor VAL1;(source:Araport11)
AT2G30560.1	protein_coding	glycine-rich protein	Needs to be reannotated and split into two genes, AtEAL2 and AtEAL3, both encoding maize Ebb apparatus 1-like proteins. The current predicted structure is not well supported (T8, one *). The predicted proteins can be found in doi.org/10.1007/s00425-005-0174-z	glycine-rich protein;(source:Araport11)
AT2G30430.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G30380.1	protein_coding	Plant protein of unknown function (DUF641)		MYB family transcription factor;(source:Araport11)
AT2G42060.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G41970.1	protein_coding	Protein kinase superfamily protein	Encodes MRI, a plasma membrane-localized member of the RLCK-VIII subfamily. Preferentially expressed in both pollen tubes and root hairs. mri-knockout mutants display spontaneous pollen tube and root-hair bursting.	Protein kinase superfamily protein;(source:Araport11)
AT2G42050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35860.1);(source:TAIR10)
AT2G41960.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G42040.1	protein_coding			WRC protein;(source:Araport11)
AT2G41940.1	protein_coding	zinc finger protein 8	Encodes a zinc finger protein containing only a single zinc finger.	zinc finger protein 8;(source:Araport11)
AT2G42030.1	protein_coding	RING/U-box superfamily protein	Encodes a RING domain E3 ligase. Has overlapping function with MUSE1 in the negative regulation of defence responses. SIKIC2 (and possibly SIKIC1 and 3) is ubiquination target.	RING/U-box superfamily protein;(source:Araport11)
AT2G41930.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G41950.1	protein_coding			DNA-directed RNA polymerase subunit beta;(source:Araport11)
AT2G41920.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G42010.1	protein_coding	phospholipase D beta 1	phospholipase D (PLDbeta)	phospholipase D beta 1;(source:Araport11)
AT2G41910.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G42000.1	protein_coding	Plant EC metallothionein-like protein, family 15	AtMT4a is a member of Type 4 metallothionein (MT) genes. It is involved in the early develoment of the embryo and in the accumulation of metal ions especially Zn in the seeds.	plant EC metallothionein family protein;(source:Araport11)
AT2G42080.1	protein_coding	Chaperone DnaJ-domain superfamily protein	Encodes a mitochondrial-localized DnaJ/Heat shock protein 40 (DnaJ/Hsp40) family, which is involved in protein folding. It induces cell elongation during brassinosteroid signaling through the promotion of ATP synthesis in mitochondria.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G42090.1	protein_coding	actin 9	actin related gene or pseudogene, based on sequence divergence and lack of expression	actin 9;(source:Araport11)
AT2G42070.1	protein_coding	nudix hydrolase homolog 23	Encodes a plastid-localized Nudix hydrolase that has FAD pyrophosphohydrolase activity. Negative feedback regulation of the metabolism of flavins through the hydrolysis of FAD by AtNUDX23 in plastids is involved in the flavin homeostasis in plant cells.	nudix hydrolase homolog 23;(source:Araport11)
AT2G41990.1	protein_coding			late embryogenesis abundant protein;(source:Araport11)
AT2G41980.1	protein_coding	Protein with RING/U-box and TRAF-like domains	SINAT1 is an E3 ligase involved in protein ubiquination. Along with MUSE13/14 targets ATG6 ubiquination to regulate autophagosome assembly.	Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT2G41900.1	protein_coding	CCCH-type zinc finger protein with ARM repeat domain		CCCH-type zinc finger protein with ARM repeat domain-containing protein;(source:Araport11)
AT2G05980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.0e-42 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G05900.1	protein_coding	SET domain protein 11	Predicted to encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.	SET domain protein 11;(source:Araport11)
AT2G05990.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes enoyl-ACP reductase a component of the fatty acid synthase complex.  A reduced function mutation in this gene, mod1, was found in a screen for premature cell death mutants. Mutant plants have reduced lipid level and pleiotropic morphological defects, including chlorotic and abnormally shaped leaves. The mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G05910.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT2G05890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30550.1);(source:TAIR10)
AT2G05920.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT2G05930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G06000.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G05940.1	protein_coding	Protein kinase superfamily protein	Encodes a receptor-like cytoplasmic kinase that phosphorylates the host target RIN4, leading to the activation of a plant innate immune receptor RPM1.	Protein kinase superfamily protein;(source:Araport11)
AT2G05830.1	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein	Encodes a 5-methylthioribose-1-phosphate isomerase.	NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT2G05950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32050.1);(source:TAIR10)
AT2G05840.1	protein_coding	20S proteasome subunit PAA2	Encodes 20S proteasome subunit PAA2 (PAA2).	20S proteasome subunit PAA2;(source:Araport11)
AT2G05960.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.2e-200 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G05850.1	protein_coding	serine carboxypeptidase-like 38		serine carboxypeptidase-like 38;(source:Araport11)
AT2G05970.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT2G05860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07310.1);(source:TAIR10)
AT2G05870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to cytochrome P-450 aromatase-related [Arabidopsis thaliana] (TAIR:AT4G07435.1);(source:TAIR10)
AT2G05880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G35260.1);(source:TAIR10)
AT2G40770.1	protein_coding	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding		RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein;(source:Araport11)
AT2G40670.1	protein_coding	response regulator 16	response regulator 16	response regulator 16;(source:Araport11)
AT2G40760.1	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein		Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT2G40660.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G40750.1	protein_coding	WRKY DNA-binding protein 54	member of WRKY Transcription Factor; Group III	WRKY DNA-binding protein 54;(source:Araport11)
AT2G40650.1	protein_coding	PRP38 family protein		PRP38 family protein;(source:Araport11)
AT2G40740.1	protein_coding	WRKY DNA-binding protein 55	member of WRKY Transcription Factor; Group III	WRKY DNA-binding protein 55;(source:Araport11)
AT2G40730.1	protein_coding	Protein kinase family protein with ARM repeat domain		kinase family with ARM repeat domain-containing protein;(source:Araport11)
AT2G40720.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G40710.1	protein_coding	Haemolysin-III related integral membrane protein		hemolysin-III related integral membrane protein;(source:Araport11)
AT2G40800.1	protein_coding			import inner membrane translocase subunit;(source:Araport11)
AT2G40700.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	DEAD-box helicase family protein. Overexpression confers tolerance to salt stress.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G40690.1	protein_coding	NAD-dependent glycerol-3-phosphate dehydrogenase family protein	Encodes a putative dihydroxyacetone phosphate (DHAP) reductase involved  in glycerol-3-phosphate supply within the chloroplast for synthesis of glycerolipids. Mutants have reduced levels of hexadecatrienoic acid, which is rescued by exogenous  glycerol-3-phosphate. This gene appears to be involved in the flux of fatty acids in the prokaryotic glyerolipid biosynthesis pathway.	NAD-dependent glycerol-3-phosphate dehydrogenase family protein;(source:Araport11)
AT2G40790.1	protein_coding	C-terminal cysteine residue is changed to a serine 2	Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.  It contains a large N-terminal extension with respect to the dicysteinic thioredoxins that is enriched with 8 cysteines and positively charged residues.	C-terminal cysteine residue is changed to a serine 2;(source:Araport11)
AT2G40680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52065.1);(source:TAIR10)
AT2G40780.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G39010.1	protein_coding	plasma membrane intrinsic protein 2E		plasma membrane intrinsic protein 2E;(source:Araport11)
AT2G38940.1	protein_coding	phosphate transporter 1;4	Encodes Pht1;4, a member of the Pht1 family of phosphate transporters which include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341). Expression is upregulated in the shoot of cax1/cax3 mutant and is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots. The mRNA is cell-to-cell mobile.	phosphate transporter 1;(source:Araport11)
AT2G39020.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Although this locus shares considerable sequence similarity with the adjacent NATA1 gene (At2g39030), they appear to encode genes with different functions. NATA1 is involved in the production of N-delta-acetylornithine, but, overexpression of At2g39020 in tobacco does not lead to the formation of this defense compound. The mRNA is cell-to-cell mobile.	Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G39100.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G38950.1	protein_coding	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein		Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11)
AT2G39110.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G38960.1	protein_coding	endoplasmic reticulum oxidoreductins 2	Encodes an oxidoreductin required for oxidative protein folding in the ER and exists in two distinct oxidized isoforms (Ox1 and Ox2), which are determined by the formation or breakage of the putative regulatory disulfide. AtERO2 is mainly present in the Ox2 redox state.	endoplasmic reticulum oxidoreductins 2;(source:Araport11)
AT2G39030.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Encodes a protein that acts as an ornithine N-delta-acetyltransferase, leading to the formation of N-delta-actetylornithine. This compound is likely used in plant defense and levels of it are increased in Arabidopsis plants in response to MeJA and ABA. The mRNA is cell-to-cell mobile.	Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G38920.1	protein_coding	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related		SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein;(source:Araport11)
AT2G39120.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein	Encodes a mitochondrial protein essential for the splicing of group II introns in two mitochondrial genes for which splicing factors had not previously been identified: rpl2 and ccmFc.	Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT2G38970.1	protein_coding	Zinc finger (C3HC4-type RING finger) family protein		Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT2G39040.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G38860.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes protease I (pfpI)-like protein YLS5.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT2G38980.1	pseudogene			pseudogene of cationic amino acid transporter 4;(source:Araport11)
AT2G39050.1	protein_coding	hydroxyproline-rich glycoprotein family protein	Encodes a nucleocytoplasmic lectin that is capable of binding carbohydrates. It is involved in ABA mediated stomatal movement and increased expression is correlated with increased resistance to Pseudomonas syringae.	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G38990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to  MURA transposase of maize Mutator transposon;(source:TAIR10)
AT2G39060.1	protein_coding	Nodulin MtN3 family protein	Encodes a sucrose transporter that is expressed in nectaries and is involved in nectar secretion.	Nodulin MtN3 family protein;(source:Araport11)
AT2G38870.1	protein_coding	Serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family.  Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	Serine protease inhibitor, potato inhibitor I-type family protein;(source:Araport11)
AT2G39000.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Encodes a chloroplast localized n-acetyltransfefase involved in  N-terminal protein amino acid acetylation.	Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G38880.1	protein_coding	nuclear factor Y, subunit B1	Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1.  Confers drought tolerance.	nuclear factor Y, subunit B1;(source:Araport11)
AT2G39080.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G38890.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G39090.1	protein_coding	tetratricopeptide repeat (TPR)-containing protein		tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT2G38900.1	protein_coding	Serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family.  Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	Serine protease inhibitor, potato inhibitor I-type family protein;(source:Araport11)
AT2G38910.1	protein_coding	calcium-dependent protein kinase 20	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 20;(source:Araport11)
AT2G40170.1	protein_coding	Stress induced protein	Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of desiccation tolerance and rate of water loss during seed maturation.	Stress induced protein;(source:Araport11)
AT2G40180.1	protein_coding	phosphatase 2C5	Encodes PP2C5, a member of the PP2C family phosphatases.  PP2C5 acts as a MAPK phosphatase that positively regulates seed germination, stomatal closure and ABA-inducible gene expression.	phosphatase 2C5;(source:Araport11)
AT2G40160.1	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT2G40140.1	protein_coding	zinc finger (CCCH-type) family protein		zinc finger (CCCH-type) family protein;(source:Araport11)
AT2G40230.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT2G40150.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 28	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 28;(source:Araport11)
AT2G40130.1	protein_coding	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein	Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance.	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G40190.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a putative alpha-1,2-mannosyltransferase in N-linked glycoprotein (homologous to yeast ALG11).  Plays vital roles in cell-wall biosynthesis and abiotic stress response. Located in  endoplasmic reticulum membrane.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G40200.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G40210.1	protein_coding	AGAMOUS-like 48		AGAMOUS-like 48;(source:Araport11)
AT2G40220.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and  hexokinase-dependent sugar responses.  Acts downstream of GUN1 in retrograde signaling. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G47340.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT2G47260.1	protein_coding	WRKY DNA-binding protein 23	Encodes a member of WRKY Transcription Factor; Group I. Involved in nematode feeding site establishment and auxin mediated PIN polar localization in roots. Expression is induced by auxin.	WRKY DNA-binding protein 23;(source:Araport11)
AT2G47350.1	protein_coding	HIT zinc finger ;PAPA-1-like conserved region		HIT zinc finger and PAPA-1-like domain-containing protein;(source:Araport11)
AT2G47270.1	protein_coding	sequence-specific DNA binding transcription factors;transcription regulators	Encodes UPBEAT1 (UPB1), a transcription factor with a bHLH domain. Regulates the expression of a set of peroxidases that modulate the balance of reactive oxygen species (ROS) between the zones of cell proliferation and the zone of cell elongation where differentiation begins. Disruption of UPB1 activity alters this ROS balance, leading to a delay in the onset of differentiation. Regulates growth by  mediating cell cycle progression.	transcription factor UPBEAT protein;(source:Araport11)
AT2G47200.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G47280.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G47210.1	protein_coding	myb-like transcription factor family protein		myb-like transcription factor family protein;(source:Araport11)
AT2G47360.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G47220.1	protein_coding	DOMAIN OF UNKNOWN FUNCTION 724 5	Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype	polyribonucleotide phosphorylase, putative (DOMAIN OF UNKNOWN FUNCTION 724 5);(source:Araport11)
AT2G47370.1	protein_coding	Calcium-dependent phosphotriesterase superfamily protein		Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT2G47230.1	protein_coding	DOMAIN OF UNKNOWN FUNCTION 724 6	Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins.	agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 6);(source:Araport11)
AT2G47380.1	protein_coding	Cytochrome c oxidase subunit Vc family protein		Cytochrome c oxidase subunit Vc family protein;(source:Araport11)
AT2G47310.1	protein_coding	flowering time control protein-related / FCA gamma-related		flowering time control protein-related / FCA gamma-like protein;(source:Araport11)
AT2G47240.1	protein_coding	AMP-dependent synthetase and ligase family protein	Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis The mRNA is cell-to-cell mobile.	AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT2G47390.1	protein_coding	Prolyl oligopeptidase family protein		Prolyl oligopeptidase family protein;(source:Araport11)
AT2G47320.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT2G47250.1	protein_coding	RNA helicase family protein		RNA helicase family protein;(source:Araport11)
AT2G47330.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G47400.1	protein_coding	CP12 domain-containing protein 1	CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. The mRNA is cell-to-cell mobile.	CP12 domain-containing protein 1;(source:Araport11)
AT2G47190.1	protein_coding	myb domain protein 2	Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain  and is known to regulate the expression of salt- and dehydration-responsive genes.  Has been shown to bind calmodulin.	myb domain protein 2;(source:Araport11)
AT2G02510.1	protein_coding	NADH dehydrogenase (ubiquinone)s		NADH dehydrogenase (ubiquinone)s;(source:Araport11)
AT2G02590.1	protein_coding			small multi-drug export protein;(source:Araport11)
AT2G02580.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 9	member of CYP71B	cytochrome P450, family 71, subfamily B, polypeptide 9;(source:Araport11)
AT2G02630.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G02500.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Encodes a protein with 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase activity. The enzyme has an absolute requirement for divalent cations (Mg2+ reaches the highest catalytic activity).	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT2G02570.1	protein_coding	nucleic acid binding;RNA binding		nucleic acid binding/RNA binding protein;(source:Araport11)
AT2G02620.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G02560.1	protein_coding	cullin-associated and neddylation dissociated	Arabidopsis thaliana homolog of human  CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1. The mRNA is cell-to-cell mobile.	cullin-associated and neddylation dissociated;(source:Araport11)
AT2G02490.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G02610.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G02550.1	protein_coding	PIN domain-like family protein		PIN domain-like family protein;(source:Araport11)
AT2G02480.1	protein_coding	AAA-type ATPase family protein	STICHEL mutant shows trichomes with fewer than normal branches.	AAA-type ATPase family protein;(source:Araport11)
AT2G02540.1	protein_coding	homeobox protein 21	Zinc finger homeobox protein. Expressed in vascular tissue.  In a yeast one hybrid system was not able to transactivate a reporter gene.	homeobox protein 21;(source:Araport11)
AT2G02670.1	pseudogene			pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G02520.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT2G02660.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G02650.1	protein_coding	Ribonuclease H-like superfamily protein		Ribonuclease H-like superfamily protein;(source:Araport11)
AT2G02640.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G01650.1	protein_coding	plant UBX domain-containing protein 2	encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.	plant UBX domain-containing protein 2;(source:Araport11)
AT2G01730.1	protein_coding	cleavage and polyadenylation specificity factor 73 kDa subunit-II	a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo	cleavage and polyadenylation specificity factor 73 kDa subunit-II;(source:Araport11)
AT2G01640.1	protein_coding			ribosome biogenesis protein;(source:Araport11)
AT2G01720.1	protein_coding	Ribophorin I		Ribophorin I;(source:Araport11)
AT2G01770.1	protein_coding	vacuolar iron transporter 1	Encodes an iron transporter required for iron sequestration into vacuoles. Expressed in developing embryo and seed. Localized in the vacuolar membrane.	vacuolar iron transporter 1;(source:Araport11)
AT2G01810.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G01710.1	protein_coding	Chaperone DnaJ-domain superfamily protein	SDJ2 functions partially redundantly with SDJ1 and SDJ3 and interacts with SUVH1 and SUVH3 to form a SUVH-SDJ complex. The complex binds promoters with DNA methylation and mediates transcriptional activation of promoter methylated genes.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G01760.1	protein_coding	response regulator 14	member of Response Regulator: B- Type	response regulator 14;(source:Araport11)
AT2G01630.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT2G01700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26860.1);(source:TAIR10)
AT2G01750.1	protein_coding	microtubule-associated proteins 70-3	Encodes a microtubule associated protein (MAP70-3). Expressed in all tissues.	microtubule-associated proteins 70-3;(source:Araport11)
AT2G01620.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT2G01690.1	protein_coding	ARM repeat superfamily protein	Homologous to mammalian VAC14s, which is involved in the production of phosphatidylinositol 3,5-bisphosphate. Mutants are male gametophyte lethal.	ARM repeat superfamily protein;(source:Araport11)
AT2G01740.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G01680.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT2G01670.1	protein_coding	nudix hydrolase homolog 17		nudix hydrolase homolog 17;(source:Araport11)
AT2G01800.1	protein_coding	COP1-interacting protein-related		COP1-interacting protein-like protein;(source:Araport11)
AT2G01660.1	protein_coding	plasmodesmata-located protein 6	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	plasmodesmata-located protein 6;(source:Araport11)
AT2G01790.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G01780.1	protein_coding	Curculin-like (mannose-binding) lectin family protein		Curculin-like (mannose-binding) lectin family protein;(source:Araport11)
AT2G28650.1	protein_coding	exocyst subunit exo70 family protein H8	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein H8;(source:Araport11)
AT2G28610.1	protein_coding	Homeodomain-like superfamily protein	Encodes a homeodomain containing protein that  regulates lateral axis-dependent development of Arabidopsis flowers and is required for cell proliferation.  It is expressed in a restricted number of L1 cells at the lateral regions of flower primordia, floral organ primordia, and young leaf primordia.	Homeodomain-like superfamily protein;(source:Araport11)
AT2G28640.1	protein_coding	exocyst subunit exo70 family protein H5	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein H5;(source:Araport11)
AT2G28600.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G28630.1	protein_coding	3-ketoacyl-CoA synthase 12	Encodes KCS12, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 12;(source:Araport11)
AT2G28620.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Mutants have radially swollen roots but do not exhibit defects in abundance or orientation of cortical microtubules, nor are microfibrils reduced.  Cellulose synthesis is also unchanged with respect to wild type.  There is a disruption in the normal pattern of cell wall placement.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G28690.1	protein_coding	Protein of unknown function (DUF1635)		TOX high mobility group box protein, putative (DUF1635);(source:Araport11)
AT2G28680.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT2G28670.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein	Encodes a protein of unknown function that is involved in formation of the casparian strip. ESB1 is localized to the casparian strip and this localization is depended on CASP1 and 2. esb1 mutants have increased levels of suberin, disordered casparian strip and altered levels of several ions in their leaves.	Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT2G28660.1	protein_coding	Chloroplast-targeted copper chaperone protein		Chloroplast-targeted copper chaperone protein;(source:Araport11)
AT2G37990.1	protein_coding	ribosome biogenesis regulatory protein (RRS1) family protein		ribosome biogenesis regulatory protein (RRS1) family protein;(source:Araport11)
AT2G37910.1	protein_coding	cation/hydrogen exchanger, putative (CHX21)		cation/hydrogen exchanger, putative (CHX21);(source:Araport11)
AT2G37980.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT2G37900.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G37820.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G37970.1	protein_coding	SOUL heme-binding family protein		SOUL heme-binding family protein;(source:Araport11)
AT2G38070.1	protein_coding	Protein of unknown function (DUF740)	OPL2 is a homolog of OPS and also shares overlapping expression and functions. opl2/ops double mutants have more severe delay in protophloem development and additionally defects in metaphloem sieve tube development. OPL2 can functionally compensate for lack of OPS when its expression is driven by the OPS promoter.	LOW protein: UPF0503-like protein, putative (DUF740);(source:Araport11)
AT2G37810.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G37960.1	protein_coding			myosin-M heavy protein;(source:Araport11)
AT2G37890.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT2G37800.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		cysteine/histidine-rich C1 domain protein;(source:Araport11)
AT2G37880.1	protein_coding	Protein of unknown function, DUF617		MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT2G38060.1	protein_coding	phosphate transporter 4;2	Encodes an inorganic phosphate transporter (PHT4;2).	phosphate transporter 4;(source:Araport11)
AT2G37950.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G38050.1	protein_coding	3-oxo-5-alpha-steroid 4-dehydrogenase family protein	Similar to mammalian steroid-5-alpha-reductase. Involved in the brassinolide biosynthetic pathway.	3-oxo-5-alpha-steroid 4-dehydrogenase family protein;(source:Araport11)
AT2G37940.1	protein_coding	Arabidopsis Inositol phosphorylceramide synthase 2		Inositol phosphorylceramide synthase 2;(source:Araport11)
AT2G37870.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G37790.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G37930.1	protein_coding	Protein of unknown function (DUF3527)		hypothetical protein (DUF3527);(source:Araport11)
AT2G37860.1	protein_coding	Protein of unknown function (DUF3411)	Encodes a protein involved in differential development of bundle sheath and mesophyll cell chloroplasts.	reticulata-like protein, putative (DUF3411);(source:Araport11)
AT2G38040.1	protein_coding	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit	encodes the carboxyltransferase alpha subunit of acetyl-CoA carboxylase, involved in de novo fatty acid biosynthesis	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit;(source:Araport11)
AT2G37780.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G37920.1	protein_coding	copper ion transmembrane transporters		copper ion transmembrane transporter;(source:Araport11)
AT2G38020.1	protein_coding	vacuoleless1 (VCL1)	necessary for proper vacuole formation and morphogenesis in Arabidopsis	vacuoleless1 (VCL1);(source:Araport11)
AT2G37840.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G38010.1	protein_coding	Neutral/alkaline non-lysosomal ceramidase		Neutral/alkaline non-lysosomal ceramidase;(source:Araport11)
AT2G37830.1	pseudogene		Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167.	pseudogene of glycine-rich protein;(source:Araport11)
AT2G38000.1	protein_coding	chaperone protein dnaJ-related		chaperone protein dnaJ-like protein;(source:Araport11)
AT2G30370.1	protein_coding	allergen-related	Encodes a small, potentially secreted protein that acts as an inhibitor of stomatal production though likely not through direct interaction with the TMM receptor.  It is homologous to known stomatal regulators EPF1 and EPF2.	allergen-like protein;(source:Araport11)
AT2G30290.1	protein_coding	VACUOLAR SORTING RECEPTOR 2		VACUOLAR SORTING RECEPTOR 2;(source:Araport11)
AT2G30300.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G30310.1	protein_coding	GDSL-like Lipase/Acylhydrolase family protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase family protein;(source:Araport11)
AT2G30260.1	protein_coding	U2 small nuclear ribonucleoprotein B	encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled  body and the nucleus.	U2 small nuclear ribonucleoprotein B;(source:Araport11)
AT2G30320.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT2G30270.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT2G30330.1	protein_coding	GCN5L1 family protein	Putative homolog of mammalian BLOC-1 Subunit 1. Protein - protein interaction with BLOS2 and also with SNX1.Located in endomembrane system and hypothesized to be involved in endomembrane transport.	GCN5L1 family protein;(source:Araport11)
AT2G30280.1	protein_coding	RNA-directed DNA methylation 4	Encodes RDM4, a transcriptional regulator functioning in RNA-directed DNA methylation and plant development.	RNA-directed DNA methylation 4;(source:Araport11)
AT2G30340.1	protein_coding	LOB domain-containing protein 13	Lateral Organ Boundaries domain protein. LOB13 promotes lateral root formation.	LOB domain-containing protein 13;(source:Araport11)
AT2G30350.1	protein_coding	Excinuclease ABC, C subunit, N-terminal		Excinuclease ABC, C subunit, N-terminal;(source:Araport11)
AT2G30360.1	protein_coding	SOS3-interacting protein 4	Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family.Loss of function mutants show a decrease in sensitivity to high pH.Phosphorylates AHA2, a plasma membrane H+ ATPase.This phosphorylation appears to regulate the activity of the proton transporter.	SOS3-interacting protein 4;(source:Araport11)
AT2G06880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.5e-55 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT2G06890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.3e-184 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G06830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT2G06840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.5e-184 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G06850.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 4	endoxyloglucan transferase (EXGT-A1) gene	xyloglucan endotransglucosylase/hydrolase 4;(source:Araport11)
AT2G06860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1);(source:TAIR10)
AT2G06870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.3e-49 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G31520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.9e-44 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT2G31680.1	protein_coding	RAB GTPase homolog A5D		RAB GTPase homolog A5D;(source:Araport11)
AT2G31610.1	protein_coding	Ribosomal protein S3 family protein		Ribosomal protein S3 family protein;(source:Araport11)
AT2G31530.1	protein_coding	SecY protein transport family protein	Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid.  Loss-of-function mutations result in arrest at the globular stage and embryo lethality.	SecY protein transport family protein;(source:Araport11)
AT2G31690.1	protein_coding	alpha/beta-Hydrolases superfamily protein	encodes a triacylglycerol lipase located in plastoglobuli and involved in the degradation of triacylglycerol. It also has impact on leaf senescence and maintaining the structural integrity of thylakoids.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G31620.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT2G31540.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G31700.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G31550.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT2G31710.1	protein_coding	Vacuolar ATPase assembly integral membrane protein VMA21-like domain		Vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein;(source:Araport11)
AT2G31560.1	protein_coding	Protein of unknown function (DUF1685)		signal transducer/transcription protein, putative (DUF1685);(source:Araport11)
AT2G31720.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein (DUF313);(source:Araport11)
AT2G31650.1	protein_coding	homologue of trithorax	Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Involved in trimethylating histone H3-lysine 4. Involved in the formation, placement, and identity of flower organs. Role in regulation of homeotic genes. Functions as a receptor of  phosphatidylinositol 5-phosphate. Localizes to cytoplasm, plasma membrane and nuclei, shifting to nuclei in the presence of PI5P.	homologue of trithorax;(source:Araport11)
AT2G31570.1	protein_coding	glutathione peroxidase 2	glutathione peroxidase GPx	glutathione peroxidase 2;(source:Araport11)
AT2G31580.1	protein_coding	tRNAHis guanylyltransferase	ICA1 is a nuclear localized member of the tRNA(His) guanylyl transferase superfamily. Loss of function alleles show increased sensitivity to growth at high temperatures defects in cell cycle progression and DNA repair.	tRNAHis guanylyltransferase;(source:Araport11)
AT2G31660.1	protein_coding	ARM repeat superfamily protein	SAD2 (super sensitive to ABA and drought 2) encodes an importin beta-domain family protein likely to be involved in nuclear transport in ABA signaling.  Subcellular localization of GFP-tagged SAD2 showed a predominantly nuclear localization, consistent with a role for SAD2 in nuclear transport.  Mutation of SAD2 in Arabidopsis alters abscisic acid sensitivity.  SAD2 was ubiquitously expressed at low levels in all tissues except flowers.  SAD2 expression was not induced by ABA or stress. Loss of function mutations in SAD2 exhibit increased tolerance for UV stress,  increased production of UV protective secondary metabolites and suppression of nuclear localization of MYB4 (a repressor of UV stress response genes). Regulates microRNA activity.	ARM repeat superfamily protein;(source:Araport11)
AT2G31590.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G31670.1	protein_coding	Stress responsive alpha-beta barrel domain protein		Stress responsive alpha-beta barrel domain protein;(source:Araport11)
AT2G31510.1	protein_coding	IBR domain-containing protein		IBR domain-containing protein;(source:Araport11)
AT2G31600.1	protein_coding			INO80 complex subunit D-like protein;(source:Araport11)
AT2G22660.1	protein_coding	Protein of unknown function (duplicated DUF1399)	Encodes a member of a family of DUF1399 domain containing proteins. GRDP1 is involved in germination and response to ABA. Loss of function mutants have reduced germination in the presence of osmotic stressors.	DNA-binding protein, putative (duplicated DUF1399);(source:Araport11)
AT2G22740.1	protein_coding	SU(VAR)3-9 homolog 6	Encodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation.  The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs but has a preference for the latter two. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.	SU(VAR)3-9 homolog 6;(source:Araport11)
AT2G22670.1	protein_coding	indoleacetic acid-induced protein 8	Encodes a transcriptional repressor of the auxin response that is auxin inducible and is involved in lateral root formation. The mRNA is cell-to-cell mobile.	indoleacetic acid-induced protein 8;(source:Araport11)
AT2G22680.1	protein_coding	Zinc finger (C3HC4-type RING finger) family protein		Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT2G22690.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT2G22590.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G22600.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT2G22710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G01980.1);(source:TAIR10)
AT2G22610.1	protein_coding	Di-glucose binding protein with Kinesin motor domain		Di-glucose binding protein with Kinesin motor domain-containing protein;(source:Araport11)
AT2G22720.1	protein_coding	SPT2 chromatin protein		SPT2 chromatin protein;(source:Araport11)
AT2G22620.1	protein_coding	Rhamnogalacturonate lyase family protein		Rhamnogalacturonate lyase family protein;(source:Araport11)
AT2G22730.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G22630.1	protein_coding	AGAMOUS-like 17	Encodes a MADs domain containing protein involved in promoting flowering. Loss of function mutations show delayed flowering in long days and reduced levels of LFY and AP1 expression.	AGAMOUS-like 17;(source:Araport11)
AT2G22640.1	protein_coding	BRICK1, putative	Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Required for accumulation of SCAR1 protein in vivo. Selectively stabilizes SCAR2.	BRICK1;(source:Araport11)
AT2G22650.1	protein_coding	FAD-dependent oxidoreductase family protein		FAD-dependent oxidoreductase family protein;(source:Araport11)
AT2G29020.1	protein_coding	Rab5-interacting family protein		Rab5-interacting family protein;(source:Araport11)
AT2G29110.1	protein_coding	glutamate receptor 2.8	member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.8;(source:Araport11)
AT2G29040.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT2G29010.1	pseudogene			pseudogene of Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G29050.1	protein_coding	RHOMBOID-like 1		RHOMBOID-like 1;(source:Araport11)
AT2G29120.1	protein_coding	glutamate receptor 2.7	member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.7;(source:Araport11)
AT2G29060.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT2G29130.1	protein_coding	laccase 2	putative laccase, knockout mutant had reduced root elongation under PEG-induced dehydration	laccase 2;(source:Araport11)
AT2G29070.1	protein_coding	Ubiquitin fusion degradation UFD1 family protein		Ubiquitin fusion degradation UFD1 family protein;(source:Araport11)
AT2G29080.1	protein_coding	FTSH protease 3	encodes an FtsH protease that is localized to the mitochondrion	FTSH protease 3;(source:Araport11)
AT2G28960.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G29090.1	protein_coding	cytochrome P450, family 707, subfamily A, polypeptide 2	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.	cytochrome P450, family 707, subfamily A, polypeptide 2;(source:Araport11)
AT2G28970.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G29100.1	protein_coding	glutamate receptor 2.9	member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.9;(source:Araport11)
AT2G28980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.3e-43 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G28990.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G29000.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G26430.1	protein_coding	arginine-rich cyclin 1	Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.	arginine-rich cyclin 1;(source:Araport11)
AT2G26510.1	protein_coding	Xanthine/uracil permease family protein	Encodes a plasma-membrane localized nucleobase transporter capable of transporting adenine, guanine, uracil and hypoxanthine. Likely to be a proton-nucleobase symporter.	Xanthine/uracil permease family protein;(source:Araport11)
AT2G26440.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT2G26590.1	protein_coding	regulatory particle non-ATPase 13		regulatory particle non-ATPase 13;(source:Araport11)
AT2G26520.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G26450.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT2G26600.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT2G26460.1	protein_coding	RED family protein	Encodes SMU2, a protein involved in RNA splicing.	RED family protein;(source:Araport11)
AT2G26410.1	protein_coding	IQ-domain 4	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 4;(source:Araport11)
AT2G26610.1	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G26530.1	protein_coding	Protein of unknown function (DUF1645)	Pheromone receptor-like protein involved in the early elicitor signaling events which occur within minutes and include ion fluxes across the plasma membrane, activation of MPKs and the formation of ROS related to PGPS1 and WRKY33.	AR781, pheromone receptor-like protein (DUF1645);(source:Araport11)
AT2G26470.1	protein_coding			embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein;(source:Araport11)
AT2G26420.1	protein_coding	1-phosphatidylinositol-4-phosphate 5-kinase 3	Encodes a phosphatidylinositol-4-phosphate 5-kinase. Exclusively expressed in roots. Essential for root hair growth.	1-phosphatidylinositol-4-phosphate 5-kinase 3;(source:Araport11)
AT2G26620.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G26540.1	protein_coding	uroporphyrinogen-III synthase family protein	Encodes a uroporphyrinogen-III synthase involved in tetrapyrrole biosynthesis. The protein localizes to the chloroplast.  Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype	uroporphyrinogen-III synthase family protein;(source:Araport11)
AT2G26480.1	protein_coding	UDP-glucosyl transferase 76D1		UDP-glucosyl transferase 76D1;(source:Araport11)
AT2G26360.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT2G26550.1	protein_coding	heme oxygenase 2	Encodes a heme oxygenase-like protein lacking the conserved histidine residue at the active site that is usually involved in heme-iron coordination.  It is unable to bind and degrade heme.  Mutant analyses suggest a role in photomorphogenesis.  The protein can bind the heme precursor, proto IX, which could be biologically significant and point to a role in the regulation of the two tetrapyrrole biosynthetic pathways.	heme oxygenase 2;(source:Araport11)
AT2G26490.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	JGB contains seven WD40 repeats and is highly conserved in flowering plants. Overexpression inhibits pollen germination. suggesting JGB is a negative regulator of pollen germination	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G26630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);transposase IS4 family protein,  contains Pfam profile: PF01609 transposase DDE domain;(source:TAIR10)
AT2G26560.1	protein_coding	phospholipase A 2A	Encodes a lipid acyl hydrolase with wide substrate  specificity that accumulates upon infection by fungal  and bacterial pathogens. Protein is localized in the cytoplasm in healthy leaves, and in membranes in infected cells. Plays a role in cell death and differentially affects the accumulation of oxylipins. Contributes to resistance to virus.	phospholipase A 2A;(source:Araport11)
AT2G26500.1	protein_coding	cytochrome b6f complex subunit (petM), putative		cytochrome b6f complex subunit (petM);(source:Araport11)
AT2G26370.1	protein_coding	MD-2-related lipid recognition domain-containing protein		MD-2-related lipid recognition domain-containing protein;(source:Araport11)
AT2G26570.1	protein_coding	Plant protein of unknown function (DUF827)	Encodes a coiled-coil protein WEB1 (weak chloroplast movement under blue light 1).  WEB1, together with another coiled-coil protein WEB2/PMI2 (At1g66840), maintains the chloroplast photorelocation movement velocity.	WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827);(source:Araport11)
AT2G26380.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT2G26580.1	protein_coding	plant-specific transcription factor YABBY family protein		plant-specific transcription factor YABBY family protein;(source:Araport11)
AT2G26390.1	protein_coding	Serine protease inhibitor (SERPIN) family protein		Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT2G26400.1	protein_coding	acireductone dioxygenase 3	Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD’)family.	acireductone dioxygenase 3;(source:Araport11)
AT2G48030.1	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT2G48060.1	protein_coding			piezo-type mechanosensitive ion channel component;(source:Araport11)
AT2G48070.1	protein_coding	resistance to phytophthora 1	Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1).  Involved in immune response to Phytophthora brassicae.  rph1 mutant plants (in Ws background) are susceptible to P. brassicae.	resistance to phytophthora 1;(source:Araport11)
AT2G48000.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G48080.1	protein_coding	oxidoreductase, 2OG-Fe(II) oxygenase family protein		oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT2G48010.1	protein_coding	receptor-like kinase in in flowers 3	receptor-like serine/threonine kinase (RKF3) The mRNA is cell-to-cell mobile.	receptor-like kinase in in flowers 3;(source:Araport11)
AT2G48090.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G48020.1	protein_coding	Major facilitator superfamily protein	Encodes a zinc transporter ZIF2. Expression of ZIF2 is regulated by alternative splicing.	Major facilitator superfamily protein;(source:Araport11)
AT2G48100.1	protein_coding	Exonuclease family protein		Exonuclease family protein;(source:Araport11)
AT3G51760.1	protein_coding	Protein of unknown function (DUF688)		hypothetical protein (DUF688);(source:Araport11)
AT3G51850.1	protein_coding	calcium-dependent protein kinase 13	member of Calcium Dependent Protein Kinase The mRNA is cell-to-cell mobile.	calcium-dependent protein kinase 13;(source:Araport11)
AT3G51770.1	protein_coding	tetratricopeptide repeat (TPR)-containing protein	Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G51860.1	protein_coding	cation exchanger 3		cation exchanger 3;(source:Araport11)
AT3G51780.1	protein_coding	BCL-2-associated athanogene 4	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. BD domain of ATBAG4 had highest similarity to human DB domain of BAG protein. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	BCL-2-associated athanogene 4;(source:Araport11)
AT3G51870.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT3G51790.1	protein_coding	transmembrane protein G1P-related 1	Encodes a heme-binding protein located in the mitochondrial inner membrane that is involved in cytochrome c maturation.	transmembrane protein G1P-related 1;(source:Araport11)
AT3G51880.1	protein_coding	high mobility group B1	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.	high mobility group B1;(source:Araport11)
AT3G51800.1	protein_coding	metallopeptidase M24 family protein	putative nuclear DNA-binding protein G2p (AtG2) mRNA,	metallopeptidase M24 family protein;(source:Araport11)
AT3G51890.1	protein_coding	Clathrin light chain protein		Clathrin light chain protein;(source:Araport11)
AT3G51810.1	protein_coding	Stress induced protein	Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA.  The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.	Stress induced protein;(source:Araport11)
AT3G51820.1	protein_coding	UbiA prenyltransferase family protein	Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP.	UbiA prenyltransferase family protein;(source:Araport11)
AT3G51830.1	protein_coding	SAC domain-containing protein 8	putative transmembrane protein G5p (AtG5) mRNA, complete. autophagy-related (ATG) gene	SAC domain-containing protein 8;(source:Araport11)
AT3G51840.1	protein_coding	acyl-CoA oxidase 4	Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain acyl-CoA and are resistant to 2,4-dichlorophenoxybutyric acid, which is converted to the herbicide and auxin analogue 2,4-dichlorophenoxyacetic acid by beta-oxidation. Despite the almost complete loss of short-chain activity, lipid catabolism and seedling growth and establishment was unaltered in the acx4 mutant. However, double mutants in acx3acx4 (acx3 encodes medium chain acyl CoA oxidase) were not viable and arrested during embryogenesis.	acyl-CoA oxidase 4;(source:Araport11)
AT3G05810.1	protein_coding			IGR motif protein;(source:Araport11)
AT3G05820.1	protein_coding	invertase H	Encodes a putative plastid-targeted alkaline/neutral invertase.Expression is induced by salt, osmotic and ABA treatments. Loss of function affects mitochondrial functioning and ROS production.	invertase H;(source:Araport11)
AT3G05770.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G05830.1	protein_coding		Encodes alpha-helical IF (intermediate filament)-like protein.NEAP1 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.	spindle pole body component-like protein;(source:Araport11)
AT3G05780.1	protein_coding	lon protease 3	Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790).  Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells.  Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.	lon protease 3;(source:Araport11)
AT3G05840.1	protein_coding	Protein kinase superfamily protein	encodes a SHAGGY-like kinase involved in meristem organization.	Protein kinase superfamily protein;(source:Araport11)
AT3G05790.1	protein_coding	lon protease 4	Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790).  Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells.  Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.	lon protease 4;(source:Araport11)
AT3G05850.1	protein_coding		Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1), AT2G30640 (MUG2), AT1G06740 (MUG3), AT5G16505 (MUG4), AT3G06940 (MUG5), AT5G48965 (MUG6), AT3G05850 (MUG7) and AT5G34853 (MUG8).	MuDR family transposase;(source:Araport11)
AT3G05800.1	protein_coding	AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1		AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1;(source:Araport11)
AT3G05860.1	protein_coding	MADS-box transcription factor family protein		MADS-box transcription factor family protein;(source:Araport11)
AT3G05870.1	protein_coding	anaphase-promoting complex/cyclosome 11	Subunit of the anaphase promoting complex, a ubiquitin ligase complex that regulates progression through the cell cycle.	anaphase-promoting complex/cyclosome 11;(source:Araport11)
AT3G05880.1	protein_coding	Low temperature and salt responsive protein family	Induced by low temperatures, dehydration and salt stress and ABA. Encodes a small (54 amino acids), highly hydrophobic protein that bears two potential transmembrane domains.	Low temperature and salt responsive protein family;(source:Araport11)
AT3G05750.1	protein_coding		Encodes a member of the TRM superfamily, that plays a role in preprophase band formation during plant cell division and controls the robustness of the orientation of that cell division.	serine-rich adhesin for platelets-like protein;(source:Araport11)
AT3G05760.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT3G02400.1	protein_coding	SMAD/FHA domain-containing protein 	Contains a single exon and encodes a ~66-kD protein with a Forkhead- Associated domain. Binds the promoter of PEX11b and expression is correlated with negative regulation of PEX11b.	SMAD/FHA domain-containing protein;(source:Araport11)
AT3G02330.1	protein_coding	MEF13 is an member of the E-domain pentatricopeptide repeat (PPR) superfamily. It is involved in mitochondrial mRNA editing with at least 8 known targets.	Involved in cytidine to uridine editing of the mitochondrial mRNA AtMg00510.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G02340.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G02350.1	protein_coding	galacturonosyltransferase 9	Encodes a protein with  putative galacturonosyltransferase activity. The mRNA is cell-to-cell mobile.	galacturonosyltransferase 9;(source:Araport11)
AT3G02360.1	protein_coding	6-phosphogluconate dehydrogenase family protein		6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT3G11040.1	protein_coding	Glycosyl hydrolase family 85 	Encodes a cytosolic beta-endo-N-acetyglucosaminidase (ENGase). ENGases N-glycans cleave the O-glycosidic linkage between the two GlcNAc residues of the N-glycan core structure and thus generate a protein with a single GlcNAc attached to asparagine.	Glycosyl hydrolase family 85;(source:Araport11)
AT3G11250.1	protein_coding	Ribosomal protein L10 family protein		Ribosomal protein L10 family protein;(source:Araport11)
AT3G11260.1	protein_coding	WUSCHEL related homeobox 5	WOX5 is a member of the Wuschel (WUS) family of homeodomain transcription factors and is required for quiescent center (QC) function and columella stem cell maintenance in the root meristem. It is expressed in the QC and moves to the columella stem cells  where it represses their differentiation. WOX5 binds members of the Topless family of transcriptional co-repressors.	WUSCHEL related homeobox 5;(source:Araport11)
AT3G11270.1	protein_coding	Mov34/MPN/PAD-1 family protein		Mov34/MPN/PAD-1 family protein;(source:Araport11)
AT3G11290.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT3G11310.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT3G11230.1	protein_coding	Yippee family putative zinc-binding protein		Yippee family putative zinc-binding protein;(source:Araport11)
AT3G11320.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT3G11240.1	protein_coding	arginine-tRNA protein transferase 2	Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2.  Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6).  PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. ATE2 has also been show to be involved in the response to pathogens.	arginine-tRNA protein transferase 2;(source:Araport11)
AT3G11280.1	protein_coding	Duplicated homeodomain-like superfamily protein	Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT3G11330.1	protein_coding	plant intracellular ras group-related LRR 9	Encodes PIRL9, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.	plant intracellular ras group-related LRR 9;(source:Araport11)
AT3G11340.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a glucosyltransferase that conjugates isoleucic acid and modulates plant defense and senescence.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G50260.1	protein_coding	cooperatively regulated by ethylene and jasmonate 1	Encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. Involved in defense and freezing stress responses. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. The mRNA is cell-to-cell mobile.	cooperatively regulated by ethylene and jasmonate 1;(source:Araport11)
AT3G50190.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G50270.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G50360.1	protein_coding	centrin2	CAM like protein with four EF-hand domains. Binds calcium. Loss of function mutants affect ABA regulation of guard cell channels  and accumulation of stress responsive transcripts(PMID:28603528).	centrin2;(source:Araport11)
AT3G50200.1	protein_coding	Plant protein of unknown function (DUF247)		hypothetical protein (DUF247);(source:Araport11)
AT3G50280.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G50370.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G50210.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G50290.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G50380.1	protein_coding	Protein of unknown function (DUF1162)		vacuolar protein sorting-associated protein, putative (DUF1162);(source:Araport11)
AT3G50220.1	protein_coding	Protein of unknown function (DUF579)	Encode a DUF579 (domain of unknown function 579) containing protein essential for normal xylan synthesis and deposition in the secondary cell wall.	IRREGULAR XYLEM protein (DUF579);(source:Araport11)
AT3G50300.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G50390.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G50230.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G50310.1	protein_coding	mitogen-activated protein kinase kinase kinase 20	Encodes a member of MEKK subfamily. Target promoter of the male germline-specific transcription factor DUO1. Involved in osmotic stress response via regulation of MPK6 activity. It also plays an important role in regulating cell division and cell elongation in the primary root meristematic and elongation areas. Mutants show defects in root microtubule organization.It phosphorylates MPK18 and MKK3.It is a positive regulator of ABA-induced stomatal closure that acts by  phosphorylating MKK5.	mitogen-activated protein kinase kinase kinase 20;(source:Araport11)
AT3G50400.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G50320.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G50410.1	protein_coding	OBF binding protein 1	Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development.	OBF binding protein 1;(source:Araport11)
AT3G50240.1	protein_coding	ATP binding microtubule motor family protein	Encodes a kinesin-related protein.	ATP binding microtubule motor family protein;(source:Araport11)
AT3G50250.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G50330.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a bHLH transcription factor that is involved in transmitting tract and stigma development.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G50340.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G50350.1	protein_coding	Protein of unknown function (DUF1685)		membrane insertase, putative (DUF1685);(source:Araport11)
AT3G09620.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G09630.1	protein_coding	Ribosomal protein L4/L1 family		Ribosomal protein L4/L1 family;(source:Araport11)
AT3G09640.1	protein_coding	ascorbate peroxidase 2	Encodes a cytosolic ascorbate peroxidase APX2.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	ascorbate peroxidase 2;(source:Araport11)
AT3G09650.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G09660.1	protein_coding	minichromosome maintenance 8	Encodes a minichromosome maintenance protein that is involved with RAD51 in a backup pathway that repairs meiotic double strand breaks without giving meiotic crossovers when the major pathway, which relies on DMC1, fails.	minichromosome maintenance 8;(source:Araport11)
AT3G09670.1	protein_coding	Tudor/PWWP/MBT superfamily protein	PWWP domain protein involved in regulation of FLC and flowering time.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT3G09570.1	protein_coding	Lung seven transmembrane receptor family protein		Lung seven transmembrane receptor family protein;(source:Araport11)
AT3G09680.1	protein_coding	Ribosomal protein S12/S23 family protein		Ribosomal protein S12/S23 family protein;(source:Araport11)
AT3G09480.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT3G09690.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G09490.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G09500.1	protein_coding	Ribosomal L29 family protein 		Ribosomal L29 family protein;(source:Araport11)
AT3G09510.1	protein_coding	Ribonuclease H-like superfamily protein		Ribonuclease H-like superfamily protein;(source:Araport11)
AT3G09520.1	protein_coding	exocyst subunit exo70 family protein H4	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein H4;(source:Araport11)
AT3G09530.1	protein_coding	exocyst subunit exo70 family protein H3	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein H3;(source:Araport11)
AT3G09540.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G09700.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G09550.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT3G09560.1	protein_coding	Lipin family protein	The PAH1 gene encodes a phosphatidate phosphohydrolase. Mutant analysis revealed its involvement in galactolipid synthesis pathway, and the membrane lipid remodeling. The pah1pah2 double-mutant showed enhanced Al-susceptibility under low-P conditions, but there was no significant differences in Al tolerance between pah1pah2 and wild type when they were grown in a solution containing 35 &#956;M Pi.	Lipin family protein;(source:Araport11)
AT3G09710.1	protein_coding	IQ-domain 1	Ca(2+)-dependent calmodulin-binding protein. Targeted to the nucleus. Involved in glucosinolate metabolism in response to biotic challenge. Expressed in vascular tissue.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 1;(source:Araport11)
AT3G09580.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT3G09720.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G09590.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT3G09730.1	protein_coding			POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein;(source:Araport11)
AT3G09600.1	protein_coding	Homeodomain-like superfamily protein	Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. Functions as a transcriptional activator of evening element containing clock genes. Involved in heat shock response.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G09740.1	protein_coding	syntaxin of plants 71	syntaxin of plants 71 (SYP71)	syntaxin of plants 71;(source:Araport11)
AT3G09750.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G09760.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G30780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.4e-100 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G30790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.0e-149 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT3G30800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.6e-27 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii);(source:TAIR10)
AT3G46670.1	protein_coding	UDP-glucosyl transferase 76E11		UDP-glucosyl transferase 76E11;(source:Araport11)
AT3G46490.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G46500.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G46580.1	protein_coding	methyl-CPG-binding domain protein 5	Protein containing a putative methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain protein 5;(source:Araport11)
AT3G46510.1	protein_coding	plant U-box 13	Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.  Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. Involved in ubiquitination of pattern recognition receptor FLS2.	plant U-box 13;(source:Araport11)
AT3G46590.1	protein_coding	TRF-like 1	Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers.	TRF-like 1;(source:Araport11)
AT3G46680.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G46600.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT3G46520.1	protein_coding	actin-12	Member of actin subclass composed of ACT12 and ACT4.  RNA is expressed at very low levels in vegetative organs, low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues, tapetum, developing and mature pollen, the root cap and in a ring of pericycle tissues during lateral root initiation and early development.	actin-12;(source:Araport11)
AT3G46610.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein	Chloroplast-localized PPR protein required for the translation of the psbJ and psbN open reading frames. TPJ(2019) shows that LPE1 is not required for psbA translation, in contrast to previous results (PNAS 2018).	Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT3G46530.1	protein_coding	NB-ARC domain-containing disease resistance protein	Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance. The mRNA is cell-to-cell mobile.	NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT3G46620.1	protein_coding	zinc finger (C3HC4-type RING finger) family protein	Encodes an ABA- and drought-induced RING-DUF1117 gene whose mutation results in hyposensitive phenotypes toward ABA in terms of germination rate and stomatal closure and markedly reduced tolerance to drought stress relative to wild-type plants.	zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT3G46540.1	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT3G46550.1	protein_coding	Fasciclin-like arabinogalactan family protein	Isolated in a screen for salt hypersensitive mutants. Mutants have thinner cell walls, abnormal siliques and root growth is inhibited under salt stress. The gene has similarity to arabinogalactan proteins and domains associated with cell adhesion.SOS5 is required for normal mucilage adherence to seeds.	Fasciclin-like arabinogalactan family protein;(source:Araport11)
AT3G46630.1	protein_coding	Protein of unknown function (DUF3223)		DCL protein (DUF3223);(source:Araport11)
AT3G46560.1	protein_coding	Tim10/DDP family zinc finger protein	Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus.  Together with AtTIM10, AtTIM9 is non-redundantly essential for maintaining mitochondrial function of early embryo proper cells and endosperm free-nuclei.	Tim10/DDP family zinc finger protein;(source:Araport11)
AT3G46640.1	protein_coding	Homeodomain-like superfamily protein	Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock.   LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness.  It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. The mRNA is cell-to-cell mobile.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G46570.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT3G46650.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G46660.1	protein_coding	UDP-glucosyl transferase 76E12		UDP-glucosyl transferase 76E12;(source:Araport11)
AT3G46040.1	protein_coding	ribosomal protein S15A D	Regulated by TCP20. The mRNA is cell-to-cell mobile.	ribosomal protein S15A D;(source:Araport11)
AT3G46130.1	protein_coding	myb domain protein 48	Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.	myb domain protein 48;(source:Araport11)
AT3G46050.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G46140.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G46060.1	protein_coding	RAB GTPase homolog 8A	small GTP-binding protein (ara-3) The mRNA is cell-to-cell mobile.	RAB GTPase homolog 8A;(source:Araport11)
AT3G46230.1	protein_coding	heat shock protein 17.4	member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seeds	heat shock protein 17.4;(source:Araport11)
AT3G46070.1	protein_coding	C2H2-type zinc finger family protein		C2H2-type zinc finger family protein;(source:Araport11)
AT3G46150.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G46240.1	protein_coding			ER protein carbohydrate-binding protein;(source:Araport11)
AT3G46080.1	protein_coding	C2H2-type zinc finger family protein		C2H2-type zinc finger family protein;(source:Araport11)
AT3G46160.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G46250.1	pseudogene			pseudogene of receptor protein kinase-like protein;(source:Araport11)
AT3G46090.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT3G46170.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G46260.1	protein_coding	protein kinase-related		kinase-like protein;(source:Araport11)
AT3G46100.1	protein_coding	Histidyl-tRNA synthetase 1	histidyl-tRNA synthetase	Histidyl-tRNA synthetase 1;(source:Araport11)
AT3G46180.1	protein_coding	UDP-galactose transporter 5		UDP-galactose transporter 5;(source:Araport11)
AT3G46270.1	protein_coding	receptor protein kinase-related		receptor protein kinase-like protein;(source:Araport11)
AT3G46190.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G46280.1	protein_coding	protein kinase-related		kinase-like protein;(source:Araport11)
AT3G46110.1	protein_coding	Domain of unknown function (DUF966)	DUF966 domain containing protein, expressed during embryogenesis.	UPSTREAM OF FLC-like protein (DUF966);(source:Araport11)
AT3G46200.1	protein_coding	nudix hydrolase homolog 9	Encodes a GDP-d-mannose pyrophosphohydrolase that is involved in the regulation of GDP-d-Man levels affecting ammonium sensitivity via modulation of protein N-glycosylation in the roots.	nudix hydrolase homolog 9;(source:Araport11)
AT3G46120.1	protein_coding	purple acid phosphatase 19		purple acid phosphatase 19;(source:Araport11)
AT3G46290.1	protein_coding	hercules receptor kinase 1	Encodes HERCULES1 (HERK1), a receptor kinase regulated by Brassinosteroids and required for cell elongation during vegetative growth.	hercules receptor kinase 1;(source:Araport11)
AT3G46210.1	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT3G46220.1	protein_coding			E3 UFM1-protein ligase-like protein;(source:Araport11)
AT3G02950.1	protein_coding	Tho complex subunit 7/Mft1p	Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	Tho complex subunit 7/Mft1p;(source:Araport11)
AT3G02875.1	protein_coding	Peptidase M20/M25/M40 family protein	Hydrolyzes amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Leu and IAA-Phe. Uses Mg and Co ions as cofactors.	Peptidase M20/M25/M40 family protein;(source:Araport11)
AT3G02940.1	protein_coding	myb domain protein 107	Encodes a putative transcription factor (MYB107).	myb domain protein 107;(source:Araport11)
AT3G02870.1	protein_coding	Inositol monophosphatase family protein	Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis.	Inositol monophosphatase family protein;(source:Araport11)
AT3G02790.1	protein_coding	zinc finger (C2H2 type) family protein		zinc finger (C2H2 type) family protein;(source:Araport11)
AT3G02930.1	protein_coding	Plant protein of unknown function (DUF827)	Encodes a microtubule-associated protein.	weak chloroplast movement under blue light protein (DUF827);(source:Araport11)
AT3G03030.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G02780.1	protein_coding	isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2	Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.	isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2;(source:Araport11)
AT3G02920.1	protein_coding	Replication protein A, subunit RPA32		Replication protein A, subunit RPA32;(source:Araport11)
AT3G02860.1	protein_coding	zinc ion binding	Encodes a C2H2 zinc finger protein that is localized to the nucleus and is translocated to the cytoplasm in response to ABA or oxidative stress.  It functions as a positive regulator countering ABA to break seed dormancy and maintain ROS homeostasis in response to ABA and oxidative stress.	zinc ion binding protein;(source:Araport11)
AT3G03000.1	protein_coding	EF hand calcium-binding protein family	Calmodulin like protein localized in the plant vacuolar compartment  with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner	EF hand calcium-binding protein family;(source:Araport11)
AT3G02770.1	protein_coding	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase		Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase;(source:Araport11)
AT3G02910.1	protein_coding	AIG2-like (avirulence induced gene) family protein		AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT3G02850.1	protein_coding	STELAR K+ outward rectifier	Encodes SKOR, a member of Shaker family potassium ion (K+) channel.  This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).  Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+. Involved in response to low potassium.	STELAR K+ outward rectifier;(source:Araport11)
AT3G02990.1	protein_coding	heat shock transcription factor A1E	member of Heat Stress Transcription Factor (Hsf) family The mRNA is cell-to-cell mobile.	heat shock transcription factor A1E;(source:Araport11)
AT3G03020.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G02840.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G02900.1	protein_coding			Low-density receptor-like protein;(source:Araport11)
AT3G02980.1	protein_coding	MEIOTIC CONTROL OF CROSSOVERS1	Encodes MEIOTIC CONTROL OF CROSSOVERS1 (MCC1), a GCN5-related histone N-acetyltransferase. MCC1 appeared to be required in meiosis for normal chiasma number and distribution and for chromosome segregation.  Activation tagging line has increased level of histone H3 acetylation.	MEIOTIC CONTROL OF CROSSOVERS1;(source:Araport11)
AT3G02760.1	protein_coding	Class II aaRS and biotin synthetases superfamily protein		Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT3G02830.1	protein_coding	zinc finger protein 1	Encodes a zinc finger protein that binds to PORA mRNA in vivo and recruits the Pfr form of phytochrome to the 5&#8242;-UTR of PORA mRNA to regulate translation of the mRNA.	zinc finger protein 1;(source:Araport11)
AT3G02970.1	protein_coding	EXORDIUM like 6		EXORDIUM like 6;(source:Araport11)
AT3G02750.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G02890.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G02960.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G02880.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G02820.1	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT3G02740.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G02810.1	protein_coding	Protein kinase superfamily protein	Encodes a receptor-like cytoplasmic kinase localized in the membrane of pollen tube tip regions that controls micropylar pollen tube guidance in Arabidopsis.	Protein kinase superfamily protein;(source:Araport11)
AT3G02730.1	protein_coding	thioredoxin F-type 1	Encodes a type-f thioredoxin.  Has a role in the short-term activation of carbon metabolism. Loss affects growth under short-day conditions.	thioredoxin F-type 1;(source:Araport11)
AT3G02800.1	protein_coding	Tyrosine phosphatase family protein	Encodes an atypical dual-speci&#64257;city phosphatase.	Tyrosine phosphatase family protein;(source:Araport11)
AT3G03010.1	protein_coding	Peptidyl-tRNA hydrolase II (PTH2) family protein		Peptidyl-tRNA hydrolase II (PTH2) family protein;(source:Araport11)
AT3G46960.1	protein_coding	RNA helicase, ATP-dependent, SK12/DOB1 protein	The gene encodes a DExD&#8260;H box RNA helicase, involved in the regulation of K+ deprivation stress response.SKI2 encodes the RNA helicase subunit of the SKI complex. Mutation of SKI2 leads to production of secondary siRNAs from miRNA target transcripts	RNA helicase, ATP-dependent, SK12/DOB1 protein;(source:Araport11)
AT3G47050.1	protein_coding	Glycosyl hydrolase family protein		Glycosyl hydrolase family protein;(source:Araport11)
AT3G46970.1	protein_coding	alpha-glucan phosphorylase 2	Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.	alpha-glucan phosphorylase 2;(source:Araport11)
AT3G47060.1	protein_coding	FTSH protease 7	encodes an FtsH protease that is localized to the chloroplast	FTSH protease 7;(source:Araport11)
AT3G46980.1	protein_coding	phosphate transporter 4;3	Encodes an inorganic phosphate transporter (PHT4;3).	phosphate transporter 4;(source:Araport11)
AT3G47150.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G47070.1	protein_coding			thylakoid soluble phosphoprotein;(source:Araport11)
AT3G47160.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G46990.1	protein_coding	Protein of unknown function (DUF740)		DUF740 family protein, putative (DUF740);(source:Araport11)
AT3G47250.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G47080.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G47000.1	protein_coding	Glycosyl hydrolase family protein		Glycosyl hydrolase family protein;(source:Araport11)
AT3G47170.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G47090.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G47010.1	protein_coding	Glycosyl hydrolase family protein		Glycosyl hydrolase family protein;(source:Araport11)
AT3G47180.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G47100.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G47020.1	protein_coding	F-box and associated interaction domains-containing protein	E3 ubiquitin ligase involved in SGS3 degradation leading to inhibited biosynthesis of tasiRNA. The heat-induced activation of SGIP1 is inherited in the progeny.	F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G47190.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G47110.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G47030.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G47200.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G47120.1	protein_coding	RNA recognition motif (RRM)-containing protein	GDS1is a member of the  C3H-type zinc finger family of proteins. Mutants display growth defects due to reduced cell number and size.	RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT3G47040.1	protein_coding	Glycosyl hydrolase family protein		Glycosyl hydrolase family protein;(source:Araport11)
AT3G47210.1	protein_coding	Plant protein of unknown function (DUF247)		hypothetical protein (DUF247);(source:Araport11)
AT3G47130.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G47220.1	protein_coding	phosphatidylinositol-speciwc phospholipase C9	Encodes a plasma membrane-localized phosphoinositide-specific phospholipase C with a role in thermotolerance.	phosphatidylinositol-speciwc phospholipase C9;(source:Araport11)
AT3G47140.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G47230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12505.1);(source:TAIR10)
AT3G47240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54926.1);(source:TAIR10)
AT3G10700.1	protein_coding	galacturonic acid kinase	Encodes a GHMP kinase family protein that acts as a galacturonic acid-1-phosphate kinase that catalyzes the production of galacturonic acid-1-phosphate. This is a precursor of the important cell wall building block UDP-galacturonic acid.  Based on gene trap line GT8007, the gene appears to be expressed in a petal and stamen-specific manner, between flower stages 8 to 11, however, later RT-qPCR analysis demonstrates that the transcript is present throughout the plant in all tissues tested.	galacturonic acid kinase;(source:Araport11)
AT3G10610.1	protein_coding	Ribosomal S17 family protein		Ribosomal S17 family protein;(source:Araport11)
AT3G10540.1	protein_coding	3-phosphoinositide-dependent protein kinase		3-phosphoinositide-dependent protein kinase;(source:Araport11)
AT3G10600.1	protein_coding	cationic amino acid transporter 7	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.	cationic amino acid transporter 7;(source:Araport11)
AT3G10530.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G10450.1	protein_coding	serine carboxypeptidase-like 7		serine carboxypeptidase-like 7;(source:Araport11)
AT3G10590.1	protein_coding	Duplicated homeodomain-like superfamily protein		Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT3G10440.1	protein_coding	Shugoshin C terminus	Encodes a protein that protects meiotic centromere cohesion.	Shugoshin C terminus;(source:Araport11)
AT3G10580.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G10520.1	protein_coding	haemoglobin 2	Encodes a class 2 non-symbiotic hemoglobin.  Over-expression of AHb2 in seeds led to a 40% increase in the total fatty acid content of developing and mature seeds in three subsequent generations. This was mainly due to an increase in the poly-unsaturated C18:2 (omega-6) linoleic and C18:3 (omega-3) alpha-linolenic acids.	hemoglobin 2;(source:Araport11)
AT3G10650.1	protein_coding		Encodes a nucleoporin involved in mRNA export from the nucleus.  It is also involved in the regulation of nuclear morphology.	nuclear pore complex protein;(source:Araport11)
AT3G10430.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G10510.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G10640.1	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT3G10570.1	protein_coding	cytochrome P450, family 77, subfamily A, polypeptide 6	member of CYP77A	cytochrome P450, family 77, subfamily A, polypeptide 6;(source:Araport11)
AT3G10500.1	protein_coding	NAC domain containing protein 53	Encodes a transcriptional activator that is associated with the plasma membrane in a dormant form and is proteolytically cleaved to create a form that can enter the nucleus.  It is thought to promote ROS production by binding directly to the promoters of genes encoding ROS biosynthetic enzymes during drought-induced leaf senescence. The mRNA is cell-to-cell mobile.	NAC domain containing protein 53;(source:Araport11)
AT3G10630.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G10420.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G10560.1	protein_coding	Cytochrome P450 superfamily protein	member of CYP77A	Cytochrome P450 superfamily protein;(source:Araport11)
AT3G10490.1	protein_coding	NAC domain containing protein 52	Encodes a NAC transcription factor that physically associates with the histone H3K4 demethylase JMJ14 and through that association is involved in transcriptional repression and flowering time control.	NAC domain containing protein 52;(source:Araport11)
AT3G10620.1	protein_coding	nudix hydrolase homolog 26	Encodes a ppGpp pyrophosphohydrolase.	nudix hydrolase homolog 26;(source:Araport11)
AT3G10410.1	protein_coding	SERINE CARBOXYPEPTIDASE-LIKE 49		SERINE CARBOXYPEPTIDASE-LIKE 49;(source:Araport11)
AT3G10550.1	protein_coding	Myotubularin-like phosphatases II superfamily	Has 3'-phosphatase activity against both phosphatidylinositol-3,5-bisphosphate (PtdIns3,5P2) and Phosphatidylinositol-3-phosphate (PtdIns3P). The in vitro activity was higher with PtdIns3,5P2 than with PtdIns3P.	Myotubularin-like phosphatases II superfamily;(source:Araport11)
AT3G10480.1	protein_coding	NAC domain containing protein 50	Encodes a NAC transcription factor that physically associates with the histone H3K4 demethylase JMJ14 and through that association is involved in transcriptional repression and flowering time control. It binds the NAC-binding site, the Mitochondrial Dysfunction Motif.	NAC domain containing protein 50;(source:Araport11)
AT3G10400.1	protein_coding	RNA recognition motif and CCHC-type zinc finger domains containing protein	Encodes a U12-type spliceosomal protein U11/U12-31K.  Involved in U12 intron splicing via RNA chaperone activity and affects plant development.	RNA recognition motif and CCHC-type zinc finger domains containing protein;(source:Araport11)
AT3G10470.1	protein_coding	C2H2-type zinc finger family protein		C2H2-type zinc finger family protein;(source:Araport11)
AT3G10390.1	protein_coding	Flavin containing amine oxidoreductase family protein	Encodes a plant homolog of a SWIRM domain containing protein found in histone deacetylase complexes in mammals. Lesions in FLD result in hyperacetylation of histones in FLC chromatin, up-regulation of FLC expression and extremely delayed flowering. FLD plays a key role in regulating the reproductive competence of the shoot and results in different developmental phase transitions in Arabidopsis.	protein FLOWERING locus D-like protein;(source:Araport11)
AT3G10460.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G10670.1	protein_coding	non-intrinsic ABC protein 7	Plastidic SufC-like ATP-binding  cassette/ATPase essential for Arabidopsis  embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged  Fe–S clusters. Expressed in embryos and meristems.	non-intrinsic ABC protein 7;(source:Araport11)
AT3G10660.1	protein_coding	calmodulin-domain protein kinase cdpk isoform 2	predicted to encode calcium-dependent  protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal,  to A prevented the meristoylation .  The G to A mutation decreased AtCPK2 membrane association by approximately 50%.	calmodulin-domain protein kinase cdpk isoform 2;(source:Araport11)
AT3G45060.1	protein_coding	high affinity nitrate transporter 2.6	member of High affinity nitrate transporter family	high affinity nitrate transporter 2.6;(source:Araport11)
AT3G44980.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G44990.1	protein_coding	xyloglucan endo-transglycosylase-related 8	Encodes a xyloglucan endotransglycosylase/hydrolase. Protein sequence and phylogenetic analysis indicates that this enzyme resides in Group III-A of the XTH family, with high similarity to Tropaeolum majus (nasturtium) xyloglucanase 1 (TmNXG1).Enzyme kinetic analysis indicates predominant xyloglucan endo-hydrolase activity (EC 3.2.1.151) with only limited potential to act as a xyloglucan endo-transglycosylase (EC 2.4.1.207).	xyloglucan endo-transglycosylase-related 8;(source:Araport11)
AT3G45000.1	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT3G45010.1	protein_coding	serine carboxypeptidase-like 48		serine carboxypeptidase-like 48;(source:Araport11)
AT3G45020.1	protein_coding	Ribosomal L18p/L5e family protein		Ribosomal L18p/L5e family protein;(source:Araport11)
AT3G44940.1	protein_coding	Protein of unknown function (DUF1635)		enabled-like protein (DUF1635);(source:Araport11)
AT3G44950.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT3G45030.1	protein_coding	Ribosomal protein S10p/S20e family protein		Ribosomal protein S10p/S20e family protein;(source:Araport11)
AT3G44960.1	protein_coding			shugoshin;(source:Araport11)
AT3G45040.1	protein_coding	phosphatidate cytidylyltransferase family protein	Encodes a putative dolichol kinase that is localized to the endoplasmic reticulum and involved in pollen tube reception in the female gametophyte.	phosphatidate cytidylyltransferase family protein;(source:Araport11)
AT3G44970.1	protein_coding	Cytochrome P450 superfamily protein		Cytochrome P450 superfamily protein;(source:Araport11)
AT3G45050.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G44580.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G44500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1);(source:TAIR10)
AT3G44590.1	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT3G44510.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G44600.1	protein_coding	cyclophilin71	Cyclophilin71 is a WD40 domain cyclophilin, which functions in gene repression, organogenesis and meristem development. CYP71 physically interacts with histone H3.	cyclophilin71;(source:Araport11)
AT3G44530.1	protein_coding	homolog of histone chaperone HIRA	Encodes a nuclear localized WD-repeat containing protein involved in negative regulation of knox gene expression via epigenetic mechanism of chromatin re-organization. It is a part of the HISTONE REGULATOR complex that deposits histones in a DNA synthesis-independent manner and affects both nucleosome occupancy and the maintenance of transcriptional silencing. Interacts physically and genetically with AS1. Expressed in meristem and leaf primordia. Homozygous mutants are embryo lethal. Phenotype of cosuppressed lines is variable but show effects on leaf development similar to as1/as2.	histone chaperone HIRA-like protein;(source:Araport11)
AT3G44460.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052.  Located in the nucleus and expressed during seed maturation in the cotyledons.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT3G44550.1	protein_coding	fatty acid reductase 5	Encodes a member of the eight-member gene family encoding alcohol-forming fatty acyl-CoA reductases (FARs) identified in Arabidopsis thaliana.  Three of the FARs, FAR1 (At5g22500), FAR4 (At3g44540) and FAR5 (At3g44550), are shown to generate the fatty alcohols found in root, seed coat, and wound-induced leaf tissue. The mRNA is cell-to-cell mobile.	fatty acid reductase 5;(source:Araport11)
AT3G44540.1	protein_coding	fatty acid reductase 4	Encodes a member of the eight-member gene family encoding alcohol-forming fatty acyl-CoA reductases (FARs) identified in Arabidopsis thaliana.  Three of the FARs, FAR1 (At5g22500), FAR4 (At3g44540) and FAR5 (At3g44550), are shown to generate the fatty alcohols found in root, seed coat, and wound-induced leaf tissue. The mRNA is cell-to-cell mobile.	fatty acid reductase 4;(source:Araport11)
AT3G44470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT3G44560.1	protein_coding	fatty acid reductase 8		fatty acid reductase 8;(source:Araport11)
AT3G44480.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G44570.1	protein_coding	Arabidopsis retrotransposon ORF-1 protein		retrotransposon ORF-1 protein;(source:Araport11)
AT3G44490.1	protein_coding	histone deacetylase 17		histone deacetylase 17;(source:Araport11)
AT3G23820.1	protein_coding	UDP-D-glucuronate 4-epimerase 6	Encodes a UDP-D-glucuronate 4-epimerase involved in pectin biosynthesis in the cell wall and affects cell wall integrity and immunity to fungi and bacteria. The mRNA is cell-to-cell mobile.	UDP-D-glucuronate 4-epimerase 6;(source:Araport11)
AT3G23980.1	protein_coding	BLISTER	Encodes a protein that interacts with the Polycomb-group (Pc-G) histone methyltransferase CLF (CURLY LEAF).  It colocalizes with CLF to the nucleus and represses a subset of Pc-G target genes. The pleiotropic developmental mutant phenotype suggests that BLI prevents premature differentiation.	BLISTER;(source:Araport11)
AT3G23910.1	protein_coding			reverse transcriptase-like protein;(source:Araport11)
AT3G23990.1	protein_coding	heat shock protein 60	mitochondrial chaperonin HSP. assist in  rapid assembly of the oligomeric protein structures in the mitochondria.	heat shock protein 60;(source:Araport11)
AT3G23920.1	protein_coding	beta-amylase 1	Encodes a chloroplast beta-amylase. Is necessary for leaf starch breakdown in the absence of BAM3.Activity of BAM1 increases 4 days after osmotic stress. BAM1 has a higher temperature optimum than BAM3 (PMID:25293962).	beta-amylase 1;(source:Araport11)
AT3G24060.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G23830.1	protein_coding	glycine-rich RNA-binding protein 4	encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.	glycine-rich RNA-binding protein 4;(source:Araport11)
AT3G23930.1	protein_coding			troponin T, skeletal protein;(source:Araport11)
AT3G24070.1	protein_coding	Zinc knuckle (CCHC-type) family protein		Zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT3G24000.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G23940.1	protein_coding	dehydratase family	Encodes a member of the dihydroxyacid dehydrates family of proteins that encode enzymes involved in branched chain amino acid biosynthesis. Loss of function mutations have significantly reduced transmission and fertility due to defects in male and female gametophyte development and embryo lethality. Mutants have increased sensitivity to abiotic stressors which may be partially compensated by addition of amino acids to the growth medium.	dehydratase family;(source:Araport11)
AT3G23900.1	protein_coding	RNA recognition motif (RRM)-containing protein		RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT3G24080.1	protein_coding	KRR1 family protein		KRR1 family protein;(source:Araport11)
AT3G23950.1	protein_coding	F-box family protein	F-box protein family gene.	F-box family protein;(source:Araport11)
AT3G23840.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G24010.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein	ING1 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G24090.1	protein_coding	glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases	Encodes a glutamine-fructose-6-phosphate transaminase that likely plays a role in UDP-N-acetylglucosamine biosynthesis.	putative glucosamine-fructose-6-phosphate aminotransferase;(source:Araport11)
AT3G23960.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G24020.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT3G23970.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G24030.1	protein_coding	hydroxyethylthiazole kinase family protein		hydroxyethylthiazole kinase family protein;(source:Araport11)
AT3G23860.1	protein_coding	GTP-binding protein-related	Encodes a GTP-binding related protein that acts as a negative regulator of pollen germination, pollen tube growth, and gametophyte senescence.	GTP-binding protein-like protein;(source:Araport11)
AT3G24040.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT3G23870.1	protein_coding	Protein of unknown function (DUF803)		magnesium transporter NIPA (DUF803);(source:Araport11)
AT3G24050.1	protein_coding	GATA transcription factor 1	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 1;(source:Araport11)
AT3G23880.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G23890.1	protein_coding	topoisomerase II	Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.	topoisomerase II;(source:Araport11)
AT3G10220.1	protein_coding	tubulin folding cofactor B	Encodes a tubulin-binding cofactor. Homozygous mutant plants are embryo lethal. Heterozygous mutant plants showed increased ploidy and higher numbers of spindles and phragmoplasts, suggesting a role in cell division. The mRNA is cell-to-cell mobile.	tubulin folding cofactor B;(source:Araport11)
AT3G10300.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G10210.1	protein_coding	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein		SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein;(source:Araport11)
AT3G10290.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT3G10340.1	protein_coding	phenylalanine ammonia-lyase 4	Encodes PAL4, a putative a phenylalanine ammonia-lyase.  Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).	phenylalanine ammonia-lyase 4;(source:Araport11)
AT3G10380.1	protein_coding	subunit of exocyst complex 8	Subunit of the Putative Arabidopsis Exocyst  Complex	subunit of exocyst complex 8;(source:Araport11)
AT3G10280.1	protein_coding	3-ketoacyl-CoA synthase 14	Encodes KCS14, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 14;(source:Araport11)
AT3G10330.1	protein_coding	Cyclin-like family protein		Cyclin-like family protein;(source:Araport11)
AT3G10200.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G10270.1	protein_coding	DNA GYRASE B1	Protein targeting to mitochondria is influenced by UTR sequences.	DNA gyrase subunit B;(source:Araport11)
AT3G10320.1	protein_coding	Glycosyltransferase family 61 protein	MUCI21 is a GT61 protein required for the production of highly branched xylan in seed coat mucilage. MUCI21 likely decorates xylan with xylose side chains that seem to be necessary for pectin attachment to the seed surface.	Glycosyltransferase family 61 protein;(source:Araport11)
AT3G10190.1	protein_coding	Calcium-binding EF-hand family protein	Encodes a protein with sequence similarity to calmodulins. Loss of function mutations have decreased response to chitin elicitors suggesting a role in plant response to fungal pathogens.	Calcium-binding EF-hand family protein;(source:Araport11)
AT3G10260.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G10310.1	protein_coding	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain		P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT3G10180.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G10250.1	protein_coding	Plant protein 1589 of unknown function		histidine-tRNA ligase;(source:Araport11)
AT3G10240.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G10370.1	protein_coding	FAD-dependent oxidoreductase family protein	mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.	FAD-dependent oxidoreductase family protein;(source:Araport11)
AT3G10230.1	protein_coding	lycopene cyclase	Encodes a protein with lycopene &#946;-cyclase activity. This enzyme uses the linear, symmetrical lycopene as substrate. However, unlike the &#949;-cyclase which adds only one ring, the &#946;-cyclase introduces a ring at both ends of lycopene to form the bicyclic &#946;-carotene.	lycopene cyclase;(source:Araport11)
AT3G10360.1	protein_coding	pumilio 4	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 4;(source:Araport11)
AT3G10350.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	One of 3 GET paralogs in Arabidopsis. GET3b is a chloroplast localized protein with no obvious role in Tail Anchored (TA) protein insertion.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G58420.1	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT3G58510.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT3G58430.1	protein_coding	TRAF-like family protein		MATH domain/coiled-coil protein;(source:Araport11)
AT3G58520.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT3G58440.1	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT3G58610.1	protein_coding	ketol-acid reductoisomerase		ketol-acid reductoisomerase;(source:Araport11)
AT3G58530.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G58450.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	USP domain containing protein, member of the universal stress protein family, regulated by ABA and possibly regulated by the ABA-dependent transcription factor AREB/ABF. Involved in the regulation of seed germination.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G58620.1	protein_coding	tetratricopetide-repeat thioredoxin-like 4	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones. The TTL family is required for osmotic stress tolerance and male sporogenesis.	tetratricopetide-repeat thioredoxin-like 4;(source:Araport11)
AT3G58540.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G58460.1	protein_coding	RHOMBOID-like protein 15		RHOMBOID-like protein 15;(source:Araport11)
AT3G58630.1	protein_coding	sequence-specific DNA binding transcription factors		sequence-specific DNA binding transcription factor;(source:Araport11)
AT3G58550.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G58470.1	protein_coding	nucleic acid binding;methyltransferases		nucleic acid binding / methyltransferase;(source:Araport11)
AT3G58640.1	protein_coding	Mitogen activated protein kinase kinase kinase-related		Mitogen activated protein kinase kinase kinase-like protein;(source:Araport11)
AT3G58480.1	protein_coding	calmodulin-binding family protein		calmodulin-binding family protein;(source:Araport11)
AT3G58560.1	protein_coding	DNAse I-like superfamily protein	Encodes a protein that is involved in mRNA processing and localized to cytoplasmic p-bodies. Double mutants with CCR4b show decreased sensitivity to high concentrations of sucrose. Involved in starch and sucrose metabolism.	DNAse I-like superfamily protein;(source:Araport11)
AT3G58650.1	protein_coding		Encodes a member of the TRM superfamily, that plays a role in preprophase band formation during plant cell division and controls the robustness of the orientation of that cell division. Its transcription is regulated by the cell cycle and peaks at the G2/M transition.	GPI-anchored adhesin-like protein;(source:Araport11)
AT3G58570.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G58490.1	protein_coding	Phosphatidic acid phosphatase (PAP2) family protein	Encodes a long-chain base 1-phosphate (LCBP) phosphatase that is expressed in the endoplasmic reticulum.	Phosphatidic acid phosphatase (PAP2) family protein;(source:Araport11)
AT3G58580.1	protein_coding	DNAse I-like superfamily protein	Encodes a protein that is involved in mRNA processing and localized to cytoplasmic p-bodies. Double mutants with CCR4a show decreased sensitivity to high concentrations of sucrose. Involved in starch and sucrose metabolism.	DNAse I-like superfamily protein;(source:Araport11)
AT3G58500.1	protein_coding	protein phosphatase 2A-4	Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].	protein phosphatase 2A-4;(source:Araport11)
AT3G58590.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G58600.1	protein_coding	Adaptin ear-binding coat-associated protein 1 NECAP-1		Adaptin ear-binding coat-associated protein 1 NECAP-1;(source:Araport11)
AT3G02270.1	protein_coding	Trimeric LpxA-like enzyme		Trimeric LpxA-like enzyme;(source:Araport11)
AT3G02230.1	protein_coding	reversibly glycosylated polypeptide 1	RGP1 is a UDP-arabinose mutase that catalyzes the interconversion between the pyranose and furanose forms of UDP-L-arabinose. It appears to be required for proper cell wall formation. rgp1/rgp2 (at5g15650) double mutants have a male gametophyte lethal phenotype. RGP1 fusion proteins can be found in the cytosol and peripherally associated with the Golgi apparatus. The mRNA is cell-to-cell mobile.	reversibly glycosylated polypeptide 1;(source:Araport11)
AT3G02260.1	protein_coding	auxin transport protein (BIG)	Calossin-like protein required for polar auxin transport	auxin transport protein (BIG);(source:Araport11)
AT3G02220.1	protein_coding			small acidic-like protein;(source:Araport11)
AT3G02210.1	protein_coding	COBRA-like protein 1 precursor		COBRA-like protein 1 precursor;(source:Araport11)
AT3G02310.1	protein_coding	K-box region and MADS-box transcription factor family protein 	MADS-box protein, binds K domain of AG in vivo	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT3G02300.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G02290.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G02280.1	protein_coding	Flavodoxin family protein		Flavodoxin family protein;(source:Araport11)
AT3G02250.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT3G02240.1	protein_coding		Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor-like protein;(source:Araport11)
AT3G57710.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G57790.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G57700.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G57780.1	protein_coding			nucleolar-like protein;(source:Araport11)
AT3G57610.1	protein_coding	adenylosuccinate synthase	encoding adenylosuccinate synthetase (AdSS), the enzyme involved in the first step of the formation of the purine nucleotide AMP (conversion of IMP to adenylo-succinate)	adenylosuccinate synthase;(source:Araport11)
AT3G57690.1	protein_coding	arabinogalactan protein 23	Encodes a putative arabinogalactan-protein (AGP23).	arabinogalactan protein 23;(source:Araport11)
AT3G57770.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G57600.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G57680.1	protein_coding	Peptidase S41 family protein		Peptidase S41 family protein;(source:Araport11)
AT3G57760.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G57670.1	protein_coding	C2H2-type zinc finger family protein	Encodes a a C2H2/C2HC zinc finger transcription factor specifically expressed in the transmitting tract and involved in transmitting tract development and pollen tube growth.Acts redundantly with WIP4 and WIP5 to determine distal cell fate in the root. MP binds to regulatory elements within the NTT locus and likely regulates its expression.	C2H2-type zinc finger family protein;(source:Araport11)
AT3G57750.1	protein_coding	Protein kinase superfamily protein	Encodes a pseudokinase that likely acts as a decoy to lure the P. syringae effector acetyltransferase HopZ1a to the ZAR1-resistance complex, resulting in effector-triggered immunity (ETI) activation.  It is acetylated by HopZ1a.	Protein kinase superfamily protein;(source:Araport11)
AT3G57740.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G57660.1	protein_coding	nuclear RNA polymerase A1	Encodes a subunit of RNA polymerase I (aka RNA polymerase A). The mRNA is cell-to-cell mobile.	nuclear RNA polymerase A1;(source:Araport11)
AT3G57570.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G57730.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G57650.1	protein_coding	lysophosphatidyl acyltransferase 2	Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity.	lysophosphatidyl acyltransferase 2;(source:Araport11)
AT3G57720.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G57640.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G57630.1	protein_coding	exostosin family protein	Encodes a glycoprotein glycosyl transferase ExAD. Knockout mutants show truncated root hair phenotype.	exostosin family protein;(source:Araport11)
AT3G57620.1	protein_coding	glyoxal oxidase-related protein		glyoxal oxidase-related protein;(source:Araport11)
AT3G61620.1	protein_coding	3'-5'-exoribonuclease family protein	exonuclease RRP41 (RRP41)	3-5-exoribonuclease family protein;(source:Araport11)
AT3G61630.1	protein_coding	cytokinin response factor 6	CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors.  CRF proteins rapidly relocalize to the nucleus in response to cytokinin.  Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.	cytokinin response factor 6;(source:Araport11)
AT3G61640.1	protein_coding	arabinogalactan protein 20		arabinogalactan protein 20;(source:Araport11)
AT3G61650.1	protein_coding	gamma-tubulin	Required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant.	gamma-tubulin;(source:Araport11)
AT3G61660.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G61670.1	protein_coding	Protein of unknown function (DUF3133)		extra-large G-like protein, putative (DUF3133);(source:Araport11)
AT3G61680.1	protein_coding	alpha/beta-Hydrolases superfamily protein	PLIP1 encodes a plastid localized phospholipase A1 involved in seed oil biosynthesis.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G61690.1	protein_coding	nucleotidyltransferases	Putative TNAase	nucleotidyltransferase;(source:Araport11)
AT3G61700.1	protein_coding	Plant protein 1589 of unknown function		helicase with zinc finger protein;(source:Araport11)
AT3G02550.1	protein_coding	LOB domain-containing protein 41		LOB domain-containing protein 41;(source:Araport11)
AT3G02470.1	protein_coding	S-adenosylmethionine decarboxylase	Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.	S-adenosylmethionine decarboxylase;(source:Araport11)
AT3G02560.1	protein_coding	Ribosomal protein S7e family protein		Ribosomal protein S7e family protein;(source:Araport11)
AT3G02480.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT3G02640.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G02490.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G02650.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G02570.1	protein_coding	Mannose-6-phosphate isomerase, type I	Encodes a protein with phosphomannose isomerase activity.	Mannose-6-phosphate isomerase, type I;(source:Araport11)
AT3G02500.1	protein_coding			mental retardation GTPase activating protein;(source:Araport11)
AT3G02420.1	protein_coding			dihydroflavonol 4-reductase/flavanone protein;(source:Araport11)
AT3G02660.1	protein_coding	Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial		Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial;(source:Araport11)
AT3G02580.1	protein_coding	sterol 1	Brassinosteroid biosynthetic enzyme, catalyzes delta7 sterol C-5 desaturation step.  Mutant has dwarf phenotype.	sterol 1;(source:Araport11)
AT3G02510.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G02430.1	protein_coding	Protein of unknown function (DUF679)		transmembrane protein, putative (DUF679);(source:Araport11)
AT3G02590.1	protein_coding	Fatty acid hydroxylase superfamily protein		Fatty acid hydroxylase superfamily protein;(source:Araport11)
AT3G02520.1	protein_coding	general regulatory factor 7	Encodes GF14 &#957;, a 14-3-3 protein isoform (14-3-3&#957;).	general regulatory factor 7;(source:Araport11)
AT3G02440.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 20	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 20;(source:Araport11)
AT3G02670.1	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT3G02600.1	protein_coding	lipid phosphate phosphatase 3	Encodes phosphatidic acid phosphatase. Expressed during germination.	lipid phosphate phosphatase 3;(source:Araport11)
AT3G02530.1	protein_coding	TCP-1/cpn60 chaperonin family protein		TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT3G02450.1	protein_coding	cell division protein ftsH, putative	Proteolytically inactive member of the FtsH (filamentation-temperature-sensitive protein H) protease family due to mutations in the protease domain.	cell division protein ftsH;(source:Araport11)
AT3G02680.1	protein_coding	nijmegen breakage syndrome 1	DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and MRE11	nijmegen breakage syndrome 1;(source:Araport11)
AT3G02610.1	protein_coding	Plant stearoyl-acyl-carrier-protein desaturase family protein	Encodes one of two &#8710;9 palmitoyl-ACP desaturases responsible for the biosynthesis of &#969;-7 fatty acids in the maturing endosperm.	plant stearoyl-acyl-carrier desaturase family protein;(source:Araport11)
AT3G02540.1	protein_coding	Rad23 UV excision repair protein family	Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.	Rad23 UV excision repair protein family;(source:Araport11)
AT3G02460.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT3G02690.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	Nucleotide/sugar transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G02620.1	protein_coding	Plant stearoyl-acyl-carrier-protein desaturase family protein		Plant stearoyl-acyl-carrier-protein desaturase family protein;(source:Araport11)
AT3G02700.1	protein_coding	NC domain-containing protein-related		NC domain-containing protein-like protein;(source:Araport11)
AT3G02630.1	protein_coding	Plant stearoyl-acyl-carrier-protein desaturase family protein	One of seven acyl acyl carrier proteins. Expressed primarily in developing seeds.Involved in fatty acid metabolism.	Plant stearoyl-acyl-carrier-protein desaturase family protein;(source:Araport11)
AT3G02710.1	protein_coding	ARM repeat superfamily protein	Encodes a protein with a putative role in mRNA splicing.	ARM repeat superfamily protein;(source:Araport11)
AT3G02410.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G22500.1	protein_coding	Seed maturation protein	late embryogenesis abundant (LEA) protein	Seed maturation protein;(source:Araport11)
AT3G22600.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G22510.1	protein_coding	Pre-rRNA-processing protein TSR2, conserved region		Pre-rRNA-processing protein TSR2, conserved region;(source:Araport11)
AT3G22520.1	protein_coding			spindle assembly abnormal protein;(source:Araport11)
AT3G22540.1	protein_coding	Protein of unknown function (DUF1677)		hypothetical protein (DUF1677);(source:Araport11)
AT3G22550.1	protein_coding	Protein of unknown function (DUF581)		NAD(P)H-quinone oxidoreductase subunit, putative (DUF581);(source:Araport11)
AT3G22530.1	protein_coding			heat shock protein;(source:Araport11)
AT3G22460.1	protein_coding	O-acetylserine (thiol) lyase (OAS-TL) isoform A2	Encodes a member of a family of genes with O-acetylserine(thiol)lyase activity.	O-acetylserine (thiol) lyase (OAS-TL) isoform A2;(source:Araport11)
AT3G22560.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT3G22630.1	protein_coding	20S proteasome beta subunit D1	Encodes 20S proteasome beta subunit PBD1 (PBD1).	20S proteasome beta subunit D1;(source:Araport11)
AT3G22570.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G22470.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G22580.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G22480.1	protein_coding	prefoldin 2		prefoldin 2;(source:Araport11)
AT3G22590.1	protein_coding	PLANT HOMOLOGOUS TO PARAFIBROMIN	Encodes PLANT HOMOLOGOUS TO PARAFIBROMIN (PHP), a homolog of human Paf1 Complex (Paf1C) subunit Parafibromin. Human Parafibromin assists in mediating output from the Wnt signaling pathway, and dysfunction of the encoding gene HRPT2 conditions specific cancer-related disease phenotypes. PHP resides in a ~670-kDa protein complex in nuclear extracts, and physically interacts with other known Paf1C-related proteins in vivo. Loss of PHP specifically conditioned accelerated phase transition from vegetative growth to flowering and resulted in misregulation of a very limited subset of genes that included the flowering repressor FLOWERING LOCUS C (FLC). Member of PAF-C complex.	PLANT HOMOLOGOUS TO PARAFIBROMIN;(source:Araport11)
AT3G22490.1	protein_coding	Seed maturation protein	Atrab28 plays a role in the ion cell balance during late embryogenesis and germination.	Seed maturation protein;(source:Araport11)
AT3G45990.1	protein_coding	Cofilin/tropomyosin-type actin-binding protein family		Cofilin/tropomyosin-type actin-binding protein family;(source:Araport11)
AT3G45910.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G45830.1	protein_coding			nuclear factor kappa-B-binding-like protein;(source:Araport11)
AT3G46000.1	protein_coding	actin depolymerizing factor 2	Encodes depolymerizing factor 2.	actin depolymerizing factor 2;(source:Araport11)
AT3G45920.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G45840.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G46010.1	protein_coding	actin depolymerizing factor 1	Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo.	actin depolymerizing factor 1;(source:Araport11)
AT3G45930.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT3G45850.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G46020.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G45940.1	protein_coding	Glycosyl hydrolases family 31  protein		Glycosyl hydrolases family 31 protein;(source:Araport11)
AT3G45860.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 4	Encodes a cysteine-rich receptor-like protein kinase.  Involved in programmed cell death and defense response to pathogen.	cysteine-rich RLK (RECEPTOR-like protein kinase) 4;(source:Araport11)
AT3G46030.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT3G45950.1	protein_coding	Pre-mRNA splicing Prp18-interacting factor		Pre-mRNA splicing Prp18-interacting factor;(source:Araport11)
AT3G45870.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G45960.1	protein_coding	expansin-like A3	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin-like A3;(source:Araport11)
AT3G45880.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G45970.1	protein_coding	expansin-like A1	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) The mRNA is cell-to-cell mobile.	expansin-like A1;(source:Araport11)
AT3G45980.1	protein_coding	Histone superfamily protein	Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition.	Histone superfamily protein;(source:Araport11)
AT3G45800.1	protein_coding	Plant protein 1589 of unknown function		Plant protein 1589 of unknown function;(source:Araport11)
AT3G45810.1	protein_coding	ferric reductase-like transmembrane component family protein		ferric reductase-like transmembrane component family protein;(source:Araport11)
AT3G45890.1	protein_coding	Protein of unknown function, DUF647	Encodes RUS1 (root UVB sensitive 1), a protein that contains DUF647 (domain of unknown function 647), a domain highly conserved in eukaryotes.  The primary root of rus1 is hypersensitive to very low-fluence-rate (VLF) UVB.	root UVB sensitive-like protein (Protein of unknown function, DUF647);(source:Araport11)
AT3G45820.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G45900.1	protein_coding	Ribonuclease P protein subunit P38-related		Ribonuclease P protein subunit P38-like protein;(source:Araport11)
AT3G63250.1	protein_coding	homocysteine methyltransferase 2	Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.	homocysteine methyltransferase 2;(source:Araport11)
AT3G63260.1	protein_coding	Protein kinase superfamily protein	protein kinase, similar to mammal mixed-lineage kinase and Raf protein kinase	Protein kinase superfamily protein;(source:Araport11)
AT3G63190.1	protein_coding	ribosome recycling factor, chloroplast precursor	The gene encodes a chloroplast ribosome recycling factor homologue. Analysis of mutants revealed its role in the chloroplast development and eary stages of embryo development.	ribosome recycling factor, chloroplast precursor;(source:Araport11)
AT3G63270.1	protein_coding		A mutation in ANTAGONIST OF LHP1 1 (ALP1) suppresses the phenotype of lhp1 mutant plants. ALP1 interacts genetically with several  PcG and trxG components and antagonizes PcG silencing. The interaction has a negative effect on polycomb-mediated gene repression since double mutant combinations of clf alp1 or lhp1 alp1 show supression of the clf and lhp1 single mutant phenotypes. ALP1 domestication probably occured at the root of angiosperm diversification coincident with mutation of conserved residues important for endonuclease activity.	nuclease;(source:Araport11)
AT3G63200.1	protein_coding	PATATIN-like protein 9		PATATIN-like protein 9;(source:Araport11)
AT3G63210.1	protein_coding	Protein of unknown function (DUF581)	encodes a novel zinc-finger protein with a  proline-rich N-terminus, identical to senescence-associated protein SAG102	mediator of aba-regulated dormancy protein (DUF581);(source:Araport11)
AT3G63220.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G63230.1	protein_coding	Protein of unknown function (DUF581)		senescence-associated-like protein (DUF581);(source:Araport11)
AT3G63240.1	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT3G07930.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT3G07940.1	protein_coding	Calcium-dependent ARF-type GTPase activating protein family		Calcium-dependent ARF-type GTPase activating protein family;(source:Araport11)
AT3G07950.1	protein_coding	rhomboid protein-related		rhomboid protein-like protein;(source:Araport11)
AT3G07810.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G07960.1	protein_coding	Phosphatidylinositol-4-phosphate 5-kinase family protein	Encodes phosphatidylinositol-4-phosphate 5-kinase 6 (PIP5K6).  Regulates clathrin-dependent endocytosis in pollen tubes.	Phosphatidylinositol-4-phosphate 5-kinase family protein;(source:Araport11)
AT3G07820.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G07970.1	protein_coding	Pectin lyase-like superfamily protein	Required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.	Pectin lyase-like superfamily protein;(source:Araport11)
AT3G07830.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G07980.1	protein_coding	mitogen-activated protein kinase kinase kinase 6	MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required  for pollen development but not essential.	mitogen-activated protein kinase kinase kinase 6;(source:Araport11)
AT3G07990.1	protein_coding	serine carboxypeptidase-like 27		serine carboxypeptidase-like 27;(source:Araport11)
AT3G08000.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G08010.1	protein_coding	RNA binding	Encodes a chloroplast-localized protein ATAB2.  ATAB2 is involved in the biogenesis of Photosystem I and II.  ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II.	RNA binding protein;(source:Araport11)
AT3G07840.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G07850.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G07860.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT3G07870.1	protein_coding	F-box and associated interaction domains-containing protein	FBX92 is an F-box containing protein. Overexpression produces plants with smaller leaves while reduced expression is correlated with increased leaf size and increased rates of cell proliferation.	F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G08020.1	protein_coding	PHD finger family protein		PHD finger family protein;(source:Araport11)
AT3G07880.1	protein_coding	Immunoglobulin E-set superfamily protein	RhoGTPase GDP dissociation inhibitor (RhoGDI) that spatially restricts the sites of growth to a single point on the trichoblast. It regulates the NADPH oxidase RHD2/AtrbohC, which is required for hair growth.	Immunoglobulin E-set superfamily protein;(source:Araport11)
AT3G08030.1	protein_coding	Protein of unknown function, DUF642	The mRNA of this gene is expressed in viable seeds.  Its detection in a dry seed lot has potential for use as a molecular marker for germination performance as absence of expression correlates with decreased germination. Encodes DUF642 cell wall protein.	DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642);(source:Araport11)
AT3G07890.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT3G07900.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT3G07910.1	protein_coding			reactive oxygen species modulator-like protein;(source:Araport11)
AT3G07920.1	protein_coding	Translation initiation factor IF2/IF5		Translation initiation factor IF2/IF5;(source:Araport11)
AT3G07030.1	protein_coding	Alba DNA/RNA-binding protein		Alba DNA/RNA-binding protein;(source:Araport11)
AT3G06950.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT3G06870.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT3G06960.1	protein_coding	pigment defective 320	TGD4 is an integral dimeric beta-barrel lipid transfer protein that binds PtdOH with its N-terminus and contains dimerization domains at its C-terminus. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	pigment defective 320;(source:Araport11)
AT3G06930.1	protein_coding	protein arginine methyltransferase 4B	Encodes an type I protein arginine methyltransferase. PRMT4b can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.	protein arginine methyltransferase 4B;(source:Araport11)
AT3G07040.1	protein_coding	NB-ARC domain-containing disease resistance protein	Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.	NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT3G06970.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G06940.1	transposable_element_gene		Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1), AT2G30640 (MUG2), AT1G06740 (MUG3), AT5G16505 (MUG4), AT3G06940 (MUG5), AT5G48965 (MUG6), AT3G05850 (MUG7) and AT5G34853 (MUG8).	transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-42 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G07050.1	protein_coding	GTP-binding family protein	Arabidopsis NSN1 encodes a nucleolar GTP-   binding protein and is required for maintenance of inflorescence meristem identity and floral organ development.	GTP-binding family protein;(source:Araport11)
AT3G06980.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT3G07060.1	protein_coding	NHL domain-containing protein		NHL domain-containing protein;(source:Araport11)
AT3G06990.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G06880.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G07000.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G06890.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G07010.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G07020.1	protein_coding	UDP-Glycosyltransferase superfamily protein	encodes a 3beta-hydroxy sterol UDP-glucosyltransferase. ugt80a2 mutant plants have reduced steryl glycoside and acyl steryl glycoside levels and reduced seed size. ugt80a2/b1 double mutants have normal levels of celluose and normal cold stress tolerance.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G06910.1	protein_coding	UB-like protease 1A	Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. In vitro assays suggest that this enzyme is active against SUMO1 and SUMO2. It has weak activity with SUMO3 and cannot act on SUMO5. The N-terminal regulatory region of this protein is required for full activity.	UB-like protease 1A;(source:Araport11)
AT3G06920.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G58970.1	protein_coding	magnesium transporter 6	Transmembrane magnesium transporter. One of nine family members.	magnesium transporter 6;(source:Araport11)
AT3G59050.1	protein_coding	polyamine oxidase 3	Encodes a polyamine oxidase.	polyamine oxidase 3;(source:Araport11)
AT3G58980.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G59060.1	protein_coding	phytochrome interacting factor 3-like 6	Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.	phytochrome interacting factor 3-like 6;(source:Araport11)
AT3G58990.1	protein_coding	isopropylmalate isomerase 1		isopropylmalate isomerase 1;(source:Araport11)
AT3G59070.1	protein_coding	Cytochrome b561/ferric reductase transmembrane with DOMON related domain		Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein;(source:Araport11)
AT3G59000.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G59080.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G59090.1	protein_coding			tobamovirus multiplication protein;(source:Araport11)
AT3G59010.1	protein_coding	pectin methylesterase 61	Encodes PME35, a pectin methylesterase. PME35-mediated demethylesterification of the primary cell wall regulates the mechanical strength of the supporting tissue.	pectin methylesterase 61;(source:Araport11)
AT3G59020.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G59100.1	protein_coding	glucan synthase-like 11	encodes a protein similar to callose synthase	glucan synthase-like 11;(source:Araport11)
AT3G59030.1	protein_coding	MATE efflux family protein	Encodes a proton antiporter. Involved in the transportation of proanthocyanidin precursors into the vacuole. In vitro transport experiments showed that cyanidin-3-O-glucoside (anthocyanin) was an effective substrate, whereas the proanthocyanidin precursor epicatechin was not transported. However catechin-3-O-glucoside inhibited anthocyanin transport in a dose-dependent manner suggesting that glycosylated epicatechin is the in vivo substrate. Recessive mutation has strong reduction of proanthocyanidin deposition in vacuoles and has reduced dormancy. Expressed in the endothelium of ovules and developing seeds.	MATE efflux family protein;(source:Araport11)
AT3G59110.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G59040.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Involved in chloroplast biogenesis and function.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G59120.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G59130.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G59140.1	protein_coding	multidrug resistance-associated protein 14	member of MRP subfamily	multidrug resistance-associated protein 14;(source:Araport11)
AT3G08570.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G08760.1	protein_coding	Protein kinase superfamily protein	Encodes an osmotic stress-inducible kinase that functions as a negative regulator of osmotic stress signaling in plants.	Protein kinase superfamily protein;(source:Araport11)
AT3G08690.1	protein_coding	ubiquitin-conjugating enzyme 11		ubiquitin-conjugating enzyme 11;(source:Araport11)
AT3G08580.1	protein_coding	ADP/ATP carrier 1	mitochondrial ADP/ATP carrier	ADP/ATP carrier 1;(source:Araport11)
AT3G08770.1	protein_coding	lipid transfer protein 6	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	lipid transfer protein 6;(source:Araport11)
AT3G08700.1	protein_coding	ubiquitin-conjugating enzyme 12		ubiquitin-conjugating enzyme 12;(source:Araport11)
AT3G08590.1	protein_coding	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent	Encodes a 2,3-biphosphoglycerate-independent phosphoglycerate mutase that is involved in pollen development and stomatal movement.	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent;(source:Araport11)
AT3G08780.1	protein_coding			BRISC complex subunit Abro1-like protein;(source:Araport11)
AT3G08600.1	protein_coding	Protein of unknown function (DUF1191)		transmembrane protein, putative (DUF1191);(source:Araport11)
AT3G08790.1	protein_coding	ENTH/VHS/GAT family protein		ENTH/VHS/GAT family protein;(source:Araport11)
AT3G08610.1	protein_coding			NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit;(source:Araport11)
AT3G08620.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT3G08630.1	protein_coding	Protein of unknown function (DUF3411)		alphavirus core family protein (DUF3411);(source:Araport11)
AT3G08710.1	protein_coding	thioredoxin H-type 9	Associated to plasma membrane. Moves cell to cell, suggesting a role in intercellular communication.	thioredoxin H-type 9;(source:Araport11)
AT3G08640.1	protein_coding	Protein of unknown function (DUF3411)		alphavirus core family protein (DUF3411);(source:Araport11)
AT3G08720.1	protein_coding	serine/threonine protein kinase 2	Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl).  Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.	serine/threonine protein kinase 2;(source:Araport11)
AT3G08800.1	protein_coding	ARM repeat superfamily protein	Encodes a nuclear and endosome localized protein with ARM and HEAT domains that interacts with SHR and other non-cell-autonomous proteins and may be involved in their intercellular movement.  Hypomorphic mutant phenotypes suggest involvement of the protein in root patterning.	ARM repeat superfamily protein;(source:Araport11)
AT3G08650.1	protein_coding	ZIP metal ion transporter family		ZIP metal ion transporter family;(source:Araport11)
AT3G08550.1	protein_coding	elongation defective 1 protein / ELD1 protein	mutant is Dwarfed and shows defects in cell elongation; Cellulose deficient; Plasma Membrane Protein	elongation defective 1 protein / ELD1 protein;(source:Araport11)
AT3G08810.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G08660.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G08730.1	protein_coding	protein-serine kinase 1	Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress.  The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues.	protein-serine kinase 1;(source:Araport11)
AT3G08670.1	protein_coding			serine/arginine repetitive matrix-like protein;(source:Araport11)
AT3G08740.1	protein_coding	elongation factor P (EF-P) family protein		elongation factor P (EF-P) family protein;(source:Araport11)
AT3G08560.1	protein_coding	vacuolar H+-ATPase subunit E isoform 2		vacuolar H+-ATPase subunit E isoform 2;(source:Araport11)
AT3G08680.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G08750.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G50860.1	protein_coding	Clathrin adaptor complex small chain family protein		Clathrin adaptor complex small chain family protein;(source:Araport11)
AT3G50780.1	protein_coding			BTB/POZ domain protein;(source:Araport11)
AT3G50870.1	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a GATA transcriptional regulator required to position the proembryo boundary in the early embryo. Regulates shoot apical meristem and flower development.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT3G50790.1	protein_coding	esterase/lipase/thioesterase family protein		esterase/lipase/thioesterase family protein;(source:Araport11)
AT3G50960.1	protein_coding	phosducin-like protein 3 homolog	Encodes a protein that functions in microtubule assembly. PLP3a can bind to several different tubulin family members in Y2H assays. Plants with reduced levels of both PLP3a and PLP3b (At5g66410) show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.	thioredoxin domain PLP3A-like protein;(source:Araport11)
AT3G50880.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT3G50800.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G50890.1	protein_coding	homeobox protein 28		homeobox protein 28;(source:Araport11)
AT3G50810.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT3G50900.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G50820.1	protein_coding	photosystem II subunit O-2	Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In <i>Arabidopsis thaliana</i> the PsbO proteins are encoded by two genes: <i>psbO1</i> and <i>psbO2</i>. PsbO2 is the minor isoform in the wild-type. Mutants defective in this gene have been shown to be affected in the dephosphorylation of the D1 protein of PSII.	photosystem II subunit O-2;(source:Araport11)
AT3G50910.1	protein_coding			netrin receptor DCC;(source:Araport11)
AT3G50830.1	protein_coding	cold-regulated 413-plasma membrane 2	cold acclimation protein WCOR413-like protein beta form. Transcript is not detectable.	cold-regulated 413-plasma membrane 2;(source:Araport11)
AT3G50920.1	protein_coding	Phosphatidic acid phosphatase (PAP2) family protein	Encodes a phosphatidic acid phosphatase that can be detected in chloroplast membrane fractions. This gene (LPPepsilon1) and LPPepsilon2, appear to be less important for diacylglycerol formation in the plastids than LPPgamma.	Phosphatidic acid phosphatase (PAP2) family protein;(source:Araport11)
AT3G50840.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G50930.1	protein_coding	cytochrome BC1 synthesis	Encodes a protein that is present in a homo-multimeric protein complex on the outer mitochondrial membrane and plays a role in cell death and amplifying salicylic acid signalling. The mRNA is cell-to-cell mobile.	cytochrome BC1 synthesi;(source:Araport11)
AT3G50850.1	protein_coding	Putative methyltransferase family protein		Putative methyltransferase family protein;(source:Araport11)
AT3G50940.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G50950.1	protein_coding	HOPZ-ACTIVATED RESISTANCE 1	Encodes a canonical CC-type NLR protein that is required for the recognition of the T3SE HopZ1a from the pathogenic bacteria P. syringae.	HOPZ-ACTIVATED RESISTANCE 1;(source:Araport11)
AT3G50770.1	protein_coding	calmodulin-like 41		calmodulin-like 41;(source:Araport11)
AT3G05630.1	protein_coding	phospholipase D P2	Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins.  Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains.  Involved regulating root development in response to nutrient limitation.  Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other  Pi-requiring processes.  Does not appear to be involved in root hair patterning. Expression is upregulated in the shoot of cax1/cax3 mutant and is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.	phospholipase D P2;(source:Araport11)
AT3G05710.1	protein_coding	syntaxin of plants 43	Encodes a member of SYP4 Gene Family that is a plant ortholog of the Tlg2/syntaxin16 Qa-SNARE.  Together with SYP42, it regulates the secretory and vacuolar transport pathways in the post-Golgi network and maintains the morphology of the Golgi apparatus and TGN and is required for extracellular resistance responses to a fungal pathogen.	syntaxin of plants 43;(source:Araport11)
AT3G05620.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT3G05610.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT3G05700.1	protein_coding	Drought-responsive family protein	Encodes a DNA binding protein with transcription activation activity. It is expressed in response to osmotic, drought and ABA stress.	Drought-responsive family protein;(source:Araport11)
AT3G05600.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a cytosolic epoxide hydrolase capable of acting on 9,10-epoxystearic acid and on 12,13- epoxyoctadec-9-enoic acid that is involved in the synthesis of poly-hydroxylated cutin monomers.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G05690.1	protein_coding	nuclear factor Y, subunit A2	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	nuclear factor Y, subunit A2;(source:Araport11)
AT3G05590.1	protein_coding	ribosomal protein L18	Encodes cytoplasmic ribosomal protein L18.	ribosomal protein L18;(source:Araport11)
AT3G05680.1	protein_coding	embryo defective 2016	Encodes a splicing/methylation factor that is a homologue to the mammalian VIRILIZER, is member of a core set of mRNA m6A writer proteins and is required for N6-adenosine methylation of mRNA. Analysis of transcriptional profiles of the vir-1 mutant suggests that VIR is likely involved in regulation of gene expression, but the function of VIR is rather general than specific and knock-down of VIR does not affect overall splicing rates.	embryo defective 2016;(source:Araport11)
AT3G05670.1	protein_coding	RING/U-box protein		RING/U-box protein;(source:Araport11)
AT3G05660.1	protein_coding	receptor like protein 33		receptor like protein 33;(source:Araport11)
AT3G05650.1	protein_coding	receptor like protein 32		receptor like protein 32;(source:Araport11)
AT3G05640.1	protein_coding	Protein phosphatase 2C family protein	EGR1 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress.EGR1 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT3G05720.1	protein_coding	importin alpha isoform 7	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	importin alpha isoform 7;(source:Araport11)
AT3G46390.1	protein_coding			NAC domain protein;(source:Araport11)
AT3G46400.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G46330.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G46410.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G46340.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G46420.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G46350.1	protein_coding	Leucine-rich repeat protein kinase family protein		LRR receptor-like Serine/Threonine-kinase;(source:Araport11)
AT3G46430.1	protein_coding			ATP synthase;(source:Araport11)
AT3G46440.1	protein_coding	UDP-XYL synthase 5	encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.	UDP-XYL synthase 5;(source:Araport11)
AT3G46360.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G46370.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G46450.1	protein_coding	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein		SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein;(source:Araport11)
AT3G46380.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G46460.1	protein_coding	ubiquitin-conjugating enzyme 13		ubiquitin-conjugating enzyme 13;(source:Araport11)
AT3G46470.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G45250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.2e-08 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G45260.1	protein_coding	C2H2-like zinc finger protein	BIB is a member of the BIRD family of zinc finger proteins that includes JKD. BIB functions redundantly with JKD to retain SHR in the nucleus and thereby restrict SHR movement in root tissues.	C2H2-like zinc finger protein;(source:Araport11)
AT3G45340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.3e-47 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G45350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14330.1);(source:TAIR10)
AT3G45270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 5.7e-58 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G45280.1	protein_coding	syntaxin of plants 72	syntaxin of plants 72 (SYP72)	syntaxin of plants 72;(source:Araport11)
AT3G45360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04394.1);(source:TAIR10)
AT3G45290.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT3G45370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14340.1);(source:TAIR10)
AT3G45300.1	protein_coding	isovaleryl-CoA-dehydrogenase	Encodes isovaleryl-coenzyme a dehydrogenase.  Mutants have increases in 12 seed free amino acids, accumulation of seed homomethionine and 3-isovaleroyloxypropyl-glucosinolate, with a concomitant decrease in seed 3-benzoyloxypropyl-glucosinolate. The mRNA is cell-to-cell mobile.	isovaleryl-CoA-dehydrogenase;(source:Araport11)
AT3G45380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04400.1);(source:TAIR10)
AT3G45310.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G45390.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		LOW protein: L-type lectin-domain receptor kinase-like protein;(source:Araport11)
AT3G45320.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G45400.1	protein_coding	exostosin family protein		exostosin family protein;(source:Araport11)
AT3G45330.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G45410.1	protein_coding	Concanavalin A-like lectin protein kinase family protein	encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor.	Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G45420.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G56270.1	protein_coding	Plant protein of unknown function (DUF827)		WEB family protein (DUF827);(source:Araport11)
AT3G56190.1	protein_coding	alpha-soluble NSF attachment protein 2	Encodes one of two alpha-SNAPs (soluble NSF attachment protein) in Arabidopsis	alpha-soluble NSF attachment protein 2;(source:Araport11)
AT3G56110.1	protein_coding	prenylated RAB acceptor 1.B1		prenylated RAB acceptor 1.B1;(source:Araport11)
AT3G56280.1	pseudogene			pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT3G56200.1	protein_coding	Transmembrane amino acid transporter family protein	Encodes a putative amino acid transporter. The mRNA is cell-to-cell mobile.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT3G56120.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G56290.1	protein_coding			potassium transporter;(source:Araport11)
AT3G56210.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G56130.1	protein_coding	biotin/lipoyl attachment domain-containing protein		biotin/lipoyl attachment domain-containing protein;(source:Araport11)
AT3G56300.1	protein_coding	Cysteinyl-tRNA synthetase, class Ia family protein		Cysteinyl-tRNA synthetase, class Ia family protein;(source:Araport11)
AT3G56220.1	protein_coding	transcription regulators		transcription regulator;(source:Araport11)
AT3G56310.1	protein_coding	Melibiase family protein	Member of Glycoside Hydrolase Family 27 (GH27)that functions as an &#945;-galactosidase.	Melibiase family protein;(source:Araport11)
AT3G56230.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT3G56320.1	protein_coding	PAP/OAS1 substrate-binding domain superfamily		PAP/OAS1 substrate-binding domain superfamily;(source:Araport11)
AT3G56140.1	protein_coding	Protein of unknown function (DUF399 and DUF3411)		DUF399 family protein, putative (DUF399 and DUF3411);(source:Araport11)
AT3G56150.1	protein_coding	eukaryotic translation initiation factor 3C	member of eIF3c - eukaryotic initiation factor 3c	eukaryotic translation initiation factor 3C;(source:Araport11)
AT3G56240.1	protein_coding	copper chaperone	CCH protein belongs to a family of eukaryotic proteins that participate in  intracellular copper homeostasis by delivering this metal to the secretory pathway; mainly located along the vascular bundles of senescing leaves and petioles as well as in stem sieve elements; hypothesized  to have a role in copper mobilization from decaying organs towards reproductive structures, as a result of metalloprotein breakdown. The plant-specific C-terminal domain of the CCH protein forms amyloid-like fibrils in vitro.	copper chaperone;(source:Araport11)
AT3G56080.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G56160.1	protein_coding	Sodium Bile acid symporter family		Sodium Bile acid symporter family;(source:Araport11)
AT3G56250.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G56090.1	protein_coding	ferritin 3	Encodes FERRITIN 3, AtFER3.  Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life.  Function as the main iron store in mammals.  Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool.	ferritin 3;(source:Araport11)
AT3G56170.1	protein_coding	Ca-2+ dependent nuclease	Encodes a calcium-dependent nuclease with similarity to staphylococcal nuclease.	Ca-2+ dependent nuclease;(source:Araport11)
AT3G56260.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G56100.1	protein_coding	meristematic receptor-like  kinase	Protein kinase expressed in meristematic cells. Phosphorylates AGL24.	meristematic receptor-like kinase;(source:Araport11)
AT3G56180.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT3G42850.1	protein_coding	Mevalonate/galactokinase family protein		Mevalonate/galactokinase family protein;(source:Araport11)
AT3G42940.1	protein_coding			C3HC4-type RING finger protein;(source:Araport11)
AT3G42860.1	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT3G42950.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G42870.1	protein_coding			heat shock protein;(source:Araport11)
AT3G42960.1	protein_coding	TAPETUM 1	Arabidopsis homolog of TASSELSEED2. Expressed  specifically in tapetal cells.	TAPETUM 1;(source:Araport11)
AT3G42880.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G42890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.4e-10 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G42980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14450.1);(source:TAIR10)
AT3G42900.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.7e-44 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G42990.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G42910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28250.1);(source:TAIR10)
AT3G42920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04390.1);(source:TAIR10)
AT3G42930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-43 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G02110.1	protein_coding	serine carboxypeptidase-like 25		serine carboxypeptidase-like 25;(source:Araport11)
AT3G02040.1	protein_coding	senescence-related gene 3	Encodes a member of the glycerophosphodiester phosphodiesterase (GDPD) family. Has glycerophosphodiester phosphodiesterase activity. Functions in maintaining cellular phosphate homeostasis under phosphate starvation. The mRNA is cell-to-cell mobile.	senescence-related gene 3;(source:Araport11)
AT3G02100.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G02030.1	protein_coding	transferases, transferring acyl groups other than amino-acyl groups;acyltransferases		transferase;(source:Araport11)
AT3G02090.1	protein_coding	Insulinase (Peptidase family M16) protein		Insulinase (Peptidase family M16) protein;(source:Araport11)
AT3G02080.1	protein_coding	Ribosomal protein S19e family protein		Ribosomal protein S19e family protein;(source:Araport11)
AT3G02070.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G02060.1	protein_coding	DEAD/DEAH box helicase, putative		DEAD/DEAH box helicase;(source:Araport11)
AT3G02050.1	protein_coding	K+ uptake transporter 3	potassium transporter KUP3p (KUP3)	K+ uptake transporter 3;(source:Araport11)
AT3G02120.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G01870.1	protein_coding	Plant protein of unknown function (DUF946)		hypothetical protein (DUF946);(source:Araport11)
AT3G32400.1	protein_coding	Actin-binding FH2/DRF autoregulatory protein		Actin-binding FH2/DRF autoregulatory protein;(source:Araport11)
AT3G55600.1	protein_coding	Membrane fusion protein Use1		Membrane fusion protein Use1;(source:Araport11)
AT3G55690.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G55610.1	protein_coding	delta 1-pyrroline-5-carboxylate synthase 2	encodes delta 1-pyrroline-5-carboxylate synthetase B. Gene expression is induced by dehydration, high salt and ABA. Knock-out mutations in P5CS2 are embryo-lethal. P5CS2 appears to be present in different cells and/or different subcellular locations from P5CS1 in a tissue-dependent manner.   Mutants are defective in pollen development.	delta 1-pyrroline-5-carboxylate synthase 2;(source:Araport11)
AT3G55700.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G55620.1	protein_coding	Translation initiation factor IF6		Translation initiation factor IF6;(source:Araport11)
AT3G55790.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G55710.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G55630.1	protein_coding	DHFS-FPGS homolog D	Encodes one of the three folylpolyglutamate synthetase isoforms (FPGSs): FPGS1 (At5g05980, plastidic), FPGS2 (At3g10160, mitochondrial) and FPGS3 (At3g55630, cytosolic).	DHFS-FPGS homolog D;(source:Araport11)
AT3G55800.1	protein_coding	sedoheptulose-bisphosphatase	Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type. The mRNA is cell-to-cell mobile.	sedoheptulose-bisphosphatase;(source:Araport11)
AT3G55720.1	protein_coding	Protein of unknown function (DUF620)		replication factor C subunit, putative (DUF620);(source:Araport11)
AT3G55640.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT3G55810.1	protein_coding	Pyruvate kinase family protein		Pyruvate kinase family protein;(source:Araport11)
AT3G55730.1	protein_coding	myb domain protein 109	putative transcription factor MYB109 (MYB109) mRNA,	myb domain protein 109;(source:Araport11)
AT3G55650.1	protein_coding	Pyruvate kinase family protein		Pyruvate kinase family protein;(source:Araport11)
AT3G55820.1	protein_coding	Fasciclin-like arabinogalactan family protein		Fasciclin-like arabinogalactan family protein;(source:Araport11)
AT3G55660.1	protein_coding	ROP (rho of plants) guanine nucleotide exchange factor 6	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	ROP (rho of plants) guanine nucleotide exchange factor 6;(source:Araport11)
AT3G55740.1	protein_coding	proline transporter 2	Encodes a proline transporter with affinity for gly betaine, proline, and GABA.  Protein is expressed most highly in the roots.	proline transporter 2;(source:Araport11)
AT3G55670.1	protein_coding			F-box/FBD/LRR protein;(source:Araport11)
AT3G55750.1	protein_coding	Ribosomal protein L35Ae family protein		Ribosomal protein L35Ae family protein;(source:Araport11)
AT3G55680.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G55760.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G55770.1	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT3G55780.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT3G32040.1	protein_coding	Terpenoid synthases superfamily protein		Terpenoid synthases superfamily protein;(source:Araport11)
AT3G32050.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G32130.1	protein_coding			non-LTR retroelement reverse transcriptase;(source:Araport11)
AT3G32060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.0e-63 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G32110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.9e-52 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT3G32070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29700.1);(source:TAIR10)
AT3G32150.1	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT3G32080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29710.1);(source:TAIR10)
AT3G32160.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G32090.1	protein_coding	WRKY family transcription factor		WRKY family transcription factor;(source:Araport11)
AT3G32140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31410.1);(source:TAIR10)
AT3G47640.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes POPEYE (PYE), a bHLH transcription factor regulating response to iron deficiency in Arabidopsis roots.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G47460.1	protein_coding	Structural maintenance of chromosomes (SMC) family protein	member of SMC subfamily	Structural maintenance of chromosomes (SMC) family protein;(source:Araport11)
AT3G47550.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G47470.1	protein_coding	light-harvesting chlorophyll-protein complex I subunit A4	Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins.	light-harvesting chlorophyll-protein complex I subunit A4;(source:Araport11)
AT3G47480.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G47560.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G47650.1	protein_coding	DnaJ/Hsp40 cysteine-rich domain superfamily protein		DnaJ/Hsp40 cysteine-rich domain superfamily protein;(source:Araport11)
AT3G47490.1	protein_coding	HNH endonuclease		HNH endonuclease;(source:Araport11)
AT3G47570.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G47660.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G47500.1	protein_coding	cycling DOF factor 3	Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.	cycling DOF factor 3;(source:Araport11)
AT3G47580.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G47670.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G47510.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G47590.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G47520.1	protein_coding	malate dehydrogenase	Encodes a protein with NAD-dependent malate dehydrogenase activity, located in chloroplasts. The mRNA is cell-to-cell mobile.	malate dehydrogenase;(source:Araport11)
AT3G47600.1	protein_coding	myb domain protein 94	Encodes a putative transcription factor (MYB94).	myb domain protein 94;(source:Araport11)
AT3G47530.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G47610.1	protein_coding	transcription regulators;zinc ion binding		transcription regulator/ zinc ion binding protein;(source:Araport11)
AT3G47540.1	protein_coding	Chitinase family protein		Chitinase family protein;(source:Araport11)
AT3G47620.1	protein_coding	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	Encodes a transcription factor AtTCP14 that regulates seed germination.  AtTCP14 shows elevated expression level just prior to germination.  AtTCP14 is predominantly expressed in the vascular tissue of the embryo, and affects gene expression in radicles in a non-cell-autonomous manner.	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14;(source:Araport11)
AT3G47630.1	protein_coding			translocator assembly/maintenance protein;(source:Araport11)
AT3G26380.1	protein_coding	Melibiase family protein	APSE is a member of the Glycoside Hydrolase (GH27) family that functions as a &#946;-l-arabinopyranosidase.	Melibiase family protein;(source:Araport11)
AT3G26460.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT3G26390.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G26470.1	protein_coding	Powdery mildew resistance protein,  RPW8 domain		Powdery mildew resistance protein, RPW8 domain-containing protein;(source:Araport11)
AT3G26340.1	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein		N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT3G26400.1	protein_coding	eukaryotic translation initiation factor 4B1	member of eIF4B - eukaryotic initiation factor 4B The mRNA is cell-to-cell mobile.	eukaryotic translation initiation factor 4B1;(source:Araport11)
AT3G26300.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 34	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 34;(source:Araport11)
AT3G26350.1	protein_coding			proline-rich receptor-like kinase;(source:Araport11)
AT3G26410.1	protein_coding	methyltransferases;nucleic acid binding	Encodes a protein involved in modification of nucleosides in tRNA.  Mutants have only 7.3% 2-methylguanosine levels of wild type counterparts.	tRNA modification 11 protein;(source:Araport11)
AT3G26480.1	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G26360.1	protein_coding	Ribosomal protein S21 family protein		Ribosomal protein S21 family protein;(source:Araport11)
AT3G26420.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain	Zinc finger-containing glycine-rich  RNA-binding protein. Cold-inducible. Contributes to the enhancement of freezing tolerance. Members of this protein family include AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b) and AT5G04280 (AtRZ-1c).	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT3G26370.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT3G26430.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	Encodes a functioning member of the GDS(L) lipase family with preference for long chain substrates that does not hydrolyze choline esters.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G26440.1	protein_coding	Protein of unknown function (DUF707)		transmembrane protein, putative (DUF707);(source:Araport11)
AT3G26490.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G26450.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT3G26310.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 35	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 35;(source:Araport11)
AT3G26320.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 36	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 36;(source:Araport11)
AT3G26330.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 37	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 37;(source:Araport11)
AT3G03940.1	protein_coding	Protein kinase family protein	Casein kinase involved in phosphorylation and ubiquination of RYR/PYLs, resulting in negative regulation of ABA response. Also acts in GA response pathway along with RGA1/CCA1.	Protein kinase family protein;(source:Araport11)
AT3G03770.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G03850.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G03760.1	protein_coding	LOB domain-containing protein 20		LOB domain-containing protein 20;(source:Araport11)
AT3G03840.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G03750.1	protein_coding	SET domain protein 20		SET domain protein 20;(source:Araport11)
AT3G03830.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G03900.1	protein_coding	adenosine-5'-phosphosulfate (APS) kinase 3	Provides activated sulfate for the  sulfation of secondary metabolites, including the glucosinolates. Redundant with APK4.	adenosine-5-phosphosulfate (APS) kinase 3;(source:Araport11)
AT3G03740.1	protein_coding	BTB-POZ and MATH domain 4	Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 4;(source:Araport11)
AT3G03820.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G03890.1	protein_coding	FMN binding		FMN binding protein;(source:Araport11)
AT3G03730.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)	Member of a family of proteins containing an F-box domain at the N-terminal region and three kelch repeats at the C-terminal region. Involved in BR signaling. Co-suppressed KIB1,2,3,4 lines have a dwarf phenotype and resemble BR receptor mutants.	F-box/kelch-repeat protein, putative (DUF295);(source:Araport11)
AT3G03810.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT3G03880.1	protein_coding	Protein of unknown function (DUF1639)		sterol O-acyltransferase, putative (DUF1639);(source:Araport11)
AT3G03720.1	protein_coding	cationic amino acid transporter 4	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.	cationic amino acid transporter 4;(source:Araport11)
AT3G03790.1	protein_coding	ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein		ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G03870.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G03780.1	protein_coding	methionine synthase 2	Encodes a cytosolic methionine synthase, involved in methionine regeneration via the activated methyl cycle (or SAM cycle)	methionine synthase 2;(source:Araport11)
AT3G03860.1	protein_coding	APR-like 5	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. The mRNA is cell-to-cell mobile.	APR-like 5;(source:Araport11)
AT3G03800.1	protein_coding	syntaxin of plants 131	member of SYP13 Gene Family	syntaxin of plants 131;(source:Araport11)
AT3G30720.1	protein_coding	qua-quine starch	QQS is an orphan gene that arose recently in the Arabidopsis thaliana lineage. It was first identified in a screen for genes with altered expression pattern in SS3 mutants which make an abundance of starch. Overexpression of QQS in Arabidopsis increases protein content and decreases total starch content. Thus it appears to function to modulate carbon/nitrogen allocation in Arabidopsis. Over expression of QQS in soybean, rice and maize also results in an increase in protein and decrease in starch levels suggesting that QQS affects similar pathways in a wide range of plants. QQS interacts with NF-YC4 in Arabidopsis and NF-YC4 homologs in rice, soybean and maize. In Arabidopsis QQS is localized the the cytoplasm and when complexed with NF-YC4 , it localizes to the nucleus.	qua-quine starch;(source:Araport11)
AT3G30710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G08113.1);(source:TAIR10)
AT3G61930.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G61850.1	protein_coding	Dof-type zinc finger DNA-binding family protein	Zinc finger transcription factor of the Dof family involved in the control of seed germination.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT3G61940.1	protein_coding	Cation efflux family protein	Member of Zinc transporter (ZAT) family. Expressed in roots under low zinc conditions.	Cation efflux family protein;(source:Araport11)
AT3G61860.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G61950.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	MYC-type transcription factor which interacts with ICE1 and negatively regulates cold-responsive genes and cold tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G61870.1	protein_coding			plant/protein;(source:Araport11)
AT3G62040.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G61960.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G61880.1	protein_coding	cytochrome p450 78a9	Encodes a cytochrome p450 monooxygenase.  Overexpression of this gene allows fruit growth independently of fertilization.  The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis.	cytochrome p450 78a9;(source:Araport11)
AT3G61970.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G61890.1	protein_coding	homeobox 12	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems.	homeobox 12;(source:Araport11)
AT3G61980.1	protein_coding	serine protease inhibitor, Kazal-type family protein	Encodes a Kazal-type serine proteinase inhibitor that is highly expressed in seedlings and flowers.	serine protease inhibitor, Kazal-type family protein;(source:Araport11)
AT3G61900.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G61990.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a protein methyltransferase. Involved in the methylation of plant transmembrane proteins.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G61910.1	protein_coding	NAC domain protein 66	NAC transcription factor NST2. NST1 and NST2 are redundant in regulating secondary wall thickening  in anther walls. NST2 promoter was particularly strong in anther tissue.	NAC domain protein 66;(source:Araport11)
AT3G62000.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G61920.1	protein_coding			UvrABC system protein C;(source:Araport11)
AT3G62010.1	protein_coding			metal ion-binding protein;(source:Araport11)
AT3G62020.1	protein_coding	germin-like protein 10	germin-like protein (GLP10)	germin-like protein 10;(source:Araport11)
AT3G07470.1	protein_coding	Protein of unknown function, DUF538		transmembrane protein, putative (Protein of unknown function, DUF538);(source:Araport11)
AT3G07390.1	protein_coding	auxin-responsive family protein	isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular. The mRNA is cell-to-cell mobile.	auxin-induced in root cultures-like protein;(source:Araport11)
AT3G07480.1	protein_coding	2Fe-2S ferredoxin-like superfamily protein		2Fe-2S ferredoxin-like superfamily protein;(source:Araport11)
AT3G07400.1	protein_coding	lipase class 3 family protein		lipase class 3 family protein;(source:Araport11)
AT3G07560.1	protein_coding	peroxin 13	Encodes peroxin 13 (PEX13) involved in protein transport into peroxisomes, for example, peroxisomal import of nitric oxide synthase.	peroxin 13;(source:Araport11)
AT3G07410.1	protein_coding	RAB GTPase homolog A5B		RAB GTPase homolog A5B;(source:Araport11)
AT3G07490.1	protein_coding	ARF-GAP domain 11	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	ARF-GAP domain 11;(source:Araport11)
AT3G07420.1	protein_coding	asparaginyl-tRNA synthetase 2	Encodes an asparaginyl-tRNA synthetase.	asparaginyl-tRNA synthetase 2;(source:Araport11)
AT3G07500.1	protein_coding	Far-red impaired responsive (FAR1) family protein	Encodes one of four FRS (FAR1-RELATED SEQUENCE) factor-like genes in Arabidopsis.  FRS factors are characterized by having an N-terminal C2H2-type chelating motif of the WRKY- Glial Cell Missing1 family, a central core transposase domain of Mutator-like element transposases, and a C-terminal SWIM domain. The four FRF-like genes in  Arabidopsis share only the N-terminal motif with FRS proteins.	Far-red impaired responsive (FAR1) family protein;(source:Araport11)
AT3G07430.1	protein_coding	YGGT family protein	YLMG is located in thylakoid membranes. It is involved in chloroplast division and more specifically the proper distribution of nucleoids. The  function is conserved between cyanobacteria and chloroplasts.The mRNA is cell-to-cell mobile.	YGGT family protein;(source:Araport11)
AT3G07330.1	protein_coding	Cellulose-synthase-like C6	encodes a gene similar to cellulose synthase	Cellulose-synthase-like C6;(source:Araport11)
AT3G07510.1	protein_coding			maternal effect embryo arrest protein;(source:Araport11)
AT3G07440.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G07340.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G07520.1	protein_coding	glutamate receptor 1.4	member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.	glutamate receptor 1.4;(source:Araport11)
AT3G07450.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G07350.1	protein_coding	Protein of unknown function (DUF506) 		sulfate/thiosulfate import ATP-binding protein, putative (DUF506);(source:Araport11)
AT3G07530.1	protein_coding			integrator complex subunit;(source:Araport11)
AT3G07460.1	protein_coding	Protein of unknown function, DUF538		transmembrane protein, putative (Protein of unknown function, DUF538);(source:Araport11)
AT3G07360.1	protein_coding	plant U-box 9	Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.	plant U-box 9;(source:Araport11)
AT3G07540.1	protein_coding	Actin-binding FH2 (formin homology 2) family protein		Actin-binding FH2 (formin homology 2) family protein;(source:Araport11)
AT3G07370.1	protein_coding	carboxyl terminus of HSC70-interacting protein	Encodes AtCHIP, a new class of E3 ubiquitin ligases with three tetratricopeptide repeats and a U-box domain, structurally similar to the animal CHIP proteins. Plays an important role in plant cellular metabolism under temperature stress conditions. Functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	carboxyl terminus of HSC70-interacting protein;(source:Araport11)
AT3G07550.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G07380.1	protein_coding	Domain of unknown function (DUF23)		glycosyltransferase family protein (DUF23);(source:Araport11)
AT3G05530.1	protein_coding	regulatory particle triple-A ATPase 5A	Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle.  Essential for gametophyte development.  In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b.  RPT5a and RPT5b show accession-dependent functional redundancy.  In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. The mRNA is cell-to-cell mobile.	regulatory particle triple-A ATPase 5A;(source:Araport11)
AT3G05380.1	protein_coding	DIRP ;Myb-like DNA-binding domain		ALWAYS EARLY 2;(source:Araport11)
AT3G05450.1	protein_coding			cystatin-like protein;(source:Araport11)
AT3G05520.1	protein_coding	Subunits of heterodimeric actin filament capping protein Capz superfamily	Encodes a capping protein that acts as a phosphatidic acid biosensor and key transducer of fluxes in membrane signaling phospholipids into changes in actin cytoskeleton dynamics.	Subunits of heterodimeric actin filament capping protein Capz superfamily;(source:Araport11)
AT3G05440.1	protein_coding	C2 domain-containing protein		C2 domain-containing protein;(source:Araport11)
AT3G05430.1	protein_coding	Tudor/PWWP/MBT superfamily protein		Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT3G05510.1	protein_coding	Phospholipid/glycerol acyltransferase family protein		Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT3G05420.1	protein_coding	acyl-CoA binding protein 4	Acyl-CoA binding protein with high affinity for   oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.	acyl-CoA binding protein 4;(source:Araport11)
AT3G05500.1	protein_coding	Rubber elongation factor protein (REF)	Encodes a protein that associates with lipid droplet surfaces and shares sequence homology with family of small rubber particle proteins. The mRNA is cell-to-cell mobile.	Rubber elongation factor protein (REF);(source:Araport11)
AT3G05490.1	protein_coding	ralf-like 22	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 22;(source:Araport11)
AT3G05410.1	protein_coding	Photosystem II reaction center PsbP family protein		Photosystem II reaction center PsbP family protein;(source:Araport11)
AT3G05480.1	protein_coding	cell cycle checkpoint control protein family	Involved in the regulation of DNA damage repair and homologous recombination.	cell cycle checkpoint control protein family;(source:Araport11)
AT3G05400.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G05470.1	protein_coding	Actin-binding FH2 (formin homology 2) family protein		Actin-binding FH2 (formin homology 2) family protein;(source:Araport11)
AT3G05390.1	protein_coding			S-adenosyl-L-methionine-dependent methyltransferase;(source:Araport11)
AT3G05460.1	protein_coding	sporozoite surface protein-related		sporozoite surface protein-like protein;(source:Araport11)
AT3G43600.1	protein_coding	aldehyde oxidase 2	Encodes an aldehyde oxidase. AAO2 does not appear to act on abscisic aldehyde in vitro but it is possible that it may function in abscisic acid biosynthesis when the activity of At2g27150 (AAO3), the primary abscisic aldehyde oxidase, is lost.	aldehyde oxidase 2;(source:Araport11)
AT3G43610.1	protein_coding	Spc97 / Spc98 family of spindle pole body (SBP) component		Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT3G43620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);retrotransposon family, predicted proteins - Arabidopsis thaliana;(source:TAIR10)
AT3G43570.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G43580.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT3G43590.1	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT3G52470.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT3G52390.1	protein_coding	TatD related DNase		TatD related DNase;(source:Araport11)
AT3G52480.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G52400.1	protein_coding	syntaxin of plants 122	syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway	syntaxin of plants 122;(source:Araport11)
AT3G52490.1	protein_coding	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein	Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance.	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G52410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36010.1);(source:TAIR10)
AT3G52500.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G52420.1	protein_coding	outer envelope membrane protein 7	encodes a 7 kDa chloroplast outer envelope membrane protein.	outer envelope membrane protein 7;(source:Araport11)
AT3G52510.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G52430.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level  in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling. Required for the ssi2-dependent heightened  resistance to GPA. The mRNA is cell-to-cell mobile.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G52520.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G52440.1	protein_coding	Dof-type zinc finger DNA-binding family protein		Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT3G52450.1	protein_coding	plant U-box 22	Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.	plant U-box 22;(source:Araport11)
AT3G52460.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G43670.1	protein_coding	Copper amine oxidase family protein		Copper amine oxidase family protein;(source:Araport11)
AT3G43680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1);(source:TAIR10)
AT3G43690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G43700.1	protein_coding	BTB-POZ and MATH domain 6	Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 6;(source:Araport11)
AT3G43710.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G43640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.4e-25 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G43650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.0e-43 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G43660.1	protein_coding	Vacuolar iron transporter (VIT) family protein	The gene encodes a putative nodulin-like21 protein.	Vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT3G54050.1	protein_coding	high cyclic electron flow 1	Encodes a chloroplastic fructose 1,6-bisphosphate phosphatase. also known as HCEF1 (High Cyclic Electron Flow 1). hcef1 mutants have constitutively elevated electron flow (CEFI) and plants with antisense suppression of this enzyme have higher levels of net leaf photosynthesis  and increased sucrose biosynthesis. The mRNA is cell-to-cell mobile.	high cyclic electron flow 1;(source:Araport11)
AT3G54060.1	protein_coding			myosin-M heavy protein;(source:Araport11)
AT3G54140.1	protein_coding	peptide transporter 1	Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. GFP-tagged PTR1 localizes to the plasma membrane and has 8 to 11 predicted transmembrane domains. PTR1 is expressed in a number of different vascular tissues throughout the plant based on promoter:GUS expression analysis. ptr1 mutants have a lower dry weight than wild type plants when both are grown with Pro-Ala or Ala-Ala dipeptides as their nitrogen source, suggesting that PTR1 plays a role in dipeptide uptake in the roots. Furthermore N content of ptr1 mutants is lower than that of wild type plants when grown with Pro-Ala or a mixture of dipeptides as nitrogen source	peptide transporter 1;(source:Araport11)
AT3G54070.1	protein_coding	Ankyrin repeat family protein		LOW protein: ankyrin repeat protein;(source:Araport11)
AT3G54150.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a DNA methyltransferase required for pollen exine formation and male fertility via the regulation of callose wall and primexine formation.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G54240.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G54080.1	protein_coding	Concanavalin A-like lectin family protein		Concanavalin A-like lectin family protein;(source:Araport11)
AT3G54160.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G54250.1	protein_coding	GHMP kinase family protein	Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis.	GHMP kinase family protein;(source:Araport11)
AT3G54090.1	protein_coding	fructokinase-like 1	Encodes a fructokinase-like protein (AT3G54090/FLN1, AT1G69200/FLN2), a member of the pfkB-carbohydrate kinase family.  FLN1 and FLN2 are potential plastidial thioredoxin z (TRX z) targets.  Mutants display mutant chloroplast development, general plant growth and development defects and defects in PEP-dependent transcription.	fructokinase-like 1;(source:Araport11)
AT3G54170.1	protein_coding	FKBP12 interacting protein 37	Encodes protein that binds FKBP12.  This interaction is disrupted by FK506 but not by cyclosporin A.FIP37 is a core component of the M6A methyltransferase complex. Homozygous loss of function mutations are embryo lethal. In the shoot meristem FIP37 methylation targets include WUS and STM.	FKBP12 interacting protein 37;(source:Araport11)
AT3G54260.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 36	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 36;(source:Araport11)
AT3G54100.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT3G54180.1	protein_coding	cyclin-dependent kinase B1;1	Arabidopsis homolog of yeast cdc2, a protein  kinase (cyclin-dependent kinase) that plays a central role in control of the mitotic cell cycle.	cyclin-dependent kinase B1;(source:Araport11)
AT3G54270.1	protein_coding	sucrose-6F-phosphate phosphohydrolase family protein		sucrose-6F-phosphate phosphohydrolase family protein;(source:Araport11)
AT3G54110.1	protein_coding	plant uncoupling mitochondrial protein 1	Member of Uncoupling protein PUMP2 family. Encodes a mitochondrial uncoupling protein AtUCP1 involved in maintain the redox poise of the mitochondrial electron transport chain to facilitate photosynthetic metabolism.  Disruption of UCP1 results in a photosynthetic phenotype. Specifically there is a restriction in photorespiration with a decrease in the rate of oxidation of photorespiratory glycine in the mitochondrion. This change leads to an associated reduced photosynthetic carbon assimilation rate. The mRNA is cell-to-cell mobile.	plant uncoupling mitochondrial protein 1;(source:Araport11)
AT3G54190.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G54280.1	protein_coding	DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases		ROOT GROWTH DEFECTIVE 3;(source:Araport11)
AT3G54120.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G54200.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT3G54290.1	protein_coding			hemerythrin HHE cation-binding domain protein;(source:Araport11)
AT3G54130.1	protein_coding	Josephin family protein		Josephin family protein;(source:Araport11)
AT3G54210.1	protein_coding	Ribosomal protein L17 family protein		Ribosomal protein L17 family protein;(source:Araport11)
AT3G54300.1	protein_coding	vesicle-associated membrane protein 727	Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal.	vesicle-associated membrane protein 727;(source:Araport11)
AT3G54220.1	protein_coding	GRAS family transcription factor	Encodes a member of a novel family having similarity to DNA binding proteins containing basic-leucine zipper regions; scr is expressed in cortex/endodermal initial cells and in the endodermal cell lineage.  Regulates the radial organization of the root. Is required cell-autonomously for distal specification of the quiescent center, which in turn regulates stem cell fate of immediately surrounding cells. SCR appears to be a direct target of SHR. SCR and SCR-LIKE 23 act redundantly in bundle sheath cell fate specification.	GRAS family transcription factor;(source:Araport11)
AT3G54310.1	protein_coding			DNA-directed RNA polymerase subunit alpha;(source:Araport11)
AT3G54230.1	protein_coding	suppressor of abi3-5	Encodes a splicing factor SUA (suppressor of abi3-5), homologous to the human protein RBM5.  Controls alternative splicing of the developmental regulator ABI3.	suppressor of abi3-5;(source:Araport11)
AT3G06040.1	protein_coding	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein		Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein;(source:Araport11)
AT3G06050.1	protein_coding	peroxiredoxin IIF	Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions.	peroxiredoxin IIF;(source:Araport11)
AT3G06060.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes one of the Arabidopsis proteins (At3g06060/TSC10A and At5g19200/TSC10B) with significant similarity to the yeast 3-ketodihydrosphinganine (3-KDS) reductase, Tsc10p.  Both TSC10A and TSC10B are bona fide 3-KDS reductase as shown by complementation experiment in yeast.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G06070.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G06030.1	protein_coding	NPK1-related protein kinase 3	NPK1-related protein kinase 3	NPK1-related protein kinase 3;(source:Araport11)
AT3G59750.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G59840.1	protein_coding			allyl alcohol dehydrogenase-like protein;(source:Araport11)
AT3G59760.1	protein_coding	O-acetylserine (thiol) lyase isoform C	Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC. Required for pollen tube growth and/or fertilization.	O-acetylserine (thiol) lyase isoform C;(source:Araport11)
AT3G59850.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G59770.1	protein_coding	sacI homology domain-containing protein / WW domain-containing protein	Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.	sacI homology domain-containing protein / WW domain-containing protein;(source:Araport11)
AT3G59940.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	Encodes a member of a family of F-box proteins, called the KISS ME DEADLY (KMD) family, that targets type-B ARR proteins for degradation and is involved in the negative regulation of the cytokinin response. Also named as KFB50, a member of a group of Kelch repeat F-box proteins that negatively regulate phenylpropanoid biosynthesis by targeting the phenypropanoid biosynthesis enzyme phenylalanine ammonia-lyase. The mRNA is cell-to-cell mobile.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G59860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.4e-21 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G59780.1	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein		Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT3G59950.1	protein_coding	Peptidase family C54 protein		Peptidase family C54 protein;(source:Araport11)
AT3G59870.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G59790.1	protein_coding	MAP kinase 10	Encodes a member of the MAP Kinase family. Thought to be a pseuedogene, MAPK10 is expressed very transiently during germination and in the leaf tips/hydathodes. Loss of function mutations are late flowering in long days and exhibit abnormal patterning of cotyledon veins. MPK10 interacts with and may be regulated by MPKK2 another map kinase.	MAP kinase 10;(source:Araport11)
AT3G59960.1	protein_coding	histone-lysine N-methyltransferase ASHH4		histone-lysine N-methyltransferase ASHH4;(source:Araport11)
AT3G59880.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G59800.1	protein_coding			stress response protein;(source:Araport11)
AT3G59970.1	protein_coding	methylenetetrahydrofolate reductase 1	methylenetetrahydrofolate reductase MTHFR1 mRNA, complete	methylenetetrahydrofolate reductase 1;(source:Araport11)
AT3G59890.1	protein_coding	Dihydrodipicolinate reductase, bacterial/plant		Dihydrodipicolinate reductase, bacterial/plant;(source:Araport11)
AT3G59810.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT3G59980.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT3G59900.1	protein_coding	auxin-regulated gene involved in organ size	Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size).  Inducible by auxin.  Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth.	auxin-regulated gene involved in organ size;(source:Araport11)
AT3G59820.1	protein_coding	LETM1-like protein		LETM1-like protein;(source:Araport11)
AT3G59990.1	protein_coding	methionine aminopeptidase 2B	Encodes a MAP2 like methionine aminopeptidase	methionine aminopeptidase 2B;(source:Araport11)
AT3G59910.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT3G59830.1	protein_coding	Integrin-linked protein kinase family		Integrin-linked protein kinase family;(source:Araport11)
AT3G60000.1	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT3G59920.1	protein_coding	RAB GDP dissociation inhibitor 2	RAB GDP DISSOCIATION INHIBITOR 2 The mRNA is cell-to-cell mobile.	RAB GDP dissociation inhibitor 2;(source:Araport11)
AT3G59930.1	protein_coding		Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT3G57020.1	protein_coding	Calcium-dependent phosphotriesterase superfamily protein		Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT3G57030.1	protein_coding	Calcium-dependent phosphotriesterase superfamily protein		Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT3G57120.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G57040.1	protein_coding	response regulator 9	response regulator ARR9, A two-component response regulator-like protein with a receiver domain with a conserved aspartate residue and a possible phosphorylation site and at the N-terminal half. Appears to interact with histidine kinase like genes ATHP3 and ATHP2	response regulator 9;(source:Araport11)
AT3G57130.1	protein_coding	Ankyrin repeat family protein / BTB/POZ domain-containing protein	Encodes BOP1.  Contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain. Lines carrying recessive mutations exhibit a number of visible defects, most pronounced being ectopic outgrowths of in leaf petioles of rosette leaves. Along with BOP2, BOP1 is required for nectary development and  formation of normal abscission zones.Forms homodimers and heterodimers with BOP2. Nuclear localization is required for activity which includes positive regulation of AS2 in leaves. BOP1/2 promotes floral meristem fate and determinacy in a pathway targetting APETALA1 and AGAMOUS-LIKE24. PUCHI, BOP1 and BOP2 are redundantly required for expression of LFY and AP1. BOP1 is expressed in valve margin. Misexpression in stems causes short internodes and ectopic biosynthesis of lignin. BOP1 activity is antagonistic to BP (At4g08150) and PNY (At5g02030). BOP1 expression is restricted to pedicel axils by BP and PNY. BOP1 promotes KNAT6 (At1g23380) expression.BOP1 Interacts with BIL1/BZR1 and Inhibits BIL1/BZR1 transport into the nucleus.	Ankyrin repeat family protein / BTB/POZ domain-containing protein;(source:Araport11)
AT3G57050.1	protein_coding	cystathionine beta-lyase	Encodes cystathionine beta-lyase, the second enzyme in the methionine biosynthetic pathway. Mutants show defects in root development, reduced methylation and maintenance of the quiescent center.	cystathionine beta-lyase;(source:Araport11)
AT3G57140.1	protein_coding	sugar-dependent 1-like		sugar-dependent 1-like protein;(source:Araport11)
AT3G57060.1	protein_coding	binding		binding protein;(source:Araport11)
AT3G57150.1	protein_coding	homologue of NAP57	Encodes a putative pseudouridine synthase (NAP57).	homologue of NAP57;(source:Araport11)
AT3G56990.1	protein_coding	embryo sac development arrest 7		embryo sac development arrest 7;(source:Araport11)
AT3G57070.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT3G57000.1	protein_coding	nucleolar essential protein-related		nucleolar essential protein-like protein;(source:Araport11)
AT3G57080.1	protein_coding	Eukaryotic rpb5 RNA polymerase subunit family protein	Non-catalytic subunit unique to Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB5.	Eukaryotic rpb5 RNA polymerase subunit family protein;(source:Araport11)
AT3G57170.1	protein_coding	N-acetylglucosaminyl transferase component family protein / Gpi1 family protein		N-acetylglucosaminyl transferase component family protein / Gpi1 family protein;(source:Araport11)
AT3G57010.1	protein_coding	Calcium-dependent phosphotriesterase superfamily protein		Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT3G57090.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G57100.1	protein_coding	Protein of unknown function (DUF677)		transmembrane protein, putative (DUF677);(source:Araport11)
AT3G57110.1	protein_coding			exonuclease V;(source:Araport11)
AT3G11430.1	protein_coding	glycerol-3-phosphate acyltransferase 5	sn-glycerol-3-phosphate 2-O-acyltransferas, involved in the biosynthesis of suberin polyester.	glycerol-3-phosphate acyltransferase 5;(source:Araport11)
AT3G11510.1	protein_coding	Ribosomal protein S11 family protein		Ribosomal protein S11 family protein;(source:Araport11)
AT3G11440.1	protein_coding	myb domain protein 65	Member of the R2R3-MYB gene family. Similar to GA-induced Barley myb gene. May be induced during germination in response to GA. Double mutants with MYB33 are male sterile, showing defects in pollen development and anther development. Contains a binding site for miRNA159 and may be spatially regulated by this micro RNA. A highly conserved RNA secondary structure abuts the miR159 binding site which facilitates its regulation by miR159. The male sterile phenotype of  the MYB33/MYB65 double mutant is light and temperature sensitive. Fertility can be restored with increased light intensity and lower temperatures.	myb domain protein 65;(source:Araport11)
AT3G11450.1	protein_coding	DnaJ domain ;Myb-like DNA-binding domain	Encodes a ZRF1 chromatin regulator. Functions in regulating plant growth and development.	DnaJ and Myb-like DNA-binding domain-containing protein;(source:Araport11)
AT3G11520.1	protein_coding	CYCLIN B1;3	Encodes a B-type mitotic cyclin.	CYCLIN B1;(source:Araport11)
AT3G11540.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling.  Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. SPY may be involved in reducing ROS accumulation in response to stress.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G11460.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes a DYW PPR protein that is involved in editing the mitochondrial NAD2 transcript at the site nad2-842.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G11530.1	protein_coding	Vacuolar protein sorting 55 (VPS55) family protein		Vacuolar protein sorting 55 (VPS55) family protein;(source:Araport11)
AT3G11470.1	protein_coding	4'-phosphopantetheinyl transferase superfamily	Encodes one of three splice variants. Differs in having YQ in positions 88 and 89. The protein is localized to the mitochondria where it phosphopantetheinylates the mature apo mtACP isoforms. It is an essential gene as homozygous mutants cannot be recovered (embryo lethal).P isoforms. It is an essential gene as homozygous mutants cannot be recovered (embryo lethal).	4-phosphopantetheinyl transferase superfamily;(source:Araport11)
AT3G11550.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT3G11480.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	The gene encodes a SABATH methyltransferase that methylates both salicylic acid and benzoic acid.  It is highly expressed in flowers, induced by biotic and abiotic stress and thought to be involved in direct defense mechanism.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G11560.1	protein_coding	LETM1-like protein		LETM1-like protein;(source:Araport11)
AT3G11390.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G11490.1	protein_coding	rac GTPase activating protein	ROP (Rho of plant GTPases) family member Involved in cell wall patterning. Encodes ROP inactivator, regulates the formation of ROP-activated domains; these in turn determined the pattern of cell wall pits. Positively regulates pit formation, but negatively regulates pit size, required for periodic formation of secondary cell wall pits.	rac GTPase activating protein;(source:Araport11)
AT3G11570.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 8	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 8;(source:Araport11)
AT3G11400.1	protein_coding	eukaryotic translation initiation factor 3G1	One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3). The mRNA is cell-to-cell mobile.	eukaryotic translation initiation factor 3G1;(source:Araport11)
AT3G11500.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT3G11580.1	protein_coding	AP2/B3-like transcriptional factor family protein	SOD7 encodes nuclear localized B3 DNA binding domain and a transcriptional repression motif. Belongs to the RAV gene family. Functions in regulation of seed size and binds to and represses KLU. Transcription repressor involved in regulation of inflorescence architecture.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G11410.1	protein_coding	protein phosphatase 2CA	Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.	protein phosphatase 2CA;(source:Araport11)
AT3G11590.1	protein_coding			golgin family A protein;(source:Araport11)
AT3G11420.1	protein_coding	Protein of unknown function (DUF604)		beta-1,3-N-acetylglucosaminyltransferase lunatic protein, putative (DUF604);(source:Araport11)
AT3G51060.1	protein_coding	Lateral root primordium (LRP) protein-related	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves. Binds to the promoter of YUC4 and YUC8 (binding site  ACTCTAC)	Lateral root primordium (LRP) protein-like protein;(source:Araport11)
AT3G51070.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G51080.1	protein_coding	GATA transcription factor 6	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 6;(source:Araport11)
AT3G51260.1	protein_coding	20S proteasome  alpha subunit PAD1	20S proteosomal alpha subunits.  Interacts with SnRK, SKP1/ASK1 during proteasomal binding of an SCF ubiquitin ligase.	20S proteasome alpha subunit PAD1;(source:Araport11)
AT3G51090.1	protein_coding	Protein of unknown function (DUF1640)		coiled-coil 90B-like protein (DUF1640);(source:Araport11)
AT3G51100.1	protein_coding			altered inheritance of mitochondria protein;(source:Araport11)
AT3G51270.1	protein_coding	protein serine/threonine kinases;ATP binding;catalytics		protein serine/threonine kinase;(source:Araport11)
AT3G51110.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G51280.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G51120.1	protein_coding	DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding		zinc finger CCCH domain-containing protein 44;(source:Araport11)
AT3G51290.1	protein_coding	Protein of unknown function (DUF630) ;Protein of unknown function (DUF632)		pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632);(source:Araport11)
AT3G51130.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G51300.1	protein_coding	RHO-related protein from plants 1	Encodes a pollen-specific Rop GTPase, member of the Rho family of small GTP binding proteins that interacts with RIC3 and RIC4 to control tip growth in pollen tubes. These three proteins promote the proper targeting of exocytic vesicles in the pollen tube tip. ROP1 activity is regulated by the REN1 GTPase activator protein.	RHO-related protein from plants 1;(source:Araport11)
AT3G51140.1	protein_coding	Protein of unknown function (DUF3353)		DnaJ (DUF3353);(source:Araport11)
AT3G51310.1	protein_coding	VPS35 homolog C	Homolog of yeast retromer subunit VPS35.  Part of a retromer-like protein complex involved in endosome to lysosome protein transport.	VPS35 homolog C;(source:Araport11)
AT3G51150.1	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT3G51320.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G51330.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G50970.1	protein_coding	dehydrin family protein	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments.  LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid. The mRNA is cell-to-cell mobile.	dehydrin family protein;(source:Araport11)
AT3G50980.1	protein_coding	dehydrin xero 1		dehydrin xero 1;(source:Araport11)
AT3G50990.1	protein_coding	Peroxidase superfamily protein	Encodes a class III peroxidase family protein that functions as a mucilage extrusion factor. Its polarized and developmental stage-dependent secretion plays a role in cell wall modification of the cells in the second layer of the outer integument.	Peroxidase superfamily protein;(source:Araport11)
AT3G51160.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Catalyzes the first step in the de novo synthesis of GDP-L-fucose.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G51000.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G51010.1	protein_coding			protein translocase subunit;(source:Araport11)
AT3G51020.1	protein_coding			metal ion-binding protein;(source:Araport11)
AT3G51180.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT3G51030.1	protein_coding	thioredoxin H-type 1	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.	thioredoxin H-type 1;(source:Araport11)
AT3G51190.1	protein_coding	Ribosomal protein L2 family		Ribosomal protein L2 family;(source:Araport11)
AT3G51040.1	protein_coding	RTE1-homolog	Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids.	RTE1-homolog;(source:Araport11)
AT3G51200.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G51050.1	protein_coding	FG-GAP repeat-containing protein	NERD1 is a single copy locus encoding a protein of unknown function that is localized to the nucleus. Single mutants show defects in root hair growth, root meristem function, cell elongation. NERD1  appears to act synergistically with the exocyst in root development.	FG-GAP repeat-containing protein;(source:Araport11)
AT3G51210.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G51220.1	protein_coding	Plant protein of unknown function (DUF827)		WEB family protein (DUF827);(source:Araport11)
AT3G51230.1	protein_coding			chalcone-flavanone isomerase family protein;(source:Araport11)
AT3G51240.1	protein_coding	flavanone 3-hydroxylase	Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. Not responsive to auxin or ethylene stimulus (qRT-PCR).	flavanone 3-hydroxylase;(source:Araport11)
AT3G51250.1	protein_coding	Senescence/dehydration-associated protein-related		Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT3G06350.1	protein_coding	dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative	Encodes a bi-functional dehydroquinate-shikimate dehydrogenase enzyme that catalyzes two steps in the chorismate biosynthesis pathway.	dehydroquinate dehydratase, putative / shikimate dehydrogenase;(source:Araport11)
AT3G06430.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes PPR2, a pentatricopeptide repeat protein. Binds to plastid 23S rRNA and plays an important role in the first mitotic division during gametogenesis and in cell proliferation during embryogenesis.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G06420.1	protein_coding	Ubiquitin-like superfamily protein	Autophagy protein.	Ubiquitin-like superfamily protein;(source:Araport11)
AT3G06450.1	protein_coding	HCO3- transporter family		HCO3- transporter family;(source:Araport11)
AT3G06480.1	protein_coding	DEAD box RNA helicase family protein		DEAD box RNA helicase family protein;(source:Araport11)
AT3G06410.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT3G06440.1	protein_coding	Galactosyltransferase family protein	Encodes a Golgi-localized hydroxyproline-O-galactosyltransferase.  Mutants display multiple phenotypes including reduced root hair growth and reduced seed coat mucilage.	Galactosyltransferase family protein;(source:Araport11)
AT3G06400.1	protein_coding	chromatin-remodeling protein 11	Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. Double mutation in CHR17 and CHR11 results in the loss of the evenly spaced nucleosome pattern in gene bodies, but does not affect nucleosome density.	chromatin-remodeling protein 11;(source:Araport11)
AT3G06390.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT3G06380.1	protein_coding	tubby-like protein 9	Member of plant TLP family which differs in having an F box domain. Interacts with ASK proteins.Plasma membrane tethering is mediated by PIP2 binding domain.  Mutants are insensitive to ABA. May act redundantly with its paralog TPL3.	tubby-like protein 9;(source:Araport11)
AT3G06370.1	protein_coding	sodium hydrogen exchanger 4	member of Sodium proton exchanger family	sodium hydrogen exchanger 4;(source:Araport11)
AT3G06470.1	protein_coding	GNS1/SUR4 membrane protein family	ELO family protein containing a characteristic histidine motif which binds to AtCb5-B, interacts with AtBI-1. Together with AtCb5-B interacts with KCR1, PAS2, and CER10, which are essential for the synthesis of VLCFAs.	GNS1/SUR4 membrane protein family;(source:Araport11)
AT3G06360.1	protein_coding	arabinogalactan protein 27	Encodes an arabinogalactan-protein (AGP27).	arabinogalactan protein 27;(source:Araport11)
AT3G06460.1	protein_coding	GNS1/SUR4 membrane protein family	ELO family protein containing a characteristic histidine motif which binds to AtCb5-B, interacts with AtBI-1	GNS1/SUR4 membrane protein family;(source:Araport11)
AT3G59450.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G59280.1	protein_coding	Protein Transporter, Pam16	Encodes the ortholog of yeast PAM16, part of the mitochondrial inner membrane protein import motor. Single mutant plants exhibit a smaller size and enhanced resistance against virulent pathogens. They also display elevated reactive oxygen species (ROS) accumulation.	Protein Transporter, Pam16;(source:Araport11)
AT3G59200.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G59370.1	protein_coding	Vacuolar calcium-binding protein-related		Vacuolar calcium-binding protein-like protein;(source:Araport11)
AT3G59290.1	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT3G59210.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G59380.1	protein_coding	farnesyltransferase A	Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1.	farnesyltransferase A;(source:Araport11)
AT3G59300.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G59220.1	protein_coding	pirin	encodes a cupin-domain containing protein that is similar to pirins which interact with a CCAAT box binding transcription factor. The protein interacts with GPA1 (G protein alpha-subunit) in vitro. Mutants in the gene are affected in germination and early seedling development.	pirin;(source:Araport11)
AT3G59390.1	protein_coding			glycosyltransferase family protein;(source:Araport11)
AT3G59310.1	protein_coding	Eukaryotic protein of unknown function (DUF914)		solute carrier family 35 protein (DUF914);(source:Araport11)
AT3G59230.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G59400.1	protein_coding	enzyme binding;tetrapyrrole binding	GUN, genomes uncoupled, is necessary for coupling the expression of some  nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and  promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein  that enhances the activity of Mg-chelatase. Although required  for chlorophyll accumulation under normal  growth conditions, GUN4 is not essential  for chlorophyll synthesis.	protein GENOMES UNCOUPLED 4;(source:Araport11)
AT3G59320.1	protein_coding	Eukaryotic protein of unknown function (DUF914)		solute carrier family 35 protein (DUF914);(source:Araport11)
AT3G59410.1	protein_coding	protein kinase family protein	Encodes an eIF2alpha kinase that can bind uncharged tRNA via its C-terminus and can phosphorylate both eIF2alpha homologues in Arabidopsis.	protein kinase family protein;(source:Araport11)
AT3G59330.1	protein_coding	Eukaryotic protein of unknown function (DUF914)		solute carrier family 35 protein (DUF914);(source:Araport11)
AT3G59420.1	protein_coding	crinkly4	Encodes a membrane localized protein with similarity to receptor kinases which is involved in epidermal cell differentiation. Flowers of mutants have disorganized ovule integument growth and abnormal sepal margins. In the roots, mutants initiate more lateral roots but fewer laterals actually emerge due to defects in lateral root formation. Mutants also display disorganized columella. The root phenotypes can be traced to abnormalities in asymmetric divisions in the pericycle and root apex.  Conflicting data regarding the role of the kinase domain- which may or may not be required for function. Complementation studies indicate that the C-terminal domain is also not required for signaling function. May be regulated by protein turnover which is mediated by endocytic processes. ACR4 phosphorylates the PROTEIN PHOSPHATASE 2A-3 (PP2A-3) catalytic subunit of the PP2A phosphatase holoenzyme and PP2A	crinkly4;(source:Araport11)
AT3G59430.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G59240.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G59160.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G59250.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G59170.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G59340.1	protein_coding	Eukaryotic protein of unknown function (DUF914)		solute carrier family 35 protein (DUF914);(source:Araport11)
AT3G59260.1	protein_coding	pirin, putative		pirin;(source:Araport11)
AT3G59180.1	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT3G59350.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G59270.1	protein_coding	FBD-like domain family protein		FBD-like domain family protein;(source:Araport11)
AT3G59440.1	protein_coding	Calcium-binding EF-hand family protein	Encodes an endomembrane localized member of the CML subfamily VII. Contains a canonical CaM domain and unique N-terminal extension that distinguishes it from other members of the subfamily.	Calcium-binding EF-hand family protein;(source:Araport11)
AT3G59360.1	protein_coding	UDP-galactose transporter 6		UDP-galactose transporter 6;(source:Araport11)
AT3G59190.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G42270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.1e-62 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.9e-166 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT3G42230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 1.0e-42 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT3G42240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43940.1);(source:TAIR10)
AT3G42250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48720.1);(source:TAIR10)
AT3G42260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.3e-60 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G44180.1	protein_coding	syntaxin-related family protein		syntaxin-related family protein;(source:Araport11)
AT3G44100.1	protein_coding	MD-2-related lipid recognition domain-containing protein		MD-2-related lipid recognition domain-containing protein;(source:Araport11)
AT3G44190.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT3G44110.1	protein_coding	DNAJ homologue 3	homologous to the co-chaperon DNAJ protein from E coli	DNAJ homologue 3;(source:Araport11)
AT3G44200.1	protein_coding	NIMA (never in mitosis, gene A)-related 6	Encodes AtNek5, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.Interacts physically with plant kinesins ARK1 and ARK2. Mutants show defects in root epidermal cell morphology, trichome branching and other epidermal cell abnormalities suggesting a rol e in epidermal cell differentiation. NEK6 co-localizes with cortical microtubules.	serine/threonine-protein kinase NEK5;(source:Araport11)
AT3G44120.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G44210.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G44130.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G44140.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G44060.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G44150.1	protein_coding			Expp1 protein;(source:Araport11)
AT3G44070.1	protein_coding	Glycosyl hydrolase family 35 protein		Glycosyl hydrolase family 35 protein;(source:Araport11)
AT3G44160.1	protein_coding	Outer membrane OMP85 family protein	Encodes a chloroplast-localized Omp85 family member. Members of this family chaperone the membrane insertion of beta-barrel-shaped outer membrane proteins in bacteria, mitochondria and probably chloroplasts and facilitate the transfer of nuclear-encoded cytosolically synthesized preproteins across the outer envelope of chloroplasts.	Outer membrane OMP85 family protein;(source:Araport11)
AT3G44080.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G44170.1	protein_coding			plant self-incompatibility protein S1 family protein;(source:Araport11)
AT3G44090.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G11890.1	protein_coding	Sterile alpha motif (SAM) domain-containing protein		Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G11810.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G11900.1	protein_coding	aromatic and neutral transporter 1	encodes an amino acid transporter that transports aromatic and neutral amino acids, IAA, and 2,4-D. Expressed in all tissues with highest abundance in flowers and cauline leaves. a member of a small gene family in Arabidopsis and represents a new class of amino acid transporters.	aromatic and neutral transporter 1;(source:Araport11)
AT3G11820.1	protein_coding	syntaxin of plants 121	Encodes a syntaxin localized at the plasma membrane. SYR1/PEN1 is a member of the SNARE superfamily and functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling.  Also functions in non-host resistance against barley powdery mildew. It is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. The syp121 point mutation results in stomatal phenotypes that reduce CO2 assimilation, slow vegetative growth and increase water use efficiency in the whole plant, conditional upon high light intensities and low relative humidity. The R20R21 motif of SYP121 are essential for SEC11 interaction. Mutation of the R20R21 motif blocks vesicle traffic without uncoupling the effects of SYP121 on solute and K+ uptake associated with the F9xRF motif; the mutation also mimicks the effects on traffic block observed on coexpression of the dominant negative SEC11?149 fragment.	syntaxin of plants 121;(source:Araport11)
AT3G11740.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT3G11730.1	protein_coding	Ras-related small GTP-binding family protein	Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. It has also been identified as an isoprenylated protein.	Ras-related small GTP-binding family protein;(source:Araport11)
AT3G11830.1	protein_coding	TCP-1/cpn60 chaperonin family protein		TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT3G11750.1	protein_coding	Dihydroneopterin aldolase	Encodes an enzyme that can act as a aldolase or an epimerase for 7,8-dihydroneopterin and 7,8-dihydromonapterin in vitro. It is likely to act in tetrahydrofolate biosynthesis in vivo.	Dihydroneopterin aldolase;(source:Araport11)
AT3G11910.1	protein_coding	ubiquitin-specific protease 13		ubiquitin-specific protease 13;(source:Araport11)
AT3G11840.1	protein_coding	plant U-box 24	Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity.	E3 ubiquitin-protein ligase PUB24-like protein;(source:Araport11)
AT3G11760.1	protein_coding			structural maintenance of chromosomes flexible hinge domain protein;(source:Araport11)
AT3G11850.1	protein_coding	Protein of unknown function, DUF593		myosin-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT3G11770.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	RICE1 is a 23kDa protein with 3?- 5? exoribonuclease activity. It is expressed ubiquitously and localized to the cytoplasm. When RICE1 and its paralog RICE2 are knocked down, miRNA levels are decreased. RICE1 interacts with AGO1 and AGO10. It may affect miRNA accumulation by clearing RISC by degrading 5? products of AGO cleavage.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G11860.1	protein_coding			sterile alpha motif (SAM) domain protein;(source:Araport11)
AT3G11780.1	protein_coding	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein		MD-2-related lipid recognition domain-containing protein / ML domain-containing protein;(source:Araport11)
AT3G11870.1	protein_coding	Endoribonuclease/protein kinase IRE1-like		Endoribonuclease/protein kinase IRE1-like protein;(source:Araport11)
AT3G11880.1	protein_coding	Protein of unknown function DUF2359, transmembrane		transmembrane protein, putative (Protein of unknown function DUF2359, transmembrane);(source:Araport11)
AT3G11800.1	protein_coding			Expp1 protein;(source:Araport11)
AT3G62790.1	protein_coding	NADH-ubiquinone oxidoreductase-related		NADH-ubiquinone oxidoreductase-like protein;(source:Araport11)
AT3G62710.1	protein_coding	Glycosyl hydrolase family protein		Glycosyl hydrolase family protein;(source:Araport11)
AT3G62630.1	protein_coding	Protein of unknown function (DUF1645)		stress response NST1-like protein (DUF1645);(source:Araport11)
AT3G62880.1	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT3G62800.1	protein_coding	double-stranded-RNA-binding protein 4	Encodes a nuclear dsRNA-binding protein DRB4 that interacts specifically with DCL4.  May regulate DCL4 function and thereby affect miRNA biogenesis. Also has an impact on polymerase IV-dependent siRNA levels. DRB4 interacts with the P6 viral protein from Cauliflower mosaic virus and may be a target of viral silencing suppression.	double-stranded-RNA-binding protein 4;(source:Araport11)
AT3G62720.1	protein_coding	xylosyltransferase 1	Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.	xylosyltransferase 1;(source:Araport11)
AT3G62640.1	protein_coding	Protein of unknown function (DUF3511)		DUF3511 domain protein (DUF3511);(source:Araport11)
AT3G62890.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G62810.1	protein_coding	complex 1 family protein / LVR family protein		complex 1 family protein / LVR family protein;(source:Araport11)
AT3G62730.1	protein_coding			desiccation-like protein;(source:Araport11)
AT3G62650.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G62900.1	protein_coding	CW-type Zinc Finger		CW-type Zinc Finger;(source:Araport11)
AT3G62820.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G62740.1	protein_coding	beta glucosidase 7		beta glucosidase 7;(source:Araport11)
AT3G62660.1	protein_coding	galacturonosyltransferase-like 7	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase-like 7;(source:Araport11)
AT3G62830.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate  several cell wall biosynthetic enzymes.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G62750.1	protein_coding	beta glucosidase 8	Encodes a putative beta glucosidase, expressed in the peroxisome.	beta glucosidase 8;(source:Araport11)
AT3G62840.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT3G62670.1	protein_coding	response regulator 20	member of Response Regulator: B- Type	two-component response regulator;(source:Araport11)
AT3G62760.1	protein_coding	Glutathione S-transferase family protein	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	Glutathione S-transferase family protein;(source:Araport11)
AT3G62850.1	protein_coding	zinc finger protein-related		zinc finger protein-like protein;(source:Araport11)
AT3G62770.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Required for autophagosome formation during nutrient deprivation and senescence, promotes pexophagy during seedling development.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G62860.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G62870.1	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT3G62590.1	protein_coding	alpha/beta-Hydrolases superfamily protein	PLIP3  is a glycerolipid A1 lipase with substrate specificity for phosphatidylglycerol. Expression is induced by ABA.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G62600.1	protein_coding	DNAJ heat shock family protein	J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. Forms a complex SDF2-ERdj3B-BiP that is required for the proper accumulation of the surface-exposed leucine-rich repeat receptor kinases EFR.  EFR is involved in PAMP (pathogen associated molecular patterns) triggered immunity.	DNAJ heat shock family protein;(source:Araport11)
AT3G62680.1	protein_coding	proline-rich protein 3	Proline-rich protein The mRNA is cell-to-cell mobile.	proline-rich protein 3;(source:Araport11)
AT3G62610.1	protein_coding	myb domain protein 11	Member of the R2R3 factor gene family.	myb domain protein 11;(source:Araport11)
AT3G62690.1	protein_coding	AtL5	Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.	AtL5;(source:Araport11)
AT3G62780.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G62620.1	protein_coding	sucrose-phosphatase-related	Encodes a protein of unknown function. Previously this protein has been annotated computationally as a sucrose-phosphatase-related protein. However, the source of this annotation can not be verified. This annotation (sucrose-phosphatase-related) has been removed.	sucrose-phosphatase-like protein;(source:Araport11)
AT3G62700.1	protein_coding	multidrug resistance-associated protein 10	member of MRP subfamily	multidrug resistance-associated protein 10;(source:Araport11)
AT3G51370.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G51380.1	protein_coding	IQ-domain 20	Ca2+ dependent Calmodulin binding protein.	IQ-domain 20;(source:Araport11)
AT3G51460.1	protein_coding	Phosphoinositide phosphatase family protein	Encodes RHD4 (ROOT HAIR DEFECTIVE4), a phosphatidylinositol-4-phosphate phosphatase required for root hair development. The mRNA is cell-to-cell mobile.	Phosphoinositide phosphatase family protein;(source:Araport11)
AT3G51470.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G51390.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT3G51400.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		hypothetical protein (DUF241);(source:Araport11)
AT3G51480.1	protein_coding	glutamate receptor 3.6	member of Putative ligand-gated ion channel subunit family	glutamate receptor 3.6;(source:Araport11)
AT3G51410.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		hypothetical protein (DUF241);(source:Araport11)
AT3G51490.1	protein_coding	tonoplast monosaccharide transporter3		tonoplast monosaccharide transporter3;(source:Araport11)
AT3G51420.1	protein_coding	strictosidine synthase-like 4	Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.	strictosidine synthase-like 4;(source:Araport11)
AT3G51500.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G51430.1	protein_coding	Calcium-dependent phosphotriesterase superfamily protein	Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.	Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT3G51510.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G51440.1	protein_coding	Calcium-dependent phosphotriesterase superfamily protein		Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT3G51520.1	protein_coding	diacylglycerol acyltransferase family	Encodes a functional acyl-CoA:diacylglycerol acyltransferase with different acyl-CoA substrate preferences and shows higher DAG to TAG conversion rate than AtDGAT1. It increases both C18:2 and C18:3 polyunsaturated fatty acids at the expense of C16:0.	diacylglycerol acyltransferase family;(source:Araport11)
AT3G51450.1	protein_coding	Calcium-dependent phosphotriesterase superfamily protein		Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT3G51530.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT3G51540.1	protein_coding			mucin-5AC-like protein;(source:Araport11)
AT3G51550.1	protein_coding	Malectin/receptor-like protein kinase family protein	Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception.  Also involved in powdery mildew infection. Mutants show faster root elongation under dim light, the protein is required for intracellular accumulation of AHA2 under dim-light growth conditions.	Malectin/receptor-like protein kinase family protein;(source:Araport11)
AT3G60220.1	protein_coding	TOXICOS EN LEVADURA 4	Encodes a putative RING-H2 zinc finger protein ATL4 (ATL4).	TOXICOS EN LEVADURA 4;(source:Araport11)
AT3G60310.1	protein_coding			acyl-CoA synthetase family protein;(source:Araport11)
AT3G60320.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		bZIP domain class transcription factor (DUF630 and DUF632);(source:Araport11)
AT3G60250.1	protein_coding	casein kinase II  beta chain 3	Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in Arabidopsis	casein kinase II beta chain 3;(source:Araport11)
AT3G60260.1	protein_coding	ELMO/CED-12 family protein		ELMO/CED-12 family protein;(source:Araport11)
AT3G60270.1	protein_coding	Cupredoxin superfamily protein		Cupredoxin superfamily protein;(source:Araport11)
AT3G60280.1	protein_coding	uclacyanin 3	Encodes blue copper-binding protein III.	uclacyanin 3;(source:Araport11)
AT3G60290.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G60300.1	protein_coding	RWD domain-containing protein		RWD domain-containing protein;(source:Araport11)
AT3G55830.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	A member of the Glycosyltransferase Family 64, homologous to Poplar cambium-expressed GT64 gene.  The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion, thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant.Loss of function specifically affects glycosylinositolphosphorylceramide (GIPC) mannosylation.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT3G55840.1	protein_coding	Hs1pro-1 protein		Hs1pro-1 protein;(source:Araport11)
AT3G55920.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G55850.1	protein_coding	Amidohydrolase family	Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 1 only in the first few N-terminal amino acids.	Amidohydrolase family;(source:Araport11)
AT3G55930.1	protein_coding	Pre-mRNA-splicing factor 3		pre-mRNA-splicing factor;(source:Araport11)
AT3G56020.1	protein_coding	Ribosomal protein L41 family		Ribosomal protein L41 family;(source:Araport11)
AT3G55860.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G55940.1	protein_coding	Phosphoinositide-specific phospholipase C family protein	Phospholipase C family member. Double mutants with PLC5 show defects in seed coat mucilage, leaf serration and over-expression improves drought tolerance.	Phosphoinositide-specific phospholipase C family protein;(source:Araport11)
AT3G56030.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G55870.1	protein_coding	ADC synthase superfamily protein		ADC synthase superfamily protein;(source:Araport11)
AT3G55950.1	protein_coding	CRINKLY4 related 3		CRINKLY4 related 3;(source:Araport11)
AT3G56040.1	protein_coding	UDP-glucose pyrophosphorylase 3		UDP-glucose pyrophosphorylase 3;(source:Araport11)
AT3G55880.1	protein_coding	Alpha/beta hydrolase related protein	A gain-of-function mutant of SUE4 exhibited improved low sulphur tolerance.	Alpha/beta hydrolase related protein;(source:Araport11)
AT3G55960.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G55890.1	protein_coding	Yippee family putative zinc-binding protein		Yippee family putative zinc-binding protein;(source:Araport11)
AT3G55970.1	protein_coding	jasmonate-regulated gene 21	One of 4 paralogs encoding a 2-oxoglutarate/Fe(II)-dependent oxygenases  that hydroxylates JA to 12-OH-JA.	jasmonate-regulated gene 21;(source:Araport11)
AT3G55900.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G55980.1	protein_coding	salt-inducible zinc finger 1		salt-inducible zinc finger 1;(source:Araport11)
AT3G55910.1	protein_coding			ADP-ribosylation factor GTPase-activating protein;(source:Araport11)
AT3G55990.1	protein_coding	Plant protein of unknown function (DUF828)	Encodes ESK1 (Eskimo1).  A member of a large gene family of DUF231 domain proteins whose members encode a total of 45 proteins of unknown function.  ESK1 functions as a negative regulator of cold acclimation.  Mutations in the ESK1 gene provides strong freezing tolerance.  A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). The mRNA is cell-to-cell mobile.	trichome birefringence-like protein (DUF828);(source:Araport11)
AT3G56000.1	protein_coding	cellulose synthase like A14	encodes a gene similar to cellulose synthase	cellulose synthase like A14;(source:Araport11)
AT3G56010.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G44930.1	protein_coding	cation/H+ exchanger 10	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 10;(source:Araport11)
AT3G44850.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G44860.1	protein_coding	farnesoic acid carboxyl-O-methyltransferase	Encodes a farnesoic acid carboxyl-O-methyltransferase. The mRNA is cell-to-cell mobile.	farnesoic acid carboxyl-O-methyltransferase;(source:Araport11)
AT3G44870.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a protein with 93% identity to a farnesoic acid methyl transferase. SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G44880.1	protein_coding	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain	Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.	Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein;(source:Araport11)
AT3G44890.1	protein_coding	ribosomal protein L9	Plastid ribosomal protein CL9 The mRNA is cell-to-cell mobile.	ribosomal protein L9;(source:Araport11)
AT3G44820.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G44910.1	protein_coding	cation/H+ exchanger 12	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 12;(source:Araport11)
AT3G44900.1	protein_coding	cation/H+ exchanger 4	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 4;(source:Araport11)
AT3G44830.1	protein_coding	Lecithin:cholesterol acyltransferase family protein		Lecithin:cholesterol acyltransferase family protein;(source:Araport11)
AT3G44920.1	protein_coding	cation/H+ exchanger 11	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 11;(source:Araport11)
AT3G44840.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	SABATH methyltransferase	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G12300.1	protein_coding		Similar to Bug22p in Paramecium, a conserved centrosomal/ciliary protein. This protein is widespread in eukaryotes harboring centrioles/cilia at some stage of their life cycles. Among eukaryotes devoid of centrioles/cilia, plants possess BUG22 genes whereas some fungi (at least ascomycetes) do not.	cilia/flagella-associated protein;(source:Araport11)
AT3G12170.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G12280.1	protein_coding	retinoblastoma-related 1	Encodes a retinoblastoma homologue RETINOBLASTOMA-RELATED protein (RBR or RBR1). RBR controls nuclear proliferation in the female gametophyte.  Also required for correct differentiation of male gametophytic cell types.  Regulates stem cell maintenance in Arabidopsis roots. Involved in the determination of cell cycle arrest in G1 phase after sucrose starvation. RBR1 is also involved in regulation of imprinted genes. Together with MSI1 it represses the expression of MET1. This in turn activates expression of the imprinted genes FIS2 and FWA. Functions as a positive regulator of the developmental switch from embryonic heterotrophic growth to autotrophic growth.ChIP studies indicate that one class of targets of RBR1 are transposable elements.	retinoblastoma-related 1;(source:Araport11)
AT3G12180.1	protein_coding	Cornichon family protein		Cornichon family protein;(source:Araport11)
AT3G12260.1	protein_coding	LYR family of Fe/S cluster biogenesis protein		LYR family of Fe/S cluster biogenesis protein;(source:Araport11)
AT3G12190.1	protein_coding			golgin family A protein;(source:Araport11)
AT3G12240.1	protein_coding	serine carboxypeptidase-like 15		serine carboxypeptidase-like 15;(source:Araport11)
AT3G12210.1	protein_coding	DNA binding		DNA binding protein;(source:Araport11)
AT3G12230.1	protein_coding	serine carboxypeptidase-like 14		serine carboxypeptidase-like 14;(source:Araport11)
AT3G12250.1	protein_coding	TGACG motif-binding factor 6	basic leucine zipper transcription factor involved in the activation of SA-responsive genes.	TGACG motif-binding factor 6;(source:Araport11)
AT3G12220.1	protein_coding	serine carboxypeptidase-like 16		serine carboxypeptidase-like 16;(source:Araport11)
AT3G12270.1	protein_coding	protein arginine methyltransferase 3		protein arginine methyltransferase 3;(source:Araport11)
AT3G12203.1	protein_coding	serine carboxypeptidase-like 17		serine carboxypeptidase-like 17;(source:Araport11)
AT3G12290.1	protein_coding	Amino acid dehydrogenase family protein	MTHFD1 encodes a cytoplasmic bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase that is involved in one carbon metabolism and control of DNA methylation.	Amino acid dehydrogenase family protein;(source:Araport11)
AT3G12200.1	protein_coding	NIMA-related kinase 7	Encodes AtNek7, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 7;(source:Araport11)
AT3G12145.1	protein_coding	Leucine-rich repeat (LRR) family protein	A novel leucine-rich repeat protein. Interacts directly with MADS domain transcription factor.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G01860.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G01790.1	protein_coding	Ribosomal protein L13 family protein		Ribosomal protein L13 family protein;(source:Araport11)
AT3G01800.1	protein_coding	Ribosome recycling factor		Ribosome recycling factor;(source:Araport11)
AT3G01810.1	protein_coding			EEIG1/EHBP1 protein amino-terminal domain protein;(source:Araport11)
AT3G01820.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G01830.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G01850.1	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G01840.1	protein_coding	Protein kinase superfamily protein	Encodes a putative LysM-containing receptor-like kinase.  Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant. Based on protein sequence alignment analysis, it was determined to be a pseudo kinase since lack of the ATP-binding P-loop in the kinase domain.	Protein kinase superfamily protein;(source:Araport11)
AT3G06100.1	protein_coding	NOD26-like intrinsic protein 7;1	Encodes NIP7;1, an anther-specific boric acid transporter of the aquaporin superfamily regulated by an unusual tyrosine in helix 2 of the transport pore.	NOD26-like intrinsic protein 7;(source:Araport11)
AT3G06230.1	protein_coding	MAP kinase kinase 8	member of MAP Kinase Kinase	MAP kinase kinase 8;(source:Araport11)
AT3G06110.1	protein_coding	MAPK phosphatase 2	Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.	MAPK phosphatase 2;(source:Araport11)
AT3G06120.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix-loop-helix (bHLH) protein that controls meristemoid differentiation during stomatal development.  In the absence of MUTE, meristemoids abort after excessive asymmetric divisions and fail to differentiate stomata.  MUTE expression in the meristemoid is required for SLGCs differentiation as pavement cells. Epidermal cells lose their competence to respond to MUTE overexpression during cotyledon development.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G06160.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G06240.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G06170.1	protein_coding	Serinc-domain containing serine and sphingolipid biosynthesis protein		Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT3G06250.1	protein_coding	FAR1-related sequence 7		FAR1-related sequence 7;(source:Araport11)
AT3G06130.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G06180.1	protein_coding	Ribosomal protein L34e superfamily protein		Ribosomal protein L34e superfamily protein;(source:Araport11)
AT3G06090.1	protein_coding		homolog of prePIP1	transmembrane protein;(source:Araport11)
AT3G06140.1	protein_coding	RING/U-box superfamily protein	Paralog of LOG2 (At3g09770), a ubiquitin ligase that regulates amino acid export.	RING/U-box superfamily protein;(source:Araport11)
AT3G06190.1	protein_coding	BTB-POZ and MATH domain 2	Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 2;(source:Araport11)
AT3G06260.1	protein_coding	galacturonosyltransferase-like 4	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase-like 4;(source:Araport11)
AT3G06150.1	protein_coding			cytochrome P450 family protein;(source:Araport11)
AT3G06200.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G06270.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G06210.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G06280.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G06220.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G06290.1	protein_coding	SAC3/GANP/Nin1/mts3/eIF-3 p25 family	Encodes a component of the conserved TREX-2 complex that couples mRNA transcription with nucleo-cytoplasmic export, that is required for prevention of epigenetic gene silencing and has additional roles in regulating siRNAs and DNA methylation.	SAC3/GANP/Nin1/mts3/eIF-3 p25 family;(source:Araport11)
AT3G57400.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G57320.1	protein_coding			threonine-tRNA ligase 2;(source:Araport11)
AT3G57240.1	protein_coding	beta-1,3-glucanase 3	encodes a member of glycosyl hydrolase family 17	beta-1,3-glucanase 3;(source:Araport11)
AT3G57330.1	protein_coding	autoinhibited Ca2+-ATPase 11	Lesion mimic phenotype when mutation in the gene is combined with a mutation in ACA4.  Lesion mimic phenotype of double knockout can be suppressed by nutritional supplements that increase anion levels (e.g. 15 mM Nitrate, Chloride, or Phosphate)	autoinhibited Ca2+-ATPase 11;(source:Araport11)
AT3G57250.1	protein_coding	Emsy N Terminus (ENT) domain-containing protein		Emsy N Terminus (ENT) domain-containing protein;(source:Araport11)
AT3G57340.1	protein_coding	Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)		DnaJ heat shock amino-terminal domain protein (DUF1977);(source:Araport11)
AT3G57260.1	protein_coding	beta-1,3-glucanase 2	beta 1,3-glucanase	beta-1,3-glucanase 2;(source:Araport11)
AT3G57350.1	protein_coding	Nucleoporin interacting component (Nup93/Nic96-like) family protein		Nucleoporin interacting component (Nup93/Nic96-like) family protein;(source:Araport11)
AT3G57360.1	protein_coding			tRNA-splicing endonuclease subunit;(source:Araport11)
AT3G57180.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a chloroplast localized protein YL1/BPG2. Involved in seedling shoot response to salt stress through ABI4.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G57190.1	protein_coding	peptide chain release factor, putative	Encodes a chloroplast stroma-localized ribosomal peptide chain release factor that is involved in the light- and stress-dependent regulation of stability of 3' processed petB transcripts to adjust cytochrome b(6) levels. It appears to bind to the 3'-UTR of petB RNA, protecting it from 3'-5' exonucleolytic attack. At-prfB3 arose from a gene duplication of At-prfB1.	peptide chain release factor;(source:Araport11)
AT3G57270.1	protein_coding	beta-1,3-glucanase 1	encodes a member of glycosyl hydrolase family 17	beta-1,3-glucanase 1;(source:Araport11)
AT3G57200.1	protein_coding			glycosyltransferase-like protein;(source:Araport11)
AT3G57280.1	protein_coding	Transmembrane proteins 14C	Encodes a chloroplast inner envelope localized member of the Tmemb_14 gene family. FAX1 is involved in fatty acid and lipid homeostasis and likely functions as a fatty acid transporter that exports fatty acids from the plastid. The mRNA is cell-to-cell mobile.	Transmembrane proteins 14C;(source:Araport11)
AT3G57370.1	protein_coding	Cyclin family protein	Encodes a nuclear-localized member of the TFIIB-related protein family that is involved in regulation of the mitotic cell-cycle progression during male gametogenesis.	Cyclin family protein;(source:Araport11)
AT3G57210.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein;(source:Araport11)
AT3G57290.1	protein_coding	eukaryotic translation initiation factor 3E	Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation.	eukaryotic translation initiation factor 3E;(source:Araport11)
AT3G57380.1	protein_coding	Glycosyltransferase family 61 protein		Glycosyltransferase family 61 protein;(source:Araport11)
AT3G57220.1	protein_coding	Glycosyl transferase family 4 protein		Glycosyl transferase family 4 protein;(source:Araport11)
AT3G57300.1	protein_coding	INO80 ortholog	Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family that has been shown to interact with H2A.Z and facilitates the enrichment of H2A.Z at the ends of the flowering repressor genes FLC and MAF4/5.  Functions as a positive regulator of DNA homologous recombination (HR) and plays a crucial role in genome stability maintenance.  In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type.   Plants mutated in INO80 display a pleiotropic phenotype including smaller plant and organ size, and late flowering but are not more sensitive to genotoxic agents or less efficient at T-DNA integration. INO80 has also been shown to regulate a subset of the Arabidopsis transcriptome.	DNA helicase INO80-like protein;(source:Araport11)
AT3G57390.1	protein_coding	AGAMOUS-like 18	encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.	AGAMOUS-like 18;(source:Araport11)
AT3G57230.1	protein_coding	AGAMOUS-like 16	MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. AGL16 can directly interact with SVP and indirectly interact with FLC. Furthermore, the accumulation of AGL16 transcripts is modulated by miR824 (AT4G24415). The flowering time effect for the miR824/AGL16 module is more obvious in the Col-FRI background than in the Col-0 background. AGL16 controls flowering via a allelic dosage effect in long-day non-vernalized conditions.	AGAMOUS-like 16;(source:Araport11)
AT3G57310.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G54900.1	protein_coding	CAX interacting protein 1	A.thaliana PICOT protein.It activates CAX1 gene Calcium transport activity.In other organisms, PICOT proteins appear to play a negative regulatory role in cellular stress responses.	CAX interacting protein 1;(source:Araport11)
AT3G54910.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G54920.1	protein_coding	Pectin lyase-like superfamily protein	Powdery mildew resistant mutant encodes a pectate lyase-like protein The mRNA is cell-to-cell mobile.	Pectin lyase-like superfamily protein;(source:Araport11)
AT3G54840.1	protein_coding	Ras-related small GTP-binding family protein	Encodes a novel Rab-like  GTP-ase that is localized to the peripheral membrane of the endosome. . In its active state interferes with the assembly of GDP-bound ARA7, PUF2, and VPS9a by competitively binding to PUF2 to diminish endosomal transport mediated by canonical RAB5.	Ras-related small GTP-binding family protein;(source:Araport11)
AT3G54850.1	protein_coding	plant U-box 14	Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro.	plant U-box 14;(source:Araport11)
AT3G54860.1	protein_coding	Sec1/munc18-like (SM) proteins superfamily	Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.	Sec1/munc18-like (SM) proteins superfamily;(source:Araport11)
AT3G54870.1	protein_coding	Armadillo/beta-catenin repeat family protein / kinesin motor family protein	Armadillo-repeat containing  kinesin-related protein. Plays a role during transition to root-hair tip growth.Mutants have short, branched root hairs and an excess of endoplasmic microtubles. Phenotype suggests ARK1 plays a role in modulating microtubule depolymerization during root hair tip growth.An HKT2.4 (CS76404) - ARK1 variant causes root hair branching.	Armadillo/beta-catenin repeat family protein / kinesin motor family protein;(source:Araport11)
AT3G54880.1	protein_coding			zinc finger protein;(source:Araport11)
AT3G54890.1	protein_coding	photosystem I light harvesting complex gene 1	Encodes a component of the light harvesting complex associated with photosystem I.	chlorophyll a-b binding protein 6;(source:Araport11)
AT3G61450.1	protein_coding	syntaxin of plants 73	syntaxin of plants 73 (SYP73)	syntaxin of plants 73;(source:Araport11)
AT3G61540.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G61460.1	protein_coding	brassinosteroid-responsive RING-H2	Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.	brassinosteroid-responsive RING-H2;(source:Araport11)
AT3G61550.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G61470.1	protein_coding	photosystem I light harvesting complex gene 2	Encodes a component of the light harvesting antenna complex of photosystem I. The mRNA is cell-to-cell mobile.	photosystem I light harvesting complex protein;(source:Araport11)
AT3G61560.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G61480.1	protein_coding	Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor		Quinoprotein amine dehydrogenase, beta chain-like;(source:Araport11)
AT3G61570.1	protein_coding	GRIP-related ARF-binding domain-containing protein 1	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast.  A fluorescently-tagged version of GC3 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (161 aa) portion of the protein.	GRIP-related ARF-binding domain-containing protein 1;(source:Araport11)
AT3G61490.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G61580.1	protein_coding	Fatty acid/sphingolipid desaturase		Fatty acid/sphingolipid desaturase;(source:Araport11)
AT3G61410.1	protein_coding			U-box kinase family protein;(source:Araport11)
AT3G61500.1	protein_coding			BPS1-like protein;(source:Araport11)
AT3G61420.1	protein_coding	BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)		BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins);(source:Araport11)
AT3G61510.1	protein_coding	ACC synthase 1	Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.	ACC synthase 1;(source:Araport11)
AT3G61430.1	protein_coding	plasma membrane intrinsic protein 1A	a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. The mRNA is cell-to-cell mobile.	plasma membrane intrinsic protein 1A;(source:Araport11)
AT3G61520.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G61440.1	protein_coding	cysteine synthase C1	Encodes a cysteine synthase isomer CysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an intermediate of cyanide detoxification pathway. The mRNA is cell-to-cell mobile.	cysteine synthase C1;(source:Araport11)
AT3G61530.1	protein_coding	Phosphoenolpyruvate carboxylase family protein	Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.	Phosphoenolpyruvate carboxylase family protein;(source:Araport11)
AT3G49150.1	protein_coding	F-box/RNI-like superfamily protein		F-box/FBD/LRR protein;(source:Araport11)
AT3G49160.1	protein_coding	pyruvate kinase family protein	Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.	pyruvate kinase family protein;(source:Araport11)
AT3G49240.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes NUWA, an imprinted gene that controls mitochondrial function in early seed development.  It is expressed in both the mitochondrion and chloroplast and is also involved in RNA editing in the mitochondrion and chloroplast as a core member of E+-type PPR editosomes.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G49250.1	protein_coding	defective in meristem silencing 3	Similar to hinge-domain region of structural maintenance of chromosomes (SMC)proteins.Putative chromosome architecture protein that can potentialy link nucleic acids in facilitating an RNA1-mediated epigenetic modification involving secondary siRNA and spreading of DNA methylation.	defective in meristem silencing 3;(source:Araport11)
AT3G49340.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G49170.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G49180.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G49260.1	protein_coding	IQ-domain 21		IQ-domain 21;(source:Araport11)
AT3G49350.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT3G49190.1	protein_coding	O-acyltransferase (WSD1-like) family protein		O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT3G49270.1	protein_coding			extensin-like protein;(source:Araport11)
AT3G49360.1	protein_coding	6-phosphogluconolactonase 2	Encodes a cytosolic 6-phosphogluconolactonase (PGL) thought to be involved in the oxidative pentose-phosphate pathway (OPPP).	6-phosphogluconolactonase 2;(source:Araport11)
AT3G49200.1	protein_coding	O-acyltransferase (WSD1-like) family protein		O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT3G49280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1);(source:TAIR10)
AT3G49370.1	protein_coding	Calcium-dependent protein kinase (CDPK) family protein		Calcium-dependent protein kinase (CDPK) family protein;(source:Araport11)
AT3G49210.1	protein_coding	O-acyltransferase (WSD1-like) family protein		O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT3G49290.1	protein_coding	ABL interactor-like protein 2	One of four ABI-like proteins.	ABL interactor-like protein 2;(source:Araport11)
AT3G49380.1	protein_coding	IQ-domain 15	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 15;(source:Araport11)
AT3G49220.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT3G49300.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT3G49390.1	protein_coding	CTC-interacting domain 10	RNA-binding protein, putative, RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196.Member of a family of PAB2 domain containing proteins.	CTC-interacting domain 10;(source:Araport11)
AT3G49230.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G49310.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G49400.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G49320.1	protein_coding	Metal-dependent protein hydrolase		Metal-dependent protein hydrolase;(source:Araport11)
AT3G49330.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G05960.1	protein_coding	sugar transporter 6	Encodes a hexose sugar transporter that is expressed in pollen. STP6 may play a role in providing sugars during late pollen maturation or pollen tube germination.	sugar transporter 6;(source:Araport11)
AT3G06020.1	protein_coding	Protein of unknown function (DUF3049)	A member of the FAF family proteins encoded by the FANTASTIC FOUR (FAF) genes:   AT4G02810 (FAF1), AT1G03170 (FAF2), AT5G19260 (FAF3) and AT3G06020 (FAF4).  FAFs have the potential to regulate shoot meristem size in Arabidopsis thaliana. FAFs can repress WUS, which ultimately leads to an arrest of meristem activity in FAF overexpressing lines.	FANTASTIC four-like protein (DUF3049);(source:Araport11)
AT3G05970.1	protein_coding	long-chain acyl-CoA synthetase 6	encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymes	long-chain acyl-CoA synthetase 6;(source:Araport11)
AT3G05980.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G05990.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G06000.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G06010.1	protein_coding	Homeotic gene regulator	Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein.  AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.	SNF2/Brahma-type chromatin-remodeling protein CHR12;(source:Araport11)
AT3G49930.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT3G50020.1	protein_coding	Serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family.  Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	Serine protease inhibitor, potato inhibitor I-type family protein;(source:Araport11)
AT3G49940.1	protein_coding	LOB domain-containing protein 38		LOB domain-containing protein 38;(source:Araport11)
AT3G50030.1	protein_coding	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein		ARM-repeat/Tetratricopeptide repeat (TPR)-like protein;(source:Araport11)
AT3G49950.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT3G50120.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G50040.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G49960.1	protein_coding	Peroxidase superfamily protein	Its expression is enriched in root hair cells (compared to non-root hair cells) and this enrichment is associated with increase in the transcription-associated mark trimethylation of H3 lysine 4 (H3K4me3) and decrease in the Polycomb silencing-associated mark trimethylation of H3 lysine 27 (H3K27me3) in root hair cells relative to non-root hair cells.	Peroxidase superfamily protein;(source:Araport11)
AT3G50130.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G50050.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G49970.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G50140.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G50060.1	protein_coding	myb domain protein 77	Encodes a member of the R2R3 transcription factor gene family. Expressed in response to potassium deprivation and auxin. Involved in lateral root development. Interacts with ARF7 and regulates the expression of some auxin responsive genes.	myb domain protein 77;(source:Araport11)
AT3G49980.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G50150.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G50070.1	protein_coding	CYCLIN D3;3	Encode CYCD3;3, a CYCD3 D-type cyclin.  Important for determining cell number in developing lateral organs.  Mediating cytokinin effects in apical growth and development.	CYCLIN D3;(source:Araport11)
AT3G49990.1	protein_coding			Low temperature viability protein;(source:Araport11)
AT3G50160.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G50080.1	protein_coding	VIER F-box proteine 2	Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.	VIER F-box protein 2;(source:Araport11)
AT3G50000.1	protein_coding	casein kinase II, alpha chain 2	Encodes the casein kinase II (CK2) catalytic subunit (alpha).	casein kinase II, alpha chain 2;(source:Araport11)
AT3G50090.1	protein_coding	Exonuclease family protein		Exonuclease family protein;(source:Araport11)
AT3G50010.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G50100.1	protein_coding	small RNA degrading nuclease 1	Encodes an exonuclease that degrades single-stranded small RNAs in vitro and limits the accumulation of small RNAs in vivo. Initiates the turnover of ARGONAUTE1 (AGO1)-bound microRNAs in Arabidopsis by trimming their 3&#8242; ends.	small RNA degrading nuclease 1;(source:Araport11)
AT3G50110.1	protein_coding	PTEN 3	Encodes a phosphatase with low in vitro tyrosine phosphatase activity that is NOT capable of dephosphorylating in vitro the 3'phosphate group of PI3P, PI(3,4)P2.	PTEN 3;(source:Araport11)
AT3G52610.1	protein_coding			GATA zinc finger protein;(source:Araport11)
AT3G52620.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G52700.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G52630.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT3G52710.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G52800.1	protein_coding	A20/AN1-like zinc finger family protein		A20/AN1-like zinc finger family protein;(source:Araport11)
AT3G52720.1	protein_coding	alpha carbonic anhydrase 1	Encodes an alpha carbonic anhydrase (CAH1) located in the chloroplast stroma. Most chloroplast proteins are encoded by the nuclear genome and imported with the help of sorting signals that are intrinsic parts of the polypeptides. CAH1 takes an alternative route through the secretory pathway, and becomes N-glycosylated before entering the chloroplast.  Glycosylation and intra-molecular disulfide bridge fromation are necessary for the correct folding, ER export, trafficking and activity of the protein.	alpha carbonic anhydrase 1;(source:Araport11)
AT3G52810.1	protein_coding	purple acid phosphatase 21		purple acid phosphatase 21;(source:Araport11)
AT3G52640.1	protein_coding	Zn-dependent exopeptidases superfamily protein	Encodes a gamma-secretase subunit.  Associates with other subunits in intracellular membrane compartments.	Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT3G52730.1	protein_coding	ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein		ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein;(source:Araport11)
AT3G52820.1	protein_coding	purple acid phosphatase 22		purple acid phosphatase 22;(source:Araport11)
AT3G52740.1	protein_coding		Plant specific protein.BIC1 and BIC2  inhibit cryptochrome function by blocking blue light-dependent cryptochrome dimerization.Light activated transcription of BICs is mediated by cryptochromes.	hypothetical protein;(source:Araport11)
AT3G52660.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G52750.1	protein_coding	Tubulin/FtsZ family protein	Nuclear gene that encodes a plastidial division protein (FtsZ2-2).   FtsZ2-2 is involved in chloroplast morphology and internal organisation in addition to participating in chloroplast partition	Tubulin/FtsZ family protein;(source:Araport11)
AT3G52670.1	pseudogene	FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein		FBD;(source:Araport11)
AT3G52680.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT3G52760.1	protein_coding	Integral membrane Yip1 family protein		Integral membrane Yip1 family protein;(source:Araport11)
AT3G52690.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G52770.1	protein_coding	protein binding	ZPR3 is a small-leucine zipper containing protein that is involved in the establishment of leaf polarity.	binding protein;(source:Araport11)
AT3G52780.1	protein_coding	Purple acid phosphatases superfamily protein		Purple acid phosphatases superfamily protein;(source:Araport11)
AT3G52790.1	protein_coding	peptidoglycan-binding LysM domain-containing protein		peptidoglycan-binding LysM domain-containing protein;(source:Araport11)
AT3G06830.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT3G06720.1	protein_coding	importin alpha isoform 1	Encodes importin alpha involved in nuclear import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	importin alpha isoform 1;(source:Araport11)
AT3G06820.1	protein_coding	Mov34/MPN/PAD-1 family protein		Mov34/MPN/PAD-1 family protein;(source:Araport11)
AT3G06810.1	protein_coding	acyl-CoA dehydrogenase-related	Encodes a protein with similarity to acyl-CoA dehydrogenases. Mutations in IBR3 render   plants resistant to indole-3-butryic acid, a putative storage form of the biologically active auxin IAA  (indole-3-acetic acid). IBR3 is hypothesized to carry out the second step in a  &#946;-oxidation-like process of IBA metabolism in Arabidopsis.  Though its subcellular location has not been determined, IBR3 has a peroxisomal targeting  sequence and  two other putative IBA metabolic enzymes (IBR1 and IBR10)  can be found in this organelle. No specific enzymatic activity has been  documented for IBR3, but double mutant analyses with CHY1 argue against a role for IBR3 in general fatty  acid &#946;-oxidation. The mRNA is cell-to-cell mobile.	acyl-CoA dehydrogenase-like protein;(source:Araport11)
AT3G06790.1	protein_coding	plastid developmental protein DAG, putative	Encodes a protein involved in RNA editing in mitochondria. Member of MORF family consisting of of nine full-length proteins encoded in the nuclear genome. MORF proteins are required for all RNA editing events in plastids and for many, possibly also all, sites in mitochondria. Potential link between the RNA binding PPR protein and the protein contributing the enzymatic activity in RNA editing.	plastid developmental protein DAG;(source:Araport11)
AT3G06780.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT3G06850.1	protein_coding	2-oxoacid dehydrogenases acyltransferase family protein	dihydrolipoamide branched chain acyltransferase	2-oxoacid dehydrogenases acyltransferase family protein;(source:Araport11)
AT3G06760.1	protein_coding	Drought-responsive family protein		Drought-responsive family protein;(source:Araport11)
AT3G06750.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G06770.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G06740.1	protein_coding	GATA transcription factor 15	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 15;(source:Araport11)
AT3G06840.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G06730.1	protein_coding	Thioredoxin z	Encodes a plastidial thioredoxin (TRX) isoform that defines a branch of plastidial TRXs lying between x- and y-type TRXs and thus was named TRX z. Possesses disulfide reductase activity in vitro. TRX z was previously named as Trx p (thioredoxin putative and plastidic) before its thioredoxin activity was confirmed (Meng et al., PNAS 2010, 107:3900). Knockout mutant of TRX z has a severe albino phenotype and is inhibited in chloroplast development. Two fructokinase-like proteins (FLN1 and FLN2), members of the pfkB-carbohydrate kinase family, are potential TRX z targets.	Thioredoxin z;(source:Araport11)
AT3G20650.1	protein_coding	mRNA capping enzyme family protein		mRNA capping enzyme family protein;(source:Araport11)
AT3G20660.1	protein_coding	organic cation/carnitine transporter4		organic cation/carnitine transporter4;(source:Araport11)
AT3G20670.1	protein_coding	histone H2A 13	Encodes HTA13, a histone H2A protein.	histone H2A 13;(source:Araport11)
AT3G20680.1	protein_coding	Domain of unknown function (DUF1995)		plant/protein (DUF1995);(source:Araport11)
AT3G20700.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G20690.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G20710.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G20640.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G09380.1	protein_coding	Protein of unknown function (DUF59)		MIP18 family protein;(source:Araport11)
AT3G09230.1	protein_coding	myb domain protein 1	member of MYB3R- and R2R3- type MYB- encoding genes	myb domain protein 1;(source:Araport11)
AT3G09310.1	protein_coding			membrane protein insertion efficiency factor;(source:Araport11)
AT3G09240.1	protein_coding	Protein kinase protein with tetratricopeptide repeat domain		kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT3G09320.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT3G09250.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein		Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT3G09390.1	protein_coding	metallothionein 2A	metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage	metallothionein 2A;(source:Araport11)
AT3G09260.1	protein_coding	Glycosyl hydrolase superfamily protein	Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT3G09330.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT3G09400.1	protein_coding	pol-like 3	Similar to POLTERGEIST (POL) protein phosphatase 2C. No phenotype observed in plants homozygous for a null allele. Ubiquitously expressed.	pol-like 3;(source:Araport11)
AT3G09270.1	protein_coding	glutathione S-transferase TAU 8	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 8;(source:Araport11)
AT3G09340.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT3G09280.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G09350.1	protein_coding	Fes1A	Encodes one of the Arabidopsis orthologs of the human Hsp70-binding protein 1 (HspBP-1) and yeast Fes1p: Fes1A (AT3G09350), Fes1B (AT3G53800), Fes1C (AT5G02150). Fes1A is cytosolic and associates with cytosolic Hsp70.  Mutants showed increased heat-sensitive phenotype suggestion the involvement of Fes1A in acquired thermotolerance.  Does not have nucleotide exchange factor activity in vitro.	Fes1A;(source:Araport11)
AT3G09200.1	protein_coding	Ribosomal protein L10 family protein		Ribosomal protein L10 family protein;(source:Araport11)
AT3G09410.1	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT3G09290.1	protein_coding	telomerase activator1	encodes activation factor TAC1 which mediates telomerase activity	telomerase activator1;(source:Araport11)
AT3G09360.1	protein_coding	Cyclin/Brf1-like TBP-binding protein	Cyclin/Brf1-like TBP-binding protein. Double mutants with BRF1 show defects in pollen development.	Cyclin/Brf1-like TBP-binding protein;(source:Araport11)
AT3G09210.1	protein_coding	plastid transcriptionally active 13		plastid transcriptionally active 13;(source:Araport11)
AT3G09300.1	protein_coding	OSBP(oxysterol binding protein)-related protein 3B		OSBP(oxysterol binding protein)-related protein 3B;(source:Araport11)
AT3G09370.1	protein_coding	myb domain protein 3r-3	C-myb-like transcription factor (MYB3R3) mRNA. It is a target of CDK phosphorylation and  blocks cell division in response to DNA damage.	myb domain protein 3r-3;(source:Araport11)
AT3G09220.1	protein_coding	laccase 7	putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	laccase 7;(source:Araport11)
AT3G09430.1	protein_coding			peptide transporter family protein;(source:Araport11)
AT3G15130.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G15140.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	ERI (At3g15140) encodes a protein of 337 amino acids of the ribonuclease H-like superfamily.  The protein contains both DEDDh and  SAP domains.The first exon contains a TCT-microsatellite structure (starting 226 bp after ATG) that, based on sequence complementarity, is a miR5021-cleavage target site. ERI is predicted to function as an siRNA exonuclease. Overexpression leads to increased post transcriptional gene silencing and reduced numbers of 21mers. Macroscopically, the growth rate is increased in overexpressors leading to increased biomass.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G15150.1	protein_coding	RING/U-box superfamily protein	Encodes a SUMO E3 ligase that regulates endocycle onset and meristem maintenance.	RING/U-box superfamily protein;(source:Araport11)
AT3G15160.1	protein_coding			AP-5 complex subunit zeta-1;(source:Araport11)
AT3G15170.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). <i>Cuc</i> mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT3G15190.1	protein_coding	chloroplast 30S ribosomal protein S20, putative		chloroplast 30S ribosomal protein S20;(source:Araport11)
AT3G15180.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G15200.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G15110.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G15120.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes BRP1, an ATPase domain-containing protein that interacts with BRAT1 to negatively regulate transcriptional silencing at methylated genomic regions.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G51910.1	protein_coding	heat shock transcription factor  A7A	member of Heat Stress Transcription Factor (Hsf) family The mRNA is cell-to-cell mobile.	heat shock transcription factor A7A;(source:Araport11)
AT3G52000.1	protein_coding	serine carboxypeptidase-like 36		serine carboxypeptidase-like 36;(source:Araport11)
AT3G51920.1	protein_coding	calmodulin 9	encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1) but only  when selected against the plasmid harboring wild-type yeast sequences. Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms. Mutations in this gene alter plant responses to abiotic stress and abscisic acid.	calmodulin 9;(source:Araport11)
AT3G52010.1	protein_coding	serine carboxypeptidase-like 37		serine carboxypeptidase-like 37;(source:Araport11)
AT3G51930.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G52100.1	protein_coding	RING/FYVE/PHD-type zinc finger family protein		RING/FYVE/PHD-type zinc finger family protein;(source:Araport11)
AT3G52020.1	protein_coding	serine carboxypeptidase-like 39		serine carboxypeptidase-like 39;(source:Araport11)
AT3G51940.1	protein_coding			oxidoreductase/transition metal ion-binding protein;(source:Araport11)
AT3G52110.1	protein_coding			interferon-activable protein;(source:Araport11)
AT3G52030.1	protein_coding	F-box family protein with WD40/YVTN repeat doamin		F-box family protein with WD40/YVTN repeat doamin;(source:Araport11)
AT3G51950.1	protein_coding	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein	Contains single CCCH domain.	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT3G52120.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein;(source:Araport11)
AT3G52040.1	protein_coding			2,3-bisphosphoglycerate-dependent phosphoglycerate mutase;(source:Araport11)
AT3G51960.1	protein_coding	basic leucine zipper 24	bZIP transcription  factor induced by salt stress and promoted salt tolerance. Localized to the cytoplasm and nucleus under control conditions and targeted preferentially to the nucleus under salt stress	basic leucine zipper 24;(source:Araport11)
AT3G52130.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G52050.1	protein_coding	5'-3' exonuclease family protein		5-3 exonuclease family protein;(source:Araport11)
AT3G51970.1	protein_coding	acyl-CoA sterol acyl transferase 1		acyl-CoA sterol acyl transferase 1;(source:Araport11)
AT3G52140.1	protein_coding	tetratricopeptide repeat (TPR)-containing protein	Involved in regulating mitochondrial quality control. Regulates mitochondrial association time and thereby is involved in mitochondrial fusion. Mutants show unregulated autophagy and display transcriptomic markers of mitochondrial stress. Its activity can be modulated by Lys acetylation.	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G52060.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	Encodes a plasmodesmal glycosyltransferase-like protein.  Mutation results in defects in seed germination and delayed plant growth.	core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT3G51980.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G52150.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G51990.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G52070.1	protein_coding			RNA/RNP complex-1-interacting phosphatase;(source:Araport11)
AT3G52160.1	protein_coding	3-ketoacyl-CoA synthase 15	Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 15;(source:Araport11)
AT3G52080.1	protein_coding	cation/hydrogen exchanger 28	encodes a cation:proton exchanger expressed in pollen	cation/hydrogen exchanger 28;(source:Araport11)
AT3G52090.1	protein_coding	DNA-directed RNA polymerase, RBP11-like	Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit.	DNA-directed RNA polymerase, RBP11-like protein;(source:Araport11)
AT3G42110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1);(source:TAIR10)
AT3G42120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12610.1);(source:TAIR10)
AT3G42130.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT3G42050.1	protein_coding	vacuolar ATP synthase subunit H family protein		vacuolar ATP synthase subunit H family protein;(source:Araport11)
AT3G42060.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT3G42070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G38380.1);(source:TAIR10)
AT3G42080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);contains InterPro domain t-snare;(source:TAIR10)
AT3G42090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);contains domain LIN-9 RELATED (PTHR21689);(source:TAIR10)
AT3G42100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT1G35940.1);(source:TAIR10)
AT3G53320.1	protein_coding		Encodes a microtubule-associated protein track growing microtubule plus ends.	mediator of RNA polymerase II transcription subunit-like protein;(source:Araport11)
AT3G53330.1	protein_coding	plastocyanin-like domain-containing protein		plastocyanin-like domain-containing protein;(source:Araport11)
AT3G53500.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain	Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT3G53340.1	protein_coding	nuclear factor Y, subunit B10		nuclear factor Y, subunit B10;(source:Araport11)
AT3G53510.1	protein_coding	ABC-2 type transporter family protein	Belongs to a clade of five Arabidopsis thaliana ABCG half-transporters that are required for synthesis of an effective suberin barrier in roots and seed coats (ABCG2, ABCG6, and ABCG20) and for synthesis of an intact pollen wall (ABCG1 and ABCG16).	ABC-2 type transporter family protein;(source:Araport11)
AT3G53350.1	protein_coding	ROP interactive partner 4	Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.	ROP interactive partner 4;(source:Araport11)
AT3G53520.1	protein_coding	UDP-glucuronic acid decarboxylase 1	Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis.  This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate  several cell wall biosynthetic enzymes.	UDP-glucuronic acid decarboxylase 1;(source:Araport11)
AT3G53360.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G53530.1	protein_coding	Chloroplast-targeted copper chaperone protein		Chloroplast-targeted copper chaperone protein;(source:Araport11)
AT3G53370.1	protein_coding	S1FA-like DNA-binding protein		S1FA-like DNA-binding protein;(source:Araport11)
AT3G53540.1	protein_coding			afadin;(source:Araport11)
AT3G53380.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G53550.1	protein_coding	FBD-like domain family protein		FBD-like domain family protein;(source:Araport11)
AT3G53390.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G53560.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G53570.1	protein_coding	FUS3-complementing gene 1	a  member of a CDC2-related kinase subfamily,  the LAMMER kinases. activates STE12-dependent functions in yeast.	serine/threonine-protein kinase AFC1;(source:Araport11)
AT3G53580.1	protein_coding	diaminopimelate epimerase family protein		diaminopimelate epimerase family protein;(source:Araport11)
AT3G53590.1	protein_coding	Leucine-rich repeat protein kinase family protein		LRR receptor-like Serine/Threonine-kinase;(source:Araport11)
AT3G53400.1	protein_coding			peptide upstream protein;(source:Araport11)
AT3G53410.1	protein_coding	RING/U-box superfamily protein	Paralog of LOG2 (At3g09770), a ubiquitin ligase that regulates amino acid export.	RING/U-box superfamily protein;(source:Araport11)
AT3G53420.1	protein_coding	plasma membrane intrinsic protein 2A	a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev.   When expressed in yeast cells can conduct hydrogen peroxide into those cells.	plasma membrane intrinsic protein 2A;(source:Araport11)
AT3G53430.1	protein_coding	Ribosomal protein L11 family protein		Ribosomal protein L11 family protein;(source:Araport11)
AT3G53440.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G53600.1	protein_coding	C2H2-type zinc finger family protein	Nuclear C2H2 zinc finger protein.Expression is induced by cold, osmotic, salt, and drought stress. Over expression confers some drought tolerance whereas mutants display some drought sensitivity.	C2H2-type zinc finger family protein;(source:Araport11)
AT3G53450.1	protein_coding	Putative lysine decarboxylase family protein		Putative lysine decarboxylase family protein;(source:Araport11)
AT3G53610.1	protein_coding	RAB GTPase homolog 8	GTPase AtRAB8 (atrab8)	RAB GTPase homolog 8;(source:Araport11)
AT3G53460.1	protein_coding	chloroplast RNA-binding protein 29	Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast.	chloroplast RNA-binding protein 29;(source:Araport11)
AT3G53620.1	protein_coding	pyrophosphorylase 4	Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate. The mRNA is cell-to-cell mobile.	pyrophosphorylase 4;(source:Araport11)
AT3G53470.1	protein_coding			2,3-bisphosphoglycerate-independent phosphoglycerate mutase;(source:Araport11)
AT3G53630.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G53480.1	protein_coding	pleiotropic drug resistance 9	Negative regulator of auxin polar transport inhibitors. ABCG37 regulates auxin distribution and homeostasis  in roots by excluding IBA from the root apex, but does  not act directly in basipetal transport. ABCG37 and ABCG36 act redundantly at outermost root plasma  membranes and, transport IBA out of the cells. Also involved in root transmembrane secretion of fluorescent phenolics involved in Fe uptake. The mRNA is cell-to-cell mobile.	pleiotropic drug resistance 9;(source:Araport11)
AT3G53640.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G53490.1	protein_coding			valine-tRNA ligase;(source:Araport11)
AT3G53650.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT3G53670.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G53680.1	protein_coding	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain		Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein;(source:Araport11)
AT3G01510.1	protein_coding	like SEX4 1	Encodes a putative phosphatase, LSF1, required for normal starch turnover in leaves.	like SEX4 1;(source:Araport11)
AT3G01480.1	protein_coding	cyclophilin 38	Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes. The mRNA is cell-to-cell mobile.	cyclophilin 38;(source:Araport11)
AT3G01670.1	protein_coding		Encodes a protein localized to phloem filaments that is required for phloem filament formation. The mRNA is cell-to-cell mobile.	sieve element occlusion protein;(source:Araport11)
AT3G01600.1	protein_coding	NAC domain containing protein 44		NAC domain containing protein 44;(source:Araport11)
AT3G01520.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	Encodes a universal stress protein (USP)-like protein that has been crystallized in complex with AMP, suggesting that it belongs to the ATP-binding USP subfamily. The mRNA is cell-to-cell mobile.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G01680.1	protein_coding		Encodes a protein localized to phloem filaments that is required for phloem filament formation. The mRNA is cell-to-cell mobile.	sieve element occlusion amino-terminus protein;(source:Araport11)
AT3G01610.1	protein_coding	cell division cycle 48C	AAA-type ATPase - Over 90% homologous to CDC48a	cell division cycle 48C;(source:Araport11)
AT3G01530.1	protein_coding	myb domain protein 57	Member of the R2R3 factor gene family.MYB57 interacts with JAZ proteins, and functions redundantly with MYB21 and MYB24 to regulate stamen development.	myb domain protein 57;(source:Araport11)
AT3G01620.1	protein_coding	beta-1,4-N-acetylglucosaminyltransferase family protein		beta-1,4-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT3G01540.1	protein_coding	DEAD box RNA helicase 1	RNA HELICASE DRH1	DEAD box RNA helicase 1;(source:Araport11)
AT3G01630.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G01580.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G01490.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G01500.1	protein_coding	carbonic anhydrase 1	Encodes a putative beta-carbonic anhydrase betaCA1.  Together with betaCA4 (At1g70410) regulates CO2-controlled stomatal movements in guard cells.	carbonic anhydrase 1;(source:Araport11)
AT3G01550.1	protein_coding	phosphoenolpyruvate (pep)/phosphate translocator 2		phosphoenolpyruvate (pep)/phosphate translocator 2;(source:Araport11)
AT3G01640.1	protein_coding	glucuronokinase G	AtGlcAK is a sugar kinase able to phosphorylate D-GlcA to D-GlcA-1-phosphate in the presence of ATP.	glucuronokinase G;(source:Araport11)
AT3G01560.1	protein_coding	Protein of unknown function (DUF1421)		proline-rich receptor-like kinase, putative (DUF1421);(source:Araport11)
AT3G01650.1	protein_coding	RING domain ligase1	Encodes RGLG1 (RING domain ligase 1), a RING domain ubiquitin E3 ligase that negatively regulates the drought stress response by mediating ERF53 transcriptional activity.  ABA inhibits myristoylation and induces shuttling of the RGLG1 to promote nuclear degradation of PP2CA.	RING domain ligase1;(source:Araport11)
AT3G01570.1	protein_coding	Oleosin family protein		Oleosin family protein;(source:Araport11)
AT3G01470.1	protein_coding	homeobox 1	Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf and hypocotyl development. Its promoter is bound by PIF1 which likely regulates its expression.  Its translation is regulated by a conserved upstream ORF (CPuORF33).	homeobox 1;(source:Araport11)
AT3G01590.1	protein_coding	Galactose mutarotase-like superfamily protein		Galactose mutarotase-like superfamily protein;(source:Araport11)
AT3G01660.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G66652.1	protein_coding	fip1 motif-containing protein		fip1 motif-containing protein;(source:Araport11)
AT3G06570.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G06490.1	protein_coding	myb domain protein 108	Encodes a MYB transcription factor involved in regulating anther dehiscence as well as regulating cell death, and cuticle-related Botrytis immunity.	myb domain protein 108;(source:Araport11)
AT3G06560.1	protein_coding	poly(A) polymerase 3	Encodes a poly(A) polymerase. Located in the cytoplasm.	poly(A) polymerase 3;(source:Araport11)
AT3G06550.1	protein_coding	O-acetyltransferase family protein	Encodes a homolog of the protein Cas1p known to be involved in polysaccharide O-acetylation in Cryptococcus neoformans.  Mutants show reduced cell wall polysaccharide acetylation and increased resistance to Botrytis cinerea. The protein is expressed in the Golgi and is involved in the acetylation of xylan during secondary wall biosynthesis.	O-acetyltransferase family protein;(source:Araport11)
AT3G06540.1	protein_coding	Rab escort protein	Encodes a cytoplasmic Rab escort protein that preferentially binds the GDP-bound form of Rab and stimulates geranylgeranylation of various Rab GTPases in Arabidopsis  extracts in vitro.	Rab escort protein;(source:Araport11)
AT3G06530.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G06520.1	protein_coding	agenet domain-containing protein		agenet domain-containing protein;(source:Araport11)
AT3G06620.1	protein_coding	PAS domain-containing protein tyrosine kinase family protein		PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT3G06510.1	protein_coding	Glycosyl hydrolase superfamily protein	Encodes a protein with beta-glucosidase and galactosyltransferase activity, mutants show increased sensitivity to freezing.  Though it is classified as a family I glycosyl hydrolase, it has no hydrolase activity in vitro.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT3G06610.1	protein_coding	DNA-binding enhancer protein-related		DNA-binding enhancer protein-like protein;(source:Araport11)
AT3G06500.1	protein_coding	Plant neutral invertase family protein	Encodes an alkaline/neutral invertase which localizes in mitochondria.  It may be modulating hormone balance in relation to the radicle emergence. Mutants display severely reduced shoot growth and reduced oxygen consumption.  Mutant root development is not affected as reported for A/N-InvA mutant (inva) plants. The mRNA is cell-to-cell mobile.	Plant neutral invertase family protein;(source:Araport11)
AT3G06600.1	protein_coding		At3G06600 encodes the plant KASH protein SINE3; SINE3 interacts with SUN1 and SUN2 and is localized at the nuclear envelope.	transmembrane protein;(source:Araport11)
AT3G06590.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes RITF1, a bHLH transcription factor that regulates the transcription of several genes involved in the detoxification of reactive oxygen species generated by salt stress.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G06580.1	protein_coding	Mevalonate/galactokinase family protein	Encodes a protein with galactose kinase activity. The gene was shown to complement the yeast Ägal1 mutant defective in the galactokinase gene GAL1.	Mevalonate/galactokinase family protein;(source:Araport11)
AT3G53710.1	protein_coding	ARF-GAP domain 6	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	ARF-GAP domain 6;(source:Araport11)
AT3G53800.1	protein_coding	Fes1B	Encodes one of the Arabidopsis orthologs of the human Hsp70-binding protein 1 (HspBP-1) and yeast Fes1p: Fes1A (AT3G09350), Fes1B (AT3G53800), Fes1C (AT5G02150).	Fes1B;(source:Araport11)
AT3G53720.1	protein_coding	cation/H+ exchanger 20	member of Putative Na+/H+ antiporter family.  Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells.	cation/H+ exchanger 20;(source:Araport11)
AT3G53810.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G53730.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT3G53900.1	protein_coding	uracil phosphoribosyltransferase	Encodes UPP, a plastidial uracil phosphoribosyltransferase (UPRT) involved in uracil salvage.  Loss-of-function mutation causes dramatic growth retardation, a pale-green to albino phenotype, abnormal root morphology and chloroplastic disorders.	uracil phosphoribosyltransferase;(source:Araport11)
AT3G53820.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT3G53740.1	protein_coding	Ribosomal protein L36e family protein		Ribosomal protein L36e family protein;(source:Araport11)
AT3G53910.1	protein_coding	malate dehydrogenase-related		malate dehydrogenase-like protein;(source:Araport11)
AT3G53830.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G53750.1	protein_coding	actin 3	Member of the Actin gene family. Expressed in mature pollen.	actin 3;(source:Araport11)
AT3G54000.1	protein_coding			TIP41-like protein;(source:Araport11)
AT3G53920.1	protein_coding	RNApolymerase sigma-subunit C	Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme.  SIG3 transcribes specifically the psbN gene in plastids.	RNApolymerase sigma-subunit C;(source:Araport11)
AT3G53840.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G53760.1	protein_coding	GAMMA-TUBULIN COMPLEX PROTEIN 4	Encodes GCP4 (gamma-Tubulin Complex Protein 4), required for microtubule organization.	GAMMA-TUBULIN COMPLEX PROTEIN 4;(source:Araport11)
AT3G54010.1	protein_coding	FKBP-type peptidyl-prolyl cis-trans isomerase family protein	Immunophilin-like protein similar to the p59 FK506-binding protein (FKBP52). Shows rotamase activity and contains an FKBP-like domain and three tetratricopeptide repeat units. Members of this class of mutation show ectopic cell proliferation in cotyledons. Gene may be alternatively spliced.  Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	FKBP-type peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G53930.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G53850.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT3G53770.1	protein_coding	late embryogenesis abundant 3 (LEA3) family protein		late embryogenesis abundant 3 (LEA3) family protein;(source:Araport11)
AT3G54020.1	protein_coding	Arabidopsis Inositol phosphorylceramide synthase 1	Inositol phosphorylceramide synthase	Inositol phosphorylceramide synthase 1;(source:Araport11)
AT3G53940.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT3G53780.1	protein_coding	RHOMBOID-like protein 4		RHOMBOID-like protein 4;(source:Araport11)
AT3G53860.1	protein_coding			INO80 complex subunit D-like protein;(source:Araport11)
AT3G54030.1	protein_coding	Protein kinase protein with tetratricopeptide repeat domain		kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT3G53950.1	protein_coding	glyoxal oxidase-related protein		glyoxal oxidase-related protein;(source:Araport11)
AT3G53790.1	protein_coding	TRF-like 4	Arabidopsis thaliana telomere-binding protein, putative (At3g53790)	TRF-like 4;(source:Araport11)
AT3G53870.1	protein_coding	Ribosomal protein S3 family protein		Ribosomal protein S3 family protein;(source:Araport11)
AT3G54040.1	protein_coding	PAR1 protein		PAR1 protein;(source:Araport11)
AT3G53960.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G53880.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT3G53970.1	protein_coding	proteasome inhibitor-related	PTRE1 was identified as homologous to human PI31. It has a conserved proline-rich domain at the C-terminus and a highly conserved FP (Fbxo7/PI31) dimerization domain at the N-terminus as well as some novel, conserved domains found only in plants. It regulates auxin signaling possibly via its proteosome suppressing activity.	proteasome inhibitor-like protein;(source:Araport11)
AT3G53890.1	protein_coding	Ribosomal protein S21e 	Cytosolic ribosomal protein. Mutants enhance the varigation effect of var2 mutations suggesting a link between cytosolic translation and chloroplast development.	Ribosomal protein S21e;(source:Araport11)
AT3G53980.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G53990.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	Encodes universal stress protein (USP). Functions as a molecular chaperone under heat shock and oxidative stress conditions. Chaperone activity and assembly into complexes is redox regulated.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G22860.1	protein_coding	eukaryotic translation initiation factor 3 subunit C2	member of eIF3c - eukaryotic initiation factor 3c	eukaryotic translation initiation factor 3 subunit C2;(source:Araport11)
AT3G22930.1	protein_coding	calmodulin-like 11	Encodes a calmodulin-like protein.	calmodulin-like 11;(source:Araport11)
AT3G22870.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G22940.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G22880.1	protein_coding	DNA repair (Rad51) family protein	Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.	DNA repair (Rad51) family protein;(source:Araport11)
AT3G22890.1	protein_coding	ATP sulfurylase 1	encodes ATP sulfurylase, the first enzyme in the sulfate assimilation pathway of Arabidopsis. It may also participate in selenium metabolism. The mRNA is cell-to-cell mobile.	ATP sulfurylase 1;(source:Araport11)
AT3G22950.1	protein_coding	ADP-ribosylation factor C1	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor GB:P91924 (Dugesia japonica), other ARFs and ARF-like proteins.	ADP-ribosylation factor C1;(source:Araport11)
AT3G22900.1	protein_coding	RNA polymerase Rpb7-like, N-terminal domain	Non-catalytic subunit specific to DNA-directed RNA polymerase IV; homologous to budding yeast RPB7	RNA polymerase Rpb7-like, N-terminal domain-containing protein;(source:Araport11)
AT3G22910.1	protein_coding	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein		ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT3G22960.1	protein_coding	Pyruvate kinase family protein	encodes a chloroplast pyruvate kinase alpha subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds. The mRNA is cell-to-cell mobile.	Pyruvate kinase family protein;(source:Araport11)
AT3G22920.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G22970.1	protein_coding	Protein of unknown function (DUF506) 		hypothetical protein (DUF506);(source:Araport11)
AT3G22850.1	protein_coding	Aluminium induced protein with YGL and LRDR motifs		aluminum induced protein with YGL and LRDR motifs;(source:Araport11)
AT3G32180.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G32280.1	protein_coding	ATP-dependent helicase family protein		ATP-dependent helicase family protein;(source:Araport11)
AT3G32190.1	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT3G32230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 9.8e-150 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT3G32290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.0e-22 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G32200.1	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT3G32240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.9e-90 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G32300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G32250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.7e-106 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G32210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GB:AAD19770 GI:4388732 from (Arabidopsis thaliana);(source:TAIR10)
AT3G32260.1	protein_coding	Nucleic acid-binding proteins superfamily		Nucleic acid-binding proteins superfamily;(source:Araport11)
AT3G32220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-59 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G32270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07310.1);(source:TAIR10)
AT3G43290.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43210.1	protein_coding	ATP binding microtubule motor family protein	Encodes a kinesin TETRASPORE. Required for cytokinesis in pollen. In mutants, all four microspore nuclei remain within the same cytoplasm after meiosis.	ATP binding microtubule motor family protein;(source:Araport11)
AT3G43300.1	protein_coding	HOPM interactor 7	AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein.  AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family.  The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells.  HopM1 mediates the destruction of AtMIN7 via the host proteasome.	HOPM interactor 7;(source:Araport11)
AT3G43220.1	protein_coding	Phosphoinositide phosphatase family protein		Phosphoinositide phosphatase family protein;(source:Araport11)
AT3G43230.1	protein_coding	RING/FYVE/PHD-type zinc finger family protein		RING/FYVE/PHD-type zinc finger family protein;(source:Araport11)
AT3G43160.1	protein_coding	maternal effect embryo arrest 38		maternal effect embryo arrest 38;(source:Araport11)
AT3G43250.1	protein_coding	Family of unknown function (DUF572) 		coiled-coil protein (DUF572);(source:Araport11)
AT3G43240.1	protein_coding	ARID/BRIGHT DNA-binding domain-containing protein		ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT3G43170.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43260.1	protein_coding			deoxyhypusine protein;(source:Araport11)
AT3G43180.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G43270.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT3G43190.1	protein_coding	sucrose synthase 4	Encodes a protein with sucrose synthase activity (SUS4).	sucrose synthase 4;(source:Araport11)
AT3G43280.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43200.1	pseudogene			pseudogene of target of trans acting-siR480/255 protein;(source:Araport11)
AT3G43130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, predicted proteins, Arabidopsis thaliana;(source:TAIR10)
AT3G43050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.0e-39 P-value blast match to Q9SUF8 /145-308 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G43140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT3G43060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G43070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G43080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.8e-60 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G43000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G43090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.4e-12 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G43100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30550.1);(source:TAIR10)
AT3G43020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, predicted proteins, Arabidopsis thaliana;(source:TAIR10)
AT3G43110.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G43120.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G43040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, includes At2g10370, At5g36050, At1g35090, At1g44860, At4g19300, At1g42400, At3g43040, At3g42500;(source:TAIR10)
AT3G04710.1	protein_coding	ankyrin repeat family protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	ankyrin repeat family protein;(source:Araport11)
AT3G04620.1	protein_coding	Alba DNA/RNA-binding protein	Target promoter of the male germline-specific transcription factor DUO1.	Alba DNA/RNA-binding protein;(source:Araport11)
AT3G04630.1	protein_coding	WVD2-like 1	Member of a small gene family  which have a KLEEK domain which may be involved in  protein- protein interactions. Over expression of WDL1 results in abnormal root development.	WVD2-like 1;(source:Araport11)
AT3G04780.1	protein_coding	Protein of unknown function (DUF1000)	Encodes a protein with little sequence identity with any other protein of known structure or function.  Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein.	PITH domain protein (DUF1000);(source:Araport11)
AT3G04550.1	protein_coding		Encodes an ancillary chaperone protein that functions in Rubisco biogenesis. RAF1 dimers function in the assembly of the large subunit of Rubisco. Co-expression of RAF1 and rbcL in tobacco cells results in increased photosynthesis and plant growth. The mRNA is cell-to-cell mobile.	rubisco accumulation factor-like protein;(source:Araport11)
AT3G04640.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT3G04650.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT3G04610.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT3G04720.1	protein_coding	pathogenesis-related 4	Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. The mRNA is cell-to-cell mobile.	pathogenesis-related 4;(source:Araport11)
AT3G04660.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G04560.1	protein_coding			nucleolar/coiled-body phosphoprotein;(source:Araport11)
AT3G04730.1	protein_coding	indoleacetic acid-induced protein 16	early auxin-induced (IAA16)	indoleacetic acid-induced protein 16;(source:Araport11)
AT3G04680.1	protein_coding	CLP-similar protein 3	Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.	CLP-similar protein 3;(source:Araport11)
AT3G04670.1	protein_coding	WRKY DNA-binding protein 39	member of WRKY Transcription Factor; Group II-d	WRKY DNA-binding protein 39;(source:Araport11)
AT3G04740.1	protein_coding	RNA polymerase II transcription mediators	encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors.Required for expression of CBF-controlled cold-responsive genes. Required for recruitment of the Mediator complex and RNA polymerase II to CBF-controlled cold-responsive genes. Required for expression of some dark-upregulated genes.	RNA polymerase II transcription mediator;(source:Araport11)
AT3G04690.1	protein_coding	Malectin/receptor-like protein kinase family protein	Receptor-like kinase required  for maintenance of pollen tube growth. Display polar localization at  the plasma membrane of the pollen tube tip.	Malectin/receptor-like protein kinase family protein;(source:Araport11)
AT3G04570.1	protein_coding	AT-hook motif nuclear-localized protein 19		AT-hook motif nuclear-localized protein 19;(source:Araport11)
AT3G04750.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G04580.1	protein_coding	Signal transduction histidine kinase, hybrid-type, ethylene sensor	Ethylene receptor, subfamily 2. Has serine kinase activity.	Signal transduction histidine kinase, hybrid-type, ethylene sensor;(source:Araport11)
AT3G04700.1	protein_coding	Protein of unknown function (DUF1685)		carboxylate clamp-TPR protein (DUF1685);(source:Araport11)
AT3G04760.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT3G04590.1	protein_coding	AT hook motif DNA-binding family protein	AHL proteins contain two conserved structural units, the AT-hook motif and DUF296 domain.	AT hook motif DNA-binding family protein;(source:Araport11)
AT3G04770.1	protein_coding	40s ribosomal protein SA B		40s ribosomal protein SA B;(source:Araport11)
AT3G04600.1	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT3G42770.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein	E3 ligase involved in phosphate homeostasis. Under low Pi stress it targets  WRKY6(AT1G62300) for degradation which in turn is a repressor of PHO1( AT3G23430 ).	F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT3G42720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 7.7e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G42730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1);(source:TAIR10)
AT3G42740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14774.1);(source:TAIR10)
AT3G42750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32394.1);(source:TAIR10)
AT3G42760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05303.1);(source:TAIR10)
AT3G09850.1	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT3G09840.1	protein_coding	cell division cycle 48	Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation. The mRNA is cell-to-cell mobile.	cell division cycle 48;(source:Araport11)
AT3G09830.1	protein_coding	Protein kinase superfamily protein	Encodes a member of subfamily VIIa of the receptor-like cytoplasmic kinases (RLCKs).  It contributes to pattern-triggered immunity in response to P. syringae.	Protein kinase superfamily protein;(source:Araport11)
AT3G09920.1	protein_coding	phosphatidyl inositol monophosphate 5 kinase		phosphatidyl inositol monophosphate 5 kinase;(source:Araport11)
AT3G09820.1	protein_coding	adenosine kinase 1	Involved in the salvage synthesis of                      adenylates and methyl recycling	adenosine kinase 1;(source:Araport11)
AT3G09910.1	protein_coding	RAB GTPase homolog C2B		RAB GTPase homolog C2B;(source:Araport11)
AT3G09900.1	protein_coding	RAB GTPase homolog E1E		RAB GTPase homolog E1E;(source:Araport11)
AT3G09890.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT3G09880.1	protein_coding	Protein phosphatase 2A regulatory B subunit family protein	Encodes B' regulatory subunit of PP2A (AtB'beta). Functions redundantly with the alpha subunit do maintain sister chromatid cohesion during meiosis.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT3G09870.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G09860.1	protein_coding			actin T1-like protein;(source:Araport11)
AT3G52840.1	protein_coding	beta-galactosidase 2		beta-galactosidase 2;(source:Araport11)
AT3G52850.1	protein_coding	vacuolar sorting receptor homolog 1	Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1).  Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles. The mRNA is cell-to-cell mobile.	vacuolar sorting receptor homolog 1;(source:Araport11)
AT3G52930.1	protein_coding	Aldolase superfamily protein		Aldolase superfamily protein;(source:Araport11)
AT3G52940.1	protein_coding	Ergosterol biosynthesis ERG4/ERG24 family	Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo.	Ergosterol biosynthesis ERG4/ERG24 family;(source:Araport11)
AT3G53030.1	protein_coding	ser/arg-rich protein kinase 4	Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism.  In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31.	ser/arg-rich protein kinase 4;(source:Araport11)
AT3G52860.1	protein_coding		Encodes a mediator subunit,, important for development and senescence.	mediator of RNA polymerase II transcription subunit-like protein;(source:Araport11)
AT3G52870.1	protein_coding	IQ calmodulin-binding motif family protein		IQ calmodulin-binding motif family protein;(source:Araport11)
AT3G52950.1	protein_coding	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein		CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein;(source:Araport11)
AT3G53040.1	protein_coding	late embryogenesis abundant protein, putative / LEA protein, putative		late embryogenesis abundant protein, putative / LEA protein;(source:Araport11)
AT3G52880.1	protein_coding	monodehydroascorbate reductase 1	Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2	monodehydroascorbate reductase 1;(source:Araport11)
AT3G52960.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT3G53050.1	protein_coding	D-galactoside/L-rhamnose binding SUEL lectin protein		D-galactoside/L-rhamnose binding SUEL lectin protein;(source:Araport11)
AT3G52890.1	protein_coding	KCBP-interacting protein kinase	KCBP-interacting protein kinase interacts specifically with the tail region of KCBP	KCBP-interacting protein kinase;(source:Araport11)
AT3G52970.1	protein_coding	cytochrome P450, family 76, subfamily G, polypeptide 1	member of CYP76G	cytochrome P450, family 76, subfamily G, polypeptide 1;(source:Araport11)
AT3G53060.1	protein_coding	SKP1-like 6		SKP1-like 6;(source:Araport11)
AT3G52900.1	protein_coding	Family of unknown function (DUF662) 		RAB6-interacting golgin (DUF662);(source:Araport11)
AT3G52980.1	protein_coding	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein		Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT3G53070.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT3G52910.1	protein_coding	growth-regulating factor 4	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.	growth-regulating factor 4;(source:Araport11)
AT3G52990.1	protein_coding	Pyruvate kinase family protein		Pyruvate kinase family protein;(source:Araport11)
AT3G52920.1	protein_coding	Family of unknown function (DUF662) 		transcriptional activator (DUF662);(source:Araport11)
AT3G53000.1	protein_coding	phloem protein 2-A15		phloem protein 2-A15;(source:Araport11)
AT3G53010.1	protein_coding	Domain of unknown function (DUF303) 		carbohydrate esterase, putative (DUF303);(source:Araport11)
AT3G53020.1	protein_coding	Ribosomal protein L24e family protein	RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT  translation through its uORFs.  Regulated by TCP20.	Ribosomal protein L24e family protein;(source:Araport11)
AT3G31970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.3e-294 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G31940.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07460.1);(source:TAIR10)
AT3G31980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1);(source:TAIR10)
AT3G31950.1	protein_coding			nucleic acid-binding/zinc ion-binding protein;(source:Araport11)
AT3G31990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07630.1);(source:TAIR10)
AT3G32000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.4e-305 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G31960.1	pseudogene		Pseudogene of AT3G31960	pseudogene of EAP30/Vps36 family protein;(source:Araport11)
AT3G32010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), similar to putative transposon protein GB:CAB80809 from (Arabidopsis thaliana);(source:TAIR10)
AT3G58400.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G58320.1	protein_coding	Ubiquitin-specific protease family C19-related protein		Ubiquitin-specific protease family C19-related protein;(source:Araport11)
AT3G58240.1	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT3G58160.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G58410.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G58330.1	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT3G58250.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G58170.1	protein_coding	BET1P/SFT1P-like protein 14A	Encodes a Bet1/Sft1-like SNARE protein which  fully suppresses the temperature-sensitive  growth defect in <i>sft1-1</i> yeast cells; however, it cannot support the deletion of the yeast BET1 gene (<i>bet1&#916;</i>).	BET1P/SFT1P-like protein 14A;(source:Araport11)
AT3G58340.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G58260.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G58350.1	protein_coding	RESTRICTED TEV MOVEMENT 3	Encodes RTM3 (Restricted Tobacco etch potyvirus Movement), a protein belonging to a protein family of 29 members which has a meprin and TRAF homology (MATH) domain in its N-terminal region and a coiled-coil (CC) domain at its C-terminal end.  There are at least three RTMs in Arabidopsis.  RTM proteins might form a multiprotein complex in the resistance mechanism to block the long distance movement of potyviruses.	RESTRICTED TEV MOVEMENT 3;(source:Araport11)
AT3G58180.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G58270.1	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain		phospholipase-like protein (PEARLI 4) with TRAF-like domain protein;(source:Araport11)
AT3G58360.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G58280.1	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain		MATH domain/coiled-coil protein;(source:Araport11)
AT3G58370.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G58380.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G58100.1	protein_coding	plasmodesmata callose-binding protein 5	Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.	plasmodesmata callose-binding protein 5;(source:Araport11)
AT3G58110.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G58190.1	protein_coding	lateral organ boundaries-domain 29	This gene contains two auxin-responsive element (AuxRE).	lateral organ boundaries-domain 29;(source:Araport11)
AT3G58120.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT3G58200.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G58290.1	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT3G58130.1	protein_coding	N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein		N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein;(source:Araport11)
AT3G58210.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G58300.1	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT3G58140.1	protein_coding	phenylalanyl-tRNA synthetase class IIc family protein		phenylalanyl-tRNA synthetase class IIc family protein;(source:Araport11)
AT3G58220.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G58390.1	protein_coding	Eukaryotic release factor 1 (eRF1) family protein	Represses the RNA the non-stop decay (NSD) and no-go decay (NGD) quality control systems that act during translation. Impairs NSD likely by sequestering the HBS1 components of the NSD complex.	Eukaryotic release factor 1 (eRF1) family protein;(source:Araport11)
AT3G58310.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory protein, putative (DUF26);(source:Araport11)
AT3G58150.1	protein_coding	Optic atrophy 3 protein (OPA3)		Optic atrophy 3 protein (OPA3);(source:Araport11)
AT3G58230.1	protein_coding	Ubiquitin-specific protease family C19-related protein		Ubiquitin-specific protease family C19-related protein;(source:Araport11)
AT3G11000.1	protein_coding	DCD (Development and Cell Death) domain protein		DCD (Development and Cell Death) domain protein;(source:Araport11)
AT3G10990.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G10980.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT3G10970.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G11030.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 32	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).The chemical evidence for function comes from xylan NMR analysis. Secondary wall thickening phenotype can be  observed only in double or triple mutant combinations with esk1.	TRICHOME BIREFRINGENCE-LIKE 32;(source:Araport11)
AT3G10960.1	protein_coding	AZA-guanine resistant1	Encodes a homolog of the adenine-guanine-hypoxanthine transporter AzgA of Aspergillus nidulans. Function as a plant adenine-guanine transporter.  Two closely related genes exist in Arabidopsis: AT3G10960 (Azg1) and AT5G50300 (Azg2).	AZA-guanine resistant1;(source:Araport11)
AT3G11020.1	protein_coding	DRE/CRT-binding protein 2B	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2B). The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A.	DRE/CRT-binding protein 2B;(source:Araport11)
AT3G10950.1	protein_coding	Zinc-binding ribosomal protein family protein		Zinc-binding ribosomal protein family protein;(source:Araport11)
AT3G11010.1	protein_coding	receptor like protein 34		receptor like protein 34;(source:Araport11)
AT3G10940.1	protein_coding	dual specificity protein phosphatase (DsPTP1) family protein	Encodes a protein with a predicted dual-specificity phosphatase domain, similar to the glucan phosphorylases SEX4 and LSF1, however, it lacks the carbohydrate binding domain present in those proteins. Has phosphoglucan phosphatase activity. It binds to starch and specifically hydrolyzes phosphate from the C3-position.	dual specificity protein phosphatase (DsPTP1) family protein;(source:Araport11)
AT3G10930.1	protein_coding		Encodes a small secreted signaling peptide that processed both N- and C-terminally after translation and is rapidly induced in response to ROS and flg22-induced stress and may act as a negative modulator of stress-induced ROS signalling.	hypothetical protein;(source:Araport11)
AT3G10920.1	protein_coding	manganese superoxide dismutase 1	manganese superoxide dismutase (MSD1)	manganese superoxide dismutase 1;(source:Araport11)
AT3G45430.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G45520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.0e-308 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G45440.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G45450.1	protein_coding	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein		Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G45530.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G45620.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G45460.1	protein_coding	IBR domain containing protein		IBR domain containing protein;(source:Araport11)
AT3G45540.1	protein_coding	RING/U-box protein with C6HC-type zinc finger		RING/U-box protein with C6HC-type zinc finger;(source:Araport11)
AT3G45630.1	protein_coding	RNA binding (RRM/RBD/RNP motifs) family protein		RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G45470.1	protein_coding	IBR domain containing protein		IBR domain containing protein;(source:Araport11)
AT3G45550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 8.1e-36 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT3G45480.1	protein_coding	RING/U-box protein with C6HC-type zinc finger		RING/U-box protein with C6HC-type zinc finger;(source:Araport11)
AT3G45560.1	protein_coding	zinc finger (C3HC4-type RING finger) family protein		zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT3G45490.1	protein_coding			reverse transcriptase-like protein;(source:Araport11)
AT3G45570.1	protein_coding	RING/U-box protein with C6HC-type zinc finger domain		RING/U-box protein with C6HC-type zinc finger domain-containing protein;(source:Araport11)
AT3G45500.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G45580.1	protein_coding	RING/U-box protein with C6HC-type zinc finger		RING/U-box protein with C6HC-type zinc finger;(source:Araport11)
AT3G45510.1	protein_coding	RING/U-box protein		RING/U-box protein;(source:Araport11)
AT3G45590.1	protein_coding	splicing endonuclease 1	Encodes a catalytic subunit of tRNA splicing endonuclease.	splicing endonuclease 1;(source:Araport11)
AT3G45600.1	protein_coding	tetraspanin3	Member of TETRASPANIN family	tetraspanin3;(source:Araport11)
AT3G45610.1	protein_coding	Dof-type zinc finger DNA-binding family protein	PEAR protein involved in the formation of a short-range concentration gradient that peaks at protophloem sieve elements, and activates gene expression that promotes radial growth. Locally promotes transcription of inhibitory HD-ZIP III genes, and thereby establishes a negative-feedback loop that forms a robust boundary that demarks the zone of cell division.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT3G20520.1	protein_coding	SHV3-like 3	Encodes a member of the glycerophosphodiester phosphodiesterase like (GDPD-like) family.	SHV3-like 3;(source:Araport11)
AT3G20590.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT3G20530.1	protein_coding	Protein kinase superfamily protein	Protein kinase superfamily protein, expressed in the peroxisome.	Protein kinase superfamily protein;(source:Araport11)
AT3G20600.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	Required for non-race specific resistance to bacterial and fungal pathogens.Mediates systemic acquired resistance (SAR) response. The mRNA is cell-to-cell mobile.	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT3G20540.1	protein_coding	polymerase gamma 1	Encodes an organellar DNA polymerase I that is also involved in double strand break repair.	polymerase gamma 1;(source:Araport11)
AT3G20610.1	protein_coding	non-race specific disease resistance protein, putative		non-race specific disease resistance protein;(source:Araport11)
AT3G20550.1	protein_coding	SMAD/FHA domain-containing protein 	Encodes a nuclear localized FHA (forhkead) domain containing protein.Mutant plants have shortened roots, delayed flowering time, altered floral organ number, defective floral organs and reduced fertility.Ddl mutants also show reduced levels of pri-miRNAs as well as mature miRNAs suggesting involvement in biogenesis of miRNAs. DDL does not affect transcription of miRNAs directly but may act through other proteins such as DCL.	SMAD/FHA domain-containing protein;(source:Araport11)
AT3G20620.1	protein_coding	F-box family protein-related		F-box family protein-like protein;(source:Araport11)
AT3G20560.1	protein_coding	PDI-like 5-3	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).	PDI-like 5-3;(source:Araport11)
AT3G20490.1	protein_coding		Involved in DNA repair.  Mutants show accumulation of DNA lesions upon genotoxic stress	Rho GTPase-activating protein;(source:Araport11)
AT3G20480.1	protein_coding	tetraacyldisaccharide 4'-kinase family protein		tetraacyldisaccharide 4-kinase family protein;(source:Araport11)
AT3G20500.1	protein_coding	purple acid phosphatase 18		purple acid phosphatase 18;(source:Araport11)
AT3G20570.1	protein_coding	early nodulin-like protein 9		early nodulin-like protein 9;(source:Araport11)
AT3G20510.1	protein_coding	Transmembrane proteins 14C	Encodes a member of the Tmemb_14 family that is predicted to be localized to the membranes of the secretory pathway. The mRNA is cell-to-cell mobile.	Transmembrane proteins 14C;(source:Araport11)
AT3G20580.1	protein_coding	COBRA-like protein 10 precursor		COBRA-like protein 10 precursor;(source:Araport11)
AT3G30810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04070.1);(source:TAIR10)
AT3G30820.1	protein_coding	Arabidopsis retrotransposon ORF-1 protein		retrotransposon ORF-1 protein;(source:Araport11)
AT3G30830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.8e-26 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G18910.1	protein_coding	EIN2 targeting protein2		EIN2 targeting protein2;(source:Araport11)
AT3G18980.1	protein_coding	EIN2 targeting protein1		EIN2 targeting protein1;(source:Araport11)
AT3G19050.1	protein_coding	phragmoplast orienting kinesin 2	PHRAGMOPLAST ORIENTING KINESIN 2 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK2 constructs were broader than those for POK1; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls.	phragmoplast orienting kinesin 2;(source:Araport11)
AT3G18990.1	protein_coding	AP2/B3-like transcriptional factor family protein	Required for vernalization. Essential for the complete repression of FLC in vernalized plants. Required for the methylation of  histone H3	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G18960.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G19000.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G18970.1	protein_coding	mitochondrial editing factor  20	Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.	mitochondrial editing factor 20;(source:Araport11)
AT3G19010.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G19070.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G19020.1	protein_coding	Leucine-rich repeat (LRR) family protein	Pollen expressed protein required for pollen tube growth. Along with other members of the LRX family, interacts with RALF4 to control pollen tube growth and integrity. Loss of function results in premature pollen tube rupture and reduced fertility.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G19080.1	protein_coding	SWIB complex BAF60b domain-containing protein		SWIB complex BAF60b domain-containing protein;(source:Araport11)
AT3G19030.1	protein_coding			transcription initiation factor TFIID subunit 1b-like protein;(source:Araport11)
AT3G19040.1	protein_coding	histone acetyltransferase of the TAFII250 family 2	Encodes a protein similar to TATA-binding protein-associated factor TAF1 (a.k.a. TAFII250) with histone acetyltransferase activity.  It is required in integrating light signals to regulate gene expression and growth.	histone acetyltransferase of the TAFII250 family 2;(source:Araport11)
AT3G18930.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G18940.1	protein_coding	clast3-related		clast3-like protein;(source:Araport11)
AT3G18950.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G24250.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT3G25710.1	protein_coding	basic helix-loop-helix 32	Encodes a basic helix-loop-helix transcription factor that  is expressed in the hypophysis-adjacent embryo cells, and is  required and partially sufficient for MP-dependent root initiation. Involved in response to phosphate starvation. Negative regulator of root hair development, anthocyanin formation  and Pi content. Its expression is responsive to both phosphate (Pi) and phosphite (Phi) in shoots.	basic helix-loop-helix 32;(source:Araport11)
AT3G25730.1	protein_coding	ethylene response DNA binding factor 3		ethylene response DNA binding factor 3;(source:Araport11)
AT3G25780.1	protein_coding	allene oxide cyclase 3	Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis.  One of four genes in Arabidopsis that encode this enzyme.  mRNA expression is upregulated in senescing leaves.  Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884. The mRNA is cell-to-cell mobile.	allene oxide cyclase 3;(source:Araport11)
AT3G25740.1	protein_coding	methionine aminopeptidase 1C	Encodes a plastid localized methionine aminopeptidase. Formerly called MAP1C, now called MAP1B.	methionine aminopeptidase 1C;(source:Araport11)
AT3G25790.1	protein_coding	myb-like transcription factor family protein	Encodes a nuclear localized member of the GARP family of transcription factors. Along with AtNIGT1/HRS1 it is involved in nitrate and phosphate signaling in the root.	myb-like transcription factor family protein;(source:Araport11)
AT3G25750.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box SKIP23-like protein (DUF295);(source:Araport11)
AT3G25800.1	protein_coding	protein phosphatase 2A  subunit A2	one of three genes encoding the protein phosphatase 2A regulatory subunit	protein phosphatase 2A subunit A2;(source:Araport11)
AT3G25760.1	protein_coding	allene oxide cyclase 1	encodes allene oxide cyclase.  One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway. The mRNA is cell-to-cell mobile.	allene oxide cyclase 1;(source:Araport11)
AT3G25810.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G25770.1	protein_coding	allene oxide cyclase 2	Encodes allene oxide cyclase.  One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway. Note: Nomenclature for Arabidopsis allene oxide cyclase 2 (AOC2, AT3G25770) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC2 (AT3G25770) is also referred to as AOC3 in He et al. 2002 Plant Physiology, 128:876-884. The mRNA is cell-to-cell mobile.	allene oxide cyclase 2;(source:Araport11)
AT3G25830.1	protein_coding	terpene synthase-like sequence-1,8-cineole	Encodes the monoterpene 1,8-cineole synthase, atTPS-Cin. This polypeptide was also shown to synthesize other monoterpenes albeit in minor quantities. The same polypeptide is encoded at two different loci, the result of gene duplication: at3g25820 and at3g25830.	terpene synthase-like sequence-1,8-cineole;(source:Araport11)
AT3G25720.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT3G16890.1	protein_coding	pentatricopeptide (PPR) domain protein 40	Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein, PPR40, which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses.  Mutations in PPR40 result in enhanced sensitivity to salt, ABA and oxidative stress, as well as reduced electron transport through Complex III (cytochrome c reductase).	pentatricopeptide (PPR) domain protein 40;(source:Araport11)
AT3G17060.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G16980.1	protein_coding	RNA polymerases M/15 Kd subunit	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265	RNA polymerases M/15 Kd subunit;(source:Araport11)
AT3G17070.1	protein_coding	Peroxidase family protein		Peroxidase family protein;(source:Araport11)
AT3G16990.1	protein_coding	Haem oxygenase-like, multi-helical		heme oxygenase-like, multi-helical;(source:Araport11)
AT3G17140.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G16900.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT3G17000.1	protein_coding	ubiquitin-conjugating enzyme 32	Group XIV ubiquitin-conjugating enzyme that functions negative regulation of drought stress.	ubiquitin-conjugating enzyme 32;(source:Araport11)
AT3G17150.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G17080.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G17010.1	protein_coding	AP2/B3-like transcriptional factor family protein	transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G16960.1	protein_coding			plant self-incompatibility protein S1 family protein;(source:Araport11)
AT3G17160.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G17090.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G17020.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G16970.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G17170.1	protein_coding	Translation elongation  factor EF1B/ribosomal protein S6 family protein		Translation elongation factor EF1B/ribosomal protein S6 family protein;(source:Araport11)
AT3G17100.1	protein_coding	sequence-specific DNA binding transcription factors		sequence-specific DNA binding transcription factor;(source:Araport11)
AT3G16910.1	protein_coding	acyl-activating enzyme 7	Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle.	acyl-activating enzyme 7;(source:Araport11)
AT3G17030.1	protein_coding	Nucleic acid-binding proteins superfamily		Nucleic acid-binding proteins superfamily;(source:Araport11)
AT3G17040.1	protein_coding	high chlorophyll fluorescent 107	It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. It binds in the psbT?psbH intercistronic region and blocks the progression of 5&#8242; &#8594; 3&#8242; exoribonucleases, which defines the 5&#8242; end of processed psbH transcripts and also stabilizes the downstream RNA segment. In addition, HCF107 binding remodels the structure of the psbH 5&#8242; UTR in a way that can account for its ability to enhance psbH translation.	high chlorophyll fluorescent 107;(source:Araport11)
AT3G17180.1	protein_coding	serine carboxypeptidase-like 33		serine carboxypeptidase-like 33;(source:Araport11)
AT3G17110.1	pseudogene		Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of glycine-rich protein;(source:Araport11)
AT3G17050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, glycine-rich protein, similar to glycine-rich protein TIGR:At1g53620.1 (Arabidopsis thaliana);(source:TAIR10)
AT3G16920.1	protein_coding	chitinase-like protein 2	Encodes a chitinase-like protein expressed predominantly in stems. Mutants accumulate ligning in etiolated hypocotyls.	chitinase-like protein;(source:Araport11)
AT3G17120.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G16930.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G17130.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G16940.1	protein_coding	calmodulin binding;transcription regulators		calmodulin-binding transcription activator;(source:Araport11)
AT3G16950.1	protein_coding	lipoamide dehydrogenase 1	encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds.	lipoamide dehydrogenase 1;(source:Araport11)
AT3G23140.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Encodes UPRIGHT ROSETTE (URO).  Overexpression of URO alters indole-3-acetic acid (IAA) homeostasis.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT3G23210.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	bHLH34 is a basic helix loop helix transcription factor. It can bind GAGA and E-box cis elements.It is induced by abiotic stressors including ABA, salt and glucose. PGR, a plasma membrane glucose responsive regulator is a target of bHLH34.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G23220.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G23150.1	protein_coding	Signal transduction histidine kinase, hybrid-type, ethylene sensor	Involved in ethylene perception in Arabidopsis The mRNA is cell-to-cell mobile.	Signal transduction histidine kinase, hybrid-type, ethylene sensor;(source:Araport11)
AT3G23230.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G23160.1	protein_coding	Protein of unknown function (DUF668)		plant/protein (DUF668);(source:Araport11)
AT3G23240.1	protein_coding	ethylene response factor 1	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. EREBP like protein that binds GCC box of ethylene regulated promoters such as basic chitinases. Constitutive expression of ERF1 phenocopies ethylene over production. Involved in ethylene signaling cascade,downstream of EIN2 and EIN3.	ethylene response factor 1;(source:Araport11)
AT3G23170.1	protein_coding		PRP is a proline/serine rich protein of unknown function. It interacts with defense related MAP kinase MPK6 and others. It's expression is induced by PAMP elicitors. May play a role in response to pathogens.	hypothetical protein;(source:Araport11)
AT3G23250.1	protein_coding	myb domain protein 15	Member of the R2R3 factor gene family.	myb domain protein 15;(source:Araport11)
AT3G23180.1	protein_coding	HR-like lesion-inducing protein-related		HR-like lesion-inducing protein-like protein;(source:Araport11)
AT3G23260.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G23190.1	protein_coding	HR-like lesion-inducing protein-related		HR-like lesion-inducing protein-like protein;(source:Araport11)
AT3G23270.1	protein_coding	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain		Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT3G23200.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT3G23280.1	protein_coding	XB3 ortholog 5 in Arabidopsis thaliana	Encodes a ubiquitin ligase that is a novel player in ethylene signaling involved in negatively regulating apical hook curvature, with alternative splicing controlling dual targeting to the nuclear and cytoplasmic compartments.	hypothetical protein;(source:Araport11)
AT3G23130.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Flower-specific gene controlling the boundary of the stamen and carpel whorls. Similar to zinc finger transcription factors.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT3G14920.1	protein_coding	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein		Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein;(source:Araport11)
AT3G15060.1	protein_coding	RAB GTPase homolog A1G		RAB GTPase homolog A1G;(source:Araport11)
AT3G14990.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes a homolog of animal DJ-1 superfamily protein.  In the A. thaliana genome, three genes encoding close homologs of human DJ-1 were identified AT3G14990 (DJ1A), AT1G53280 (DJ1B) and AT4G34020 (DJ1C).  Among the three homologs, DJ1C is essential for chloroplast development and viability.  It exhibits glyoxalase activity towards glyoxal and methylglyoxal. The mRNA is cell-to-cell mobile.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT3G14930.1	protein_coding	Uroporphyrinogen decarboxylase		Uroporphyrinogen decarboxylase;(source:Araport11)
AT3G15070.1	protein_coding	RING/U-box superfamily protein	Encodes a RING-type E3 ligase that positively regulates CIN-like TCP activity to promote leaf development by mediating the degradation of the TCP repressor TIE1.	RING/U-box superfamily protein;(source:Araport11)
AT3G15000.1	protein_coding	cobalt ion binding	Encodes RIP1 (RNA-editing factor interacting protein 1). Involved in chloroplast and mitochondrial RNA editing. The mRNA is cell-to-cell mobile.	cobalt ion binding protein;(source:Araport11)
AT3G14940.1	protein_coding	phosphoenolpyruvate carboxylase 3	Encodes a cytosolic phosphoenolpyruvate carboxylase (PEPC) that has activity when expressed in E.coli. Its mRNA is most abundantly expressed in roots and siliques. PPC3 belongs to the plant-type PEPC family. It can form an enzymatically active complex with a castor bean ortholog of PPC4, which encodes a bacterial-type PEPC. The mRNA is cell-to-cell mobile.	phosphoenolpyruvate carboxylase 3;(source:Araport11)
AT3G15080.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G15010.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G14950.1	protein_coding	tetratricopetide-repeat thioredoxin-like 2	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones. The TTL family is required for osmotic stress tolerance and male sporogenesis.	tetratricopetide-repeat thioredoxin-like 2;(source:Araport11)
AT3G15090.1	protein_coding	GroES-like zinc-binding alcohol dehydrogenase family protein		GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT3G15020.1	protein_coding	Lactate/malate dehydrogenase family protein		Lactate/malate dehydrogenase family protein;(source:Araport11)
AT3G15030.1	protein_coding	TCP family transcription factor 4	Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.	TCP family transcription factor 4;(source:Araport11)
AT3G14890.1	protein_coding	phosphoesterase	Encodes a base excision repair protein that, together with APE2, it plays overlapping roles in the maintenance of epigenome and genome stability in plants.	phosphoesterase;(source:Araport11)
AT3G14900.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G14870.1	protein_coding	Plant protein of unknown function (DUF641)		hypothetical protein (DUF641);(source:Araport11)
AT3G14960.1	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT3G15040.1	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT3G14970.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G15050.1	protein_coding	IQ-domain 10	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 10;(source:Araport11)
AT3G14910.1	protein_coding			Rab3 GTPase-activating protein non-catalytic subunit;(source:Araport11)
AT3G14980.1	protein_coding	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein	IDM1 is a histone H3 acetyltransferase that is capable of recognizing methylated DNA through its MBD domain and recognizing unmethylated histone H3K4 through its PHD domain.   It negatively regulates DNA demethylation, preventing DNA hypermethylation of highly homologous multicopy genes and other repetitive sequences.	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT3G14880.1	protein_coding			transcription factor-like protein;(source:Araport11)
AT3G27880.1	protein_coding	Protein of unknown function (DUF1645)		hypothetical protein (DUF1645);(source:Araport11)
AT3G27820.1	protein_coding	monodehydroascorbate reductase 4	Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2	monodehydroascorbate reductase 4;(source:Araport11)
AT3G27830.1	protein_coding	ribosomal protein L12-A	50S ribosomal protein L12-A The mRNA is cell-to-cell mobile.	ribosomal protein L12-A;(source:Araport11)
AT3G27840.1	protein_coding	ribosomal protein L12-B	50S ribosomal protein L12-B	ribosomal protein L12-B;(source:Araport11)
AT3G27890.1	protein_coding	NADPH:quinone oxidoreductase	Encodes NAD(P)H:quinone reductase which is an FMN binding protein that catalyzes the reduction of quinone substrates to hydroquinones.The enzyme activity was confirmed by in vitro assay.	NADPH:quinone oxidoreductase;(source:Araport11)
AT3G27850.1	protein_coding	ribosomal protein L12-C	50S ribosomal protein L12-C The mRNA is cell-to-cell mobile.	ribosomal protein L12-C;(source:Araport11)
AT3G27860.1	protein_coding	Tudor/PWWP/MBT superfamily protein		Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT3G27900.1	protein_coding	Protein of unknown function (DUF1184)		hypothetical protein (DUF1184);(source:Araport11)
AT3G27870.1	protein_coding	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein		ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT3G27910.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G27920.1	protein_coding	myb domain protein 0	Encodes GL1, a Myb-like protein that is required for induction of trichome development.  Interacts with JAZ and DELLA proteins to regulate trichome initiation.	myb domain protein 0;(source:Araport11)
AT3G27250.1	protein_coding		ABA&#8208;induced transcription repressor that acts as feedback regulator in ABA signalling.	hypothetical protein;(source:Araport11)
AT3G27310.1	protein_coding	plant UBX domain-containing protein 1	encodes a protein that contains a UBX domain and regulates AtCDC48 by inhibiting its ATPase activity and by promoting the disassembly of the active hexamer. Phenotypic analysis of pux1 plants revealed that the loss of PUX1 accelerated the growth of various plant organs including  roots and inflorescence shoots. AtCDC48 and SYP31 colocalize at the division plane during cytokinesis and to interact in vitro and in vivo.	plant UBX domain-containing protein 1;(source:Araport11)
AT3G27260.1	protein_coding	global transcription factor group E8	Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain	global transcription factor group E8;(source:Araport11)
AT3G27320.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G27270.1	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT3G27200.1	protein_coding	Cupredoxin superfamily protein		Cupredoxin superfamily protein;(source:Araport11)
AT3G27190.1	protein_coding	uridine kinase-like 2	One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 2;(source:Araport11)
AT3G27220.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G27210.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G27280.1	protein_coding	prohibitin 4	Part of protein complexes that are necessary for proficient mitochondrial function or  biogenesis, thereby supporting cell division and differentiation in apical tissues	prohibitin 4;(source:Araport11)
AT3G27230.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G27290.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G27240.1	protein_coding	Cytochrome C1 family		Cytochrome C1 family;(source:Araport11)
AT3G27300.1	protein_coding	glucose-6-phosphate dehydrogenase 5		glucose-6-phosphate dehydrogenase 5;(source:Araport11)
AT3G29782.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.6e-182 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT3G29790.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G30110.1	pseudogene			pseudogene of DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT3G29800.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G30120.1	pseudogene			pseudogene of mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT3G29810.1	protein_coding	COBRA-like protein 2 precursor	During the course of seed coat epidermal cell differentiation, COBRA-LIKE 2 plays a role in cellulose deposition into mucilage secretory cells of Arabidopsis seeds. COBRA-LIKE 2 affects mucilage solubility and cellulosic ray formation.	COBRA-like protein 2 precursor;(source:Araport11)
AT3G29820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase, blastp match of 23%25 identity and 1.1e-09 P-value to GP|13786450|gb|AAK39575.1|AC025296_10|AC025296 putative reverse transcriptase {Oryza sativa};(source:TAIR10)
AT3G29830.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G29784.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.5e-28 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT3G27400.1	protein_coding	Pectin lyase-like superfamily protein	Encodes a pectate lyase involved in response to nematodes.	Pectin lyase-like superfamily protein;(source:Araport11)
AT3G27410.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G27330.1	protein_coding	zinc finger (C3HC4-type RING finger) family protein		zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT3G27420.1	protein_coding			bromodomain testis-specific protein;(source:Araport11)
AT3G27340.1	protein_coding			Myb domain protein;(source:Araport11)
AT3G27430.1	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	Encodes 20S proteasome beta subunit PBB1 (PBB1).	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT3G27350.1	protein_coding			transcriptional regulator ATRX-like protein;(source:Araport11)
AT3G27440.1	protein_coding	uridine kinase-like 5	One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 5;(source:Araport11)
AT3G27360.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT3G27450.1	pseudogene			pseudogene of Ribosomal protein S21e;(source:Araport11)
AT3G27460.1	protein_coding	SGF29 tudor-like domain		SGF29 tudor-like domain-containing protein;(source:Araport11)
AT3G27380.1	protein_coding	succinate dehydrogenase 2-1	One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion.  Expressed during germination and post-germinative growth.	succinate dehydrogenase 2-1;(source:Araport11)
AT3G27470.1	protein_coding	Protein of unknown function (DUF707)		lysine ketoglutarate reductase trans-splicing protein (DUF707);(source:Araport11)
AT3G27390.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G16850.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G16800.1	protein_coding	Protein phosphatase 2C family protein	EGR3 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress, EGR3 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT3G16810.1	protein_coding	pumilio 24	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 24;(source:Araport11)
AT3G16820.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G16830.1	protein_coding	TOPLESS-related 2		TOPLESS-related 2;(source:Araport11)
AT3G16840.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G13610.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Encodes a Fe(II)- and 2-oxoglutarate-dependent dioxygenase family gene F6'H1. Mutations in this gene compromise iron uptake and the production of fluorescent phenolics involved in Fe uptake. The mRNA is cell-to-cell mobile.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G13620.1	protein_coding	Amino acid permease family protein	Encodes POLYAMINE UPTAKE TRANSPORTER 4, an amino acid permease family protein.	Amino acid permease family protein;(source:Araport11)
AT3G13570.1	protein_coding	SC35-like splicing factor 30A	encodes an SC35-like splicing factor of 30 kD that is localized to the nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SC35-like splicing factor 30A;(source:Araport11)
AT3G13580.1	protein_coding	Ribosomal protein L30/L7 family protein		Ribosomal protein L30/L7 family protein;(source:Araport11)
AT3G13590.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G13600.1	protein_coding	calmodulin-binding family protein		calmodulin-binding family protein;(source:Araport11)
AT3G27950.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G27960.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G27970.1	protein_coding	Exonuclease family protein		Exonuclease family protein;(source:Araport11)
AT3G27990.1	antisense_long_noncoding_rna	other RNA		None;(source:Araport11)
AT3G27980.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT3G27930.1	protein_coding		Encodes a novel plant-specific beta-barrel protein that likely plays a role in the transport of metabolites and in leaf senescence.	beta-galactosidase;(source:Araport11)
AT3G27940.1	protein_coding	LOB domain-containing protein 26		LOB domain-containing protein 26;(source:Araport11)
AT3G18570.1	protein_coding	Oleosin family protein		Oleosin family protein;(source:Araport11)
AT3G18610.1	protein_coding	nucleolin like 2	Encodes ATNUC-L2 (NUCLEOLIN LIKE 2).	nucleolin like 2;(source:Araport11)
AT3G18580.1	protein_coding	Nucleic acid-binding, OB-fold-like protein	Member of the family of canonical mitochondrial DNA binding proteins. Single-stranded binding protein which does not interfere with MMEJ.	Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT3G18620.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT3G18590.1	protein_coding	early nodulin-like protein 5		early nodulin-like protein 5;(source:Araport11)
AT3G18630.1	protein_coding	uracil dna glycosylase	Encodes a uracil-DNA glycosylase (UDG) involved in a base excision DNA repair pathway in mitochondria.	uracil dna glycosylase;(source:Araport11)
AT3G18600.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G18640.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT3G18530.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G18550.1	protein_coding	TCP family transcription factor 	Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth.	TCP family transcription factor;(source:Araport11)
AT3G18560.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G25030.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G25040.1	protein_coding	endoplasmic reticulum retention defective 2B	Encodes ERD2b. a homolog of the yeast endoplasmic reticulum retention receptor ERD2.  Mutations in ERD2b compromise EFR but not FLS2 signaling. The mRNA is cell-to-cell mobile.	endoplasmic reticulum retention defective 2B;(source:Araport11)
AT3G25050.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 3	Encodes an endotransglucosylase that cleaves the beta-1,4-glucosidic linkage in amorphous cellulose and ligates the nascent reducing end to a non-reducing terminus of either cellulosic or xyloglucan oligosaccharide. Higher expression in flowers and in response to IAA treatment.	xyloglucan endotransglucosylase/hydrolase 3;(source:Araport11)
AT3G25060.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G25010.1	protein_coding	receptor like protein 41		receptor like protein 41;(source:Araport11)
AT3G25020.1	protein_coding	receptor like protein 42		receptor like protein 42;(source:Araport11)
AT3G28930.1	protein_coding	AIG2-like (avirulence induced gene) family protein	avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2	AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT3G28990.1	protein_coding	Plant protein 1589 of unknown function		Plant protein 1589 of unknown function;(source:Araport11)
AT3G28950.1	protein_coding	AIG2-like (avirulence induced gene) family protein		AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT3G29000.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G29010.1	protein_coding	Biotin/lipoate A/B protein ligase family		Biotin/lipoate A/B protein ligase family;(source:Araport11)
AT3G28960.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT3G29020.1	protein_coding	myb domain protein 110	Encodes a putative transcription factor (MYB110).	myb domain protein 110;(source:Araport11)
AT3G28970.1	protein_coding	Domain of unknown function (DUF298)	Identified in a screen for mutants resistant to an anti-auxin. Encodes a protein with unknown function that shares homology with DCN protein family.	defective in cullin neddylation protein (DUF298);(source:Araport11)
AT3G29030.1	protein_coding	expansin A5	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A5;(source:Araport11)
AT3G28980.1	protein_coding	Protein of unknown function (DUF1216)		mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216);(source:Araport11)
AT3G28940.1	protein_coding	AIG2-like (avirulence induced gene) family protein		AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT3G15210.1	protein_coding	ethylene responsive element binding factor 4	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the  necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation. The mRNA is cell-to-cell mobile.	ethylene responsive element binding factor 4;(source:Araport11)
AT3G15300.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT3G15250.1	protein_coding			TPRXL;(source:Araport11)
AT3G15310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32621.1);(source:TAIR10)
AT3G15320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32620.1);(source:TAIR10)
AT3G15260.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G15330.1	pseudogene		pseudogene of the NLI interacting factor (NIF) protein family	pseudogene of Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G15270.1	protein_coding	squamosa promoter binding protein-like 5	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors.  Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change.  Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	squamosa promoter binding protein-like 5;(source:Araport11)
AT3G15280.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15340.1	protein_coding	proton pump interactor 2	Encodes PPI2 (proton pump interactor 2), a homologue of PPI1, a protein that interacts with the plasma membrane H+ ATPase AHA1.	proton pump interactor 2;(source:Araport11)
AT3G15290.1	protein_coding	3-hydroxyacyl-CoA dehydrogenase family protein		3-hydroxyacyl-CoA dehydrogenase family protein;(source:Araport11)
AT3G15350.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT3G15220.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G24430.1	protein_coding	ATP binding	Encodes chloroplast protein HCF101 (high chlorophyll fluorescence 101).  Serves as a chloroplast scaffold protein that specifically assembles [4Fe-4S] clusters and transfers them to the chloroplast membrane and soluble target proteins.	ATP binding protein;(source:Araport11)
AT3G24370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27800.1);(source:TAIR10)
AT3G24280.1	protein_coding	small acidic protein 2		small acidic protein 2;(source:Araport11)
AT3G24380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14774.1);(source:TAIR10)
AT3G24290.1	protein_coding	ammonium transporter 1;5		ammonium transporter 1;(source:Araport11)
AT3G24300.1	protein_coding	ammonium transporter 1;3	Encodes a plasma membrane localized ammonium transporter.	ammonium transporter 1;(source:Araport11)
AT3G24390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1);(source:TAIR10)
AT3G24310.1	protein_coding	myb domain protein 305	snapdragon myb protein 305 homolog (myb)	myb domain protein 305;(source:Araport11)
AT3G24400.1	pseudogene		Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	pseudogene of proline extensin-like receptor kinase 1;(source:Araport11)
AT3G24320.1	protein_coding	MUTL protein homolog 1	Encodes a DNA binding protein that promotes re-arrangements of mitochondrial genome. Mutations affects mitochondrial gene expression, and impairs mitochondrial function. Dual targeting of the protein to mitochondria and chloroplasts caused by alternative translation initiation. Plastid MSH1 depletion results in variegation, abiotic stress tolerance, variable growth rate, and delayed maturity.	MUTL protein homolog 1;(source:Araport11)
AT3G24330.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT3G24260.1	protein_coding			paired amphipathic helix Sin3-like protein;(source:Araport11)
AT3G24350.1	protein_coding	syntaxin of plants  32	member of Glycoside Hydrolase Family 17	syntaxin of plants 32;(source:Araport11)
AT3G24420.1	protein_coding	alpha/beta-Hydrolases superfamily protein	DLK2 is a divergent member of the DWARF14 family. It's expression is dependent on D14 and KAI2 but it does not appear to play a role in stringolactone metabolism.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G24360.1	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT3G24340.1	protein_coding	chromatin remodeling 40	Involved in gene silencing. Locus-specific regulator of 24nt-siRNA expression, works together with CLSY1-3 as the master regulators of essentially all Pol-IV-dependent 24nt-siRNAs.	chromatin remodeling 40;(source:Araport11)
AT3G24270.1	protein_coding	pumilio 25	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 25;(source:Araport11)
AT3G24810.1	protein_coding	Cyclin-dependent kinase inhibitor family protein	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.	Cyclin-dependent kinase inhibitor family protein;(source:Araport11)
AT3G24900.1	protein_coding	receptor like protein 39		receptor like protein 39;(source:Araport11)
AT3G24820.1	protein_coding	BSD domain-containing protein		BSD domain-containing protein;(source:Araport11)
AT3G24790.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G24830.1	protein_coding	Ribosomal protein L13 family protein		Ribosomal protein L13 family protein;(source:Araport11)
AT3G24730.1	protein_coding	mRNA splicing factor, thioredoxin-like U5 snRNP		mRNA splicing factor, thioredoxin-like U5 snRNP;(source:Araport11)
AT3G24800.1	protein_coding	proteolysis 1	Contains two ring finger domains and one ZZ domain. Weak similarity to yeast Rad18p. Putative component of the N-end rule pathway (ubiquitin-dependent proteolysis) that is involved in the response to pathogens.	proteolysis 1;(source:Araport11)
AT3G24850.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein (DUF313);(source:Araport11)
AT3G24860.1	protein_coding	Homeodomain-like superfamily protein	Trihelix transcription factor induced by osmotic and salt stress. Binds to a conserved AGAG-box sequence in the promoter of genes it regulates. Regulates the expression of stress tolerance genes, resulting in reduced reactive oxygen species, Na+  accumulation, stomatal apertures, lipid peroxidation, cell death and water loss rate, and increased proline content and reactive oxygen species scavenging capability.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G24840.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT3G24870.1	protein_coding	Helicase/SANT-associated, DNA binding protein		Helicase/SANT-associated, DNA binding protein;(source:Araport11)
AT3G24740.1	protein_coding	Protein of unknown function (DUF1644)		cellulose synthase, putative (DUF1644);(source:Araport11)
AT3G24880.1	protein_coding	Helicase/SANT-associated, DNA binding protein	Encodes a nuclear localized protein of unknown function that interacts with components of the NuA4 histone acetyltransferase complex. I	Helicase/SANT-associated, DNA binding protein;(source:Araport11)
AT3G24750.1	protein_coding		Encodes a member of the LAZY gene family that is expressed in the hypocotyl and the root	hypothetical protein;(source:Araport11)
AT3G24890.1	protein_coding	vesicle-associated membrane protein 728	member of VAMP72 Gene Family	vesicle-associated membrane protein 728;(source:Araport11)
AT3G24760.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G24770.1	protein_coding	CLAVATA3/ESR-RELATED 41	Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini.  The C-terminal 12 amino acid sequence of CLE41 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation.  TDIF sequence is also identical to the C-terminal 12 amino acids of CLE44 (At4g13195). The protein is expressed in the vascular system and is involved in axillary bud formation. The mRNA is cell-to-cell mobile.	CLAVATA3/ESR-RELATED 41;(source:Araport11)
AT3G24780.1	protein_coding	Uncharacterised conserved protein UCP015417,  vWA		Uncharacterized conserved protein UCP015417, vWA;(source:Araport11)
AT3G25840.1	protein_coding	Protein kinase superfamily protein	Spliceosome-associated kinase involved in alternative splicing. May influence alternative splicing patterns by phosphorylating a subset of splicing regulators.	Protein kinase superfamily protein;(source:Araport11)
AT3G25850.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G63380.1	protein_coding	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein		ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT3G63470.1	protein_coding	serine carboxypeptidase-like 40		serine carboxypeptidase-like 40;(source:Araport11)
AT3G63390.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G63480.1	protein_coding	ATP binding microtubule motor family protein	Encodes a protein with sequence similarity to rice kinesin protein. Homozygous loss of function mutations have reduced seed set due to defects in megagametogenesis and reduced pollen viability.	ATP binding microtubule motor family protein;(source:Araport11)
AT3G63400.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G63490.1	protein_coding	Ribosomal protein L1p/L10e family		Ribosomal protein L1p/L10e family;(source:Araport11)
AT3G63410.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane.  Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosynthesis. The gene product is also involved in tocopherol (vitamin E) biosynthesis.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G63420.1	protein_coding	Ggamma-subunit 1	heterotrimeric G protein gamma-subunit (AGG1) mRNA,	Ggamma-subunit 1;(source:Araport11)
AT3G63500.1	protein_coding	Protein of unknown function (DUF1423)	Encodes a PHD-finger protein that, with TTA2, is redundantly required for MP-dependent embryonic root meristem initiation.	fibronectin type III domain protein (DUF1423);(source:Araport11)
AT3G63510.1	protein_coding	FMN-linked oxidoreductases superfamily protein		FMN-linked oxidoreductases superfamily protein;(source:Araport11)
AT3G63430.1	protein_coding			zinc finger CCCH domain protein;(source:Araport11)
AT3G63520.1	protein_coding	carotenoid cleavage dioxygenase 1	Encodes a protein with 9-<i>cis</i>-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including &#946;-carotene, lutein, zeaxanthin, and all-<i>trans</i>-violaxanthin.  When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial.  The enzyme did not cleave as efficiently carotenoids containing 9-<i>cis</i>-double or allenic bonds. The mRNA is cell-to-cell mobile.	carotenoid cleavage dioxygenase 1;(source:Araport11)
AT3G63440.1	protein_coding	cytokinin oxidase/dehydrogenase 6	This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase/dehydrogenase 6;(source:Araport11)
AT3G63450.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G63460.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G14090.1	protein_coding	exocyst subunit exo70 family protein D3	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein D3;(source:Araport11)
AT3G14160.1	protein_coding	2-oxoglutarate-dependent dioxygenase family protein		2-oxoglutarate-dependent dioxygenase family protein;(source:Araport11)
AT3G14100.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G14170.1	protein_coding	Plant protein of unknown function (DUF936)	CORD1 is a member of a novel and plant specific family of microtubule associated proteins. CORD1 binds microtubules via a conserved protein domain shared among family members. CORD functions may overlap;cord1 / cord2 mutants have defects in secondary cell wall pit morphology.	hypothetical protein (DUF936);(source:Araport11)
AT3G14110.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis.  Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G14180.1	protein_coding	sequence-specific DNA binding transcription factors		sequence-specific DNA binding transcription factor;(source:Araport11)
AT3G14120.1	protein_coding			nuclear pore complex protein;(source:Araport11)
AT3G14190.1	protein_coding		Encodes a 193 amino acid protein of unknown function. Contains a DEN-box (aa 14?16), a KEN-box, and the D-box (aa 46?54)and a third,  unknown domain (aa 81?97). Loss of function alleles are defective in meiosis and have reduced fertility. pans1 mutants show premature loss of cohesion of sister chromatids during meioisis I and meiosis II resulting in abnormal chromosome segregation and unbalanced tetrads.	hypothetical protein;(source:Araport11)
AT3G14130.1	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G14200.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G14140.1	protein_coding	2-oxoglutarate-dependent dioxygenase family protein		2-oxoglutarate-dependent dioxygenase family protein;(source:Araport11)
AT3G14210.1	protein_coding	epithiospecifier modifier 1	A semidominant QTL which has an epistatic effect on the Epithiospecifier gene. Represses nitrile formation and favors isothiocyanate production during glucosinolate hydrolysis. The functional allele deters the insect herbivory T. ni.	GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT3G14070.1	protein_coding	cation exchanger 9	Involved in cation (K, Na and Mn) homeostasis and transport	cation exchanger 9;(source:Araport11)
AT3G14067.1	protein_coding	Subtilase family protein	Encodes a protein with similarity to serine protease, subtilisin, that is upregulated during senescence and expressed in the arial portions of the plant.Loss of function mutations have increased branch number but normal silique length and seed set and therefore have increased fertility.	Subtilase family protein;(source:Araport11)
AT3G14150.1	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G14080.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT3G20230.1	protein_coding	Ribosomal L18p/L5e family protein		Ribosomal L18p/L5e family protein;(source:Araport11)
AT3G20020.1	protein_coding	protein arginine methyltransferase 6		protein arginine methyltransferase 6;(source:Araport11)
AT3G20240.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT3G20160.1	protein_coding	Terpenoid synthases superfamily protein		Terpenoid synthases superfamily protein;(source:Araport11)
AT3G20090.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 18		cytochrome P450, family 705, subfamily A, polypeptide 18;(source:Araport11)
AT3G20250.1	protein_coding	pumilio 5	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. APUM5 is involved in susceptibility to CMV and is not required for bacterial or fungal pathogen resistance although its expression is induced upon bacterial and fungal infection. It is involved in the osmotic, salt, and drought stress responses.	pumilio 5;(source:Araport11)
AT3G20170.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G20100.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 19	member of CYP705A The mRNA is cell-to-cell mobile.	cytochrome P450, family 705, subfamily A, polypeptide 19;(source:Araport11)
AT3G20030.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G20180.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT3G20110.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 20	member of CYP705A	cytochrome P450, family 705, subfamily A, polypeptide 20;(source:Araport11)
AT3G20040.1	protein_coding	Hexokinase		Hexokinase;(source:Araport11)
AT3G20190.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G20120.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 21		cytochrome P450, family 705, subfamily A, polypeptide 21;(source:Araport11)
AT3G20050.1	protein_coding	T-complex protein 1 alpha subunit	Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1).	T-complex protein 1 alpha subunit;(source:Araport11)
AT3G20200.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT3G20130.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 22	Encodes a member of the CYP705A family of cytochrome P450 enzymes. Mutants show altered gravitropic responses.	cytochrome P450, family 705, subfamily A, polypeptide 22;(source:Araport11)
AT3G20060.1	protein_coding	ubiquitin-conjugating enzyme19	Encodes one of two ubiquitin-conjugating enzymes  belonging to the E2-C gene family (the other being UBC19). Transcript is always found in dividing cells, but also in other non-dividing cells. Protein is localized to the cytoplasm as well as to the nucleus.	ubiquitin-conjugating enzyme19;(source:Araport11)
AT3G20210.1	protein_coding	delta vacuolar processing enzyme	Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds.  Mutants display abnormal seed coat development.  It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.	delta vacuolar processing enzyme;(source:Araport11)
AT3G20070.1	protein_coding	titan9	Encodes a plant-specific protein of unknown function.  Mutant embryos contain at most four small cells.  The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information.	titan9;(source:Araport11)
AT3G20220.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G20080.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 15		cytochrome P450, family 705, subfamily A, polypeptide 15;(source:Araport11)
AT3G20140.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 23	member of CYP705A	cytochrome P450, family 705, subfamily A, polypeptide 23;(source:Araport11)
AT3G20150.1	protein_coding	Kinesin motor family protein		Kinesin motor family protein;(source:Araport11)
AT3G18020.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G18030.1	protein_coding	HAL3-like protein A	flavin mononucleotide flavoprotein involved in salt and osmotic tolerance  HAL3A encodes for phosphopantothenoylcysteine decarboxylase being involved in Coenzyme A biosynthesis.  HAL3A is predominant over another gene with the presumably same function (HAL3B).	HAL3-like protein A;(source:Araport11)
AT3G12820.1	protein_coding	myb domain protein 10	Member of the R2R3 factor gene family.	myb domain protein 10;(source:Araport11)
AT3G12740.1	protein_coding	ALA-interacting subunit 1	Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3. The mRNA is cell-to-cell mobile.	ALA-interacting subunit 1;(source:Araport11)
AT3G12830.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G12750.1	protein_coding	zinc transporter 1 precursor	A member of Zrt- and Irt-related protein (ZIP) family.  transcript is induced in response to zinc deficiency in the root.	zinc transporter 1 precursor;(source:Araport11)
AT3G12710.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT3G12760.1	protein_coding			defective in cullin neddylation protein;(source:Araport11)
AT3G12720.1	protein_coding	myb domain protein 67	Member of the R2R3 factor gene family.	myb domain protein 67;(source:Araport11)
AT3G12840.1	protein_coding			F-box/FBD-like domain protein;(source:Araport11)
AT3G12770.1	protein_coding	mitochondrial editing factor  22	Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.	mitochondrial editing factor 22;(source:Araport11)
AT3G12730.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G12850.1	protein_coding	COP9 signalosome complex-related / CSN complex-related		COP9 signalosome complex-related / CSN complex-like protein;(source:Araport11)
AT3G12780.1	protein_coding	phosphoglycerate kinase 1	PGK1 was localized exclusively in the chloroplasts of photosynthetic tissues and is the photosynthetic isoform. The pgk1.1 knock-down mutant displayed reduced growth, lower photosynthetic capacity and starch content. Expression studies in PGK mutants showed that PGK1 and PGK3 were down-regulated in pgk3.2 and pgk1.1, respectively. These results indicate that the down-regulation of photosynthetic activity could be a plant strategy when glycolysis is impaired to achieve metabolic adjustment and optimize growth (DOI:10.1104/pp.17.01227).Functions redundantly with AT1G56190 in the chloroplast in the biosynthesis of thylakoid membrane galactolipids. Double mutants are photosynthetically incompetent, plants are albino and seedling lethal	phosphoglycerate kinase 1;(source:Araport11)
AT3G12860.1	protein_coding	NOP56-like pre RNA processing ribonucleoprotein		NOP56-like pre RNA processing ribonucleoprotein;(source:Araport11)
AT3G12800.1	protein_coding	short-chain dehydrogenase-reductase B		short-chain dehydrogenase-reductase B;(source:Araport11)
AT3G12810.1	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein	Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6). The mRNA is cell-to-cell mobile.	SNF2 domain-containing protein / helicase domain-containing protein;(source:Araport11)
AT3G12690.1	protein_coding	AGC kinase 1.5	Encodes a putative serine/threonine kinase It is expressed specifically in pollen and appears to function redundantly with AGC1.7 to regulate polarized growth of pollen tubes.	AGC kinase 1.5;(source:Araport11)
AT3G12700.1	protein_coding	Eukaryotic aspartyl protease family protein	Encodes an aspartic protease has an important regulatory function in chloroplasts that not only influences photosynthetic carbon metabolism but   also plastid and nuclear gene expression.	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G22370.1	protein_coding	alternative oxidase 1A	Encodes AOX1a, an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations.  It is regulated through transcriptional control and by pyruvate.  Plays a role in shoot acclimation to low temperature.  Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited.  AOX1a also functions as a marker for mitochondrial retrograde response. The mRNA is cell-to-cell mobile.	alternative oxidase 1A;(source:Araport11)
AT3G22290.1	protein_coding	Endoplasmic reticulum vesicle transporter protein		Endoplasmic reticulum vesicle transporter protein;(source:Araport11)
AT3G22300.1	protein_coding	ribosomal protein S10	Nuclear-encoded gene for mitochondrial ribosomal small subunit protein S10	ribosomal protein S10;(source:Araport11)
AT3G22310.1	protein_coding	putative mitochondrial RNA helicase 1	Sequence similarity ot DEAD-box RNA helicases. Binds RNA and DNA. Involved in drought, salt and cold stress responses. The mRNA is cell-to-cell mobile.	putative mitochondrial RNA helicase 1;(source:Araport11)
AT3G22400.1	protein_coding	PLAT/LH2 domain-containing lipoxygenase family protein	Encodes lipoxygenase5 (LOX5). LOX5 activity in roots facilitates green peach aphid colonization of Arabidopsis foliage by promoting green peach aphid feeding from sieve element and water consumption from xylem.	PLAT/LH2 domain-containing lipoxygenase family protein;(source:Araport11)
AT3G22320.1	protein_coding	Eukaryotic rpb5 RNA polymerase subunit family protein	Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.	Eukaryotic rpb5 RNA polymerase subunit family protein;(source:Araport11)
AT3G22410.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT3G22330.1	protein_coding	putative mitochondrial RNA helicase 2	DEAD-box protein required for efficient group II  intron splicing in mitochondria.	putative mitochondrial RNA helicase 2;(source:Araport11)
AT3G22420.1	protein_coding	with no lysine (K) kinase 2	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.  Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 2;(source:Araport11)
AT3G22340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.2e-60 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G22430.1	protein_coding			RNA recognition motif XS domain protein;(source:Araport11)
AT3G22440.1	protein_coding	FRIGIDA-like protein		FRIGIDA-like protein;(source:Araport11)
AT3G22350.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G22360.1	protein_coding	alternative oxidase 1B	encodes an alternative oxidase whose expression is limited to flowers and floral buds.	alternative oxidase 1B;(source:Araport11)
AT3G18880.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT3G18890.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G18900.1	protein_coding			ternary complex factor MIP1 leucine-zipper protein;(source:Araport11)
AT3G18850.1	protein_coding	lysophosphatidyl acyltransferase 5		lysophosphatidyl acyltransferase 5;(source:Araport11)
AT3G18860.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G18870.1	protein_coding	Mitochondrial transcription termination factor family protein	Mitochondrial transcription termination factor family member.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT3G17190.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G17200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1);(source:TAIR10)
AT3G13860.1	protein_coding	heat shock protein 60-3A		heat shock protein 60-3A;(source:Araport11)
AT3G13870.1	protein_coding	Root hair defective 3 GTP-binding protein (RHD3)	required for regulated cell expansion and normal root hair development. Encodes an evolutionarily conserved protein with putative GTP-binding motifs that is implicated in the control of vesicle trafficking between the endoplasmic reticulum and the Golgi compartments.	Root hair defective 3 GTP-binding protein (RHD3);(source:Araport11)
AT3G13880.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a pentatricopeptide repeat (PPR) protein involved in RNA editing in mitochondria.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G13800.1	protein_coding	Metallo-hydrolase/oxidoreductase superfamily protein		Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT3G13810.1	protein_coding	indeterminate(ID)-domain 11		indeterminate(ID)-domain 11;(source:Araport11)
AT3G13820.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G13830.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G13840.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT3G13850.1	protein_coding	LOB domain-containing protein 22		LOB domain-containing protein 22;(source:Araport11)
AT3G23550.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT3G23620.1	protein_coding	Ribosomal RNA processing Brix domain protein	BRIX domain containing protein, similar to RNA biogenesis factors in yeast. Binds rRNA and likely also functions in RNA biogenesis in Arabidopsis. Essential gene, mutants are embryo lethal and does not transmit well through the gametophyte.	Ribosomal RNA processing Brix domain protein;(source:Araport11)
AT3G23560.1	protein_coding	MATE efflux family protein	Member of the multidrug and toxic compound extrusion (MATE) family, protects roots from inhibitory compounds.	MATE efflux family protein;(source:Araport11)
AT3G23630.1	protein_coding	isopentenyltransferase 7	Encodes an isopentenyl transferase involved in cytokinin biosynthesis.	isopentenyltransferase 7;(source:Araport11)
AT3G23570.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G23640.1	protein_coding	heteroglycan glucosidase 1		heteroglycan glucosidase 1;(source:Araport11)
AT3G23580.1	protein_coding	ribonucleotide reductase 2A	Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes (RNR2A). Functionally redundant with the ribonucleotide reductase TSO2. mRNA was shown to specifically accumulate during the S-phase  of the cell cycle in synchronized tobacco BY2 cells. Critical for cell cycle progression, DNA damage repair and plant development.	ribonucleotide reductase 2A;(source:Araport11)
AT3G23650.1	protein_coding	protein kinase-related		kinase-like protein;(source:Araport11)
AT3G23590.1	protein_coding	REF4-related 1	Encodes a protein shown to physically associate with the conserved transcriptional coregulatory complex, Mediator, and is involved in the regulation of phenylpropanoid homeostasis. Acts redundantly with REF4/MED5b (At2g48110). Required for expression of some dark-upregulated genes. RFR1 is the MED5a subunit of the mediator complex.	REF4-related 1;(source:Araport11)
AT3G23660.1	protein_coding	Sec23/Sec24 protein transport family protein		Sec23/Sec24 protein transport family protein;(source:Araport11)
AT3G23600.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G23670.1	protein_coding	phragmoplast-associated kinesin-related protein, putative	Microtubule motor kinesin PAKRP1L/Kinesin-12B. Together with PAKRP1/Kinesin-12A, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast.	phragmoplast-associated kinesin-related protein;(source:Araport11)
AT3G23530.1	protein_coding	Cyclopropane-fatty-acyl-phospholipid synthase		Cyclopropane-fatty-acyl-phospholipid synthase;(source:Araport11)
AT3G23610.1	protein_coding	dual specificity protein phosphatase 1	Encodes a dual specificity protein phosphatase whose activity is modulated by CaM binding.	dual specificity protein phosphatase 1;(source:Araport11)
AT3G23540.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G13310.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G13370.1	protein_coding			formin-like protein;(source:Araport11)
AT3G13240.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G13250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT1G35940.1);(source:TAIR10)
AT3G13230.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT3G13260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G35260.1);(source:TAIR10)
AT3G13320.1	protein_coding	cation exchanger 2	low affinity calcium antiporter CAX2 The mRNA is cell-to-cell mobile.	cation exchanger 2;(source:Araport11)
AT3G13270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14450.1);(source:TAIR10)
AT3G13330.1	protein_coding	proteasome activating protein 200	Encodes a protein that interacts with the 26S proteasome.  Mutants are phenotypically indistinguishable from wild type plants under a variety of growth conditions.  Protein levels increase upon exposure of seedlings to MG132, a specific, potent, reversible, and cell-permeable proteasome inhibitor.	proteasome activating protein 200;(source:Araport11)
AT3G13280.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G13340.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G13290.1	protein_coding	varicose-related		varicose-like protein;(source:Araport11)
AT3G13350.1	protein_coding	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain		HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT3G13300.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes VCS (VARICOSE).   Involved in mRNA decapping.  VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570).  Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro.  DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies.  Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology.  VCS is also required for leaf development.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G13360.1	protein_coding	WPP domain interacting protein 3	Encodes an outer nuclear membrane protein that anchors RanGAP1 to the nuclear envelope.  It interacts with SUN proteins and is required for maintaining the elongated nuclear shape of epidermal cells.	WPP domain interacting protein 3;(source:Araport11)
AT3G13970.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT3G13890.1	protein_coding	myb domain protein 26	Encodes a putative transcription factor (MYB26).  Mutants produces fertile pollen but plants are sterile because anthers do not dehisce. The cellulosic secondary wall thickenings are not formed in the endothecium as they are in non-mutant plants.	myb domain protein 26;(source:Araport11)
AT3G13980.1	protein_coding			SKI/DACH domain protein;(source:Araport11)
AT3G14060.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G13990.1	protein_coding	Kinase-related protein of unknown function (DUF1296)		dentin sialophosphoprotein, putative (DUF1296);(source:Araport11)
AT3G14000.1	protein_coding	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein;(source:Araport11)
AT3G13900.1	protein_coding	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein	Encodes a member of the P4 subfamily of P-type ATPases expressed in the pollen plasma membrane.  Double mutants with ALA6 display pollen and pollen tube defects.	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT3G14010.1	protein_coding	CTC-interacting domain 4	hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2.	CTC-interacting domain 4;(source:Araport11)
AT3G13910.1	protein_coding	Protein of unknown function (DUF3511)		hypothetical protein (DUF3511);(source:Araport11)
AT3G14020.1	protein_coding	nuclear factor Y, subunit A6		nuclear factor Y, subunit A6;(source:Araport11)
AT3G13920.1	protein_coding	eukaryotic translation initiation factor 4A1	eukaryotic translation initiation factor 4A-1	eukaryotic translation initiation factor 4A1;(source:Araport11)
AT3G14030.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G13930.1	protein_coding	Dihydrolipoamide acetyltransferase, long form protein	Encodes a subunit of the mitochondrial pyruvate dehydrogenase complex.	Dihydrolipoamide acetyltransferase, long form protein;(source:Araport11)
AT3G14040.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G13940.1	protein_coding	DNA binding;DNA-directed RNA polymerases		DNA binding / DNA-directed RNA polymerase;(source:Araport11)
AT3G14050.1	protein_coding	RELA/SPOT homolog 2		RELA/SPOT homolog 2;(source:Araport11)
AT3G13950.1	protein_coding			ankyrin;(source:Araport11)
AT3G13960.1	protein_coding	growth-regulating factor 5	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.	growth-regulating factor 5;(source:Araport11)
AT3G16550.1	protein_coding	DEGP protease 12	Encodes a putative DegP protease.	protease Do-like protein;(source:Araport11)
AT3G16490.1	protein_coding	IQ-domain 26	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 26;(source:Araport11)
AT3G16500.1	protein_coding	phytochrome-associated protein 1	phytochrome-associated protein 1 (PAP1)	phytochrome-associated protein 1;(source:Araport11)
AT3G16510.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G16520.1	protein_coding	UDP-glucosyl transferase 88A1		UDP-glucosyl transferase 88A1;(source:Araport11)
AT3G16530.1	protein_coding	Legume lectin family protein	Lectin like protein whose expression is induced upon treatment with chitin oligomers.	Legume lectin family protein;(source:Araport11)
AT3G16540.1	protein_coding	DegP protease 11	Encodes a putative DegP protease.	DegP protease 11;(source:Araport11)
AT3G26910.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G26830.1	protein_coding	Cytochrome P450 superfamily protein	Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. The mRNA is cell-to-cell mobile.	Cytochrome P450 superfamily protein;(source:Araport11)
AT3G26770.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G26840.1	protein_coding	Esterase/lipase/thioesterase family protein	Encodes a protein with phytyl ester synthesis and diacylglycerol acyltransferase activities that is involved in the deposition of free phytol and free fatty acids in the form of phytyl esters in chloroplasts, a process involved in maintaining the integrity of the photosynthetic membrane during abiotic stress and senescence.	Esterase/lipase/thioesterase family protein;(source:Araport11)
AT3G26750.1	protein_coding			HECT-like ubiquitin-conjugating enzyme (E2)-binding protein;(source:Araport11)
AT3G26850.1	protein_coding	histone-lysine N-methyltransferases		histone-lysine N-methyltransferase;(source:Araport11)
AT3G26760.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G26860.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G26780.1	protein_coding	Phosphoglycerate mutase family protein	Encodes MEF14 (mitochondrial editing factor 14), a PPR (pentatricopeptide repeat proteins) protein required for RNA editing at site matR-1895 in mitochondria. The mRNA is cell-to-cell mobile.	Phosphoglycerate mutase family protein;(source:Araport11)
AT3G26870.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G26790.1	protein_coding	AP2/B3-like transcriptional factor family protein	Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin.  FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G26880.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G26800.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G26890.1	protein_coding			meiosis chromosome segregation family protein;(source:Araport11)
AT3G26810.1	protein_coding	auxin signaling F-box 2	Auxin F box protein, the dominant auxin receptor in roots.	auxin signaling F-box 2;(source:Araport11)
AT3G26900.1	protein_coding	shikimate kinase like 1	Encodes a protein with some sequence similarity to shikimate kinases, but a truncated form of this protein (lacking a putative N-terminal chloroplast transit peptide) does not have shikimate kinase activity in vitro. skl1-3 mutants have a variegated phenotype and skl1-8 mutants have an albino phenotype consistent with the observation of chloroplast defects in these mutants.	shikimate kinase like 1;(source:Araport11)
AT3G26820.1	protein_coding	Esterase/lipase/thioesterase family protein		Esterase/lipase/thioesterase family protein;(source:Araport11)
AT3G17800.1	protein_coding	Protein of unknown function (DUF760)	mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem	alanine-tRNA ligase, putative (DUF760);(source:Araport11)
AT3G17900.1	protein_coding			unknown protein;(source:TAIR10)
AT3G17840.1	protein_coding	receptor-like kinase 902	Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown.	receptor-like kinase 902;(source:Araport11)
AT3G17980.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G17910.1	protein_coding	Surfeit locus 1 cytochrome c oxidase biogenesis protein	Surfeit 1 (SURF1) mRNA. Similar to human SURF1 which is known to be involved in cytochrome c oxidase assembly.	Surfeit locus 1 cytochrome c oxidase biogenesis protein;(source:Araport11)
AT3G17850.1	protein_coding	Protein kinase superfamily protein	Protein kinase which together with IRE3 plays an important role in controlling root skewing and maintaining the microtubule network.	Protein kinase superfamily protein;(source:Araport11)
AT3G17920.1	protein_coding	Outer arm dynein light chain 1 protein		Outer arm dynein light chain 1 protein;(source:Araport11)
AT3G17860.1	protein_coding	jasmonate-zim-domain protein 3	JAZs are direct targets of the SCFCOI1 E3 ubiquitin-ligase and JA treatment  induces their proteasome-mediated degradation. Furthermore, JAI3 negatively  regulates the key transcriptional activator of JA responses, AtMYC2. The C-terminal portion of JAZ3, including the Jas domain, appears to be important for JAZ3-COI1 binding in the presence of coronatine.	jasmonate-zim-domain protein 3;(source:Araport11)
AT3G18000.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a N-methyltransferase-like protein. Double mutants of NMT1 and NMT3 are defective in leaf, root, flower, seed, and pollen development.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G17930.1	protein_coding		Encodes a thylakoid membrane protein involved in the accumulation of the cytochrome b6/f complex.	transmembrane protein;(source:Araport11)
AT3G18010.1	protein_coding	WUSCHEL related homeobox 1	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.  Its mRNA is expressed in the initiating vascular primordium of the cotyledons during  heart and torpedo stages.	WUSCHEL related homeobox 1;(source:Araport11)
AT3G17940.1	protein_coding	Galactose mutarotase-like superfamily protein		Galactose mutarotase-like superfamily protein;(source:Araport11)
AT3G17880.1	protein_coding	tetraticopeptide domain-containing thioredoxin	Encodes a thioredoxin-like disulfide reductase.  The protein interacts with the yeast Hsp70 protein Ssb2 in vitro.  This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX.	tetraticopeptide domain-containing thioredoxin;(source:Araport11)
AT3G17950.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G17810.1	protein_coding	pyrimidine 1	Encodes a protein predicted to have dihydropyrimidine dehydrogenase activity. Its activity has not been demonstrated in vivo, but, it is required for efficient uracil catabolism in Arabidopsis. It localizes to the plastid.	pyrimidine 1;(source:Araport11)
AT3G17820.1	protein_coding	glutamine synthetase 1.3	encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammonium The mRNA is cell-to-cell mobile.	glutamine synthetase 1.3;(source:Araport11)
AT3G17830.1	protein_coding	Molecular chaperone Hsp40/DnaJ family protein		Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT3G17790.1	protein_coding	purple acid phosphatase 17	Expression is upregulated in the shoot of cax1/cax3 mutant and is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.	purple acid phosphatase 17;(source:Araport11)
AT3G17890.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G17970.1	protein_coding	translocon at the outer membrane of chloroplasts 64-III	Integral chloroplast outer membrane protein. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	translocon at the outer membrane of chloroplasts 64-III;(source:Araport11)
AT3G12070.1	protein_coding	RAB geranylgeranyl transferase beta subunit 2		RAB geranylgeranyl transferase beta subunit 2;(source:Araport11)
AT3G11964.1	protein_coding	RNA binding;RNA binding	Encodes a nucleolar protein that is a ribosome biogenesis co-factor. Mutants display aberrant RNA processing and female gametophyte development.	RIBOSOMAL RNA PROCESSING 5;(source:Araport11)
AT3G30660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G31753.1);(source:TAIR10)
AT3G30690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30700.1);(source:TAIR10)
AT3G30700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30690.1);(source:TAIR10)
AT3G30670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40125.1);(source:TAIR10)
AT3G30680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.3e-152 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT3G23510.1	protein_coding	Cyclopropane-fatty-acyl-phospholipid synthase		Cyclopropane-fatty-acyl-phospholipid synthase;(source:Araport11)
AT3G23470.1	protein_coding	Cyclopropane-fatty-acyl-phospholipid synthase		Cyclopropane-fatty-acyl-phospholipid synthase;(source:Araport11)
AT3G23480.1	protein_coding	Cyclopropane-fatty-acyl-phospholipid synthase		Cyclopropane-fatty-acyl-phospholipid synthase;(source:Araport11)
AT3G23490.1	protein_coding	cyanase	Encodes a cyanase that catalyzes the bicarbonate-dependent breakdown of cyanate to ammonia and bicarbonate. CYN forms a hexadecamer and is believed to be a cytosolic protein. Long-term exposure to NaCl increases CYN transcript levels. It is also expressed at higher levels in flowers relative to stems, roots, and seedlings.	cyanase;(source:Araport11)
AT3G21870.1	protein_coding	cyclin p2;1		cyclin p2;(source:Araport11)
AT3G21880.1	protein_coding	B-box type zinc finger protein with CCT domain	Encodes a substrate of the COP1/SPA E3 ubiquitin ligase. It is degraded in darkness and stabilized by white, red and blue light. Overexpression results in decreased apical dominance, increased branching and delayed flowering in long days. The latter phenotype is due to reduced levels of FT and dependent on the presence of CO (PMID:29187570).	B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT3G20930.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a unique protein that is both a member of the RIP (RNA-editing interacting protein) family and the RNA recognition motif (RRM)-containing family. It controls the editing extent of 62% of the plastid Cs targeted for editing in Arabidopsis.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G20940.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 30	a member of A-type cytochrome P450	cytochrome P450, family 705, subfamily A, polypeptide 30;(source:Araport11)
AT3G20950.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 32	member of CYP705A	cytochrome P450, family 705, subfamily A, polypeptide 32;(source:Araport11)
AT3G20960.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 33		cytochrome P450, family 705, subfamily A, polypeptide 33;(source:Araport11)
AT3G20900.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G20970.1	protein_coding	NFU domain protein 4	Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU5 than to NFU1,2, and 3. Targeted to the mitochondrion.	NFU domain protein 4;(source:Araport11)
AT3G20910.1	protein_coding	nuclear factor Y, subunit A9		nuclear factor Y, subunit A9;(source:Araport11)
AT3G20920.1	protein_coding	translocation protein-related	Encodes an endoplasmic reticulum localized protein with similarity to yeast Sec62p. Mutants display growth defects and significantly reduced fertility. AtSec62 does not complement the thermosensitive phenotype of yeast Sec62 mutants.	translocation protein-like protein;(source:Araport11)
AT3G26500.1	protein_coding	plant intracellular ras group-related LRR 2	Encodes PIRL2, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.	plant intracellular ras group-related LRR 2;(source:Araport11)
AT3G26580.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G26530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1);(source:TAIR10)
AT3G26590.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT3G26540.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	RGFR3 is a leucine-­rich repeat receptor kinase that, together with RGFR1 and RGFR2, binds ROOT GROWTH FACTORS and is required for establishing the gradient of PLETHORA1 and PLETHORA2 essential for proper root growth and development.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G26600.1	protein_coding	armadillo repeat only 4	Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules.	armadillo repeat only 4;(source:Araport11)
AT3G26550.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G26610.1	protein_coding	Pectin lyase-like superfamily protein	Encodes an apoplast-localized polygalacturonase involved in cell elongation and flower development.	Pectin lyase-like superfamily protein;(source:Araport11)
AT3G26560.1	protein_coding	ATP-dependent RNA helicase, putative		ATP-dependent RNA helicase;(source:Araport11)
AT3G26570.1	protein_coding	phosphate transporter 2;1	low affinity phosphate transporter	phosphate transporter 2;(source:Araport11)
AT3G26510.1	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT3G26520.1	protein_coding	tonoplast intrinsic protein 2	gamma tonoplast intrinsic protein 2 (TIP2). expressed throughout the plant and transcript level is increased upon NaCl or ABA treatments. NaCl stress-sensitive yeast mutant strains exhibit more resistance to salt when expressing this protein.	tonoplast intrinsic protein 2;(source:Araport11)
AT3G28410.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G28480.1	protein_coding	Oxoglutarate/iron-dependent oxygenase		Oxoglutarate/iron-dependent oxygenase;(source:Araport11)
AT3G28490.1	protein_coding	Oxoglutarate/iron-dependent oxygenase		Oxoglutarate/iron-dependent oxygenase;(source:Araport11)
AT3G28350.1	pseudogene		Pseudogene of AT3G28350; unknown protein	pseudogene of spindle assembly checkpoint component;(source:Araport11)
AT3G28420.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT3G28360.1	protein_coding	P-glycoprotein 16		P-glycoprotein 16;(source:Araport11)
AT3G28430.1	protein_coding		Encodes a peripheral membrane protein localized at the Golgi apparatus that is involved in membrane trafficking, vacuole development and in flavonoid accumulation in the seed coat. Mutant seed color is pale brown.	CLEC16A-like protein;(source:Araport11)
AT3G28370.1	protein_coding			spindle assembly checkpoint component;(source:Araport11)
AT3G28380.1	protein_coding	P-glycoprotein 17		P-glycoprotein 17;(source:Araport11)
AT3G28450.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G28390.1	protein_coding	P-glycoprotein 18		P-glycoprotein 18;(source:Araport11)
AT3G28460.1	protein_coding	methyltransferases		methyltransferase;(source:Araport11)
AT3G28400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 4.6e-39 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT3G28470.1	protein_coding	Duplicated homeodomain-like superfamily protein	Member of the R2R3 factor gene family.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT3G17270.1	protein_coding	F-box family protein		F-box/associated interaction domain protein;(source:Araport11)
AT3G17400.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G17320.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G17280.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G17410.1	protein_coding	Protein kinase superfamily protein	Positively regulates ABA-mediated physiological responses via phosphorylation on RCAR3/ RCAR11.	Protein kinase superfamily protein;(source:Araport11)
AT3G17330.1	protein_coding	evolutionarily conserved C-terminal region 6		evolutionarily conserved C-terminal region 6;(source:Araport11)
AT3G17360.1	protein_coding	phragmoplast orienting kinesin 1	PHRAGMOPLAST ORIENTING KINESIN 1 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK1 constructs were more limited than those for POK2; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls.	phragmoplast orienting kinesin 1;(source:Araport11)
AT3G17340.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G17220.1	protein_coding	pectin methylesterase inhibitor 2	Pectin methylesterase inhibitor AtPMEI2. Inactivates AtPPME1 in vitro. Localized to Brefeldin A-induced compartments, and was found in FYVE-induced endosomal  aggregates.	pectin methylesterase inhibitor 2;(source:Araport11)
AT3G17350.1	protein_coding			wall-associated receptor kinase carboxy-terminal protein;(source:Araport11)
AT3G17230.1	protein_coding	invertase/pectin methylesterase inhibitor family protein		plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G17370.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G17240.1	protein_coding	lipoamide dehydrogenase 2	lipoamide dehydrogenase precursor	lipoamide dehydrogenase 2;(source:Araport11)
AT3G17250.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G17380.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G17290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 3.1e-27 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT3G17210.1	protein_coding	heat stable protein 1	Encodes a heat stable protein with antimicrobial and antifungal activity.	heat stable protein 1;(source:Araport11)
AT3G17300.1	protein_coding			COMPLEX 1 LYR-like protein;(source:Araport11)
AT3G17260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.6e-27 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT3G17390.1	protein_coding	S-adenosylmethionine synthetase family protein	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase family protein;(source:Araport11)
AT3G17310.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes DRM3 (Domains Rearranged Methyltransferase3), a catalytically mutated paralog of the cytosine methyltransferase DRM2. Despite being catalytically mutated, DRM3 is required for normal maintenance of non-CG DNA methylation, establishment of RNA-directed DNA methylation triggered by repeat sequences and accumulation of repeat-associated small RNAs.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G27610.1	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT3G27700.1	protein_coding	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein		zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT3G27710.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G27670.1	protein_coding	ARM repeat superfamily protein	A novel protein, did not show high similarity to any protein of known function; reveals a novel genetic connection between lipid synthesis and embryo development. Expressed in all tissues examined including leaves, flowers, roots, stems, and siliques, but accumulation levels were not correlated with the degree to which different organs appeared affected by the mutation. Mutant plants showed alterations in the cuticular wax profiles and embryo development. The mRNA is cell-to-cell mobile.	ARM repeat superfamily protein;(source:Araport11)
AT3G27720.1	protein_coding	IBR domain containing protein		IBR domain containing protein;(source:Araport11)
AT3G27620.1	protein_coding	alternative oxidase 1C	encodes an isoform of alternate oxidase. expressed in all tissues examined and expression is not induced by antimycin A, an inhibitor of complex III in the mitochondrial respiratory chain.	alternative oxidase 1C;(source:Araport11)
AT3G27680.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G27690.1	protein_coding	photosystem II light harvesting complex gene 2.3	Encodes Lhcb2.4.  Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. The mRNA is cell-to-cell mobile.	photosystem II light harvesting complex protein 2.3;(source:Araport11)
AT3G27730.1	protein_coding	ATP binding;ATP-dependent helicases;DNA helicases	DNA helicase required for interference-sensitive meiotic crossover events.	DNA helicase ROCK-N-ROLLERS;(source:Araport11)
AT3G27740.1	protein_coding	carbamoyl phosphate synthetase A	Encodes carbamoyl phosphate synthetase (CPS) small subunit (carA), also named as VEN6. Heterologous expression of the Arabidopsis VEN3 and VEN6 genes in a CPS-deficient Escherichia coli strain fully restored bacterial growth in minimal medium, demonstrating the enzymatic activity of the VEN3 and VEN6 proteins.	carbamoyl phosphate synthetase A;(source:Araport11)
AT3G27630.1	protein_coding		SMR7 is a member of the SIAMESE-RELATED Cyclin-Dependent Kinase Inhibitor family. It is induced by ROS/oxidative stress.	cyclin-dependent kinase inhibitor SMR3-like protein;(source:Araport11)
AT3G27770.1	protein_coding			plant/protein;(source:Araport11)
AT3G27640.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G27650.1	protein_coding	LOB domain-containing protein 25		LOB domain-containing protein 25;(source:Araport11)
AT3G27660.1	protein_coding	oleosin 4	Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation.  Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.	oleosin 4;(source:Araport11)
AT3G12910.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein		NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT3G12990.1	protein_coding	ribonuclease PH45A	Encodes a 3'-5' exoribonuclease, partially redundant with CER7. Involved in epicuticular wax biosynthesis.	ribonuclease PH45A;(source:Araport11)
AT3G13000.1	protein_coding	Protein of unknown function, DUF547		ubiquinone biosynthesis protein (Protein of unknown function, DUF547);(source:Araport11)
AT3G12920.1	protein_coding	SBP (S-ribonuclease binding protein) family protein	Encodes one of the BRGs (BOI-related gene) involved in resistance to Botrytis cinerea.	SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT3G13010.1	protein_coding	hAT transposon superfamily protein		hAT transposon superfamily protein;(source:Araport11)
AT3G12930.1	protein_coding	Lojap-related protein		Lojap-related protein;(source:Araport11)
AT3G13020.1	protein_coding	hAT transposon superfamily protein		hAT transposon superfamily protein;(source:Araport11)
AT3G12940.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G13030.1	protein_coding	hAT transposon superfamily protein		hAT transposon superfamily protein;(source:Araport11)
AT3G12950.1	protein_coding	Trypsin family protein		Trypsin family protein;(source:Araport11)
AT3G13040.1	protein_coding	myb-like HTH transcriptional regulator family protein		myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT3G12960.1	protein_coding			seed maturation protein;(source:Araport11)
AT3G13050.1	protein_coding	Major facilitator superfamily protein	Encodes a plant nicotinate transporter than can also transport trigonelline (N-methylnicotinate).	Major facilitator superfamily protein;(source:Araport11)
AT3G12970.1	protein_coding			serine/arginine repetitive matrix-like protein;(source:Araport11)
AT3G13060.1	protein_coding	evolutionarily conserved C-terminal region 5		evolutionarily conserved C-terminal region 5;(source:Araport11)
AT3G12980.1	protein_coding	histone acetyltransferase of the CBP family 5	Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates.  No  single prior lysine acetylation is sufficient to block HAC5 acetylation of the H3 or H4 peptides,  suggesting that HAC5 can acetylate any  of several lysines present in the peptides. Di-acetylation of  both lysines 9 and 14 on the H3 peptide significantly reduces  the level of incorporated radioactive acetylation catalyzed by  HAC5, indicating that HAC5 may acetylate either lysine 9 or  lysine 14. The mRNA is cell-to-cell mobile.	histone acetyltransferase of the CBP family 5;(source:Araport11)
AT3G16730.1	protein_coding			condensin-2 complex subunit H2-like protein;(source:Araport11)
AT3G16650.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G16740.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G16660.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT3G16600.1	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related		SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT3G16570.1	protein_coding	rapid alkalinization factor 23	Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  RALF23 is significantly downregulated by brassinolide treatment of seedlings.   Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere.	rapid alkalinization factor 23;(source:Araport11)
AT3G16670.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT3G16610.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT3G16680.1	protein_coding	DNA binding;DNA-directed RNA polymerases		DNA binding / DNA-directed RNA polymerase;(source:Araport11)
AT3G16750.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G16620.1	protein_coding	translocon outer complex protein 120	component of TOC complex, plastid protein import machinery.	translocon outer complex protein 120;(source:Araport11)
AT3G16760.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G16630.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Kinesin-13A localized to entire Golgi stacks. Involved in trichome development.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G16690.1	protein_coding	Nodulin MtN3 family protein		Nodulin MtN3 family protein;(source:Araport11)
AT3G16700.1	protein_coding	Fumarylacetoacetate (FAA) hydrolase family		Fumarylacetoacetate (FAA) hydrolase family;(source:Araport11)
AT3G16640.1	protein_coding	translationally controlled tumor protein	Encodes a protein homologous to  translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.	translationally controlled tumor protein;(source:Araport11)
AT3G16780.1	protein_coding	Ribosomal protein L19e family protein		Ribosomal protein L19e family protein;(source:Araport11)
AT3G16710.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G16720.1	protein_coding	TOXICOS EN LEVADURA 2	RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. The mRNA is cell-to-cell mobile.	TOXICOS EN LEVADURA 2;(source:Araport11)
AT3G16580.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G16590.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G21330.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G21360.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G21420.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	LATERAL BRANCHING OXIDOREDUCTASE (LBO), encodes an oxidoreductase-like enzyme of the 2-oxoglutarate and Fe(II)-dependent dioxygenase superfamily. It is involved in the biosynthesis of strigolactones.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G21370.1	protein_coding	beta glucosidase 19		beta glucosidase 19;(source:Araport11)
AT3G21380.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G21390.1	protein_coding	Mitochondrial substrate carrier family protein	Encodes a mitochondrial thiamin diphosphate carrier.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT3G21450.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G21400.1	protein_coding			dynein beta chain, ciliary protein;(source:Araport11)
AT3G21410.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G21465.1	protein_coding			adenylyl cyclase;(source:Araport11)
AT3G21340.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G21350.1	protein_coding	RNA polymerase transcriptional regulation mediator-related		RNA polymerase transcriptional regulation mediator-like protein;(source:Araport11)
AT3G19090.1	protein_coding	RNA-binding protein		RNA-binding protein;(source:Araport11)
AT3G14600.1	protein_coding	Ribosomal protein L18ae/LX family protein		Ribosomal protein L18ae/LX family protein;(source:Araport11)
AT3G14690.1	protein_coding	cytochrome P450, family 72, subfamily A, polypeptide 15	putative cytochrome P450 The mRNA is cell-to-cell mobile.	cytochrome P450, family 72, subfamily A, polypeptide 15;(source:Araport11)
AT3G14610.1	protein_coding	cytochrome P450, family 72, subfamily A, polypeptide 7	putative cytochrome P450	cytochrome P450, family 72, subfamily A, polypeptide 7;(source:Araport11)
AT3G14620.1	protein_coding	cytochrome P450, family 72, subfamily A, polypeptide 8	putative cytochrome P450 The mRNA is cell-to-cell mobile.	cytochrome P450, family 72, subfamily A, polypeptide 8;(source:Araport11)
AT3G14520.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein	Encodes a sesterterpene synthase responsible for the biosynthesis of the tricyclic sesterterpene (+)-thalianatriene with a 11-6-5 fused ring system.	Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G14550.1	protein_coding	geranylgeranyl pyrophosphate synthase 3	Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots.	geranylgeranyl pyrophosphate synthase 3;(source:Araport11)
AT3G14630.1	protein_coding	cytochrome P450, family 72, subfamily A, polypeptide 9	putative cytochrome P450	cytochrome P450, family 72, subfamily A, polypeptide 9;(source:Araport11)
AT3G14700.1	protein_coding	SART-1 family		SART-1 family;(source:Araport11)
AT3G14560.1	protein_coding		Its transcript is targeted by miR824.	hypothetical protein;(source:Araport11)
AT3G14640.1	protein_coding	cytochrome P450, family 72, subfamily A, polypeptide 10	putative cytochrome P450	cytochrome P450, family 72, subfamily A, polypeptide 10;(source:Araport11)
AT3G14710.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G14570.1	protein_coding	glucan synthase-like 4	encodes a protein similar to callose synthase	glucan synthase-like 4;(source:Araport11)
AT3G14720.1	protein_coding	MAP kinase 19	member of MAP Kinase The mRNA is cell-to-cell mobile.	MAP kinase 19;(source:Araport11)
AT3G14580.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G14650.1	protein_coding	cytochrome P450, family 72, subfamily A, polypeptide 11	putative cytochrome P450 The mRNA is cell-to-cell mobile.	cytochrome P450, family 72, subfamily A, polypeptide 11;(source:Araport11)
AT3G14730.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G14660.1	protein_coding	cytochrome P450, family 72, subfamily A, polypeptide 13	putative cytochrome P450 The mRNA is cell-to-cell mobile.	cytochrome P450, family 72, subfamily A, polypeptide 13;(source:Araport11)
AT3G14590.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	Ca2+-dependent lipid-binding protein	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G14740.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G14670.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G14750.1	protein_coding			structural maintenance of chromosomes domain protein;(source:Araport11)
AT3G14680.1	protein_coding	cytochrome P450, family 72, subfamily A, polypeptide 14	putative cytochrome P450	cytochrome P450, family 72, subfamily A, polypeptide 14;(source:Araport11)
AT3G14530.1	protein_coding	Terpenoid synthases superfamily protein		Terpenoid synthases superfamily protein;(source:Araport11)
AT3G14540.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein	Encodes a sesterterpene synthase responsible for the biosynthesis of the pentacyclic sesterterpene (&#8722;)-retigeranin B with a 5- 5-5-6-5 fused ring system.	Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G18220.1	protein_coding	Phosphatidic acid phosphatase (PAP2) family protein		Phosphatidic acid phosphatase (PAP2) family protein;(source:Araport11)
AT3G18230.1	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT3G18240.1	protein_coding	Ribosomal protein S24/S35, mitochondrial		Ribosomal protein S24/S35;(source:Araport11)
AT3G18250.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT3G18260.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G18270.1	protein_coding	cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene	a cytochrome P450 pseudogene. the second half of the gene overlaps perfectly with the other gene model.	cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene;(source:Araport11)
AT3G18280.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G18290.1	protein_coding	zinc finger protein-related	Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. The mRNA is cell-to-cell mobile.	zinc finger protein-like protein;(source:Araport11)
AT3G30770.1	protein_coding	Eukaryotic aspartyl protease family protein	Eukaryotic aspartyl protease family protein. Upregulated by cold.	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G30750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24910.1);(source:TAIR10)
AT3G30760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30470.1);(source:TAIR10)
AT3G28170.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G28180.1	protein_coding	Cellulose-synthase-like C4	encodes a gene similar to cellulose synthase The mRNA is cell-to-cell mobile.	Cellulose-synthase-like C4;(source:Araport11)
AT3G28190.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G28160.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.4e-06 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G17720.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT3G17730.1	protein_coding	NAC domain containing protein 57		NAC domain containing protein 57;(source:Araport11)
AT3G17740.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G17750.1	protein_coding	Protein kinase superfamily protein	Encodes a member of a plant-specific subgroup in the DYRK (dual-specificity tyrosine phosphorylation-regulated kinase) family.	Protein kinase superfamily protein;(source:Araport11)
AT3G17760.1	protein_coding	glutamate decarboxylase 5		glutamate decarboxylase 5;(source:Araport11)
AT3G17770.1	protein_coding	Dihydroxyacetone kinase		Dihydroxyacetone kinase;(source:Araport11)
AT3G17780.1	protein_coding			B-cell receptor-associated-like protein;(source:Araport11)
AT3G30250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G31150.1);(source:TAIR10)
AT3G30200.1	protein_coding	Plant transposase (Ptta/En/Spm family)		Plant transposase (Ptta/En/Spm family);(source:Araport11)
AT3G30210.1	protein_coding	myb domain protein 121	Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB121).	myb domain protein 121;(source:Araport11)
AT3G30190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24370.1);(source:TAIR10)
AT3G30220.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G30230.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT3G30240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);contains InterPro domain Retrotransposon gag protein;(source:TAIR10)
AT3G21620.1	protein_coding	ERD (early-responsive to dehydration stress) family protein		ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT3G21540.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G21630.1	protein_coding	chitin elicitor receptor kinase 1	LysM receptor-like kinase, based on protein sequence alignment analysis, it has a typical RD signaling domain in its catalytic loop and possesses autophosphorylation activity. Involved in the perception and transduction of the chitin oligosaccharide elicitor. Located in the plasma membrane. CERK1 phosphorylates LIK1, a LLR-RLK that is involved in innate immunity,	chitin elicitor receptor kinase 1;(source:Araport11)
AT3G21550.1	protein_coding	DUF679 domain membrane protein 2		transmembrane protein, putative (DUF679 domain membrane protein 2);(source:Araport11)
AT3G21490.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G21470.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT3G21560.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase  on sinapic acid). Also shown to be required for Arabidopsis nonhost resistance to the Asian soybean rust pathogen Phakopsora pachyrhizi.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G21500.1	protein_coding	1-deoxy-D-xylulose 5-phosphate synthase 1	Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.	1-deoxy-D-xylulose 5-phosphate synthase 1;(source:Araport11)
AT3G21640.1	protein_coding	FKBP-type peptidyl-prolyl cis-trans isomerase family protein	encodes a 42 kDa FK506-binding protein (AtFKBP42) that possesses similarity to multidomain peptidyl-prolyl cis/trans isomerases (PPIases, EC 5.2.1.8), which are known to be components of mammalian steroid hormone receptor complexes. The protein appears to be localized to the plasma membrane by electron microscopy and binds to HSP90.1 and calmodulin in vitro. It also aggregates citrate synthase in vitro but does NOT show PPIase activity in vivo. Mutants are reduced in size and exhibit disoriented growth in all organs. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	FKBP-type peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G21570.1	protein_coding			proline-rich nuclear receptor coactivator;(source:Araport11)
AT3G21510.1	protein_coding	histidine-containing phosphotransmitter 1	Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	histidine-containing phosphotransmitter 1;(source:Araport11)
AT3G21650.1	protein_coding	Protein phosphatase 2A regulatory B subunit family protein	Encodes protein phosphatase 2A (PP2A) B'zeta subunit.  Targeted to mitochondria.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT3G21580.1	protein_coding	cobalt ion transmembrane transporters		cobalt ion transmembrane transporter;(source:Araport11)
AT3G21520.1	protein_coding	DUF679 domain membrane protein 1	Encodes a protein is directly or indirectly involved in membrane fission during breakdown of the ER and the tonoplast during leaf senescence and in membrane fusion during vacuole biogenesis in roots. The mRNA is cell-to-cell mobile.	transmembrane protein, putative (DUF679 domain membrane protein 1);(source:Araport11)
AT3G21660.1	protein_coding	UBX domain-containing protein		UBX domain-containing protein;(source:Araport11)
AT3G21590.1	protein_coding	Senescence/dehydration-associated protein-related		Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT3G21530.1	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT3G21670.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G21600.1	protein_coding	Senescence/dehydration-associated protein-related		Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT3G21680.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G21610.1	protein_coding	Acid phosphatase/vanadium-dependent haloperoxidase-related protein		Acid phosphatase/vanadium-dependent haloperoxidase-related protein;(source:Araport11)
AT3G21690.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT3G21480.1	protein_coding	BRCT domain-containing DNA repair protein		BRCT domain-containing DNA repair protein;(source:Araport11)
AT3G13110.1	protein_coding	serine acetyltransferase 2;2	Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.	serine acetyltransferase 2;(source:Araport11)
AT3G13190.1	protein_coding	Plant protein of unknown function (DUF827)		WEB family protein (DUF827);(source:Araport11)
AT3G13120.1	protein_coding	Ribosomal protein S10p/S20e family protein		Ribosomal protein S10p/S20e family protein;(source:Araport11)
AT3G13200.1	protein_coding	Cwf15 / Cwc15 cell cycle control family protein		Cwf15 / Cwc15 cell cycle control family protein;(source:Araport11)
AT3G13130.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G13210.1	protein_coding	crooked neck protein, putative / cell cycle protein, putative		crooked neck protein, putative / cell cycle protein;(source:Araport11)
AT3G13140.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G13220.1	protein_coding	ABC-2 type transporter family protein	Encodes a ATP-binding cassette transporter G26 (ABCG26) involved in tapetal cell and pollen development. Required for male fertility and pollen exine formation.	ABC-2 type transporter family protein;(source:Araport11)
AT3G13150.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G13070.1	protein_coding	CBS domain-containing protein / transporter associated domain-containing protein		CBS domain-containing protein / transporter associated domain-containing protein;(source:Araport11)
AT3G13080.1	protein_coding	multidrug resistance-associated protein 3	encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites.  The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.	multidrug resistance-associated protein 3;(source:Araport11)
AT3G13160.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Ribosomal pentatricopeptide repeat protein	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G13090.1	protein_coding	multidrug resistance-associated protein 8	member of MRP subfamily	multidrug resistance-associated protein 8;(source:Araport11)
AT3G13170.1	protein_coding	Spo11/DNA topoisomerase VI, subunit A protein	Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA).  Required for meiotic recombination.  AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by  3 h a majority (80%) of meiocytes at this time point  contain >50 foci. However, by 5 h, AtSPO11-1 foci are  no longer detectable. This suggests that the protein undergoes  a rapid cycle of accumulation and disappearance  in meiocytes over a period of between 1 and 5 h post-S  phase.	Spo11/DNA topoisomerase VI, subunit A protein;(source:Araport11)
AT3G13100.1	protein_coding	multidrug resistance-associated protein 7	member of MRP subfamily	multidrug resistance-associated protein 7;(source:Araport11)
AT3G13180.1	protein_coding	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein		NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein;(source:Araport11)
AT3G30843.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08056.1);(source:TAIR10)
AT3G30845.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G30840.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15520.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G15440.1	protein_coding			RING/U-box protein;(source:Araport11)
AT3G15530.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G15450.1	protein_coding	Aluminium induced protein with YGL and LRDR motifs		aluminum induced protein with YGL and LRDR motifs;(source:Araport11)
AT3G15420.1	protein_coding	Transcription factor TFIIIC, tau55-related protein		Transcription factor TFIIIC, tau55-related protein;(source:Araport11)
AT3G15360.1	protein_coding	thioredoxin M-type 4	encodes a prokaryotic thioredoxin The mRNA is cell-to-cell mobile.	thioredoxin M-type 4;(source:Araport11)
AT3G15460.1	protein_coding	Ribosomal RNA processing Brix domain protein	Encodes one of two Arabidopsis orthologs of yeast BRX1, a protein involved in maturation of the large ribosomal subunit.  The proteins are mainly localized in nucleolus.  Mutant plants are affected in pre-rRNA processing.	Ribosomal RNA processing Brix domain protein;(source:Araport11)
AT3G15430.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G15540.1	protein_coding	indole-3-acetic acid inducible 19	Primary auxin-responsive gene. Involved in the regulation stamen filaments development.	indole-3-acetic acid inducible 19;(source:Araport11)
AT3G15470.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G15550.1	protein_coding			trichohyalin;(source:Araport11)
AT3G15480.1	protein_coding	Protein of unknown function (DUF1218)		fiber (DUF1218);(source:Araport11)
AT3G15370.1	protein_coding	expansin 12	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin 12;(source:Araport11)
AT3G15490.1	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT3G15380.1	protein_coding	Plasma-membrane choline transporter family protein	Encodes a member of a choline transporter-like protein family that facilitates choline transport, localizes to the trans-Golgi network, and during cytokinesis is associated with the phragmoplast. Loss-of-function results in an altered choline metabolite profile, defects in sieve plate and sieve pore formation and impaired phloem transport.	Plasma-membrane choline transporter family protein;(source:Araport11)
AT3G15500.1	protein_coding	NAC domain containing protein 3	Encodes an ATAF-like NAC-domain transcription factor that doesn't contain C-terminal sequences shared by CUC1, CUC2 and NAM. Note: this protein (AtNAC3) is not to be confused with the protein encoded by locus AT3G29035, which, on occasion, has also been referred to as AtNAC3. The mRNA is cell-to-cell mobile.	NAC domain containing protein 3;(source:Araport11)
AT3G15390.1	protein_coding	silencing defective 5	Encodes a novel protein that is similar to PRL1 interacting factor and is involved in virus induced silencing.	silencing defective 5;(source:Araport11)
AT3G15510.1	protein_coding	NAC domain containing protein  2	Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2.	NAC domain containing protein 2;(source:Araport11)
AT3G15400.1	protein_coding	anther 20	Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.	anther 20;(source:Araport11)
AT3G15410.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G25140.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Quasimodo1, encodes a glycosyltransferase, involved in homogalacturonan biosynthesis; mutant shows cell adhesion defect and lower wall uronic acid content. The mRNA is cell-to-cell mobile.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT3G25270.1	protein_coding	Ribonuclease H-like superfamily protein		Ribonuclease H-like superfamily protein;(source:Araport11)
AT3G25210.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G25150.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT3G25280.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G25220.1	protein_coding	FK506-binding protein 15 kD-1	immunophilin (FKBP15-1)	FK506-binding protein 15 kD-1;(source:Araport11)
AT3G25290.1	protein_coding	Auxin-responsive family protein		Auxin-responsive family protein;(source:Araport11)
AT3G25090.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G25070.1	protein_coding	RPM1 interacting protein 4	Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is 'guarded' by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved  by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the  plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation. Major virulence target of the TTSE HopF2Pto. The mRNA is cell-to-cell mobile.	RPM1 interacting protein 4;(source:Araport11)
AT3G25160.1	protein_coding	ER lumen protein retaining receptor family protein		ER lumen protein retaining receptor family protein;(source:Araport11)
AT3G25170.1	protein_coding	ralf-like 26	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 26;(source:Araport11)
AT3G25230.1	protein_coding	rotamase FKBP 1	Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family.  It has three FKBP12-like domains, tetratricopeptide repeats, and a putative calmodulin binding domain. Modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	rotamase FKBP 1;(source:Araport11)
AT3G25100.1	protein_coding	cell division cycle 45	Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45	cell division cycle 45;(source:Araport11)
AT3G25180.1	protein_coding	cytochrome P450, family 82, subfamily G, polypeptide 1	Encodes a cytochrome P450 monooxygenase (CYP82G1) that catalyzes the production of two volatile homoterpenes, TMTT and DMNT, although it is only likely to produce TMTT in planta. TMTT can be involved in attracting predatory insects to protect Arabidopsis plants from herbivorous pests. Homoterpene synthesis is also stimulated by fungal elicitors which increase the transcript levels of CYP82G1.	cytochrome P450, family 82, subfamily G, polypeptide 1;(source:Araport11)
AT3G25080.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein;(source:Araport11)
AT3G25110.1	protein_coding	fatA acyl-ACP thioesterase	Encodes a FatA acyl-ACP thioesterase	fatA acyl-ACP thioesterase;(source:Araport11)
AT3G25240.1	protein_coding	Protein of unknown function (DUF506) 		sulfate/thiosulfate import ATP-binding protein, putative (DUF506);(source:Araport11)
AT3G25120.1	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein		Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT3G25190.1	protein_coding	Vacuolar iron transporter (VIT) family protein	The gene encodes nodulin-like21 whose transcript abundance was repressed under conditions of Fe-deficient growth.	Vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT3G25250.1	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein	Arabidopsis protein kinase The mRNA is cell-to-cell mobile.	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT3G25130.1	protein_coding			acidic leucine-rich nuclear phosphoprotein 32 family B protein;(source:Araport11)
AT3G25200.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G25260.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G26120.1	protein_coding	terminal EAR1-like 1	Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL1 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins.	terminal EAR1-like 1;(source:Araport11)
AT3G12900.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	S8H hydroxylates scopoletin to generate fraxetin (8-hydroxyscopoletin). Fraxetin and its oxidized analog sideretin (5-hydroxyfraxetin) are catecholic coumarins secreted into the rhizosphere under conditions of low iron availability and help mobilize this nutrient from insoluble iron(III) pools in the soil.S8H hydroxylates scopoletin to generate fraxetin (8-hydroxyscopoletin). Fraxetin and its oxidized analog sideretin (5-hydroxyfraxetin) are catecholic coumarins secreted into the rhizosphere under conditions of low iron availability and help mobilize this nutrient from insoluble iron(III) pools in the soil.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G12870.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G12880.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G12890.1	protein_coding	activator of spomin::LUC2	Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains.  Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes.	activator of spomin::LUC2;(source:Araport11)
AT3G22160.1	protein_coding	VQ motif-containing protein	JAV1 is a repressor of jasmonate-mediated defense responses.	VQ motif-containing protein;(source:Araport11)
AT3G22170.1	protein_coding	far-red elongated hypocotyls 3	A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1.	far-red elongated hypocotyls 3;(source:Araport11)
AT3G22110.1	protein_coding	20S proteasome alpha subunit C1	Encodes the alpha-3 subunit of 20s proteasome.	20S proteasome alpha subunit C1;(source:Araport11)
AT3G22180.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT3G22190.1	protein_coding	IQ-domain 5	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 5;(source:Araport11)
AT3G22200.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT3G22120.1	protein_coding	cell wall-plasma membrane linker protein	Cell wall-plasma membrane linker protein homolog (CWLP)	cell wall-plasma membrane linker protein;(source:Araport11)
AT3G22210.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G22220.1	protein_coding	hAT transposon superfamily		hAT transposon superfamily;(source:Araport11)
AT3G22230.1	protein_coding	Ribosomal L27e protein family		Ribosomal L27e protein family;(source:Araport11)
AT3G22150.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Involved in RNA editing of plastid atpF and mitochondrial nad5.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G17630.1	protein_coding	cation/H+ exchanger 19	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 19;(source:Araport11)
AT3G17550.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G17640.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G17560.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G17570.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G17470.1	protein_coding	Ca2+-activated RelA/spot homolog		Ca2+-activated RelA/spot-like protein;(source:Araport11)
AT3G17480.1	protein_coding	F-box and associated interaction domains-containing protein		F-box/associated interaction domain protein;(source:Araport11)
AT3G17580.1	protein_coding			SsrA-binding protein;(source:Araport11)
AT3G17650.1	protein_coding	YELLOW STRIPE like 5	Arabidopsis thaliana metal-nicotianamine transporter YSL5	YELLOW STRIPE like 5;(source:Araport11)
AT3G17490.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G17590.1	protein_coding	transcription regulatory protein SNF5, putative (BSH)	Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes.	transcription regulatory protein SNF5, putative (BSH);(source:Araport11)
AT3G17660.1	protein_coding	ARF-GAP domain 15	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes; AGD15 belongs to the class 4, together with AGD14.	ARF-GAP domain 15;(source:Araport11)
AT3G17500.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G17600.1	protein_coding	indole-3-acetic acid inducible 31	Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as  gravitropism, root development, shoot development, and cotyledon vascular development.	indole-3-acetic acid inducible 31;(source:Araport11)
AT3G17670.1	protein_coding	tetratricopeptide repeat (TPR)-containing protein		tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G17510.1	protein_coding	CBL-interacting protein kinase 1	Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.	CBL-interacting protein kinase 1;(source:Araport11)
AT3G17680.1	protein_coding	Kinase interacting (KIP1-like) family protein		Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT3G17520.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT3G17620.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G17690.1	protein_coding	cyclic nucleotide gated channel 19	member of Cyclic nucleotide gated channel family	cyclic nucleotide gated channel 19;(source:Araport11)
AT3G17530.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G17700.1	protein_coding	cyclic nucleotide-binding transporter 1	cyclic nucleotide-binding transporter 1, member of a family  of cyclic nucleotide gated channels. The mRNA is cell-to-cell mobile.	cyclic nucleotide-binding transporter 1;(source:Araport11)
AT3G17540.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G17710.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G19380.1	protein_coding	plant U-box 25	PUB25 and PUB26 are closely related paralogs that encode functional E3 ligases. They function in immune response pathway by targeting BIK1 for degradation.	plant U-box 25;(source:Araport11)
AT3G19460.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G19390.1	protein_coding	Granulin repeat cysteine protease family protein		Granulin repeat cysteine protease family protein;(source:Araport11)
AT3G19470.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G19330.1	protein_coding	Protein of unknown function (DUF677)		transmembrane protein, putative (DUF677);(source:Araport11)
AT3G19400.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G19300.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G19340.1	protein_coding	Protein of unknown function (DUF3754)		aminopeptidase (DUF3754);(source:Araport11)
AT3G19410.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G19480.1	protein_coding	D-3-phosphoglycerate dehydrogenase		D-3-phosphoglycerate dehydrogenase;(source:Araport11)
AT3G19350.1	protein_coding	maternally expressed pab C-terminal	Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.	maternally expressed pab C-terminal;(source:Araport11)
AT3G19420.1	protein_coding	PTEN 2	Encodes a phosphatase with low in vitro tyrosine phosphatase activity that is capable of dephosphorylating in vitro the 3'phosphate group of PI3P, PI(3,4)P2, and PI(3,5)P2 and may be an effector of lipid signaling. The mRNA is cell-to-cell mobile.	PTEN 2;(source:Araport11)
AT3G19490.1	protein_coding	sodium:hydrogen antiporter 1	member of Na+/H+ antiporter-Putative family	sodium:hydrogen antiporter 1;(source:Araport11)
AT3G19360.1	protein_coding	Zinc finger (CCCH-type) family protein		Zinc finger (CCCH-type) family protein;(source:Araport11)
AT3G19430.1	protein_coding	late embryogenesis abundant protein-related / LEA protein-related		late embryogenesis abundant protein-related / LEA protein-like protein;(source:Araport11)
AT3G19500.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G19370.1	protein_coding	Plant protein of unknown function (DUF869)		filament-like protein (DUF869);(source:Araport11)
AT3G19440.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT3G19510.1	protein_coding	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain	Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1  homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains.	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein;(source:Araport11)
AT3G19450.1	protein_coding	GroES-like zinc-binding alcohol dehydrogenase family protein	Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and  d-hydroxyconiferyl aldehydes as substrates. The mRNA is cell-to-cell mobile.	GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT3G19310.1	protein_coding	PLC-like phosphodiesterases superfamily protein		PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT3G19320.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G28860.1	protein_coding	ATP binding cassette subfamily B19	Encodes a member of the ATP-binding cassette (ABC) transporter family that is involved in auxin transport and is involved in postembryonic organ separation. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1.	ATP binding cassette subfamily B19;(source:Araport11)
AT3G28870.1	protein_coding			paired amphipathic helix SIN3-like protein;(source:Araport11)
AT3G28880.1	protein_coding	Ankyrin repeat family protein		serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit;(source:Araport11)
AT3G28890.1	protein_coding	receptor like protein 43		receptor like protein 43;(source:Araport11)
AT3G28900.1	protein_coding	Ribosomal protein L34e superfamily protein		Ribosomal protein L34e superfamily protein;(source:Araport11)
AT3G28910.1	protein_coding	myb domain protein 30	transcription factor myb homologue	myb domain protein 30;(source:Araport11)
AT3G14220.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G26640.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes LIGHT-REGULATED WD1 (LWD1), a clock proteins regulating circadian period length and photoperiodic flowering.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G26700.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G26650.1	protein_coding	glyceraldehyde 3-phosphate dehydrogenase A subunit	Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecular complex with phosphoribulokinase (PRK) thought to be linked by a small peptide encoded by CP12-2. GapA-1 is coordinately expressed by light with PRK and CP12-2. The enzyme activity, tested in leaf protein extracts dropped significantly after external sucrose treatment for the photosynthetic GAPDH (NADPH-dependent) but not for the cytosolic GAPDH (NADH-dependent).	glyceraldehyde 3-phosphate dehydrogenase A subunit;(source:Araport11)
AT3G26710.1	protein_coding	cofactor assembly of complex C		cofactor assembly of complex C;(source:Araport11)
AT3G26660.1	protein_coding	LOB domain-containing protein 24		LOB domain-containing protein 24;(source:Araport11)
AT3G26720.1	protein_coding	Glycosyl hydrolase family 38 protein		Glycosyl hydrolase family 38 protein;(source:Araport11)
AT3G26670.1	protein_coding	Protein of unknown function (DUF803)		magnesium transporter, putative (DUF803);(source:Araport11)
AT3G26730.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G26680.1	protein_coding	DNA repair metallo-beta-lactamase family protein	involved in a SNM-dependent recombinational  repair process of oxidatively induced DNA damage.	DNA repair metallo-beta-lactamase family protein;(source:Araport11)
AT3G26740.1	protein_coding	CCR-like	transcripts are  differentially regulated at the level of mRNA stability at different times of day controlled by the circadian clock. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	CCR-like protein;(source:Araport11)
AT3G26690.1	protein_coding	nudix hydrolase homolog 13	Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.	nudix hydrolase homolog 13;(source:Araport11)
AT3G26620.1	protein_coding	LOB domain-containing protein 23		LOB domain-containing protein 23;(source:Araport11)
AT3G26630.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G23340.1	protein_coding	casein kinase I-like 10	Member of CKL gene family (CKL-C group).	casein kinase I-like 10;(source:Araport11)
AT3G23380.1	protein_coding	ROP-interactive CRIB motif-containing protein 5	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Gene is expressed predominantly in inflorescence and flower tissue.	ROP-interactive CRIB motif-containing protein 5;(source:Araport11)
AT3G23390.1	protein_coding	Zinc-binding ribosomal protein family protein		Zinc-binding ribosomal protein family protein;(source:Araport11)
AT3G23400.1	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein	Encodes FIBRILLIN 4 (FIB4). The fibrillins are a large family of chloroplast proteins that have been linked with stress tolerance and disease resistance. FIBRILLIN 4 is required for plastoglobule development and stress resistance.	Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT3G23440.1	protein_coding	embryo sac development arrest 6		embryo sac development arrest 6;(source:Araport11)
AT3G23410.1	protein_coding	fatty alcohol oxidase 3	Encodes a fatty alcohol oxidase.	fatty alcohol oxidase 3;(source:Araport11)
AT3G23450.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G23330.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G23460.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G23370.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G23310.1	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein		AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT3G23430.1	protein_coding	phosphate 1	Encodes a protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. The mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. Its  expression is repressed by phosphate (Pi) in shoots, and transiently induced by phosphite (Phi) in roots and shoots. PHO is expressed in developing ovules and plays a role in the transfer of Ph from maternal tissues to filial tissues.	phosphate 1;(source:Araport11)
AT3G23300.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G23420.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G23350.1	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT3G23320.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G23360.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G14230.1	protein_coding	related to AP2 2	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	related to AP2 2;(source:Araport11)
AT3G14320.1	protein_coding	Zinc finger, C3HC4 type (RING finger) family protein		Zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT3G14400.1	protein_coding	ubiquitin-specific protease 25	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 25;(source:Araport11)
AT3G14330.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a pentatricopeptide repeat protein involved in chloroplast mRNA editing. Mutants display defects in C-U editing of psbE.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G14410.1	protein_coding	Nucleotide/sugar transporter family protein	Nucleotide/sugar transporter family protein	Nucleotide/sugar transporter family protein;(source:Araport11)
AT3G14310.1	protein_coding	pectin methylesterase 3	encodes a pectin methylesterase, targeted by a cellulose binding protein (CBP) from the parasitic nematode Heterodera schachtii during parasitism.	pectin methylesterase 3;(source:Araport11)
AT3G14340.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G14240.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT3G14350.1	protein_coding	STRUBBELIG-receptor family 7		STRUBBELIG-receptor family 7;(source:Araport11)
AT3G14360.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G14250.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G14370.1	protein_coding	Protein kinase superfamily protein	The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.	Protein kinase superfamily protein;(source:Araport11)
AT3G14260.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT3G14380.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT3G14270.1	protein_coding	phosphatidylinositol-4-phosphate 5-kinase family protein	Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. FAB1A and FAB1B complement the enlarged vacuolar phenotype of the fission yeast ste12delta mutant.	phosphatidylinositol-4-phosphate 5-kinase family protein;(source:Araport11)
AT3G14390.1	protein_coding	Pyridoxal-dependent decarboxylase family protein	Meso-diaminopimelate decarboxylase which  catalyzes the decarboxylation of mesodiaminopimelate, the final reaction in the diaminopimelate L-lysine biosynthetic pathway.	Pyridoxal-dependent decarboxylase family protein;(source:Araport11)
AT3G14280.1	protein_coding			LL-diaminopimelate aminotransferase;(source:Araport11)
AT3G14290.1	protein_coding	20S proteasome alpha subunit E2	Encodes 20S proteasome subunit PAE2 (PAE2) that has RNase activity.	20S proteasome alpha subunit E2;(source:Araport11)
AT3G14300.1	protein_coding	pectinesterase family protein		pectinesterase family protein;(source:Araport11)
AT3G07650.1	protein_coding	CONSTANS-like 9	This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO. The mRNA is cell-to-cell mobile.	CONSTANS-like 9;(source:Araport11)
AT3G07660.1	protein_coding	Kinase-related protein of unknown function (DUF1296)		flocculation protein (DUF1296);(source:Araport11)
AT3G07580.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G07570.1	protein_coding	Cytochrome b561/ferric reductase transmembrane with DOMON related domain		Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein;(source:Araport11)
AT3G07590.1	protein_coding	Small nuclear ribonucleoprotein family protein	SmD1a is one of two Yeast SmD1 orthologs, lower levels than SmD1b.It is localized to the nucleus and may play a minor role in RNA splicing and indirectly facilitating PTGS.	Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT3G07600.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G07610.1	protein_coding	Transcription factor jumonji (jmjC) domain-containing protein	IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or the CMT3 non CG-cytosine methylase.	Transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT3G07620.1	protein_coding	Exostosin family protein		glycosyltransferase;(source:Araport11)
AT3G07630.1	protein_coding	arogenate dehydratase 2	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis.  Not less than six genes encoding ADT were identi&#64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	arogenate dehydratase 2;(source:Araport11)
AT3G07640.1	protein_coding			period circadian protein;(source:Araport11)
AT3G19740.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G19660.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G19630.1	protein_coding	Radical SAM superfamily protein		Radical SAM superfamily protein;(source:Araport11)
AT3G19570.1	protein_coding	Family of unknown function (DUF566) 	Encodes SCO3 (snowy cotyledon3), a member of a largely uncharacterized protein family unique to the plant kingdom. The sco3-1 mutation alters chloroplast morphology and development, reduces chlorophyll accumulation, impairs thylakoid formation and photosynthesis in seedlings, and results in photoinhibition under extreme CO(2) concentrations in mature leaves. SCO3 is targeted to the periphery of peroxisomes.	SNOWY COTYLEDON protein (DUF566);(source:Araport11)
AT3G19670.1	protein_coding	pre-mRNA-processing protein 40B	Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold  for RNA processing machineries. Ubiquitously  expressed and localize to the nucleus.	pre-mRNA-processing protein 40B;(source:Araport11)
AT3G19640.1	protein_coding	magnesium transporter 4	Transmembrane magnesium transporter. One of nine family members.	magnesium transporter 4;(source:Araport11)
AT3G19680.1	protein_coding	Protein of unknown function (DUF1005)		hypothetical protein (DUF1005);(source:Araport11)
AT3G19760.1	protein_coding	eukaryotic initiation factor 4A-III	Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles.	eukaryotic initiation factor 4A-III;(source:Araport11)
AT3G19690.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT3G19580.1	protein_coding	zinc-finger protein 2	Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild desiccation. The protein is localized to the nucleus and acts as a transcriptional repressor.	zinc-finger protein 2;(source:Araport11)
AT3G19700.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes leucine rich repeat (LRR) kinase.  Iku2-3 identified in a screen for mutants with abnormal endosperm. Sporophytic recessive mutants have reduced embryo and endosperm size. Seed size is also reduced and the shape is abnormal suggesting an interaction between the endosperm and cell elongation in the integuments.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G19590.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a protein that may have a role in the spindle assembly checkpoint.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G19710.1	protein_coding	branched-chain aminotransferase4	Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.	branched-chain aminotransferase4;(source:Araport11)
AT3G19600.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	Encodes a Ser-2-speci&#64257;c RNAPII CTD phosphatase with two tandem-repeated CTD phosphatase domains that belongs to the group III CTD phosphatase-like (CPL) family.  It positively regulates   ABA and drought responses.	RNA polymerase II carboxy-terminal domain phosphatase-like protein;(source:Araport11)
AT3G19720.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP-ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G19610.1	protein_coding	Plant protein of unknown function (DUF936)	Member of a novel, plant specific family of microtubule associated proteins.	hypothetical protein (DUF936);(source:Araport11)
AT3G19620.1	protein_coding	Glycosyl hydrolase family protein		Glycosyl hydrolase family protein;(source:Araport11)
AT3G19560.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G19650.1	protein_coding	cyclin-related		cyclin-like protein;(source:Araport11)
AT3G12610.1	protein_coding	Leucine-rich repeat (LRR) family protein	Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G12620.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G12590.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G12600.1	protein_coding	nudix hydrolase homolog 16		nudix hydrolase homolog 16;(source:Araport11)
AT3G29290.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G29300.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G29265.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT5G32482.1);(source:TAIR10)
AT3G29270.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G29280.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G28010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38037.1);(source:TAIR10)
AT3G28020.1	protein_coding			DNA-binding protein;(source:Araport11)
AT3G28100.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein The mRNA is cell-to-cell mobile.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G28030.1	protein_coding	5'-3' exonuclease family protein	Required for repair of pyrimidine-pyrimidinone (6-4) dimers. The mRNA is cell-to-cell mobile.	5-3 exonuclease family protein;(source:Araport11)
AT3G28110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1);(source:TAIR10)
AT3G28040.1	protein_coding	Leucine-rich receptor-like protein kinase family protein		Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT3G28120.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G28050.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G28130.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G28060.1	protein_coding	Nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	Nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G28140.1	protein_coding	RNA ligase/cyclic nucleotide phosphodiesterase family protein		RNA ligase/cyclic nucleotide phosphodiesterase family protein;(source:Araport11)
AT3G28070.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G28150.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 22	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. A putative xyloglucan O-acetyltransferase. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 22;(source:Araport11)
AT3G28080.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G27510.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G27500.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G27560.1	protein_coding	Protein kinase superfamily protein	encodes a protein with kinase domains, including catalytic domains for serine/threonine as well as tyrosine kinases. a member of multi-gene family and is expressed in all tissues examined.	Protein kinase superfamily protein;(source:Araport11)
AT3G27520.1	protein_coding			cryptic loci regulator;(source:Araport11)
AT3G27570.1	protein_coding	Sucrase/ferredoxin-like family protein		Sucrase/ferredoxin-like family protein;(source:Araport11)
AT3G27530.1	protein_coding	golgin candidate 6	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast.  A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein.	golgin Putative 6;(source:Araport11)
AT3G27580.1	protein_coding	Protein kinase superfamily protein	D6PK family kinase involved in pulse-induced phototropism but also for time-dependent second positive phototropism, and continuous light-induced hypocotyl phototropism.D6PKL3 is polarly localized within the plasma membrane. It is involved in pollen aperture formation. The protein is localized within distinct regions of the pollen plasma membrane and mutants are also defective in pollen aperture formation.	Protein kinase superfamily protein;(source:Araport11)
AT3G27540.1	protein_coding	beta-1,4-N-acetylglucosaminyltransferase family protein		beta-1,4-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT3G27590.1	protein_coding			reverse transcriptase family protein;(source:Araport11)
AT3G27550.1	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain protein	Mitochondrial protein involved in RNA splicing.  Required for normal mitochondrion biogenesis.	RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT3G27600.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein;(source:Araport11)
AT3G27480.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G27490.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein	GSR1 is a tandem plant PhD homeodomain protein involved in auxin mediated seed dormancy and germination. It was identified in a screen for mutations resistant to the compound germostatin. It interacts with components of the auxin signaling pathway and may function as an auxin stimulated co-repressor.	Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G13680.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G13750.1	protein_coding	beta galactosidase 1	beta-galactosidase, glycosyl hydrolase family 35 The mRNA is cell-to-cell mobile.	beta galactosidase 1;(source:Araport11)
AT3G13682.1	protein_coding	LSD1-like2	Encodes a homolog of human  Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering loci FLC and FWA.	LSD1-like2;(source:Araport11)
AT3G13640.1	protein_coding	RNAse l inhibitor protein 1	member of RLI subfamily	RNAse l inhibitor protein 1;(source:Araport11)
AT3G13690.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT3G13630.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G13650.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT3G13700.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G13760.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G13660.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT3G13710.1	protein_coding	prenylated RAB acceptor 1.F4		prenylated RAB acceptor 1.F4;(source:Araport11)
AT3G13770.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G13662.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT3G13720.1	protein_coding	PRA1 (Prenylated rab acceptor) family protein		PRA1 (Prenylated rab acceptor) family protein;(source:Araport11)
AT3G13772.1	protein_coding	transmembrane nine 7	Encodes an Arabidopsis Transmembrane nine (TMN) protein.  Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.  Overexpression of this protein in yeast alters copper and zinc homeostasis.	transmembrane nine 7;(source:Araport11)
AT3G13670.1	protein_coding	Protein kinase family protein	MUT9-like protein kinase. Contributes to phosphorylation of  photoexcited CRY2. Interaction with CRY2 occurs via the non catalytic PPKC domain.MLK4 phosphorylates the conserved H2A serine 95 residue. Synthetic mutants that cannot phosphorylate H2AS95 fail to complement the late flowering phenotype suggesting that MLK4 promotes long day flowering via phosphorylation.MLK4 is required for H2A295 phosphorylation of GI.	Protein kinase family protein;(source:Araport11)
AT3G13730.1	protein_coding	cytochrome P450, family 90, subfamily D, polypeptide 1	Encodes a cytochrome P-450 gene that is involved in brassinosteroid biosynthesis, most likely in the conversion step of teasterone (TE) to 3-dehydroteasterone (3DT), and/or 6-deoxoteasterone (6-deoxoTE) to 6-deoxo-3-dehydroteasterone (6-deoxo3DT); or the conversion of cathasterone (CT) to TE, and/or 6-deoxocathasterone (6-deoxoCT) to 6-deoxoTE. Recently, CYP90D1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). Member of the CYP90C CYP450 family. Similar to Cytochrome P450 90C1 (ROT3).	cytochrome P450, family 90, subfamily D, polypeptide 1;(source:Araport11)
AT3G13780.1	protein_coding	SMAD/FHA domain-containing protein 		SMAD/FHA domain-containing protein;(source:Araport11)
AT3G13672.1	protein_coding	TRAF-like superfamily protein	SINAT homolog with truncated RING finger and zinc finger domains.	TRAF-like superfamily protein;(source:Araport11)
AT3G13740.1	protein_coding	Ribonuclease III family protein	Encodes one of two chloroplast Mini-RNase III-like enzymes in Arabidopsis.  Double mutants display imprecise maturation of 23S rRNA and other rRNAs.	Ribonuclease III family protein;(source:Araport11)
AT3G13782.1	protein_coding	nucleosome assembly protein1;4	Plants mutated in three ubiquitously expressed NAP1 genes (NAP1;1~NAP1;3) and organ-specifically expressed NAP1;4 gene show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. The NAP1 genes act synergistically with NRP genes in promoting somatic homologous recombination.	nucleosome assembly protein1;(source:Araport11)
AT3G13674.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G13784.1	protein_coding	cell wall invertase 5		cell wall invertase 5;(source:Araport11)
AT3G13790.1	protein_coding	Glycosyl hydrolases family 32 protein	Encodes a protein with invertase activity.	Glycosyl hydrolases family 32 protein;(source:Araport11)
AT3G22270.1	protein_coding	Topoisomerase II-associated protein PAT1		Topoisomerase II-associated protein PAT1;(source:Araport11)
AT3G22240.1	protein_coding			cysteine-rich/transmembrane domain PCC1-like protein;(source:Araport11)
AT3G22250.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G22260.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G14420.1	protein_coding	Aldolase-type TIM barrel family protein	Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance. The mRNA is cell-to-cell mobile.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G14430.1	protein_coding			GRIP/coiled-coil protein;(source:Araport11)
AT3G14440.1	protein_coding	nine-cis-epoxycarotenoid dioxygenase 3	Encodes  9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.	nine-cis-epoxycarotenoid dioxygenase 3;(source:Araport11)
AT3G14450.1	protein_coding	CTC-interacting domain 9	RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain.	CTC-interacting domain 9;(source:Araport11)
AT3G14460.1	protein_coding	LRR and NB-ARC domains-containing disease resistance protein	Leucine rich repeat protein that also contains an adenylate cyclase catalytic core motif. Capable of converting ATP to cAMP in vitro. Mutants show increased susceptibility to fungal pathogens.	LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT3G14500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1);(source:TAIR10)
AT3G14470.1	protein_coding	NB-ARC domain-containing disease resistance protein		NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT3G14510.1	protein_coding	Polyprenyl synthetase family protein		Polyprenyl synthetase family protein;(source:Araport11)
AT3G14480.1	protein_coding	glycine/proline-rich protein		glycine/proline-rich protein;(source:Araport11)
AT3G14490.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G24530.1	protein_coding	AAA-type ATPase family protein / ankyrin repeat family protein		AAA-type ATPase family protein / ankyrin repeat family protein;(source:Araport11)
AT3G24580.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G24540.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT3G24590.1	protein_coding	plastidic type i signal peptidase 1	Encodes a signal peptidase Plsp1 (plastidic type I signal peptidase 1).  Required for thylakoid development. Functions in the maturation of the 75-kD component of the translocon at the outer envelope membrane of chloroplasts and oxygen evolving complex subunit 33 (OE33). Involved in the maturation of PsbO, plastocyanin and FtsH2/8. The mRNA is cell-to-cell mobile.	plastidic type i signal peptidase 1;(source:Araport11)
AT3G24550.1	protein_coding	proline extensin-like receptor kinase 1	Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807). The mRNA is cell-to-cell mobile.	proline extensin-like receptor kinase 1;(source:Araport11)
AT3G24600.1	protein_coding	Late embryogenesis abundant protein, group 2		late embryogenesis abundant protein, group 2;(source:Araport11)
AT3G24560.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	novel gene involved in embryogenesis	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G24610.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G24620.1	protein_coding	RHO guanyl-nucleotide exchange factor 8	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 8;(source:Araport11)
AT3G24500.1	protein_coding	multiprotein bridging factor 1C	One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a bridging factor between a bZIP factor and TBP.  Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid.  Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses.	multiprotein bridging factor 1C;(source:Araport11)
AT3G24510.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT3G24490.1	protein_coding	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein		Alcohol dehydrogenase transcription factor Myb/SANT-like family protein;(source:Araport11)
AT3G24520.1	protein_coding	heat shock transcription factor  C1	member of Heat Stress Transcription Factor (Hsf) family	heat shock transcription factor C1;(source:Araport11)
AT3G24570.1	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT3G29740.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT3G29720.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G29750.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G29670.1	protein_coding	HXXXD-type acyl-transferase family protein	Encodes a malonyltransferase that may play a role in phenolic xenobiotic detoxification. The mRNA is cell-to-cell mobile.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G29650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 5.1e-81 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT3G29680.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G29730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.3e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G29690.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G29760.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G29700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32070.1);(source:TAIR10)
AT3G29710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1);(source:TAIR10)
AT3G29660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37120.1);(source:TAIR10)
AT3G20890.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G20810.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	JMJD5 encodes a protein which contains  a jumonji-C (jmjC) domain. jmjd5 mutant plants have a short-period circadian phenotype. JMJD5 has histone demethylase activity and interacts with EFM to repress FT.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G20730.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		PPR superfamily protein;(source:Araport11)
AT3G20820.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G20740.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a protein similar to the transcriptional regular of the animal Polycomb group and is involved in regulation of establishment of anterior-posterior polar axis in the endosperm and repression of flowering during vegetative phase. Mutation leads endosperm to develop in the absence of fertilization and flowers to form in seedlings and non-reproductive organs. Also exhibits maternal effect gametophytic lethal phenotype, which is suppressed by hypomethylation.  Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF) and SWINGER (SWN or EZA1).  The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. In the ovule, the FIE transcript  levels increase transiently just after fertilization.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G20830.1	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein		AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT3G20750.1	protein_coding	GATA transcription factor 29	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 29;(source:Araport11)
AT3G20840.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation.  It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G20760.1	protein_coding	Nse4, component of Smc5/6 DNA repair complex		Nse4, component of Smc5/6 DNA repair complex;(source:Araport11)
AT3G20850.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT3G20770.1	protein_coding	Ethylene insensitive 3 family protein	Encodes EIN3 (ethylene-insensitive3), a nuclear transcription factor that initiates downstream transcriptional cascades for ethylene responses. EIN3 interacts with MYC2, MYC3 and MYC4 to inhibit jasmonate-induced expression of wound-responsive genes and herbivory-inducible genes, and plant defense against generalist herbivores.	Ethylene insensitive 3 family protein;(source:Araport11)
AT3G20860.1	protein_coding	NIMA-related kinase 5	Encodes a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	Serine/Threonine kinase catalytic domain protein;(source:Araport11)
AT3G20780.1	protein_coding	topoisomerase 6 subunit  B	Encodes putative eukaryotic homolog of archaebacterial topoisomerase VI subunit B, TOP6B. Is essential for endoreduplication and is involved in cell expansion and cell proliferation. The hlq (harlequin) dwarf mutant has fewer root hair and leaf trichome. It has abnormal epidermal cell and accumulates callose.	topoisomerase 6 subunit B;(source:Araport11)
AT3G20870.1	protein_coding	ZIP metal ion transporter family		ZIP metal ion transporter family;(source:Araport11)
AT3G20790.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G20880.1	protein_coding	WIP domain protein 4	WIP4 is a paralog of NTT and along with WIP5,acts redundantly in cell fate determination during primary root development. MP binds to AuxRE motifs within the WIP4 gene and likely regulates its expression.	WIP domain protein 4;(source:Araport11)
AT3G20800.1	protein_coding	Cell differentiation, Rcd1-like protein		Cell differentiation, Rcd1-like protein;(source:Araport11)
AT3G20720.1	protein_coding			amino-terminal region of chorein;(source:Araport11)
AT3G27090.1	protein_coding	DCD (Development and Cell Death) domain protein		DCD (Development and Cell Death) domain protein;(source:Araport11)
AT3G27020.1	protein_coding	YELLOW STRIPE like 6	Arabidopsis thaliana metal-nicotianamine transporter YSL6	YELLOW STRIPE like 6;(source:Araport11)
AT3G26980.1	protein_coding	membrane-anchored ubiquitin-fold protein 4 precursor		membrane-anchored ubiquitin-fold protein 4 precursor;(source:Araport11)
AT3G26940.1	protein_coding	Protein kinase superfamily protein	Receptor-like cytoplasmic kinase, RLCKVII subfamily. Overexpression causes abnormal differential and elongation growth after organ differentiation.	Protein kinase superfamily protein;(source:Araport11)
AT3G27030.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G26990.1	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT3G27100.1	protein_coding		ENY2 is a component of the deubiquitination module of the SAGA complex and is involved in the deubiquitination of histone 2B .	transcription/mRNA export factor;(source:Araport11)
AT3G27040.1	protein_coding	Meprin and TRAF (MATH) homology domain-containing protein		MATH domain/coiled-coil protein;(source:Araport11)
AT3G27000.1	protein_coding	actin related protein 2	encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. its transcript level is down regulated by light and is expressed in very low levels in all organs examined.	actin related protein 2;(source:Araport11)
AT3G27110.1	protein_coding	Peptidase family M48 family protein	PGM48 is a member of a plant specific clade of metallo-endopeptidase proteins. It is found in plastoglobules. Analysis of over-expression and loss of function phenotypes suggests PGM48 may have a role in positively regulating senescence.	Peptidase family M48 family protein;(source:Araport11)
AT3G27050.1	protein_coding			plant/protein;(source:Araport11)
AT3G27010.1	protein_coding	TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20	Belongs to a TCP protein transcription factor family. Members of this family contain a predicted basic-helix-loop-helix domain involved in DNA binding. Related to rice PCF1 and PCF2 genes. Binds to the GCCCR element of CYCB1;1. Involved in regulation of expression of cell cycle control and ribosomal protein genes.	TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20;(source:Araport11)
AT3G27120.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a conserved AAA-ATPase that acts as a negative regulator of meiotic CO formation.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G27060.1	protein_coding	Ferritin/ribonucleotide reductase-like family protein	Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP  biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.	Ferritin/ribonucleotide reductase-like family protein;(source:Araport11)
AT3G27070.1	protein_coding	translocase outer membrane 20-1	Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins	translocase outer membrane 20-1;(source:Araport11)
AT3G27080.1	protein_coding	translocase of outer membrane 20 kDa subunit 3	Component of the TOM complex  involved in transport of nuclear-encoded mitochondrial proteins	translocase of outer membrane 20 kDa subunit 3;(source:Araport11)
AT3G26950.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G26960.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT3G25860.1	protein_coding	2-oxoacid dehydrogenases acyltransferase family protein	Encodes the dihydrolipoamide S-acetyltransferase subunit of the plastid Pyruvate Dehydrogenase Complex (E2). Mutant has embryo defect.	2-oxoacid dehydrogenases acyltransferase family protein;(source:Araport11)
AT3G25950.1	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT3G26030.1	protein_coding	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta	protein phosphatase 2A regulatory subunit isoform B' delta The mRNA is cell-to-cell mobile.	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta;(source:Araport11)
AT3G25960.1	protein_coding	Pyruvate kinase family protein		Pyruvate kinase family protein;(source:Araport11)
AT3G26040.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G25880.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G25970.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G25870.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G25890.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. The mRNA is cell-to-cell mobile.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G26050.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family		TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT3G25900.1	protein_coding	Homocysteine S-methyltransferase family protein		Homocysteine S-methyltransferase family protein;(source:Araport11)
AT3G25980.1	protein_coding	DNA-binding HORMA family protein	Encodes MAD2 (MITOTIC ARREST-DEFICIENT 2). May have the spindle assembly checkpoint protein functions conserved from yeast to humans.	DNA-binding HORMA family protein;(source:Araport11)
AT3G25990.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G26060.1	protein_coding	Thioredoxin superfamily protein	encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus	Thioredoxin superfamily protein;(source:Araport11)
AT3G25910.1	protein_coding	Protein of unknown function (DUF1644)	C2H2-type zinc finger protein involved in salt tolerance. Induced by salt stress.	MAP kinase kinase kinase, putative (DUF1644);(source:Araport11)
AT3G26000.1	protein_coding	Ribonuclease inhibitor	RIPF1 is an F-Box E3 ligase that interacts with the ABA receptor RCAR3 and appears to be responsible for facilitating its turnover.	Ribonuclease inhibitor;(source:Araport11)
AT3G26070.1	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT3G25920.1	protein_coding	ribosomal protein L15	encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex	ribosomal protein L15;(source:Araport11)
AT3G26010.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G26080.1	protein_coding	plastid-lipid associated protein PAP / fibrillin family protein		plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT3G25930.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G26020.1	protein_coding	Protein phosphatase 2A regulatory B subunit family protein	Encodes protein phosphatase 2A (PP2A) B'eta subunit.  Targeted to nucleus and cytosol.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT3G26090.1	protein_coding	G-protein coupled receptors;GTPase activators	Encodes AtRGS1, a putative membrane receptor for D-glucose.  Also functions as a regulator of G-protein signaling.  Has GTPase-accelerating activity.  Regulates the activity of AtGPA1. Lines over-expressing the gene are more tolerant to dehydration and root elongation. These phenotypes are dependent on ABA.  Nuclear localization of the protein is dependent on ABA. RGS1 endocytosis is induced by JA which promotes its dissociation from GPA1.	REGULATOR OF G-PROTEIN SIGNALING 1;(source:Araport11)
AT3G25940.1	protein_coding	TFIIB zinc-binding protein		TFIIB zinc-binding protein;(source:Araport11)
AT3G26100.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G26110.1	protein_coding	Anther-specific protein agp1-like		Anther-specific protein agp1-like protein;(source:Araport11)
AT3G19860.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G19940.1	protein_coding	Major facilitator superfamily protein	Encodes a hexose-H(+) symporter that catalyzes the high-affinity uptake of glucose, galactose and mannose that is induced under low-glucose conditions in pollen tubes.	Major facilitator superfamily protein;(source:Araport11)
AT3G19870.1	protein_coding			AP-5 complex subunit beta-like protein;(source:Araport11)
AT3G19950.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G19880.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G19890.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G19800.1	protein_coding	Protein of unknown function (DUF177)	Encodes the DUF177B version of the two DUF177 proteins in Arabidopsis.  This version differs from DUF177A in containing a 23 aa insertion compared to the DUF177A sequence.	E3 ubiquitin-protein ligase, putative (DUF177);(source:Araport11)
AT3G19900.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G19810.1	protein_coding	Protein of unknown function (DUF177)		BTB/POZ domain protein, putative (DUF177);(source:Araport11)
AT3G19910.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G19820.1	protein_coding	cell elongation protein / DWARF1 / DIMINUTO (DIM)	Involved in the conversion of the early brassinosteroid precursor  24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype.  DWF1 is a Ca2+-dependent calmodulin-binding protein.	cell elongation protein / DWARF1 / DIMINUTO (DIM);(source:Araport11)
AT3G19920.1	protein_coding			BTB/POZ domain protein;(source:Araport11)
AT3G19930.1	protein_coding	sugar transporter 4	Encodes a sucrose hydrogen symporter that is induced by wounding. The mRNA is cell-to-cell mobile.	sugar transporter 4;(source:Araport11)
AT3G19830.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G19840.1	protein_coding	pre-mRNA-processing protein 40C	Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold  for RNA processing machineries.	pre-mRNA-processing protein 40C;(source:Araport11)
AT3G19850.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G20260.1	protein_coding	Protein of unknown function (DUF1666)		DUF1666 family protein (DUF1666);(source:Araport11)
AT3G20350.1	protein_coding			actin cytoskeleton-regulatory complex pan-like protein;(source:Araport11)
AT3G20430.1	protein_coding			phosphorylated adapter RNA export-like protein;(source:Araport11)
AT3G20360.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G20270.1	protein_coding	lipid-binding serum glycoprotein family protein	Encodes one of the two LBP/BPI related proteins (AT1G04970/LBR-1, AT3G20270/LBR-2) that bind to LPS directly and regulate PR1 expression.	lipid-binding serum glycoprotein family protein;(source:Araport11)
AT3G20310.1	protein_coding	ethylene response factor 7	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box–mediated transcription together with AtSin3 and HDA19.	ethylene response factor 7;(source:Araport11)
AT3G20370.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G20440.1	protein_coding	Alpha amylase family protein	Encodes BE1, a putative glycoside hydrolase. Involved in organogenesis and somatic embryogenesis by regulating carbohydrate metabolism. Mutation in BE1 has pleotrophic effect on the whole plant development.	Alpha amylase family protein;(source:Araport11)
AT3G20320.1	protein_coding	trigalactosyldiacylglycerol2	Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	trigalactosyldiacylglycerol2;(source:Araport11)
AT3G20380.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G20450.1	protein_coding	B-cell receptor-associated protein 31-like 		B-cell receptor-associated protein 31-like protein;(source:Araport11)
AT3G20330.1	protein_coding	PYRIMIDINE B	encodes aspartate carbamoyltransferase catalyzing the second step in the de novo pyrimidine ribonucleotide biosynthesis	PYRIMIDINE B;(source:Araport11)
AT3G20390.1	protein_coding	endoribonuclease L-PSP family protein	Encodes a plastidial RidA (Reactive Intermediate Deaminase A) homolog that hydrolyzes the enamines/imines formed by Thr dehydratase from Ser or Thr. RidA accelerates the deamination of reactive enamine/imine intermediates produced by threonine dehydratase (At3g10050) with threonine or serine as substrates. In the absence of RidA, the serine-derived imine inactivates BCAT3 (At3g49680). RidA thus pre-empts damage to BCAT3 by hydrolyzing the reactive imine before it does damage.	endoribonuclease L-PSP family protein;(source:Araport11)
AT3G20460.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G20340.1	protein_coding		Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.	protein expression protein;(source:Araport11)
AT3G20400.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G20470.1	protein_coding	glycine-rich protein 5	encodes a glycine-rich protein that is expressed more abundantly in immature seed pods than in stems and leaves. Expression is not detected in roots or flowers.	glycine-rich protein 5;(source:Araport11)
AT3G20410.1	protein_coding	calmodulin-domain protein kinase 9	calmodulin-domain protein kinase CDPK isoform 9 (CPK9)	calmodulin-domain protein kinase 9;(source:Araport11)
AT3G20420.1	protein_coding	RNAse THREE-like protein 2	double-stranded RNA binding / ribonuclease III. Required for 3' external transcribed spacer (ETS) cleavage of the pre-rRNA in vivo. Localizes in the nucleus and  cytoplasm.	RNAse THREE-like protein 2;(source:Araport11)
AT3G20280.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G20290.1	protein_coding	EPS15 homology domain 1	Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520).	EPS15 homology domain 1;(source:Araport11)
AT3G20300.1	protein_coding	Protein of unknown function (DUF3537)		extracellular ligand-gated ion channel protein (DUF3537);(source:Araport11)
AT3G12440.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G12450.1	pseudogene		pseudogene of 3'-5' exonuclease containing protein	pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT3G12380.1	protein_coding	actin-related protein 5	Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family.	actin-related protein 5;(source:Araport11)
AT3G12460.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G12390.1	protein_coding	Nascent polypeptide-associated complex (NAC), alpha subunit family protein		Nascent polypeptide-associated complex (NAC), alpha subunit family protein;(source:Araport11)
AT3G12340.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein		FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G12470.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G12400.1	protein_coding	Ubiquitin-conjugating enzyme/RWD-like protein	Mutants of this gene were initially identified because of the trichome morphogenesis phenotype. Those trichomes have multiple nuclei, a defect that turns out not to be restricted to the trichomes but also in all endoreduplicating cell types. This gene encodes a ubiquitin-binding protein with sequence similarities with yeast proteins that are components of the ESCRTI-III complexes. The Arabidopsis protein is found associated with the endosome.	Ubiquitin-conjugating enzyme/RWD-like protein;(source:Araport11)
AT3G12410.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G12350.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G12490.1	protein_coding	cystatin B	Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmotic, cold stress).	cystatin B;(source:Araport11)
AT3G12420.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G12500.1	protein_coding	basic chitinase	encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.	basic chitinase;(source:Araport11)
AT3G12430.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G12510.1	protein_coding	MADS-box family protein		MADS-box family protein;(source:Araport11)
AT3G12520.1	protein_coding	sulfate transporter 4;2	Encodes a sulfate transporter that in induced under sulfate limitation.	sulfate transporter 4;(source:Araport11)
AT3G12360.1	protein_coding	Ankyrin repeat family protein	Encodes a protein with an ankyrin motif and transmembrane domains that is involved in salt tolerance. Expressed throughout the plant and localized to the plasma membrane. Loss of function mutations show an increased tolerance to salt based on assaying seedling growth in the presence of salt. In the mutants, induction of genes required for production of reactive oxygen species is reduced suggesting that itn1 promotes ROS production.  It interacts with RCN1 in vivo and may regulate its subcellular localization. The mRNA is cell-to-cell mobile.	Ankyrin repeat family protein;(source:Araport11)
AT3G12370.1	protein_coding	Ribosomal protein L10 family protein		Ribosomal protein L10 family protein;(source:Araport11)
AT3G15570.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G15580.1	protein_coding	Ubiquitin-like superfamily protein	Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition.	Ubiquitin-like superfamily protein;(source:Araport11)
AT3G15590.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G15600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07770.1);(source:TAIR10)
AT3G30520.1	protein_coding			heat shock protein;(source:Araport11)
AT3G30590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24910.1);(source:TAIR10)
AT3G30530.1	protein_coding	basic leucine-zipper 42		basic leucine-zipper 42;(source:Araport11)
AT3G30600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30470.1);(source:TAIR10)
AT3G30610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12685.1);(source:TAIR10)
AT3G30540.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT3G30620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila);(source:TAIR10)
AT3G30550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07450.1);(source:TAIR10)
AT3G30630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-300 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30560.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT1G35940.1);(source:TAIR10)
AT3G30640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G24930.1);(source:TAIR10)
AT3G30570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.9e-38 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G30580.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G30650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10175.1);(source:TAIR10)
AT3G26920.1	protein_coding	FBD / Leucine Rich Repeat domains containing protein		FBD / Leucine Rich Repeat domains containing protein;(source:Araport11)
AT3G26930.1	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT3G18090.1	protein_coding	nuclear RNA polymerase D2B	Encodes a subunit of RNA polymerase IV (aka RNA polymerase D). NRPD2b is closely related to NRPD2a, but has lower levels of transcription and does not affect endogenous siRNA when mutated.	nuclear RNA polymerase D2B;(source:Araport11)
AT3G18100.1	protein_coding	myb domain protein 4r1	Member of the R2R3 transcription factor gene family.	myb domain protein 4r1;(source:Araport11)
AT3G18120.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G18190.1	protein_coding	TCP-1/cpn60 chaperonin family protein		TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT3G18200.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G18130.1	protein_coding	receptor for activated C kinase 1C	Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1C has no phenotype on its own and probably acts redundantly with RACK1A and RACK1B.	receptor for activated C kinase 1C;(source:Araport11)
AT3G18110.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G18040.1	protein_coding	MAP kinase 9	Encodes a protein with similarity to MAP kinases (MAPK9).Expressed preferentially in guard cells and appears to be involved in reactive oxygen species mediated ABA signaling.	MAP kinase 9;(source:Araport11)
AT3G18140.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes LST8-1, involved in regulating amino acid accumulation and the synthesis of myo-inositol and raffinose during plant adaptation to long days.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G18210.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620), participates in epigenetic repression of flowering genes, works redundantly with ICU11 to repress several members of the MADS-box transcription factors family, during vegetative development via histone modification.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G18050.1	protein_coding			GPI-anchored protein;(source:Araport11)
AT3G18150.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G18060.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G18160.1	protein_coding	peroxin 3-1		peroxin 3-1;(source:Araport11)
AT3G18070.1	protein_coding	beta glucosidase 43		beta glucosidase 43;(source:Araport11)
AT3G18170.1	protein_coding	Glycosyltransferase family 61 protein		Glycosyltransferase family 61 protein;(source:Araport11)
AT3G18180.1	protein_coding	Glycosyltransferase family 61 protein		Glycosyltransferase family 61 protein;(source:Araport11)
AT3G18080.1	protein_coding	B-S glucosidase 44		B-S glucosidase 44;(source:Araport11)
AT3G29060.1	protein_coding	EXS (ERD1/XPR1/SYG1) family protein		EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT3G29070.1	protein_coding	emp24/gp25L/p24 family/GOLD family protein		emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT3G29040.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory protein, putative (DUF26);(source:Araport11)
AT3G29050.1	protein_coding	receptor-like protein kinase-related		receptor-like protein kinase-like protein;(source:Araport11)
AT3G13380.1	protein_coding	BRI1-like 3	Similar to BRI, brassinosteroid receptor protein.	BRI1-like 3;(source:Araport11)
AT3G13460.1	protein_coding	evolutionarily conserved C-terminal region 2	Physically interacts with CIPK1.	evolutionarily conserved C-terminal region 2;(source:Araport11)
AT3G13540.1	protein_coding	myb domain protein 5	Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).	myb domain protein 5;(source:Araport11)
AT3G13470.1	protein_coding	TCP-1/cpn60 chaperonin family protein	Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins.  Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).	TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT3G13550.1	protein_coding	Ubiquitin-conjugating enzyme family protein	Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark.	Ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT3G13450.1	protein_coding	Transketolase family protein	branched chain alpha-keto acid dehydrogenase E1 beta	Transketolase family protein;(source:Araport11)
AT3G13480.1	protein_coding			nuclear polyadenylated RNA-binding protein;(source:Araport11)
AT3G13390.1	protein_coding	SKU5  similar 11		SKU5 similar 11;(source:Araport11)
AT3G13490.1	protein_coding	Lysyl-tRNA synthetase, class II	Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast.  Plants mutated in this gene exhibit an ovule abortion phenotype.	Lysyl-tRNA synthetase, class II;(source:Araport11)
AT3G13560.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT3G13500.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G13400.1	protein_coding	SKU5  similar 13		SKU5 similar 13;(source:Araport11)
AT3G13510.1	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal peptidase, putative (DUF239);(source:Araport11)
AT3G13410.1	protein_coding			2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;(source:Araport11)
AT3G13520.1	protein_coding	arabinogalactan protein 12	Encodes a GPI-anchored arabinogalactan (AG) peptide with a short 'classical' backbone of 10 amino acids, seven of which are conserved among the 4 other Arabidopsis AG peptides.  These peptides may be involved in cell signaling.	arabinogalactan protein 12;(source:Araport11)
AT3G13420.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G13530.1	protein_coding	mitogen-activated protein kinase kinase kinase 7	MAP3K epsilon protein kinase 1 is functionally redundant with MAP3Ke2. Required  for pollen development but not essential. map3ke1;map3ke2 double-mutant pollen grains develop plasma membrane irregularities following  pollen mitosis I. Localized primarily in the plasma membrane. Expressed in leaf trichomes, root columella cells and developing ovules.	mitogen-activated protein kinase kinase kinase 7;(source:Araport11)
AT3G13430.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G13440.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G13445.1	protein_coding	TATA binding protein 1	TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complex	TATA binding protein 1;(source:Araport11)
AT3G21030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.4e-16 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G21040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.7e-20 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G21060.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a structural core component of a COMPASS-like H3K4 histone methylation complex that is also involved in the timing of the floral transition.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G21070.1	protein_coding	NAD kinase 1	Encodes a protein with NAD(H) kinase activity.	NAD kinase 1;(source:Araport11)
AT3G21150.1	protein_coding	B-box 32	Encodes a protein with a B-box domain predicted to act as a transcription factor. Expression of the BBX32 gene is affected by monochromatic red light. Genetic analysis shows BBX32 is under circadian control; it is a morning gene under clock regulation.	B-box 32;(source:Araport11)
AT3G21080.1	protein_coding	ABC transporter-related		ABC transporter-like protein;(source:Araport11)
AT3G20980.1	protein_coding	Gag-Pol-related retrotransposon family protein		Gag-Pol-related retrotransposon family protein;(source:Araport11)
AT3G21050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.8e-18 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G21090.1	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT3G21160.1	protein_coding	alpha-mannosidase 2	Encodes an alpha-mannosidase I enzyme responsible for N-glycan maturation.	alpha-mannosidase 2;(source:Araport11)
AT3G21100.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G21110.1	protein_coding	purin 7	5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.	purin 7;(source:Araport11)
AT3G20990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.9e-07 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G21120.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G21000.1	protein_coding	Gag-Pol-related retrotransposon family protein		Gag-Pol-related retrotransposon family protein;(source:Araport11)
AT3G21130.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G21010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.6e-15 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT3G21140.1	protein_coding	Pyridoxamine 5'-phosphate oxidase family protein		Pyridoxamine 5-phosphate oxidase family protein;(source:Araport11)
AT3G21020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.4e-14 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G21700.1	protein_coding	Ras-related small GTP-binding family protein	Monomeric G protein. Expressed in root epidermal cells that are destined to become atrichoblasts. Also expressed during pollen development and in the pollen tube tip.	Ras-related small GTP-binding family protein;(source:Araport11)
AT3G21790.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G21865.1	protein_coding	peroxin 22	Interacts with PEX4 in a yeast two-hybrid. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes.	peroxin 22;(source:Araport11)
AT3G21800.1	protein_coding	UDP-glucosyl transferase 71B8		UDP-glucosyl transferase 71B8;(source:Araport11)
AT3G21710.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G21810.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT3G21720.1	protein_coding	isocitrate lyase	Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).	isocitrate lyase;(source:Araport11)
AT3G21730.1	protein_coding	Dihydroneopterin aldolase		Dihydroneopterin aldolase;(source:Araport11)
AT3G21820.1	protein_coding	histone-lysine N-methyltransferase ATXR2		histone-lysine N-methyltransferase ATXR2;(source:Araport11)
AT3G21830.1	protein_coding	SKP1-like 8		SKP1-like 8;(source:Araport11)
AT3G21740.1	protein_coding	Arabidopsis thaliana protein of unknown function (DUF794)	ACCUMULATION OF PHOTOSYSTEM ONE 4	APO RNA-binding protein (DUF794);(source:Araport11)
AT3G21840.1	protein_coding	SKP1-like 7		SKP1-like 7;(source:Araport11)
AT3G21750.1	protein_coding	UDP-glucosyl transferase 71B1	Encodes a glucosyltransferase that can attach glucose to a number of hydroxylated phenolic compounds as well as quercetins in vitro	UDP-glucosyl transferase 71B1;(source:Araport11)
AT3G21850.1	protein_coding	SKP1-like 9	one of Arabidopsis SKP1 homologues	SKP1-like 9;(source:Araport11)
AT3G21760.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes HYR1, a UDP glycosyltransferase (UGT).  HYR1 glucosylates hypostatin, an inhibitor of cell expansion in vivo to form a bioactive glucoside.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G21860.1	protein_coding	SKP1-like 10		SKP1-like 10;(source:Araport11)
AT3G21770.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT3G21780.1	protein_coding	UDP-glucosyl transferase 71B6	Encodes a protein with UDP-glucosyl transferase activity that was shown to preferentially glucosylates abscisic acid (ABA), and not its catabolites. Moreover, UGT71B6 was shown to have a strict preference for the naturally-occurring ABA enantiomer, (+)-ABA, and not its 'unnatural' relative, (-)-ABA. This is in contrast to the other identified UGT genes catalyzing the glucosylation of ABA which were shown to accept both stereoisomers as substrates.	UDP-glucosyl transferase 71B6;(source:Araport11)
AT3G24660.1	protein_coding	transmembrane kinase-like 1	member of Receptor kinase-like protein family	transmembrane kinase-like 1;(source:Araport11)
AT3G24690.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G24670.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G24710.1	protein_coding			NADPH-dependent diflavin oxidoreductase;(source:Araport11)
AT3G24700.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G24715.1	protein_coding	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain	HCR1 belongs to the B4 group of Raf-like MAPKKKs. It corresponds to a root hydraulic pressure QTL between Col-0 and Bur-0 accessions and appears to contribute to variation in root pressure in different haplotypes. It is involved in potassium-dependent response to hypoxia.	kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT3G24680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT2G15520.1);(source:TAIR10)
AT3G24630.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G24640.1	protein_coding	lyases		lyase;(source:Araport11)
AT3G24650.1	protein_coding	AP2/B3-like transcriptional factor family protein	Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. ABI3 is a central regulator in ABA signaling and is unstable in vivo.  It interacts with and can by polyubiquitinated by AIP2 in vivo. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.  Alternative splicing of ABI3 is developmentally regulated by SUA (AT3G54230).	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G15610.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G15780.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G15700.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G15790.1	protein_coding	methyl-CPG-binding domain 11	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain 11;(source:Araport11)
AT3G15710.1	protein_coding	Peptidase S24/S26A/S26B/S26C family protein		Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT3G15870.1	protein_coding	Fatty acid desaturase family protein		Fatty acid desaturase family protein;(source:Araport11)
AT3G15720.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G15620.1	protein_coding	DNA photolyase family protein	Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.	DNA photolyase family protein;(source:Araport11)
AT3G15880.1	protein_coding	WUS-interacting protein 2		WUS-interacting protein 2;(source:Araport11)
AT3G15730.1	protein_coding	phospholipase D alpha 1	Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements.  PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis. The mRNA is cell-to-cell mobile.	phospholipase D alpha 1;(source:Araport11)
AT3G15800.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT3G15690.1	protein_coding	Single hybrid motif superfamily protein		Single hybrid motif superfamily protein;(source:Araport11)
AT3G15810.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT3G15630.1	protein_coding			plant/protein;(source:Araport11)
AT3G15740.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G15820.1	protein_coding	phosphatidic acid phosphatase-related / PAP2-related	Functions as phosphatidylcholine:diacylglycerol cholinephosphotransferase, a major reaction for the transfer of 18:1 into phosphatidylcholine for desaturation  and also for the reverse transfer of 18:2 and 18:3 into the triacylglycerols  synthesis pathway	phosphatidic acid phosphatase-related / PAP2-like protein;(source:Araport11)
AT3G15750.1	protein_coding	Essential protein Yae1, N-terminal		Essential protein Yae1, N-terminal;(source:Araport11)
AT3G15640.1	protein_coding	Rubredoxin-like superfamily protein		Rubredoxin-like superfamily protein;(source:Araport11)
AT3G15830.1	protein_coding	phosphatidic acid phosphatase-related / PAP2-related		phosphatidic acid phosphatase-related / PAP2-like protein;(source:Araport11)
AT3G15760.1	protein_coding			cytochrome P450 family protein;(source:Araport11)
AT3G15650.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G15840.1	protein_coding	post-illumination chlorophyll fluorescence increase	Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.	post-illumination chlorophyll fluorescence increase;(source:Araport11)
AT3G15770.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15660.1	protein_coding	glutaredoxin 4		glutaredoxin 4;(source:Araport11)
AT3G15850.1	protein_coding	fatty acid desaturase 5	Chloroplastic enzyme responsible for the synthesis of 16:1 fatty acids from galactolipids and sulpholipids. Uses ferredoxin as electron donor. The mRNA is cell-to-cell mobile.	fatty acid desaturase 5;(source:Araport11)
AT3G15670.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT3G15860.1	protein_coding			plant self-incompatibility protein S1 family protein;(source:Araport11)
AT3G15680.1	protein_coding	Ran BP2/NZF zinc finger-like superfamily protein		Ran BP2/NZF zinc finger-like superfamily protein;(source:Araport11)
AT3G30430.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G30480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24915.1);(source:TAIR10)
AT3G30460.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G30490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24910.1);(source:TAIR10)
AT3G30500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07690.1);(source:TAIR10)
AT3G30470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35030.1);(source:TAIR10)
AT3G30440.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1);(source:TAIR10)
AT3G30450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G47270.1);(source:TAIR10)
AT3G15970.1	protein_coding	NUP50 (Nucleoporin 50 kDa) protein		NUP50 (Nucleoporin 50 kDa) protein;(source:Araport11)
AT3G16140.1	protein_coding	photosystem I subunit H-1	Encodes subunit H of photosystem I reaction center subunit VI.	photosystem I subunit H-1;(source:Araport11)
AT3G16060.1	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT3G16150.1	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	Encodes an asparaginase that catalyzes the degradation of L-asparagine to L-aspartic acid and ammonia. The mRNA is cell-to-cell mobile.	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT3G16070.1	protein_coding			LOW protein: ATP-dependent RNA helicase-like protein;(source:Araport11)
AT3G16030.1	protein_coding	lectin protein kinase family protein		lectin protein kinase family protein;(source:Araport11)
AT3G15980.1	protein_coding	Coatomer, beta' subunit		Coatomer, beta subunit;(source:Araport11)
AT3G16080.1	protein_coding	Zinc-binding ribosomal protein family protein		Zinc-binding ribosomal protein family protein;(source:Araport11)
AT3G16040.1	protein_coding	Translation machinery associated TMA7		Translation machinery associated TMA7;(source:Araport11)
AT3G16160.1	protein_coding	Tesmin/TSO1-like CXC domain-containing protein		Tesmin/TSO1-like CXC domain-containing protein;(source:Araport11)
AT3G16090.1	protein_coding	RING/U-box superfamily protein	Encodes one of the Arabidopsis homologs of the yeast/human Hrd1 protein: AT3G16090 (Hrd1A), AT1G65040 (Hrd1B). Involved in ERAD (Endoplasmic reticulum-associated degradation).	RING/U-box superfamily protein;(source:Araport11)
AT3G16050.1	protein_coding	pyridoxine biosynthesis 1.2	Encodes a protein with pyridoxal phosphate synthase activity whose transcripts were detected mostly in roots and accumulate during senescence. The protein was found in very low abundance, which prevented a specific localisation.	pyridoxine biosynthesis 1.2;(source:Araport11)
AT3G16170.1	protein_coding	AMP-dependent synthetase and ligase family protein	Encodes a malonyl-CoA synthetase that is localized to the cytosol and mitochondrion. AAE13 produces two transcripts one of which includes an N terminal mitochondrial targeting motif. Loss of function of the mtAAE13 product results in growth arrest and lethality.	AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT3G16100.1	protein_coding	RAB GTPase homolog G3C		RAB GTPase homolog G3C;(source:Araport11)
AT3G16180.1	protein_coding	Major facilitator superfamily protein	Encodes a low affinity nitrate transporter that is expressed in the plasma membrane and found in the phloem of the major veins of leaves.  It is responsible for nitrate redistribution to young leaves.	Major facilitator superfamily protein;(source:Araport11)
AT3G16110.1	protein_coding	PDI-like 1-6	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).	PDI-like 1-6;(source:Araport11)
AT3G15990.1	protein_coding	sulfate transporter 3;4	Encodes sulfate transporter Sultr3;4.	sulfate transporter 3;(source:Araport11)
AT3G16120.1	protein_coding	Dynein light chain type 1 family protein		Dynein light chain type 1 family protein;(source:Araport11)
AT3G16000.1	protein_coding	MAR binding filament-like protein 1	Encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes.MFP1 is required for the normal initiation of starch granules in Arabidopsis chloroplasts. Mutants lacking MFP1 have fewer starch granules per chloroplast relative to wild-type plants. MFP1 interacts with PTST2 (At1g27070), which is also involved in starch granule initiation. MFP1 is required for proper PTST2 location within the chloroplast.	MAR binding filament-like protein 1;(source:Araport11)
AT3G16130.1	protein_coding	RHO guanyl-nucleotide exchange factor 13	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 13;(source:Araport11)
AT3G16010.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein	Pentatricopeptide Repeat Protein involved in splicing of nad4, nad 5 and nad2 introns which affects biogenesis of the respiratory complex I.	Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT3G16020.1	protein_coding	F-box associated ubiquitination effector protein		F-box associated ubiquitination effector protein;(source:Araport11)
AT3G26150.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 16	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 16;(source:Araport11)
AT3G26250.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G26160.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 17	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 17;(source:Araport11)
AT3G26260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1);(source:TAIR10)
AT3G26170.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 19	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 19;(source:Araport11)
AT3G26180.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 20	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 20;(source:Araport11)
AT3G26200.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 22	putative cytochrome P450 The mRNA is cell-to-cell mobile.	cytochrome P450, family 71, subfamily B, polypeptide 22;(source:Araport11)
AT3G26270.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 25	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 25;(source:Araport11)
AT3G26210.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 23	putative cytochrome P450 The mRNA is cell-to-cell mobile.	cytochrome P450, family 71, subfamily B, polypeptide 23;(source:Araport11)
AT3G26280.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 4	cytochrome P450 monooxygenase	cytochrome P450, family 71, subfamily B, polypeptide 4;(source:Araport11)
AT3G26190.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 21	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 21;(source:Araport11)
AT3G26220.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 3	cytochrome P450 monooxygenase	cytochrome P450, family 71, subfamily B, polypeptide 3;(source:Araport11)
AT3G26130.1	protein_coding	Cellulase (glycosyl hydrolase family 5) protein		Cellulase (glycosyl hydrolase family 5) protein;(source:Araport11)
AT3G26230.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 24	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 24;(source:Araport11)
AT3G26290.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 26	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 26;(source:Araport11)
AT3G26240.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein	Cysteine/Histidine-rich C1 domain family protein. Accumulation of this protein is regulated by a cis-Natural Antisense RNA (cis-NAT).	Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G26140.1	protein_coding	Cellulase (glycosyl hydrolase family 5) protein		Cellulase (glycosyl hydrolase family 5) protein;(source:Araport11)
AT3G17420.1	protein_coding	glyoxysomal protein kinase 1	Serine/threonine protein kinase-like protein expressed in etiolated cotyledons and found in glyoxysomes.	glyoxysomal protein kinase 1;(source:Araport11)
AT3G17430.1	protein_coding	Nucleotide-sugar transporter family protein	Nucleotide/sugar transporter family protein The mRNA is cell-to-cell mobile.	Nucleotide-sugar transporter family protein;(source:Araport11)
AT3G17440.1	protein_coding	novel plant snare 13	member of NPSN Gene Family	Putative plant snare 13;(source:Araport11)
AT3G17450.1	protein_coding	hAT dimerisation domain-containing protein		hAT dimerization domain-containing protein;(source:Araport11)
AT3G17460.1	protein_coding	PHD finger family protein		PHD finger family protein;(source:Araport11)
AT3G29590.1	protein_coding	HXXXD-type acyl-transferase family protein	At3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G29620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);transposase IS4 family protein,  contains Pfam profile: PF01609 transposase DDE domain;(source:TAIR10)
AT3G29600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54926.1);(source:TAIR10)
AT3G29630.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G29610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31406.1);(source:TAIR10)
AT3G29580.1	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain		MATH domain/coiled-coil protein;(source:Araport11)
AT3G16857.1	protein_coding	response regulator 1	Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Also involved in cytokinin-dependent inhibition of hypocotyl elongation and cytokinin-dependent greening and shooting in tissue culture. ARR1, ARR10, and ARR12 are redundant regulators of drought response, with ARR1 being the most critical. ARR1, ARR10 and ARR12 redundantly bind to the promoter of WUSCHEL (WUS), directly activate its transcription. In parallel, ARR1, ARR10 and ARR12 repress the expression of YUCCAs (YUCs), which encode a key enzyme for auxin biosynthesis, indirectly promoting WUS induction. The regulation of ARR1, ARR10 and ARR12 on WUS and YUCs is required for regeneration and maintenance of shoot meristem.	response regulator 1;(source:Araport11)
AT3G16860.1	protein_coding	COBRA-like protein 8 precursor		COBRA-like protein 8 precursor;(source:Araport11)
AT3G16870.1	protein_coding	GATA transcription factor 17	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 17;(source:Araport11)
AT3G16880.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G24170.1	protein_coding	glutathione-disulfide reductase	Encodes a cytosolic glutathione reductase.	glutathione-disulfide reductase;(source:Araport11)
AT3G24180.1	protein_coding	Beta-glucosidase, GBA2 type family protein		Beta-glucosidase, GBA2 type family protein;(source:Araport11)
AT3G24160.1	protein_coding	putative type 1 membrane protein	Encodes a putative Type 1 membrane protein (PMP).	putative type 1 membrane protein;(source:Araport11)
AT3G24190.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G24110.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G24100.1	protein_coding	Uncharacterised protein family SERF		Uncharacterized protein family SERF;(source:Araport11)
AT3G24120.1	protein_coding	Homeodomain-like superfamily protein	MYB-CC protein involved in regulation of response to phosphate starvation.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G24200.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT3G24130.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G24210.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT3G24140.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. It fulfills its role through recruitment of  the Arabidopsis Retinoblastoma homologue, RETINOBLASTOMA-RELATED (RBR). Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage.  It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell. Its transcript levels change after inducing MUTE expression in a mute background.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G24220.1	protein_coding	nine-cis-epoxycarotenoid dioxygenase 6	A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.	nine-cis-epoxycarotenoid dioxygenase 6;(source:Araport11)
AT3G24150.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G24230.1	protein_coding	Pectate lyase family protein		Pectate lyase family protein;(source:Araport11)
AT3G29470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04135.1);(source:TAIR10)
AT3G29460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.0e-34 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT3G29310.1	protein_coding	calmodulin-binding protein-related		calmodulin-binding protein-like protein;(source:Araport11)
AT3G29320.1	protein_coding	Glycosyl transferase, family 35	Encodes a plastidic alpha-glucan phosphorylase.  In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose. The mRNA is cell-to-cell mobile.	Glycosyl transferase, family 35;(source:Araport11)
AT3G29390.1	protein_coding	RS2-interacting KH protein	Nuclear localized K-homology containing protein that interacts with AS1.	RS2-interacting KH protein;(source:Araport11)
AT3G29330.1	protein_coding			zinc finger RNA-binding-like protein;(source:Araport11)
AT3G29400.1	protein_coding	exocyst subunit exo70 family protein E1	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein E1;(source:Araport11)
AT3G29340.1	protein_coding	zinc finger (C2H2 type) family protein		zinc finger (C2H2 type) family protein;(source:Araport11)
AT3G29410.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G29350.1	protein_coding	histidine-containing phosphotransmitter 2	Encodes AHP2, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function in His-to-Asp phosphorelay signal transduction and as redundant positive regulators of cytokinin signaling.  Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	histidine-containing phosphotransmitter 2;(source:Araport11)
AT3G29420.1	pseudogene	geranylgeranyl pyrophosphate synthase-related / GGPP synthetase-related / farnesyltranstransferase-related		pseudogene of geranylgeranyl pyrophosphate synthase 3;(source:Araport11)
AT3G29360.1	protein_coding	UDP-glucose 6-dehydrogenase family protein	Encodes one of four UDP-glucose dehydrogenase UGD) genes.  Mutation of this gene in combination with UGD3 leads to swollen plant cell walls and severe developmental defects associated with changes in pectic polysaccharides.	UDP-glucose 6-dehydrogenase family protein;(source:Araport11)
AT3G29430.1	protein_coding	Terpenoid synthases superfamily protein		Terpenoid synthases superfamily protein;(source:Araport11)
AT3G29440.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.9e-10 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT3G29370.1	protein_coding		Encodes a atypical member of the bHLH (basic helix-loop-helix) family transcriptional factors.	hypothetical protein;(source:Araport11)
AT3G29450.1	protein_coding	General transcription factor 2-related zinc finger protein		General transcription factor 2-related zinc finger protein;(source:Araport11)
AT3G29380.1	protein_coding	Cyclin-like family protein	Encodes a TFIIB-related protein expressed in the reproductive organs and seeds.  Loss-of-function specifically affects the development of the syncytial endosperm.  It is not required for RNA polymerase IV or V activities.	Cyclin-like family protein;(source:Araport11)
AT3G29180.1	protein_coding	Protein of unknown function (DUF1336)		DUF1336 family protein (DUF1336);(source:Araport11)
AT3G30400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-46 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.4e-26 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G30420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54430.1);(source:TAIR10)
AT3G15890.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G15900.1	protein_coding			homoserine O-acetyltransferase;(source:Araport11)
AT3G15910.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15920.1	protein_coding	Phox (PX) domain-containing protein		Phox (PX) domain-containing protein;(source:Araport11)
AT3G15930.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G15940.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G15950.1	protein_coding	DNA topoisomerase-related	Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants.  Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.	DNA topoisomerase-like protein;(source:Araport11)
AT3G15960.1	protein_coding	mismatched DNA binding;ATP binding		mismatched DNA binding / ATP binding protein;(source:Araport11)
AT3G18680.1	protein_coding	Amino acid kinase family protein	Encodes a functional UMP Kinase located in the plastid that binds to group II intron plastid transcription products. Mutants show decreased accumulation of target transcripts/proteins.	Amino acid kinase family protein;(source:Araport11)
AT3G18780.1	protein_coding	actin 2	Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs.	actin 2;(source:Araport11)
AT3G18690.1	protein_coding	MAP kinase substrate 1	Encodes a nuclear-localized member of a plant specific gene family involved in mediating responses to pathogens. Interacts with WRKY transcriptional regulators.	MAP kinase substrate 1;(source:Araport11)
AT3G18790.1	protein_coding			pre-mRNA-splicing factor ISY1-like protein;(source:Araport11)
AT3G18700.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G18710.1	protein_coding	plant U-box 29	Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.	plant U-box 29;(source:Araport11)
AT3G18650.1	protein_coding	AGAMOUS-like 103		AGAMOUS-like 103;(source:Araport11)
AT3G18740.1	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	The gene encodes a putative leucine-rich repeat (LRR)Receptor-like kinase (RLK).	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT3G18800.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G18750.1	protein_coding	with no lysine (K) kinase 6	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 6;(source:Araport11)
AT3G18810.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT3G18720.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G18760.1	protein_coding	Translation elongation  factor EF1B/ribosomal protein S6 family protein		Translation elongation factor EF1B/ribosomal protein S6 family protein;(source:Araport11)
AT3G18660.1	protein_coding	plant glycogenin-like starch initiation protein 1	Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.  Encodes a glucuronyltransferase responsible for the addition of GlcA residues onto xylan and for secondary wall deposition.	plant glycogenin-like starch initiation protein 1;(source:Araport11)
AT3G18730.1	protein_coding	tetratricopeptide repeat (TPR)-containing protein	Encodes a protein with an important role in cell division control and plant morphogenesis and may also play a role in genome maintenance.  May be involved in mitosis through interaction with TSA1. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis.	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G18770.1	protein_coding	Autophagy-related protein 13		Autophagy-related protein 13;(source:Araport11)
AT3G18820.1	protein_coding	RAB GTPase homolog G3F		RAB GTPase homolog G3F;(source:Araport11)
AT3G18830.1	protein_coding	polyol/monosaccharide transporter 5	This gene encodes a plasma membrane-localized polyol/cyclitol/monosaccharide-H+-symporter. The symporter is able to catalyze the energy-dependent membrane passage of a wide range of linear polyols (three to six carbon backbone), of cyclic polyols (<i>myo</i>-inositol), and of numerous monosaccharides, including pyranose ring-forming and furanose ring-forming hexoses and pentoses. This gene belongs to a monosaccharide transporter-like (MST-like) superfamily.	polyol/monosaccharide transporter 5;(source:Araport11)
AT3G18670.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT3G19100.1	protein_coding	Protein kinase superfamily protein	Encodes a protein kinase that positively regulates gibberellic acid (GA) signaling by inactivating the E3 ubiquitin ligase GARU. GARU  mediates ubiquitin-dependent degradation of GID1s, which are GA receptors.	Protein kinase superfamily protein;(source:Araport11)
AT3G19270.1	protein_coding	cytochrome P450, family 707, subfamily A, polypeptide 4	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family.	cytochrome P450, family 707, subfamily A, polypeptide 4;(source:Araport11)
AT3G19190.1	protein_coding	autophagy 2	Encodes autophagy-related 2 (ATG2). The mRNA is cell-to-cell mobile.	autophagy 2;(source:Araport11)
AT3G19200.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G19280.1	protein_coding	fucosyltransferase 11	Encodes a protein with core &#945;1,3-fucosyltransferase activity.	fucosyltransferase 11;(source:Araport11)
AT3G19210.1	protein_coding	homolog of RAD54	Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases.  Functions in DNA repair via homologous recombination.	DNA repair/recombination protein;(source:Araport11)
AT3G19120.1	protein_coding	PIF / Ping-Pong family of plant transposases		PIF / Ping-Pong family of plant transposase;(source:Araport11)
AT3G19220.1	protein_coding	protein disulfide isomerases	Encodes a zinc finger protein that is similar to a subgroup of DnaJ and is involved in cotyledon chloroplast biogenesis. Cyo1 is localized to the thylakoid membrane and has protein disulfide isomerase activity in vivo.Cyo1 is more highly expressed in light grown seedlings. Loss of function mutants have albino cotyledons and abnormal plastids.	protein disulfide isomerase;(source:Araport11)
AT3G19130.1	protein_coding	RNA-binding protein 47B	RBP47B, is a component of the stress granule proteome and interacts  with 2',3'-cAMP.	RNA-binding protein 47B;(source:Araport11)
AT3G19230.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G19140.1	protein_coding	RING/U-box superfamily protein	DAY NEUTRAL FLOWERING (DNF) is a membrane-bound E3 ligase involved in the regulation of flowering time in Arabidopsis. It negetively regulate the early flowering under Short Day condition.	RING/U-box superfamily protein;(source:Araport11)
AT3G19240.1	protein_coding	Vacuolar import/degradation, Vid27-related protein		Vacuolar import/degradation, Vid27-related protein;(source:Araport11)
AT3G19150.1	protein_coding	KIP-related protein 6	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division.  Binds to D type cyclins. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. KRP6 appears to be targeted for degradation by RHF1a and RHF2a to allow mitotic divisions during gametogenesis. In addition, KRP6 transcript levels rise prior to and drop following the meitotic divisions of gametogenesis. Elevated levels of KRP6 negatively affect plant development and fertility.	KIP-related protein 6;(source:Araport11)
AT3G19250.1	protein_coding	Protein of unknown function (DUF677)		transmembrane protein, putative (DUF677);(source:Araport11)
AT3G19160.1	protein_coding	ATP/ADP isopentenyltransferases	Encodes cytokinin synthase.	ATP/ADP isopentenyltransferase;(source:Araport11)
AT3G19260.1	protein_coding	LAG1 homologue 2	LAG1 homolog. Loss of function mutant is sensitive to AAL-toxin. LOH2 is presumed to function in sphingolipid metabolism. It encodes a ceramide synthase essential for production of  LCFA-ceramides (mainly C16).	LAG1 homologue 2;(source:Araport11)
AT3G19170.1	protein_coding	presequence protease 1	Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowers	presequence protease 1;(source:Araport11)
AT3G19180.1	protein_coding	paralog of ARC6	Encodes a chloroplast division factor located in the plastid inner envelope with its N-terminus exposed to the stroma.  PARC6 influences FtsZ assembly and is required for recruitment of PDV1 during chloroplast division.	plastid division protein;(source:Araport11)
AT3G29570.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G29575.1	protein_coding	ABI five binding protein 3		ABI five binding protein 3;(source:Araport11)
AT3G22700.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G22650.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G22750.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G22710.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G22830.1	protein_coding	heat shock transcription factor  A6B	member of Heat Stress Transcription Factor (Hsf) family	heat shock transcription factor A6B;(source:Araport11)
AT3G22760.1	protein_coding	Tesmin/TSO1-like CXC domain-containing protein	CXC domain containing TSO1-like protein 1. The gene is expressed in stamens, pollen mother cells, and immature ovules. Regulates fate transition and cell Divisions in the stomatal lineage.	Tesmin/TSO1-like CXC domain-containing protein;(source:Araport11)
AT3G22720.1	protein_coding	F-box and associated interaction domains-containing protein		F-box/associated interaction domain protein;(source:Araport11)
AT3G22840.1	protein_coding	Chlorophyll A-B binding family protein	Encodes an early light-inducible protein.	Chlorophyll A-B binding family protein;(source:Araport11)
AT3G22770.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G22780.1	protein_coding	Tesmin/TSO1-like CXC domain-containing protein	CHC protein involved in cell cycle progression (positive regulator).	Tesmin/TSO1-like CXC domain-containing protein;(source:Araport11)
AT3G22690.1	protein_coding		YS1 is a PPR protein involved in RNA editing of plastid encoded genes. Natural variation in this locus is associated with increased photosynthetic acclimation.	LOW protein: PPR containing-like protein;(source:Araport11)
AT3G22790.1	protein_coding	Kinase interacting (KIP1-like) family protein	Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells.  It binds filamentous actin and is localized to the plasma membrane and plasmodesmata.	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT3G22660.1	protein_coding	rRNA processing protein-related		rRNA processing protein-like protein;(source:Araport11)
AT3G22800.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G22670.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G22680.1	protein_coding	RNA-DIRECTED DNA METHYLATION 1	Encodes RNA-DIRECTED DNA METHYLATION 1 (RDM1), forming a complex with DMS3 (AT3G49250) and DRD1 (AT2G16390).  This complex is termed DDR.  The DDR complex is required for polymerase V transcripts and RNA-directed DNA methylation.	RNA-DIRECTED DNA METHYLATION 1;(source:Araport11)
AT3G22640.1	protein_coding	cupin family protein		cupin family protein;(source:Araport11)
AT3G22730.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G22810.1	protein_coding	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region	FORKED-LIKE family member, part of Group 1 (FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT3G22740.1	protein_coding	homocysteine S-methyltransferase 3	homocysteine S-methyltransferase (HMT3)	homocysteine S-methyltransferase 3;(source:Araport11)
AT3G22820.1	protein_coding	allergen-related		allergen-like protein;(source:Araport11)
AT3G25440.1	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain protein		RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT3G25550.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G25450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.7e-211 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G25460.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G25400.1	protein_coding			dCTP pyrophosphatase-like protein;(source:Araport11)
AT3G25560.1	protein_coding	NSP-interacting kinase 2		NSP-interacting kinase 2;(source:Araport11)
AT3G25490.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT3G25570.1	protein_coding	Adenosylmethionine decarboxylase family protein		Adenosylmethionine decarboxylase family protein;(source:Araport11)
AT3G25470.1	protein_coding	bacterial hemolysin-related		bacterial hemolysin-like protein;(source:Araport11)
AT3G25410.1	protein_coding	Sodium Bile acid symporter family		Sodium Bile acid symporter family;(source:Araport11)
AT3G25480.1	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein		Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT3G25500.1	protein_coding	formin homology 1	Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton.  AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event.	formin homology 1;(source:Araport11)
AT3G25510.1	protein_coding	disease resistance protein (TIR-NBS-LRR class), putative		disease resistance protein (TIR-NBS-LRR class) family protein;(source:Araport11)
AT3G25580.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT3G25520.1	protein_coding	ribosomal protein L5	Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.	ribosomal protein L5;(source:Araport11)
AT3G25530.1	protein_coding	glyoxylate reductase 1	Encodes gamma-hydroxybutyrate dehydrogenase (AtGHBDH).  Contains a NADP-binding domain.  GHBDH is proposed to function in oxidative stress tolerance.	glyoxylate reductase 1;(source:Araport11)
AT3G25420.1	protein_coding	serine carboxypeptidase-like 21		serine carboxypeptidase-like 21;(source:Araport11)
AT3G25540.1	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	Encodes a ceramide synthase that together with LOH3 is essential for production of ceramides containing Very Long Chain Fatty acid VLCFA-Ceramides(mainly C 22 to 26).	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT3G25430.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G22980.1	protein_coding	Ribosomal protein S5/Elongation factor G/III/V family protein		Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT3G23000.1	protein_coding	CBL-interacting protein kinase 7	Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2. The mRNA is cell-to-cell mobile.	CBL-interacting protein kinase 7;(source:Araport11)
AT3G23070.1	protein_coding	CRM family member 3A	Encodes a CRM domain protein CFM3a, involved in group IIB intron splicing in chloroplasts.	CRM family member 3A;(source:Araport11)
AT3G23010.1	protein_coding	receptor like protein 36		receptor like protein 36;(source:Araport11)
AT3G23080.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT3G23020.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G23030.1	protein_coding	indole-3-acetic acid inducible 2	auxin inducible gene expressed in the nucleus	indole-3-acetic acid inducible 2;(source:Araport11)
AT3G23090.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family	Member of the microtubule regulatory protein WVD2/WDL family WDL3 stabilizes cortical microtubules and  is involved in light induced hypocotyl elongation. WDL3 is ubiquinated by COP1, leading to its degadation in the dark,	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT3G23100.1	protein_coding	homolog of human DNA ligase iv-binding protein XRCC4	A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. Yeast two-hybrid analysis demonstrated a strong interaction between A. thaliana DNA ligase IV and the A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. This interaction is shown to be mediated via the tandem BRCA C-terminal domains of A. thaliana DNA ligase IV protein.	DNA ligase IV-binding protein;(source:Araport11)
AT3G23050.1	protein_coding	indole-3-acetic acid 7	Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. Pseudomonas syringae type III effector AvrRpt2 stimulates AXR2 protein turnover.	indole-3-acetic acid 7;(source:Araport11)
AT3G23110.1	protein_coding	receptor like protein 37		receptor like protein 37;(source:Araport11)
AT3G23060.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G23120.1	protein_coding	receptor like protein 38		receptor like protein 38;(source:Araport11)
AT3G22990.1	protein_coding	ARM repeat superfamily protein	Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues. LFR is functionally associated with AS2 to mediate leaf development.	ARM repeat superfamily protein;(source:Araport11)
AT3G29130.1	protein_coding			kxDL motif protein;(source:Araport11)
AT3G29080.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G29140.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G29090.1	protein_coding	pectin methylesterase 31	Encodes an atypical pectin methylesterase that does not require salt for its activity and has a blockwise mode of pectin demethylesterification.	pectin methylesterase 31;(source:Araport11)
AT3G29150.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box family protein;(source:Araport11)
AT3G29100.1	protein_coding	vesicle transport V-snare 13	Encodes a member of the Arabidopsis v-SNARE (vesicle soluble NSF attachment protein receptor) family that has 3 members: VTI11, VTI12, and VTI13.  This gene is not expressed at levels detectable by RT-PCR. However, one EST corresponding to this gene has been isolated.	vesicle transport V-snare 13;(source:Araport11)
AT3G29110.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G29160.1	protein_coding	SNF1 kinase homolog 11	encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1.  It has also been shown to interact with the WD protein PDL1.	SNF1 kinase homolog 11;(source:Araport11)
AT3G29170.1	protein_coding	Eukaryotic protein of unknown function (DUF872)		transmembrane protein (DUF872);(source:Araport11)
AT3G29120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 5.8e-98 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G21170.1	protein_coding	F-box and associated interaction domains-containing protein		F-box/associated interaction domain protein;(source:Araport11)
AT3G21320.1	protein_coding			EARLY FLOWERING protein;(source:Araport11)
AT3G21240.1	protein_coding	4-coumarate:CoA ligase 2	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order:  p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.	4-coumarate:CoA ligase 2;(source:Araport11)
AT3G21250.1	protein_coding	multidrug resistance-associated protein 6	member of MRP subfamily	multidrug resistance-associated protein 6;(source:Araport11)
AT3G21180.1	protein_coding	autoinhibited Ca(2+)-ATPase 9	one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.	autoinhibited Ca(2+)-ATPase 9;(source:Araport11)
AT3G21190.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT3G21260.1	protein_coding	Glycolipid transfer protein (GLTP) family protein		Glycolipid transfer protein (GLTP) family protein;(source:Araport11)
AT3G21200.1	protein_coding	proton gradient regulation 7	Encodes a soluble glutamyl-tRNA reductase (GluTR) binding protein that forms a ternary complex with FLU and GluTR.	proton gradient regulation 7;(source:Araport11)
AT3G21270.1	protein_coding	DOF zinc finger protein 2	Encodes Dof zinc finger protein adof2.	DOF zinc finger protein 2;(source:Araport11)
AT3G21210.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT3G21280.1	protein_coding	ubiquitin-specific protease 7	Encodes a ubiquitin-specific protease.	ubiquitin carboxyl-terminal hydrolase;(source:Araport11)
AT3G21220.1	protein_coding	MAP kinase kinase 5	Encodes a mitogen-activated kinase kinase, dual specific protein kinase that is expressed in vegetative tissues and floral buds. Involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK4. In plants with both MKK5 and MKK4 levels reduced by RNAi plants, floral organs do not abscise suggesting a role for both proteins in mediating floral organ abscission.MKK5 is part of a positive feedback loop that regulates HAE expression in floral receptacles.	MAP kinase kinase 5;(source:Araport11)
AT3G21290.1	protein_coding	dentin sialophosphoprotein-related		dentin sialophosphoprotein-like protein;(source:Araport11)
AT3G21230.1	protein_coding	4-coumarate:CoA ligase 5	The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order:  p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.	4-coumarate:CoA ligase 5;(source:Araport11)
AT3G21300.1	protein_coding	RNA methyltransferase family protein		RNA methyltransferase family protein;(source:Araport11)
AT3G21310.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT3G29210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1);(source:TAIR10)
AT3G29185.1	protein_coding	Domain of unknown function (DUF3598)	Encodes a chloroplast protein that interacts with the CF1&#946;, &#947;, and &#949; subunits of the chloroplast ATP synthase and is required for assembly of its F1 module. The protein is comprised primarily of two   &#946;-barrels and acts as a chaperone orchestrating the early steps of   the CF1 assembly pathway via specific interaction with the CF1 &#946;, &#947;, and &#949; subunits.	glutamate NMDA receptor subunit epsilon-1, putative (DUF3598);(source:Araport11)
AT3G29220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30843.1);(source:TAIR10)
AT3G29250.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G29230.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G29240.1	protein_coding	Protein of unknown function (DUF179)		PPR containing protein (DUF179);(source:Araport11)
AT3G29260.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G29190.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G29200.1	protein_coding	chorismate mutase 1	L-ascorbate peroxidase	chorismate mutase 1;(source:Araport11)
AT3G24480.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G24440.1	protein_coding	Fibronectin type III domain-containing protein	Encodes Vernalization Insensitive 3-like 1 (VIL1).  VIL1 is involved in the photoperiod and vernalization of Arabidopsis by regulating expression of the related floral repressors Flowering Locus C (FLC) and Flowering Locus M (FLM).  VIL1, along with VIN3 (Vernalization Insensitive 3) is necessary for the chromatin modification to FLC and FLM.	Fibronectin type III domain-containing protein;(source:Araport11)
AT3G24450.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G24460.1	protein_coding	Serinc-domain containing serine and sphingolipid biosynthesis protein		Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT3G16250.1	protein_coding	NDH-dependent cyclic electron flow 1	encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. Contains a 4Fe-4S cluster.	NDH-dependent cyclic electron flow 1;(source:Araport11)
AT3G16290.1	protein_coding	AAA-type ATPase family protein	Strong interaction with TIC inner envelope protein translocon which consists of Tic20/Tic56/Tic100/Tic214(Ycf1)(DOI:10.1105/tpc.18.00357).	AAA-type ATPase family protein;(source:Araport11)
AT3G16220.1	protein_coding	Predicted eukaryotic LigT		Putative eukaryotic LigT;(source:Araport11)
AT3G16260.1	protein_coding	tRNAse Z4	Encodes a tRNase Z. The mRNA is cell-to-cell mobile.	tRNAse Z4;(source:Araport11)
AT3G16190.1	protein_coding	Isochorismatase family protein		Isochorismatase family protein;(source:Araport11)
AT3G16210.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G16200.1	protein_coding			DNA-directed RNA polymerase subunit beta;(source:Araport11)
AT3G16230.1	protein_coding	Predicted eukaryotic LigT		Putative eukaryotic LigT;(source:Araport11)
AT3G16240.1	protein_coding	delta tonoplast integral protein	Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane. The mRNA is cell-to-cell mobile.	delta tonoplast integral protein;(source:Araport11)
AT3G18300.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G18390.1	protein_coding	CRS1 / YhbY (CRM) domain-containing protein		CRS1 / YhbY (CRM) domain-containing protein;(source:Araport11)
AT3G18470.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT3G18400.1	protein_coding	NAC domain containing protein 58		NAC domain containing protein 58;(source:Araport11)
AT3G18480.1	protein_coding	CCAAT-displacement protein alternatively spliced product	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component, known as a golgin in mammals and yeast.  A fluorescently-tagged version of CASP co-localizes with Golgi markers, and this localization appears to require the C-terminal (565–689aa) portion of the protein. The protein is inserted into a membrane in a type II orientation.	CCAAT-displacement protein alternatively spliced product;(source:Araport11)
AT3G18340.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G18410.1	protein_coding	Complex I subunit NDUFS6		NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 10-B-like protein (Complex I subunit NDUFS6);(source:Araport11)
AT3G18310.1	protein_coding			TATA box-binding protein associated factor RNA polymerase I subunit C;(source:Araport11)
AT3G18350.1	protein_coding	Plant protein of unknown function (DUF639)		Plant protein of unknown function (DUF639);(source:TAIR10)
AT3G18420.1	protein_coding	Protein prenylyltransferase superfamily protein		Protein prenylyltransferase superfamily protein;(source:Araport11)
AT3G18490.1	protein_coding	Eukaryotic aspartyl protease family protein	Encodes ASPG1 (ASPARTIC PROTEASE IN GUARD CELL 1). Functions in drought avoidance through abscisic acid (ABA) signalling in guard cells.	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G18360.1	protein_coding	VQ motif-containing protein	Member of VQ gene family. VQ proteins are named for the VQ motif (FxxxVQxxTG), a conserved amino acid region. Interacts with members of WRKY gene family, involved in pollen development.	VQ motif-containing protein;(source:Araport11)
AT3G18430.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G18500.1	protein_coding	DNAse I-like superfamily protein	Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT3G18370.1	protein_coding	C2 domain-containing protein		C2 domain-containing protein;(source:Araport11)
AT3G18440.1	protein_coding	aluminum-activated malate transporter 9	Belongs to the aluminum-activated malate transporter family. Encodes a vacuolar malate channel. Expressed in all parts of plants. Almost exclusively expressed in mesophyll cells of leaves. The mRNA is cell-to-cell mobile.	aluminum-activated malate transporter 9;(source:Araport11)
AT3G18510.1	protein_coding			ATP-dependent helicase/nuclease subunit;(source:Araport11)
AT3G18380.1	protein_coding	sequence-specific DNA binding transcription factors;sequence-specific DNA binding		DNA-BINDING TRANSCRIPTION FACTOR 2;(source:Araport11)
AT3G18450.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT3G18520.1	protein_coding	histone deacetylase 15	Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation.	histone deacetylase 15;(source:Araport11)
AT3G18460.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT3G18320.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G18330.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G27170.1	protein_coding	chloride channel B	member of Anion channel protein family The mRNA is cell-to-cell mobile.	chloride channel B;(source:Araport11)
AT3G27180.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G27140.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G27150.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	Target gene of MIR2111-5p.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G27160.1	protein_coding	Ribosomal protein S21 family protein	GHS1 encodes plastid ribosomal protein S21 The mRNA is cell-to-cell mobile.	Ribosomal protein S21 family protein;(source:Araport11)
AT3G28920.1	protein_coding	homeobox protein 34		homeobox protein 34;(source:Araport11)
AT3G23730.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 16		xyloglucan endotransglucosylase/hydrolase 16;(source:Araport11)
AT3G23790.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT3G23740.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G23800.1	protein_coding	selenium-binding protein 3		selenium-binding protein 3;(source:Araport11)
AT3G23750.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G23810.1	protein_coding	S-adenosyl-l-homocysteine (SAH) hydrolase 2		S-adenosyl-l-homocysteine (SAH) hydrolase 2;(source:Araport11)
AT3G23690.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G23700.1	protein_coding	Nucleic acid-binding proteins superfamily	Encodes a chloroplast-localized S1 domain-containing protein with RNA chaperone activity that affects the splicing and processing of chloroplast transcripts and plays a role in Arabidopsis seedling growth in the presence of ABA.	Nucleic acid-binding proteins superfamily;(source:Araport11)
AT3G23680.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G23710.1	protein_coding	Tic22-like family protein		Tic22-like family protein;(source:Araport11)
AT3G23760.1	protein_coding			transferring glycosyl group transferase;(source:Araport11)
AT3G23720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT3G23770.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT3G23780.1	protein_coding	nuclear RNA polymerase D2A	This gene encodes the second largest, catalytic subunit of the nuclear DNA-dependent RNA polymerase IV (aka RNA polymerase D). The NRPD2 protein is found at nuclear foci that overlap or are adjacent to chromocentromeres but are not fully coincident with chromocentromeres. The loss of NRPD2 leads to the loss of cytosine methylation at pericentromeric 5S genes and AtSN1 retroelements but has no discernible effect on centromere repeat methylation. This suggests that Pol IV primarily affects facultative heterochromatin rather than constitutive heterochromatin.	nuclear RNA polymerase D2A;(source:Araport11)
AT3G09070.1	protein_coding	Protein of unknown function (DUF740)	Encodes a polarly localised membrane-associated protein that regulates phloem differentiation entry.	LOW protein: UPF0503-like protein, putative (DUF740);(source:Araport11)
AT3G09080.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G09090.1	protein_coding	defective in exine formation protein (DEX1)	Encodes DEX1 (defective in exine formation).  Required for exine pattern formation during pollen development.	defective in exine formation protein (DEX1);(source:Araport11)
AT3G09100.1	protein_coding	mRNA capping enzyme family protein		mRNA capping enzyme family protein;(source:Araport11)
AT3G09040.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G09110.1	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT3G09050.1	protein_coding			8-amino-7-oxononanoate synthase;(source:Araport11)
AT3G09120.1	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT3G09060.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G09130.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G09140.1	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT3G19990.1	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT3G20000.1	protein_coding	translocase of the outer mitochondrial membrane 40	Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore. The mRNA is cell-to-cell mobile.	translocase of the outer mitochondrial membrane 40;(source:Araport11)
AT3G20010.1	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related	Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG2 and interacts physically with SUVR2, another component of the RdDM pathway.	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT3G20015.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G19960.1	protein_coding	myosin 1	member of Myosin-like proteins	myosin 1;(source:Araport11)
AT3G19970.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G19980.1	protein_coding	flower-specific, phytochrome-associated protein phosphatase 3	Encodes catalytic subunit of serine/threonine protein phosphatase 2A.  It can associate with phytochromes A and B in vitro.  Mutant plants display an accelerated flowering phenotype.Acts antagonistically to SnRK2 to regulate ABI5 phosphorylation. It inteacts with NRP which results in tethering to endosomes leading to its degradation.	flower-specific, phytochrome-associated protein phosphatase 3;(source:Araport11)
AT3G28230.1	protein_coding			something about silencing protein;(source:Araport11)
AT3G28270.1	protein_coding	Protein of unknown function (DUF677)	AFL1 was first identified by immunoscreening an Arabidopsis expression library with antisera recognizing mammalian &#946;1-integrin. It is a peripheral membrane protein associated with endomembranes and plasmamembrane. Based on overexpression and knockdown phenotypes, AFL1 is postulated to function in regulation of growth and proline accumulation in response to drought. AFL1 protein co-localizes with clatharin coated vesicles and has been shown to interact with itself and several endomembrane associated proteins.	transmembrane protein, putative (DUF677);(source:Araport11)
AT3G28280.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT3G28320.1	protein_coding	Protein of unknown function (DUF677)		transmembrane protein;(source:Araport11)
AT3G28290.1	protein_coding	Protein of unknown function (DUF677)	Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.	transmembrane protein, putative (DUF677);(source:Araport11)
AT3G28330.1	protein_coding	F-box family protein-related		F-box family protein-like protein;(source:Araport11)
AT3G28340.1	protein_coding	galacturonosyltransferase-like 10	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase-like 10;(source:Araport11)
AT3G28310.1	protein_coding	Protein of unknown function (DUF677)		hypothetical protein (DUF677);(source:Araport11)
AT3G28240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G10670.1);(source:TAIR10)
AT3G28250.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT3G28550.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT3G28560.1	protein_coding	BCS1 AAA-type ATPase		BCS1 AAA-type ATPase;(source:Araport11)
AT3G28640.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G28650.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G28710.1	protein_coding	ATPase, V0/A0 complex, subunit C/D		ATPase, V0/A0 complex, subunit C/D;(source:Araport11)
AT3G28660.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G28670.1	protein_coding	oxidoreductase, zinc-binding dehydrogenase family protein		oxidoreductase, zinc-binding dehydrogenase family protein;(source:Araport11)
AT3G28570.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G28680.1	protein_coding	Serine carboxypeptidase S28 family protein		Serine carboxypeptidase S28 family protein;(source:Araport11)
AT3G28580.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G28690.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G28590.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G28700.1	protein_coding	Protein of unknown function (DUF185)		NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185);(source:Araport11)
AT3G28600.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G28610.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G28620.1	protein_coding	Zinc finger, C3HC4 type (RING finger) family protein		Zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT3G28630.1	protein_coding	Protein of unknown function (DUF569)		actin cross-linking protein, putative (DUF569);(source:Araport11)
AT3G21890.1	protein_coding	B-box type zinc finger family protein		B-box type zinc finger family protein;(source:Araport11)
AT3G22010.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT3G21950.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G22020.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT3G21960.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT3G22080.1	protein_coding	TRAF-like family protein		ubiquitin carboxyl-terminal hydrolase-like protein;(source:Araport11)
AT3G21900.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT3G22090.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G22030.1	protein_coding	Receptor protein kinase-related		Receptor protein kinase-like protein;(source:Araport11)
AT3G21970.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory protein, putative (DUF26);(source:Araport11)
AT3G22100.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G22040.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory-like protein (DUF26);(source:Araport11)
AT3G21980.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory protein, putative (DUF26);(source:Araport11)
AT3G21910.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory protein, putative (DUF26);(source:Araport11)
AT3G22050.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory protein, putative (DUF26);(source:Araport11)
AT3G21990.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory-like protein (DUF26);(source:Araport11)
AT3G21920.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory protein, putative (DUF26);(source:Araport11)
AT3G22000.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory protein, putative (DUF26);(source:Araport11)
AT3G21930.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory protein;(source:Araport11)
AT3G22060.1	protein_coding	Receptor-like protein kinase-related family protein	contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain	Receptor-like protein kinase-related family protein;(source:Araport11)
AT3G22070.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT3G21940.1	protein_coding	Receptor protein kinase-related		Receptor protein kinase-like protein;(source:Araport11)
AT3G44220.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT3G44310.1	protein_coding	nitrilase 1	Mutants are resistant to indole-3-acetonitrile (IAN). NIT1 catalyzes the terminal activation step in indole-acetic acid biosynthesis. Predominantly expressed isoform of nitrilase isoenzyme family.   Aggregation of NIT1 in cells directly abutting wound sites is one of the earliest events associated with wound and herbicide-induced cell death.  The protein undergoes thiolation following treatment with the  oxidant tert-butylhydroperoxide. It is also involved in the conversion of IAN to IAM (indole-3-acetamide) and other non-auxin-related metabolic processes. The mRNA is cell-to-cell mobile.	nitrilase 1;(source:Araport11)
AT3G44230.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G44320.1	protein_coding	nitrilase 3	This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels.  It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways.	nitrilase 3;(source:Araport11)
AT3G44240.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G44250.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 38	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 38;(source:Araport11)
AT3G44260.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Encodes one of the homologs of the yeast CCR4-associated factor 1: AT3G44260 (CAF1a), AT5G22250 (CAF1b). Has mRNA deadenylation activity.  Also plays a role in plant defense responses.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G44270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-26 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G44280.1	protein_coding			peptidyl-prolyl cis-trans isomerase G;(source:Araport11)
AT3G44290.1	protein_coding	NAC domain containing protein 60		NAC domain containing protein 60;(source:Araport11)
AT3G44300.1	protein_coding	nitrilase 2	Encodes an enzyme that catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (nitrile aminohydrolase, EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. Mutants have reduced sensitivity to IAN and are sensitive to IAA. This enzyme likely participates in other non-auxin-related metabolic pathways. The mRNA is cell-to-cell mobile.	nitrilase 2;(source:Araport11)
AT3G57810.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G57890.1	protein_coding	Tubulin binding cofactor C domain-containing protein		Tubulin binding cofactor C domain-containing protein;(source:Araport11)
AT3G57820.1	pseudogene			pseudogene of Translation protein SH3-like family protein;(source:Araport11)
AT3G57900.1	protein_coding			import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT3G57990.1	protein_coding		Encodes a ß-barrel protein, named OEP40, locates in in the outer envelope of chloroplasts, and functions as a solute channel which is selectively permeable for glucose.	hypothetical protein;(source:Araport11)
AT3G57830.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G57910.1	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT3G58000.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT3G57840.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G57920.1	protein_coding	squamosa promoter binding protein-like 15	Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b.	squamosa promoter binding protein-like 15;(source:Araport11)
AT3G58010.1	protein_coding	plastoglobulin 34kD		plastoglobulin 34kD;(source:Araport11)
AT3G57850.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G57930.1	protein_coding			rho GTPase-activating gacO-like protein;(source:Araport11)
AT3G58020.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G57860.1	protein_coding	UV-B-insensitive 4-like	Encodes a protein that controls entry into the second meiotic division. Negatively regulates the Anaphase-Promoting Complex/Cyclosome.	UV-B-insensitive 4-like protein;(source:Araport11)
AT3G57940.1	protein_coding	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)		GNAT acetyltransferase (DUF699);(source:Araport11)
AT3G58030.1	protein_coding	RING/U-box superfamily protein	Encodes a RING domain E3 ligase. Has overlapping function with MUSE2 in the negative regulation of defence responses. SIKIC2 (and possibly SIKIC1 and 3) is ubiquination target.	RING/U-box superfamily protein;(source:Araport11)
AT3G57870.1	protein_coding	sumo conjugation enzyme 1	Encodes a SUMO ligase that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name.	sumo conjugation enzyme 1;(source:Araport11)
AT3G57950.1	protein_coding			cotton fiber protein;(source:Araport11)
AT3G58040.1	protein_coding	seven in absentia of Arabidopsis 2	Encodes a RING finger domain containing protein  that interacts with AtRAP2.2. The mRNA is cell-to-cell mobile.	seven in absentia of Arabidopsis 2;(source:Araport11)
AT3G57880.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein	Required for maintenance of inflorescence and shoot SAMs and normal development of the derived vascular cambium, functions in the SAM to promote continuous organogenesis, affects SAM development through STM, where it affects intracellular localization of STM in SAM cells in the peripheral region and prevents STM localization toward the cell wall of SAM cells in the peripheral region.	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein;(source:Araport11)
AT3G57960.1	protein_coding	Emsy N Terminus (ENT) domain-containing protein		Emsy N Terminus (ENT) domain-containing protein;(source:Araport11)
AT3G58050.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G57970.1	protein_coding	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein		Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein;(source:Araport11)
AT3G58060.1	protein_coding	Cation efflux family protein	TP8 is a tonoplast localized member of CDF family of cation transporters. It functions in roots as an Mn transporter.MTP8 transports manganese into root vacuoles of iron-deficient plants and thereby prevents inhibition of iron deficiency-induced ferric chelate reductase by manganese. In seed embryos, MTP8 is responsible for manganese and iron enrichment in the subepidermal cell layer (particularly in vit1 mutant background.)	Cation efflux family protein;(source:Araport11)
AT3G57980.1	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT3G03990.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes an alpha/beta hydrolase essential for strigolactone signaling.  Degradation of the protein is promoted by strigolactone. The mRNA is cell-to-cell mobile.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G04000.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	ChlADR is an aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons in vitro. The N-terminal region of this protein directs GFP to the chloroplast where where ChlADR likely helps to maintain the photosynthetic process by detoxifying reactive carbonyls formed during lipid peroxidation. In addition, this enzyme can also reduce cis-3-hexenal, a major plant volatile compound that contributes to green leaf odor, as well as methylglyoxal in vitro.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G04010.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT3G04020.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G04030.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G03950.1	protein_coding	evolutionarily conserved C-terminal region 1	Physically interacts with CIPK1. Located in the nucleus.	evolutionarily conserved C-terminal region 1;(source:Araport11)
AT3G04040.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G03960.1	protein_coding	TCP-1/cpn60 chaperonin family protein		TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT3G04050.1	protein_coding	Pyruvate kinase family protein		Pyruvate kinase family protein;(source:Araport11)
AT3G03970.1	protein_coding	ARM repeat superfamily protein	At3G03970 encodes the plant KASH protein SINE2; SINE2 interacts with SUN1 and SUN2 and is localized at the nuclear envelope.	ARM repeat superfamily protein;(source:Araport11)
AT3G03980.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G62580.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT3G62310.1	protein_coding	RNA helicase family protein		RNA helicase family protein;(source:Araport11)
AT3G62320.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G62400.1	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT3G62330.1	protein_coding	Zinc knuckle (CCHC-type) family protein		Zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT3G62410.1	protein_coding	CP12 domain-containing protein 2	CP12-2 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. CP12-2 is coordinately regulated by light with the photosynthetic GAPDH and PRK. The annotation of this gene is based on article 32494. The mRNA is cell-to-cell mobile.	CP12 domain-containing protein 2;(source:Araport11)
AT3G62500.1	protein_coding			F-box protein RMF;(source:Araport11)
AT3G62340.1	protein_coding	WRKY family transcription factor	member of WRKY Transcription Factor; Group II-c	WRKY family transcription factor;(source:Araport11)
AT3G62420.1	protein_coding	basic region/leucine zipper motif 53	Encodes a group-S bZIP transcription factor. Forms heterodimers with group-C bZIP transcription factors. The heterodimers bind to the ACTCAT cis-element of proline dehydrogenase gene.	basic region/leucine zipper motif 53;(source:Araport11)
AT3G62510.1	protein_coding	protein disulfide isomerase-related		disulfide isomerase-like protein;(source:Araport11)
AT3G62350.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT3G62430.1	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT3G62520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-86 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT3G62360.1	protein_coding	Carbohydrate-binding-like fold		Carbohydrate-binding-like fold;(source:Araport11)
AT3G62440.1	protein_coding	F-box/RNI-like superfamily protein	Encodes an F-box protein which is predominantly expressed in flower tissues and interacts with ASK19 protein.  Mutations in this gene suggest it acts as a negative regulator of endothecial secondary wall thickening in anthers.	F-box/RNI-like superfamily protein;(source:Araport11)
AT3G62530.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G62370.1	protein_coding	heme binding		heme binding protein;(source:Araport11)
AT3G62450.1	protein_coding			DNA mismatch repair protein;(source:Araport11)
AT3G62540.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G62380.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT3G62460.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G62550.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G62390.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 6	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 6;(source:Araport11)
AT3G62470.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G62560.1	protein_coding	Ras-related small GTP-binding family protein		Ras-related small GTP-binding family protein;(source:Araport11)
AT3G62480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01031.1);(source:TAIR10)
AT3G62570.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G62490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1);(source:TAIR10)
AT3G54320.1	protein_coding	Integrase-type DNA-binding superfamily protein	WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation. Splice form 3 is the major form expressed in seedlings.Mutations in the C terminal intrinsically disordered region increase the stability of WRI1 and lead to increased oil production.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G54340.1	protein_coding	K-box region and MADS-box transcription factor family protein 	Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT3G54350.1	protein_coding	Forkhead-associated (FHA) domain-containing protein 		Forkhead-associated (FHA) domain-containing protein;(source:Araport11)
AT3G54360.1	protein_coding	zinc ion binding	Encodes a catalase chaperon that is essential for catalase activity. Required for multiple stress responses.	zinc ion binding protein;(source:Araport11)
AT3G05050.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G05220.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G05140.1	protein_coding	ROP binding protein kinases 2		ROP binding protein kinases 2;(source:Araport11)
AT3G05060.1	protein_coding	NOP56-like pre RNA processing ribonucleoprotein	SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein	NOP56-like pre RNA processing ribonucleoprotein;(source:Araport11)
AT3G05150.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G05310.1	protein_coding	MIRO-related GTP-ase 3	Encodes a protein with similarity to MIRO GTPases.	MIRO-related GTP-ase 3;(source:Araport11)
AT3G05230.1	protein_coding	Signal peptidase subunit		Signal peptidase subunit;(source:Araport11)
AT3G05160.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G05320.1	protein_coding	O-fucosyltransferase family protein	Golgi localized protein with similarity to protein O-fucosyltransferases. Mutants show lower seed set/reduced fertility. Mutant pollen fails to compete with wild type due to the inability to penetrate the stigma-style boundary.	O-fucosyltransferase family protein;(source:Araport11)
AT3G05240.1	protein_coding	mitochondrial editing factor  19	Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.	mitochondrial editing factor 19;(source:Araport11)
AT3G05170.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT3G05090.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a DCAF protein.  Mutants are defective in lateral root development and suggest roles for DDB1­Cul4–mediated protein degradation in regulating auxin accumulation during lateral root primordium development and lateral root meristem emergence.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G05070.1	protein_coding			Cwf18 pre-mRNA splicing factor;(source:Araport11)
AT3G05250.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G05180.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G05100.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G05330.1	protein_coding	cyclin family	Encodes a protein with moderate sequence similarity to the maize microtubule-binding protein TANGLED1.    A single base-pair deletion (-A) at position Chr3:1519176 in Columbia relative to the Landsberg erecta and Achkarren-2 ecotype (see ESTs DR378436 and CB26450) introduces a frame-shift and premature termination codon. The protein encoded from the Columbia gene is truncated by 29 amino acids relative to the Landsberg erecta and Achkarren-2 encoded proteins. Involved in the identification of the division plane during mitosis amd cytokinesis	cyclin family;(source:Araport11)
AT3G05260.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G05190.1	protein_coding	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein		D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT3G05110.1	protein_coding	Domain of unknown function (DUF3444)		early endosome antigen-like protein, putative (DUF3444);(source:Araport11)
AT3G05340.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G05270.1	protein_coding	Plant protein of unknown function (DUF869)	Encodes a protein that localizes at motile vesicle-like small compartments in differentiating xylem cells that is associated with microtubule plus-ends.  VETH-positive compartments are unlikely to be elements in conventional endomembrane trafficking pathways.  It can associate with COG2, and together these two proteins co-localize with the EXO70A1 exocyst subunit, tethering EXO70A1 to compartments associated with cortical microtubules.	filament-like protein (DUF869);(source:Araport11)
AT3G05200.1	protein_coding	RING/U-box superfamily protein	Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). The mRNA is cell-to-cell mobile.	RING/U-box superfamily protein;(source:Araport11)
AT3G05120.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. The DELLA region alone can interact with GID1A in GA-dependent manner in a Y2H assay.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G05350.1	protein_coding	Metallopeptidase M24 family protein		Metallopeptidase M24 family protein;(source:Araport11)
AT3G05280.1	protein_coding	Integral membrane Yip1 family protein		Integral membrane Yip1 family protein;(source:Araport11)
AT3G05210.1	protein_coding	nucleotide repair protein, putative	encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10.	nucleotide repair protein;(source:Araport11)
AT3G05130.1	protein_coding			paramyosin-like protein;(source:Araport11)
AT3G05290.1	protein_coding	peroxisomal adenine nucleotide carrier 1	encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.	peroxisomal adenine nucleotide carrier 1;(source:Araport11)
AT3G05300.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT3G05080.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G03620.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT3G03610.1	protein_coding	ELMO/CED-12 family protein		ELMO/CED-12 family protein;(source:Araport11)
AT3G03600.1	protein_coding	ribosomal protein S2	Structural component of the mitochondrial ribosome small subunit	ribosomal protein S2;(source:Araport11)
AT3G03690.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT3G03590.1	protein_coding	SWIB/MDM2 domain superfamily protein		SWIB/MDM2 domain superfamily protein;(source:Araport11)
AT3G03680.1	protein_coding	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein	Encodes a m-type thioredoxin (Trx-m1) localized in chloroplast stroma.	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT3G03580.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G03670.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT3G03570.1	protein_coding	Protein of unknown function (DUF3550/UPF0682)		signal transducer, putative (DUF3550/UPF0682);(source:Araport11)
AT3G03660.1	protein_coding	WUSCHEL related homeobox 11	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Together with WOX12, WOX11 is involved in de novo root organogenesis.	WUSCHEL related homeobox 11;(source:Araport11)
AT3G03650.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT3G03640.1	protein_coding	beta glucosidase 25	Encodes beta-glucosidase (GLUC).	beta glucosidase 25;(source:Araport11)
AT3G03630.1	protein_coding	cysteine synthase 26	Encodes a protein that possesses S-sulfocysteine synthase activity and lacks O-acetylserien(thiol)lyase activity.	cysteine synthase 26;(source:Araport11)
AT3G42560.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G42650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 7.9e-100 P-value blast match to At1g36190.1/92-340 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G42570.1	protein_coding	peroxidase family protein		peroxidase family protein;(source:Araport11)
AT3G42660.1	protein_coding	transducin family protein / WD-40 repeat family protein	Ctf4 related  nuclear protein. Interacts with LHP1-PRC2 to maintain H3K27 methylation in rapidly dividing cells. EOL1 expression is restricted to rapidly dividing cells.	transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G42580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G12100.1);(source:TAIR10)
AT3G42670.1	protein_coding	chromatin remodeling 38	Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced. Locus-specific regulator of 24nt-siRNA expression, works together with CLSY2-4 as the master regulators of essentially all Pol-IV-dependent 24nt-siRNAs.	chromatin remodeling 38;(source:Araport11)
AT3G42590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12110.1);(source:TAIR10)
AT3G42680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05647.1);(source:TAIR10)
AT3G42600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12120.1);(source:TAIR10)
AT3G42690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04130.1);(source:TAIR10)
AT3G42610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28484.1);(source:TAIR10)
AT3G42620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06690.1);(source:TAIR10)
AT3G42630.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G42640.1	protein_coding	H(+)-ATPase 8		H[+]-ATPase 8;(source:Araport11)
AT3G29540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.4e-26 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G29480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.3e-232 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G29510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.6e-122 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT3G29520.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT3G29640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29632.1);(source:TAIR10)
AT3G32960.1	protein_coding	Domain of unknown function (DUF1985)		hypothetical protein (DUF1985);(source:Araport11)
AT3G32930.1	protein_coding		Protein of unknown function. Locus is correlated with bacterial hypersensitive response, expression is reduced after injection with avrRpm1.	6,7-dimethyl-8-ribityllumazine synthase;(source:Araport11)
AT3G32940.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT3G32950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 0. P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT3G01370.1	protein_coding	CRM family member 2	Encodes a protein containing a CRM domain that is involved in group I and group II intron splicing.	CRM family member 2;(source:Araport11)
AT3G01450.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G01460.1	protein_coding	methyl-CPG-binding domain 9	Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins.  Involved in the modification of the FLC  chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot  branching phenotypes.	methyl-CPG-binding domain 9;(source:Araport11)
AT3G01380.1	protein_coding	transferases;sulfuric ester hydrolases;catalytics;transferases		sulfatase and phosphatidylinositolglycan class N domain-containing protein;(source:Araport11)
AT3G01390.1	protein_coding	vacuolar membrane ATPase 10	Subunit G of the vacuolar membrane ATPAse complex	vacuolar membrane ATPase 10;(source:Araport11)
AT3G01400.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G01410.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G01420.1	protein_coding	Peroxidase superfamily protein	Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress.  Independent of NPR1 in  induction by salicylic acid. The mRNA is cell-to-cell mobile.	Peroxidase superfamily protein;(source:Araport11)
AT3G01430.1	protein_coding			NHL domain protein;(source:Araport11)
AT3G01440.1	protein_coding	PsbQ-like 1	Encodes a subunit of the NAD(P)H complex located in the chloroplast thylakoid lumen.	PsbQ-like 1;(source:Araport11)
AT3G45160.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT3G45170.1	protein_coding	GATA transcription factor 14	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 14;(source:Araport11)
AT3G45180.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT3G45100.1	protein_coding	UDP-Glycosyltransferase superfamily protein	encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G45190.1	protein_coding	SIT4 phosphatase-associated family protein		SIT4 phosphatase-associated family protein;(source:Araport11)
AT3G45110.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G45200.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G45120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17900.1);(source:TAIR10)
AT3G45210.1	protein_coding	Protein of unknown function, DUF584		transcription initiation factor TFIID subunit (Protein of unknown function, DUF584);(source:Araport11)
AT3G45130.1	protein_coding	lanosterol synthase 1		lanosterol synthase 1;(source:Araport11)
AT3G45220.1	protein_coding	Serine protease inhibitor (SERPIN) family protein		Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT3G45140.1	protein_coding	lipoxygenase 2	Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. The mRNA is cell-to-cell mobile.	lipoxygenase 2;(source:Araport11)
AT3G45230.1	protein_coding	hydroxyproline-rich glycoprotein family protein	Encodes the arabinogalactan protein core of plant cell wall proteoglycan that contains arabinogalactan and cell wall matrix glycan pectin and/or xylan domains.	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G45150.1	protein_coding	TCP domain protein 16		TCP domain protein 16;(source:Araport11)
AT3G54550.1	protein_coding	Protein of unknown function (DUF506) 		DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506);(source:Araport11)
AT3G54560.1	protein_coding	histone H2A 11	Encodes HTA11, a histone H2A protein. Loss of all H2A.Z (triple mutant with HTA8 and HTA9) results in a reduction in DNA methylation of transposons but not that of genes.  Loss of H2A.Z causes misregulation of many genes involved in the response to developmental and environmental cues, and that these genes tend to have high levels of gene-body H2A.Z.	histone H2A 11;(source:Araport11)
AT3G54480.1	protein_coding	SKP1/ASK-interacting protein 5	Encodes an SKP1 interacting partner (SKIP5).	SKP1/ASK-interacting protein 5;(source:Araport11)
AT3G54580.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT3G54570.1	protein_coding	Plant calmodulin-binding protein-related		Plant calmodulin-binding protein-like protein;(source:Araport11)
AT3G54490.1	protein_coding	RNA polymerase II fifth largest subunit, E	NRPE5-like protein of unknown function; homologous to budding yeast RPB5	RNA polymerase II fifth largest subunit, E;(source:Araport11)
AT3G54590.1	protein_coding	hydroxyproline-rich glycoprotein	Encodes a hydroxyproline-rich glycoprotein. The mRNA is cell-to-cell mobile.	hydroxyproline-rich glycoprotein;(source:Araport11)
AT3G54500.1	protein_coding		Member of a small family (4 proteins) in Arabidopsis that have some overlap in function. LNK2 along with LNK1  functions in the integration of light signaling and circadian clock. It is regulated by  the clock TOC1 complex. Functions as a transcriptional coactivator.	agglutinin-like protein;(source:Araport11)
AT3G54600.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein		Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT3G54510.1	protein_coding	Early-responsive to dehydration stress protein (ERD4)		Early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT3G54630.1	protein_coding			kinetochore protein;(source:Araport11)
AT3G54520.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G54530.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G42300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1);(source:TAIR10)
AT3G42390.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G42310.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G42400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G33200.1);(source:TAIR10)
AT3G42320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64410.1);(source:TAIR10)
AT3G42410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G37100.1);(source:TAIR10)
AT3G42330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal;(source:TAIR10)
AT3G42420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, various predicted proteins, including predicted Helicases.;(source:TAIR10)
AT3G42340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52960.1);(source:TAIR10)
AT3G42430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37045.1);(source:TAIR10)
AT3G42350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06095.1);(source:TAIR10)
AT3G42360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Putative 22 kDa kafirin cluster;(source:TAIR10)
AT3G43870.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43880.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43960.1	protein_coding	Cysteine proteinases superfamily protein	Encodes a putative cysteine proteinase.  Mutants exhibit shorter root hairs under phosphate-deficient conditions.	Cysteine proteinases superfamily protein;(source:Araport11)
AT3G43970.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43890.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G43980.1	protein_coding	Ribosomal protein S14p/S29e family protein		Ribosomal protein S14p/S29e family protein;(source:Araport11)
AT3G43910.1	protein_coding			MutS2;(source:Araport11)
AT3G43990.1	protein_coding	Bromo-adjacent homology (BAH) domain-containing protein		Bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT3G43920.1	protein_coding	dicer-like 3	Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.	dicer-like 3;(source:Araport11)
AT3G44000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.9e-07 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G43930.1	protein_coding	BRCT domain-containing DNA repair protein		BRCT domain-containing DNA repair protein;(source:Araport11)
AT3G44010.1	protein_coding	Ribosomal protein S14p/S29e family protein		Ribosomal protein S14p/S29e family protein;(source:Araport11)
AT3G43940.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G44020.1	protein_coding	thylakoid lumenal P17.1 protein		thylakoid lumenal P17.1 protein;(source:Araport11)
AT3G43950.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G44030.1	pseudogene			pseudogene of nuclease;(source:Araport11)
AT3G55010.1	protein_coding	phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)	encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)	phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5);(source:Araport11)
AT3G55100.1	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT3G55020.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT3G55110.1	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT3G55030.1	protein_coding	phosphatidylglycerolphosphate synthase 2	Encodes a phosphatidylglycerolphosphate synthase.	phosphatidylglycerolphosphate synthase 2;(source:Araport11)
AT3G55120.1	protein_coding	Chalcone-flavanone isomerase family protein	Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. Co-expressed with CHS.	Chalcone-flavanone isomerase family protein;(source:Araport11)
AT3G55040.1	protein_coding	glutathione transferase lambda 2	Encodes a member of the lambda family of glutathione transferases. It has thiol transferase activity and self S-glutathionylation activity in vitro.	glutathione transferase lambda 2;(source:Araport11)
AT3G55050.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G55060.1	protein_coding			CAP-gly domain linker;(source:Araport11)
AT3G55070.1	protein_coding	LisH/CRA/RING-U-box domains-containing protein		LisH/CRA/RING-U-box domains-containing protein;(source:Araport11)
AT3G55080.1	protein_coding	SET domain-containing protein		SET domain-containing protein;(source:Araport11)
AT3G55090.1	protein_coding	ABC-2 type transporter family protein	Belongs to a clade of five Arabidopsis thaliana ABCG half-transporters that are required for synthesis of an effective suberin barrier in roots and seed coats (ABCG2, ABCG6, and ABCG20) and for synthesis of an intact pollen wall (ABCG1 and ABCG16).	ABC-2 type transporter family protein;(source:Araport11)
AT3G32980.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT3G33010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G32990.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT3G49750.1	protein_coding	receptor like protein 44		receptor like protein 44;(source:Araport11)
AT3G49760.1	protein_coding	basic leucine-zipper 5		basic leucine-zipper 5;(source:Araport11)
AT3G49850.1	protein_coding	telomere repeat binding factor 3	Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.Single Myb Histone (SMH) gene family member. Contains terminal acidic SANT domain.	telomere repeat binding factor 3;(source:Araport11)
AT3G49770.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G49690.1	protein_coding	myb domain protein 84	Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB84, regulates axillary meristem formation.	myb domain protein 84;(source:Araport11)
AT3G49860.1	protein_coding	ADP-ribosylation factor-like A1B	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	ADP-ribosylation factor-like A1B;(source:Araport11)
AT3G49780.1	protein_coding	phytosulfokine 4 precursor	Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype.	phytosulfokine 4 precursor;(source:Araport11)
AT3G49700.1	protein_coding	1-aminocyclopropane-1-carboxylate synthase 9	encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family.  Mutants produce elevated levels of ethylene as etiolated seedlings.	1-aminocyclopropane-1-carboxylate synthase 9;(source:Araport11)
AT3G49870.1	protein_coding	ADP-ribosylation factor-like A1C	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	ADP-ribosylation factor-like A1C;(source:Araport11)
AT3G49790.1	protein_coding	Carbohydrate-binding protein		Carbohydrate-binding protein;(source:Araport11)
AT3G49710.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G49880.1	protein_coding	glycosyl hydrolase family protein 43		glycosyl hydrolase family protein 43;(source:Araport11)
AT3G49800.1	protein_coding	BSD domain-containing protein		BSD domain-containing protein;(source:Araport11)
AT3G49720.1	protein_coding		Encodes CGR2 (cotton Golgi-related 2). CGR2 and a close homologue CGR3 have overlapping roles in plant growth and pectin methylesterification in the Golgi apparatus.	transmembrane protein;(source:Araport11)
AT3G49890.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G49810.1	protein_coding	ARM repeat superfamily protein	Encodes a protein with  E3 ubiquitin ligase activity that is involved in negative regulation of salt stress tolerance during germination.	ARM repeat superfamily protein;(source:Araport11)
AT3G49730.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G49900.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G49820.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G49740.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G49830.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G49840.1	protein_coding	Uncharacterized conserved protein (DUF2215)	Encodes an orthlog of the Xenopus inner nuclear membrane (INM) protein Nemp1/TMEM194A.	transmembrane protein (DUF2215);(source:Araport11)
AT3G59670.1	protein_coding			elongation factor;(source:Araport11)
AT3G59590.1	protein_coding	jacalin lectin family protein		jacalin lectin family protein;(source:Araport11)
AT3G59510.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G59680.1	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT3G59600.1	protein_coding	RNA polymerase Rpb8	One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II, IV and V; homologous to budding yeast  RPB8.  Probably redundant with At1g54250.	RNA polymerase Rpb8;(source:Araport11)
AT3G59520.1	protein_coding	RHOMBOID-like protein 13		RHOMBOID-like protein 13;(source:Araport11)
AT3G59690.1	protein_coding	IQ-domain 13	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 13;(source:Araport11)
AT3G59610.1	protein_coding	F-box family protein / jacalin lectin family protein		F-box family protein / jacalin lectin family protein;(source:Araport11)
AT3G59530.1	protein_coding	Calcium-dependent phosphotriesterase superfamily protein		Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT3G59700.1	protein_coding	lectin-receptor kinase	Member of Receptor kinase-like protein family. Represses stomatal immunity induced by Pseudomonas syringae pv. tomato DC3000.	lectin-receptor kinase;(source:Araport11)
AT3G59620.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G59540.1	protein_coding	Ribosomal L38e protein family		Ribosomal L38e protein family;(source:Araport11)
AT3G59710.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G59630.1	protein_coding	diphthamide synthesis DPH2 family protein		diphthamide synthesis DPH2 family protein;(source:Araport11)
AT3G59720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-214 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G59640.1	protein_coding	glycine-rich protein	Plasma membrane localized. glycine rich protein of unknown function. Involved in non host resistance.	glycine-rich protein;(source:Araport11)
AT3G59730.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G59740.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G59550.1	protein_coding	Rad21/Rec8-like family protein	Encodes an alpha-kleisin protein that is localized primarily in the nucleolus and is essential for megagametogenesis and plays an important role in pollen development.  alpha-kleisins are core components of meiotic and mitotic cohesin complexes.	Rad21/Rec8-like family protein;(source:Araport11)
AT3G59650.1	protein_coding	mitochondrial ribosomal protein L51/S25/CI-B8 family protein		mitochondrial ribosomal protein L51/S25/CI-B8 family protein;(source:Araport11)
AT3G59570.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT3G59660.1	protein_coding	C2 domain-containing protein / GRAM domain-containing protein	Encodes a C2-GRAM domain-containing protein that is induced by B. cinerea infection. It is required for cleavage of BAG6 and thus plays a role in mediating resistance to fungal infection.	C2 domain-containing protein / GRAM domain-containing protein;(source:Araport11)
AT3G59500.1	protein_coding	Integral membrane HRF1 family protein		Integral membrane HRF1 family protein;(source:Araport11)
AT3G59580.1	protein_coding	Plant regulator RWP-RK family protein		Plant regulator RWP-RK family protein;(source:Araport11)
AT3G08880.1	protein_coding		Encodes a kinetochore hub-protein that is required for chromosome segregation to ensure proper cell division and the   maintenance of plant architecture.	plectin-like protein;(source:Araport11)
AT3G08940.1	protein_coding	light harvesting complex photosystem II	Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of photosystem II The mRNA is cell-to-cell mobile.	light harvesting complex photosystem II;(source:Araport11)
AT3G08870.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G08930.1	protein_coding	LMBR1-like membrane protein		LMBR1-like membrane protein;(source:Araport11)
AT3G08860.1	protein_coding	PYRIMIDINE 4	Encodes a protein that is predicted to have beta-alanine aminotransferase activity.	PYRIMIDINE 4;(source:Araport11)
AT3G08920.1	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein		Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT3G08850.1	protein_coding	HEAT repeat ;WD domain, G-beta repeat protein protein	Encodes one of two Arabidopsis RAPTOR/KOG1 homologs.  RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients.   Mutants show embryo lethal phenotype which occurs at pre-globular stage. May interact with TOR kinase in a rapamycin like signaling pathway. Interacts with TOR and S6K1 in vivo. Overexpression of RAPTOR1 rendered the S6K1 osmotic stress insensitive.	Regulatory-associated protein of TOR 1;(source:Araport11)
AT3G08910.1	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT3G08970.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein	J domain protein localized in ER lumen. Can compensate for the growth defect in jem1 scj1 mutant yeast. Also shows similarity to HSP40 proteins and is induced by heat stress. At high temperatures, mutant alleles are not transmitted through the pollen due to defects in pollen tube growth.	DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT3G08840.1	protein_coding	D-alanine--D-alanine ligase family		D-alanine-D-alanine ligase family;(source:Araport11)
AT3G08900.1	protein_coding	reversibly glycosylated polypeptide 3	RGP3 is a UDP-arabinose mutase that catalyzes the interconversion between the pyranose and furanose forms of UDP-L-arabinose. It is a reversibly autoglycosylated protein. Fluorescently-tagged RGP3 is found in the cytosol and associated with Golgi-like particles when expressed in tobacco leaves. An RGP3-YFP fusion protein under the control a native promoter can be found in the endosperm of Arabidopsis embryos during the linear and bent cotyledon stages of development.	reversibly glycosylated polypeptide 3;(source:Araport11)
AT3G08960.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G08890.1	protein_coding	Protein of unknown function, DUF538		hypothetical protein (Protein of unknown function, DUF538);(source:Araport11)
AT3G08950.1	protein_coding	electron transport SCO1/SenC family protein	Encodes HCC1, homologue of the copper chaperone SCO1 (synthesis of cytochrome c oxidase 1) from the yeast Saccharomyces cerevisiae. SCO1 encodes a mitochondrial protein that is essential for the correct assembly of complex IV in the respiratory chain.  HCC1 is localized in the mitochondrion.  A chimeric yeast Sco1-Arabidopsis HCC1 protein complements yeast Sco1 activity.  Embryos of hcc1 mutants became arrested at various developmental stages, mostly at the heart stage.	electron transport SCO1/SenC family protein;(source:Araport11)
AT3G03230.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G03060.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G03220.1	protein_coding	expansin A13	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A13;(source:Araport11)
AT3G03050.1	protein_coding	cellulose synthase-like D3	encodes a cellulose synthase like protein. mutations initiate root  hairs that rupture at their tip soon after initiation. is required for the synthesis of a  noncellulosic wall polysaccharide.	cellulose synthase-like D3;(source:Araport11)
AT3G03300.1	protein_coding	dicer-like 2	Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants.  Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.	dicer-like 2;(source:Araport11)
AT3G03210.1	protein_coding			Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein;(source:Araport11)
AT3G03130.1	protein_coding			lisH domain-like protein;(source:Araport11)
AT3G03200.1	protein_coding	NAC domain containing protein 45		NAC domain containing protein 45;(source:Araport11)
AT3G03120.1	protein_coding	ADP-ribosylation factor B1C	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins.	ADP-ribosylation factor B1C;(source:Araport11)
AT3G03190.1	protein_coding	glutathione S-transferase F11	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase F11;(source:Araport11)
AT3G03290.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G03280.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G03180.1	protein_coding	Got1/Sft2-like vescicle transport protein family		Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT3G03110.1	protein_coding	exportin 1B	Encodes a member of the exportin family (XPO1B)which function as receptors for nuclear transport.Along with XPO1A involved in the development of male and female gametophytes.	exportin 1B;(source:Araport11)
AT3G03270.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	HRU1 is a hypoxia induced universal stress protein. It exists as two splice variants with AT3G03270.2 , which contains a putative dimerization domain, the predominant transcript found under anoxia. It is induced by RAP2.12. Subcellular localization is dynamic; under anoxia the localization of HRU1 shifts from cytoplasm to the plasma membrane.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G03170.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G03100.1	protein_coding	NADH:ubiquinone oxidoreductase, 17.2kDa subunit		NADH:ubiquinone oxidoreductase, 17.2kDa subunit;(source:Araport11)
AT3G03260.1	protein_coding	homeodomain GLABROUS 8	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	homeodomain GLABROUS 8;(source:Araport11)
AT3G03160.1	protein_coding			B-cell receptor-associated-like protein;(source:Araport11)
AT3G03090.1	protein_coding	vacuolar glucose transporter 1	Encodes a vacuolar membrane-localized glucose transporter that can also transport fructose.  Mutations in these gene have effects on seed germination and time to flowering.	vacuolar glucose transporter 1;(source:Araport11)
AT3G03250.1	protein_coding	UDP-GLUCOSE PYROPHOSPHORYLASE 1	Is thought to encode a cytosolic UDP-glucose pyrophosphorylase with strong similarity to potato UTP--glucose-1-phosphate uridylyltransferase.  Downregulated by flooding.	UDP-GLUCOSE PYROPHOSPHORYLASE 1;(source:Araport11)
AT3G03150.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G03080.1	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT3G03240.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G03140.1	protein_coding	Tudor/PWWP/MBT superfamily protein	Encodes a chromatin-associated protein that interacts with plant nuclear lamin-like components to regulate nuclear size.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT3G03070.1	protein_coding	NADH-ubiquinone oxidoreductase-related		NADH-ubiquinone oxidoreductase-like protein;(source:Araport11)
AT3G47990.1	protein_coding	SUGAR-INSENSITIVE 3		SUGAR-INSENSITIVE 3;(source:Araport11)
AT3G47910.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT3G48080.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G48000.1	protein_coding	aldehyde dehydrogenase 2B4	Encodes a putative (NAD+) aldehyde dehydrogenase.	aldehyde dehydrogenase 2B4;(source:Araport11)
AT3G47920.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT3G48090.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G48010.1	protein_coding	cyclic nucleotide-gated channel 16	member of Cyclic nucleotide gated channel family	cyclic nucleotide-gated channel 16;(source:Araport11)
AT3G47930.1	protein_coding	L-galactono-1,4-lactone dehydrogenase	L-Galactono-1,4-lactone dehydrogenase, catalyzes the final step of ascorbate biosynthesis	L-galactono-1,4-lactone dehydrogenase;(source:Araport11)
AT3G48100.1	protein_coding	response regulator 5	Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.	response regulator 5;(source:Araport11)
AT3G48020.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G47940.1	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT3G48110.1	protein_coding	glycine-tRNA ligases	glycine-tRNA ligase	glycine-tRNA ligase;(source:Araport11)
AT3G48030.1	protein_coding	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein	Mitochondria localized, hypoxia induced gene similar to rice HIGD.	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT3G47950.1	protein_coding	H(+)-ATPase 4	mutant has Slight reduction in root and shoot growth; Exaggerated defects in salt stress; Plasma Membrane H+ ATPase	H[+]-ATPase 4;(source:Araport11)
AT3G48040.1	protein_coding	RHO-related protein from plants 10	Encodes a member of the Rop subfamily of Rho GTPases in Arabidopsis that contains a putative farnesylation motif.  It is localized to the plasma membrane and involved in the negative regulation of ABA signalling.	RHO-related protein from plants 10;(source:Araport11)
AT3G47960.1	protein_coding	Major facilitator superfamily protein	Encodes a high-affinity, proton-dependent glucosinolate-specific transporter that is crucial for the transport of both methionine- and tryptophan-derived glucosinolates to seeds.	Major facilitator superfamily protein;(source:Araport11)
AT3G48050.1	protein_coding	BAH domain ;TFIIS helical bundle-like domain	Encodes a large protein with N-terminal bromo-adjacent homology (BAH) and transcription elongation factor S-II (TFS2N) domains and two C-terminal GW (glycine and tryptophan) repeats. It is nuclear and colocalizes with the processing-body component DCP1 in the cytoplasm. SOU is a component of the miRNA pathway and is involved in translational repression.	protein SUO;(source:Araport11)
AT3G48060.1	protein_coding	BAH domain ;TFIIS helical bundle-like domain		BAH and TFIIS domain-containing protein;(source:Araport11)
AT3G48070.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G47890.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT3G47980.1	protein_coding	Integral membrane HPP family protein		Integral membrane HPP family protein;(source:Araport11)
AT3G62140.1	protein_coding			NEFA-interacting nuclear protein;(source:Araport11)
AT3G62060.1	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT3G62150.1	protein_coding	P-glycoprotein 21	Encodes a facultative transporter controlling auxin concentrations in plant cells.	P-glycoprotein 21;(source:Araport11)
AT3G62070.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G62240.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G62160.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G62080.1	protein_coding	SNF7 family protein	Encodes a charged multi-vesicular body protein (CHMP7) homolog, that is an ESCRT-III-related protein and functions in the endosomal sorting pathway in humans. The Brassica homolog has been shown to be involved in plant growth and leaf senescence.	SNF7 family protein;(source:Araport11)
AT3G62250.1	protein_coding	ubiquitin 5		ubiquitin 5;(source:Araport11)
AT3G62090.1	protein_coding	phytochrome interacting factor 3-like 2	encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.	phytochrome interacting factor 3-like 2;(source:Araport11)
AT3G62170.1	protein_coding	VANGUARD 1 homolog 2		VANGUARD-like protein;(source:Araport11)
AT3G62260.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G62100.1	protein_coding	indole-3-acetic acid inducible 30	Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA30 lacks the conserved degron (domain II) found in many family members.  IAA30 transcripts are induced by auxin treatment and accumulate preferentially in the quiescent center cells of the root meristem. Overexpression of IAA30 leads to defects in gravitropism, root development, root meristem maintenance, and cotyledon vascular development. Target of LEC2 and AGL15. Promotes somatyic embryogenesis.	indole-3-acetic acid inducible 30;(source:Araport11)
AT3G62180.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G62270.1	protein_coding	HCO3- transporter family	BOR2 is involved in efficient borate crosslinking of rhamnogalacturonan II in cell walls under boron limitation.	HCO3- transporter family;(source:Araport11)
AT3G62110.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G62190.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G62280.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G62120.1	protein_coding	Class II aaRS and biotin synthetases superfamily protein	Encodes a cytosolic prolyl-tRNA synthetase.	Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT3G62200.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G62290.1	protein_coding	ADP-ribosylation factor A1E	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. The mRNA is cell-to-cell mobile.	ADP-ribosylation factor A1E;(source:Araport11)
AT3G62130.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	Encodes an enzyme that decomposes L-cysteine into pyruvate, H2S, and NH3.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT3G62210.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G62300.1	protein_coding	DOMAIN OF UNKNOWN FUNCTION 724 7	Encodes a protein with Agenet/Tudor and DUF724 domains. It can interact with ABAP1, a negative regulator of DNA replication and transcription, with the plant histone modification 'reader' LHP1, and with non-modified histones. It may act as a link between DNA replication, transcription and chromatin remodeling during flower development. Loss of function mutant has a WT phenotype.	agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7);(source:Araport11)
AT3G62220.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G62230.1	protein_coding	F-box family protein	Target promoter of the male germline-specific transcription factor DUO1.	F-box family protein;(source:Araport11)
AT3G44650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.1e-43 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G44660.1	protein_coding	histone deacetylase 10		histone deacetylase 10;(source:Araport11)
AT3G44670.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G44680.1	protein_coding	histone deacetylase 9	Encodes HDA9 (a RPD3-like histone deacetylase). Functions in promoting the onset of leaf senescence.The hda9 mutant shows enhanced H3K9 acetylation levels,based on immunodetection using H3K9ac antibodies.	histone deacetylase 9;(source:Araport11)
AT3G44610.1	protein_coding	Protein kinase superfamily protein	Kinase involved in the first positive phototropism and gravitropism. Phosphorylates serine residues in the cytoplasmic loop of PIN1 and shares phosphosite preferences with D6PK. Critical component for both hypocotyl phototropism and gravitropism, control tropic responses mainly through regulation of PIN-mediated auxin transport by protein phosphorylation.	Protein kinase superfamily protein;(source:Araport11)
AT3G44700.1	protein_coding	Plant protein of unknown function		transmembrane protein;(source:Araport11)
AT3G44690.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G44620.1	protein_coding	protein tyrosine phosphatases;protein tyrosine phosphatases		protein-tyrosine phosphatase;(source:Araport11)
AT3G44710.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G44630.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G44640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);transposase IS4 family protein,  contains Pfam profile: PF01609 transposase DDE domain;(source:TAIR10)
AT3G43490.1	protein_coding	Zinc knuckle (CCHC-type) family protein		Zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT3G43500.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.3e-11 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT3G43440.1	protein_coding	jasmonate-zim-domain protein 11		jasmonate-zim-domain protein 11;(source:Araport11)
AT3G43530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15600.1);(source:TAIR10)
AT3G43520.1	protein_coding	Transmembrane proteins 14C		Transmembrane proteins 14C;(source:Araport11)
AT3G43450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G20760.1);(source:TAIR10)
AT3G43540.1	protein_coding	Protein of unknown function (DUF1350)		initiation factor 4F subunit (DUF1350);(source:Araport11)
AT3G43460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G31150.1);(source:TAIR10)
AT3G43470.1	protein_coding	zinc ion binding;nucleic acid binding		zinc ion binding / nucleic acid binding protein;(source:Araport11)
AT3G43480.1	protein_coding			CCHC-type zinc knuckle protein;(source:Araport11)
AT3G51710.1	protein_coding	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain		D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein;(source:Araport11)
AT3G51630.1	protein_coding	with no lysine (K) kinase 5	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.	with no lysine (K) kinase 5;(source:Araport11)
AT3G51720.1	protein_coding	Plant protein of unknown function (DUF827)		WEB family protein (DUF827);(source:Araport11)
AT3G51640.1	protein_coding			stress response NST1-like protein;(source:Araport11)
AT3G51730.1	protein_coding	saposin B domain-containing protein		saposin B domain-containing protein;(source:Araport11)
AT3G51650.1	protein_coding			stress response NST1-like protein;(source:Araport11)
AT3G51740.1	protein_coding	inflorescence meristem receptor-like kinase 2	encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors. The mRNA is cell-to-cell mobile.	inflorescence meristem receptor-like kinase 2;(source:Araport11)
AT3G51660.1	protein_coding	Tautomerase/MIF superfamily protein		Tautomerase/MIF superfamily protein;(source:Araport11)
AT3G51750.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G51670.1	protein_coding	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	PATLs belong to a family of proteins having a Golgi dynamics (GOLD) domain in tandem with the Sec14p-like domain. PATLs are auxin regulated. Quadruple mutants (patl2456)  show altered PIN1 lateralization in root endodermis cells.	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein;(source:Araport11)
AT3G51680.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G51690.1	protein_coding	PIF1 helicase	DNA helicase homolog PIF1.	PIF1 helicase;(source:Araport11)
AT3G51700.1	protein_coding	PIF1 helicase		PIF1 helicase;(source:Araport11)
AT3G28200.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT3G28210.1	protein_coding	zinc finger (AN1-like) family protein	Encodes a putative zinc finger protein (PMZ).	zinc finger (AN1-like) family protein;(source:Araport11)
AT3G28220.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G11670.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Responsible for the final assembly of galactolipids in photosynthetic membranes.  Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE).	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G11700.1	protein_coding	FASCICLIN-like arabinogalactan protein 18 precursor	Fasciclin-like arabinogalactan protein. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan protein 18 precursor;(source:Araport11)
AT3G11680.1	protein_coding	Aluminium activated malate transporter family protein		aluminum activated malate transporter family protein;(source:Araport11)
AT3G11690.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G11640.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G11650.1	protein_coding	NDR1/HIN1-like 2	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus and spermine. Overexpression of the gene induces the expression of PR-1 gene and shows light-dependent 'speck disease-like' symptom on leaves. The gene product is localized to the chloroplast	NDR1/HIN1-like 2;(source:Araport11)
AT3G11660.1	protein_coding	NDR1/HIN1-like 1	encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive.	NDR1/HIN1-like 1;(source:Araport11)
AT3G28780.1	protein_coding	Protein of unknown function (DUF1216)		transmembrane protein, putative (DUF1216);(source:Araport11)
AT3G28830.1	protein_coding	Protein of unknown function (DUF1216)		mucin-like protein, putative (DUF1216);(source:Araport11)
AT3G28790.1	protein_coding	Protein of unknown function (DUF1216)		transmembrane protein, putative (DUF1216);(source:Araport11)
AT3G28840.1	protein_coding	Protein of unknown function (DUF1216)		hypothetical protein (DUF1216);(source:Araport11)
AT3G28800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.5e-23 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G28850.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT3G28730.1	protein_coding	high mobility group	encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1. Along with STP16 binds to the promoter of FLC.	high mobility group;(source:Araport11)
AT3G28740.1	protein_coding	Cytochrome P450 superfamily protein	Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.	Cytochrome P450 superfamily protein;(source:Araport11)
AT3G28720.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G28760.1	protein_coding			3-dehydroquinate synthase;(source:Araport11)
AT3G28750.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G28810.1	protein_coding	Protein of unknown function (DUF1216)		mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216);(source:Araport11)
AT3G28770.1	protein_coding	Protein of unknown function (DUF1216)		transmembrane protein, putative (DUF1216);(source:Araport11)
AT3G28820.1	protein_coding	Protein of unknown function (DUF1216)		mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216);(source:Araport11)
AT3G07150.1	protein_coding			amino acid-ligase;(source:Araport11)
AT3G07230.1	protein_coding	wound-responsive protein-related		wound-responsive protein-like protein;(source:Araport11)
AT3G07220.1	protein_coding	SMAD/FHA domain-containing protein 		SMAD/FHA domain-containing protein;(source:Araport11)
AT3G07140.1	protein_coding	GPI transamidase component Gpi16 subunit family protein		GPI transamidase component Gpi16 subunit family protein;(source:Araport11)
AT3G07210.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G07290.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G07130.1	protein_coding	purple acid phosphatase 15	Encodes PAP15, a purple acid phosphatase with phytase activity.  Expression of PAP15 is developmentally and temporally regulated, with strong expression at the early stages of seedling growth and pollen germination. The expression is also organ/tissue-specific, with strongest expression in the vasculature, pollen grains, and roots. Recombinant PAP protein exhibits broad substrate specificity with moderate phytase activity. PAP15 likely mobilizes phosphorus reserves in plants, particularly during seed and pollen germination.	purple acid phosphatase 15;(source:Araport11)
AT3G07200.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G07280.1	pseudogene			None;(source:Araport11)
AT3G07120.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G07190.1	protein_coding	B-cell receptor-associated protein 31-like 		B-cell receptor-associated protein 31-like protein;(source:Araport11)
AT3G07270.1	protein_coding	GTP cyclohydrolase I		GTP cyclohydrolase I;(source:Araport11)
AT3G07110.1	protein_coding	Ribosomal protein L13 family protein		Ribosomal protein L13 family protein;(source:Araport11)
AT3G07180.1	protein_coding	GPI transamidase component PIG-S-related		GPI transamidase component PIG-S-like protein;(source:Araport11)
AT3G07260.1	protein_coding	SMAD/FHA domain-containing protein 		SMAD/FHA domain-containing protein;(source:Araport11)
AT3G07170.1	protein_coding	Sterile alpha motif (SAM) domain-containing protein		Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G07250.1	protein_coding	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein		RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein;(source:Araport11)
AT3G07160.1	protein_coding	glucan synthase-like 10	Encodes GSL10, a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose.  GSL10 is required for male gametophyte development and plant growth.  Has a role in entry of microspores into mitosis.  GSL10 mutation leads to perturbation of microspore division symmetry, irregular callose deposition and failure of generative cell engulfment by the vegetative cell cytoplasm.  Also refer to GSL8 (At2g36850).	glucan synthase-like 10;(source:Araport11)
AT3G07320.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT3G31910.1	protein_coding	Domain of unknown function (DUF1985)		Ulp1 protease family protein (DUF1985);(source:Araport11)
AT3G31915.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31370.1);(source:TAIR10)
AT3G31900.1	protein_coding	ATP-dependent helicase family protein		ATP-dependent helicase family protein;(source:Araport11)
AT3G28520.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G28530.1	protein_coding	UDP-glucose 4-epimerases		UDP-glucose 4-epimerase;(source:Araport11)
AT3G28540.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G28500.1	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT3G28510.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G50420.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G50430.1	protein_coding			golgin;(source:Araport11)
AT3G50510.1	protein_coding	LOB domain-containing protein 28		LOB domain-containing protein 28;(source:Araport11)
AT3G50440.1	protein_coding	methyl esterase 10	Encodes a protein shown to have methyl jasmonate esterase activity in vitro. This protein does not act on methyl IAA, MeSA, MeGA4, or MEGA9 in vitro.	methylesterase;(source:Araport11)
AT3G50520.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT3G50610.1	protein_coding			DNA-directed RNA polymerase II subunit RPB1-like protein;(source:Araport11)
AT3G50450.1	protein_coding	homolog of RPW8 1	Homolog of RPW8	homolog of RPW8 1;(source:Araport11)
AT3G50530.1	protein_coding	CDPK-related kinase	CDPK-related kinase	CDPK-related kinase;(source:Araport11)
AT3G50620.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G50460.1	protein_coding	homolog of RPW8 2	Homolog of RPW8	homolog of RPW8 2;(source:Araport11)
AT3G50540.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G50470.1	protein_coding	homolog of RPW8 3	Homolog of RPW8	homolog of RPW8 3;(source:Araport11)
AT3G50550.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G50560.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G50480.1	protein_coding	homolog of RPW8 4	Homolog of RPW8	homolog of RPW8 4;(source:Araport11)
AT3G50490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-13 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT3G50570.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G50500.1	protein_coding	SNF1-related protein kinase 2.2	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.  Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth.	SNF1-related protein kinase 2.2;(source:Araport11)
AT3G50580.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G50590.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	WD40/YVTN repeat protein.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G30150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31990.1);(source:TAIR10)
AT3G30160.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G30170.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.2e-51 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G30180.1	protein_coding	brassinosteroid-6-oxidase 2	Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide.  It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide by a Baeyer-Villinger oxidation reaction at C-6, resulting in the formation of an unusual seven-membered lactone ring.  The enzyme possesses high affinity for both C28- and C27-Brassinosteroids. The expression of the gene using a CYP85A2 promoter:LUC fusion construct was shown to be under circadian and light control.	brassinosteroid-6-oxidase 2;(source:Araport11)
AT3G61110.1	protein_coding	ribosomal protein S27	Arabidopsis ribosomal protein	ribosomal protein S27;(source:Araport11)
AT3G61120.1	protein_coding	AGAMOUS-like 13	Encodes AGL13, a member of the AGL6 clade of the MADS-box gene family. Expressed in both pollen and ovules. Functions in male and female gametophyte morphogenesis.	AGAMOUS-like 13;(source:Araport11)
AT3G61200.1	protein_coding	Thioesterase superfamily protein		Thioesterase superfamily protein;(source:Araport11)
AT3G61130.1	protein_coding	galacturonosyltransferase 1	Encodes a protein with  putative galacturonosyltransferase activity. The mRNA is cell-to-cell mobile.	galacturonosyltransferase 1;(source:Araport11)
AT3G61210.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G61300.1	protein_coding	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein		C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT3G61140.1	protein_coding	26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain	Represses photomorphogenesis and induces skotomorphogenesis in the dark. Component of the nuclear-localized COP9 complex. Mutants display striking purple coloration due to anthocyanin accumulation in their cotyledons, first become defective during embryogenesis and exhibit limited seedling development.	COP9 signalosome complex subunit 1;(source:Araport11)
AT3G61220.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	CytADR/SDR1 is an aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on alpha,beta-unsaturated aldehydes with more than 5 carbons in vitro. It can also act on menthone and neomenthol in vitro, but these do not represent likely endogenous activities of this enzyme in planta. GFP-tagged CytADR appears to localize to the cytosol where it likely plays a role in detoxifying reactive carbonyls. sdr1 mutants have altered responses to pathogens. The mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G61310.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT3G61150.1	protein_coding	homeodomain GLABROUS 1	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	homeodomain GLABROUS 1;(source:Araport11)
AT3G61230.1	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT3G61320.1	protein_coding	Bestrophin-like protein	Encodes a bestrophin-like protein (Best1). Located in the stroma thylakoid membrane. Functions as a chloride ion channel. Proposed to modulate proton motive force partitioning by mediating chloride ion influx in the thylakoid lumen. Major isoform (based on transcript analysis), redundant function with AtBest2.	Bestrophin-like protein;(source:Araport11)
AT3G61240.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT3G61330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-252 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G61160.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G61170.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G61250.1	protein_coding	myb domain protein 17	LATE MERISTEM IDENTITY2 (LMI2) is a target of the meristem identity regulator LEAFY (LFY).  Has a role in the meristem identity transition from vegetative growth to flowering. Member of the R2R3 factor gene family.	myb domain protein 17;(source:Araport11)
AT3G61340.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G61180.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G61260.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT3G61350.1	protein_coding	SKP1 interacting partner 4	Encodes an SKP1 interacting partner (SKIP4).	SKP1 interacting partner 4;(source:Araport11)
AT3G61190.1	protein_coding	BON association protein 1	Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.	BON association protein 1;(source:Araport11)
AT3G61270.1	protein_coding	Arabidopsis thaliana protein of unknown function (DUF821)		O-glucosyltransferase rumi-like protein (DUF821);(source:Araport11)
AT3G61360.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes SLO3 (SLOW GROWTH3), a  pentatricopeptide repeat  protein required for the splicing of mitochondrial NADH  dehydrogenase subunit7 intron 2. Mutants have smaller RAMs are slower growing than wild type.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G61280.1	protein_coding	Arabidopsis thaliana protein of unknown function (DUF821)		O-glucosyltransferase rumi-like protein (DUF821);(source:Araport11)
AT3G61290.1	protein_coding	Arabidopsis thaliana protein of unknown function (DUF821)		O-glucosyltransferase rumi-like protein (DUF821);(source:Araport11)
AT3G58660.1	protein_coding	Ribosomal protein L1p/L10e family		Ribosomal protein L1p/L10e family;(source:Araport11)
AT3G58670.1	protein_coding	Protein of unknown function (DUF1637)		2-aminoethanethiol dioxygenase, putative (DUF1637);(source:Araport11)
AT3G58750.1	protein_coding	citrate synthase 2	Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.	citrate synthase 2;(source:Araport11)
AT3G58680.1	protein_coding	multiprotein bridging factor 1B	One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP.  Its expression is developmentally regulated. The mRNA is cell-to-cell mobile.	multiprotein bridging factor 1B;(source:Araport11)
AT3G58760.1	protein_coding	Integrin-linked protein kinase family		Integrin-linked protein kinase family;(source:Araport11)
AT3G58850.1	protein_coding	phy rapidly regulated 2	Encodes PHYTOCHROME RAPIDLY REGULATED2 (PAR2), an atypical basic helix-loop-helix (bHLP) protein.  Closely related to PAR1 (At2g42870).  Up regulated after simulated shade perception.  Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response.  Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).	phy rapidly regulated 2;(source:Araport11)
AT3G58690.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G58770.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G58860.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G58700.1	protein_coding	Ribosomal L5P family protein		Ribosomal L5P family protein;(source:Araport11)
AT3G58780.1	protein_coding	K-box region and MADS-box transcription factor family protein 	One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT3G58950.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G58710.1	protein_coding	WRKY DNA-binding protein 69	member of WRKY Transcription Factor; Group II-e	WRKY DNA-binding protein 69;(source:Araport11)
AT3G58790.1	protein_coding	galacturonosyltransferase 15	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 15;(source:Araport11)
AT3G58880.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G58800.1	protein_coding			secretion-regulating guanine nucleotide exchange factor;(source:Araport11)
AT3G58890.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G58720.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G58730.1	protein_coding	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)		vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD);(source:Araport11)
AT3G58810.1	protein_coding	metal tolerance protein A2	Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high  rates of Zn influx into the root symplasm. Localizes to  the vacuolar membrane.	metal tolerance protein A2;(source:Araport11)
AT3G58900.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G58740.1	protein_coding	citrate synthase 1	Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds.	citrate synthase 1;(source:Araport11)
AT3G58820.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G58910.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G58830.1	protein_coding	haloacid dehalogenase (HAD) superfamily protein	Encodes a phosphatidylglycerophosphate (PGP) phosphatase that localizes to chloroplasts in above ground plant parts and mitochondria in root tips and root hairs and is involved in the synthesis of plastidial Phosphatidylglycerol (PG). This enzyme is responsible for the second step of PG synthesis. Mutants show reduced root growth.	haloacid dehalogenase (HAD) superfamily protein;(source:Araport11)
AT3G58920.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G58840.1	protein_coding	Tropomyosin-related	Encodes PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1. Involved in the morphogenesis and proliferation of peroxisomes and mitochondria.	Tropomyosin-like protein;(source:Araport11)
AT3G58930.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G58940.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G62910.1	protein_coding	Peptide chain release factor 1	Encodes a plastid-localized ribosome release factor 1 that is essential in chloroplast development. Pale green, albino mutant seedlings arrest early in seedling development.	Peptide chain release factor 1;(source:Araport11)
AT3G63000.1	protein_coding	NPL4-like protein 1		NPL4-like protein 1;(source:Araport11)
AT3G62920.1	protein_coding			zinc metalloproteinase aureolysin;(source:Araport11)
AT3G63010.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. The mRNA is cell-to-cell mobile.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G62930.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2 and suppress ORA59 promoter activity.	Thioredoxin superfamily protein;(source:Araport11)
AT3G63020.1	protein_coding	Protein of unknown function (DUF3049)		hypothetical protein (DUF3049);(source:Araport11)
AT3G62940.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G63110.1	protein_coding	isopentenyltransferase 3	Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.	isopentenyltransferase 3;(source:Araport11)
AT3G62950.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2 and suppress ORA59 promoter activity.	Thioredoxin superfamily protein;(source:Araport11)
AT3G63030.1	protein_coding	methyl-CPG-binding domain 4	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain 4;(source:Araport11)
AT3G63120.1	protein_coding	cyclin p1;1		cyclin p1;(source:Araport11)
AT3G62960.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2.	Thioredoxin superfamily protein;(source:Araport11)
AT3G63040.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G63130.1	protein_coding	RAN GTPase activating protein 1	Encodes a RAN GTPase activating protein involved in nuclear import, cell plate formation and mitotic spindle formation.	RAN GTPase activating protein 1;(source:Araport11)
AT3G62970.1	protein_coding	zinc finger (C3HC4-type RING finger) family protein		zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT3G63050.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G63140.1	protein_coding	chloroplast stem-loop binding protein of  41 kDa	Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.	chloroplast stem-loop binding protein of 41 kDa;(source:Araport11)
AT3G63060.1	protein_coding	EID1-like 3	EDL3 is an F-box protein involved that mediated the regulation of abscisic acid signalling.	EID1-like 3;(source:Araport11)
AT3G63150.1	protein_coding	MIRO-related GTP-ase 2	Encodes a calcium binding GTPases that is localized to the mitochondrion and is involved in salt stress response.	MIRO-related GTP-ase 2;(source:Araport11)
AT3G62980.1	protein_coding	F-box/RNI-like superfamily protein	Encodes an auxin receptor that mediates auxin-regulated transcription.  It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin.    As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. Mutations in TIR1 block auxin stimulation of flavonoid synthesis.	F-box/RNI-like superfamily protein;(source:Araport11)
AT3G63070.1	protein_coding	Tudor/PWWP/MBT domain-containing protein	HUA and HUA-LIKE (HULK) genes act redundantly to regulate a subset of essential genes, with some (or all) family members also having specific functions. The mRNA is cell-to-cell mobile.	Tudor/PWWP/MBT domain-containing protein;(source:Araport11)
AT3G62990.1	protein_coding			myelin transcription factor-like protein;(source:Araport11)
AT3G63080.1	protein_coding	glutathione peroxidase 5	Encodes glutathione peroxidase.	glutathione peroxidase 5;(source:Araport11)
AT3G63090.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT3G12090.1	protein_coding	tetraspanin6	TET6 encodes a member of the TETRASPANIN gene family that is expressed in the vascular system and is involved in organ growth redundantly with TET5.	tetraspanin6;(source:Araport11)
AT3G12080.1	protein_coding	GTP-binding family protein	Encodes a putative plastid-targeted GTP-binding protein that is essential for embryogenesis and chloroplast development.	GTP-binding family protein;(source:Araport11)
AT3G12140.1	protein_coding	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein		Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein;(source:Araport11)
AT3G12130.1	protein_coding	KH domain-containing protein / zinc finger (CCCH type) family protein.	KHZ1 is a CCCH zinc-finger and KH domain protein belonging to the  VII subfamily. It is expressed throughout the plant. Highly similar to KHZ2.  khz1 mutants are late flowering and double mutants with khz2 are even more late flowering. Overexpression leads to increased rates of leaf senescence.	KH domain-containing protein / zinc finger (CCCH type) family protein;(source:Araport11)
AT3G12120.1	protein_coding	fatty acid desaturase 2	Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome b5.  Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	fatty acid desaturase 2;(source:Araport11)
AT3G12110.1	protein_coding	actin-11	Encodes an actin that is expressed predominantly during reproductive development.	actin-11;(source:Araport11)
AT3G12100.1	protein_coding	Cation efflux family protein		Cation efflux family protein;(source:Araport11)
AT3G42790.1	protein_coding	alfin-like 3	Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 3;(source:Araport11)
AT3G42800.1	protein_coding			AF-like protein;(source:Araport11)
AT3G42810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18420.1);(source:TAIR10)
AT3G42820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1);(source:TAIR10)
AT3G42830.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G14840.1	protein_coding	Leucine-rich repeat transmembrane protein kinase	Encodes LRR-RLK protein that  is localized to the plasma membrane and is involved in regulation of plant innate immunity to microbes. LIK1 is phosphorylated by CERK1, a kinase involved in chitin perception. The mRNA is cell-to-cell mobile.	Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT3G14860.1	protein_coding	NHL domain-containing protein		NHL domain-containing protein;(source:Araport11)
AT3G14770.1	protein_coding	Nodulin MtN3 family protein		Nodulin MtN3 family protein;(source:Araport11)
AT3G14780.1	protein_coding			callose synthase;(source:Araport11)
AT3G14790.1	protein_coding	rhamnose biosynthesis 3		rhamnose biosynthesis 3;(source:Araport11)
AT3G14810.1	protein_coding	mechanosensitive channel of small conductance-like 5		mechanosensitive channel of small conductance-like 5;(source:Araport11)
AT3G14820.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G14760.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G14830.1	protein_coding			epstein-barr nuclear antigen;(source:Araport11)
AT3G14850.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 41	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 41;(source:Araport11)
AT3G48850.1	protein_coding	phosphate transporter 3;2	Encodes a mitochondrial phosphate transporter. Modulates plant responses to salt stress.	phosphate transporter 3;(source:Araport11)
AT3G48770.1	protein_coding	DNA binding;ATP binding		ATP/DNA binding protein;(source:Araport11)
AT3G48860.1	protein_coding			coiled-coil protein;(source:Araport11)
AT3G48780.1	protein_coding	serine palmitoyltransferase 1	Encodes one of the two LCB2 subunits (LCB2a and LCB2b) of serine palmitoyltransferase, an enzyme involved in sphingolipid biosynthesis. LCB2a and LCB2b are functional redundant. Double mutants are gametophytic lethal. The mRNA is cell-to-cell mobile.	serine palmitoyltransferase 1;(source:Araport11)
AT3G48870.1	protein_coding	Clp ATPase	Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma.  May function redundantly with TIC complex  in chloroplast protein import.	Clp ATPase;(source:Araport11)
AT3G48790.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT3G48880.1	protein_coding	RNI-like superfamily protein	Encodes an F-box protein, SNIPER4, that regulates the turnover of MUSE13 and MUSE14, redundant TRAF proteins serving as adaptors in the SCFCRP1 complex to facilitate the turnover of nucleotide-binding domain and leucine-rich repeats (NLR) immune receptors.	RNI-like superfamily protein;(source:Araport11)
AT3G48800.1	protein_coding	Sterile alpha motif (SAM) domain-containing protein		Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G48890.1	protein_coding	membrane-associated progesterone binding protein 3	putative progesterone-binding protein homolog (Atmp2) mRNA, The mRNA is cell-to-cell mobile.	membrane-associated progesterone binding protein 3;(source:Araport11)
AT3G48810.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G48900.1	protein_coding	single-stranded DNA endonuclease family protein	Encodes one of two GEN1 homologs in Arabidopsis.  It is a member of the class IV Rad2/XPG family of nucleases that processes Holliday junctions in a manner analogous to the HJ resolvases of phages, archaea, and bacteria.	single-stranded DNA endonuclease family protein;(source:Araport11)
AT3G48820.1	protein_coding	Glycosyltransferase family 29 (sialyltransferase) family protein	Encodes a homolog of the animal sialyltransferases but sialyltransferase activity was not detected (Plant Biology 2009, 11:284).  Located in the Golgi apparatus.	Glycosyltransferase family 29 (sialyltransferase) family protein;(source:Araport11)
AT3G48830.1	protein_coding	polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein		tRNA nucleotidyltransferase/polyA polymerase family protein;(source:Araport11)
AT3G48750.1	protein_coding	cell division control 2	A-type cyclin-dependent kinase. Together with its specific inhibitor,  the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during  leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype has reduced fertility with failure to transmit via pollen. Pollen development is arrested at the  second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Phosphorylation of threonine 161 is required for activation of its associated kinase.	cell division control 2;(source:Araport11)
AT3G48760.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT3G48840.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G47350.1	protein_coding	hydroxysteroid dehydrogenase 2	Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include:   At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463).  Two copies of HSD1 and HSD4 exist due to a gene duplication event.  In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.	hydroxysteroid dehydrogenase 2;(source:Araport11)
AT3G47360.1	protein_coding	hydroxysteroid dehydrogenase 3	Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include:   At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463).  Two copies of HSD1 and HSD4 exist due to a gene duplication event.  In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.	hydroxysteroid dehydrogenase 3;(source:Araport11)
AT3G47450.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a protein with similarity to the bacterial YqeH GTPase required for proper ribosome assembly. Mutant analyses show that this protein regulates growth and hormonal signaling and attenuates oxidative stress and reactive oxygen species (ROS). It also seems to be involved in regulating leaf senescence, cell death, nitric oxide biosynthesis in response to ABA but not exogenous H2O2. This protein also appears to be required for proper plastid biogenesis. Levels of several plastid-localized proteins, including RBCL, ClpP1, and the MEP biosynthesis enzymes DXS and DXR are altered in rif1-1 mutants. This protein was originally characterized as a mitrochondrial-localized nitric oxide synthase, but, the synthase activity was later disproven. In addition, new studies with GFP fusion proteins and chloroplast import assays suggest that this protein is found in chloroplasts.  Its localization to the chloroplast is enhanced by S-acylation.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G47290.1	protein_coding	phosphatidylinositol-speciwc phospholipase C8		phosphatidylinositol-speciwc phospholipase C8;(source:Araport11)
AT3G47370.1	protein_coding	Ribosomal protein S10p/S20e family protein		Ribosomal protein S10p/S20e family protein;(source:Araport11)
AT3G47300.1	protein_coding	SELT-like protein precursor		SELT-like protein precursor;(source:Araport11)
AT3G47380.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein	Pectin methylesterase inhibitor that is involved in  resistance to Botrytis cinerea. Affects PME activity during infection to prevent disease.	Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G47310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.3e-79 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G47390.1	protein_coding	cytidine/deoxycytidylate deaminase family protein	Encodes a protein that is believed to function as a pyrimidine reductase involved in riboflavin and FAD biosynthesis. phs1 was identified as a photosensitive mutant that shows reduced growth, chloroplast developmental abnormalities, reduced chlorophyll levels, increased oxidative stress, reduced NADPH/NADP+ ratios, reduced photosystem I electron transport, and reduced photosynthetic protein levels under high light conditions. Many of these abnormal phenotypes likely arise from the reduction in the levels of FAD in the phs1 mutant.	cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT3G47320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37385.1);(source:TAIR10)
AT3G47400.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT3G47330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1);(source:TAIR10)
AT3G47410.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G47340.1	protein_coding	glutamine-dependent asparagine synthase 1	encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	glutamine-dependent asparagine synthase 1;(source:Araport11)
AT3G47420.1	protein_coding	phosphate starvation-induced gene 3	Encodes a Pi starvation-responsive protein AtPS3. A member of the phosphate starvation-induced glycerol-3-phosphate permease gene family: AT3G47420(G3Pp1), AT4G25220(G3Pp2), AT1G30560(G3Pp3), AT4G17550(G3Pp4) and AT2G13100(G3Pp5). Its expression is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.	putative glycerol-3-phosphate transporter 1;(source:Araport11)
AT3G47430.1	protein_coding	peroxin 11B	member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation. The mRNA is cell-to-cell mobile.	peroxin 11B;(source:Araport11)
AT3G47440.1	protein_coding	tonoplast intrinsic protein 5;1	Encodes AtTIP5;1, functions as water and urea channels in pollen. Target promoter of the male germline-specific transcription factor DUO1.	tonoplast intrinsic protein 5;(source:Araport11)
AT3G03310.1	protein_coding	lecithin:cholesterol acyltransferase 3		lecithin:cholesterol acyltransferase 3;(source:Araport11)
AT3G03460.1	protein_coding			mediator of RNA polymerase II transcription subunit-like protein;(source:Araport11)
AT3G03380.1	protein_coding	DegP protease 7	Encodes a putative DegP protease. The mRNA is cell-to-cell mobile.	DegP protease 7;(source:Araport11)
AT3G03450.1	protein_coding	RGA-like 2	Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth.  Negative regulator of the  response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.	RGA-like 2;(source:Araport11)
AT3G03370.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G03440.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G03360.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G03430.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G03350.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G03420.1	protein_coding	Ku70-binding family protein		Ku70-binding family protein;(source:Araport11)
AT3G03340.1	protein_coding	LUC7 related protein		LUC7 related protein;(source:Araport11)
AT3G03410.1	protein_coding	EF hand calcium-binding protein family		EF hand calcium-binding protein family;(source:Araport11)
AT3G03500.1	protein_coding	TatD related DNase		TatD related DNase;(source:Araport11)
AT3G03330.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G03490.1	protein_coding	peroxin 19-1	Encodes one of two PEX19 peroxin isoforms, a cytosolic chaperone for peroxisome membrane proteins (PMPs) that delivers PMPs to the endoplasmic reticulum or peroxisomal membrane. It is predominantly cytosolic, forms dimers, promotes peroxisome function and is essential for viability. The protein is farnesylated in vivo through the actions of ERA1 and PLP.	peroxin 19-1;(source:Araport11)
AT3G03320.1	protein_coding	RNA-binding ASCH domain protein		RNA-binding ASCH domain protein;(source:Araport11)
AT3G03480.1	protein_coding	acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase		acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase;(source:Araport11)
AT3G03400.1	protein_coding	EF hand calcium-binding protein family		EF hand calcium-binding protein family;(source:Araport11)
AT3G03470.1	protein_coding	cytochrome P450, family 87, subfamily A, polypeptide 9	member of CYP89A	cytochrome P450, family 87, subfamily A, polypeptide 9;(source:Araport11)
AT3G31330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34855.1);(source:TAIR10)
AT3G31350.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G31310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1);(source:TAIR10)
AT3G31360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.2e-25 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G31320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40133.1);(source:TAIR10)
AT3G31370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31915.1);(source:TAIR10)
AT3G31410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32140.1);(source:TAIR10)
AT3G31380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.2e-20 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G31300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32903.1);(source:TAIR10)
AT3G31390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.6e-31 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G31340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.3e-111 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G31420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.2e-45 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G31510.1	pseudogene			pseudogene of Nucleic acid-binding proteins superfamily;(source:Araport11)
AT3G31430.1	protein_coding			zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT3G31530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.7e-172 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT3G31540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1);(source:TAIR10)
AT3G31500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.9e-82 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G31450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 9.3e-64 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G31490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.2e-123 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G31460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);retroelement pol polyprotein -related;(source:TAIR10)
AT3G31470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.7e-22 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G31440.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, blastp match of 41%25 identity and 1.3e-254 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G55350.1	protein_coding	PIF / Ping-Pong family of plant transposases		PIF / Ping-Pong family of plant transposase;(source:Araport11)
AT3G55440.1	protein_coding	triosephosphate isomerase	Encodes triosephosphate isomerase.	triosephosphate isomerase;(source:Araport11)
AT3G55360.1	protein_coding	3-oxo-5-alpha-steroid 4-dehydrogenase family protein	Enoyl-CoA reductase is involved in all very long chain fatty acids (VLCFA) elongation reactions that are required for cuticular wax, storage lipid and sphingolipid metabolism. The protein is located in the ER, but in contrast to its yeast homolog TSC13 is not particularly enriched in the nuclear envelope-vacuole junction. Mutants in this gene show abnormal organ morphology and stem glossiness. Cells in all tissues are only about 1/3 of the size of wild type cells. The morphological changes are most likely to result from the reduction in the VLCFA content of sphingolipids. Mutants also show abnormalities in the endocytic membrane organization and transport as well as reduced trichome papillae.	3-oxo-5-alpha-steroid 4-dehydrogenase family protein;(source:Araport11)
AT3G55450.1	protein_coding	PBS1-like 1		PBS1-like 1;(source:Araport11)
AT3G55370.1	protein_coding	OBF-binding protein 3	Encodes a nuclear localized Dof domain containing transcription factor expressed primarily in roots. Responsive to salicylic acid. Transgenic overexpressors have yellow leaves and short, defective roots.	OBF-binding protein 3;(source:Araport11)
AT3G55540.1	protein_coding	nuclear transport factor 2 (NTF2) family protein		nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT3G55460.1	protein_coding	SC35-like splicing factor 30	encodes an SC35-like splicing factor that is localized to nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. The mRNA is cell-to-cell mobile.	SC35-like splicing factor 30;(source:Araport11)
AT3G55380.1	protein_coding	ubiquitin-conjugating enzyme 14		ubiquitin-conjugating enzyme 14;(source:Araport11)
AT3G55550.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G55470.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G55390.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT3G55560.1	protein_coding	AT-hook protein of GA feedback 2		AT-hook protein of GA feedback 2;(source:Araport11)
AT3G55480.1	protein_coding	protein affected traf&#64257;cking 2	Encodes PAT2, a putative beta-subunit of adaptor protein complex 3 (AP-3) that can partially complement the corresponding yeast mutant. Mediates the biogenesis and function of lytic vacuoles.	protein affected traf%26#64257;(source:Araport11)
AT3G55400.1	protein_coding	methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS)		methionyl-tRNA synthetase / methionine-tRNA ligase / MetRS (cpMetRS);(source:Araport11)
AT3G55570.1	protein_coding			cytoplasmic tRNA 2-thiolation protein;(source:Araport11)
AT3G55410.1	protein_coding	2-oxoglutarate dehydrogenase, E1 component		2-oxoglutarate dehydrogenase, E1 component;(source:Araport11)
AT3G55500.1	protein_coding	expansin A16	expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A16;(source:Araport11)
AT3G55420.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G55510.1	protein_coding	Noc2p family	Encodes a regulator of floral determinacy in that interacts with both nucleolar and nucleoplasmic proteins.	Noc2p family;(source:Araport11)
AT3G55430.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT3G55520.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein		FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G55530.1	protein_coding	RING/U-box superfamily protein	Encodes an intracellular membrane localized protein with E3 ligase activity, found in the ER with the C-terminus facing the cytoplasm. It is involved in regulation of ABA signaling. Loss of function alleles show decreased sensitivity to ABA. Overexpression results in increased sensitivity to ABA.	RING/U-box superfamily protein;(source:Araport11)
AT3G10140.1	protein_coding	RECA homolog 3	Encodes a gene involved in plant mitochondrial recombination surveillance. Disruption of this gene in combination with a mutation in MSH1 results in extensive rearrangement of the mitochondrial genome and dramatic changes in plant growth.	RECA homolog 3;(source:Araport11)
AT3G10130.1	protein_coding	SOUL heme-binding family protein		SOUL heme-binding family protein;(source:Araport11)
AT3G10160.1	protein_coding	DHFS-FPGS homolog C	Encodes a protein with tetrahydrofolylpolyglutamate synthase activity that is located in the mitochondrial matrix. One of the three folylpolyglutamate synthetase isoforms (FPGSs): FPGS1 (At5g05980, plastidic), FPGS2 (At3g10160, mitochondrial) and FPGS3 (At3g55630, cytosolic).	DHFS-FPGS homolog C;(source:Araport11)
AT3G10070.1	protein_coding	TBP-associated factor 12	Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12.	TBP-associated factor 12;(source:Araport11)
AT3G10150.1	protein_coding	purple acid phosphatase 16		purple acid phosphatase 16;(source:Araport11)
AT3G10060.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein		FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G09990.1	protein_coding	Nucleoside transporter family protein		Nucleoside transporter family protein;(source:Araport11)
AT3G10120.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G10050.1	protein_coding	L-O-methylthreonine resistant 1	first enzyme in the biosynthetic pathway of isoleucine	L-O-methylthreonine resistant 1;(source:Araport11)
AT3G09980.1	protein_coding	Family of unknown function (DUF662) 	Encodes ACIP1, a microtubules-associated protein required for bacterial immunity. The mRNA is cell-to-cell mobile.	ankyrin repeat 30A-like protein (DUF662);(source:Araport11)
AT3G10110.1	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein		Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT3G10040.1	protein_coding	sequence-specific DNA binding transcription factors	Encodes HRA1 (HYPOXIA RESPONSE ATTENUATOR1), a low oxygen-inducible transcription factor.	sequence-specific DNA binding transcription factor;(source:Araport11)
AT3G10100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1);(source:TAIR10)
AT3G10030.1	protein_coding	aspartate/glutamate/uridylate kinase family protein		aspartate/glutamate/uridylate kinase family protein;(source:Araport11)
AT3G10090.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT3G10020.1	protein_coding			plant/protein;(source:Araport11)
AT3G10080.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT3G10010.1	protein_coding	demeter-like 2	Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks.	demeter-like 2;(source:Araport11)
AT3G10000.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G44370.1	protein_coding	Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain	Member of the Oxa1 super family protein insertases. Involved in biogenesis of mitochondrial respiratory chain complex IV, specifically via membrane insertion of COX2.	Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT3G44380.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT3G44400.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G44410.1	pseudogene			pseudogene of Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G44330.1	protein_coding			M28 Zn-peptidase nicastrin;(source:Araport11)
AT3G44340.1	protein_coding	clone eighty-four	homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions.	hypothetical protein;(source:Araport11)
AT3G44430.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G44350.1	protein_coding	NAC domain containing protein 61		NAC domain containing protein 61;(source:Araport11)
AT3G01260.1	protein_coding	Galactose mutarotase-like superfamily protein		Galactose mutarotase-like superfamily protein;(source:Araport11)
AT3G47780.1	protein_coding	ABC2 homolog 6	member of ATH subfamily The mRNA is cell-to-cell mobile.	ABC2 homolog 6;(source:Araport11)
AT3G47870.1	protein_coding	LOB domain-containing protein 27	Required for normal cell division during pollen development.  Mutant has extra cell in pollen of vegetative cell identity. Male gametophytic mutation.	LOB domain-containing protein 27;(source:Araport11)
AT3G47790.1	protein_coding	ABC2 homolog 7		ABC2 homolog 7;(source:Araport11)
AT3G47710.1	protein_coding	BANQUO 3	BNQ3 belongs to a family of  atypical non-DNA binding basic helix-loop-helix (bHLH) proteins that heterodimerize with and negatively regulate bHLH  transcription factors. Directly and negatively regulated by AP3 and PI in petals. Required for appropriate regulation of flowering time.May also have a role in regulating light responses.	BANQUO 3;(source:Araport11)
AT3G47800.1	protein_coding	Galactose mutarotase-like superfamily protein		Galactose mutarotase-like superfamily protein;(source:Araport11)
AT3G47720.1	protein_coding	similar to RCD one 4	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.	similar to RCD one 4;(source:Araport11)
AT3G47810.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein	Homolog of yeast retromer subunit VPS29.  Part of a retromer-like protein complex involved in endosome to lysosome protein transport.	Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT3G47730.1	protein_coding	ATP-binding cassette A2	member of ATH subfamily	ATP-binding cassette A2;(source:Araport11)
AT3G47820.1	protein_coding	PLANT U-BOX 39		PLANT U-BOX 39;(source:Araport11)
AT3G47740.1	protein_coding	ABC2 homolog 2	member of ATH subfamily	ABC2 homolog 2;(source:Araport11)
AT3G47830.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT3G47750.1	protein_coding	ATP binding cassette subfamily A4	member of ATH subfamily	ATP binding cassette subfamily A4;(source:Araport11)
AT3G47840.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G47760.1	protein_coding	ABC2 homolog 4		ABC2 homolog 4;(source:Araport11)
AT3G47850.1	protein_coding			tRNA (Ile)-lysidine synthase;(source:Araport11)
AT3G47860.1	protein_coding	chloroplastic lipocalin	Encodes a chloroplastic lipocalin AtCHL.  Located in thylakoid lumen. Involved in the protection of thylakoidal membrane lipids against reactive oxygen species, especially singlet oxygen, produced upon excess light. LCNP is required for sustained photoprotective energy dissipation or NPQ (qH) to occur (PMID:29233855).	chloroplastic lipocalin;(source:Araport11)
AT3G47770.1	protein_coding	ABC2 homolog 5		ABC2 homolog 5;(source:Araport11)
AT3G48230.1	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal peptidase (DUF239);(source:Araport11)
AT3G48150.1	protein_coding	anaphase-promoting complex subunit 8	anaphase-promoting complex or cyclosome subunit	anaphase-promoting complex subunit 8;(source:Araport11)
AT3G48160.1	protein_coding	DP-E2F-like 1	E2F-like protein, an inhibitor of the endocycle, preserves the mitotic state of proliferating cells by suppressing transcription of genes that are required for cells to enter the DNA endoreduplication cycle.	DP-E2F-like 1;(source:Araport11)
AT3G48170.1	protein_coding	aldehyde dehydrogenase 10A9	ALDH10A9 encodes a protein that can function as a betaine aldehyde dehydrogenase in vitro. The C-terminal amino acids of this protein direct GFP to the peroxisome suggesting that ALDH10A9 accumulates in this organelle. ALDH10A9 transcript levels rise in response to ABA, NaCl, chilling, methyl viologen, and dehydration stress. The enzyme can catalyze the formation of glycine betaine in vitro, but there are still questions about whether Arabidopsis makes this protective compound under natural conditions. This enzyme may be involved in oxidizing aminoaldehydes formed through polyamine metabolism.	aldehyde dehydrogenase 10A9;(source:Araport11)
AT3G48180.1	protein_coding			CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase;(source:Araport11)
AT3G48190.1	protein_coding	ataxia-telangiectasia mutated	Encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder.  Characterization of mutants suggest a role homologous recombination for DNA damage repair in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.	Serine/Threonine-kinase ATM-like protein;(source:Araport11)
AT3G48200.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G48130.1	pseudogene		Ribosomal protein L13 homolog.Evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of breast basic conserved 1;(source:Araport11)
AT3G48220.1	protein_coding			F-box protein;(source:Araport11)
AT3G48210.1	protein_coding			kinetochore protein;(source:Araport11)
AT3G48140.1	protein_coding	B12D protein		B12D protein;(source:Araport11)
AT3G52280.1	protein_coding	general transcription factor group E6	Bromodomain containing nuclear-localized protein involved in leaf development. GTE6 binds to the promoter and intron of AS1 and regulates its expression via histone acetylation.	general transcription factor group E6;(source:Araport11)
AT3G52290.1	protein_coding	IQ-domain 3	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 3;(source:Araport11)
AT3G52300.1	protein_coding	ATP synthase D chain, mitochondrial		ATP synthase D chain;(source:Araport11)
AT3G52310.1	protein_coding	ABC-2 type transporter family protein		ABC transporter G family member 27;(source:Araport11)
AT3G52240.1	protein_coding			transcriptional regulator ATRX;(source:Araport11)
AT3G52320.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G52250.1	protein_coding	Duplicated homeodomain-like superfamily protein	Encodes a protein with a putative role in mRNA splicing. The mRNA is cell-to-cell mobile.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT3G52330.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G52260.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT3G52340.1	protein_coding	sucrose-6F-phosphate phosphohydrolase 2	sucrose-phosphatase (SPP2)	sucrose-6F-phosphate phosphohydrolase 2;(source:Araport11)
AT3G52350.1	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT3G52270.1	protein_coding	Transcription initiation factor IIF, beta subunit		Transcription initiation factor IIF, beta subunit;(source:Araport11)
AT3G52360.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G52370.1	protein_coding	FASCICLIN-like arabinogalactan protein 15 precursor	Fasciclin-like arabinogalactan protein. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan protein 15 precursor;(source:Araport11)
AT3G29780.1	protein_coding	ralf-like 27	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 27;(source:Araport11)
AT3G29770.1	protein_coding	methyl esterase 11	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	methyl esterase 11;(source:Araport11)
AT3G55270.1	protein_coding	mitogen-activated protein kinase phosphatase 1	Encodes MAP kinase phosphatase 1 (MKP1).  Loss of MKP1 results in hypersensitivity to acute UV-B stress, but without impairing UV-B acclimation.	mitogen-activated protein kinase phosphatase 1;(source:Araport11)
AT3G55190.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G55280.1	protein_coding	ribosomal protein L23AB	60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA	ribosomal protein L23AB;(source:Araport11)
AT3G55200.1	protein_coding	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein	Encodes a spliceosomal protein that is required for proper reproduction.  RNAi lines display low pollen viability,caused by a defect in the transition from microspore to bicellular stage during pollen development.	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein;(source:Araport11)
AT3G55290.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G55210.1	protein_coding	NAC domain containing protein 63		NAC domain containing protein 63;(source:Araport11)
AT3G55300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.5e-28 P-value blast match to GB:CAA37924 orf 2 (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G55310.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G55130.1	protein_coding	white-brown complex homolog 19	Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.	white-brown complex homolog 19;(source:Araport11)
AT3G55220.1	protein_coding	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein	Encodes a spliceosomal protein that is required for proper reproduction.  RNAi lines display low pollen viability,caused by a defect in the transition from microspore to bicellular stage during pollen development.	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein;(source:Araport11)
AT3G55140.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G55150.1	protein_coding	exocyst subunit exo70 family protein H1	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein H1;(source:Araport11)
AT3G55230.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT3G55320.1	protein_coding	P-glycoprotein  20		P-glycoprotein 20;(source:Araport11)
AT3G55160.1	protein_coding		THADA is an orphan gene in Arabidopsis thaliana. It is the only DUF2428 domain containing protein in the genome.	thyroid adenoma-associated-like protein;(source:Araport11)
AT3G55240.1	protein_coding	Plant protein 1589 of unknown function	Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype.	Plant protein 1589 of unknown function;(source:Araport11)
AT3G55330.1	protein_coding	PsbP-like protein 1		PsbP-like protein 1;(source:Araport11)
AT3G55170.1	protein_coding	Ribosomal L29 family protein 		Ribosomal L29 family protein;(source:Araport11)
AT3G55250.1	protein_coding		Encodes a nucleus-encoded protein, Photosystem I Assembly 3 (PSA3), that is required for PSI accumulation.	calcium homeostasis regulator;(source:Araport11)
AT3G55340.1	protein_coding	phragmoplastin interacting protein 1	Plant-specific protein. Interacts with phragmoplastin, Rop1 and Rop2. Involved in cell plate formation.	phragmoplastin interacting protein 1;(source:Araport11)
AT3G55180.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G55260.1	protein_coding	beta-hexosaminidase 1	Encodes a protein with &#946;-hexosaminidase activity (the enzyme is active with p-nitrophenyl-&#946;-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-&#946;-N-acetylgalactosaminide). The enzyme displays no distinct preference for a specific terminal GlcNAc residue and indeed cleaved the asialoagalactodabsylglycopeptide GnGn to a mixture of products.	beta-hexosaminidase 1;(source:Araport11)
AT3G42150.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G42160.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G42170.1	protein_coding	BED zinc finger ;hAT family dimerisation domain	transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner.	BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER;(source:Araport11)
AT3G42180.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT3G04410.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein		NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT3G04500.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G04420.1	protein_coding	NAC domain containing protein 48		NAC domain containing protein 48;(source:Araport11)
AT3G04510.1	protein_coding	Protein of unknown function (DUF640)		LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
AT3G04430.1	protein_coding	NAC domain containing protein 49		NAC domain containing protein 49;(source:Araport11)
AT3G04520.1	protein_coding	threonine aldolase 2	Encodes a threonine aldolase, involved in threonine degradation to glycine. Expressed in vascular tissue through out the plant.	threonine aldolase 2;(source:Araport11)
AT3G04440.1	protein_coding	Plasma-membrane choline transporter family protein		Plasma-membrane choline transporter family protein;(source:Araport11)
AT3G04370.1	protein_coding	plasmodesmata-located protein 4	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	plasmodesmata-located protein 4;(source:Araport11)
AT3G04530.1	protein_coding	phosphoenolpyruvate carboxylase kinase 2	Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light and is responsive to both phosphate (Pi) and phosphite (Phi) in shoots.	phosphoenolpyruvate carboxylase kinase 2;(source:Araport11)
AT3G04450.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G04380.1	protein_coding	SET-domain containing protein lysine methyltransferase family protein	Encodes SUVR4, a nucleolar histone methyltransferase with preference for monomethylated H3K9.  One of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT3G04460.1	protein_coding	peroxin-12	RING finger protein involved in peroxisome biogenesis.  Also involved in peroxisomal import of nitric oxide synthase. Has been demonstrated to have E3 ubiquitin ligase activity.	peroxin-12;(source:Araport11)
AT3G04470.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT3G04390.1	protein_coding	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein		Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein;(source:Araport11)
AT3G04480.1	protein_coding	endoribonucleases		endoribonuclease;(source:Araport11)
AT3G04400.1	protein_coding	Ribosomal protein L14p/L23e family protein		Ribosomal protein L14p/L23e family protein;(source:Araport11)
AT3G04490.1	protein_coding			exportin-4 protein;(source:Araport11)
AT3G60920.1	protein_coding			beige/BEACH domain protein;(source:Araport11)
AT3G60930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1);(source:TAIR10)
AT3G61010.1	protein_coding	Ferritin/ribonucleotide reductase-like family protein		Ferritin/ribonucleotide reductase-like family protein;(source:Araport11)
AT3G60940.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G61020.1	pseudogene			pseudogene of TRICHOME BIREFRINGENCE-LIKE 32;(source:Araport11)
AT3G60950.1	protein_coding	C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase		C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase;(source:Araport11)
AT3G61030.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G60960.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G61040.1	protein_coding	cytochrome P450, family 76, subfamily C, polypeptide 7	encodes a protein with cytochrome P450 domain	cytochrome P450, family 76, subfamily C, polypeptide 7;(source:Araport11)
AT3G60970.1	protein_coding	multidrug resistance-associated protein 15	member of MRP subfamily	multidrug resistance-associated protein 15;(source:Araport11)
AT3G61050.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	Encodes a novel transcriptional regulator, a calcium-dependent lipid-binding protein containing a C2 domain, that binds specifically to the promoter of THAS1 (thalianol synthase 1).  It can bind ceramide and is involved in drought and salt tolerance.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G61060.1	protein_coding	phloem protein 2-A13		phloem protein 2-A13;(source:Araport11)
AT3G60980.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G60990.1	protein_coding	Domain of unknown function (DUF23)		glycosyltransferase family protein (DUF23);(source:Araport11)
AT3G61070.1	protein_coding	peroxin 11E	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.	peroxin 11E;(source:Araport11)
AT3G61080.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G61090.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G61100.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G43720.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G43810.1	protein_coding	calmodulin 7	EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant.	calmodulin 7;(source:Araport11)
AT3G43730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to ring-infested erythrocyte surface antigen, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287;(source:TAIR10)
AT3G43820.1	pseudogene			pseudogene of Copper amine oxidase family protein;(source:Araport11)
AT3G43740.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G43830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.0e-15 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi);(source:TAIR10)
AT3G43750.1	protein_coding	RING/U-box protein with C6HC-type zinc finger domain		RING/U-box protein with C6HC-type zinc finger domain-containing protein;(source:Araport11)
AT3G43840.1	protein_coding	3-oxo-5-alpha-steroid 4-dehydrogenase family protein		3-oxo-5-alpha-steroid 4-dehydrogenase family protein;(source:Araport11)
AT3G43760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1);(source:TAIR10)
AT3G43850.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45230.1);(source:TAIR10)
AT3G43860.1	protein_coding	glycosyl hydrolase 9A4		glycosyl hydrolase 9A4;(source:Araport11)
AT3G43780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, predicted proteins, Arabidopsis thaliana;(source:TAIR10)
AT3G43790.1	protein_coding	zinc induced facilitator-like 2		zinc induced facilitator-like 2;(source:Araport11)
AT3G43800.1	protein_coding	glutathione S-transferase tau 27	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). The mRNA is cell-to-cell mobile.	glutathione S-transferase tau 27;(source:Araport11)
AT3G48480.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G48360.1	protein_coding	BTB and TAZ domain protein 2	Encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development. BT2 also mediates multiple responses to nutrients, stresses, and hormones.	BTB and TAZ domain protein 2;(source:Araport11)
AT3G48490.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G48370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.2e-35 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT3G48500.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT3G48390.1	protein_coding	MA3 domain-containing protein		MA3 domain-containing protein;(source:Araport11)
AT3G48410.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G48420.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G48440.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT3G48460.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G48450.1	protein_coding	RPM1-interacting protein 4 (RIN4) family protein		RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT3G48250.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes a pentatricopeptide repeat protein implicated in splicing of intron 1 of mitochondrial nad7 transcripts.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G12480.1	protein_coding	nuclear factor Y, subunit C11		nuclear factor Y, subunit C11;(source:Araport11)
AT3G12630.1	protein_coding	A20/AN1-like zinc finger family protein	Encodes a protein with E3 ligase activity that acts as a positive regulator of stress responses in Arabidopsis.	A20/AN1-like zinc finger family protein;(source:Araport11)
AT3G12580.1	protein_coding	heat shock protein 70		heat shock protein 70;(source:Araport11)
AT3G12570.1	protein_coding	FYD		FYD;(source:Araport11)
AT3G12560.1	protein_coding	TRF-like 9	Encodes a telomeric DNA-binding protein.	TRF-like 9;(source:Araport11)
AT3G12550.1	protein_coding	XH/XS domain-containing protein	Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).	XH/XS domain-containing protein;(source:Araport11)
AT3G12540.1	protein_coding	Protein of unknown function, DUF547		ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT3G12530.1	protein_coding	PSF2		PSF2;(source:Araport11)
AT3G49000.1	protein_coding	RNA polymerase III subunit RPC82 family protein		RNA polymerase III subunit RPC82 family protein;(source:Araport11)
AT3G48920.1	protein_coding	myb domain protein 45	Member of the R2R3 factor gene family.	myb domain protein 45;(source:Araport11)
AT3G48930.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT3G49010.1	protein_coding	breast basic conserved 1	Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).	breast basic conserved 1;(source:Araport11)
AT3G49100.1	protein_coding	Signal recognition particle, SRP9/SRP14 subunit		Signal recognition particle, SRP9/SRP14 subunit;(source:Araport11)
AT3G49020.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT3G48940.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT3G49030.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT3G48950.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G49040.1	protein_coding	F-box/RNI-like superfamily protein		F-box/FBD/LRR protein;(source:Araport11)
AT3G48960.1	protein_coding	Ribosomal protein L13e family protein		Ribosomal protein L13e family protein;(source:Araport11)
AT3G49050.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G48970.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G49060.1	protein_coding	U-box domain-containing protein kinase family protein		U-box domain-containing protein kinase family protein;(source:Araport11)
AT3G48980.1	protein_coding	Arabidopsis thaliana protein of unknown function (DUF821)		O-glucosyltransferase rumi-like protein (DUF821);(source:Araport11)
AT3G49070.1	protein_coding	Protein of unknown function (DUF677)		transmembrane protein, putative (DUF677);(source:Araport11)
AT3G48990.1	protein_coding	AMP-dependent synthetase and ligase family protein	Encodes an oxalyl-CoA synthetase and is required for oxalate degradation, for normal seed development, and for defense against an oxalate-producing fungal pathogen.	AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT3G49080.1	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein	Mitochondrial ribosomal protein, similar to RPS9 from E.coli. Loss of function results in gametophyte lethality, particularly  the megagametophyte.	Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT3G60030.1	protein_coding	squamosa promoter-binding protein-like 12		squamosa promoter-binding protein-like 12;(source:Araport11)
AT3G60120.1	protein_coding	beta glucosidase 27		beta glucosidase 27;(source:Araport11)
AT3G60040.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G60130.1	protein_coding	beta glucosidase 16		beta glucosidase 16;(source:Araport11)
AT3G60050.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G60140.1	protein_coding	Glycosyl hydrolase superfamily protein	Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. The mRNA is cell-to-cell mobile.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT3G60060.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G60150.1	protein_coding	Protein of unknown function (DUF498/DUF598)		NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598);(source:Araport11)
AT3G60070.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G60080.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G60160.1	protein_coding	multidrug resistance-associated protein 9	member of MRP subfamily	multidrug resistance-associated protein 9;(source:Araport11)
AT3G60090.1	protein_coding	VQ motif-containing protein	VQ26 is an ABA responsive gene and interacts with the ABI5 transcription factor. Along with its paralog VQ18, it is involved in negative regulation of ABA responses during early seedling development.	VQ motif-containing protein;(source:Araport11)
AT3G60100.1	protein_coding	citrate synthase 5		citrate synthase 5;(source:Araport11)
AT3G60110.1	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT3G19530.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G19540.1	protein_coding	Protein of unknown function (DUF620)		glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620);(source:Araport11)
AT3G19550.1	protein_coding			glutamate racemase;(source:Araport11)
AT3G19553.1	protein_coding	Amino acid permease family protein	Encodes POLYAMINE UPTAKE TRANSPORTER 5, an amino acid permease family protein.	Amino acid permease family protein;(source:Araport11)
AT3G19520.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT3G42490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35080.1);(source:TAIR10)
AT3G42500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44860.1);(source:TAIR10)
AT3G42510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44870.1);(source:TAIR10)
AT3G42440.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1);(source:TAIR10)
AT3G42530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G10350.1);(source:TAIR10)
AT3G42520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44875.1);(source:TAIR10)
AT3G42450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT1G42630.1);(source:TAIR10)
AT3G42540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43940.1);(source:TAIR10)
AT3G42460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05570.1);(source:TAIR10)
AT3G42550.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G42470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 2.0e-16 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT3G42480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03979.1);(source:TAIR10)
AT3G44760.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G44770.1	protein_coding	Protein of unknown function (DUF626)		transmembrane protein, putative (DUF626);(source:Araport11)
AT3G44780.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G44790.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G44720.1	protein_coding	arogenate dehydratase 4	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis.  Not less than six genes encoding ADT were identi&#64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250]. The mRNA is cell-to-cell mobile.	arogenate dehydratase 4;(source:Araport11)
AT3G44810.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G44800.1	protein_coding	Meprin and TRAF (MATH) homology domain-containing protein		Meprin and TRAF (MATH) homology domain-containing protein;(source:Araport11)
AT3G44730.1	protein_coding	kinesin-like protein 1		kinesin-like protein 1;(source:Araport11)
AT3G44740.1	protein_coding	Class II aaRS and biotin synthetases superfamily protein		Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT3G44750.1	protein_coding	histone deacetylase 3	Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots. Involved in development of the vascular tissue of the stem by affecting cell proliferation and differentiation.	histone deacetylase 3;(source:Araport11)
AT3G50710.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT3G50630.1	protein_coding	KIP-related protein 2	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.  Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation.	KIP-related protein 2;(source:Araport11)
AT3G50640.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G50720.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G50650.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT3G50660.1	protein_coding	Cytochrome P450 superfamily protein	Encodes a 22&#945; hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele  with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively  regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.	Cytochrome P450 superfamily protein;(source:Araport11)
AT3G50670.1	protein_coding	U1 small nuclear ribonucleoprotein-70K	Encodes U1 snRNP 70K	U1 small nuclear ribonucleoprotein-70K;(source:Araport11)
AT3G50680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative reverse transcriptase;(source:TAIR10)
AT3G50690.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G50700.1	protein_coding	indeterminate(ID)-domain 2	zinc finger protein, similar to maize Indeterminate1 (ID1)	indeterminate(ID)-domain 2;(source:Araport11)
AT3G30730.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G30740.1	pseudogene			pseudogene of Ribosomal protein S25 family protein;(source:Araport11)
AT3G60600.1	protein_coding	vesicle associated protein	Encodes VAP27 (for Vesicle-Associated Protein).  VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals.  May be involved in vesicular transport to or from the ER.  Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2.	vesicle associated protein;(source:Araport11)
AT3G60690.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G60610.1	pseudogene			pseudogene of pre-mRNA processing ribonucleoprotein binding region-containing protein;(source:Araport11)
AT3G60700.1	protein_coding	Protein of unknown function (DUF1163)		hypothetical protein (DUF1163);(source:Araport11)
AT3G60620.1	protein_coding	cytidinediphosphate diacylglycerol synthase 5		cytidinediphosphate diacylglycerol synthase 5;(source:Araport11)
AT3G60790.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G60710.1	protein_coding	F-box family protein	F-box family protein.	F-box family protein;(source:Araport11)
AT3G60630.1	protein_coding	GRAS family transcription factor	Belongs to one of the LOM (LOST MERISTEMS) genes: AT2G45160 (LOM1), AT3G60630 (LOM2) and AT4G00150 (LOM3). LOM1 and LOM2 promote cell differentiation at the periphery of shoot meristems and help to maintain their polar organization.	GRAS family transcription factor;(source:Araport11)
AT3G60800.1	protein_coding	DHHC-type zinc finger family protein	Encodes a protein S-acyltransferase that, together with PAT13, cooperatively regulates leaf senescence.	DHHC-type zinc finger family protein;(source:Araport11)
AT3G60720.1	protein_coding	plasmodesmata-located protein 8	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	plasmodesmata-located protein 8;(source:Araport11)
AT3G60640.1	protein_coding	Ubiquitin-like superfamily protein	Autophagy protein.	Ubiquitin-like superfamily protein;(source:Araport11)
AT3G60890.1	protein_coding	protein binding		binding protein;(source:Araport11)
AT3G60810.1	protein_coding			DUF1499 family protein;(source:Araport11)
AT3G60650.1	protein_coding		Encodes a peptide involved in the regulation of lateral root development and root growth pattern.	transmembrane protein;(source:Araport11)
AT3G60730.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT3G60900.1	protein_coding	FASCICLIN-like arabinogalactan-protein 10	Fasciclin-like arabinogalactan protein. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan-protein 10;(source:Araport11)
AT3G60820.1	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	Encodes 20S proteasome beta subunit PBF1 (PBF1).	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT3G60660.1	protein_coding			spindle/kinetochore-associated-like protein;(source:Araport11)
AT3G60740.1	protein_coding	ARM repeat superfamily protein	Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.	ARM repeat superfamily protein;(source:Araport11)
AT3G60910.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G60830.1	protein_coding	actin-related protein 7	Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission.	actin-related protein 7;(source:Araport11)
AT3G60750.1	protein_coding	Transketolase		Transketolase;(source:Araport11)
AT3G60840.1	protein_coding	microtubule-associated protein 65-4	Encodes MAP65-4, a non-motor microtubule associated protein (MAP) that belongs to the evolutionarily conserved MAP65 family. MAP65-4 specifically associates with the forming mitotic spindle during prophase and with the kinetochore fibers from prometaphase to the end of anaphase. MAP65-4 cross-links microtubules and promotes microtubule bundle elongation.	microtubule-associated protein 65-4;(source:Araport11)
AT3G60670.1	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT3G60760.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G60680.1	protein_coding	Plant protein of unknown function (DUF641)		DUF641 family protein (DUF641);(source:Araport11)
AT3G60850.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G60770.1	protein_coding	Ribosomal protein S13/S15		Ribosomal protein S13/S15;(source:Araport11)
AT3G60860.1	protein_coding	SEC7-like guanine nucleotide exchange family protein	Encodes one of the functionally redundant ARF guanine-nucleotide exchange factors (ARF-GEFs). Functions as regulators of post-Golgi trafficking. The mRNA is cell-to-cell mobile.	SEC7-like guanine nucleotide exchange family protein;(source:Araport11)
AT3G60780.1	protein_coding	Protein of unknown function (DUF1442)		hypothetical protein (DUF1442);(source:Araport11)
AT3G60870.1	protein_coding	AT-hook motif nuclear-localized protein 18	Encodes an AT hook domain containing protein that, when overexpressed, delays flowering.	AT-hook motif nuclear-localized protein 18;(source:Araport11)
AT3G60880.1	protein_coding	dihydrodipicolinate synthase 1	Encodes a dihydropicolinate synthase involved in lysine biosynthesis. The enzyme is allosterically inhibited by lysine. It is predicted to localize to the cholorplast.	dihydrodipicolinate synthase 1;(source:Araport11)
AT3G53230.1	protein_coding	ATPase, AAA-type, CDC48 protein	CDC48 is induced upon oilseed rape mosaic tobamovirus infection and appears to be involved in controlling virus movement.	ATPase, AAA-type, CDC48 protein;(source:Araport11)
AT3G53150.1	protein_coding	UDP-glucosyl transferase 73D1		UDP-glucosyl transferase 73D1;(source:Araport11)
AT3G53240.1	protein_coding	receptor like protein 45		receptor like protein 45;(source:Araport11)
AT3G53160.1	protein_coding	UDP-glucosyl transferase 73C7		UDP-glucosyl transferase 73C7;(source:Araport11)
AT3G53250.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G53260.1	protein_coding	phenylalanine ammonia-lyase 2	Encodes phenylalanine lyase. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).	phenylalanine ammonia-lyase 2;(source:Araport11)
AT3G53080.1	protein_coding	D-galactoside/L-rhamnose binding SUEL lectin protein		D-galactoside/L-rhamnose binding SUEL lectin protein;(source:Araport11)
AT3G53170.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		LOW protein: PPR containing protein;(source:Araport11)
AT3G53090.1	protein_coding	ubiquitin-protein ligase 7	encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.	ubiquitin-protein ligase 7;(source:Araport11)
AT3G53100.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G53180.1	protein_coding	glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases	Encodes a protein that is the product of a fusion gene with a C-terminal GSI like sequence and an N-terminal part sharing homology with nodulins.  It self-assembles into oligomers and its expression is increased in response to flagellin treatment.  The protein co-localizes with microtubules and binds gamma-tubulin.  RNAi lines are affected in root morphogenesis.	nodulin/glutamine synthase-like protein;(source:Araport11)
AT3G53270.1	protein_coding	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein		Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein;(source:Araport11)
AT3G53110.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited by ABA. LOS4 may be involved in temperature sensing. Is enriched in the nuclear envelope and also located in the cytoplasm. LOS4 is involved in export of poly A RNA. The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G53190.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G53280.1	protein_coding	cytochrome p450 71b5	cytochrome P450 monooxygenase The mRNA is cell-to-cell mobile.	cytochrome p450 71b5;(source:Araport11)
AT3G53120.1	protein_coding	Modifier of rudimentary (Mod(r)) protein		Modifier of rudimentary (Mod(r)) protein;(source:Araport11)
AT3G53200.1	protein_coding	myb domain protein 27	Member of the R2R3 factor gene family.	myb domain protein 27;(source:Araport11)
AT3G53290.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 30 pseudogene	missing N-term 80 AA not found between end of 71B5 and start of this sequence probably a pseudogene, from http://drnelson.utmem.edu/biblioD.html	cytochrome P450, family 71, subfamily B, polypeptide 30 pseudogene;(source:Araport11)
AT3G53130.1	protein_coding	Cytochrome P450 superfamily protein	Lutein-deficient 1 (LUT1) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Involved in epsilon ring hydroxylation. Maps at 67.3 cM on chromosome 3.	Cytochrome P450 superfamily protein;(source:Araport11)
AT3G53210.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G53140.1	protein_coding	O-methyltransferase family protein	Nicotinate N-methyltransferase involved in N-methylnicotinate formation.	O-methyltransferase family protein;(source:Araport11)
AT3G53220.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT3G01310.1	protein_coding	Phosphoglycerate mutase-like family protein	Encodes a functional VIP1/PPIP5K-type ATP-grasp kinase that is involved in both InsP6 to InsP7 conversion and InsP7 to InsP8 conversion, producing the InsP8 cofactor of the ASK1-COI1-JAZ-jasmonate co-receptor complex. It is the major isoform in plants, is required for jasmonate-dependent defenses, and plays an important role in plant defenses against necrotrophic fungi and insect herbivores.	Phosphoglycerate mutase-like family protein;(source:Araport11)
AT3G01130.1	protein_coding			ATP synthase E chain;(source:Araport11)
AT3G01210.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	ACD11 binding partner, may be involved in negative regulation of  ROS-mediated defense response.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G01120.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. This enzyme shares the same substrate as threonine synthase (TS) and its absence transcriptionally affects 8 genes in the genome.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT3G01200.1	protein_coding	PPDK regulatory protein 2	Encodes a PPDK regulatory protein that has protein kinase activity but lacks protein phosphatase activity towards PPDK (pyruvate orthophosphate dikinase).	PPDK regulatory protein 2;(source:Araport11)
AT3G01040.1	protein_coding	galacturonosyltransferase 13	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 13;(source:Araport11)
AT3G01190.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT3G01030.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT3G01180.1	protein_coding	starch synthase 2		starch synthase 2;(source:Araport11)
AT3G01220.1	protein_coding	homeobox protein 20	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.  Expressed during seed germination in the micropylar endosperm and in the root cap, and increases ABA sensitivity and seed dormancy when mutated. The mRNA is cell-to-cell mobile.	homeobox protein 20;(source:Araport11)
AT3G01170.1	protein_coding	Ribosomal protein L34e superfamily protein		Ribosomal protein L34e superfamily protein;(source:Araport11)
AT3G01100.1	protein_coding	hypothetical protein 1	unknown protein, has cDNAs and ESTs associated to it	hypothetical protein 1;(source:Araport11)
AT3G01020.1	protein_coding	ISCU-like 2	Encodes a mitochondrial protein similar to E.coli IscU.  In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.	ISCU-like 2;(source:Araport11)
AT3G01160.1	protein_coding			pre-rRNA-processing ESF1-like protein;(source:Araport11)
AT3G01090.1	protein_coding	SNF1 kinase homolog 10	encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase	SNF1 kinase homolog 10;(source:Araport11)
AT3G01010.1	protein_coding	UDP-glucose/GDP-mannose dehydrogenase family protein		UDP-glucose/GDP-mannose dehydrogenase family protein;(source:Araport11)
AT3G01150.1	protein_coding	polypyrimidine tract-binding protein 1	Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	polypyrimidine tract-binding protein 1;(source:Araport11)
AT3G01080.1	protein_coding	WRKY DNA-binding protein 58	member of WRKY Transcription Factor; Group I	WRKY DNA-binding protein 58;(source:Araport11)
AT3G01140.1	protein_coding	myb domain protein 106	Encodes a MIXTA-like MYB gene NOECK (NOK). Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.	myb domain protein 106;(source:Araport11)
AT3G01070.1	protein_coding	early nodulin-like protein 16		early nodulin-like protein 16;(source:Araport11)
AT3G01060.1	protein_coding			lysine-tRNA ligase;(source:Araport11)
AT3G01250.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G01050.1	protein_coding	membrane-anchored ubiquitin-fold protein 1 precursor		membrane-anchored ubiquitin-fold protein 1 precursor;(source:Araport11)
AT3G01240.1	protein_coding			splicing regulatory glutamine/lysine-rich-like protein;(source:Araport11)
AT3G01230.1	protein_coding			splicing regulatory glutamine/lysine-rich-like protein;(source:Araport11)
AT3G33520.1	protein_coding	actin-related protein 6	Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis.  Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).  Incorporation of this variant histone into chromatin mediates the ambient temperature response. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times.  ARP6 also is involved in globally controlling developmental responses to ambient temperature through incorporation of variant histone H2A.Z into chromatin.	actin-related protein 6;(source:Araport11)
AT3G33530.1	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G43360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 6.1e-82 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G43370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05303.1);(source:TAIR10)
AT3G43380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27800.1);(source:TAIR10)
AT3G43400.1	protein_coding	ELMO/CED-12 family protein		ELMO/CED-12 family protein;(source:Araport11)
AT3G43390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1);(source:TAIR10)
AT3G43320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37050.1);(source:TAIR10)
AT3G43410.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT3G43330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30560.1);(source:TAIR10)
AT3G43420.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43340.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT3G43430.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G43350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52960.1);(source:TAIR10)
AT3G25670.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G25700.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G25600.1	protein_coding	Calcium-binding EF-hand family protein	Calmodulin like protein. Paralog of CML15.	Calcium-binding EF-hand family protein;(source:Araport11)
AT3G25610.1	protein_coding	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein	Encodes aminophospholipid ATPase10 (ALA10), a P4-type ATPase flippase that internalizes exogenous phospholipids across the plasma membrane.	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT3G25620.1	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT3G25630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.8e-20 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G25640.1	protein_coding	Protein of unknown function, DUF617		MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT3G25590.1	protein_coding			micronuclear linker histone polyprotein-like protein;(source:Araport11)
AT3G25650.1	protein_coding	SKP1-like 15		SKP1-like 15;(source:Araport11)
AT3G25680.1	protein_coding			SLH domain protein;(source:Araport11)
AT3G25660.1	protein_coding	Amidase family protein		Amidase family protein;(source:Araport11)
AT3G25690.1	protein_coding	Hydroxyproline-rich glycoprotein family protein	actin binding protein required for normal chloroplast positioning The mRNA is cell-to-cell mobile.	Hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G54650.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G54740.1	protein_coding	Protein of unknown function, DUF593		zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT3G54660.1	protein_coding	glutathione reductase	Encodes glutathione reductase that is most likely localized in the chloroplast.	glutathione reductase;(source:Araport11)
AT3G54750.1	protein_coding			downstream neighbor of Son;(source:Araport11)
AT3G54670.1	protein_coding	Structural maintenance of chromosomes (SMC) family protein	Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.	Structural maintenance of chromosomes (SMC) family protein;(source:Araport11)
AT3G54760.1	protein_coding	dentin sialophosphoprotein-related		dentin sialophosphoprotein-like protein;(source:Araport11)
AT3G54680.1	protein_coding	proteophosphoglycan-related		proteophosphoglycan-like protein;(source:Araport11)
AT3G54770.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a putative RNA binding protein that is localized in the nucleus and affects ABA-regulated seed germination of Arabidopsis.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G54690.1	protein_coding	Sugar isomerase (SIS) family protein		Sugar isomerase (SIS) family protein;(source:Araport11)
AT3G54780.1	protein_coding	Zinc finger (C3HC4-type RING finger) family protein		Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT3G54700.1	protein_coding	phosphate transporter 1;7	Encodes Pht1;7, a member of the Pht1 family of phosphate transporters which include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341).	phosphate transporter 1;(source:Araport11)
AT3G54790.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G54710.1	protein_coding	homolog of yeast CDT1 B homolog of yeast CDT1 B	Encodes a cyclin-dependent protein kinase. Involved in nuclear DNA replication and plastid division.	CDT1-like protein B;(source:Araport11)
AT3G54800.1	protein_coding	Pleckstrin homology (PH) and lipid-binding START domains-containing protein		Pleckstrin homology (PH) and lipid-binding START domains-containing protein;(source:Araport11)
AT3G54720.1	protein_coding	Peptidase M28 family protein	Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1.	Peptidase M28 family protein;(source:Araport11)
AT3G54730.1	protein_coding			transcription repressor;(source:Araport11)
AT3G56360.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G56450.1	protein_coding	alpha-soluble NSF attachment protein 1	member of alpha-SNAP Gene Family	alpha-soluble NSF attachment protein 1;(source:Araport11)
AT3G56370.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G56460.1	protein_coding	GroES-like zinc-binding alcohol dehydrogenase family protein		GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT3G56380.1	protein_coding	response regulator 17	response regulator 17	response regulator 17;(source:Araport11)
AT3G56550.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G56470.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G56390.1	protein_coding		TRP is a novel transcription factor. The protein shows similarity to WRKY transcription factors but does not interact with W-box sequences, nor does it appear to activate transcription in one-hybrid assays.TRP binds to and acts antagonistically to ZPF5 in trichome initiation, possibly by blocking ZPF5 binding to its target ZPF8.	WRKY transcription factor-like protein;(source:Araport11)
AT3G56560.1	protein_coding	NAC domain containing protein 65		NAC domain containing protein 65;(source:Araport11)
AT3G56480.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT3G56400.1	protein_coding	WRKY DNA-binding protein 70	Member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of  JA-signaling is partly executed by NPR1.	WRKY DNA-binding protein 70;(source:Araport11)
AT3G56570.1	protein_coding	SET domain-containing protein		SET domain-containing protein;(source:Araport11)
AT3G56490.1	protein_coding	HIS triad family protein 3	Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.	HIS triad family protein 3;(source:Araport11)
AT3G56410.1	protein_coding	Protein of unknown function (DUF3133)		hypothetical protein (DUF3133);(source:Araport11)
AT3G56580.1	protein_coding	RING/U-box superfamily protein	Encodes a functional E3 ubiquitin ligase involved in the dehydration stress response and regulation of proline biosynthesis.	RING/U-box superfamily protein;(source:Araport11)
AT3G56500.1	protein_coding	serine-rich protein-related		serine-rich protein-like protein;(source:Araport11)
AT3G56420.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT3G56510.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G56430.1	protein_coding			import inner membrane translocase subunit;(source:Araport11)
AT3G56600.1	protein_coding	Protein kinase superfamily protein		phosphatidylinositol 4-kinase gamma-like protein;(source:Araport11)
AT3G56520.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein		NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT3G56440.1	protein_coding	homolog of yeast autophagy 18 (ATG18) D		yeast autophagy 18 D-like protein;(source:Araport11)
AT3G56610.1	protein_coding			prolamin-like protein;(source:Araport11)
AT3G56530.1	protein_coding	NAC domain containing protein 64		NAC domain containing protein 64;(source:Araport11)
AT3G56620.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G56540.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G56630.1	protein_coding	cytochrome P450, family 94, subfamily D, polypeptide 2	member of CYP94D	cytochrome P450, family 94, subfamily D, polypeptide 2;(source:Araport11)
AT3G56640.1	protein_coding	exocyst complex component sec15A	Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.	exocyst complex component sec15A;(source:Araport11)
AT3G45680.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G45690.1	protein_coding	Major facilitator superfamily protein	Encodes a member of the NAXT NPF subfamily.	Major facilitator superfamily protein;(source:Araport11)
AT3G45700.1	protein_coding	Major facilitator superfamily protein	NPF2.4 is a member of the NAXT NPF subfamily. It encodes a plasmamembrane localized chloride transporter that is expressed in the root and is down regulated in response to ABA and salt treatment. NPF2.3 miRNA induced knockdowns have less Cl in the shoots when grown on low NaCl concentrations.	Major facilitator superfamily protein;(source:Araport11)
AT3G45710.1	protein_coding	Major facilitator superfamily protein	Encodes a chloride permeable transporter. Modulates chloride efflux from roots.	Major facilitator superfamily protein;(source:Araport11)
AT3G45720.1	protein_coding	Major facilitator superfamily protein	Encodes a member of the NAXT NPF subfamily.	Major facilitator superfamily protein;(source:Araport11)
AT3G45730.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G45740.1	protein_coding	hydrolase family protein / HAD-superfamily protein		hydrolase family protein / HAD-superfamily protein;(source:Araport11)
AT3G45750.1	protein_coding	Nucleotidyltransferase family protein		Nucleotidyltransferase family protein;(source:Araport11)
AT3G45760.1	protein_coding	Nucleotidyltransferase family protein		Nucleotidyltransferase family protein;(source:Araport11)
AT3G46880.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G46800.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G46720.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G46890.1	protein_coding			maternal effect embryo arrest protein;(source:Araport11)
AT3G46810.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G46900.1	protein_coding	copper transporter 2	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	copper transporter 2;(source:Araport11)
AT3G46730.1	protein_coding	NB-ARC domain-containing disease resistance protein		NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT3G46820.1	protein_coding	type one serine/threonine protein phosphatase 5	Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.	type one serine/threonine protein phosphatase 5;(source:Araport11)
AT3G46740.1	protein_coding	translocon at the outer envelope membrane of chloroplasts 75-III	Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts.	translocon at the outer envelope membrane of chloroplasts 75-III;(source:Araport11)
AT3G46910.1	protein_coding	Cullin family protein		Cullin family protein;(source:Araport11)
AT3G46830.1	protein_coding	RAB GTPase homolog A2C		RAB GTPase homolog A2C;(source:Araport11)
AT3G46750.1	protein_coding			low-temperature-induced protein;(source:Araport11)
AT3G46920.1	protein_coding	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain		kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT3G46840.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT3G46760.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G46850.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT3G46770.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G46860.1	protein_coding	Serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family.  Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	Serine protease inhibitor, potato inhibitor I-type family protein;(source:Araport11)
AT3G46870.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G46780.1	protein_coding	plastid transcriptionally active 16		plastid transcriptionally active 16;(source:Araport11)
AT3G46700.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G46790.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-H subfamily) with 9 pentatricopeptide (PPR) repeats. The protein is involved the intergenic processing of chloroplast RNA between rps7 and ndhB, which is essential for ndhB translation.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G46710.1	protein_coding	NB-ARC domain-containing disease resistance protein		NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT3G30260.1	protein_coding	AGAMOUS-like 79	Agamous-like transcription factor. A target of SPL10, AGL79 knockdowns show defects in leaf shape, shoot branching, and flowering time.	AGAMOUS-like 79;(source:Araport11)
AT3G30290.1	protein_coding	cytochrome P450, family 702, subfamily A, polypeptide 8	a member of cytochrome P450 gene family	cytochrome P450, family 702, subfamily A, polypeptide 8;(source:Araport11)
AT3G30340.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G30300.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT3G30350.1	protein_coding		Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor-like protein;(source:Araport11)
AT3G30310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1);(source:TAIR10)
AT3G30360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18420.1);(source:TAIR10)
AT3G30320.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G30370.1	protein_coding			MuDR family transposase;(source:Araport11)
AT3G30330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.7e-83 P-value blast match to At1g36190.1/92-340 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G30380.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G30390.1	protein_coding	Transmembrane amino acid transporter family protein	Encodes a putative amino acid transporter.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT3G30280.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G04200.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT3G04280.1	protein_coding	response regulator 22	Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators.	response regulator 22;(source:Araport11)
AT3G04190.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT3G04270.1	protein_coding			two-component response regulator ARR22-like protein;(source:Araport11)
AT3G04110.1	protein_coding	glutamate receptor 1.1	putative glutamate receptor (GLR1.1). Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.	glutamate receptor 1.1;(source:Araport11)
AT3G04360.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G04260.1	protein_coding	plastid transcriptionally active 3		plastid transcriptionally active 3;(source:Araport11)
AT3G04100.1	protein_coding	AGAMOUS-like 57		AGAMOUS-like 57;(source:Araport11)
AT3G04180.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT3G04250.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G04290.1	protein_coding	Li-tolerant lipase 1		Li-tolerant lipase 1;(source:Araport11)
AT3G04090.1	protein_coding	small and basic intrinsic protein 1A	Belongs to a family of plant aquaporins. Similar to yeast and radish aquaporins. Located on ER.	small and basic intrinsic protein 1A;(source:Araport11)
AT3G04170.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT3G04350.1	protein_coding	Plant protein of unknown function (DUF946)		vacuolar sorting-associated protein (DUF946);(source:Araport11)
AT3G04240.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Has O-linked N-acetyl glucosamine transferase activity. Similar to Arabidopsis SPY gene.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G04160.1	protein_coding			U11/U12 small nuclear ribonucleoprotein;(source:Araport11)
AT3G04230.1	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT3G04080.1	protein_coding	apyrase 1	Encodes an Golgi-localized integral membrane enzyme with nucleoside diphosphate activity that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination.With respect to substrate specificity, APY1 shows the following preferences UTP>IDP>GDP.	apyrase 1;(source:Araport11)
AT3G04150.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT3G04220.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G04340.1	protein_coding	FtsH extracellular protease family	Functions in maintaining the cellular redox balance and regulates photorespiratory metabolism.Strong interaction with TIC inner envelope protein translocon which consists of Tic20/Tic56/Tic100/Tic214(Ycf1)(DOI:10.1105/tpc.18.00357).	FtsH extracellular protease family;(source:Araport11)
AT3G04140.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT3G04210.1	protein_coding	Disease resistance protein (TIR-NBS class)	TN13 is a TIR-NBS protein involved in immune response. It co localizes with the ER and perinuclear membranes and interacts with MOS6.	Disease resistance protein (TIR-NBS class);(source:Araport11)
AT3G04330.1	protein_coding	Kunitz family trypsin and protease inhibitor protein		Kunitz family trypsin and protease inhibitor protein;(source:Araport11)
AT3G04130.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G04320.1	protein_coding	Kunitz family trypsin and protease inhibitor protein		Kunitz family trypsin and protease inhibitor protein;(source:Araport11)
AT3G04120.1	protein_coding	glyceraldehyde-3-phosphate dehydrogenase C subunit 1	encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS. The mRNA is cell-to-cell mobile.	glyceraldehyde-3-phosphate dehydrogenase C subunit 1;(source:Araport11)
AT3G04310.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G04300.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT3G43150.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G32910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03990.1);(source:TAIR10)
AT3G32920.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G32890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.3e-291 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G32880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila);(source:TAIR10)
AT3G32900.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G34900.1);(source:TAIR10)
AT3G10910.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G10820.1	protein_coding	Transcription elongation factor (TFIIS) family protein		Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT3G10740.1	protein_coding	alpha-L-arabinofuranosidase 1	Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases.  It may be involved in cell wall modification.	alpha-L-arabinofuranosidase 1;(source:Araport11)
AT3G10810.1	protein_coding	zinc finger (C3HC4-type RING finger) family protein		zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT3G10730.1	protein_coding	SAD1/UNC-84 domain protein 2	Encodes a member of the Sad1/UNC-84 (SUN)-domain proteins: AtSUN1(At5g04990), AtSUN2(AT3G10730).  SUN domain proteins are part of the cytoskeletal-nucleoskeletal bridging complexes.  AtSUN1 and AtSUN2 are localized to the nuclear envelope and are present as homomers and heteromers in vivo.	SAD1/UNC-84 domain protein 2;(source:Araport11)
AT3G10880.1	protein_coding			tropomyosin;(source:Araport11)
AT3G10800.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	Encodes bZIP28, a putative membrane-tethered transcriptional factor. Up-regulated in response to heat; a bZIP28 null mutant has a heat-sensitive phenotype.  bZIP28 has a similar domain structure to the mammalian ATF6 protein involved in the unfolded protein response (UPR), and shares a bZIP domain, transmembrane domain, and a canonical S1P cleavage site. The bZIP28 seems to be glycosylated in vivo. bZIP28 does not appear to be transcriptionally up-regulated by UPR-inducing tunicamycin (TM) treatment. But, the expression level of three UPR-related genes is reduced in TM-treated zip28 mutants relative to wild type seedlings. And several UPR genes are transcriptionally upregulated when an N-terminal portion of the bZIP28 protein is expressed using the 35S promoter. A myc:bZIP28 fusion protein appears to be cleaved, likely at a canonical S2 cleavage site, following a TM treatment or a DTT stress-inducing treatment, but not a salt treatment. A portion of the  mGFP:bZIP28 protein present in root cells appears to translocate from the cytoplasm and ER to the nucleus following TM treatment. It is cleaved by S2P to allow translocation to the nucleus. The mRNA is cell-to-cell mobile.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT3G10900.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT3G10870.1	protein_coding	methyl esterase 17	Encodes a methyl IAA esterase. Methyl IAA is believed to be an inactive form of auxin that needs to be demethylated to exert a biological effect. MES17 does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. This gene is expressed in several tissues of seedlings and adult plants, with a higher relative level of expression in the seedling shoot apex and the adult stem.	methyl esterase 17;(source:Araport11)
AT3G10790.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G10720.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT3G10860.1	protein_coding	Cytochrome b-c1 complex, subunit 8 protein		Cytochrome b-c1 complex, subunit 8 protein;(source:Araport11)
AT3G10780.1	protein_coding	emp24/gp25L/p24 family/GOLD family protein		emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT3G10710.1	protein_coding	root hair specific 12		root hair specific 12;(source:Araport11)
AT3G10850.1	protein_coding	Metallo-hydrolase/oxidoreductase superfamily protein	glyoxalase II cytoplasmic isozyme (Glx2-2) mRNA, complete	Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT3G10770.1	protein_coding	Single-stranded nucleic acid binding R3H protein		Single-stranded nucleic acid binding R3H protein;(source:Araport11)
AT3G10840.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G10760.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G10750.1	protein_coding	FBD domain family		FBD domain family;(source:Araport11)
AT3G10890.1	protein_coding	Glycosyl hydrolase superfamily protein	Encodes an endo beta mannanase that is localized to the apoplast and involved in glutathione mediated cadmium tolerance.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT3G60560.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G60480.1	protein_coding			StAR lipid transfer-like protein;(source:Araport11)
AT3G60400.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT3G60570.1	protein_coding	expansin B5	member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin B5;(source:Araport11)
AT3G60490.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G60410.1	protein_coding	Protein of unknown function (DUF1639)		hypothetical protein (DUF1639);(source:Araport11)
AT3G60580.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT3G60500.1	protein_coding	3'-5'-exoribonuclease family protein	Encodes a 3'-5' exoribonuclease, positively regulates CER3 transcription, involved in cuticular wax biosynthesis.	3-5-exoribonuclease family protein;(source:Araport11)
AT3G60420.1	protein_coding	Phosphoglycerate mutase family protein		phosphoglycerate mutase family protein;(source:Araport11)
AT3G60510.1	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT3G60520.1	protein_coding			zinc ion-binding protein;(source:Araport11)
AT3G60530.1	protein_coding	GATA transcription factor 4	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 4;(source:Araport11)
AT3G60360.1	protein_coding	embryo sac development arrest 14		embryo sac development arrest 14;(source:Araport11)
AT3G60440.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT3G60370.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein	Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx.  Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined.	FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G60450.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT3G60540.1	protein_coding	Preprotein translocase Sec, Sec61-beta subunit protein		Preprotein translocase Sec, Sec61-beta subunit protein;(source:Araport11)
AT3G60380.1	protein_coding			cotton fiber protein;(source:Araport11)
AT3G60460.1	protein_coding	myb-like HTH transcriptional regulator family protein	Encodes an R2R3 myb transcription factor that is required for male gamete formation, specifically for entry of the generative cell into mitosis.  Specifically expressed in the male germline.	myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT3G60550.1	protein_coding	cyclin p3;2		cyclin p3;(source:Araport11)
AT3G60390.1	protein_coding	homeobox-leucine zipper protein 3	Encodes homeobox protein HAT3.	homeobox-leucine zipper protein 3;(source:Araport11)
AT3G60470.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G66656.1	protein_coding	AGAMOUS-like 91		AGAMOUS-like 91;(source:Araport11)
AT3G66654.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G66658.1	protein_coding	aldehyde dehydrogenase 22A1	Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures.	aldehyde dehydrogenase 22A1;(source:Araport11)
AT3G08510.1	protein_coding	phospholipase C 2	Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol.  It is involved in auxin biosynthesis and signaling, modulating development of both male and female gametophytes. It also regulates MAMP-triggered immunity by modulating ROS production.	phospholipase C 2;(source:Araport11)
AT3G08530.1	protein_coding	Clathrin, heavy chain	CHC2 heavy chain subunit of clathrin. Involved in vesicle mediated trafficking. Mutants show reduced rates of endocytosis and defects clathrin mediated exocytosis Mutants have increased drought tolerance due to defects in stomatal movement.	Clathrin, heavy chain;(source:Araport11)
AT3G08520.1	protein_coding	Ribosomal protein L41 family		Ribosomal protein L41 family;(source:Araport11)
AT3G08490.1	protein_coding			delta-latroinsectotoxin-Lt1a protein;(source:Araport11)
AT3G08500.1	protein_coding	myb domain protein 83	Encodes a putative R2R3-type MYB transcription factor (MYB83).	myb domain protein 83;(source:Araport11)
AT3G57500.1	protein_coding			fission regulator-like protein;(source:Araport11)
AT3G57420.1	protein_coding	Protein of unknown function (DUF288)	Regulates the assembly and trafficking of cellulose synthase complexes.	transmembrane protein, putative (DUF288);(source:Araport11)
AT3G57510.1	protein_coding	Pectin lyase-like superfamily protein	Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding.	Pectin lyase-like superfamily protein;(source:Araport11)
AT3G57430.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a chloroplast RNA editing factor.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G57520.1	protein_coding	seed imbibition 2	SIP2 encodes a raffinose-specific alpha-galactosidase that catalyzes the breakdown of raffinose into alpha-galatose and sucrose. This enzyme may function in unloading raffinose from the phloem as part of sink metabolism. Although it was originally predicted to act as a raffinose synthase (RS), that activity was not observed for recombinant SIP2.	seed imbibition 2;(source:Araport11)
AT3G57440.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G57530.1	protein_coding	calcium-dependent protein kinase 32	Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro	calcium-dependent protein kinase 32;(source:Araport11)
AT3G57450.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G57540.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT3G57460.1	protein_coding	catalytics;metal ion binding		catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding protein;(source:Araport11)
AT3G57550.1	protein_coding	guanylate kinase	guanylate kinase	guanylate kinase;(source:Araport11)
AT3G57470.1	protein_coding	Insulinase (Peptidase family M16) family protein		Insulinase (Peptidase family M16) family protein;(source:Araport11)
AT3G57560.1	protein_coding	N-acetyl-l-glutamate kinase	encodes a N-acetylglutamate kinase, involved in arginine biosynthesis	N-acetyl-l-glutamate kinase;(source:Araport11)
AT3G57480.1	protein_coding	zinc finger (C2H2 type, AN1-like) family protein	SAP1  is a protein of unknown function whose expression is responsive to abiotic stressors including metals, salt, and ABA. Over expression confers increased tolerance to a variety of abiotic stressors.	zinc finger (C2H2 type, AN1-like) family protein;(source:Araport11)
AT3G57490.1	protein_coding	Ribosomal protein S5 family protein		Ribosomal protein S5 family protein;(source:Araport11)
AT3G56680.1	protein_coding	Single-stranded nucleic acid binding R3H protein		Single-stranded nucleic acid binding R3H protein;(source:Araport11)
AT3G56690.1	protein_coding	Cam interacting protein 111	encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined.	Cam interacting protein 111;(source:Araport11)
AT3G56770.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G56780.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT3G56870.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G56700.1	protein_coding	fatty acid reductase 6	Encodes a fatty-acyl-CoA reductase that is expressed in response to wounding.	fatty acid reductase 6;(source:Araport11)
AT3G56710.1	protein_coding	sigma factor binding protein 1	Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.	sigma factor binding protein 1;(source:Araport11)
AT3G56790.1	protein_coding	RNA splicing factor-related		RNA splicing factor-like protein;(source:Araport11)
AT3G56880.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT3G56720.1	protein_coding			pre-mRNA-splicing factor;(source:Araport11)
AT3G56800.1	protein_coding	calmodulin 3	encodes a calmodulin	calmodulin 3;(source:Araport11)
AT3G56890.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G56730.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G56810.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G56900.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes ALADIN, a component of the nuclear pore complex.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G56740.1	protein_coding	Ubiquitin-associated (UBA) protein	ATI3A interacting protein containing a large N-terminal rhomboid-like transmembrane domain and a UBA domain at their C terminus, localized in the ER with an important role in plant heat tolerance. UBAC2 proteins may act as both cargo receptors and inducers of an ATI3-mediated selective autophagy pathway, where ATI3 and UBAC2 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	Ubiquitin-associated (UBA) protein;(source:Araport11)
AT3G56820.1	protein_coding			RmlC-type cupin;(source:Araport11)
AT3G56910.1	protein_coding	plastid-specific 50S ribosomal protein 5	Encodes PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5). Functions in plastid translation.	plastid-specific 50S ribosomal protein 5;(source:Araport11)
AT3G56750.1	protein_coding			plant/protein;(source:Araport11)
AT3G56830.1	protein_coding	Protein of unknown function (DUF565)	Similar in sequence to NPQ6 and NPQ7, but loss of function mutant does not exhibit a nonphotochemical quenching phenotype.	YCF20-like protein (DUF565);(source:Araport11)
AT3G56920.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT3G56760.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G56840.1	protein_coding	FAD-dependent oxidoreductase family protein		FAD-dependent oxidoreductase family protein;(source:Araport11)
AT3G56850.1	protein_coding	ABA-responsive element binding protein 3	Encodes an ABA-responsive element binding protein with a bZIP domain. Located in the nucleus and expressed in the embryo during seed  maturation.	ABA-responsive element binding protein 3;(source:Araport11)
AT3G56860.1	protein_coding	UBP1-associated protein 2A	encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.	UBP1-associated protein 2A;(source:Araport11)
AT3G32310.1	pseudogene			pseudogene of chromatin remodeling 34;(source:Araport11)
AT3G32340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT3G32320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, blastp match of 43%25 identity and 9.6e-170 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G32370.1	pseudogene			pseudogene of chromatin remodeling 34;(source:Araport11)
AT3G32030.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein	Terpene synthase. Expressed in roots and has low enzyme activity in vitro. Products include dolabellane type diterpenes.	Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G48680.1	protein_coding	gamma carbonic anhydrase-like 2	Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex. The mRNA is cell-to-cell mobile.	gamma carbonic anhydrase-like 2;(source:Araport11)
AT3G48690.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a protein with carboxylesterase whose activity was tested using both pNA and 2,4-D-methyl.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G48510.1	protein_coding		ABA&#8208;induced transcription repressor that acts as feedback regulator in ABA signalling.	AtIII18x5-like protein;(source:Araport11)
AT3G48520.1	protein_coding	cytochrome P450, family 94, subfamily B, polypeptide 3	CYP94B3 is a jasmonoyl-isoleucine-12-hydroxylase that catalyzes the formation of 12-OH-JA-Ile from JA-Ile. By reducing the levels of this the biologically active phytohormone, CYP94B3 attenuates the jasmonic acid signaling cascade. CYP94B3 transcript levels rise in response to wounding.	cytochrome P450, family 94, subfamily B, polypeptide 3;(source:Araport11)
AT3G48600.1	protein_coding	SWIB complex BAF60b domain-containing protein		SWIB complex BAF60b domain-containing protein;(source:Araport11)
AT3G48610.1	protein_coding	non-specific phospholipase C6		non-specific phospholipase C6;(source:Araport11)
AT3G48530.1	protein_coding	SNF1-related protein kinase regulatory subunit gamma 1		SNF1-related protein kinase regulatory subunit gamma 1;(source:Araport11)
AT3G48700.1	protein_coding	carboxyesterase 13		carboxyesterase 13;(source:Araport11)
AT3G48620.1	protein_coding	Outer membrane OMP85 family protein		Outer membrane OMP85 family protein;(source:Araport11)
AT3G48540.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT3G48710.1	protein_coding	DEK domain-containing chromatin associated protein		DEK domain-containing chromatin associated protein;(source:Araport11)
AT3G48630.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G48550.1	protein_coding			SHOOT GRAVITROPISM-like protein;(source:Araport11)
AT3G48720.1	protein_coding	HXXXD-type acyl-transferase family protein	Encodes a hydroxycinnamoyl-CoA: v-hydroxy fatty acid transferase involved in cutin synthesis.  Mutants are almost devoid of ferulic acid.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G48640.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G48730.1	protein_coding	glutamate-1-semialdehyde 2,1-aminomutase 2		glutamate-1-semialdehyde 2,1-aminomutase 2;(source:Araport11)
AT3G48560.1	protein_coding	chlorsulfuron/imidazolinone resistant 1	Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr.  The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.	chlorsulfuron/imidazolinone resistant 1;(source:Araport11)
AT3G48570.1	protein_coding	secE/sec61-gamma protein transport protein		secE/sec61-gamma protein transport protein;(source:Araport11)
AT3G48650.1	pseudogene			pseudogene of pectinesterase;(source:Araport11)
AT3G48580.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 11		xyloglucan endotransglucosylase/hydrolase 11;(source:Araport11)
AT3G48660.1	protein_coding	Protein of unknown function (DUF 3339)		transmembrane protein, putative (DUF 3339);(source:Araport11)
AT3G48590.1	protein_coding	nuclear factor Y, subunit C1	Encodes a protein with similarity to a subunit of  the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5A) and expressed in vegetative and reproductive tissues.	nuclear factor Y, subunit C1;(source:Araport11)
AT3G48670.1	protein_coding	XH/XS domain-containing protein	Encodes IDN2 (INVOLVED IN DE NOVO 2), a double-stranded RNA-binding protein involved in de novo methylation and small interfering RNA (siRNA)-mediated maintenance methylation. IND2 is a component of the RNA-directed DNA methylation pathway.	XH/XS domain-containing protein;(source:Araport11)
AT3G49580.1	protein_coding	response to low sulfur 1		response to low sulfur 1;(source:Araport11)
AT3G49590.1	protein_coding	Autophagy-related protein 13		Autophagy-related protein 13;(source:Araport11)
AT3G49410.1	protein_coding	Transcription factor IIIC, subunit 5		Transcription factor IIIC, subunit 5;(source:Araport11)
AT3G49500.1	protein_coding	RNA-dependent RNA polymerase 6	Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance.Loss of function mutants produce ectopic megaspore mother cell and supernumary female gametophytes.	RNA-dependent RNA polymerase 6;(source:Araport11)
AT3G49420.1	protein_coding	Got1/Sft2-like vescicle transport protein family		Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT3G49430.1	protein_coding	SER/ARG-rich protein 34A	Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SER/ARG-rich protein 34A;(source:Araport11)
AT3G49510.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G49600.1	protein_coding	ubiquitin-specific protease 26	Encodes a ubiquitin-specific protease which catalyzes deubiquitination of   histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1.	ubiquitin-specific protease 26;(source:Araport11)
AT3G49440.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G49520.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G49610.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein (DUF313);(source:Araport11)
AT3G49450.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G49530.1	protein_coding	NAC domain containing protein 62	Transcription factor that serves as a molecular link between cold signals and pathogen resistance  responses.  Undergoes proteolytic processing triggered by cold-induced changes in membrane fluidity.It relocates from the plasma membrane to the nucleus in response to ER stress. NAC062 is phosphorylated by SnRK2.8 at Thr-142.	NAC domain containing protein 62;(source:Araport11)
AT3G49620.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G49460.1	protein_coding			60S acidic ribosomal-like protein;(source:Araport11)
AT3G49540.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G49630.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G49470.1	protein_coding	nascent polypeptide-associated complex subunit alpha-like protein 2		nascent polypeptide-associated complex subunit alpha-like protein 2;(source:Araport11)
AT3G49550.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G49640.1	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G49480.1	protein_coding	Protein with RNI-like/FBD-like domains		F-box/FBD/LRR protein;(source:Araport11)
AT3G49560.1	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	HP30/Tric1 is a component of the mitochondrial protein translocation complex and is involved in tRNA transport along with HP30-2/Tric2.	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT3G49650.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G49490.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G49570.1	protein_coding	response to low sulfur 3		response to low sulfur 3;(source:Araport11)
AT3G05040.1	protein_coding	ARM repeat superfamily protein	Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species.	ARM repeat superfamily protein;(source:Araport11)
AT3G04870.1	protein_coding	zeta-carotene desaturase	Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.	zeta-carotene desaturase;(source:Araport11)
AT3G04950.1	protein_coding			SEC-C motif protein;(source:Araport11)
AT3G04860.1	protein_coding	Plant protein of unknown function (DUF868)		hypothetical protein (DUF868);(source:Araport11)
AT3G04940.1	protein_coding	cysteine synthase D1	Encodes cysteine synthase CysD1.	cysteine synthase D1;(source:Araport11)
AT3G05030.1	protein_coding	sodium hydrogen exchanger 2	Encodes a vacuolar K+/H+ exchanger essential for active K+ uptake at the tonoplast and involved in regulating stomatal closure.	sodium hydrogen exchanger 2;(source:Araport11)
AT3G04930.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT3G05020.1	protein_coding	acyl carrier protein 1	encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Protein is not regulated by light.	acyl carrier protein 1;(source:Araport11)
AT3G04850.1	protein_coding	Tesmin/TSO1-like CXC domain-containing protein		Tesmin/TSO1-like CXC domain-containing protein;(source:Araport11)
AT3G04920.1	protein_coding	Ribosomal protein S24e family protein		Ribosomal protein S24e family protein;(source:Araport11)
AT3G05010.1	protein_coding	Protein of unknown function, transmembrane-40	Encodes a candidate G-protein Coupled Receptor that is involved in the regulation of root growth by bacterial N-acyl-homoserine lactones (AHLs) and plays a role in mediating interactions between plants and microbes.	Protein of unknown function, transmembrane-40;(source:Araport11)
AT3G04840.1	protein_coding	Ribosomal protein S3Ae		Ribosomal protein S3Ae;(source:Araport11)
AT3G04910.1	protein_coding	with no lysine (K) kinase 1	Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm.	with no lysine (K) kinase 1;(source:Araport11)
AT3G05000.1	protein_coding	Transport protein particle (TRAPP) component	Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	Transport protein particle (TRAPP) component;(source:Araport11)
AT3G04830.1	protein_coding	Protein prenylyltransferase superfamily protein		Protein prenylyltransferase superfamily protein;(source:Araport11)
AT3G04900.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G04990.1	protein_coding			intracellular protein transporter;(source:Araport11)
AT3G04820.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT3G04890.1	protein_coding	Uncharacterized conserved protein (DUF2358)		adenine phosphoribosyltransferase-like protein, putative (DUF2358);(source:Araport11)
AT3G04980.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT3G04810.1	protein_coding	NIMA-related kinase 2	Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 2;(source:Araport11)
AT3G04880.1	protein_coding	DNA-damage-repair/toleration protein (DRT102)	encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).	DNA-damage-repair/toleration protein (DRT102);(source:Araport11)
AT3G04970.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT3G04960.1	protein_coding	Domain of unknown function (DUF3444)		trichohyalin, putative (DUF3444);(source:Araport11)
AT4G37110.1	protein_coding	Zinc-finger domain of monoamine-oxidase A repressor R1		Zinc-finger domain of monoamine-oxidase A repressor R1;(source:Araport11)
AT4G37030.1	protein_coding			membrane protein;(source:Araport11)
AT4G36910.1	protein_coding	Cystathionine beta-synthase (CBS) family protein	Encodes a single cystathionine beta-synthase domain-containing protein. Modulates development by regulating the thioredoxin system.	Cystathionine beta-synthase (CBS) family protein;(source:Araport11)
AT4G37230.1	protein_coding	Photosystem II manganese-stabilising protein (PsbO) family		Photosystem II manganese-stabilising protein (PsbO) family;(source:Araport11)
AT4G37280.1	protein_coding	MRG family protein		MRG family protein;(source:Araport11)
AT4G37150.1	protein_coding	methyl esterase 9	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	methyl esterase 9;(source:Araport11)
AT4G36950.1	protein_coding	mitogen-activated protein kinase kinase kinase 21	member of MEKK subfamily	mitogen-activated protein kinase kinase kinase 21;(source:Araport11)
AT4G37070.1	protein_coding	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein	Patatin-related phospholipase A. Expressed strongly  and exclusively in roots. AtplaIVA-null mutants have reduced lateral root development. Phosphorylation by calcium-dependent protein kinases in vitro  enhances its activity.	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein;(source:Araport11)
AT4G36870.1	protein_coding	BEL1-like homeodomain 2	Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw2 may act redundantly to repress BP in leaves.	BEL1-like homeodomain 2;(source:Araport11)
AT4G36900.1	protein_coding	related to AP2 10	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.10). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.1.	related to AP2 10;(source:Araport11)
AT4G37220.1	protein_coding	Cold acclimation protein WCOR413 family		Cold acclimation protein WCOR413 family;(source:Araport11)
AT4G36990.1	protein_coding	heat shock factor 4	Encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins.	heat shock factor 4;(source:Araport11)
AT4G37270.1	protein_coding	heavy metal atpase 1	Encodes a P1B-type ATPases that is localized to the chloroplast envelope and is involved in the transport of Cu into chloroplasts.  It is essential for growth under high light conditions.	heavy metal atpase 1;(source:Araport11)
AT4G37140.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a protein with similarity to SABP2, a methyl salicylate esterase from tobacco. However, this protein is truncated and lacks two of the residues of the predicted catalytic triad, suggesting that it does not have this enzymatic activity.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G37010.1	protein_coding	centrin 2	Encodes a member of the Centrin family. Mutants are hypersensitive to UV and prone to UV induced DNA damage. Based on sequence similarity and mutant phenotype CEN2 is thought to be involved in nucelotide excision repair/DNA repair.	centrin 2;(source:Araport11)
AT4G37190.1	protein_coding			plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein;(source:Araport11)
AT4G37060.1	protein_coding	PATATIN-like protein 5	Patatin-related phospholipase A. Expressed weakly in roots, cotyledons, and leaves but is transcriptionally induced  by auxin. Phosphorylation by calcium-dependent protein kinases in vitro  enhances its activity.	PATATIN-like protein 5;(source:Araport11)
AT4G37210.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G37130.1	protein_coding	hydroxyproline-rich glycoprotein family protein	Encodes a member of the Nup62 subcomplex of the Arabidopsis NPC.	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G37260.1	protein_coding	myb domain protein 73	Member of the R2R3 factor gene family. The mRNA is cell-to-cell mobile.	myb domain protein 73;(source:Araport11)
AT4G37050.1	protein_coding	PATATIN-like protein 4	Patatin-related phospholipase A. Expressed in the floral gynaecium and is induced by  abscisic acid (ABA) or phosphate deficiency in roots.	PATATIN-like protein 4;(source:Araport11)
AT4G37180.1	protein_coding	Homeodomain-like superfamily protein	UIF1 is a nuclear and cytoplasmically localized myb-domain containing member of the GARP G2-like subfamily of transcription factors. Interacts with ULT1 and binds to the WUS promoter. UIF1 binding domains are also found in CUC and AG promoters suggesting they are also direct targets.  This locus was also identified as a putative cytoskeletal protein in a yeast screen.	Homeodomain-like superfamily protein;(source:Araport11)
AT4G36930.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G36970.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT4G36890.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	IRX14 was identified as MUCI64 in a reverse genetic screen for MUCILAGE-RELATED genes. IRX14/MUCI64 is a GT43 protein essential for xylan elongation in seed coat mucilage. The xylan backbone maintains the attachment of mucilage to the seed surface and the distribution of cellulose. It was identified based on its gene expression co-variance with the IRX3 gene involved in secondary cell wall synthesis.  A biochemical assay using the irx14 mutant indicates that IRX14 might function in xylose chain elongation.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT4G36940.1	protein_coding	nicotinate phosphoribosyltransferase 1		nicotinate phosphoribosyltransferase 1;(source:Araport11)
AT4G36980.1	protein_coding			CLK4-associating serine/arginine-rich protein;(source:Araport11)
AT4G37000.1	protein_coding	accelerated cell death 2 (ACD2)	Mutants have spontaneous spreading cell death lesions and constitutive activation of defenses in the absence of pathogen infection.  Its product was shown to display  red chlorophyll catabolite reductase (RCCR), which catalyzes one step in the breakdown of the porphyrin component of chlorophyll. The enzyme was further assessed to be a Type-1 (pFCC-1-producing) RCCR.Upon P. syringae infection, ACD2 localization shifts from being largely in chloroplasts to partitioning to chloroplasts, mitochondria, and to a small extent, cytosol. Overexpression of ACD2 delayed cell death and the replication of P. syringae.	accelerated cell death 2 (ACD2);(source:Araport11)
AT4G37200.1	protein_coding	Thioredoxin superfamily protein	Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex.  Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen.	Thioredoxin superfamily protein;(source:Araport11)
AT4G37120.1	protein_coding	Pre-mRNA splicing Prp18-interacting factor	Encodes a zinc finger containing protein similar to step II splicing factors that is similar to SMP1. SMP2 is also reduced in SMP1 epigenetic alleles; plants make smaller organs having reduced cell numbers but increased cell size. The mRNA is cell-to-cell mobile.	Pre-mRNA splicing Prp18-interacting factor;(source:Araport11)
AT4G37250.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G37040.1	protein_coding	methionine aminopeptidase 1D	encodes a methionine aminopeptidase	methionine aminopeptidase 1D;(source:Araport11)
AT4G37170.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G37090.1	protein_coding			UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase;(source:Araport11)
AT4G37240.1	protein_coding			HTH-type transcriptional regulator;(source:Araport11)
AT4G36920.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G37160.1	protein_coding	SKU5  similar 15		SKU5 similar 15;(source:Araport11)
AT4G37080.1	protein_coding	Protein of unknown function, DUF547		ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT4G36960.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G36880.1	protein_coding	cysteine proteinase1		cysteine proteinase1;(source:Araport11)
AT4G37100.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT4G37020.1	protein_coding			initiation factor 4A-like protein;(source:Araport11)
AT4G36620.1	protein_coding	GATA transcription factor 19	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 19;(source:Araport11)
AT4G36540.1	protein_coding	BR enhanced expression 2	Encodes the brassinosteroid signaling component BEE2 (BR-ENHANCED EXPRESSION 2). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	BR enhanced expression 2;(source:Araport11)
AT4G36820.1	protein_coding	Protein of unknown function (DUF607)	Mitochondrial calcium channel.	calcium uniporter (DUF607);(source:Araport11)
AT4G36460.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G36740.1	protein_coding	homeobox protein 40	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	homeobox protein 40;(source:Araport11)
AT4G36380.1	protein_coding	Cytochrome P450 superfamily protein	Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).	Cytochrome P450 superfamily protein;(source:Araport11)
AT4G36660.1	protein_coding	Protein of unknown function (DUF1195)		polyol transporter, putative (DUF1195);(source:Araport11)
AT4G36400.1	protein_coding	FAD-linked oxidases family protein	Encodes a (D)-2-hydroxyglutarate dehydrogenase.	FAD-linked oxidases family protein;(source:Araport11)
AT4G36600.1	protein_coding	Late embryogenesis abundant (LEA) protein		Late embryogenesis abundant (LEA) protein;(source:Araport11)
AT4G36520.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G36730.1	protein_coding	G-box binding factor 1	member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box	G-box binding factor 1;(source:Araport11)
AT4G36650.1	protein_coding	plant-specific TFIIB-related protein	Encodes a protein with similarity to the general transcription factor TFIIB. pBRP binds rDNA sequences in vitro. pBRP has been localized to the outer face of the plastid membrane with GFP fusion however, under conditions of proteosome inhibition it is found in the nucleus.	plant-specific TFIIB-related protein;(source:Araport11)
AT4G36570.1	protein_coding	RAD-like 3		RAD-like 3;(source:Araport11)
AT4G36490.1	protein_coding	SEC14-like 12		SEC14-like 12;(source:Araport11)
AT4G36850.1	protein_coding	PQ-loop repeat family protein / transmembrane family protein		PQ-loop repeat family protein / transmembrane family protein;(source:Araport11)
AT4G36770.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G36690.1	protein_coding	U2 snRNP auxilliary factor, large subunit, splicing factor	Regulates flowering time and displays a redundant role in pollen tube growth together with AtU2AF65b.	U2 snRNP auxilliary factor, large subunit, splicing factor;(source:Araport11)
AT4G36580.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT4G36860.1	protein_coding	LIM domain-containing protein	DAR1 is a member of a small (7 member) ubiquitin binding protein family. It appears to play a role in regulation of endoreduplication in leaf epidermal tissue.	LIM domain-containing protein;(source:Araport11)
AT4G36780.1	protein_coding	BES1/BZR1 homolog 2		BES1/BZR1 homolog 2;(source:Araport11)
AT4G36440.1	protein_coding			G-protein coupled receptor;(source:Araport11)
AT4G36800.1	protein_coding	RUB1 conjugating enzyme 1	RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.	RUB1 conjugating enzyme 1;(source:Araport11)
AT4G36720.1	protein_coding	HVA22-like protein K		HVA22-like protein K;(source:Araport11)
AT4G36640.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT4G36560.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G36510.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G36430.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT4G36710.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT4G36480.1	protein_coding	long-chain base1	Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion.	long-chain base1;(source:Araport11)
AT4G36630.1	protein_coding	Vacuolar sorting protein 39		Vacuolar sorting protein 39;(source:Araport11)
AT4G36840.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G36550.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G36760.1	protein_coding	aminopeptidase P1	Arabidopsis aminopeptidase P1 The mRNA is cell-to-cell mobile.	aminopeptidase P1;(source:Araport11)
AT4G36680.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Ribosomal pentatricopeptide repeat protein	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G36500.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G36420.1	protein_coding	Ribosomal protein L12 family protein		Ribosomal protein L12 family protein;(source:Araport11)
AT4G36700.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT4G36830.1	protein_coding	GNS1/SUR4 membrane protein family	ELO family protein.	GNS1/SUR4 membrane protein family;(source:Araport11)
AT4G36470.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G36750.1	protein_coding	Quinone reductase family protein		Quinone reductase family protein;(source:Araport11)
AT4G36390.1	protein_coding	Methylthiotransferase		Methylthiotransferase;(source:Araport11)
AT4G36670.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT4G36590.1	protein_coding	MADS-box transcription factor family protein		MADS-box transcription factor family protein;(source:Araport11)
AT4G36410.1	protein_coding	ubiquitin-conjugating enzyme 17	ubiquitin-conjugating enzyme	ubiquitin-conjugating enzyme 17;(source:Araport11)
AT4G36790.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT4G36610.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G36530.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G36450.1	protein_coding	mitogen-activated protein kinase 14	member of MAP Kinase	mitogen-activated protein kinase 14;(source:Araport11)
AT4G36810.1	protein_coding	geranylgeranyl pyrophosphate synthase 1	Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. The mRNA is cell-to-cell mobile.	geranylgeranyl pyrophosphate synthase 1;(source:Araport11)
AT4G05320.1	protein_coding	polyubiquitin 10	One of five polyubiquitin genes in A. thaliana.  These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. The mRNA is cell-to-cell mobile.	polyubiquitin 10;(source:Araport11)
AT4G05090.1	protein_coding	Inositol monophosphatase family protein		Inositol monophosphatase family protein;(source:Araport11)
AT4G05100.1	protein_coding	myb domain protein 74	Member of the R2R3 factor gene family.	myb domain protein 74;(source:Araport11)
AT4G05110.1	protein_coding	equilibrative nucleoside transporter 6		equilibrative nucleoside transporter 6;(source:Araport11)
AT4G08430.1	protein_coding	Ulp1 protease family protein		Ulp1 protease family protein;(source:Araport11)
AT4G08450.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G05330.1	protein_coding	ARF-GAP domain 13	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	ARF-GAP domain 13;(source:Araport11)
AT4G05420.1	protein_coding	damaged DNA binding protein 1A	Structurally similar to damaged DNA binding proteins. DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis. DDB1a is shown to be RUB-modified.	damaged DNA binding protein 1A;(source:Araport11)
AT4G05340.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G05430.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT4G05350.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G05440.1	protein_coding	temperature sensing protein-related	Plays a role in pollen development and modulating DNA replication via interaction with MCM4 and MCM7 of the pre-replication complex.	temperature sensing protein-like protein;(source:Araport11)
AT4G05360.1	protein_coding	Zinc knuckle (CCHC-type) family protein		Zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT4G05450.1	protein_coding	mitochondrial ferredoxin 1		mitochondrial ferredoxin 1;(source:Araport11)
AT4G05460.1	protein_coding	RNI-like superfamily protein	Encodes a SKP1/ASK-Interacting protein.	RNI-like superfamily protein;(source:Araport11)
AT4G05380.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop nucleoside triphosphate hydrolase superfamily protein;(source:Araport11)
AT4G05390.1	protein_coding	root FNR 1	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	root FNR 1;(source:Araport11)
AT4G05400.1	protein_coding	copper ion binding		copper ion binding protein;(source:Araport11)
AT4G05490.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G05410.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a nucleolar protein with seven   WD40-repeats that plays a role in embryo sac development and is critical for the correct positioning of the division plane of zygote and the apical cell lineage in Arabidopsis.  YAO may act by modulating nucleolar function, such as rRNA biogenesis, during early embryogenesis and gametogenesis.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G07660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.9e-240 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07670.1	protein_coding	protease-associated (PA) domain-containing protein		protease-associated (PA) domain-containing protein;(source:Araport11)
AT4G07680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease famiy, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT4G07690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30500.1);(source:TAIR10)
AT4G07620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.1e-216 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.9e-13 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains Pfam profile PF03078: ATHILA ORF-1 family;(source:TAIR10)
AT4G07720.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT4G07640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-250 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.8e-198 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G34240.1	protein_coding	aldehyde dehydrogenase 3I1	Encodes an aldehyde dehydrogenase induced by ABA and dehydration that can oxidize saturated aliphatic aldehydes. It is also able to oxidize beta-unsaturated aldehydes, but not aromatic aldehydes. ALDH3I1 was able to use both NAD+ and NADP+ as cofactors.	aldehyde dehydrogenase 3I1;(source:Araport11)
AT4G34330.1	protein_coding	Protein of unknown function (DUF677)		transmembrane protein, putative (DUF677);(source:Araport11)
AT4G34250.1	protein_coding	3-ketoacyl-CoA synthase 16	Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 16;(source:Araport11)
AT4G34340.1	protein_coding	TBP-associated factor 8		TBP-associated factor 8;(source:Araport11)
AT4G34260.1	protein_coding	1,2-alpha-L-fucosidases		1,2-alpha-L-fucosidase;(source:Araport11)
AT4G34430.1	protein_coding	DNA-binding family protein	Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002).	DNA-binding family protein;(source:Araport11)
AT4G34350.1	protein_coding	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	Arabidopsis ISPH is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. It was shown to complement the lethal phenotype of E. coli ispH mutant and is therefore most likely encodes a protein with 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity involved in the last step of mevalonate-independent isopentenyl biosynthesis. Mutant has Albino seedling.	4-hydroxy-3-methylbut-2-enyl diphosphate reductase;(source:Araport11)
AT4G34270.1	protein_coding	TIP41-like family protein	TOR signaling pathway protein.	TIP41-like family protein;(source:Araport11)
AT4G34360.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G34280.1	protein_coding	transducin family protein / WD-40 repeat family protein	Encodes a putative substrate receptor for the cullin4-RING ubiquitin E3 ligase complex that is involved in negative regulation of plant UV-B response.	transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G34370.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G34290.1	protein_coding	SWIB/MDM2 domain superfamily protein		SWIB/MDM2 domain superfamily protein;(source:Araport11)
AT4G34380.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G34300.1	protein_coding	Cupredoxin superfamily protein	Encodes protein with 14.7% glycine residues, similar to auxin response factor 30 (GI:20145855) {Arabidopsis thaliana}	Cupredoxin superfamily protein;(source:Araport11)
AT4G34390.1	protein_coding	extra-large GTP-binding protein 2		extra-large GTP-binding protein 2;(source:Araport11)
AT4G34310.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G34320.1	protein_coding	Protein of unknown function (DUF677)		transmembrane protein, putative (DUF677);(source:Araport11)
AT4G34400.1	protein_coding	AP2/B3-like transcriptional factor family protein	B3-type transcription factor, which promotes floral transition and is repressed by FLC/SVP and promoted by SOC1.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT4G34410.1	protein_coding	redox responsive transcription factor 1	Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. Regulates programmed cell death (PCD) inhibitor genes. Involved in retarding programmed cell death under salt stress due to the regulation of processes participating in ROS inhibition. ERF-regulated transcripts belong to the tryptophan biosynthesis, tryptophan metabolism, and downstream plant hormone signal transduction pathways, where ERF109 potentially acts as a ?master switch? mediator of a cascade of consecutive events across the three pathways, promoting plant growth and re-adjustment to homeostasis due the direct participation in auxin biosynthesis leading to the plant?s ability to tolerate salt stress.	redox responsive transcription factor 1;(source:Araport11)
AT4G34420.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G26760.1	protein_coding	microtubule-associated protein 65-2		microtubule-associated protein 65-2;(source:Araport11)
AT4G26770.1	protein_coding	Phosphatidate cytidylyltransferase family protein		Phosphatidate cytidylyltransferase family protein;(source:Araport11)
AT4G26780.1	protein_coding	Co-chaperone GrpE family protein	unknown function	Co-chaperone GrpE family protein;(source:Araport11)
AT4G26790.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT4G26960.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G26800.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G26970.1	protein_coding	aconitase 2	Encodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate, indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. One member of the family (ACO1 - At35830) was shown to specifically bind to the 5' UTR of CSD2 in vitro. The mRNA is cell-to-cell mobile.	aconitase 2;(source:Araport11)
AT4G26810.1	protein_coding	SWIB/MDM2 domain superfamily protein		SWIB/MDM2 domain superfamily protein;(source:Araport11)
AT4G26980.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G26820.1	protein_coding			GrpE-like protein;(source:Araport11)
AT4G26990.1	protein_coding			polyadenylate-binding protein interacting protein;(source:Araport11)
AT4G27000.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G26830.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT4G26840.1	protein_coding	small ubiquitin-like modifier 1	Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.	small ubiquitin-like modifier 1;(source:Araport11)
AT4G27010.1	protein_coding			ribosome 60S biogenesis amino-terminal protein;(source:Araport11)
AT4G26850.1	protein_coding	mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase	Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.	GDP-L-galactose phosphorylase 1;(source:Araport11)
AT4G27020.1	protein_coding			inositol-1,4,5-trisphosphate 5-phosphatase;(source:Araport11)
AT4G27030.1	protein_coding	fatty acid desaturase A	Encodes an unusual palmitate desaturase that is highly substrate specific. It introduces a delta-3 trans double bond at palmitate at the sn-2 position of phosphatidylglycerol. The mRNA is cell-to-cell mobile.	fatty acid desaturase A;(source:Araport11)
AT4G27040.1	protein_coding	EAP30/Vps36 family protein		EAP30/Vps36 family protein;(source:Araport11)
AT4G27050.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G26700.1	protein_coding	fimbrin 1	Encodes a member of the fimbrin family. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	fimbrin 1;(source:Araport11)
AT4G26860.1	protein_coding	Predicted pyridoxal phosphate-dependent enzyme, YBL036C type		Putative pyridoxal phosphate-dependent enzyme, YBL036C type;(source:Araport11)
AT4G26710.1	protein_coding	ATPase, V0 complex, subunit E		ATPase, V0 complex, subunit E;(source:Araport11)
AT4G26870.1	protein_coding	Class II aminoacyl-tRNA and biotin synthetases superfamily protein		Class II aminoacyl-tRNA and biotin synthetases superfamily protein;(source:Araport11)
AT4G26720.1	protein_coding	protein phosphatase X 1	Encodes catalytic subunit of protein phosphatase X. Expressed at very low levels in A. thaliana flowers, leaves, stems and roots.	protein phosphatase X 1;(source:Araport11)
AT4G26880.1	protein_coding	Stigma-specific Stig1 family protein		Stigma-specific Stig1 family protein;(source:Araport11)
AT4G26730.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G26890.1	protein_coding	mitogen-activated protein kinase kinase kinase 16	member of MEKK subfamily	mitogen-activated protein kinase kinase kinase 16;(source:Araport11)
AT4G26900.1	protein_coding	HIS HF	encodes a glutamine amidotransferase and cyclase, catalyzes the fifth and sixth steps of the histidine biosynthetic pathway	HIS HF;(source:Araport11)
AT4G26740.1	protein_coding	seed gene 1	Encodes caleosin, a 27-kDa protein found within seed lipid bodies. Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27. Catalyze hydroperoxide-dependent mono-oxygenation  reactions. Require calcium for peroxygenase activity. Probably  deeply buried in lipid droplets or microsomes.	peroxygenase 1;(source:Araport11)
AT4G26910.1	protein_coding	Dihydrolipoamide succinyltransferase		Dihydrolipoamide succinyltransferase;(source:Araport11)
AT4G26750.1	protein_coding	hydroxyproline-rich glycoprotein family protein	Encodes a protein involved in mediating plant responses to pathogenesis. Loss of function mutations have increased susceptibility to bacterial pathogens and are defective in pathogen induced endocytosis and vesicle trafficking. LIP5 physically interacts with SKD1 and that interaction is required for its resistance phenotype. LIP5 is phosphorylated by MPK3 and MPK6, both of which are components of the disease resistance pathway.	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G26920.1	protein_coding	START (StAR-related lipid-transfer) lipid-binding domain		START (StAR-related lipid-transfer) lipid-binding domain-containing protein;(source:Araport11)
AT4G26930.1	protein_coding	myb domain protein 97	Encodes a putative transcription factor (MYB97).	myb domain protein 97;(source:Araport11)
AT4G26940.1	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT4G26950.1	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT4G32260.1	protein_coding	ATPase, F0 complex, subunit B/B', bacterial/chloroplast		ATPase, F0 complex, subunit B/B, bacterial/chloroplast;(source:Araport11)
AT4G32180.1	protein_coding	pantothenate kinase 2	Encodes a protein with pantothenate kinase activity.	pantothenate kinase 2;(source:Araport11)
AT4G32270.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT4G32190.1	protein_coding	Myosin heavy chain-related protein	Encodes a plastid-located coiled coil-containing protein that is required for normal starch granule initiation in Arabidopsis chloroplasts. Mutants lacking MRC have fewer starch granules per chloroplast than the wild type. Interacts with PTST2 (At1g27070), which is also required for normal starch granule initiation (DOI:10.1105/tpc.18.00219).	Myosin heavy chain-related protein;(source:Araport11)
AT4G32280.1	protein_coding	indole-3-acetic acid inducible 29		indole-3-acetic acid inducible 29;(source:Araport11)
AT4G32200.1	protein_coding	DNA-binding HORMA family protein	meiotic asynaptic mutant 2, homologue of ASY1	DNA-binding HORMA family protein;(source:Araport11)
AT4G32290.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G32210.1	protein_coding	succinate dehydrogenase 3-2	Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-1.	succinate dehydrogenase 3-2;(source:Araport11)
AT4G32220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.8e-57 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G32230.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G32240.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G32250.1	protein_coding	Protein kinase superfamily protein	Encodes a component of the TOC machinery that phosphorylates import receptors, supports pre-protein import, and contributes to efficient chloroplast biogenesis.	Protein kinase superfamily protein;(source:Araport11)
AT4G32020.1	protein_coding			serine/arginine repetitive matrix-like protein;(source:Araport11)
AT4G32110.1	protein_coding	Beta-1,3-N-Acetylglucosaminyltransferase family protein		Beta-1,3-N-Acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G32030.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G32120.1	protein_coding	Galactosyltransferase family protein	Encodes a hydroxyproline O-galactosyltransferase.	Galactosyltransferase family protein;(source:Araport11)
AT4G32040.1	protein_coding	KNOTTED1-like homeobox gene 5	A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis.  KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone.	homeobox protein knotted-1-like 5;(source:Araport11)
AT4G32130.1	protein_coding	Protein of unknown function (DUF2012)		ER membrane protein complex subunit-like protein (DUF2012);(source:Araport11)
AT4G32050.1	protein_coding	neurochondrin family protein		neurochondrin family protein;(source:Araport11)
AT4G32140.1	protein_coding	EamA-like transporter family		EamA-like transporter family;(source:Araport11)
AT4G32060.1	protein_coding	calcium-binding EF hand family protein	Encodes an EF-hand protein with homology to constituents of the mitochondrial Ca2+ uniporter machinery in mammals. MICU binds Ca2+ and localizes to the mitochondria in Arabidopsis.  It is a negative regulator of mitochondrial calcium uptake. Mutants display elevated matrix calcium at steady state and modified calcium transient kinetics in vivo.	calcium-binding EF hand family protein;(source:Araport11)
AT4G32150.1	protein_coding	vesicle-associated membrane protein 711	AtVAMP711 is a member of Synaptobrevin-like AtVAMP7C, v-SNARE (soluble N-ethyl-maleimide sensitive factor attachment protein receptors) protein family. SNAREs have been divided into four subgroups: Qa-, Qb-, Qc- and R-SNAREs. R-SNAREs are classified into three groups, the Sec22-, YKT6- and VAMP7-like R-SNAREs. One R-SNARE and three Q-SNAREs (one of each subgroup) form the trans-SNARE complex, which governs specific membrane fusions.  VAMP7 proteins consist of three distinct domain, the N-terminal longin-domain (LD), the SNARE motif (SNM) and a transmembrane domain. In spite of the high similarities among the VAMP7 proteins, they show different subcellular localizations. VAMP7C is vacuolar-localized and its LD is essential for the correct localization. Generally, it is suggested that the complete LD is the determinant of subcellular sorting in both animal and plant R-SNAREs.	vesicle-associated membrane protein 711;(source:Araport11)
AT4G32070.1	protein_coding	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT4G32160.1	protein_coding	Phox (PX) domain-containing protein		Phox (PX) domain-containing protein;(source:Araport11)
AT4G32080.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G32090.1	protein_coding	Beta-1,3-N-Acetylglucosaminyltransferase family protein		Beta-1,3-N-Acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G32100.1	protein_coding	Beta-1,3-N-Acetylglucosaminyltransferase family protein		Beta-1,3-N-Acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G31900.1	protein_coding	chromatin remodeling factor, putative		chromatin remodeling factor;(source:Araport11)
AT4G31820.1	protein_coding	Phototropic-responsive NPH3 family protein	A member of the NPY family genes (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590).  Encodes a protein with similarity to NHP3. Contains BTB/POZ domain. Promoter region has  canonical auxin response element binding site and Wus binding site. Co-localizes to the late endosome with PID. Regulates cotyledon development through control of PIN1 polarity in concert with PID. Also involved in sepal and gynoecia development.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT4G31910.1	protein_coding	HXXXD-type acyl-transferase family protein	Encodes an acyltransferase that can modify brassinosteroids (BRs) by acylation and may modulate endogenous BR levels.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT4G31830.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G31840.1	protein_coding	early nodulin-like protein 15		early nodulin-like protein 15;(source:Araport11)
AT4G31850.1	protein_coding	proton gradient regulation 3	encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs. Functions in the stabilization of petL operon RNA and also in the translation of petL.	proton gradient regulation 3;(source:Araport11)
AT4G31860.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT4G31870.1	protein_coding	glutathione peroxidase 7	Encodes glutathione peroxidase. Role in the degradation of H2O2 to water using glutathione as electron donor.	glutathione peroxidase 7;(source:Araport11)
AT4G31880.1	protein_coding		One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	transcriptional regulator;(source:Araport11)
AT4G31890.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G31810.1	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT4G34930.1	protein_coding	PLC-like phosphodiesterases superfamily protein		PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT4G34850.1	protein_coding	Chalcone and stilbene synthase family protein		Chalcone and stilbene synthase family protein;(source:Araport11)
AT4G34940.1	protein_coding	armadillo repeat only 1	Armadillo repeat protein. One of a family of four in Arabidopsis. Located in the nucleus and cytoplasm of pollen vegetative cells, and in the cytoplasm of egg cells. Involved in the signaling network controlling tip growth and actin organization in the pollen tube.	armadillo repeat only 1;(source:Araport11)
AT4G34950.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT4G34770.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G34780.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G34860.1	protein_coding	Plant neutral invertase family protein		Plant neutral invertase family protein;(source:Araport11)
AT4G34790.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G34870.1	protein_coding	rotamase cyclophilin 5	belongs to cyclophilin family	rotamase cyclophilin 5;(source:Araport11)
AT4G34800.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G34880.1	protein_coding	Amidase family protein		Amidase family protein;(source:Araport11)
AT4G34810.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G34890.1	protein_coding	xanthine dehydrogenase 1	Encodes a xanthine dehydrogenase, involved in purine catabolism. Ubiquitously expressed, but the transcript level is altered during aging, senescence, salt and cold stress, ABA treatment, and dark  treatment. RNAi lines that suppress both XDH1 and XDH2 produce small plants with reduced fertility and  accelerated leaf senescence. Role in drought tolerance.	xanthine dehydrogenase 1;(source:Araport11)
AT4G34900.1	protein_coding	xanthine dehydrogenase  2		xanthine dehydrogenase 2;(source:Araport11)
AT4G34830.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes MRL1, a conserved pentatricopeptide repeat protein, required for stabilization of rbcL mRNA.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G34910.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G34840.1	protein_coding	Phosphorylase superfamily protein	Encodes one of the 5'-methylthioadenosine nucleosidases (AT4G38800/MTN1; AT4G34840/MTN2). Double mutant, mtn1-1mtn2-1, retains approximately 14% of the MTN enzyme activity present in the wild type and displays a pleiotropic phenotype that includes altered vasculature and impaired fertility.	Phosphorylase superfamily protein;(source:Araport11)
AT4G34920.1	protein_coding	PLC-like phosphodiesterases superfamily protein		PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT4G01450.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G01540.1	protein_coding	NAC with transmembrane motif1	Encodes a membrane-bound NAC (for NAM, ATAF1/2, CUC2) transcription factor, designated NTM1 (for NAC with transmembrane motif1).  NTM1 regulates cell division in Arabidopsis.	NAC with transmembrane motif1;(source:Araport11)
AT4G01460.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G01550.1	protein_coding	NAC domain containing protein 69	Encodes a plasma-membrane bound NAC transcription factor, whose controlled proteolytic activation allows it to enter the nucleus.	NAC domain containing protein 69;(source:Araport11)
AT4G01470.1	protein_coding	tonoplast intrinsic protein 1;3	Encodes AtTIP1;3, functions as water and urea channels in pollen.	tonoplast intrinsic protein 1;(source:Araport11)
AT4G01560.1	protein_coding	Ribosomal RNA processing Brix domain protein		Ribosomal RNA processing Brix domain protein;(source:Araport11)
AT4G01480.1	protein_coding	pyrophosphorylase 5	Encodes a protein that might have inorganic pyrophosphatase activity.	pyrophosphorylase 5;(source:Araport11)
AT4G01490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.4e-44 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT4G01500.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT4G01510.1	protein_coding	Arv1-like protein		Arv1-like protein;(source:Araport11)
AT4G01520.1	protein_coding	NAC domain containing protein 67		NAC domain containing protein 67;(source:Araport11)
AT4G01530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26860.1);(source:TAIR10)
AT4G18830.1	protein_coding	ovate family protein 5	Member of the ovate protein family.Interacts with BLH1 and KNAT3. Regulates the subcellular localization of BLH1.	ovate family protein 5;(source:Araport11)
AT4G18840.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT4G18920.1	protein_coding	Protein of unknown function (DUF1264)		histone acetyltransferase (DUF1264);(source:Araport11)
AT4G18930.1	protein_coding	RNA ligase/cyclic nucleotide phosphodiesterase family protein		RNA ligase/cyclic nucleotide phosphodiesterase family protein;(source:Araport11)
AT4G19020.1	protein_coding	chromomethylase 2	Encodes a plant DNA methyltransferase that methylates mainly cytosines in CHH (H = any base but G) contexts.  It is involved in heat tolerance.	chromomethylase 2;(source:Araport11)
AT4G18860.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G18940.1	protein_coding	RNA ligase/cyclic nucleotide phosphodiesterase family protein		RNA ligase/cyclic nucleotide phosphodiesterase family protein;(source:Araport11)
AT4G19030.1	protein_coding	NOD26-like major intrinsic protein 1	an aquaporin whose expression level is reduced by ABA, NaCl, dark, and desiccation. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.	NOD26-like major intrinsic protein 1;(source:Araport11)
AT4G18870.1	protein_coding	E2F/DP family winged-helix DNA-binding domain		E2F/DP family winged-helix DNA-binding domain-containing protein;(source:Araport11)
AT4G18950.1	protein_coding	Integrin-linked protein kinase family	BHP1 is a Raf-like protein kinase involved in mediating blue light dependent stomatal opening.	Integrin-linked protein kinase family;(source:Araport11)
AT4G19040.1	protein_coding	ENHANCED DISEASE RESISTANCE 2	Encodes a PH and START domain-containing protein that mediates resistance to pathogenic fungi. Resistance requires salicylic acid signalling. Mutants are resistant to E. cichoracearum. Expressed throughout plant tissues and possibly localized to membranes /mitochondrion.	ENHANCED DISEASE RESISTANCE 2;(source:Araport11)
AT4G18880.1	protein_coding	heat shock transcription factor  A4A	Encodes a member of Heat Stress Transcription Factor(Hsf) family that is a substrate of the MPK3/MPK6 signaling and regulates stress responses.	heat shock transcription factor A4A;(source:Araport11)
AT4G18960.1	protein_coding	K-box region and MADS-box transcription factor family protein 	Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT4G18890.1	protein_coding	BES1/BZR1 homolog 3		BES1/BZR1 homolog 3;(source:Araport11)
AT4G18970.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT4G18900.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G18980.1	protein_coding	AtS40-3	Encodes a nuclear-targeted protein AtS40-3 that modulates senescence associated gene expression.	AtS40-3;(source:Araport11)
AT4G18910.1	protein_coding	NOD26-like intrinsic protein 1;2	Encodes an aquaporin homolog. Functions in arsenite transport and tolerance.When expressed in yeast cells can conduct hydrogen peroxide into those cells.	NOD26-like intrinsic protein 1;(source:Araport11)
AT4G18990.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 29		xyloglucan endotransglucosylase/hydrolase 29;(source:Araport11)
AT4G19000.1	protein_coding	Transcription elongation factor (TFIIS) family protein	The C-terminal portion of this protein has homology to the C-termini of the IWS1 (Interacts With Spt6) proteins found in yeast and humans.	Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT4G19010.1	protein_coding	AMP-dependent synthetase and ligase family protein	Encodes for a 4-coumarate-CoA ligase involved in the biosynthesis of the benzenoid ring of ubiquinone from phenylalanine.	AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT4G25010.1	protein_coding	Nodulin MtN3 family protein	Encodes a member of the SWEET sucrose efflux transporter family proteins. Together with SWEET13, it is likely involved in modulating the GA response and is required  for  proper development of anthers, seeds and seedlings.	Nodulin MtN3 family protein;(source:Araport11)
AT4G25020.1	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT4G25030.1	protein_coding		Plastid localized protein of unknown function. Mutants are more susceptible to P. syringae and produce less callose upon infection.	Serine/Threonine-kinase;(source:Araport11)
AT4G24990.1	protein_coding	Ubiquitin family protein	geranylgeranylated protein ATGP4	Ubiquitin family protein;(source:Araport11)
AT4G25000.1	protein_coding	alpha-amylase-like	Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization.  Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).	alpha-amylase-like protein;(source:Araport11)
AT4G07310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05860.1);(source:TAIR10)
AT4G07320.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT4G07330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.6e-13 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G25820.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 14	Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer. The mRNA is cell-to-cell mobile.	xyloglucan endotransglucosylase/hydrolase 14;(source:Araport11)
AT4G25830.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G25750.1	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT4G25840.1	protein_coding	glycerol-3-phosphatase 1		glycerol-3-phosphatase 1;(source:Araport11)
AT4G25760.1	protein_coding	glutamine dumper 2	Encodes a member of the GDU (glutamine dumper) family proteins involved in amino acid export: At4g31730 (GDU1), At4g25760 (GDU2), At5g57685 (GDU3), At2g24762 (GDU4), At5g24920 (GDU5), At3g30725 (GDU6) and At5g38770 (GDU7).	glutamine dumper 2;(source:Araport11)
AT4G25850.1	protein_coding	OSBP(oxysterol binding protein)-related protein 4B		OSBP(oxysterol binding protein)-related protein 4B;(source:Araport11)
AT4G25770.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G25860.1	protein_coding	OSBP(oxysterol binding protein)-related protein 4A		OSBP(oxysterol binding protein)-related protein 4A;(source:Araport11)
AT4G25780.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT4G25870.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G25790.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT4G25880.1	protein_coding	pumilio 6	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 6;(source:Araport11)
AT4G25800.1	protein_coding	Calmodulin-binding protein		Calmodulin-binding protein;(source:Araport11)
AT4G25890.1	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT4G25810.1	protein_coding	xyloglucan endotransglycosylase 6	xyloglucan endotransglycosylase-related protein (XTR6)	xyloglucan endotransglycosylase 6;(source:Araport11)
AT4G25900.1	protein_coding	Galactose mutarotase-like superfamily protein		Galactose mutarotase-like superfamily protein;(source:Araport11)
AT4G35440.1	protein_coding	chloride channel E	Enclodes a choride channel protein that is localized to the thlakoid membrane.	chloride channel E;(source:Araport11)
AT4G35450.1	protein_coding	ankyrin repeat-containing protein 2	Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.	ankyrin repeat-containing protein 2;(source:Araport11)
AT4G35460.1	protein_coding	NADPH-dependent thioredoxin reductase B	NADPH-dependent thioredoxin reductase 1 (NTR1. Similar to E.coli NTR and has conserved NADPH binding domains.	NADPH-dependent thioredoxin reductase B;(source:Araport11)
AT4G35470.1	protein_coding	plant intracellular ras group-related LRR 4	Encodes PIRL4, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.	plant intracellular ras group-related LRR 4;(source:Araport11)
AT4G35480.1	protein_coding	RING-H2 finger A3B	Encodes a putative RING-H2 finger protein RHA3b.	RING-H2 finger A3B;(source:Araport11)
AT4G35490.1	protein_coding	mitochondrial ribosomal protein L11		mitochondrial ribosomal protein L11;(source:Araport11)
AT4G18040.1	protein_coding	eukaryotic translation initiation factor 4E	eIF4E protein.  The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein.	eukaryotic translation initiation factor 4E;(source:Araport11)
AT4G18130.1	protein_coding	phytochrome E	member of Histidine Kinase	phytochrome E;(source:Araport11)
AT4G18050.1	protein_coding	P-glycoprotein  9		P-glycoprotein 9;(source:Araport11)
AT4G18140.1	protein_coding	SCP1-like small phosphatase 4b	Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).	SCP1-like small phosphatase 4b;(source:Araport11)
AT4G18060.1	protein_coding	SH3 domain-containing protein		SH3 domain-containing protein;(source:Araport11)
AT4G18150.1	protein_coding	Kinase-related protein of unknown function (DUF1296)		Serine/Threonine-kinase, putative (DUF1296);(source:Araport11)
AT4G18070.1	protein_coding			suppressor;(source:Araport11)
AT4G18160.1	protein_coding	Ca2+ activated outward rectifying K+ channel 6	Encodes AtTPK3 (KCO6), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK3 is found in the thylakoid stromal lamellae. May form homomeric ion channels in vivo.  It modulates the partitioning of the proton motive force (pmf) between the delta psi and delta pH in chloroplasts in vivo at physiological light intensities.	Ca2+ activated outward rectifying K+ channel 6;(source:Araport11)
AT4G18080.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G18090.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G18100.1	protein_coding	Ribosomal protein L32e		Ribosomal protein L32e;(source:Araport11)
AT4G18110.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G18120.1	pseudogene	MEI2-like 3	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML3 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML3 is the transcript with highest frequency of alternative splicing. Expression was detected during early embryo development (heart and torpedo stage); no accumulation was detected in vegetative and floral apices, as revealed by in situ hybridization.	MEI2-like 3;(source:Araport11)
AT4G00750.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G00740.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a Golgi-localized type II membrane pectin methyltransferase regulating cell wall biosynthesis in suspension cells.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G28700.1	protein_coding	ammonium transporter 1;4		ammonium transporter 1;(source:Araport11)
AT4G28780.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT4G28710.1	protein_coding	Myosin family protein with Dil domain	member of Myosin-like proteins The mRNA is cell-to-cell mobile.	Myosin family protein with Dil domain-containing protein;(source:Araport11)
AT4G28790.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G28720.1	protein_coding	Flavin-binding monooxygenase family protein	Auxin biosynthetic gene regulated by RVE1. Overexpression leads to suppression of bri1 phenotype.	Flavin-binding monooxygenase family protein;(source:Araport11)
AT4G28800.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G28730.1	protein_coding	Glutaredoxin family protein	Encodes a glutaredoxin GrxC5. GrxC5 exists as two forms when expressed in Escherichia coli. The monomeric apoprotein possesses deglutathionylation activity mediating the recycling of plastidial methionine sulfoxide reductase B1 and peroxiredoxin IIE, whereas the dimeric holoprotein incorporates a [2Fe-2S] cluster.	Glutaredoxin family protein;(source:Araport11)
AT4G28740.1	protein_coding			LOW PSII ACCUMULATION-like protein;(source:Araport11)
AT4G28820.1	protein_coding	HIT-type Zinc finger family protein		HIT-type Zinc finger family protein;(source:Araport11)
AT4G28830.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G28750.1	protein_coding	Photosystem I reaction centre subunit IV / PsaE protein	mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem I	Photosystem I reaction centre subunit IV / PsaE protein;(source:Araport11)
AT4G28760.1	protein_coding	Protein of unknown function (DUF3741)		methyl-coenzyme M reductase II subunit gamma, putative (DUF3741);(source:Araport11)
AT4G28840.1	protein_coding		Encodes TCP INTERACTOR-CONTAINING EAR MOTIF PROTEIN 1 (TIE1), an important repressor of CINCINNATA (CIN)-like TEOSINTE BRANCHED1/CYCLOIDEA/PCF (TCP) transcription factors, which are key for leaf development.	mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT4G28770.1	protein_coding	Tetraspanin family protein		Tetraspanin family protein;(source:Araport11)
AT4G28850.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 26		xyloglucan endotransglucosylase/hydrolase 26;(source:Araport11)
AT4G28860.1	protein_coding	casein kinase I-like 4	Member of CKL gene family (CKL-A group)	casein kinase I-like 4;(source:Araport11)
AT4G23350.1	protein_coding	Protein of Unknown Function (DUF239)		transmembrane protein, putative (DUF239);(source:Araport11)
AT4G23360.1	protein_coding			carboxyl-terminal peptidase;(source:Araport11)
AT4G23440.1	protein_coding	Disease resistance protein (TIR-NBS class)		Disease resistance protein (TIR-NBS class);(source:Araport11)
AT4G23370.1	protein_coding			carboxyl-terminal peptidase;(source:Araport11)
AT4G23450.1	protein_coding	RING/U-box superfamily protein	AtAIRP1 gene encodes a C3H2C3-type RING E3 Ub ligase. It has been shown to be a positive regulator in the Arabidopsis ABA-dependent drought response.	RING/U-box superfamily protein;(source:Araport11)
AT4G23540.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G23380.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT4G23460.1	protein_coding	Adaptin family protein		Adaptin family protein;(source:Araport11)
AT4G23390.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT4G23470.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT4G23400.1	protein_coding	plasma membrane intrinsic protein 1;5		plasma membrane intrinsic protein 1;(source:Araport11)
AT4G23490.1	protein_coding	Protein of unknown function (DUF604)		fringe-like protein (DUF604);(source:Araport11)
AT4G23410.1	protein_coding	tetraspanin5	TET5 encodes a member of the TETRASPANIN gene family that is expressed in the embryo and vascular system and is involved in organ growth redundantly with TET6.	tetraspanin5;(source:Araport11)
AT4G23420.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G23500.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G23430.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G23510.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G23520.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT4G23530.1	protein_coding	Protein of unknown function (DUF793)		ROH1, putative (DUF793);(source:Araport11)
AT4G12030.1	protein_coding	bile acid transporter 5	Required for the biosynthesis of methionine-derived glucosinolates. Involved in the  transport of 2-keto acids between chloroplasts and the cytosol.	bile acid transporter 5;(source:Araport11)
AT4G11960.1	protein_coding	PGR5-like B	Encodes PGRL1B, a transmembrane protein present in thylakoids.  PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).	PGR5-like B;(source:Araport11)
AT4G12040.1	protein_coding	A20/AN1-like zinc finger family protein		A20/AN1-like zinc finger family protein;(source:Araport11)
AT4G12130.1	protein_coding	Glycine cleavage T-protein family	Encodes a mitochondrial COG0354 protein that requires folate for its function in Fe/S cluster biogenesis.	Glycine cleavage T-protein family;(source:Araport11)
AT4G11970.1	protein_coding	YTH family protein		YTH family protein;(source:Araport11)
AT4G12050.1	protein_coding	Predicted AT-hook DNA-binding family protein		Putative AT-hook DNA-binding family protein;(source:Araport11)
AT4G11980.1	protein_coding	nudix hydrolase homolog 14		nudix hydrolase homolog 14;(source:Araport11)
AT4G12060.1	protein_coding	Double Clp-N motif protein		Double Clp-N motif protein;(source:Araport11)
AT4G11990.1	protein_coding	Cell cycle regulated microtubule associated protein		Cell cycle regulated microtubule associated protein;(source:Araport11)
AT4G12070.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G12080.1	protein_coding	AT-hook motif nuclear-localized protein 1		AT-hook motif nuclear-localized protein 1;(source:Araport11)
AT4G12000.1	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT4G12090.1	protein_coding	Cornichon family protein		Cornichon family protein;(source:Araport11)
AT4G12010.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	Leucine-rich repeat domain (NLR) receptor. Dominant negative alleles suppress catma3 autoimmunity.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G12100.1	protein_coding	Cullin family protein		Cullin family protein;(source:Araport11)
AT4G12020.1	protein_coding	protein kinase family protein	Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301.	protein kinase family protein;(source:Araport11)
AT4G12110.1	protein_coding	sterol-4alpha-methyl oxidase 1-1	Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase. Works together with SMO1-2 to maintain correct sterol composition and balance auxin and cytokinin activities during embryogenesis.	sterol-4alpha-methyl oxidase 1-1;(source:Araport11)
AT4G12120.1	protein_coding	Sec1/munc18-like (SM) proteins superfamily	member of KEULE Gene Family	Sec1/munc18-like (SM) proteins superfamily;(source:Araport11)
AT4G29190.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT4G29280.1	protein_coding	low-molecular-weight cysteine-rich 22	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 22;(source:Araport11)
AT4G29200.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT4G29290.1	protein_coding	low-molecular-weight cysteine-rich 26	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 26;(source:Araport11)
AT4G29210.1	protein_coding	gamma-glutamyl transpeptidase 4	The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the vacuole and is most active in roots. The encoded enzyme is involved in the initial degradation of glutathione conjugates in this cell compartment. It is also induced by xenobiotics and contributes to xenobiotics metabolism.  Note that conflicting nomenclature exists in the literature: At4g29210 is named as GGT3 in Plant J. 2007 Mar 49(5):878-88;  At4g29210 is named as GGT4 and At1g69820 as GGT3 in Plant Physiol. 2007 Aug 144(4):1715-32.	gamma-glutamyl transpeptidase 4;(source:Araport11)
AT4G29380.1	protein_coding	protein kinase family protein / WD-40 repeat family protein	The gene encodes phosphatidylinositol 3-  kinase involved in the development and germination of pollen through the biosynthesis of phosphatidylinositol 3-phosphate (PI3P). The mRNA is cell-to-cell mobile.	protein kinase family protein / WD-40 repeat family protein;(source:Araport11)
AT4G29300.1	protein_coding	low-molecular-weight cysteine-rich 27	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 27;(source:Araport11)
AT4G29390.1	protein_coding	Ribosomal protein S30 family protein		Ribosomal protein S30 family protein;(source:Araport11)
AT4G29220.1	protein_coding	phosphofructokinase 1		phosphofructokinase 1;(source:Araport11)
AT4G29480.1	protein_coding	Mitochondrial ATP synthase subunit G protein		Mitochondrial ATP synthase subunit G protein;(source:Araport11)
AT4G29310.1	protein_coding	Protein of unknown function (DUF1005)		DUF1005 family protein (DUF1005);(source:Araport11)
AT4G29230.1	protein_coding	NAC domain containing protein 75		NAC domain containing protein 75;(source:Araport11)
AT4G29400.1	protein_coding	Protein of unknown function (DUF3531)		oxidoreductase/transition metal ion-binding protein (DUF3531);(source:Araport11)
AT4G29240.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G29490.1	protein_coding	Metallopeptidase M24 family protein		Metallopeptidase M24 family protein;(source:Araport11)
AT4G29410.1	protein_coding	Ribosomal L28e protein family		Ribosomal L28e protein family;(source:Araport11)
AT4G29330.1	protein_coding	DERLIN-1		DERLIN-1;(source:Araport11)
AT4G29250.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT4G29420.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G29340.1	protein_coding	profilin 4	Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining.	profilin 4;(source:Araport11)
AT4G29260.1	protein_coding	HAD superfamily, subfamily IIIB acid phosphatase 	VSP3 is a secreted acid phosphatase.	HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT4G29430.1	protein_coding	ribosomal protein S15A E		ribosomal protein S15A E;(source:Araport11)
AT4G29350.1	protein_coding	profilin 2	Encodes profilin2, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Expressed in vegetative organs. The first intron of PRF2 enhances gene expression. The mRNA is cell-to-cell mobile.	profilin 2;(source:Araport11)
AT4G29270.1	protein_coding	HAD superfamily, subfamily IIIB acid phosphatase 		HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT4G29440.1	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT4G29360.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT4G29450.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G29370.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G29460.1	protein_coding	Phospholipase A2 family protein	Encodes one of the four Arabidopsis phospholipase PLA2 parologs: AT2G06925 (PLA2-ALPHA), AT2G19690 (PLA2-BETA), AT4G29460 (PLA2-GAMMA) and AT4G29470 (PLA2-DELTA). Involved in pollen development and germination and tube growth.	Phospholipase A2 family protein;(source:Araport11)
AT4G29470.1	protein_coding	Phospholipase A2 family protein	Encodes one of the four Arabidopsis phospholipase PLA2 parologs: AT2G06925 (PLA2-ALPHA), AT2G19690 (PLA2-BETA), AT4G29460 (PLA2-GAMMA) and AT4G29470 (PLA2-DELTA). Involved in pollen development and germination and tube growth.	Phospholipase A2 family protein;(source:Araport11)
AT4G09840.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G09750.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G09760.1	protein_coding	Protein kinase superfamily protein	encodes a choline synthase whose gene expression is induced by high salt and mannitol.	Protein kinase superfamily protein;(source:Araport11)
AT4G09850.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G09770.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT4G09860.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G09700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06820.1);(source:TAIR10)
AT4G09780.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT4G09870.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G09710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.7e-40 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT4G09790.1	pseudogene		pseudogene of the F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G09720.1	protein_coding	RAB GTPase homolog G3A		RAB GTPase homolog G3A;(source:Araport11)
AT4G09800.1	protein_coding	S18 ribosomal protein	encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex	S18 ribosomal protein;(source:Araport11)
AT4G09730.1	protein_coding	RH39	Encodes RH39, a DEAD-box protein involved in the introduction of the hidden break into the 23S rRNA in the chloroplasts. Recombinant RH39 binds to the 23S rRNA in a segment adjacent to the stem-loop creating the hidden break target loop in a sequence-dependent manner. Has ATP-hydrolyzing activity at a Kcat of 5.3 /min in the presence of rRNA sequence. Mutants have drastically reduced level of level of ribulose 1,5-bisphosphate carboxylase/oxygenase. The mRNA is cell-to-cell mobile.	RH39;(source:Araport11)
AT4G09810.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT4G09740.1	protein_coding	glycosyl hydrolase 9B14		glycosyl hydrolase 9B14;(source:Araport11)
AT4G09820.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis.  Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development. It binds the promoter of both AT3G26790 and AT1G28300.TT8 interacts with JAZ  proteins to regulate anthocyanin accumulation. TT8 acts maternally to affect seed FA biosynthesis and inhibits seed FA accumulation by down-regulating a group of genes either critical to embryonic development or important in the FA biosynthesis pathway. TT8 represses the activities of LEAFY COTYLEDON1, LEAFY COTYLEDON2, and FUSCA3, the critical transcriptional factors important for seed development.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G09830.1	protein_coding	Uncharacterised conserved protein UCP009193		nuclear receptor family 2 group C protein;(source:Araport11)
AT4G30370.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G30380.1	protein_coding	Barwin-related endoglucanase	Encodes a Plant Natriuretic Peptide (PNP). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive.	Barwin-related endoglucanase;(source:Araport11)
AT4G30390.1	protein_coding			UDP-arabinopyranose mutase;(source:Araport11)
AT4G30400.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G30570.1	protein_coding	Glucose-1-phosphate adenylyltransferase family protein		Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT4G30410.1	protein_coding	sequence-specific DNA binding transcription factors		sequence-specific DNA binding transcription factor;(source:Araport11)
AT4G30580.1	protein_coding	Phospholipid/glycerol acyltransferase family protein	Encodes a plastidic lysophosphatidic acid acyltransferase (LPAAT). Is critical for chloroplasts phosphatidic acid biosynthesis. The null allele is embryo lethal.	Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT4G30420.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G30590.1	protein_coding	early nodulin-like protein 12		early nodulin-like protein 12;(source:Araport11)
AT4G30430.1	protein_coding	tetraspanin9	Member of TETRASPANIN family	tetraspanin9;(source:Araport11)
AT4G30600.1	protein_coding	signal recognition particle receptor alpha subunit family protein		signal recognition particle receptor alpha subunit family protein;(source:Araport11)
AT4G30610.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1.  It is proteolytically processed in vivo by a separate as yet unidentified protease.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G30440.1	protein_coding	UDP-D-glucuronate 4-epimerase 1	Encodes a UDP-D-glucuronate 4-epimerase involved in pectin biosynthesis in the cell wall and affects cell wall integrity and immunity to fungi and bacteria.	UDP-D-glucuronate 4-epimerase 1;(source:Araport11)
AT4G30450.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G30620.1	protein_coding	Uncharacterised BCR, YbaB family COG0718	Homolog of STIC2, recent duplication.	Putative BCR, YbaB family COG0718;(source:Araport11)
AT4G30460.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G30630.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G30640.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G30650.1	protein_coding	Low temperature and salt responsive protein family		Low temperature and salt responsive protein family;(source:Araport11)
AT4G30280.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 18	Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC   2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.	xyloglucan endotransglucosylase/hydrolase 18;(source:Araport11)
AT4G30290.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 19	Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC   2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. Involved in cell proliferation in incised inflorescence stems.	xyloglucan endotransglucosylase/hydrolase 19;(source:Araport11)
AT4G30300.1	protein_coding	non-intrinsic ABC protein 15	member of NAP subfamily	non-intrinsic ABC protein 15;(source:Araport11)
AT4G30310.1	protein_coding	FGGY family of carbohydrate kinase		FGGY family of carbohydrate kinase;(source:Araport11)
AT4G30470.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G30320.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT4G30480.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808).  Interacts with Hsp90/Hsp70 as co-chaperone.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G30330.1	protein_coding	Small nuclear ribonucleoprotein family protein	Differs from PCP only in two amino acids, expression is regulated in a manner opposite to that of PCP in that it was upregulated in response to increasing ambient temperature.	Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT4G30490.1	protein_coding	AFG1-like ATPase family protein		AFG1-like ATPase family protein;(source:Araport11)
AT4G30340.1	protein_coding	diacylglycerol kinase 7	encodes a diacylglycerol kinase. Applying  a specific diacylglycerol kinase inhibitor to the growth media resulted in reduced root elongation and plant growth. Gene is expressed throughout the plant but is strongest in flowers and young seedlings.	diacylglycerol kinase 7;(source:Araport11)
AT4G30500.1	protein_coding	Protein of unknown function (DUF788)		transmembrane protein (DUF788);(source:Araport11)
AT4G30510.1	protein_coding	homolog of yeast autophagy 18 (ATG18) B		yeast autophagy 18 B-like protein;(source:Araport11)
AT4G30350.1	protein_coding	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein	Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance. Regulates root and root hair development downstream of KAI2-mediated signaling.	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G30520.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes SARK (SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE). Regulates leaf senescence through synergistic actions of auxin and ethylene. It is one of a group of LRR-RLKs, designated as CLAVATA3 INSENSITIVE RECEPTOR KINASES (CIKs), that act as co-receptors and have essential roles in regulating CLV3-mediated stem cell homeostasis.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G30360.1	protein_coding	cyclic nucleotide-gated channel 17	member of Cyclic nucleotide gated channel family	cyclic nucleotide-gated channel 17;(source:Araport11)
AT4G30530.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes a gamma-glutamyl peptidase, outside the GGT family, that can hydrolyze gamma-glutamyl peptide bonds. The mRNA is cell-to-cell mobile.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT4G30540.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein		Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT4G30550.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein		Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT4G30560.1	protein_coding	cyclic nucleotide gated channel 9	member of Cyclic nucleotide gated channel family	cyclic nucleotide gated channel 9;(source:Araport11)
AT4G33820.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT4G33830.1	protein_coding	Glycosyl hydrolase family 10 protein		Glycosyl hydrolase family 10 protein;(source:Araport11)
AT4G33910.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G33840.1	protein_coding	Glycosyl hydrolase family 10 protein		Glycosyl hydrolase family 10 protein;(source:Araport11)
AT4G33920.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT4G33850.1	pseudogene	glycosyl hydrolase family 10 protein	Pseudogene of AT4G33850; glycosyl hydrolase family 10 protein	pseudogene of Glycosyl hydrolase family 10 protein;(source:Araport11)
AT4G33930.1	protein_coding	Cupredoxin superfamily protein	Encodes a protein with 14.6% glycine residues, similar to hyphally regulated protein from Candida albicans, PIR2:S58135	Cupredoxin superfamily protein;(source:Araport11)
AT4G33860.1	protein_coding	Glycosyl hydrolase family 10 protein		Glycosyl hydrolase family 10 protein;(source:Araport11)
AT4G33940.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G33870.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT4G33950.1	protein_coding	Protein kinase superfamily protein	Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.  Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network.	Protein kinase superfamily protein;(source:Araport11)
AT4G33880.1	protein_coding	ROOT HAIR DEFECTIVE 6-LIKE 2	RSL2 was expressed concurrently with RSL4 and its expression was controlled by RHD6 and RSL1. Required for root-hair growth.	ROOT HAIR DEFECTIVE 6-LIKE 2;(source:Araport11)
AT4G33960.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G33890.1	protein_coding			transcriptional regulator of RNA polII, SAGA, subunit;(source:Araport11)
AT4G33970.1	protein_coding	Leucine-rich repeat (LRR) family protein	Pollen expressed protein required for pollen tube growth.Along with other members of the LRX family, itnteracts with RALF4 to control pollen tube growth and integrity. Loss of function results in premature pollen tube rupture and reduced fertility.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G33900.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G33980.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G33990.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G21620.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G21630.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G21710.1	protein_coding	DNA-directed RNA polymerase family protein	Encodes the unique second-largest subunit of DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB2 and a homolog of the E. coli RNA polymerase beta subunit.	DNA-directed RNA polymerase family protein;(source:Araport11)
AT4G21640.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G21720.1	protein_coding			defensin-like protein;(source:Araport11)
AT4G21650.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G21730.1	pseudogene		pseudogene of N-ethylmaleimide sensitive factor (NSF)	pseudogene of AAA-type ATPase family protein;(source:Araport11)
AT4G21660.1	protein_coding	proline-rich spliceosome-associated (PSP) family protein		proline-rich spliceosome-associated (PSP) family protein;(source:Araport11)
AT4G21740.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G21750.1	protein_coding	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein	Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny.  Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression.  Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein;(source:Araport11)
AT4G21670.1	protein_coding	C-terminal domain phosphatase-like 1	encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl.	C-terminal domain phosphatase-like 1;(source:Araport11)
AT4G21680.1	protein_coding	NITRATE TRANSPORTER 1.8	Encodes a nitrate transporter (NRT1.8).  Functions in nitrate removal from the xylem sap. Mediates cadmium tolerance.	NITRATE TRANSPORTER 1.8;(source:Araport11)
AT4G21760.1	protein_coding	beta-glucosidase 47		beta-glucosidase 47;(source:Araport11)
AT4G21690.1	protein_coding	gibberellin 3-oxidase 3		gibberellin 3-oxidase 3;(source:Araport11)
AT4G21770.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT4G21700.1	protein_coding	Protein of unknown function (DUF2921)		DUF2921 family protein, putative (DUF2921);(source:Araport11)
AT4G21780.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G21790.1	protein_coding	tobamovirus multiplication 1	encodes a host factor that is required for TMV virus multiplication. The mRNA is cell-to-cell mobile.	tobamovirus multiplication 1;(source:Araport11)
AT4G21800.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes QQT2.  Required for early embryo development.  qqt1 mutant lines are embryo-defective.  Participates in the organization of microtubules during cell division.  Interacts with QQT1 (encoded by AT5G22370).	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G33250.1	protein_coding	eukaryotic translation initiation factor 3K	Encodes initiation factor 3k (EIF3k).	eukaryotic translation initiation factor 3K;(source:Araport11)
AT4G33260.1	protein_coding	Transducin family protein / WD-40 repeat family protein	Encodes a CDC20 protein that interacts with APC subunits, components of the mitochondrial checkpoint complex and mitotic cyclin substrates and is indispensable for normal plant development and fertility.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G33350.1	protein_coding	Tic22-like family protein		Tic22-like family protein;(source:Araport11)
AT4G33270.1	protein_coding	Transducin family protein / WD-40 repeat family protein	Encodes a CDC20 protein that interacts with APC subunits, components of the mitochondrial checkpoint complex and mitotic cyclin substrates and is indispensable for normal plant development and fertility.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G33440.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G33360.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes an NAD+-dependent dehydrogenase that oxidizes farnesol more efficiently than other prenyl alcohol   substrates.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G33280.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT4G33450.1	protein_coding	myb domain protein 69	Member of the R2R3 factor gene family.	myb domain protein 69;(source:Araport11)
AT4G33370.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT4G33290.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G33460.1	protein_coding	ABC transporter family protein	member of NAP subfamily	ABC transporter family protein;(source:Araport11)
AT4G33380.1	protein_coding			dimethylallyl, adenosine tRNA methylthiotransferase;(source:Araport11)
AT4G33300.1	protein_coding	ADR1-like 1	Encodes a member of the ADR1 family nucleotide-binding leucine-rich repeat (NB-LRR) immune receptors.	ADR1-like 1;(source:Araport11)
AT4G33470.1	protein_coding	histone deacetylase 14	Encodes HDA14, a member of the histone deacetylase family proteins that can deacetylate a-tubulin, associates with a/b-tubulin and is retained on GTP/taxol-stabilized microtubules, at least in part, by direct association with the PP2A-A2 subunit.  The association of a histone deacetylase with PP2A suggests a direct link between protein phosphorylation and acetylation.	histone deacetylase 14;(source:Araport11)
AT4G33390.1	protein_coding	Plant protein of unknown function (DUF827)		WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827);(source:Araport11)
AT4G33310.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G33480.1	protein_coding			BTB/POZ domain protein TNFAIP protein;(source:Araport11)
AT4G33400.1	protein_coding	Vacuolar import/degradation, Vid27-related protein		Vacuolar import/degradation, Vid27-related protein;(source:Araport11)
AT4G33320.1	protein_coding	Plant protein of unknown function (DUF641)		myosin-4 protein (DUF641);(source:Araport11)
AT4G33490.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G33410.1	protein_coding	SIGNAL PEPTIDE PEPTIDASE-LIKE 1		SIGNAL PEPTIDE PEPTIDASE-LIKE 1;(source:Araport11)
AT4G33330.1	protein_coding	plant glycogenin-like starch initiation protein 3	Encodes a glucuronyltransferase responsible  for the addition of GlcA residues onto xylan and for secondary wall deposition.	plant glycogenin-like starch initiation protein 3;(source:Araport11)
AT4G33500.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT4G33420.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT4G33510.1	protein_coding	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase	Enzyme catalyzing the first committed step in aromatic amino acid biosynthesis The mRNA is cell-to-cell mobile.	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase;(source:Araport11)
AT4G33430.1	protein_coding	BRI1-associated receptor kinase	Leu-rich receptor Serine/threonine protein kinase. Component of BR signaling that interacts with BRI1 in vitro and in vivo to form a heterodimer. Brassinolide-dependent association of BRI1  and BAK1 in vivo. Phosphorylation of both BRI1 and BAK1 on Thr residues was BR dependent. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome.	BRI1-associated receptor kinase;(source:Araport11)
AT4G33520.1	protein_coding	P-type ATP-ase 1	Encodes a putative metal-transporting P-type ATPase PAA1.  An alternative-splicing event of the PAA1 pre-mRNA produces a copper chaperon named PCH1. The mRNA is cell-to-cell mobile.	P-type ATP-ase 1;(source:Araport11)
AT4G13120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.6e-50 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G13210.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G13130.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G13220.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G13230.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT4G13150.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G13240.1	protein_coding	RHO guanyl-nucleotide exchange factor 9	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 9;(source:Araport11)
AT4G13160.1	protein_coding	Protein of unknown function, DUF593		zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT4G13250.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes a chlorophyll b reductase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II).	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G13170.1	protein_coding	Ribosomal protein L13 family protein		Ribosomal protein L13 family protein;(source:Araport11)
AT4G13260.1	protein_coding	Flavin-binding monooxygenase family protein	Encodes YUC2. Catalyzes conversion of IPA (indole-3-pyruvic acid) to IAA (indole-3-acetic acid) in auxin biosynthesis pathway.	Flavin-binding monooxygenase family protein;(source:Araport11)
AT4G13180.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G13190.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G13200.1	protein_coding		Plastoglobular protein which is involved in chloroplast function and thylakoid formation.	hypothetical protein;(source:Araport11)
AT4G13710.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G13630.1	protein_coding	Protein of unknown function, DUF593		zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT4G13720.1	protein_coding	Inosine triphosphate pyrophosphatase family protein		Inosine triphosphate pyrophosphatase family protein;(source:Araport11)
AT4G13640.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT4G13810.1	protein_coding	receptor like protein 47		receptor like protein 47;(source:Araport11)
AT4G13730.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT4G13650.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G13820.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G13660.1	protein_coding	pinoresinol reductase 2	Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems.  Shows preference for pinoresinol and not lariciresinol. The mRNA is cell-to-cell mobile.	pinoresinol reductase 2;(source:Araport11)
AT4G13830.1	protein_coding	DNAJ-like 20	DnaJ-like protein (J20); nuclear gene	DNAJ-like 20;(source:Araport11)
AT4G13750.1	protein_coding	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	Encodes NO VEIN (NOV), a plant-specific nuclear factor required for leaf vascular development, cellular patterning and stem cell maintenance in the root meristem, as well as for cotyledon outgrowth and separation. nov mutations affect many aspects of auxin-dependent development without directly affecting auxin perception.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein;(source:Araport11)
AT4G13670.1	protein_coding	plastid transcriptionally active 5		plastid transcriptionally active 5;(source:Araport11)
AT4G13840.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT4G13760.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G13680.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT4G13850.1	protein_coding	glycine-rich RNA-binding protein 2	Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.	glycine-rich RNA-binding protein 2;(source:Araport11)
AT4G13770.1	protein_coding	cytochrome P450, family 83, subfamily A, polypeptide 1	Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan.   Also has a role in auxin homeostasis.	cytochrome P450, family 83, subfamily A, polypeptide 1;(source:Araport11)
AT4G13860.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G13690.1	protein_coding			RNA-binding protein;(source:Araport11)
AT4G13780.1	protein_coding	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative		methionine-tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS;(source:Araport11)
AT4G13700.1	protein_coding	purple acid phosphatase 23		purple acid phosphatase 23;(source:Araport11)
AT4G13870.1	protein_coding	Werner syndrome-like exonuclease	Encodes a protein with homology to the exonuclease domain of hWRN-p of human protein Werner Syndrome Exonuclease (WEX). Forms a complex with the heterodimeric factor Ku. The interaction with KU stimulates WEX exonuclease activity.	Werner syndrome-like exonuclease;(source:Araport11)
AT4G13790.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G13880.1	protein_coding	receptor like protein 48		receptor like protein 48;(source:Araport11)
AT4G13800.1	protein_coding	Protein of unknown function (DUF803)		magnesium transporter NIPA (DUF803);(source:Araport11)
AT4G13890.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT4G13900.1	pseudogene			pseudogene of receptor like protein 47;(source:Araport11)
AT4G13620.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. The mRNA is cell-to-cell mobile.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G21510.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G21520.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G21530.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G21450.1	protein_coding	PapD-like superfamily protein		PapD-like superfamily protein;(source:Araport11)
AT4G21460.1	protein_coding	Ribosomal protein S24/S35, mitochondrial		Ribosomal protein S24/S35;(source:Araport11)
AT4G21540.1	protein_coding	sphingosine kinase 1	Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination.	sphingosine kinase 1;(source:Araport11)
AT4G21470.1	protein_coding	riboflavin kinase/FMN hydrolase	Bifunctional enzyme that catalyzes hydrolysis of FMN to riboflavin, and phosphorylation of riboflavin to FMN. The mRNA is cell-to-cell mobile.	riboflavin kinase/FMN hydrolase;(source:Araport11)
AT4G21550.1	protein_coding	VP1/ABI3-like 3		VP1/ABI3-like 3;(source:Araport11)
AT4G21480.1	protein_coding	sugar transporter protein 12	Putative sugar transporter.  Expressed in nematode-induced root syncytia.	sugar transporter protein 12;(source:Araport11)
AT4G21490.1	protein_coding	NAD(P)H dehydrogenase B3		NAD(P)H dehydrogenase B3;(source:Araport11)
AT4G21500.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G20060.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G19980.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G20070.1	protein_coding	allantoate amidohydrolase	The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in  purine turnover in Arabidopsis. The mRNA is cell-to-cell mobile.	allantoate amidohydrolase;(source:Araport11)
AT4G19990.1	protein_coding	FAR1-related sequence 1		FAR1-related sequence 1;(source:Araport11)
AT4G20080.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein		Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein;(source:Araport11)
AT4G20090.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G19900.1	protein_coding	alpha 1,4-glycosyltransferase family protein		alpha 1,4-glycosyltransferase family protein;(source:Araport11)
AT4G20000.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT4G19920.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT4G20010.1	protein_coding	plastid transcriptionally active 9	Organellar Single-stranded DNA Binding protein. Decreases MMEJ on long ssDNA templates.	plastid transcriptionally active 9;(source:Araport11)
AT4G19930.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G20020.1	protein_coding		Encodes a protein involved in RNA editing in mitochondria. Member of MORF family consisting of of nine full-length proteins encoded in the nuclear genome. MORF proteins are required for all RNA editing events in plastids and for many, possibly also all, sites in mitochondria. Potential link between the RNA binding PPR protein and the protein contributing the enzymatic activity in RNA editing.	multiple organellar RNA editing factor;(source:Araport11)
AT4G19940.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G20030.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G19950.1	protein_coding			polyadenylate-binding protein 1-B-binding protein;(source:Araport11)
AT4G19960.1	protein_coding	K+ uptake permease 9	Encodes a potassium ion transmembrane transporter. Also mediates cesium uptake when expressed in E. coli. The mRNA is cell-to-cell mobile.	K+ uptake permease 9;(source:Araport11)
AT4G20040.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G19970.1	protein_coding			nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT4G20050.1	protein_coding	Pectin lyase-like superfamily protein	Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.	Pectin lyase-like superfamily protein;(source:Araport11)
AT4G29170.1	protein_coding	Mnd1 family protein	A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis.	Mnd1 family protein;(source:Araport11)
AT4G29180.1	protein_coding	root hair specific 16		root hair specific 16;(source:Araport11)
AT4G29110.1	protein_coding			cotton fiber protein;(source:Araport11)
AT4G29120.1	protein_coding	6-phosphogluconate dehydrogenase family protein		6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT4G29130.1	protein_coding	hexokinase 1	Encodes a hexokinase (HXK1) in the plant glucose-signaling network.  Functions as a glucose sensor to interrelate nutrient, light, and hormone signaling networks for controlling growth and development in response to the changing environment.	hexokinase 1;(source:Araport11)
AT4G29140.1	protein_coding	MATE efflux family protein	Encodes Activated Disease Susceptibility 1 (ADS1), a putative MATE (multidrug and toxic compound extrusion) transport protein that negatively regulates plant disease resistance.	MATE efflux family protein;(source:Araport11)
AT4G29150.1	protein_coding	IQ-domain 25	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 25;(source:Araport11)
AT4G29160.1	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT4G37610.1	protein_coding	BTB and TAZ domain protein 5	BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.	BTB and TAZ domain protein 5;(source:Araport11)
AT4G37620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09490.1);(source:TAIR10)
AT4G37630.1	protein_coding	cyclin d5;1	core cell cycle genes; a quantitative trait gene for endoreduplication.	cyclin d5;(source:Araport11)
AT4G37640.1	protein_coding	calcium ATPase 2	Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum.  Belongs to plant 2B ATPase's with an N-terminal autoinhibitor.	calcium ATPase 2;(source:Araport11)
AT4G37650.1	protein_coding	GRAS family transcription factor	Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains. SHORT-ROOT forms a network in combination with JACKDAW, BLUEJAY AND SCARECROW to regulate tissue patterning through asymmetric cell division. The ground tissue lineage remains in shortroot mutant, while it is progressively lost in the triple mutant bluejay jackdaw scarecrow and double mutant jackdaw scarecrow. In addition, ground tissue basal identity remains in shortroot mutant while it is defective in the quadruple mutant bluejay jackdaw magpie nutcracker.	GRAS family transcription factor;(source:Araport11)
AT4G37570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52410.1);(source:TAIR10)
AT4G37660.1	protein_coding	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein		Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein;(source:Araport11)
AT4G37580.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein	involved in apical hook development. putative N-acetyltransferase	Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT4G37590.1	protein_coding	Phototropic-responsive NPH3 family protein	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590).  Involved in auxin-mediated organogenesis.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT4G37670.1	protein_coding	N-acetyl-l-glutamate synthase 2		N-acetyl-l-glutamate synthase 2;(source:Araport11)
AT4G37680.1	protein_coding	heptahelical protein 4	heptahelical transmembrane protein HHP4	heptahelical protein 4;(source:Araport11)
AT4G37690.1	protein_coding	Galactosyl transferase GMA12/MNN10 family protein	Unlike its close paralog MUCI10 (At2g22900), GT6 is not required for the biosynthesis of seed coat mucilage. GT6 is preferentially expressed in sub-epidermal cell layers of the seed coat.	Galactosyl transferase GMA12/MNN10 family protein;(source:Araport11)
AT4G39050.1	protein_coding	Kinesin motor family protein		Kinesin motor family protein;(source:Araport11)
AT4G38970.1	protein_coding	fructose-bisphosphate aldolase 2	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	fructose-bisphosphate aldolase 2;(source:Araport11)
AT4G39060.1	protein_coding			LOW protein: coatomer subunit alpha-1-like protein;(source:Araport11)
AT4G38980.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G39070.1	protein_coding	B-box zinc finger family protein	Encodes BZS1, a brassinosteroids-regulated BZR1 target (BRBT) gene. BZS1 is a putative zinc finger transcription factor. Expression of BZS1 was increased under BR-deficient condition and repressed by BR. Transgenic Arabidopsis plants overexpressing BZS1 showed a hypersensitivity to the BR biosynthetic inhibitor brassinazole (BRZ). In contrast, transgenic plants expressing reduced level of BZS1 had longer hypocotyls than wild type when grown on BRZ.	B-box zinc finger family protein;(source:Araport11)
AT4G38990.1	protein_coding	glycosyl hydrolase 9B16		glycosyl hydrolase 9B16;(source:Araport11)
AT4G39080.1	protein_coding	vacuolar proton ATPase A3	Vacuolar proton ATPase subunit VHA-a isoform 3. Localized in the tonoplast. The mRNA is cell-to-cell mobile.	vacuolar proton ATPase A3;(source:Araport11)
AT4G39090.1	protein_coding	Papain family cysteine protease	Similar to cysteine proteinases, induced by desiccation but not abscisic acid.  Required for RRS1-R mediated resistance against Ralstonia solanacearum.  Interacts with the R. solanacearum type III effector PopP2.  RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R–mediated resistance response.	Papain family cysteine protease;(source:Araport11)
AT4G38910.1	protein_coding	basic pentacysteine 5	Encodes a basic pentacysteine protein that is localized to the nucleus and specifically binds in vitro to GA dinucleotide repeats.	basic pentacysteine 5;(source:Araport11)
AT4G39000.1	protein_coding	glycosyl hydrolase 9B17		glycosyl hydrolase 9B17;(source:Araport11)
AT4G38920.1	protein_coding	vacuolar-type H(+)-ATPase C3		vacuolar-type H[+]-ATPase C3;(source:Araport11)
AT4G39010.1	protein_coding	glycosyl hydrolase 9B18	Cellulase involved in cell wall modification during valve dehiscence.	glycosyl hydrolase 9B18;(source:Araport11)
AT4G38930.1	protein_coding	Ubiquitin fusion degradation UFD1 family protein		Ubiquitin fusion degradation UFD1 family protein;(source:Araport11)
AT4G39020.1	protein_coding	SH3 domain-containing protein		SH3 domain-containing protein;(source:Araport11)
AT4G38940.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G39030.1	protein_coding	MATE efflux family protein	Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient.	MATE efflux family protein;(source:Araport11)
AT4G38950.1	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT4G38960.1	protein_coding	B-box type zinc finger family protein	BBX19 is a B-box containing transcriptional regulator involved in photomporphogenesis and flowering.	B-box type zinc finger family protein;(source:Araport11)
AT4G39040.1	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain protein		RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT4G20290.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G20210.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT4G20300.1	protein_coding	Protein of unknown function (DUF1639)		Serine/Threonine-kinase, putative (DUF1639);(source:Araport11)
AT4G20220.1	protein_coding	Reverse transcriptase (RNA-dependent DNA polymerase)		Reverse transcriptase (RNA-dependent DNA polymerase);(source:Araport11)
AT4G20310.1	protein_coding	Peptidase M50 family protein	Encodes a Golgi-localized protease that can cleave the  transcription factors bZIP17 and bZIP28 that are translocated from the ER through the Golgi so that the transcription factors can be released to translocate into the nucleus.	Peptidase M50 family protein;(source:Araport11)
AT4G20320.1	protein_coding	CTP synthase family protein	Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT4G20140.1	protein_coding	Leucine-rich repeat transmembrane protein kinase	Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase.  GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis. Necessary for localizing CASPARIAN STRIP DOMAIN PROTEINS (CASPs) - major players of endodermal differentiation - into an uninterrupted, ring-like domain.	Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT4G20150.1	protein_coding			excitatory amino acid transporter;(source:Araport11)
AT4G20230.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		terpenoid synthase superfamily protein;(source:Araport11)
AT4G20160.1	protein_coding			golgin family A protein;(source:Araport11)
AT4G20240.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 27	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 27;(source:Araport11)
AT4G20170.1	protein_coding	Domain of unknown function (DUF23)		glycosyltransferase family protein (DUF23);(source:Araport11)
AT4G20250.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G20180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.2e-10 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT4G20260.1	protein_coding	plasma-membrane associated cation-binding protein 1	Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and  PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels. The mRNA is cell-to-cell mobile.	plasma-membrane associated cation-binding protein 1;(source:Araport11)
AT4G20190.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G20270.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function.  It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. The mRNA is cell-to-cell mobile.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT4G20200.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT4G20280.1	protein_coding	TBP-associated factor 11	Encodes TAF11, a putative TBP-associated factor (TBP: TATA binding protein).	TBP-associated factor 11;(source:Araport11)
AT4G08000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.0e-136 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT4G08010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 2.4e-27 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT4G08020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 2.5e-93 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT4G07940.1	protein_coding	Protein of unknown function (DUF3245)		pre-mRNA-splicing factor CWC22-like protein, putative (DUF3245);(source:Araport11)
AT4G08030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-66 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07950.1	protein_coding	DNA-directed RNA polymerase, subunit M, archaeal		DNA-directed RNA polymerase, subunit M, archaeal;(source:Araport11)
AT4G07960.1	protein_coding	Cellulose-synthase-like C12	encodes a gene similar to cellulose synthase	Cellulose-synthase-like C12;(source:Araport11)
AT4G07970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein, similar to A. thaliana hypothetical proteins;(source:TAIR10)
AT4G22060.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT4G21980.1	protein_coding	Ubiquitin-like superfamily protein	Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of  vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced  carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization  is more abundant upon N starvation. The mRNA is cell-to-cell mobile.	Ubiquitin-like superfamily protein;(source:Araport11)
AT4G22070.1	protein_coding	WRKY DNA-binding protein 31	member of WRKY Transcription Factor; Group II-b	WRKY DNA-binding protein 31;(source:Araport11)
AT4G21990.1	protein_coding	APS reductase 3	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.	APS reductase 3;(source:Araport11)
AT4G22080.1	protein_coding	root hair specific 14		root hair specific 14;(source:Araport11)
AT4G22000.1	protein_coding			tyrosine sulfotransferase-like protein;(source:Araport11)
AT4G22090.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G22010.1	protein_coding	SKU5  similar 4		SKU5 similar 4;(source:Araport11)
AT4G22100.1	protein_coding	beta glucosidase 2		beta glucosidase 2;(source:Araport11)
AT4G22020.1	pseudogene		Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of hypothetical protein;(source:Araport11)
AT4G22110.1	protein_coding	GroES-like zinc-binding dehydrogenase family protein		GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT4G22030.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box protein with a domain protein;(source:Araport11)
AT4G22120.1	protein_coding	ERD (early-responsive to dehydration stress) family protein	Calcium-permeable stretch activated cation channel.	ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G22040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.3e-193 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT4G22130.1	protein_coding	STRUBBELIG-receptor family 8		STRUBBELIG-receptor family 8;(source:Araport11)
AT4G22050.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G22140.1	protein_coding	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein	Encoding a chromatin remodeling  factor that regulates flowering time.	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT4G26000.1	protein_coding	RNA-binding KH domain-containing protein	Encodes a novel Arabidopsis gene encoding a polypeptide with K-homology (KH) RNA-binding modules, which acts on vegetative growth and  pistil development. Genetic studies suggest that PEP interacts with element(s) of the CLAVATA signaling pathway.	RNA-binding KH domain-containing protein;(source:Araport11)
AT4G26010.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT4G26100.1	protein_coding	casein kinase 1	Encodes a member of the casein kinase 1 protein family that is expressed in punctate particles at the cell periphery suggesting possible plasmodesmatal localization (member of CKL-B group).	casein kinase 1;(source:Araport11)
AT4G26020.1	protein_coding			4/1 protein short form protein;(source:Araport11)
AT4G26110.1	protein_coding	nucleosome assembly protein1;1	Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes. The mRNA is cell-to-cell mobile. Plants mutated in three ubiquitously expressed NAP1 genes (NAP1;1~NAP1;3) and organ-specifically expressed NAP1;4 gene show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. The NAP1 genes act synergistically with NRP genes in promoting somatic homologous recombination.	nucleosome assembly protein1;(source:Araport11)
AT4G26030.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT4G26120.1	protein_coding	Ankyrin repeat family protein / BTB/POZ domain-containing protein		Ankyrin repeat family protein / BTB/POZ domain-containing protein;(source:Araport11)
AT4G26040.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G26130.1	protein_coding			cotton fiber protein;(source:Araport11)
AT4G26050.1	protein_coding	plant intracellular ras group-related LRR 8	Encodes PIRL8, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. The mRNA is cell-to-cell mobile.	plant intracellular ras group-related LRR 8;(source:Araport11)
AT4G26140.1	protein_coding	beta-galactosidase 12	putative beta-galactosidase	beta-galactosidase 12;(source:Araport11)
AT4G26060.1	protein_coding	Ribosomal protein L18ae family		Ribosomal protein L18ae family;(source:Araport11)
AT4G26150.1	protein_coding	cytokinin-responsive gata factor 1	Encodes a member of the GATA factor family of zinc finger transcription factors. Modulate chlorophyll biosynthesis and glutamate synthase (GLU1/Fd-GOGAT) expression.	cytokinin-responsive gata factor 1;(source:Araport11)
AT4G26070.1	protein_coding	MAP kinase/ ERK kinase 1	Member of MAP Kinase Kinase.  Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding.	MAP kinase/ ERK kinase 1;(source:Araport11)
AT4G26160.1	protein_coding	atypical CYS  HIS rich thioredoxin 1	Encodes a member of the thioredoxin family protein.  Located in the chloroplast.  Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate   dehydrogenase.	atypical CYS HIS rich thioredoxin 1;(source:Araport11)
AT4G26080.1	protein_coding	Protein phosphatase 2C family protein	Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure.	Protein phosphatase 2C family protein;(source:Araport11)
AT4G26090.1	protein_coding	NB-ARC domain-containing disease resistance protein	Encodes a plasma membrane protein with  leucine-rich repeat, leucine zipper, and P loop domains that confers resistance to Pseudomonas syringae infection by interacting with the avirulence gene avrRpt2.  RPS2 protein interacts directly with plasma membrane associated protein RIN4 and this interaction is disrupted by avrRpt2. The mRNA is cell-to-cell mobile.	NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT4G38200.1	protein_coding	SEC7-like guanine nucleotide exchange family protein	Encodes one of the functionally redundant ARF guanine-nucleotide exchange factors (ARF-GEFs). Functions as regulators of post-Golgi trafficking.	SEC7-like guanine nucleotide exchange family protein;(source:Araport11)
AT4G38120.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G38040.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT4G38210.1	protein_coding	expansin A20	expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A20;(source:Araport11)
AT4G38130.1	protein_coding	histone deacetylase 1	Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7.  Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. HDA19 acts in a WOX5 mediated pathway to maintain columella stem cell fate by repressing CDF4.	histone deacetylase 1;(source:Araport11)
AT4G38050.1	protein_coding	Xanthine/uracil permease family protein		Xanthine/uracil permease family protein;(source:Araport11)
AT4G38220.1	protein_coding	Peptidase M20/M25/M40 family protein		Peptidase M20/M25/M40 family protein;(source:Araport11)
AT4G38140.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G37970.1	protein_coding	cinnamyl alcohol dehydrogenase 6		cinnamyl alcohol dehydrogenase 6;(source:Araport11)
AT4G38230.1	protein_coding	calcium-dependent protein kinase 26	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 26;(source:Araport11)
AT4G38060.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G38150.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G38070.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		transcription factor bHLH131-like protein;(source:Araport11)
AT4G38240.1	protein_coding	alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative	Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.	alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase;(source:Araport11)
AT4G38160.1	protein_coding	Mitochondrial transcription termination factor family protein	Encodes a member of the mitochondrial transcription termination factor family. MTERF6 is localized to both the mitochondria and chloroplast. It is required for ILE tRNA maturation during chloroplast development. Loss of function of MTERF6 results in plants with defective chloroplasts or reduced rate of photosynthesis when MTERF6 expression is low.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT4G38170.1	protein_coding	FAR1-related sequence 9		FAR1-related sequence 9;(source:Araport11)
AT4G37890.1	protein_coding	Zinc finger (C3HC4-type RING finger) family protein		Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT4G37900.1	protein_coding	Protein of unknown function (duplicated DUF1399)	Protein of unknown function that contains DUF1399 domain and putative RNA binding motif. Expressed in many plant tissues and is involved in many aspects of plant growth and development as well as response to salt stress.	hypothetical protein (duplicated DUF1399);(source:Araport11)
AT4G37980.1	protein_coding	elicitor-activated gene 3-1	NADPH-dependent cinnamaldehyde and hexenal reductase involved in the production of green leaf volitile compounds.	cinnamyl alcohol dehydrogenase 7;(source:Araport11)
AT4G37910.1	protein_coding	mitochondrial heat shock protein 70-1		mitochondrial heat shock protein 70-1;(source:Araport11)
AT4G37990.1	protein_coding	elicitor-activated gene 3-2	Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria.  Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity.	cinnamyl alcohol dehydrogenase 8;(source:Araport11)
AT4G38080.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G37920.1	protein_coding			endoribonuclease E-like protein;(source:Araport11)
AT4G38000.1	protein_coding	DNA binding with one finger 4.7		DNA binding with one finger 4.7;(source:Araport11)
AT4G38090.1	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		ribosomal protein S5 domain protein;(source:Araport11)
AT4G37930.1	protein_coding	serine transhydroxymethyltransferase 1	Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate.  Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants.	serine transhydroxymethyltransferase 1;(source:Araport11)
AT4G38010.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT4G38180.1	protein_coding	FAR1-related sequence 5		FAR1-related sequence 5;(source:Araport11)
AT4G38100.1	protein_coding			CURVATURE THYLAKOID 1D-like protein;(source:Araport11)
AT4G37940.1	protein_coding	AGAMOUS-like 21	encodes a MADS box protein, highly expressed in the root.	AGAMOUS-like 21;(source:Araport11)
AT4G38020.1	protein_coding	tRNA/rRNA methyltransferase (SpoU) family protein		tRNA/rRNA methyltransferase (SpoU) family protein;(source:Araport11)
AT4G38190.1	protein_coding	cellulose synthase like D4	encodes a gene similar to cellulose synthase	cellulose synthase like D4;(source:Araport11)
AT4G37950.1	protein_coding	Rhamnogalacturonate lyase family protein		Rhamnogalacturonate lyase family protein;(source:Araport11)
AT4G38030.1	protein_coding	Rhamnogalacturonate lyase family protein		Rhamnogalacturonate lyase family protein;(source:Araport11)
AT4G38550.1	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G38560.1	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G38570.1	protein_coding	probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2		Putative CDP-diacylglycerol-inositol 3-phosphatidyltransferase 2;(source:Araport11)
AT4G38580.1	protein_coding	farnesylated protein 6	putative farnesylated protein (At4g38580) mRNA, complete	farnesylated protein 6;(source:Araport11)
AT4G38590.1	protein_coding	beta-galactosidase 14	putative beta-galactosidase (BGAL14 gene)	beta-galactosidase 14;(source:Araport11)
AT4G38600.1	protein_coding	HEAT repeat ;HECT-domain (ubiquitin-transferase)	encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.	HECT ubiquitin protein ligase family protein KAK;(source:Araport11)
AT4G28520.1	protein_coding	cruciferin 3	Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	cruciferin 3;(source:Araport11)
AT4G28440.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT4G28360.1	protein_coding	Ribosomal protein L22p/L17e family protein		Ribosomal protein L22p/L17e family protein;(source:Araport11)
AT4G28530.1	protein_coding	NAC domain containing protein 74	Member of NAC family of transcription factors. Along with NAC2, KIR1 positively regulates programmed cell death of stigmatic tissue.	NAC domain containing protein 74;(source:Araport11)
AT4G28450.1	protein_coding	nucleotide binding;protein binding	This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	WD repeat and SOF domain-containing protein 1;(source:Araport11)
AT4G28370.1	protein_coding	RING/U-box superfamily protein	Encodes an E3 ubiquitin ligase that is involved in plant cell wall modification, seed mucilage extrusion, and controls the degree of pectin methylesterification in seed mucilage. fly1 mutant seeds release more compact mucilage capsules and detached outer tangential primary walls when hydrated in water. Fly1 is located in the endomembrane system, likely localized in late endosome/multivesicular bodies/prevacular compartment.  It has been shown to ubiquitinate proteins in conjunction with UBA1 and UBC8.	RING/U-box superfamily protein;(source:Araport11)
AT4G28540.1	protein_coding	casein kinase I-like 6	Member of CKL gene family (CKL-C group).	casein kinase I-like 6;(source:Araport11)
AT4G28460.1	protein_coding		Activates immune responses through RECEPTOR-LIKE KINASE7 (RLK7). Induces stomatal closure is dependent on RLK7 and the transcription of genes involved in SA production and SA-dependent stomatal  closure. SA promotes the flg22-induced expression of PIP1 preligand, prePIP1.	transmembrane protein;(source:Araport11)
AT4G28380.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G28550.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT4G28470.1	protein_coding	26S proteasome regulatory subunit S2 1B	encoding the RPN subunits of the 26S proteasome	26S proteasome regulatory subunit S2 1B;(source:Araport11)
AT4G28390.1	protein_coding	ADP/ATP carrier 3	Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli).	ADP/ATP carrier 3;(source:Araport11)
AT4G28480.1	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT4G28400.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT4G28490.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Member of Receptor kinase-like protein family. Controls the separation step of floral organ abscission. The mRNA is cell-to-cell mobile.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT4G28410.1	protein_coding	Tyrosine transaminase family protein		Tyrosine transaminase family protein;(source:Araport11)
AT4G28500.1	protein_coding	NAC domain containing protein 73		NAC domain containing protein 73;(source:Araport11)
AT4G28510.1	protein_coding	prohibitin 1	prohibitin 1 (Atphb1)	prohibitin 1;(source:Araport11)
AT4G28330.1	protein_coding			pyrroline-5-carboxylate reductase;(source:Araport11)
AT4G28340.1	protein_coding			pyrroline-5-carboxylate reductase;(source:Araport11)
AT4G28420.1	protein_coding	Tyrosine transaminase family protein		Tyrosine transaminase family protein;(source:Araport11)
AT4G28350.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT4G28430.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT4G20670.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory-like protein;(source:Araport11)
AT4G20760.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G20680.1	protein_coding	Domain of unknown function (DUF26)		cysteine-rich repeat secretory protein, putative (DUF26);(source:Araport11)
AT4G20770.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G20690.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G20780.1	protein_coding	calmodulin like 42	Calcium sensor involved in trichome branching.	calmodulin like 42;(source:Araport11)
AT4G20700.1	protein_coding	Protein of unknown function (DUF1204)		RNA-binding;(source:Araport11)
AT4G20790.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G20710.1	pseudogene		Pseudogene of AT4G20710; DUF-26 IntrePro domain family protein	pseudogene of Domain of unknown function (DUF26);(source:Araport11)
AT4G20800.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT4G20720.1	protein_coding	dentin sialophosphoprotein-related		dentin sialophosphoprotein-like protein;(source:Araport11)
AT4G20730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1);(source:TAIR10)
AT4G20810.1	protein_coding	transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein		transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein;(source:Araport11)
AT4G20740.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT4G20820.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT4G20830.1	protein_coding	FAD-binding Berberine family protein	Encodes an oligogalacturonide oxidase that inactivates the elicitor-active oligogalacturonides (OGs). It is involved in plant immunity. Overexpressing plants are more resistant to B. cinerea.	FAD-binding Berberine family protein;(source:Araport11)
AT4G20840.1	protein_coding	FAD-binding Berberine family protein	Encodes an oligogalacturonide oxidase that inactivates the elicitor-active oligogalacturonides (OGs).	FAD-binding Berberine family protein;(source:Araport11)
AT4G05620.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G05630.1	protein_coding			B3 domain protein;(source:Araport11)
AT4G05640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G41855.1);(source:TAIR10)
AT4G23210.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 13	Encodes a Cysteine-rich receptor-like kinase (CRK13).  Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.	cysteine-rich RLK (RECEPTOR-like protein kinase) 13;(source:Araport11)
AT4G23220.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 14	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RECEPTOR-like kinase;(source:Araport11)
AT4G23310.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 23	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 23;(source:Araport11)
AT4G23230.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 15	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RECEPTOR-like kinase;(source:Araport11)
AT4G23150.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 7	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 7;(source:Araport11)
AT4G23240.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 16	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 16;(source:Araport11)
AT4G23160.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RECEPTOR-like kinase;(source:Araport11)
AT4G23250.1	protein_coding	kinases;protein kinases		cysteine-rich receptor-like protein kinase 17;(source:Araport11)
AT4G23170.1	protein_coding	receptor-like protein kinase-related family protein	Induced in response to Salicylic acid.Similar to receptor-like kinase 4 and 5. NPR1, a known positive regulator of the SA signaling pathway is responsible for the SA-dependent induction and constitutive repression of EP1 gene's basal expression. The mRNA is cell-to-cell mobile.	receptor-like protein kinase-related family protein;(source:Araport11)
AT4G23180.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 10	Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) The mRNA is cell-to-cell mobile.	cysteine-rich RLK (RECEPTOR-like protein kinase) 10;(source:Araport11)
AT4G23260.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 18	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 18;(source:Araport11)
AT4G23270.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 19	Encodes a cysteine-rich receptor-like protein kinase. The mRNA is cell-to-cell mobile.	cysteine-rich RLK (RECEPTOR-like protein kinase) 19;(source:Araport11)
AT4G23190.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 11	Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307)	cysteine-rich RLK (RECEPTOR-like protein kinase) 11;(source:Araport11)
AT4G23280.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 20	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 20;(source:Araport11)
AT4G23200.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 12	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 12;(source:Araport11)
AT4G23290.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 21	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 21;(source:Araport11)
AT4G23300.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 22	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 22;(source:Araport11)
AT4G38350.1	protein_coding	Patched family protein		Patched family protein;(source:Araport11)
AT4G38360.1	protein_coding	Protein of unknown function (DUF300)	LAZ1 is a DUF300 domain protein that appears to function in vacuolar transport effecting brassinosteroid and programmed cell dealth signaling pathways.	organic solute transporter ostalpha protein (DUF300);(source:Araport11)
AT4G38370.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT4G38380.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT4G38390.1	protein_coding	root hair specific 17		root hair specific 17;(source:Araport11)
AT4G38400.1	protein_coding	expansin-like A2	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin-like A2;(source:Araport11)
AT4G38410.1	protein_coding	Dehydrin family protein		Dehydrin family protein;(source:Araport11)
AT4G38420.1	protein_coding	SKU5 similar 9		SKU5 similar 9;(source:Araport11)
AT4G38430.1	protein_coding	rho guanyl-nucleotide exchange factor 1	Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity. ropgef1 mutants have defects in auxin transport that result in abnormal development of embryos and growth defects.	rho guanyl-nucleotide exchange factor 1;(source:Araport11)
AT4G24580.1	protein_coding	Rho GTPase activation protein (RhoGAP) with PH domain	Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube.	Rho GTPase activation protein (RhoGAP) with PH domain-containing protein;(source:Araport11)
AT4G24500.1	protein_coding	hydroxyproline-rich glycoprotein family protein	Encodes a proline-rich protein SICKLE (SIC). Required for development and abiotic stress tolerance. Involved in microRNA biogenesis. It is involved in mRNA splicing. It is a single copy gene in Arabidopsis and likely specific to higher plants. Along with RCN1, it functions in regulating auxin transport processes in part by regulating the recycling of PIN1 and PIN2 auxin transporters. It is required for circadian clock temperature responses.	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G24590.1	protein_coding			RING finger protein;(source:Araport11)
AT4G24510.1	protein_coding	HXXXD-type acyl-transferase family protein	Encodes a component of the fatty acid elongation machinery required for C28 to C30 fatty acid elongation.  It does not require the acyltransferase catalytic site for biological function.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT4G24680.1	protein_coding	modifier of snc1	Encodes MOS1 (MODIFIER OF snc1).  MOS1 contains a BAT2 domain that is conserved in plants and animals. MOS1 associates with the promoter of SNC1 and regulates its expression.	modifier of snc1;(source:Araport11)
AT4G24600.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G24520.1	protein_coding	P450 reductase 1	Encodes a cyp450 reductase likely to be involved in phenylpropanoid metabolism.	P450 reductase 1;(source:Araport11)
AT4G24690.1	protein_coding	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	Encodes NBR1, a selective autophagy substrate. The mRNA is cell-to-cell mobile.	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein;(source:Araport11)
AT4G24610.1	protein_coding			pesticidal crystal cry8Ba protein;(source:Araport11)
AT4G24530.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT4G24700.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G24540.1	protein_coding	AGAMOUS-like 24	Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain.	AGAMOUS-like 24;(source:Araport11)
AT4G24620.1	protein_coding	phosphoglucose isomerase 1	The PGI1 gene encodes the plastid phospho-glucose (Glc) isomerase. While pgi1-1 mutant has a deficiency in leaf starch synthesis, it accumulates starch in root cap cells. Flowering time of the pgi1-1 mutant is significantly delayed under short-day conditions.	phosphoglucose isomerase 1;(source:Araport11)
AT4G24710.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes an AAA+ ATPase that mediates meiotic chromosome remodeling  and crossover maturation.	pachytene checkpoint-like protein;(source:Araport11)
AT4G24550.1	protein_coding	Clathrin adaptor complexes medium subunit family protein	Encodes a component of the AP4 complex and is involved in vacuolar sorting of storage proteins.	Clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT4G24630.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT4G24560.1	protein_coding	ubiquitin-specific protease 16	Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation.	ubiquitin-specific protease 16;(source:Araport11)
AT4G24640.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein	Encodes AppB protein (AppB1).	Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT4G24730.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like protein;(source:Araport11)
AT4G24570.1	protein_coding	dicarboxylate carrier 2	Encodes one of the mitochondrial dicarboxylate carriers (DIC): DIC1 (AT2G22500), DIC2 (AT4G24570), DIC3 (AT5G09470). The mRNA is cell-to-cell mobile.	dicarboxylate carrier 2;(source:Araport11)
AT4G24650.1	protein_coding	isopentenyltransferase 4	AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cds	isopentenyltransferase 4;(source:Araport11)
AT4G24740.1	protein_coding	FUS3-complementing gene 2	a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.	LAMMER-type protein kinase AFC2;(source:Araport11)
AT4G24660.1	protein_coding	homeobox protein 22		homeobox protein 22;(source:Araport11)
AT4G24670.1	protein_coding	tryptophan aminotransferase related 2	Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.TAR2 is required for reprogramming root architecture in response to low nitrogen conditions.	tryptophan aminotransferase related 2;(source:Araport11)
AT4G35310.1	protein_coding	calmodulin-domain protein kinase 5	calmodulin-domain protein kinase CDPK isoform 5 (CPK5)	calmodulin-domain protein kinase 5;(source:Araport11)
AT4G35240.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632);(source:Araport11)
AT4G35320.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G35410.1	protein_coding	Clathrin adaptor complex small chain family protein		Clathrin adaptor complex small chain family protein;(source:Araport11)
AT4G35250.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	HCF244 is a member of the atypical short-chain dehydrogenase/reductase superfamily, a modified group, which has lost enzyme activity.HCF244 interacts with unknown partners in a 200-400 kD membrane associated complex.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G35260.1	protein_coding	isocitrate dehydrogenase 1	Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.	isocitrate dehydrogenase 1;(source:Araport11)
AT4G35270.1	protein_coding	Plant regulator RWP-RK family protein		Plant regulator RWP-RK family protein;(source:Araport11)
AT4G35350.1	protein_coding	xylem cysteine peptidase 1	tracheary element vacuolar protein	xylem cysteine peptidase 1;(source:Araport11)
AT4G35280.1	protein_coding	C2H2-like zinc finger protein	Target promoter of the male germline-specific transcription factor DUO1.	C2H2-like zinc finger protein;(source:Araport11)
AT4G35360.1	protein_coding	Uncharacterised conserved protein (UCP030210)		pantothenate kinase;(source:Araport11)
AT4G35290.1	protein_coding	glutamate receptor 2	Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family	glutamate receptor 2;(source:Araport11)
AT4G35370.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G35300.1	protein_coding	tonoplast monosaccharide transporter2		tonoplast monosaccharide transporter2;(source:Araport11)
AT4G35380.1	protein_coding	SEC7-like guanine nucleotide exchange family protein	Encodes one of the functionally redundant ARF guanine-nucleotide exchange factors (ARF-GEFs). Functions as regulators of post-Golgi trafficking.	SEC7-like guanine nucleotide exchange family protein;(source:Araport11)
AT4G35390.1	protein_coding	AT-hook protein of GA feedback 1		AT-hook protein of GA feedback 1;(source:Araport11)
AT4G35400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48250.1);(source:TAIR10)
AT4G36220.1	protein_coding	ferulic acid 5-hydroxylase 1	encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.	ferulic acid 5-hydroxylase 1;(source:Araport11)
AT4G36140.1	protein_coding	disease resistance protein (TIR-NBS-LRR class), putative		disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT4G36230.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G36150.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G36240.1	protein_coding	GATA transcription factor 7	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 7;(source:Araport11)
AT4G36160.1	protein_coding	NAC domain containing protein 76	Encodes a NAC-domain transcription factor that is expressed in developing xylem. Over expression of this protein causes ectopic secondary cell wall growth. Complements some of the cell wall defects seen in SND1/NST1 double mutants.	NAC domain containing protein 76;(source:Araport11)
AT4G36250.1	protein_coding	aldehyde dehydrogenase 3F1	Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures.	aldehyde dehydrogenase 3F1;(source:Araport11)
AT4G36170.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G36260.1	protein_coding	Lateral root primordium (LRP) protein-related	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Encodes protein with a single zinc finger motif and a members of a small gene family of putative transcription factors in which the SHORT INTERNODES (SHI) gene is found. STY2/STY1 double mutants showed defective style, stigma as well as serrated leaves.	Lateral root primordium (LRP) protein-like protein;(source:Araport11)
AT4G36180.1	protein_coding	Leucine-rich receptor-like protein kinase family protein		Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT4G36270.1	protein_coding	ATP binding	Member of the microrchidia protein family which have been described as epigenetic regulators and plant immune mediators, contains a hallmark GHKL-type ATPase domain in N-terminus.	ATP binding protein;(source:Araport11)
AT4G36190.1	protein_coding	Serine carboxypeptidase S28 family protein		Serine carboxypeptidase S28 family protein;(source:Araport11)
AT4G36280.1	protein_coding	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	Member of the microrchidia protein family which have been described as epigenetic regulators and plant immune mediators, contains a hallmark GHKL-type ATPase domain in N-terminus.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein;(source:Araport11)
AT4G36290.1	protein_coding	compromised recognition of TCV 1	R-protein-interacting protein that localizes to endosomes and functions in resistance gene–mediated immunity. Belongs to the conserved Microrchidia (MORC) adenosine triphosphatase (ATPase) family, predicted to catalyze alterations in chromosome superstructure. Required for heterochromatin condensation and gene silencing.	compromized recognition of TCV 1;(source:Araport11)
AT4G36210.1	protein_coding	Protein of unknown function (DUF726)		transmembrane/coiled-coil protein (DUF726);(source:Araport11)
AT4G08990.1	protein_coding	DNA (cytosine-5-)-methyltransferase family protein		DNA (cytosine-5-)-methyltransferase family protein;(source:Araport11)
AT4G09000.1	protein_coding	general regulatory factor 1	Encodes a 14-3-3 gene, designated GRF1 chi (for general regulatory factor1-G-box factor 14-3-3 homolog isoform chi). The major native forms of 14-3-3s are homo- and hetero-dimers, the biological functions of which are to interact physically with specific client proteins and thereby effect a change in the client. As a result, 14-3-3s are involved in a vast array of processes such as the response to stress, cell-cycle control, and apoptosis, serving as adapters, activators, and repressors. There are currently 133 full-length sequences available.	general regulatory factor 1;(source:Araport11)
AT4G09010.1	protein_coding	ascorbate peroxidase 4	Encodes a thylakoid lumen protein that was initially believed to act as a microsomal ascorbate peroxidase APX4 but to date, no evidence of enzymatic activity has been found.	ascorbate peroxidase 4;(source:Araport11)
AT4G09020.1	protein_coding	isoamylase 3	Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic &#945;-amylase AMY3 is upregulated. The mRNA is cell-to-cell mobile.	isoamylase 3;(source:Araport11)
AT4G09030.1	protein_coding	arabinogalactan protein 10	Encodes arabinogalactan protein (AGP10). The mRNA is cell-to-cell mobile.	arabinogalactan protein 10;(source:Araport11)
AT4G39370.1	protein_coding	ubiquitin-specific protease 27	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 27;(source:Araport11)
AT4G39460.1	protein_coding	S-adenosylmethionine carrier 1	Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway.	S-adenosylmethionine carrier 1;(source:Araport11)
AT4G39380.1	protein_coding			TSL-kinase interacting-like protein;(source:Araport11)
AT4G39470.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G39390.1	protein_coding	nucleotide sugar transporter-KT 1	Encodes a golgi localized  nucleotide sugar transporter.	nucleotide sugar transporter-KT 1;(source:Araport11)
AT4G39560.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G39480.1	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 9	member of CYP96A	cytochrome P450, family 96, subfamily A, polypeptide 9;(source:Araport11)
AT4G39400.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Encodes a plasma membrane localized leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. BRI1 ligand is brassinolide which binds at the extracellular domain. Binding results in phosphorylation of the kinase domain which activates the BRI1 protein leading to BR responses. Residue T-1049 and either S-1044 or T-1045 were essential for kinase function in vitro and normal BRI1 signaling in planta. The structure of BRI1 ligand-binding domain has been determined at 2.5A resolution.  Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome. BRI1 appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through its effects on FLC expression levels, as uncovered by double mutant analyses. This most likely occurs as a result of BRI1-dependent effects on histone acetylation, but not histone triMeH3K4 methylation, at the FLC locus. The mRNA is cell-to-cell mobile.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT4G39570.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G39410.1	protein_coding	WRKY DNA-binding protein 13	Encodes a member of the Group II-c WRKY Transcription Factor family that is involved in stem development and has been shown to  directly bind to the promoter of NST2. Mutants show a weak stem phenotype and show decreased expression of lignin-synthesis-related genes.	WRKY DNA-binding protein 13;(source:Araport11)
AT4G39580.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G39500.1	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 11		cytochrome P450, family 96, subfamily A, polypeptide 11;(source:Araport11)
AT4G39420.1	protein_coding			spatacsin carboxy-terminus protein;(source:Araport11)
AT4G39590.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G39510.1	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 12	member of CYP96A	cytochrome P450, family 96, subfamily A, polypeptide 12;(source:Araport11)
AT4G39600.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G39520.1	protein_coding	GTP-binding protein-related	Encodes a member of the DRG (developmentally regulated G-protein) family.  Has GTPase activity.	GTP-binding protein-like protein;(source:Araport11)
AT4G39610.1	protein_coding	Protein of unknown function, DUF617		MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT4G39530.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G39620.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G39540.1	protein_coding	shikimate kinase 2	Encodes a shikimate kinase. Its transcripts appear to be expressed in vegetative tissues and developing embryos. SK2 transcript levels rise in response to Phytophthora infestans spores. SK2 is believed to be localized to the chloroplast.	shikimate kinase 2;(source:Araport11)
AT4G39550.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G25170.1	protein_coding	Uncharacterised conserved protein (UCP012943)		Uncharacterized conserved protein (UCP012943);(source:Araport11)
AT4G25260.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT4G25180.1	protein_coding	RNA polymerase III RPC4		RNA polymerase III RPC4;(source:Araport11)
AT4G25270.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes OTP70, a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G25190.1	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT4G25280.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G25200.1	protein_coding	mitochondrion-localized small heat shock protein 23.6	AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrial	mitochondrion-localized small heat shock protein 23.6;(source:Araport11)
AT4G25290.1	protein_coding	DNA photolyases;DNA photolyases		DNA photolyase;(source:Araport11)
AT4G25210.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT4G25220.1	protein_coding	root hair specific 15	Encodes a member of the phosphate starvation-induced glycerol-3-phosphate permease gene family: AT3G47420(G3Pp1), AT4G25220(G3Pp2), AT1G30560(G3Pp3), AT4G17550(G3Pp4) and AT2G13100(G3Pp5).	root hair specific 15;(source:Araport11)
AT4G25300.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G25230.1	protein_coding	RPM1 interacting protein 2	RPM1 interacting protein 2, has a CUE domain which is sufficient for the interaction with RPM1.Positive regulator of RPM1 and PRS2 mediated hypersensitive response.Functions as ubiquitin ligase and binds to RPM1.	RPM1 interacting protein 2;(source:Araport11)
AT4G25310.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G25240.1	protein_coding	SKU5 similar 1	Encodes GPI-anchored SKU5-like protein. Acts redundantly with SKU5 and SKS1 in roots.	SKU5 similar 1;(source:Araport11)
AT4G25250.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein	PMEI4 pectin methyleseterase inhibitor. Expressed in roots.	Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT4G10210.1	protein_coding	Protein of Unknown Function (DUF239)		transmembrane protein, putative (DUF239);(source:Araport11)
AT4G10320.1	protein_coding	tRNA synthetase class I (I, L, M and V) family protein		tRNA synthetase class I (I, L, M and V) family protein;(source:Araport11)
AT4G10330.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G10340.1	protein_coding	light harvesting complex of photosystem II 5	photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus The mRNA is cell-to-cell mobile.	light harvesting complex of photosystem II 5;(source:Araport11)
AT4G10350.1	protein_coding	NAC domain containing protein 70	NAC domain protein. SMB, BRN1, and BRN2  act to regulate root cap maturation, in a partially redundant fashion.BRN1 and BRN2, control the cell wall maturation processes that are required to detach root cap layers from the root.	NAC domain containing protein 70;(source:Araport11)
AT4G10360.1	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT4G10370.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G19470.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G19550.1	protein_coding	zinc ion binding;transcription regulators		zinc ion binding / transcription regulator;(source:Araport11)
AT4G19480.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G19560.1	protein_coding	Cyclin family protein		Cyclin family protein;(source:Araport11)
AT4G19490.1	protein_coding	VPS54	Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system.	VPS54;(source:Araport11)
AT4G19570.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G19500.1	protein_coding	nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding		nucleoside-triphosphatase/transmembrane receptor/nucleotide binding/ATP binding protein;(source:Araport11)
AT4G19580.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT4G19510.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class)		Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT4G19590.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G19600.1	protein_coding	Cyclin family protein	Encodes a cyclin T partner CYCT1;4.  Plays important roles in infection with Cauliflower mosaic virus (CaMV). The mRNA is cell-to-cell mobile.	Cyclin family protein;(source:Araport11)
AT4G19520.1	protein_coding	disease resistance protein (TIR-NBS-LRR class) family		disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G19530.1	protein_coding	disease resistance protein (TIR-NBS-LRR class) family	Encodes a TIR-NB-LRR resistance protein.  Transient expression in tobacco induces cell death.	disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G19610.1	protein_coding	nucleotide binding;nucleic acid binding;RNA binding		nucleotide/nucleic acid binding protein;(source:Araport11)
AT4G19540.1	protein_coding	INDH1(iron-sulfur protein required for NADH dehydrogenase)	Encodes a iron-suflur protein required for NADH dehydrogenase.	INDH1(iron-sulfur protein required for NADH dehydrogenase);(source:Araport11)
AT4G19620.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G19630.1	protein_coding	winged-helix DNA-binding transcription factor family protein		winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT4G19640.1	protein_coding	Ras-related small GTP-binding family protein	Encodes Ara7.	Ras-related small GTP-binding family protein;(source:Araport11)
AT4G11390.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G11480.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 32	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 32;(source:Araport11)
AT4G11400.1	protein_coding	ARID/BRIGHT DNA-binding domain;ELM2 domain protein		ARID/BRIGHT DNA-binding , ELM2 domain and myb-like DNA-binding domain-containing protein;(source:Araport11)
AT4G11410.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G11490.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 33	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 33;(source:Araport11)
AT4G11420.1	protein_coding	eukaryotic translation initiation factor 3A	Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits.	eukaryotic translation initiation factor 3A;(source:Araport11)
AT4G11500.1	pseudogene			pseudogene of cysteine-rich RLK (RECEPTOR-like protein kinase) 34;(source:Araport11)
AT4G11430.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G11510.1	protein_coding	ralf-like 28	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 28;(source:Araport11)
AT4G11440.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G11450.1	protein_coding	Protein of unknown function (DUF3527)		bromo-adjacent domain protein, putative (DUF3527);(source:Araport11)
AT4G11530.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 34	Encodes a cysteine-rich receptor-like protein kinase. The mRNA is cell-to-cell mobile.	cysteine-rich RLK (RECEPTOR-like protein kinase) 34;(source:Araport11)
AT4G11460.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 30	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 30;(source:Araport11)
AT4G11540.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G11470.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 31	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 31;(source:Araport11)
AT4G11550.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G11560.1	protein_coding	bromo-adjacent homology (BAH) domain-containing protein		bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT4G11570.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	Encodes plastid localized protein involved in riboflavin biosynthesis. It dephosphorylates  5-amino-6-ribitylamino- 2,4(1H,3H) pyrimidinedione 5&#8242;-phosphate (ARPP) .	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT4G12990.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G12910.1	protein_coding	serine carboxypeptidase-like 20		serine carboxypeptidase-like 20;(source:Araport11)
AT4G13000.1	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein		AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT4G12920.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G13090.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 2		xyloglucan endotransglucosylase/hydrolase 2;(source:Araport11)
AT4G13010.1	protein_coding	Oxidoreductase, zinc-binding dehydrogenase family protein		Oxidoreductase, zinc-binding dehydrogenase family protein;(source:Araport11)
AT4G12930.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G13100.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G13020.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the cdc2+ family of protein kinases MHK.  Similar to the mak genes of rats.  mak encodes a protein kinase that may play a role in spermatogenesis.	Protein kinase superfamily protein;(source:Araport11)
AT4G12940.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G13110.1	protein_coding	BSD domain-containing protein		BSD domain-containing protein;(source:Araport11)
AT4G13030.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G12950.1	protein_coding	Fasciclin-like arabinogalactan family protein		Fasciclin-like arabinogalactan family protein;(source:Araport11)
AT4G13040.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the AP2/EREBP transcription factor family that has only one AP2 domain. It is a positive regulator of disease defense that functions upstream of SA accumulation.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G12960.1	protein_coding	Gamma interferon responsive lysosomal thiol (GILT) reductase family protein		Gamma interferon responsive lysosomal thiol (GILT) reductase family protein;(source:Araport11)
AT4G13050.1	protein_coding	Acyl-ACP thioesterase		Acyl-ACP thioesterase;(source:Araport11)
AT4G12970.1	protein_coding	stomagen	Encodes a cysteine-rich peptide, a secretory factor that is produced in the mesophyll cells and acts on the epidermis to increase stomatal formation.  Its mature form is a 45-aa peptide with three intramolecular disulfide bonds.  It is proposed that STOMAGEN increases stomatal number by competing with two negative regulators of stomatal density, EPF1 and EPF2. STOMAGEN has been shown to compete with EPF2 for binding to the ER and TMM receptor kinases.Binding of STOMAGEN to ER prevents induction of the EPF2-ER MAPK cascade. It's transcript levels change after inducing MUTE expression in a mute background.	stomagen;(source:Araport11)
AT4G13060.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT4G12980.1	protein_coding	Auxin-responsive family protein		Auxin-responsive family protein;(source:Araport11)
AT4G13070.1	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain protein		RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT4G13080.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 1		xyloglucan endotransglucosylase/hydrolase 1;(source:Araport11)
AT4G12900.1	protein_coding	Gamma interferon responsive lysosomal thiol (GILT) reductase family protein		Gamma interferon responsive lysosomal thiol (GILT) reductase family protein;(source:Araport11)
AT4G10980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.7e-44 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G10800.1	protein_coding			BTB/POZ domain protein;(source:Araport11)
AT4G10810.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G10820.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G10990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-190 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G10830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.1e-39 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G10910.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G10840.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G10920.1	protein_coding	transcriptional coactivator p15 (PC4) family protein (KELP)	Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein.  Both proteins are involved in gene activation during pathogen defense and plant development.	transcriptional coactivator p15 (PC4) family protein (KELP);(source:Araport11)
AT4G10850.1	protein_coding	Nodulin MtN3 family protein		Nodulin MtN3 family protein;(source:Araport11)
AT4G10930.1	protein_coding			RING/U-box protein;(source:Araport11)
AT4G10860.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G10870.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G10950.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT4G10880.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G10960.1	protein_coding	UDP-D-glucose/UDP-D-galactose 4-epimerase 5	Encodes a protein with UDP-D-glucose 4-epimerase activity.	UDP-D-glucose/UDP-D-galactose 4-epimerase 5;(source:Araport11)
AT4G10970.1	protein_coding		UAP56-interacting factor1, binds single stranded RNA and, along with UIEF2,,appears to play a role in nuclear export of RNA.	ribosome maturation factor;(source:Araport11)
AT4G28920.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT4G28930.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G28940.1	protein_coding	Phosphorylase superfamily protein		Phosphorylase superfamily protein;(source:Araport11)
AT4G28950.1	protein_coding	RHO-related protein from plants 9	A member of ROP GTPase gene family.	RHO-related protein from plants 9;(source:Araport11)
AT4G28960.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23930.1);(source:TAIR10)
AT4G28890.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G28970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.1e-76 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G28900.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.7e-236 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT4G28910.1	protein_coding	novel interactor of JAZ	Encodes a transcriptional repressor that functions in the jasmonic acid (JA) signalling pathway, root development, and has a key role in leaf development, likely due to the transcriptional regulation of CYCD3 expression.	Putative interactor of JAZ;(source:Araport11)
AT4G28320.1	protein_coding	Glycosyl hydrolase superfamily protein	Encodes a endo-beta-mannanase involved in seed germination.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT4G28240.1	protein_coding	Wound-responsive family protein	Member of the wound-induced polypeptide (WIP) family. Positively regulates plant resistance against Pst DC3000 by enhancing PTI responses.	Wound-responsive family protein;(source:Araport11)
AT4G28160.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G28250.1	protein_coding	expansin B3	putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin B3;(source:Araport11)
AT4G28170.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G28260.1	protein_coding			acyl-UDP-N-acetylglucosamine O-acyltransferase;(source:Araport11)
AT4G28180.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G28270.1	protein_coding	RING membrane-anchor 2	Encodes a RING finger E3 ubiquitin ligase. Binds and ubiquitinates ABP1 in vivo and in vitro.	RING membrane-anchor 2;(source:Araport11)
AT4G28190.1	protein_coding	Developmental regulator, ULTRAPETALA	Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy. Acts opposite to CLF which represses AG, but preventing deposition of CLF repressive methylation marks.ULT1 acts as an anti-repressor that counteracts EMF1 action through modulation of histone marks on target genes.	Developmental regulator, ULTRAPETALA;(source:Araport11)
AT4G28280.1	protein_coding	LORELEI-LIKE-GPI ANCHORED PROTEIN 3		LORELEI-LIKE-GPI ANCHORED PROTEIN 3;(source:Araport11)
AT4G28200.1	protein_coding			U3 small nucleolar RNA-associated-like protein;(source:Araport11)
AT4G28290.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G28210.1	protein_coding	embryo defective 1923		embryo defective 1923;(source:Araport11)
AT4G28300.1	protein_coding	Protein of unknown function (DUF1421)	Encodes a protein with 13.6% proline amino acids that is predicted to localize to the cell wall. The mRNA is cell-to-cell mobile.	formin-like protein (DUF1421);(source:Araport11)
AT4G28310.1	protein_coding			microtubule-associated protein;(source:Araport11)
AT4G28140.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. Regulated by heat shock.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G28220.1	protein_coding	NAD(P)H dehydrogenase B1		NAD(P)H dehydrogenase B1;(source:Araport11)
AT4G28150.1	protein_coding	Protein of unknown function (DUF789)		hypothetical protein (DUF789);(source:Araport11)
AT4G28230.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G32890.1	protein_coding	GATA transcription factor 9	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 9;(source:Araport11)
AT4G32900.1	protein_coding	Peptidyl-tRNA hydrolase II (PTH2) family protein		Peptidyl-tRNA hydrolase II (PTH2) family protein;(source:Araport11)
AT4G32980.1	protein_coding	homeobox gene 1	Encodes transcription factor involved in photomorphogenesis.  Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the  C24 accession. Most remarkably, ectopically expressed  ATH1 hardly had an effect on flowering time in the Col-0  and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.	homeobox protein ATH1;(source:Araport11)
AT4G32990.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G32910.1	protein_coding		SBB1 is a putative nucleoporin that is localized to the nuclear envelope. SBB1 was identified in a screen for supressors of BAK1, BKK1 mediated cell death.	nuclear pore complex Nup85-like protein;(source:Araport11)
AT4G32920.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G33000.1	protein_coding	calcineurin B-like protein 10	Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	calcineurin B-like protein 10;(source:Araport11)
AT4G32930.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G32940.1	protein_coding	gamma vacuolar processing enzyme	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.	gamma vacuolar processing enzyme;(source:Araport11)
AT4G32950.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT4G32960.1	protein_coding			BRISC/BRCA1-A complex protein;(source:Araport11)
AT4G32970.1	protein_coding			BRISC/BRCA1-A complex protein;(source:Araport11)
AT4G29950.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT4G29860.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a WD repeat protein with seven WD repeat motifs, predicted to function in protein-protein interaction. Mutations caused defects in both embryo and seedling development.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G29780.1	protein_coding		Expression of the gene is affected by multiple stresses. Knockout and overexpression lines show no obvious phenotypes.	nuclease;(source:Araport11)
AT4G29790.1	protein_coding			serine/arginine repetitive matrix protein;(source:Araport11)
AT4G29870.1	protein_coding	Oligosaccharyltransferase complex/magnesium transporter family protein		Oligosaccharyltransferase complex/magnesium transporter family protein;(source:Araport11)
AT4G29960.1	protein_coding		EBS7 encodes a plant specific, endoplasmic reticulum localized protein that is involved in endoplasmic reticulum-associated  degradation (ERAD). It interacts with the ERAD component AtHRD1a and may regulate HRD1a stability. Identified in a screen for supressors of a mutation in bri1 that causes bri1 to be retained in the ER. Loss of EBS7 function restores BR sensitivity in the bri1-9 mutant allele.	transmembrane protein;(source:Araport11)
AT4G29800.1	protein_coding	PATATIN-like protein 8		PATATIN-like protein 8;(source:Araport11)
AT4G29880.1	protein_coding	plant intracellular ras group-related LRR 7	Encodes PIRL7, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.	plant intracellular ras group-related LRR 7;(source:Araport11)
AT4G29970.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G29810.1	protein_coding	MAP kinase kinase 2	encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2.	MAP kinase kinase 2;(source:Araport11)
AT4G29890.1	protein_coding	choline monooxygenase, putative (CMO-like)		choline monooxygenase, putative (CMO-like);(source:Araport11)
AT4G29820.1	protein_coding	homolog of CFIM-25	Encodes a homolog of the protein CFI-25, a polyadenylation factor subunit.	homolog of CFIM-25;(source:Araport11)
AT4G29900.1	protein_coding	autoinhibited Ca(2+)-ATPase 10	one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.	autoinhibited Ca(2+)-ATPase 10;(source:Araport11)
AT4G29830.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	VIP3 protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase.  Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin. Also known as SKI8, a component of the SKI complex involved in exosome mediated RNA degredation. Member of PAF-C complex.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G29910.1	protein_coding	origin recognition complex protein 5	Origin Recognition Complex subunit 5. Involved in the initiation of DNA replication. Interacts strongly with all ORC subunits.	origin recognition complex protein 5;(source:Araport11)
AT4G29840.1	protein_coding	Pyridoxal-5'-phosphate-dependent enzyme family protein	threonine synthase	Pyridoxal-5-phosphate-dependent enzyme family protein;(source:Araport11)
AT4G29920.1	protein_coding	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein	Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance. Loss of function mutants show increased sensitivity to salt stress and drought.	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G29850.1	protein_coding	Eukaryotic protein of unknown function (DUF872)		transmembrane protein (DUF872);(source:Araport11)
AT4G29930.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G29940.1	protein_coding	pathogenesis related homeodomain protein  A	Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding.	pathogenesis related homeodomain protein A;(source:Araport11)
AT4G27450.1	protein_coding	Aluminium induced protein with YGL and LRDR motifs		aluminum induced protein with YGL and LRDR motifs;(source:Araport11)
AT4G27460.1	protein_coding	Cystathionine beta-synthase (CBS) family protein		Cystathionine beta-synthase (CBS) family protein;(source:Araport11)
AT4G27470.1	protein_coding	RING membrane-anchor 3	Encodes a RING finger E3 ubiquitin ligase.	RING membrane-anchor 3;(source:Araport11)
AT4G27480.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G27410.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	Encodes a NAC transcription factor induced in response to desiccation. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT4G27500.1	protein_coding	proton pump interactor 1	interacts with H+-ATPase, and regulates its activity The mRNA is cell-to-cell mobile.	proton pump interactor 1;(source:Araport11)
AT4G27490.1	protein_coding	3'-5'-exoribonuclease family protein		3-5-exoribonuclease family protein;(source:Araport11)
AT4G27420.1	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT4G27510.1	protein_coding			2-isopropylmalate synthase;(source:Araport11)
AT4G27430.1	protein_coding	COP1-interacting protein 7	Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression. The mRNA is cell-to-cell mobile.	COP1-interacting protein 7;(source:Araport11)
AT4G27440.1	protein_coding	protochlorophyllide oxidoreductase B	light-dependent NADPH:protochlorophyllide oxidoreductase B The mRNA is cell-to-cell mobile.	protochlorophyllide oxidoreductase B;(source:Araport11)
AT4G18610.1	protein_coding	Protein of unknown function (DUF640)		LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
AT4G18700.1	protein_coding	CBL-interacting protein kinase 12	Encodes CBL-interacting protein kinase 12 (CIPK12).	CBL-interacting protein kinase 12;(source:Araport11)
AT4G18620.1	protein_coding	PYR1-like 13	Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.	PYR1-like 13;(source:Araport11)
AT4G18710.1	protein_coding	Protein kinase superfamily protein	Encodes BIN2, a member of the ATSK (shaggy-like kinase) family. BIN2 functions in the cross-talk between auxin and brassinosteroid signaling pathways. BIN2 regulates root epidermal cell fate specification by phosphorylating EGL3 and TTG1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus.  KIB1 interacts with BIN2 blocking its interaction with substrates and promotes BIN2 degradation.	Protein kinase superfamily protein;(source:Araport11)
AT4G18630.1	protein_coding	Protein of unknown function (DUF688)		hypothetical protein (DUF688);(source:Araport11)
AT4G18800.1	protein_coding	RAB GTPase homolog A1D	Encodes RabA1d, a member of the RabA subfamily of small Rab GTPases.	RAB GTPase homolog A1D;(source:Araport11)
AT4G18720.1	protein_coding	Transcription factor IIS protein		Transcription factor IIS protein;(source:Araport11)
AT4G18640.1	protein_coding	Leucine-rich repeat protein kinase family protein	Required for root hair elongation during tip growth. The mRNA is cell-to-cell mobile.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G18810.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G18730.1	protein_coding	ribosomal protein L16B	encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expression in lateral root primordia is induced by auxin.	ribosomal protein L16B;(source:Araport11)
AT4G18650.1	protein_coding	transcription factor-related	A maternally expressed imprinted gene in the endosperm. It's expression is positively regulated by ROS1.	transcription factor-like protein;(source:Araport11)
AT4G18820.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT4G18740.1	protein_coding	Rho termination factor		Rho termination factor;(source:Araport11)
AT4G18660.1	protein_coding			delay of germination protein;(source:Araport11)
AT4G18750.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G18670.1	protein_coding	Leucine-rich repeat (LRR) family protein	Leucine rich extensin protein involved in cell wall biogenesis and organization. Interacts with several members of the RALF family of ligand peptides.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G18760.1	protein_coding	receptor like protein 51		receptor like protein 51;(source:Araport11)
AT4G18680.1	protein_coding			delay of germination protein;(source:Araport11)
AT4G18690.1	protein_coding			delay of germination protein;(source:Araport11)
AT4G18770.1	protein_coding	myb domain protein 98	MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects.	myb domain protein 98;(source:Araport11)
AT4G18780.1	protein_coding	cellulose synthase family protein	Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance.  Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.	cellulose synthase family protein;(source:Araport11)
AT4G18790.1	protein_coding	NRAMP metal ion transporter family protein	member of Nramp2 family	NRAMP metal ion transporter family protein;(source:Araport11)
AT4G34090.1	protein_coding			cyclin delta-3;(source:Araport11)
AT4G34100.1	protein_coding	RING/U-box superfamily protein	Encodes a protein involved in cuticular wax biosynthesis. Lines carrying a recessive mutation in this locus have reduced chain-length distribution, weakly glaucous stem surface, and has reduced fertility in early flowers, non-spreading floret, downward cupped leaves, leaf waxes nearly pure C24 and C26 acid.	RING/U-box superfamily protein;(source:Araport11)
AT4G34030.1	protein_coding	3-methylcrotonyl-CoA carboxylase	MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. The mRNA is cell-to-cell mobile.	3-methylcrotonyl-CoA carboxylase;(source:Araport11)
AT4G34110.1	protein_coding	poly(A) binding protein 2	Putative poly-A binding protein. Member of a gene family .Expressed in stele and root meristem and post-fertilization ovules.Member of the class II family of PABP proteins. The mRNA is cell-to-cell mobile.	poly(A) binding protein 2;(source:Araport11)
AT4G34040.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G34120.1	protein_coding	Cystathionine beta-synthase (CBS) family protein	Encodes a single cystathionine beta-Synthase domain-containing protein. Modulates development by regulating the thioredoxin system. The mRNA is cell-to-cell mobile.	Cystathionine beta-synthase (CBS) family protein;(source:Araport11)
AT4G34050.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Methyltransferase in the lignin biosynthetic pathway.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G34060.1	protein_coding	demeter-like protein 3	Encodes a protein with  5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.	demeter-like protein 3;(source:Araport11)
AT4G34140.1	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT4G34070.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT4G34150.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT4G34080.1	protein_coding	Plant protein of unknown function (DUF641)		myosin-4 protein (DUF641);(source:Araport11)
AT4G34160.1	protein_coding	CYCLIN D3;1	encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.	CYCLIN D3;(source:Araport11)
AT4G07390.1	protein_coding	Mannose-P-dolichol utilization defect 1 protein		Mannose-P-dolichol utilization defect 1 protein;(source:Araport11)
AT4G07400.1	protein_coding	VIER F-box proteine 3	Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2,and 4. When levels of all 4 genes are reduced plants show defects in growth and reduced levels of auxin response genes.	VIER F-box protein 3;(source:Araport11)
AT4G07410.1	protein_coding	Transducin family protein / WD-40 repeat family protein	Encodes a WD-40 protein expressed both during embryo development and postembryonically in the SAM and RAM that functions in the auxin pathway, integrating auxin signaling in the organization and maintenance of the SAM and RAM.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G07340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05090.1);(source:TAIR10)
AT4G07430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07310.1);(source:TAIR10)
AT4G07420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.5e-35 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G07350.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G07440.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G35260.1);(source:TAIR10)
AT4G07360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-295 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30550.1);(source:TAIR10)
AT4G07370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-75 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42430.1);(source:TAIR10)
AT4G07380.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G18350.1	protein_coding	nine-cis-epoxycarotenoid dioxygenase 2	Encodes 9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.	nine-cis-epoxycarotenoid dioxygenase 2;(source:Araport11)
AT4G18440.1	protein_coding	L-Aspartase-like family protein		L-Aspartase-like family protein;(source:Araport11)
AT4G18360.1	protein_coding	Aldolase-type TIM barrel family protein	Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT4G18450.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G18370.1	protein_coding	DEGP protease 5	Encodes DEG5.  Forms a hexamer with DEG8 in the thylakoid lumen.  Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII).	DEGP protease 5;(source:Araport11)
AT4G18540.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G18460.1	protein_coding	D-Tyr-tRNA(Tyr) deacylase family protein		D-Tyr-tRNA(Tyr) deacylase family protein;(source:Araport11)
AT4G18380.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G18550.1	protein_coding	alpha/beta-Hydrolases superfamily protein	DSEL is cytosolic acylhydrolase that shows prefential lipase activity against the sn-1 position of several classes of lipids, including 1,3-diacylglycerols and 1-monoacylglycerols. Overexpression of DSEL leads to increased peroxisome and oil body levels in  cotyledons and reduced beta-oxidation activity in seedlings.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G18470.1	protein_coding	negative regulator of systemic acquired resistance (SNI1)	Negative regulator of systemic acquired resistance (SAR), repressor of pathogenesis-related PR gene expression which is removed by NPR1 upon induction of SAR. Encodes leucine-rich nuclear protein. Conserved in plants, with putative orthologs found in several plant species. Many NPR1-dependent PR gene are specifically derepressed in the sni1 mutant. The structural similarity of SNI1 to Armadillo repeat proteins implies that SNI1 may form a scaffold for interaction with proteins that modulate transcription. Histone modification may be involved in SNI1-mediated repression of PR genes.SNI1 is the NSE6 subunit of the SMC5/6 complex. It can interact with and inhibit E2F transcription factors.	negative regulator of systemic acquired resistance (SNI1);(source:Araport11)
AT4G18390.1	protein_coding	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2		TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2;(source:Araport11)
AT4G18480.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. All four cysteine residues of the protein form two disulfide bonds (Cys102-Cys193 and Cys354-Cys396) under oxidized conditions but are fully reduced by reduction. It was suggested that the redox state of CHLI is regulated in vivo by the change of the redox environment in the chloroplasts probably via the Trx system.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G18400.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G18490.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G18410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.7e-30 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT4G18580.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G18500.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G18420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42810.1);(source:TAIR10)
AT4G18590.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT4G18510.1	protein_coding	CLAVATA3/ESR-related 2	CLE2, putative ligand, member of large gene family homologous to Clavata3	CLAVATA3/ESR-related 2;(source:Araport11)
AT4G18430.1	protein_coding	RAB GTPase homolog A1E		RAB GTPase homolog A1E;(source:Araport11)
AT4G18600.1	protein_coding	SCAR family protein	Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT4G18520.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes a PPR (pentatricopeptide repeat) protein PDM1/SEL1. Involved in RNA editing and splicing of plastid genes.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G18530.1	protein_coding	Protein of unknown function (DUF707)		lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707);(source:Araport11)
AT4G10090.1	protein_coding	elongator protein 6		elongator protein 6;(source:Araport11)
AT4G10100.1	protein_coding	co-factor for nitrate, reductase and xanthine dehydrogenase 7	molybdenum cofactor synthesis family protein, similar to Molybdenum cofactor synthesis protein 2 small subunit (Molybdopterin- synthase small subunit) (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) (Homo sapiens); contains TIGRFAM TIGR01682: molybdopterin converting factor, subunit 1; sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.	co-factor for nitrate, reductase and xanthine dehydrogenase 7;(source:Araport11)
AT4G10110.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G10120.1	protein_coding	Sucrose-phosphate synthase family protein	Encodes a protein with putative sucrose-phosphate synthase activity.	Sucrose-phosphate synthase family protein;(source:Araport11)
AT4G31740.1	protein_coding	Sec1/munc18-like (SM) proteins superfamily		Sec1/munc18-like (SM) proteins superfamily;(source:Araport11)
AT4G31750.1	protein_coding	HOPW1-1-interacting 2	Encodes HopW1-1-Interacting protein 2 (WIN2).  Interacts with the P. syringae effector HopW1-1.  WIN2 has protein phosphatase activity.  Modulates plant defenses against bacteria.  Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).	HOPW1-1-interacting 2;(source:Araport11)
AT4G31660.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT4G31670.1	protein_coding	ubiquitin-specific protease 18		ubiquitin-specific protease 18;(source:Araport11)
AT4G31760.1	protein_coding	Peroxidase superfamily protein		peroxidase superfamily protein;(source:Araport11)
AT4G31600.1	protein_coding	UDP-N-acetylglucosamine (UAA) transporter family	Encodes a Golgi-localized UDP–glucose/UDP–galactose transporter that affects lateral root emergence.	UDP-N-acetylglucosamine (UAA) transporter family;(source:Araport11)
AT4G31680.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT4G31770.1	protein_coding	debranching enzyme 1	Encodes a RNA lariat debranching enzyme required for embryogenesis.	debranching enzyme 1;(source:Araport11)
AT4G31610.1	protein_coding	Transcriptional factor B3 family protein	Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins	Transcriptional factor B3 family protein;(source:Araport11)
AT4G31690.1	protein_coding	Transcriptional factor B3 family protein		transcriptional factor B3 family protein;(source:Araport11)
AT4G31620.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT4G31700.1	protein_coding	ribosomal protein S6	Encodes a putative ribosomal protein S6 (rps6a). RPS6A and RPS6B are fully redundant and essential during gametogenesis.	ribosomal protein S6;(source:Araport11)
AT4G31630.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT4G31710.1	protein_coding	glutamate receptor 2.4	member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.4;(source:Araport11)
AT4G31640.1	protein_coding	transcriptional factor B3 family protein		transcriptional factor B3 family protein;(source:Araport11)
AT4G31720.1	protein_coding	TBP-associated factor II 15	Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15)	TBP-associated factor II 15;(source:Araport11)
AT4G31650.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT4G31730.1	protein_coding	glutamine dumper 1	Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion The mRNA is cell-to-cell mobile.	glutamine dumper 1;(source:Araport11)
AT4G01360.1	protein_coding		Encodes a protein related to BYPASS1 (BPS1).  Regulates production of mobile compound: bps signal.	BPS1-like protein;(source:Araport11)
AT4G01280.1	protein_coding	Homeodomain-like superfamily protein	RVE5 is one of eleven homologous MYB-like transcription factors in Arabidopsis and a member of the RVE8 clade. Plays a minor role in clock regulation.	Homeodomain-like superfamily protein;(source:Araport11)
AT4G01200.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT4G01120.1	protein_coding	G-box binding factor 2	bZIP (basic leucine zipper) transcription factor that binds to the G-box regulatory element found in many plant promoters.  GBF2 nuclear localization is increased by blue light	G-box binding factor 2;(source:Araport11)
AT4G01370.1	protein_coding	MAP kinase 4	Encodes a nuclear and cytoplasmically localized  MAP kinase involved in mediating responses to pathogens.  Its substrates include MKS1 and probably MAP65-1.The MAP65-1 interaction is involved in mediating cortical microtuble organization. Required for male-specific meiotic cytokinesis. The mRNA is cell-to-cell mobile.	MAP kinase 4;(source:Araport11)
AT4G01290.1	protein_coding		Protein with evolutionarily conserved eIF4E-binding motif in its N-terminal domain that can form mRNA cap?binding complexes and has the potential for regulating gene expression as a translation factor associated plant-specific cell cycle regulator.	chorismate synthase;(source:Araport11)
AT4G01210.1	protein_coding	glycosyl transferase family 1 protein		glycosyl transferase family 1 protein;(source:Araport11)
AT4G01380.1	protein_coding	plastocyanin-like domain-containing protein		plastocyanin-like domain-containing protein;(source:Araport11)
AT4G01220.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein	Encodes MGP4 (MALE GAMETOPHYTE DEFECTIVE 4), a rhamnogalacturonan II xylosyltransferase important for growth of pollen tubes and roots.	Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT4G01390.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT4G01310.1	protein_coding	Ribosomal L5P family protein		Ribosomal L5P family protein;(source:Araport11)
AT4G01320.1	protein_coding	Peptidase family M48 family protein	CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum.	Peptidase family M48 family protein;(source:Araport11)
AT4G01040.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT4G01130.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT4G01050.1	protein_coding	thylakoid rhodanese-like	hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain. Required  for anchoring the FNR flavoenzyme to the thylakoid membranes  and sustaining high efficiency photosynthetic linear electron flow. The mRNA is cell-to-cell mobile.	thylakoid rhodanese-like protein;(source:Araport11)
AT4G01140.1	protein_coding	Protein of unknown function (DUF1191)		transmembrane protein, putative (DUF1191);(source:Araport11)
AT4G01060.1	protein_coding	CAPRICE-like MYB3	Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.	CAPRICE-like MYB3;(source:Araport11)
AT4G01230.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT4G01150.1	protein_coding			CURVATURE THYLAKOID 1A-like protein;(source:Araport11)
AT4G01070.1	protein_coding	UDP-Glycosyltransferase superfamily protein	the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this gene for metabolizing chloroaniline but significantly less for chlorophenole. The glucosyltransferase preferred UDP-xylose over UDP-glucose indicating its (additional) functioning as a xylosyltransferase in planta	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G01240.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G01160.1	protein_coding	BTB/POZ/Kelch-associated protein	Encodes a member of LRB BTB family. It does not appear to participate in red light responses like LRB1 and LRB2. NO-interacting protein.	BTB/POZ/Kelch-associated protein;(source:Araport11)
AT4G01330.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G01250.1	protein_coding	WRKY family transcription factor	AtWRKY22 is a member of WRKY Transcription Factor; Group II-e.  It is involved in regulation of dark induced leaf senescence.	WRKY family transcription factor;(source:Araport11)
AT4G01080.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 26	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. Functions as a mannan O-acetyltransferase, catalyzing the 2-O and 3-O-monoacetylation of mannosyl residues A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 26;(source:Araport11)
AT4G01340.1	protein_coding	CHP-rich zinc finger protein-related		CHP-rich zinc finger protein-like protein;(source:Araport11)
AT4G01090.1	protein_coding	Protein of unknown function (DUF3133)	Hypothetical protein; participates in wound-induced lateral root development.	hypothetical protein (DUF3133);(source:Araport11)
AT4G01170.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G01260.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT4G01100.1	protein_coding	adenine nucleotide transporter 1	Adenine nucleotide transporter. Located in mitochondrion. Expressed in a broad range of tissues, but predominantly in root tips. Loss of function mutants exhibit reduced root growth and respiration.	adenine nucleotide transporter 1;(source:Araport11)
AT4G01180.1	protein_coding	XH/XS domain-containing protein		XH/XS domain-containing protein;(source:Araport11)
AT4G01350.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G01270.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G01110.1	protein_coding			late embryogenesis abundant hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G01190.1	protein_coding	phosphatidylinositol phosphate kinase 10	Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. Preferentially phosphorylates PtdIns4P. Expressed in flowers and inflorescence stems.	phosphatidylinositol phosphate kinase 10;(source:Araport11)
AT4G01400.1	protein_coding		Pentatricopeptide Repeat Protein involved in splicing of nad4, nad 5, nad 1 and nad2 introns which affects biogenesis of the respiratory complex I.	oligomeric golgi complex subunit-like protein;(source:Araport11)
AT4G01410.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT4G01420.1	protein_coding	calcineurin B-like protein 5	Encodes calcineurin B-like protein 5 (CBL5). Overexpression confers tolerance to drought and salt stress.	calcineurin B-like protein 5;(source:Araport11)
AT4G01430.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	Encodes a plasma membrane-localized amino acid transporter likely involved in amino acid export in the developing seed.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G01440.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G01000.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT4G01010.1	protein_coding	cyclic nucleotide-gated channel 13	member of Cyclic nucleotide gated channel family	cyclic nucleotide-gated channel 13;(source:Araport11)
AT4G01020.1	protein_coding	helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related		helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT4G01030.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT4G31540.1	protein_coding	exocyst subunit exo70 family protein G1	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein G1;(source:Araport11)
AT4G31460.1	protein_coding	Ribosomal L28 family		Ribosomal L28 family;(source:Araport11)
AT4G31550.1	protein_coding	WRKY DNA-binding protein 11	member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.	WRKY DNA-binding protein 11;(source:Araport11)
AT4G31470.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT4G31560.1	protein_coding	high chlorophyll fluorescence 153	Encodes HCF153, a 15-KDa protein involved in the biogenesis of the cytochrome b(6)f complex.  Associated with the thylakoid membrane.	high chlorophyll fluorescence 153;(source:Araport11)
AT4G31480.1	protein_coding	Coatomer, beta subunit		Coatomer, beta subunit;(source:Araport11)
AT4G31490.1	protein_coding	Coatomer, beta subunit		Coatomer, beta subunit;(source:Araport11)
AT4G31500.1	protein_coding	cytochrome P450, family 83, subfamily B, polypeptide 1	Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates.  Is required for phytochrome signal transduction in red light.   Mutation confers auxin overproduction.	cytochrome P450, family 83, subfamily B, polypeptide 1;(source:Araport11)
AT4G31510.1	protein_coding			major centromere autoantigen B-like protein;(source:Araport11)
AT4G31520.1	protein_coding	SDA1 family protein		SDA1 family protein;(source:Araport11)
AT4G31440.1	protein_coding			transcriptional regulator of RNA polII, SAGA, subunit;(source:Araport11)
AT4G31450.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G31530.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G35790.1	protein_coding	phospholipase D delta	Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.	phospholipase D delta;(source:Araport11)
AT4G35800.1	protein_coding	RNA polymerase II large subunit	Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit.	RNA polymerase II large subunit;(source:Araport11)
AT4G35810.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G35820.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G35830.1	protein_coding	aconitase 1	Encodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate, indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. This enzyme can also specifically bind to the 5' UTR of CSD2 in vitro.	aconitase 1;(source:Araport11)
AT4G35840.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G35850.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G35860.1	protein_coding	GTP-binding 2	GTP-binding protein ATGB2	GTP-binding 2;(source:Araport11)
AT4G35870.1	protein_coding	early-responsive to dehydration stress protein (ERD4)		early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT4G03120.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT4G03210.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 9	encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.	xyloglucan endotransglucosylase/hydrolase 9;(source:Araport11)
AT4G03130.1	protein_coding	BRCT domain-containing DNA repair protein		BRCT domain-containing DNA repair protein;(source:Araport11)
AT4G03220.1	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT4G03140.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G03310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.4e-90 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G03230.1	protein_coding	S-locus lectin protein kinase family protein		G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT4G03150.1	protein_coding			plant/protein;(source:Araport11)
AT4G03320.1	protein_coding	translocon at the inner envelope membrane of chloroplasts 20-IV	Encodes a component of the TIC (translocon at the inner envelope membrane of chloroplasts) protein translocation machinery mediating the protein translocation across the inner envelope of plastids. The Arabidopsis genome encodes four Tic20 homologous proteins, AT1G04940(Tic20-I), AT2G47840(Tic20-II), AT4G03320(Tic20-IV) and AT5G55710(Tic20-V).	translocon at the inner envelope membrane of chloroplasts 20-IV;(source:Araport11)
AT4G03240.1	protein_coding	frataxin homolog	Encodes AtFH, a frataxin homolog.  Frataxin is required for the biogenesis of mitochondria in different organisms.  AtFH knock-out mutants are lethal.  Required for full activity of mitochondrial Fe-S proteins.  Deficiency of AtFH induces oxidative stress.	frataxin-like protein;(source:Araport11)
AT4G03160.1	protein_coding			B3 domain protein;(source:Araport11)
AT4G03330.1	protein_coding	syntaxin of plants 123	member of SYP12 Gene Family	syntaxin of plants 123;(source:Araport11)
AT4G03250.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT4G03170.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT4G03340.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G03260.1	protein_coding	Outer arm dynein light chain 1 protein	MASP1 overexpression promotes growth during drought and promotes microtubule stability and recovery after stress as well as microtubule bundling.MASP1 growth promotion and microtubule stabilization activities are dependent upon serine 670 phosphorylation. MASP1 binds microtubules;this activity is not affected by MASP1 phosphorylation status.MASP1 protein levels are induced by drought post-transcriptionally.	Outer arm dynein light chain 1 protein;(source:Araport11)
AT4G03180.1	protein_coding			rRNA-processing protein;(source:Araport11)
AT4G03350.1	protein_coding	ubiquitin family protein	EVE1 encodes a a novel ubiquitin family protein involved in the transition from the vegetative to the reproductive phase of growth.	ubiquitin family protein;(source:Araport11)
AT4G03270.1	protein_coding	Cyclin D6;1	Cyclin D6, involved in cortex/endodermis asymmetric stem cell division.	Cyclin D6;(source:Araport11)
AT4G03190.1	protein_coding	GRR1-like protein 1	Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.	GRR1-like protein 1;(source:Araport11)
AT4G03360.1	protein_coding	Ubiquitin family protein		Ubiquitin family protein;(source:Araport11)
AT4G03280.1	protein_coding	photosynthetic electron transfer C	Encodes the Rieske FeS center of cytochrome b6f complex. Gene is expressed in shoot but not in root. Mutant has reduced electron transport at saturating light intensities and Q-cycle activity is hypersensitive to acidification of the thylakoid lumen. The mRNA is cell-to-cell mobile.	photosynthetic electron transfer C;(source:Araport11)
AT4G03200.1	protein_coding	catalytics		catalytics;(source:Araport11)
AT4G03370.1	protein_coding	Ubiquitin family protein		Ubiquitin family protein;(source:Araport11)
AT4G03290.1	protein_coding	EF hand calcium-binding protein family		EF hand calcium-binding protein family;(source:Araport11)
AT4G03380.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G03300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1);(source:TAIR10)
AT4G03390.1	protein_coding	STRUBBELIG-receptor family 3		STRUBBELIG-receptor family 3;(source:Araport11)
AT4G32660.1	protein_coding	Protein kinase superfamily protein	Encodes protein kinase AME3.	Protein kinase superfamily protein;(source:Araport11)
AT4G32580.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT4G32670.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT4G32590.1	protein_coding	2Fe-2S ferredoxin-like superfamily protein		2Fe-2S ferredoxin-like superfamily protein;(source:Araport11)
AT4G32760.1	protein_coding	ENTH/VHS/GAT family protein		ENTH/VHS/GAT family protein;(source:Araport11)
AT4G32680.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G32600.1	protein_coding	RING/U-box superfamily protein		C3H4 type zinc finger protein;(source:Araport11)
AT4G32770.1	protein_coding	tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)	Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature.  Plays a role in the adaptation to low temperature stress, notably phloem loading.	tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1);(source:Araport11)
AT4G32690.1	protein_coding	hemoglobin 3	Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi.  The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold.  This type of Hb is not found in animals or yeast.	hemoglobin 3;(source:Araport11)
AT4G32780.1	protein_coding	phosphoinositide binding	FORKED-LIKE family member, part of Group 2 (Group 1 consists of FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	phosphoinositide binding protein;(source:Araport11)
AT4G32610.1	protein_coding	copper ion binding		copper ion binding protein;(source:Araport11)
AT4G32620.1	protein_coding	Enhancer of polycomb-like transcription factor protein	Polycomb related protein that is part of a protein complex involved in histone deacetylation and heterochromatin silencing.	Enhancer of polycomb-like transcription factor protein;(source:Araport11)
AT4G32790.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT4G32710.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT4G32630.1	protein_coding	ArfGap/RecO-like zinc finger domain-containing protein		ArfGap/RecO-like zinc finger domain-containing protein;(source:Araport11)
AT4G32720.1	protein_coding	La protein 1	Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins.  Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity.  Has RNA binding activity.  Required for normal ribosome biogenesis and embryogenesis.	La protein 1;(source:Araport11)
AT4G32640.1	protein_coding	Sec23/Sec24 protein transport family protein		Sec23/Sec24 protein transport family protein;(source:Araport11)
AT4G32730.1	protein_coding	Homeodomain-like protein	Encodes a putative c-myb-like transcription factor with three MYB repeats.	Homeodomain-like protein;(source:Araport11)
AT4G32650.1	protein_coding	potassium channel in Arabidopsis thaliana 3	Encodes KAT3, a member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. The Shaker family K+ ion channels include five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inwardly rectifying conductance): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).	potassium channel protein;(source:Araport11)
AT4G32750.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G04550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.9e-10 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT4G04560.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.0e-94 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT4G04570.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 40	Encodes a cysteine-rich receptor-like protein kinase. The mRNA is cell-to-cell mobile.	cysteine-rich RLK (RECEPTOR-like protein kinase) 40;(source:Araport11)
AT4G04580.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT4G04590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 5.3e-36 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G04600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G04610.1	protein_coding	APS reductase 1	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. The mRNA is cell-to-cell mobile.	APS reductase 1;(source:Araport11)
AT4G04620.1	protein_coding	Ubiquitin-like superfamily protein	Autophagy protein.	Ubiquitin-like superfamily protein;(source:Araport11)
AT4G04630.1	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT4G33240.1	protein_coding	1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases	Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain.  fab1a/fab1b pollen grains not viable and have defective vacuolar organization. FAB1A and FAB1B complement the enlarged vacuolar phenotype of the fission yeast ste12delta mutant.	1-phosphatidylinositol-3-phosphate 5-kinase FAB1A;(source:Araport11)
AT4G33160.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G33080.1	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein		AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT4G33170.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G33090.1	protein_coding	aminopeptidase M1	encodes an aminopeptidase, a ortholog of mouse microsomal AP (EC 3.4.11.2).	aminopeptidase M1;(source:Araport11)
AT4G33180.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G33100.1	protein_coding			protein phosphatase;(source:Araport11)
AT4G33110.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G33200.1	protein_coding	myosin, putative	member of Myosin-like proteins	myosin;(source:Araport11)
AT4G33120.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G33210.1	protein_coding	F-box family protein	Encodes SLOMO (SLOW MOTION), a F-box protein required for auxin homeostasis and normal timing of lateral organ initiation at the shoot meristem.	F-box family protein;(source:Araport11)
AT4G33130.1	protein_coding			rho GTPase-activating protein;(source:Araport11)
AT4G33220.1	protein_coding	pectin methylesterase 44		pectin methylesterase 44;(source:Araport11)
AT4G33140.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT4G33230.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT4G33150.1	protein_coding	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme	This is a splice variant of the LKR/SDH locus. It encodes a bifunctional polypeptide lysine-ketoglutarate reductase and saccharopine dehydrogenase involved in lysine degradation. There is another splice variant that encodes a mono saccharopine dehydrogenase protein. Gene expression is induced by abscisic acid, jasmonate, and under sucrose starvation.	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme;(source:Araport11)
AT4G00240.1	protein_coding	phospholipase D beta 2	member of C2-PLD subfamily	phospholipase D beta 2;(source:Araport11)
AT4G00250.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator	STKL2 is a DUF domain containing DNA binding protein that may be involved in mediating certain glucose responses. Binds to promoter of PGR, a putative plasma membrane glucose response regulator.	DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT4G00330.1	protein_coding	calmodulin-binding receptor-like cytoplasmic kinase 2	high overall homology to CRCK1	calmodulin-binding receptor-like cytoplasmic kinase 2;(source:Araport11)
AT4G00260.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT4G00340.1	protein_coding	receptor-like protein kinase 4	Encodes a receptor-like protein kinase that is expressed in roots.	receptor-like protein kinase 4;(source:Araport11)
AT4G00430.1	protein_coding	plasma membrane intrinsic protein 1;4	a member of the plasma membrane intrinsic protein subfamily PIP1.	plasma membrane intrinsic protein 1;(source:Araport11)
AT4G00270.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator	GeBP is a non canonical, nuclear localized leucine zipper transcription factor that binds G-elements.It is strongly expressed in the vegetative meristem and leaf primordium. It regulates genes down stream of a number of signaling pathways including hormone and defense responses.	DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT4G00350.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT4G00440.1	protein_coding	Protein of unknown function (DUF3741)		GPI-anchored adhesin-like protein, putative (DUF3741);(source:Araport11)
AT4G00280.1	protein_coding			ER protein carbohydrate-binding protein;(source:Araport11)
AT4G00360.1	protein_coding	cytochrome P450, family 86, subfamily A, polypeptide 2	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.	cytochrome P450, family 86, subfamily A, polypeptide 2;(source:Araport11)
AT4G00450.1	protein_coding	RNA polymerase II transcription mediators	Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.	RNA polymerase II transcription mediator;(source:Araport11)
AT4G00290.1	protein_coding	Mechanosensitive ion channel protein	Encodes a non-selective mechanosensitive ion channel localized to the inner mitochondrial membrane.	Mechanosensitive ion channel protein;(source:Araport11)
AT4G00370.1	protein_coding	Major facilitator superfamily protein	Encodes an inorganic phosphate transporter (PHT4;4) that can transport ascorbate and is located in the chloroplast envelope membrane.  It has been shown to play a role in the xanthophyll cycle during photosynthesis and may be required for tolerance to strong light stress.	Major facilitator superfamily protein;(source:Araport11)
AT4G00460.1	protein_coding	RHO guanyl-nucleotide exchange factor 3	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 3;(source:Araport11)
AT4G00300.1	protein_coding	fringe-related protein	AT4G00300 has been split into two loci based on new cDNA evidence provided by Aleksander Riise Hansen of University of Copenhagen: AT4G00300.2 becomes AT4G00300.1; a new locus AT4G00295 is created. See comments field for AT4G00295 annotation.	receptor-like kinase;(source:Araport11)
AT4G00380.1	protein_coding	XH/XS domain-containing protein	Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).	XH/XS domain-containing protein;(source:Araport11)
AT4G00310.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT4G00390.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT4G00320.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G00400.1	protein_coding	glycerol-3-phosphate acyltransferase 8	bifunctional sn-glycerol-3-phosphate 2-O-acyltransferase/phosphatase.  Involved in cutin assembly and is functionally redundant with GPAT4.	glycerol-3-phosphate acyltransferase 8;(source:Araport11)
AT4G00420.1	protein_coding	Double-stranded RNA-binding domain (DsRBD)-containing protein		Double-stranded RNA-binding domain (DsRBD)-containing protein;(source:Araport11)
AT4G07810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.1e-230 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G07820.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT4G07830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.3e-159 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT4G07840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT4G07770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.7e-12 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G07850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.2e-135 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G07780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.1e-225 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein;(source:TAIR10)
AT4G07800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1);(source:TAIR10)
AT4G31110.1	protein_coding	Wall-associated kinase family protein		Wall-associated kinase family protein;(source:Araport11)
AT4G31120.1	protein_coding	SHK1 binding protein 1	Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.	SHK1 binding protein 1;(source:Araport11)
AT4G31130.1	protein_coding	Protein of unknown function (DUF1218)		keratin-associated protein (DUF1218);(source:Araport11)
AT4G31140.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT4G31150.1	protein_coding	endonuclease V family protein		endonuclease V family protein;(source:Araport11)
AT4G31160.1	protein_coding	DDB1-CUL4 associated factor 1	Encodes a DCAF/DWD protein capable of interacting with DDB1 and associating with CUL4, likely as part of a nuclear ubiquitin ligase complex. DCAF1 appears to be required for plant embryogenesis and to affect several other developmental processes including leaf, shoot, and flower development.	DDB1-CUL4 associated factor 1;(source:Araport11)
AT4G31180.1	protein_coding	Class II aminoacyl-tRNA and biotin synthetases superfamily protein	The IBI1 gene encodes an aspartyl tRNA synthetase (AspRS). In addition, the IBI1 protein acts as a receptor protein of the chemical plant defence activator beta-aminobutyric acid (BABA). Binding of IBI1 to the active R-enantiomer of BABA primes non-canonical defence activity of the AspRS protein against pathogen attack.	Class II aminoacyl-tRNA and biotin synthetases superfamily protein;(source:Araport11)
AT4G31170.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G31100.1	protein_coding	wall-associated kinase, putative		wall-associated kinase;(source:Araport11)
AT4G37360.1	protein_coding	cytochrome P450, family 81, subfamily D, polypeptide 2	member of CYP81D	cytochrome P450, family 81, subfamily D, polypeptide 2;(source:Araport11)
AT4G37450.1	protein_coding	arabinogalactan protein  18	AGP18 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP19, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers and is active in the regulation of the selection and survival of megaspores.	arabinogalactan protein 18;(source:Araport11)
AT4G37370.1	protein_coding	cytochrome P450, family 81, subfamily D, polypeptide 8	member of CYP81D	cytochrome P450, family 81, subfamily D, polypeptide 8;(source:Araport11)
AT4G37460.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a  tetratricopeptide repeat domain containing protein that shows sequence similarity to those of transcriptional repressors in other organisms. Involved in mediating effector-triggered immunity.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G37380.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G37470.1	protein_coding	alpha/beta-Hydrolases superfamily protein	HTL belonging to the alpha/beta fold hydrolase superfamily. Mutant and over-expression studies indicates its involvement in seedling de-etiolation process.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G37390.1	protein_coding	Auxin-responsive GH3 family protein	Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. May function as a negative component in auxin signaling by regulating auxin activity.	Auxin-responsive GH3 family protein;(source:Araport11)
AT4G37480.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G37400.1	protein_coding	cytochrome P450, family 81, subfamily F, polypeptide 3	member of CYP81F	cytochrome P450, family 81, subfamily F, polypeptide 3;(source:Araport11)
AT4G37490.1	protein_coding	CYCLIN B1;1	Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.	CYCLIN B1;(source:Araport11)
AT4G37410.1	protein_coding	cytochrome P450, family 81, subfamily F, polypeptide 4	member of CYP81F The mRNA is cell-to-cell mobile.	cytochrome P450, family 81, subfamily F, polypeptide 4;(source:Araport11)
AT4G37500.1	protein_coding	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein		Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein;(source:Araport11)
AT4G37420.1	protein_coding	Domain of unknown function (DUF23)		glycosyltransferase family protein (DUF23);(source:Araport11)
AT4G37510.1	protein_coding	Ribonuclease III family protein		Ribonuclease III family protein;(source:Araport11)
AT4G37430.1	protein_coding	cytochrome P450, family 91, subfamily A, polypeptide 2	Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily.	cytochrome P450, family 91, subfamily A, polypeptide 2;(source:Araport11)
AT4G37440.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G30080.1	protein_coding	auxin response factor 16	Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus.	auxin response factor 16;(source:Araport11)
AT4G30090.1	protein_coding			golgin family A protein;(source:Araport11)
AT4G30100.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G30020.1	protein_coding	PA-domain containing subtilase family protein		PA-domain containing subtilase family protein;(source:Araport11)
AT4G30110.1	protein_coding	heavy metal atpase 2	encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc	heavy metal atpase 2;(source:Araport11)
AT4G30030.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G30120.1	protein_coding	heavy metal atpase 3	encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc	heavy metal atpase 3;(source:Araport11)
AT4G30040.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G30050.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G30060.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G30070.1	protein_coding	low-molecular-weight cysteine-rich 59	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	low-molecular-weight cysteine-rich 59;(source:Araport11)
AT4G05590.1	protein_coding		Encodes NRGA1, a putative mitochondrial pyruvate carrier that mediates ABA regulation of guard cell ion channels and drought stress responses.	pyruvate carrier-like protein;(source:Araport11)
AT4G05600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.6e-10 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G05610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, putative retrotransposon-like orf - Arabidopsis thaliana,PID:g4309868;(source:TAIR10)
AT4G31050.1	protein_coding	Biotin/lipoate A/B protein ligase family		Biotin/lipoate A/B protein ligase family;(source:Araport11)
AT4G30970.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G31060.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. A maternally expressed imprinted gene.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G30980.1	protein_coding	LJRHL1-like 2	Encodes a basic helix-loop-helix (bHLH) protein that regulates root hair and sperm cell development.  One of the three Arabidopsis homologs of the Lotus japonicus ROOTHAIRLESS1 (LjRHL1) gene: At2g24260 (AtLRL1), At4g30980 (AtLRL2), and At5g58010 (AtLRL3).	LJRHL1-like 2;(source:Araport11)
AT4G31070.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		PPR superfamily protein;(source:Araport11)
AT4G31080.1	protein_coding	Protein of unknown function (DUF2296)	Encodes one of two LUNAPARK proteins in Arabidopsis.  Both LNPA and LNPB are predominantly distributed throughout the ER, but not preferentially localized at the three-way junctions. Mutation of both LNPA and LNPB together caused the cortical ER to develop poor ER cisternae and a less dense tubular network.	integral membrane metal-binding family protein (DUF2296);(source:Araport11)
AT4G30890.1	protein_coding	ubiquitin-specific protease 24	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 24;(source:Araport11)
AT4G30900.1	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT4G30990.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G30910.1	protein_coding	Cytosol aminopeptidase family protein		Cytosol aminopeptidase family protein;(source:Araport11)
AT4G31000.1	protein_coding	Calmodulin-binding protein		Calmodulin-binding protein;(source:Araport11)
AT4G30920.1	protein_coding	Cytosol aminopeptidase family protein	Encodes LAP2, an aminopeptidase playing key roles in senescence, stress response and amino acid turnover.	Cytosol aminopeptidase family protein;(source:Araport11)
AT4G31010.1	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	Encodes a nuclear CRM protein required for the processing of many mitochondrial introns. It is involved in the biogenesis of respiratory complexes I and IV in Arabidopsis.	RNA-binding CRS1 / YhbY (CRM) domain-containing protein;(source:Araport11)
AT4G30930.1	protein_coding	Ribosomal protein L21	Encodes a ribosomal RPL21M protein that is localized to the mitochondrion and is involved in karyogamy during female gametophyte development and fertilization. Mutants display defects in both male and female gametophyte development (i.e.collapsed pollen and female gametophytes with unfused central cells).	Ribosomal protein L21;(source:Araport11)
AT4G31020.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G30940.1	protein_coding	BTB/POZ domain with WD40/YVTN repeat-like protein		BTB/POZ domain with WD40/YVTN repeat-like protein;(source:Araport11)
AT4G31030.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT4G30950.1	protein_coding	fatty acid desaturase 6	Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to susceptibility to photoinhibition.	fatty acid desaturase 6;(source:Araport11)
AT4G31040.1	protein_coding	CemA-like proton extrusion protein-related		CemA-like proton extrusion protein-like protein;(source:Araport11)
AT4G30880.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G30960.1	protein_coding	SOS3-interacting protein 3	Encodes CBL-interacting protein kinase 6 (CIPK6). Required for development and salt tolerance. The mRNA is cell-to-cell mobile.	SOS3-interacting protein 3;(source:Araport11)
AT4G24860.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G24800.1	protein_coding	MA3 domain-containing protein		MA3 domain-containing protein;(source:Araport11)
AT4G24810.1	protein_coding	Protein kinase superfamily protein	similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)	Protein kinase superfamily protein;(source:Araport11)
AT4G24820.1	protein_coding	26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain		26S proteasome regulatory subunit Rpn7;(source:Araport11)
AT4G24830.1	protein_coding	arginosuccinate synthase family		arginosuccinate synthase family;(source:Araport11)
AT4G24840.1	protein_coding			oligomeric golgi complex subunit-like protein;(source:Araport11)
AT4G00020.1	protein_coding	BREAST CANCER 2 like 2A	Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development and defense gene transcription during plant immune responses.	BREAST CANCER 2 like 2A;(source:Araport11)
AT4G00110.1	protein_coding	UDP-D-glucuronate 4-epimerase 3	Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.	UDP-D-glucuronate 4-epimerase 3;(source:Araport11)
AT4G00030.1	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT4G00120.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G00040.1	protein_coding	Chalcone and stilbene synthase family protein		Chalcone and stilbene synthase family protein;(source:Araport11)
AT4G00210.1	protein_coding	LOB domain-containing protein 31		LOB domain-containing protein 31;(source:Araport11)
AT4G00130.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT4G00050.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G00220.1	protein_coding	Lateral organ boundaries (LOB) domain family protein	Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves. A maternally expressed imprinted gene.	Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT4G00140.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT4G00060.1	protein_coding	Nucleotidyltransferase family protein		Nucleotidyltransferase family protein;(source:Araport11)
AT4G00230.1	protein_coding	xylem serine peptidase 1		xylem serine peptidase 1;(source:Araport11)
AT4G00150.1	protein_coding	GRAS family transcription factor	Belongs to one of the LOM (LOST MERISTEMS) genes: AT2G45160 (LOM1), AT3G60630 (LOM2) and AT4G00150 (LOM3). LOM1 and LOM2 promote cell differentiation at the periphery of shoot meristems and help to maintain their polar organization.	GRAS family transcription factor;(source:Araport11)
AT4G00070.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G00160.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT4G00080.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT4G00170.1	protein_coding	Plant VAMP (vesicle-associated membrane protein) family protein		Plant VAMP (vesicle-associated membrane protein) family protein;(source:Araport11)
AT4G00090.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G00180.1	protein_coding	Plant-specific transcription factor YABBY family protein	YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.	Plant-specific transcription factor YABBY family protein;(source:Araport11)
AT4G00100.1	protein_coding	ribosomal protein S13A	Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development The mRNA is cell-to-cell mobile.	ribosomal protein S13A;(source:Araport11)
AT4G00190.1	protein_coding	pectin methylesterase 38		pectin methylesterase 38;(source:Araport11)
AT4G00200.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT4G00720.1	protein_coding	shaggy-like protein kinase 32	Encodes ASKtheta, a group III Arabidopsis GSK3/shaggy-like kinase. Functions in the brassinosteroid signalling pathway.	shaggy-like protein kinase 32;(source:Araport11)
AT4G00550.1	protein_coding	digalactosyl diacylglycerol deficient 2	encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.	digalactosyl diacylglycerol deficient 2;(source:Araport11)
AT4G00650.1	protein_coding	FRIGIDA-like protein	Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.	FRIGIDA-like protein;(source:Araport11)
AT4G00480.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G00560.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G00490.1	protein_coding	beta-amylase 2	Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. It forms a tetramer whose activity requires K+ and exhibits sigmoidal kinetics Mutants of BAM2 have no visible phenotype.	beta-amylase 2;(source:Araport11)
AT4G00570.1	protein_coding	NAD-dependent malic enzyme 2	Encodes an NAD-dependent malic enzyme (NAD-ME) that does not act on oxaloacetate, indicating that it belongs to EC 1.1.1.39. It is a member of the beta family of NAD-MEs in plants. It appears to function as a homodimer or as a heterodimer with the alpha-type NAD-ME2 (At2g13560). NAD-ME2 transcript and protein levels are higher during the night than during the day.	NAD-dependent malic enzyme 2;(source:Araport11)
AT4G00660.1	protein_coding	RNAhelicase-like 8		RNAhelicase-like 8;(source:Araport11)
AT4G00500.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G00580.1	protein_coding	COP1-interacting protein-related		COP1-interacting protein-like protein;(source:Araport11)
AT4G00670.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT4G00590.1	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein		N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT4G00680.1	protein_coding	actin depolymerizing factor 8		actin depolymerizing factor 8;(source:Araport11)
AT4G00600.1	protein_coding	Amino acid dehydrogenase family protein		Amino acid dehydrogenase family protein;(source:Araport11)
AT4G00690.1	protein_coding	UB-like protease 1B		UB-like protease 1B;(source:Araport11)
AT4G00530.1	protein_coding			UvrABC system protein A;(source:Araport11)
AT4G00610.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT4G00700.1	protein_coding	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein		C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT4G00540.1	protein_coding	myb domain protein 3r2	Encodes a putative c-myb-like transcription factor.  Member of a class of domain proteins containing structural features of the vertebrate c-Myb proto-oncoprotein, including the presence of three Myb motifs (R1,R2,R3).	myb domain protein 3r2;(source:Araport11)
AT4G00620.1	protein_coding	Amino acid dehydrogenase family protein		Amino acid dehydrogenase family protein;(source:Araport11)
AT4G00710.1	protein_coding	BR-signaling kinase 3	Encodes BR-signaling kinase 3 (BSK3), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710).  Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized.	BR-signaling kinase 3;(source:Araport11)
AT4G00630.1	protein_coding	K+ efflux antiporter 2	Encodes a K(+)/H(+) antiporter that modulates monovalent cation and pH homeostasis in plant chloroplasts or plastids.	K+ efflux antiporter 2;(source:Araport11)
AT4G23080.1	protein_coding	Protein of Unknown Function (DUF239)		transmembrane protein, putative (DUF239);(source:Araport11)
AT4G23000.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT4G22920.1	protein_coding	non-yellowing 1	Similar to the tomato senescence-inducible chloroplast stay-green protein 1.  It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves. Acts antagonistically with SGR2 to balance chlorophyll catabolism in chloroplasts with  the dismantling and remobilizing of other cellular components in senescing leaf cells.	non-yellowing 1;(source:Araport11)
AT4G23090.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G23010.1	protein_coding	UDP-galactose transporter 2		UDP-galactose transporter 2;(source:Araport11)
AT4G22930.1	protein_coding	pyrimidin 4	Encodes dihydroorotase (PYR4).	pyrimidin 4;(source:Araport11)
AT4G23100.1	protein_coding	glutamate-cysteine ligase	Encodes the enzyme glutamate-cysteine ligase catalyzing the first, and rate-limiting, step of glutathione biosynthesis.  Required for cell proliferation at the root tip. Involved in susceptibility to the bacterial pathogen Pseudomonas syringae. Mutants are phytoalexin defective.	glutamate-cysteine ligase;(source:Araport11)
AT4G23020.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G23110.1	protein_coding	insulin-like growth factor binding	Encodes a protein that is expressed in nuclei of the central cell, endosperm, early embryo and seed coat. It is a phosphorylation target of protein kinase  CK2. It also interacts with MSI1, one of the core members of the Polycomb Repressive Complex 2 (PRC2), a master epigenetic regulator. It is likely to play a role in seed development along with the FIS2-PRC2 complex.	insulin-like growth factor binding protein;(source:Araport11)
AT4G22940.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G23030.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT4G23040.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT4G22860.1	protein_coding	Cell cycle regulated microtubule associated protein		Cell cycle regulated microtubule associated protein;(source:Araport11)
AT4G22870.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G22950.1	protein_coding	AGAMOUS-like 19	MADS-box protein AGL19	AGAMOUS-like 19;(source:Araport11)
AT4G22880.1	protein_coding	leucoanthocyanidin dioxygenase	encodes leucoanthocyanidin dioxygenase, which is involved in proanthocyanin biosynthesis. Mutant analysis suggests that this gene is also involved in vacuole formation.	leucoanthocyanidin dioxygenase;(source:Araport11)
AT4G22960.1	protein_coding	Protein of unknown function (DUF544)     		FAM63A-like protein (DUF544);(source:Araport11)
AT4G23050.1	protein_coding	PAS domain-containing protein tyrosine kinase family protein		PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT4G22890.1	protein_coding	PGR5-LIKE A	Encodes PGRL1A, a transmembrane protein present in thylakoids.  PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). The mRNA is cell-to-cell mobile.	PGR5-LIKE A;(source:Araport11)
AT4G22970.1	protein_coding	homolog of separase	Encodes a separase (ESP), homologous to human and mouse separase protein. Separase is a capase family protease required for the release of sister chromatid cohesion during meiosis and mitosis.  Arabidopsis separase contains a predicted 2Fe2S-ferredoxin domain that is not present in the proteins of other organisms. Also contains a putative EF-hand calcium binding domain. Mutant seeds exhibited embryo arrest at the globular stage. The endosperm also exhibited a weak titan-like phenotype. Transgenic plants expressing AESP RNA interference (RNAi) from the meiosis-specific DMC1 promoter exhibited alterations in chromosome segregation during meiosis I and II that resulted in polyads containing from one to eight microspores. Plays an essential role in embryo development.  Required for the removal of cohesin from meiotic chromosomes and establishment of meiotic nuclear domains. This gene was also identified through the rsw4 mutant. Lines carrying recessive, temperature-sensitive mutations exhibit reduced anisotropic growth at 30 degrees Celsius. Microtubules and cellulose microfibrils are not depleted or disoriented in the mutants at the restrictive temperature.	separase;(source:Araport11)
AT4G23060.1	protein_coding	IQ-domain 22	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 22;(source:Araport11)
AT4G22900.1	protein_coding	Protein of unknown function (DUF1191)		transmembrane protein, putative (DUF1191);(source:Araport11)
AT4G22980.1	protein_coding			molybdenum cofactor sulfurase-like protein;(source:Araport11)
AT4G23070.1	protein_coding	RHOMBOID-like protein 7		RHOMBOID-like protein 7;(source:Araport11)
AT4G22910.1	protein_coding	FIZZY-related 2		FIZZY-related 2;(source:Araport11)
AT4G22990.1	protein_coding	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein	Encodes a member of the PHOSPHATE TRANSPORTER 5 family (PHT5;3). Overexpression of PHT5:3 leads to Pi sequestration into vacuoles and altered regulation of Pi starvation-responsive genes.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT4G21230.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 27	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 27;(source:Araport11)
AT4G21150.1	protein_coding	ribophorin II (RPN2) family protein		ribophorin II (RPN2) family protein;(source:Araport11)
AT4G21240.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G21160.1	protein_coding	Calcium-dependent ARF-type GTPase activating protein family	ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	Calcium-dependent ARF-type GTPase activating protein family;(source:Araport11)
AT4G21250.1	protein_coding	Sulfite exporter TauE/SafE family protein		Sulfite exporter TauE/SafE family protein;(source:Araport11)
AT4G21260.1	protein_coding	Sulfite exporter TauE/SafE family protein		Sulfite exporter TauE/SafE family protein;(source:Araport11)
AT4G21080.1	protein_coding	Dof-type zinc finger domain-containing protein		Dof-type zinc finger domain-containing protein;(source:Araport11)
AT4G21090.1	protein_coding	MITOCHONDRIAL  FERREDOXIN 2		MITOCHONDRIAL FERREDOXIN 2;(source:Araport11)
AT4G21170.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G21100.1	protein_coding	damaged DNA binding protein 1B	One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. The DDB1b protein binds with a number of DWD-containing proteins and may form part of a CUL4-based E3 ubiquitin ligase.	damaged DNA binding protein 1B;(source:Araport11)
AT4G21180.1	protein_coding	DnaJ / Sec63 Brl domains-containing protein	J domain protein localized in ER membrane.	DnaJ / Sec63 Brl domains-containing protein;(source:Araport11)
AT4G21270.1	protein_coding	kinesin 1	Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.	kinesin 1;(source:Araport11)
AT4G21110.1	protein_coding	G10 family protein		G10 family protein;(source:Araport11)
AT4G21190.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G21120.1	protein_coding	amino acid transporter 1	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. The mRNA is cell-to-cell mobile.	amino acid transporter 1;(source:Araport11)
AT4G21200.1	protein_coding	gibberellin 2-oxidase 8	Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins.	gibberellin 2-oxidase 8;(source:Araport11)
AT4G21130.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	similar to man and yeast U3-55K genes, involved in processing of pre-ribosomal RNA.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G21210.1	protein_coding	PPDK regulatory protein	Encodes a PPDK regulatory protein that has both protein kinase and protein phosphatase activities towards PPDK (pyruvate orthophosphate dikinase).	PPDK regulatory protein;(source:Araport11)
AT4G21140.1	protein_coding			copper ion-binding protein;(source:Araport11)
AT4G21220.1	protein_coding	Trimeric LpxA-like enzymes superfamily protein		Trimeric LpxA-like enzymes superfamily protein;(source:Araport11)
AT4G22470.1	protein_coding	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	Encodes a hybrid proline-rich protein that contains two tandem PRD-8CMs (proline-rich domain-eight cysteine motif) that is involved in systemic acquired resistance.	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein;(source:Araport11)
AT4G22390.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT4G22400.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G22570.1	protein_coding	adenine phosphoribosyl transferase 3	Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher affinity for zeatin, isopentenyladenine and benzyladenine than APT1 but lower Vmax than APT1.	adenine phosphoribosyl transferase 3;(source:Araport11)
AT4G22490.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G22410.1	protein_coding	Ubiquitin C-terminal hydrolases superfamily protein		U4/U6.U5 tri-snRNP-associated-like protein;(source:Araport11)
AT4G22580.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT4G22590.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT4G22510.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G22430.1	protein_coding	F-box family protein		LOW protein: F-box/kelch-repeat protein;(source:Araport11)
AT4G22600.1	protein_coding		Encodes a protein involved in  involved in the formation of the pollen surface apertures. It acts late in aperture formation by excluding specific membrane domains from exine deposition.	transcription factor;(source:Araport11)
AT4G22440.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G22520.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G22610.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G22450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08200.1);(source:TAIR10)
AT4G22530.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G22460.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G22540.1	protein_coding	OSBP(oxysterol binding protein)-related protein 2A		OSBP(oxysterol binding protein)-related protein 2A;(source:Araport11)
AT4G22550.1	protein_coding	Phosphatidic acid phosphatase (PAP2) family protein		Phosphatidic acid phosphatase (PAP2) family protein;(source:Araport11)
AT4G22560.1	protein_coding			sulfated surface-like glycoprotein;(source:Araport11)
AT4G10530.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G10450.1	protein_coding	Ribosomal protein L6 family		Ribosomal protein L6 family;(source:Araport11)
AT4G10540.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G10460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.8e-291 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G10470.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G10480.1	protein_coding	Nascent polypeptide-associated complex (NAC), alpha subunit family protein		Nascent polypeptide-associated complex (NAC), alpha subunit family protein;(source:Araport11)
AT4G10490.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G10500.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G10510.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G10430.1	protein_coding	TMPIT-like protein		TMPIT-like protein;(source:Araport11)
AT4G10520.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G10440.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G32410.1	protein_coding	cellulose synthase 1	Encodes a cellulose synthase isomer. CESA1 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA1, along with CESA3 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. lasma membrane complex for cellulose biosynthesis. As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening.	cellulose synthase 1;(source:Araport11)
AT4G32420.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G32430.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	GRS1 is a mitochondrial PLS-type PRR protein  required for RNA editing and plant development.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G32440.1	protein_coding	Plant Tudor-like RNA-binding protein		Plant Tudor-like RNA-binding protein;(source:Araport11)
AT4G32370.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G32450.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G32460.1	protein_coding	Protein of unknown function, DUF642	BDX is a DUF642 cell wall protein primarily expressed in vascular tissues of roots, leaves and embryos. Mutants show defects in seed and embryo development.	choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT4G32380.1	protein_coding	Pectin lyase-like superfamily protein		pectin lyase superfamily protein;(source:Araport11)
AT4G32390.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT4G32470.1	protein_coding	Cytochrome bd ubiquinol oxidase, 14kDa subunit		Cytochrome bd ubiquinol oxidase, 14kDa subunit;(source:Araport11)
AT4G32400.1	protein_coding	Mitochondrial substrate carrier family protein	Encodes a  plastidial nucleotide uniport   carrier protein required to export newly synthesized adenylates into the cytosol.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G32480.1	protein_coding	Protein of unknown function (DUF506) 		sugar phosphate exchanger, putative (DUF506);(source:Araport11)
AT4G32490.1	protein_coding	early nodulin-like protein 4		early nodulin-like protein 4;(source:Araport11)
AT4G32500.1	protein_coding	K+ transporter 5	Encodes AKT5, a member of the Shaker family potassium ion (K+) channel.  This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).	K+ transporter 5;(source:Araport11)
AT4G35590.1	protein_coding	RWP-RK domain-containing protein		RWP-RK domain-containing protein;(source:Araport11)
AT4G35510.1	protein_coding			PHD finger-like protein;(source:Araport11)
AT4G35600.1	protein_coding	Protein kinase superfamily protein	Encodes a receptor-like cytoplasmic kinase that acts as a spatial inhibitor of cell separation. Analysis of the cDNA previously described in Meiners et al., 1991 revealed mistakes in the predicted open reading frame. The mRNA is cell-to-cell mobile.	Protein kinase superfamily protein;(source:Araport11)
AT4G35520.1	protein_coding	MUTL protein homolog 3	DNA mismatch repair protein similar to MutL. Required for normal levels of meiotic crossovers	MUTL protein homolog 3;(source:Araport11)
AT4G35690.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		hypothetical protein (DUF241);(source:Araport11)
AT4G35610.1	protein_coding	zinc finger (C2H2 type) family protein		zinc finger (C2H2 type) family protein;(source:Araport11)
AT4G35530.1	protein_coding	phosphatidylinositolglycan-related		phosphatidylinositolglycan-like protein;(source:Araport11)
AT4G35700.1	protein_coding	zinc finger (C2H2 type) family protein	Target promoter of the male germline-specific transcription factor DUO1.	zinc finger (C2H2 type) family protein;(source:Araport11)
AT4G35620.1	protein_coding	Cyclin B2;2		Cyclin B2;(source:Araport11)
AT4G35540.1	protein_coding	zinc ion binding;transcription regulators	Encodes a novel plant-specific TFIIB-related protein that can interact with TBP2 and bind DNA.  It can also form a homodimer and interact with the subunits of RNA polymerases.  Mutant pollen fails to germinate.	POLLEN-EXPRESSED TRANSCRIPTION FACTOR 2;(source:Araport11)
AT4G35710.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		DUF241 domain protein, putative (DUF241);(source:Araport11)
AT4G35630.1	protein_coding	phosphoserine aminotransferase	Encodes a phosphoserine aminotransferase which is involved in serine biosynthesis in the chloroplast which operates via the phosphorylated pathway. The mRNA is cell-to-cell mobile.	phosphoserine aminotransferase;(source:Araport11)
AT4G35550.1	protein_coding	WUSCHEL related homeobox 13	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. WOX13 is the only family member that does not contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.	WUSCHEL related homeobox 13;(source:Araport11)
AT4G35720.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		DUF241 domain protein, putative (DUF241);(source:Araport11)
AT4G35640.1	protein_coding	serine acetyltransferase 3;2	Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis.  Expressed in the vascular system.  Expression is induced in both roots and shoots under sulfur-starved conditions.	serine acetyltransferase 3;(source:Araport11)
AT4G35560.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Target promoter of the male germline-specific transcription factor DUO1. The mRNA is cell-to-cell mobile.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G35730.1	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT4G35650.1	protein_coding	isocitrate dehydrogenase III	Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase. In contrast to the broadly expressed other regulatory (IDH-I and IDH-II) and catalytic (IDH-V and IDH-VI) subunits of this enzyme, IDH-III expression appears to be restricted largely to pollen.	isocitrate dehydrogenase III;(source:Araport11)
AT4G35740.1	protein_coding	DEAD/DEAH box RNA helicase family protein 	Encodes RECQ3, an ATP-dependent helicase.	DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT4G35570.1	protein_coding	high mobility group B5	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Cannot be phosphorylated by CK2alpha.	high mobility group B5;(source:Araport11)
AT4G35660.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		selection/upkeep of intraepithelial T-cells protein, putative (DUF241);(source:Araport11)
AT4G35580.1	protein_coding	NAC transcription factor-like 9	Encodes a calmodulin-binding NAC protein (CBNAC). Contains calmodulin-binding domain in the C-terminus of the protein. Functions as a calmodulin-regulated transcriptional repressor.	NAC transcription factor-like 9;(source:Araport11)
AT4G35670.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G35680.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		selection/upkeep of intraepithelial T-cells protein;(source:Araport11)
AT4G31200.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein;(source:Araport11)
AT4G31290.1	protein_coding	ChaC-like family protein		ChaC-like family protein;(source:Araport11)
AT4G31210.1	protein_coding	DNA topoisomerase, type IA, core		DNA topoisomerase, type IA, core;(source:Araport11)
AT4G31300.1	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	Encodes 20S proteasome subunit PBA1 (PBA1). PBA1 acts as a plant caspase-3-like enzyme.	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT4G31310.1	protein_coding	AIG2-like (avirulence induced gene) family protein		AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT4G31230.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT4G31320.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G31240.1	protein_coding	protein kinase C-like zinc finger protein		protein kinase C-like zinc finger protein;(source:Araport11)
AT4G31330.1	protein_coding	Protein of unknown function, DUF599		transmembrane protein, putative (Protein of unknown function, DUF599);(source:Araport11)
AT4G31250.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G31340.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT4G31260.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G31350.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G31270.1	protein_coding	sequence-specific DNA binding transcription factors	Encodes IDAP2. Acts together with IDAP1 and IDM1 to regulate active DNA demethylation.	sequence-specific DNA binding transcription factor;(source:Araport11)
AT4G31360.1	protein_coding	selenium binding		selenium binding protein;(source:Araport11)
AT4G31280.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G11220.1	protein_coding	VIRB2-interacting protein 2		VIRB2-interacting protein 2;(source:Araport11)
AT4G11310.1	protein_coding	Papain family cysteine protease	cysteine proteinase precursor-like protein	Papain family cysteine protease;(source:Araport11)
AT4G11230.1	protein_coding	Riboflavin synthase-like superfamily protein	NADPH-oxidase RbohI is expressed highly in seeds and roots. Mutants have inreased sensitivity to osmotic stress suggesting a role in mediating cellular response to stress in roots.	Riboflavin synthase-like superfamily protein;(source:Araport11)
AT4G11320.1	protein_coding	Papain family cysteine protease		Papain family cysteine protease;(source:Araport11)
AT4G11240.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein	encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.	Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT4G11330.1	protein_coding	MAP kinase 5	MAP kinase	MAP kinase 5;(source:Araport11)
AT4G11250.1	protein_coding	AGAMOUS-like 52		AGAMOUS-like 52;(source:Araport11)
AT4G11340.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G11260.1	protein_coding	phosphatase-related	Functions in plant disease resistance signaling,  SCF(TIR1) mediated degradation of Aux/IAA proteins and HSP90 mediated degradation of R resistance proteins. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly  expressed than AtSGT1. The N-terminal TPR domain of  AtSGT1a reduces the steady-state level of Arabidopsis SGT1  proteins whereas the same domain from AtSGT1b enhances  SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance.	phosphatase-like protein;(source:Araport11)
AT4G11350.1	protein_coding	Protein of unknown function (DUF604)		transferring glycosyl group transferase (DUF604);(source:Araport11)
AT4G11270.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G11360.1	protein_coding	RING-H2 finger A1B	Encodes a putative RING-H2 finger protein RHA1b. The mRNA is cell-to-cell mobile.	RING-H2 finger A1B;(source:Araport11)
AT4G11280.1	protein_coding	1-aminocyclopropane-1-carboxylic acid (acc) synthase 6	encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family The mRNA is cell-to-cell mobile.	1-aminocyclopropane-1-carboxylic acid (acc) synthase 6;(source:Araport11)
AT4G11370.1	protein_coding	RING-H2 finger A1A	Encodes a putative RING-H2 finger protein RHA1a.	RING-H2 finger A1A;(source:Araport11)
AT4G11290.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT4G11380.1	protein_coding	Adaptin family protein		Adaptin family protein;(source:Araport11)
AT4G11300.1	protein_coding	Protein of unknown function (DUF793)		ROH1, putative (DUF793);(source:Araport11)
AT4G23550.1	protein_coding	WRKY family transcription factor	Encodes WRKY DNA-binding protein 29 (WRKY29). The mRNA is cell-to-cell mobile.	WRKY family transcription factor;(source:Araport11)
AT4G23560.1	protein_coding	glycosyl hydrolase 9B15		glycosyl hydrolase 9B15;(source:Araport11)
AT4G23640.1	protein_coding	Potassium transporter family protein	Functions as a potassium transporter and is required for the establishment of root tip growth.	Potassium transporter family protein;(source:Araport11)
AT4G23570.1	protein_coding	phosphatase-related	Closely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly  expressed than AtSGT1. The N-terminal TPR domain of  AtSGT1a reduces the steady-state level of Arabidopsis SGT1  proteins whereas the same domain from AtSGT1b enhances  SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.	phosphatase-like protein;(source:Araport11)
AT4G23650.1	protein_coding	calcium-dependent protein kinase 6	Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family.  CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites.  CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses.  CPK3 is expressed in both guard cells and mesophyll cells.  Functions in guard cell ion channel regulation.   ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells.  Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles.  CPK6 is also a member of the Arabidopsis CDPK family.	calcium-dependent protein kinase 6;(source:Araport11)
AT4G23740.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G23580.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G23660.1	protein_coding	polyprenyltransferase 1	Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50).	polyprenyltransferase 1;(source:Araport11)
AT4G23750.1	protein_coding	cytokinin response factor 2	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Monopteros target gene. CRF proteins relocalize to the nucleus in response to cytokinin.	cytokinin response factor 2;(source:Araport11)
AT4G23590.1	protein_coding	Tyrosine transaminase family protein		Tyrosine transaminase family protein;(source:Araport11)
AT4G23670.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT4G23760.1	protein_coding	Cox19-like CHCH family protein		Cox19-like CHCH family protein;(source:Araport11)
AT4G23680.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT4G23770.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G23600.1	protein_coding	Tyrosine transaminase family protein	Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis.  mRNA levels are elevated in response to wounding.	Tyrosine transaminase family protein;(source:Araport11)
AT4G23610.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT4G23690.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein	Encodes a homodimeric all-beta dirigent protein in the superfamily of calycins.  Dirigent proteins impart stereoselectivity on the phenoxy radical coupling reaction yielding optically active lignans from two molecules of coniferyl alcohol.	Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT4G23780.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G23620.1	protein_coding	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain		Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein;(source:Araport11)
AT4G23700.1	protein_coding	cation/H+ exchanger 17	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 17;(source:Araport11)
AT4G23790.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 24	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. Functions as a mannan O-acetyltransferase, catalyzing the 2-O and 3-O-monoacetylation of mannosyl residues.A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 24;(source:Araport11)
AT4G23630.1	protein_coding	VIRB2-interacting protein 1		VIRB2-interacting protein 1;(source:Araport11)
AT4G23710.1	protein_coding	vacuolar ATP synthase subunit G2		vacuolar ATP synthase subunit G2;(source:Araport11)
AT4G23800.1	protein_coding	HMG (high mobility group) box protein	Encodes a protein containing three copies of the HMG (high mobility group)-box domain.  The two Arabidopsis 3xHMG-box proteins are: AT4G11080 (3xHMG-box1) and AT4G23800 (3xHMG-box2).  Interacts with mitotic and meiotic chromosomes.	HMG (high mobility group) box protein;(source:Araport11)
AT4G23720.1	protein_coding	Protein of unknown function (DUF1191)		transmembrane protein, putative (DUF1191);(source:Araport11)
AT4G23730.1	protein_coding	Galactose mutarotase-like superfamily protein		Galactose mutarotase-like superfamily protein;(source:Araport11)
AT4G20330.1	protein_coding	Transcription initiation factor TFIIE, beta subunit		Transcription initiation factor TFIIE, beta subunit;(source:Araport11)
AT4G20420.1	protein_coding	Tapetum specific protein TAP35/TAP44		Tapetum specific protein TAP35/TAP44;(source:Araport11)
AT4G20340.1	protein_coding	Transcription factor TFIIE, alpha subunit		Transcription factor TFIIE, alpha subunit;(source:Araport11)
AT4G20430.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G20350.1	protein_coding	oxidoreductases		oxidoreductase;(source:Araport11)
AT4G20520.1	protein_coding	RNA binding;RNA-directed DNA polymerases		RNA binding / RNA-directed DNA polymerase;(source:Araport11)
AT4G20440.1	protein_coding	small nuclear ribonucleoprotein associated protein B		small nuclear ribonucleoprotein associated protein B;(source:Araport11)
AT4G20360.1	protein_coding	RAB GTPase homolog E1B	Nuclear transcribed, plastid localized EF-Tu translation elongation factor. Referred to as AtRabE1b in DOI:10.1104/pp.013052.  However, wider community usage and more publications assign the symbol RabE1b to At5g59840.	RAB GTPase homolog E1B;(source:Araport11)
AT4G20530.1	protein_coding	Protein with domains of unknown function (DUF26 and DUF1204)		cysteine-rich repeat secretory-like protein;(source:Araport11)
AT4G20450.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G20370.1	protein_coding	PEBP (phosphatidylethanolamine-binding protein) family protein	Encodes a floral inducer that is a homolog of FT.  Plants overexpressing this gene flower earlier than Col.  Loss-of-function mutations flower later in short days.  TSF and FT play overlapping roles in the promotion of flowering, with FT playing the dominant role and together playing an antagonistic role to TFL1 in the determination of inflorescence meristem identity. .TSF sequences show extensive variation in different accessions and may contribute to  quantitative variation in flowering time in these accessions. TSF has a complex pattern of spatial expression; it is expressed mainly in phloem and expression is regulated by daylength and vernalization.	PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11)
AT4G20460.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G20380.1	protein_coding	LSD1 zinc finger family protein	LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge	LSD1 zinc finger family protein;(source:Araport11)
AT4G20470.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G20390.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G20480.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT4G20400.1	protein_coding	JUMONJI 14	Encodes a histone H3K4 demethylase repressing floral transition.Coordinates and structure features have been deposited in the RCSB Protein Data Bank with the accession codes 5YKN (JMJ14CD) and 5YKO(JMJ14CD-NOG-H3K4em3 complex). Glu285 and Glu516 contribute to the recognition of H3R2. Asp312 contributes to the recognition of H3Q5. Phe171 and Val363 contribute to the recognition of H3A7. Ser290, Trp296, and Tyr298 contribute to the recognition of H3K4me3 (PMID:29233856).	JUMONJI 14;(source:Araport11)
AT4G20490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.5e-29 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT4G20410.1	protein_coding	gamma-soluble NSF attachment protein	Encodes a member of the gamma-soluble NSF attachment protein (gSNAP) gene family.	gamma-soluble NSF attachment protein;(source:Araport11)
AT4G20500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1);(source:TAIR10)
AT4G20510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1);(source:TAIR10)
AT4G03480.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G03490.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G03500.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G03420.1	protein_coding	Protein of unknown function (DUF789)		hypothetical protein (DUF789);(source:Araport11)
AT4G03510.1	protein_coding	RING membrane-anchor 1	RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity.	RING membrane-anchor 1;(source:Araport11)
AT4G03430.1	protein_coding	pre-mRNA splicing factor-related	Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes.	pre-mRNA splicing factor-like protein;(source:Araport11)
AT4G03440.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G03450.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G03460.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G03470.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G08140.1	protein_coding			26S proteasome non-ATPase regulatory subunit-like protein;(source:Araport11)
AT4G08150.1	protein_coding	KNOTTED-like from Arabidopsis thaliana	A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.	homeobox knotted-like protein;(source:Araport11)
AT4G08160.1	protein_coding	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein;(source:Araport11)
AT4G08100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.2e-123 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G08110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-66 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G08120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 1.0e-25 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT4G08130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37045.1);(source:TAIR10)
AT4G30160.1	protein_coding	villin 4	Encodes a major actin filament bundling protein that is involved in root hair growth through regulating actin organization in a Ca2+-dependent manner.	villin 4;(source:Araport11)
AT4G30250.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G30170.1	protein_coding	Peroxidase family protein		Peroxidase family protein;(source:Araport11)
AT4G30260.1	protein_coding	Integral membrane Yip1 family protein	Encodes one of the two YPT/RAB GTPase Interacting Protein 4a (YIP4a) and YIP4b (formerly YIP2), which form a TGN-localized complex with ECHIDNA (ECH). This complex is required for the secretion of cell wall polysaccharides.	Integral membrane Yip1 family protein;(source:Araport11)
AT4G30180.1	protein_coding	sequence-specific DNA binding transcription factors;transcription regulators		hypothetical protein;(source:Araport11)
AT4G30270.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 24	encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response.	xyloglucan endotransglucosylase/hydrolase 24;(source:Araport11)
AT4G30190.1	protein_coding	H(+)-ATPase 2	Belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory  regions within the C-terminal domain. Its plasma membrane localization is light-dependent.	H[+]-ATPase 2;(source:Araport11)
AT4G30200.1	protein_coding	vernalization5/VIN3-like	Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.	vernalization5/VIN3-like protein;(source:Araport11)
AT4G30210.1	protein_coding	P450 reductase 2	Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway. The mRNA is cell-to-cell mobile.	P450 reductase 2;(source:Araport11)
AT4G30220.1	protein_coding	small nuclear ribonucleoprotein F		small nuclear ribonucleoprotein F;(source:Araport11)
AT4G30230.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G30240.1	protein_coding	Syntaxin/t-SNARE family protein		Syntaxin/t-SNARE family protein;(source:Araport11)
AT4G17420.1	protein_coding	Tryptophan RNA-binding attenuator protein-like	PAWH1 along with PAWH2 is part of endoplasmic reticulum ubiquitin ligase complex with Arabidopsis HRD1 via interaction with EBS7. As such it plays a role in promoting protein degradation via the ERAD pathway.	Tryptophan RNA-binding attenuator protein-like protein;(source:Araport11)
AT4G16660.1	protein_coding	heat shock protein 70 (Hsp 70) family protein		heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT4G17430.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT4G16670.1	protein_coding	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region	FORKED-LIKE family member, part of Group 3 (Group 1 consists of FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT4G16680.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G16690.1	protein_coding	methyl esterase 16	Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on MeSA, MeGA4, or MEGA9 in vitro. Although MES16 is similar to MES17, a MeIAA hydrolase, two mes16 mutant lines (SALK_151578) and (SALK_139756) do not show altered sensitivity to MeIAA in root growth assays. MES16 transcripts appear to be more than 10-fold less abundant than those of MES17 in roots.	methyl esterase 16;(source:Araport11)
AT4G16700.1	protein_coding	phosphatidylserine decarboxylase 1	Encodes a mitochondrial phosphatidylserine decarboxylase. Expressed mainly in roots and flowers.	phosphatidylserine decarboxylase 1;(source:Araport11)
AT4G17440.1	protein_coding	Protein of unknown function (DUF1639)		chromogranin (DUF1639);(source:Araport11)
AT4G17450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.4e-306 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G17460.1	protein_coding	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein	Encodes a class II HD-ZIP protein that regulates meristematic activity in different tissues, and that it is necessary for the correct formation of the gynoecium.	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein;(source:Araport11)
AT4G17470.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G16710.1	protein_coding	glycosyltransferase family protein 28		glycosyltransferase family protein 28;(source:Araport11)
AT4G17480.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G16720.1	protein_coding	Ribosomal protein L23/L15e family protein		Ribosomal protein L23/L15e family protein;(source:Araport11)
AT4G17483.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G16730.1	protein_coding	terpene synthase 02	In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides  downstream of the start codon leading to a  frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.	terpene synthase 02;(source:Araport11)
AT4G17486.1	protein_coding	PPPDE putative thiol peptidase family protein		PPPDE putative thiol peptidase family protein;(source:Araport11)
AT4G16740.1	protein_coding	terpene synthase 03	Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect <i>Plutella xylostella</i>. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.	terpene synthase 03;(source:Araport11)
AT4G17490.1	protein_coding	ethylene responsive element binding factor 6	Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. It is involved in the response to reactive oxygen species and light stress.	ethylene responsive element binding factor 6;(source:Araport11)
AT4G16750.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G17500.1	protein_coding	ethylene responsive element binding factor 1	Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. The mRNA is cell-to-cell mobile.	ethylene responsive element binding factor 1;(source:Araport11)
AT4G16760.1	protein_coding	acyl-CoA oxidase 1	Encodes a medium to long-chain acyl-CoA oxidase. Catalyzes the first step of fatty acid beta-oxidation. Involved in jasmonate biosynthesis. Gene expression is induced by wounding, drought stress, abscisic acid, and jasmonate.	acyl-CoA oxidase 1;(source:Araport11)
AT4G17505.1	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal proteinase-like protein (DUF239);(source:Araport11)
AT4G16780.1	protein_coding	homeobox protein 2	Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light.  It is also involved in cell expansion and cell proliferation and in the response to auxin. The mRNA is cell-to-cell mobile.	homeobox protein 2;(source:Araport11)
AT4G16790.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G16800.1	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	3-methylglutaconyl-CoA hydratase localized to mitochondria. Knockout displays accelerated senescence when subjected to extended dark conditions;knockout senescing leaves and knockout seeds accumulate leu, ile, and val.	ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT4G17510.1	protein_coding	ubiquitin C-terminal hydrolase 3		ubiquitin C-terminal hydrolase 3;(source:Araport11)
AT4G17520.1	protein_coding	Hyaluronan / mRNA binding family		Hyaluronan / mRNA binding family;(source:Araport11)
AT4G17530.1	protein_coding	RAB GTPase homolog 1C	AtRabD2c encodes a Rab GTPase, which plays important roles in pollen development, germination and tube elongation.	RAB GTPase homolog 1C;(source:Araport11)
AT4G17540.1	protein_coding			dynamin;(source:Araport11)
AT4G16810.1	protein_coding	VEFS-Box of polycomb protein		VEFS-Box of polycomb protein;(source:Araport11)
AT4G17550.1	protein_coding	Major facilitator superfamily protein	Encodes a member of the phosphate starvation-induced glycerol-3-phosphate permease gene family: AT3G47420(G3Pp1), AT4G25220(G3Pp2), AT1G30560(G3Pp3), AT4G17550(G3Pp4) and AT2G13100(G3Pp5).	Major facilitator superfamily protein;(source:Araport11)
AT4G16820.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G17560.1	protein_coding	Ribosomal protein L19 family protein		Ribosomal protein L19 family protein;(source:Araport11)
AT4G16830.1	protein_coding	Hyaluronan / mRNA binding family	Encodes a perinuclear and cytoplasmically localized mRNA binding protein. AtRGGA is likely involved in stress responsivness. It is induced by salt and osmotic stress and loss of function mutations are more sensitive to stress. The mRNA is cell-to-cell mobile.	Hyaluronan / mRNA binding family;(source:Araport11)
AT4G17565.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT4G16840.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G17570.1	protein_coding	GATA transcription factor 26	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 26;(source:Araport11)
AT4G16850.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G17580.1	protein_coding	Bax inhibitor-1 family protein		Bax inhibitor-1 family protein;(source:Araport11)
AT4G16860.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	Confers resistance to Peronospora parasitica.  RPP4 is coordinately regulated by transcriptional activation and RNA silencing.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G17585.1	protein_coding	Aluminium activated malate transporter family protein		aluminum activated malate transporter family protein;(source:Araport11)
AT4G16880.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G16890.1	protein_coding	disease resistance protein (TIR-NBS-LRR class), putative	Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu-  rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.	TIR-NBS-LRR class disease resistance protein;(source:Araport11)
AT4G16910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.1e-185 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G13930.1	protein_coding	serine hydroxymethyltransferase 4	Encodes a serine hydroxymethyltransferase maximally expressed in root	serine hydroxymethyltransferase 4;(source:Araport11)
AT4G13940.1	protein_coding	S-adenosyl-L-homocysteine hydrolase	Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. The mRNA is cell-to-cell mobile.	S-adenosyl-L-homocysteine hydrolase;(source:Araport11)
AT4G13950.1	protein_coding	ralf-like 31	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 31;(source:Araport11)
AT4G13960.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G13970.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT4G13980.1	protein_coding	winged-helix DNA-binding transcription factor family protein	member of Heat Stress Transcription Factor (Hsf) family	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT4G13990.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT4G14000.1	protein_coding	Putative methyltransferase family protein		Putative methyltransferase family protein;(source:Araport11)
AT4G17590.1	protein_coding			NOL1/NOP2/sun family protein;(source:Araport11)
AT4G17600.1	protein_coding	Chlorophyll A-B binding family protein	Encodes Lil3:1 (light-harvesting-like) protein.  Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.  A generic LHC motif is present in Lil3:1. The mRNA is cell-to-cell mobile.	Chlorophyll A-B binding family protein;(source:Araport11)
AT4G17610.1	protein_coding	tRNA/rRNA methyltransferase (SpoU) family protein		tRNA/rRNA methyltransferase (SpoU) family protein;(source:Araport11)
AT4G17615.1	protein_coding	calcineurin B-like protein 1	Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.	calcineurin B-like protein 1;(source:Araport11)
AT4G17620.1	protein_coding	glycine-rich protein	NAD-RNA decapping enzyme.Mediates the connection between  RNA turnover and retrograde chloroplast-to-nucleus signaling.	glycine-rich protein;(source:Araport11)
AT4G17640.1	protein_coding	casein kinase II  beta chain 2	Encodes casein kinase II beta (regulatory) subunit.	casein kinase II beta chain 2;(source:Araport11)
AT4G17650.1	protein_coding	Polyketide cyclase / dehydrase and lipid transport protein		Polyketide cyclase / dehydrase and lipid transport protein;(source:Araport11)
AT4G17660.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G17670.1	protein_coding	Protein of unknown function (DUF581)		senescence-associated family protein (DUF581);(source:Araport11)
AT4G17680.1	protein_coding	SBP (S-ribonuclease binding protein) family protein		SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT4G14010.1	protein_coding	ralf-like 32	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 32;(source:Araport11)
AT4G14020.1	protein_coding	Rapid alkalinization factor (RALF) family protein		Rapid alkalinization factor (RALF) family protein;(source:Araport11)
AT4G14030.1	protein_coding	selenium-binding protein 1		selenium-binding protein 1;(source:Araport11)
AT4G14040.1	protein_coding	selenium-binding protein 2		selenium-binding protein 2;(source:Araport11)
AT4G14050.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G14060.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT4G14070.1	protein_coding	acyl-activating enzyme 15	Plastidic acyl activating enzyme involved in the elongation of exogenous medium-chain fatty acids to 16- and 18-carbon fatty acids.	acyl-activating enzyme 15;(source:Araport11)
AT4G14080.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT4G14090.1	protein_coding	UDP-Glycosyltransferase superfamily protein	The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G17690.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT4G17700.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G17710.1	protein_coding	homeodomain GLABROUS 4	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	homeodomain GLABROUS 4;(source:Araport11)
AT4G17720.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G17730.1	protein_coding	syntaxin of plants  23	member of SYP2 Gene Family	syntaxin of plants 23;(source:Araport11)
AT4G17740.1	protein_coding	Peptidase S41 family protein		Peptidase S41 family protein;(source:Araport11)
AT4G17750.1	protein_coding	heat shock factor 1	native protein is a trimer, interacts with HSP70, also with TBP, DNA interaction is modulated by phosphorylation  and is heat-shock inducible	heat shock factor 1;(source:Araport11)
AT4G17760.1	protein_coding	damaged DNA binding;exodeoxyribonuclease IIIs		PCNA domain-containing protein;(source:Araport11)
AT4G17770.1	protein_coding	trehalose phosphatase/synthase 5	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. Phosphorylated TPS5 extracted from Arabidopsis cells binds directly to 14-3-3 isoforms. The mRNA is cell-to-cell mobile.	trehalose phosphatase/synthase 5;(source:Araport11)
AT4G17780.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G14110.1	protein_coding	COP9 signalosome, subunit CSN8	Represses photomorphogenesis and induces skotomorphogenesis in the dark. A component of the COP9 signalosome complex.	COP9 signalosome, subunit CSN8;(source:Araport11)
AT4G14120.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G14130.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 15	xyloglucan endotransglycosylase-related protein (XTR7)	xyloglucan endotransglucosylase/hydrolase 15;(source:Araport11)
AT4G14140.1	protein_coding	DNA methyltransferase 2	This gene is predicted to encode a DNA methyltransferase. A plant line expressing an RNAi construct directed against DMT2 has reduced agrobacterium-mediated tumor formation.	DNA methyltransferase 2;(source:Araport11)
AT4G14150.1	protein_coding	phragmoplast-associated kinesin-related protein 1	Microtubule motor kinesin PAKRP1/Kinesin-12A. Together with PAKRP1L/Kinesin-12B, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast.	phragmoplast-associated kinesin-related protein 1;(source:Araport11)
AT4G14160.1	protein_coding	Sec23/Sec24 protein transport family protein		Sec23/Sec24 protein transport family protein;(source:Araport11)
AT4G14170.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G14180.1	protein_coding	putative recombination initiation defect 1	Encodes a protein that is involved in meiotic recombination and is required for meiotic double strand break repair.	putative recombination initiation defect 1;(source:Araport11)
AT4G14190.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G14200.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G17790.1	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT4G17800.1	protein_coding	Predicted AT-hook DNA-binding family protein		Putative AT-hook DNA-binding family protein;(source:Araport11)
AT4G17810.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT4G14910.1	protein_coding	HISTIDINE BIOSYNTHESIS 5B	Encodes a protein that is predicted to act as a imidazoleglycerol-phosphate dehydratase involved in histidine biosynthesis	HISTIDINE BIOSYNTHESIS 5B;(source:Araport11)
AT4G14920.1	protein_coding	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein		Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT4G14930.1	protein_coding	Survival protein SurE-like phosphatase/nucleotidase		Survival protein SurE-like phosphatase/nucleotidase;(source:Araport11)
AT4G14210.1	protein_coding	phytoene desaturase 3	Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.	phytoene desaturase 3;(source:Araport11)
AT4G14940.1	protein_coding	amine oxidase 1	atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development.	amine oxidase 1;(source:Araport11)
AT4G14220.1	protein_coding	RING-H2 group F1A	encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. RHF1a can interact with the cell cycle inhibitor ICK4/KRP6 in vitro. It apppears to target ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF1a is expressed in the carpels throughout floral development. It is expressed in various tissues of the anthers during the early stages of anther development but not in stage 12 flowers and beyond. The mRNA is cell-to-cell mobile.	RING-H2 group F1A;(source:Araport11)
AT4G14950.1	protein_coding	SNARE associated Golgi protein family	KMS1 encode a endoplasmic reticulum protein  involved in the early secretory pathway.	SNARE associated Golgi protein family;(source:Araport11)
AT4G14230.1	protein_coding	CBS domain-containing protein with a domain of unknown function (DUF21)		CBS domain protein with a domain protein (DUF21);(source:Araport11)
AT4G14240.1	protein_coding	CBS domain-containing protein with a domain of unknown function (DUF21)		CBS domain protein with a domain protein (DUF21);(source:Araport11)
AT4G14970.1	protein_coding		Encodes a protein that is required for  meiotic homologous recombination and acts in parallel to both MUTS HOMOLOG 4 (AtMSH4), known for its role in promoting interfering cross-overs (COs) and MMS AND UV SENSITIVE 81 (AtMUS81), known for its role in the formation of non-interfering COs.	fanconi anemia group D2 protein;(source:Araport11)
AT4G14250.1	protein_coding	structural constituent of ribosome	This locus is annotated as a protein-coding gene in TAIR10. Based on communication with Jean-Luc GALLOIS (April 2013), this gene is split into two UBX domain-containing pseudogenes: one retains the original name: AT4G14250 (Chr4:8213237..8211984), one given a new locus identifier AT4G14245 (Chr4:8210231..8208985). Note that the Map Detail Image on the locus detial page and in GBrowse will not be updated until after the next genome release.	structural constituent of ribosome protein;(source:Araport11)
AT4G14980.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G14260.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT4G14990.1	protein_coding	Topoisomerase II-associated protein PAT1		Topoisomerase II-associated protein PAT1;(source:Araport11)
AT4G14270.1	protein_coding		Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.	polyadenylate-binding protein interacting protein;(source:Araport11)
AT4G15000.1	protein_coding	Ribosomal L27e protein family		Ribosomal L27e protein family;(source:Araport11)
AT4G14280.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G14290.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G14300.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Belongs to a member of the RNA-binding glycine-rich (RBG) gene superfamily.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G15010.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G15020.1	protein_coding	hAT transposon superfamily		hAT transposon superfamily;(source:Araport11)
AT4G15030.1	protein_coding			folate-sensitive fragile site protein;(source:Araport11)
AT4G14310.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G15040.1	protein_coding	Subtilisin-like serine endopeptidase family protein		Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT4G14320.1	protein_coding	Zinc-binding ribosomal protein family protein		Zinc-binding ribosomal protein family protein;(source:Araport11)
AT4G15050.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT4G14330.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Orphan kinesin with processive motility on single microtubules.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G15060.1	protein_coding			FBD, F-box/LRR protein;(source:Araport11)
AT4G14340.1	protein_coding	casein kinase I	Phosphorylates serine or threonine residues that are near and C-terminal to acidic side chains on a variety of target proteins. Member of CKL gene family (CKL-C group).	casein kinase I;(source:Araport11)
AT4G15070.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G14350.1	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein		AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT4G15080.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT4G14360.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G15090.1	protein_coding	FRS (FAR1 Related Sequences) transcription factor family	Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3.	FRS (FAR1 Related Sequences) transcription factor family;(source:Araport11)
AT4G14370.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G15100.1	protein_coding	serine carboxypeptidase-like 30		serine carboxypeptidase-like 30;(source:Araport11)
AT4G14380.1	protein_coding			cotton fiber protein;(source:Araport11)
AT4G14390.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G14400.1	protein_coding	ankyrin repeat family protein	encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.	ankyrin repeat family protein;(source:Araport11)
AT4G15110.1	protein_coding	cytochrome P450, family 97, subfamily B, polypeptide 3	member of CYP97B	cytochrome P450, family 97, subfamily B, polypeptide 3;(source:Araport11)
AT4G15120.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT4G15130.1	protein_coding	phosphorylcholine cytidylyltransferase2		phosphorylcholine cytidylyltransferase2;(source:Araport11)
AT4G14410.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Basic helix loop helix transcription factor involved in stress mediated signaling during germination.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G15140.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G14420.1	protein_coding	HR-like lesion-inducing protein-related		HR-like lesion-inducing protein-like protein;(source:Araport11)
AT4G15150.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G14430.1	protein_coding	indole-3-butyric acid response 10	Encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation. This enzyme might also be involved in the conversion of indole-3-butyric acid to indole-3-acetic acid via a beta-oxidation-like pathway.	indole-3-butyric acid response 10;(source:Araport11)
AT4G15160.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	According to PMID:14623884,  PAC2 has not been correctly annotated; At4g15160 (protease inhibitor/seed storage/lipid transfer protein (LTP) family protein) containsAtPAC2(nucleotides 3269-3831).	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G14440.1	protein_coding	3-hydroxyacyl-CoA dehydratase 1	encodes a cytosolic delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation	3-hydroxyacyl-CoA dehydratase 1;(source:Araport11)
AT4G14450.1	protein_coding		A member of a small family of proline/serine rich proteins of unknown function. It interacts with defense related MAP kinase MPK6. It's expression is induced by PAMP elicitors. May play a role in response to pathogens.	hypothetical protein;(source:Araport11)
AT4G15180.1	protein_coding	SET domain protein 2	Encodes SET domain containing protein that acts redundantly with ATX4/5 to regulate histone H3-K4 methylation.	SET domain protein 2;(source:Araport11)
AT4G14460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.2e-253 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G14470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.1e-25 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT4G15200.1	protein_coding	formin 3	Actin nucleation factor that directs the formation of actin cables in pollen tubes. Involved in cytoplasmic streaming and polarized growth in pollen tubes.	formin 3;(source:Araport11)
AT4G14480.1	protein_coding	Protein kinase superfamily protein	Encodes a putative Ser/Thr protein kinase, BLUS1 (BLUE LIGHT SIGNALING1). BLUS1 functions as a phototropin substrate and primary regulator of stomatal control to enhance photosynthetic CO2 assimilation under natural light conditions.	Protein kinase superfamily protein;(source:Araport11)
AT4G14490.1	protein_coding	SMAD/FHA domain-containing protein 		SMAD/FHA domain-containing protein;(source:Araport11)
AT4G14500.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT4G15910.1	protein_coding	drought-induced 21	encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. The mRNA is cell-to-cell mobile.	drought-induced 21;(source:Araport11)
AT4G15920.1	protein_coding	Nodulin MtN3 family protein	Encodes a vacuolar fructose transporter expressed in parenchyma and xylem that controls leaf fructose content. When its expression is reduced, fructose accumulates in leaves.	Nodulin MtN3 family protein;(source:Araport11)
AT4G15930.1	protein_coding	Dynein light chain type 1 family protein		Dynein light chain type 1 family protein;(source:Araport11)
AT4G15210.1	protein_coding	beta-amylase 5	cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.	beta-amylase 5;(source:Araport11)
AT4G15940.1	protein_coding	Fumarylacetoacetate (FAA) hydrolase family		Fumarylacetoacetate (FAA) hydrolase family;(source:Araport11)
AT4G15950.1	protein_coding	RNA polymerase II, Rpb4, core protein	Non-catalytic subunit common to Nuclear DNA-dependent RNA polymerases IV and V; homologous to budding yeast RPB4. Role in gene silencing. Required for RNA-directed DNA methylation.	RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT4G15230.1	protein_coding	pleiotropic drug resistance 2		pleiotropic drug resistance 2;(source:Araport11)
AT4G15960.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G14510.1	protein_coding	CRM family member 3B	Encodes a CRM domain protein CFM3b.  Homolog of CFM3a (AT3G23070).  CFM3a is shown to function in the splicing of group IIB introns in chloroplasts.	CRM family member 3B;(source:Araport11)
AT4G15240.1	protein_coding	Protein of unknown function (DUF604)		glycosyltransferase (DUF604);(source:Araport11)
AT4G15970.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein		Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT4G14520.1	protein_coding	DNA-directed RNA polymerase II-related		DNA-directed RNA polymerase II-like protein;(source:Araport11)
AT4G15250.1	protein_coding	B-box type zinc finger protein with CCT domain		B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT4G15980.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT4G14530.1	protein_coding			agamous-like MADS-box protein;(source:Araport11)
AT4G15260.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G15990.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G14540.1	protein_coding	nuclear factor Y, subunit B3		nuclear factor Y, subunit B3;(source:Araport11)
AT4G15270.1	protein_coding	glucosyltransferase-related		glucosyltransferase-like protein;(source:Araport11)
AT4G16000.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G14550.1	protein_coding	indole-3-acetic acid inducible 14	IAA14 is a member of the Aux/IAA protein family.   Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19.	indole-3-acetic acid inducible 14;(source:Araport11)
AT4G15280.1	protein_coding	UDP-glucosyl transferase 71B5		UDP-glucosyl transferase 71B5;(source:Araport11)
AT4G14560.1	protein_coding	indole-3-acetic acid inducible	auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein. The mRNA is cell-to-cell mobile.	indole-3-acetic acid inducible;(source:Araport11)
AT4G15290.1	protein_coding	Cellulose synthase family protein	Encodes a gene similar to cellulose synthase. Mutants exhibit shorter root hairs under phosphate-deficient conditions.	Cellulose synthase family protein;(source:Araport11)
AT4G14570.1	protein_coding	acylaminoacyl-peptidase-related	Encodes an acylamino acid-releasing enzyme (AARE) catalyzing the N-terminal hydrolysis   of N[alpha]-acylpeptides to release N[alpha]-acylated amino acids The mRNA is cell-to-cell mobile.	acylaminoacyl-peptidase-like protein;(source:Araport11)
AT4G15300.1	protein_coding	cytochrome P450, family 702, subfamily A, polypeptide 2		cytochrome P450, family 702, subfamily A, polypeptide 2;(source:Araport11)
AT4G14580.1	protein_coding	CBL-interacting protein kinase 4	CBL-interacting protein kinase	CBL-interacting protein kinase 4;(source:Araport11)
AT4G14590.1	protein_coding	embryo defective 2739		embryo defective 2739;(source:Araport11)
AT4G14600.1	protein_coding	Target SNARE coiled-coil domain protein		Target SNARE coiled-coil domain protein;(source:Araport11)
AT4G16010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.9e-185 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT4G16030.1	protein_coding	Ribosomal protein L19e family protein		Ribosomal protein L19e family protein;(source:Araport11)
AT4G15310.1	protein_coding	cytochrome P450, family 702, subfamily A, polypeptide 3	a member of the cytochrome P450 gene family. molecular function unknown.	cytochrome P450, family 702, subfamily A, polypeptide 3;(source:Araport11)
AT4G16040.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G15320.1	protein_coding	cellulose synthase-like B6	encodes a gene similar to cellulose synthase	cellulose synthase-like B6;(source:Araport11)
AT4G16050.1	protein_coding	Aminotransferase-like, plant mobile domain family protein		Aminotransferase-like, plant mobile domain family protein;(source:Araport11)
AT4G15330.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 1		cytochrome P450, family 705, subfamily A, polypeptide 1;(source:Araport11)
AT4G16060.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G14610.1	pseudogene		Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT4G15340.1	protein_coding	pentacyclic triterpene synthase 1	Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast.	pentacyclic triterpene synthase 1;(source:Araport11)
AT4G16070.1	protein_coding	Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3		lipase class 3 family protein;(source:Araport11)
AT4G14620.1	protein_coding	Protein of unknown function (DUF506) 		hypothetical protein (DUF506);(source:Araport11)
AT4G15350.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 2	member of CYP705A	cytochrome P450, family 705, subfamily A, polypeptide 2;(source:Araport11)
AT4G16080.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT4G14630.1	protein_coding	germin-like protein 9	germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell. The mRNA is cell-to-cell mobile.	germin-like protein 9;(source:Araport11)
AT4G15360.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 3	member of CYP705A	cytochrome P450, family 705, subfamily A, polypeptide 3;(source:Araport11)
AT4G16090.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G14640.1	protein_coding	calmodulin 8	encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1). Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms.	calmodulin 8;(source:Araport11)
AT4G15370.1	protein_coding	baruol synthase 1	Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.	baruol synthase 1;(source:Araport11)
AT4G16100.1	protein_coding	Protein of unknown function (DUF789)		heat shock protein, putative (DUF789);(source:Araport11)
AT4G14650.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G15380.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 4	member of CYP705A	cytochrome P450, family 705, subfamily A, polypeptide 4;(source:Araport11)
AT4G14660.1	protein_coding	RNA polymerase Rpb7-like, N-terminal domain	Non-catalytic subunit specific to DNA-directed RNA polymerase V; homologous to budding yeast RPB7	RNA polymerase Rpb7-like, N-terminal domain-containing protein;(source:Araport11)
AT4G15390.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT4G14670.1	protein_coding	casein lytic proteinase B2	This locus was originally annotated as encoding ClpB2 (also referred to as Hsp92.7), which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  However, according to Lee et al. (2007, Plant Journal, 49:115-127), there is no evidence for expression of an appropriate-sized mRNA from this locus.  Re-annotation of the genome indicates that this locus potentially encodes a 68.8-kDa protein, containing only the N-terminal two thirds of the originally predicted open reading frame.  This locus contains a 626-bp deletion in WS ecotype compared with the Col ecotype, which eliminates residues 1-86 of the predicted protein.	casein lytic proteinase B2;(source:Araport11)
AT4G15400.1	protein_coding	HXXXD-type acyl-transferase family protein	Encodes BIA1, a member of the BAHD acyltransferase family. Plays a role in controlling brassinosteroids levels, particularly in the root and hypocotyl in darkness.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT4G14680.1	protein_coding	Pseudouridine synthase/archaeosine transglycosylase-like family protein	Encodes one of three A. thaliana ATP-sulfurylases. APS is the first enzyme of sulfate assimilation that catalyzes the formation of adenosine-5'-phosphosulfate from ATP and sulfate.	Pseudouridine synthase/archaeosine transglycosylase-like family protein;(source:Araport11)
AT4G14690.1	protein_coding	Chlorophyll A-B binding family protein	Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was  downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly  of pigment-binding proteins for photosynthesis.	Chlorophyll A-B binding family protein;(source:Araport11)
AT4G14700.1	protein_coding	origin recognition complex 1	Encodes origin of replication complex 1a subunit.The protein contains a PHD domain,binds methylated DNA and appears to function as a transcriptional activator.	origin recognition complex 1;(source:Araport11)
AT4G16110.1	protein_coding	response regulator 2	Encodes a pollen-specific transcription factor involved in the expression of nuclear genes for components of mitochondrial complex I in Arabidopsis. Acts in concert with other type-B ARRs in the cytokinin signaling pathway. AHK3 mediates cytokinin-induced phosphorylation of ARR2 on the Asp-80 residue. This phosphorylation plays a positive role of ARR2 in cytokinin-mediated control of leaf longevity. Also involved in cytokinin-dependent inhibition of hypocotyl elongation.	response regulator 2;(source:Araport11)
AT4G16120.1	protein_coding	COBRA-like protein-7 precursor	putative membrane-anchored cell wall protein	COBRA-like protein-7 precursor;(source:Araport11)
AT4G16130.1	protein_coding	arabinose kinase	Similar to galactokinase.	arabinose kinase;(source:Araport11)
AT4G15410.1	protein_coding	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma		serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma;(source:Araport11)
AT4G16140.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT4G15420.1	protein_coding	Ubiquitin fusion degradation UFD1 family protein		Ubiquitin fusion degradation UFD1 family protein;(source:Araport11)
AT4G16150.1	protein_coding	calmodulin binding;transcription regulators	CATMA5 is a transcriptional activator. It acts in the cold response pathway, it can bind to and activate the expression of DREB1 genes.	calmodulin-binding transcription activator 5;(source:Araport11)
AT4G15430.1	protein_coding	ERD (early-responsive to dehydration stress) family protein		ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G16160.1	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco.	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT4G14710.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT4G15440.1	protein_coding	hydroperoxide lyase 1	Encodes a hydroperoxide lyase.  Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first  exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase.	hydroperoxide lyase 1;(source:Araport11)
AT4G14720.1	protein_coding	TIFY domain/Divergent CCT motif family protein	PPD2 (and its paralog, PPD1) encode plant-specific putative DNA-binding proteins.  Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth.	TIFY domain/Divergent CCT motif family protein;(source:Araport11)
AT4G15450.1	protein_coding	Senescence/dehydration-associated protein-related		Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT4G16180.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G14730.1	protein_coding	Bax inhibitor-1 family protein	Stress induced membrane protein. Mutants show enhanced cell death under stress.	Bax inhibitor-1 family protein;(source:Araport11)
AT4G15460.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G16190.1	protein_coding	Papain family cysteine protease		Papain family cysteine protease;(source:Araport11)
AT4G14740.1	protein_coding	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region	FORKED-LIKE family member, part of Group 1 (FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT4G15470.1	protein_coding	Bax inhibitor-1 family protein		Bax inhibitor-1 family protein;(source:Araport11)
AT4G16200.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT4G14750.1	protein_coding	IQ-domain 19	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 19;(source:Araport11)
AT4G15480.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G14760.1	protein_coding	kinase interacting (KIP1-like) family protein		kinase interacting (KIP1-like) family protein;(source:Araport11)
AT4G15490.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G14770.1	protein_coding	TESMIN/TSO1-like CXC 2	Regulates fate transition and cell Divisions in the stomatal lineage.	TESMIN/TSO1-like CXC 2;(source:Araport11)
AT4G15500.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G14780.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G14790.1	protein_coding	ATP-dependent RNA helicase, mitochondrial (SUV3)	encodes a nuclear-encoded DExH box RNA helicase, which is localized to mitochondria and whose in vitro ATPase activity is stimulated with mitochondrial RNA.	ATP-dependent RNA helicase;(source:Araport11)
AT4G14800.1	protein_coding	20S proteasome beta subunit D2	Encodes 20S proteasome beta subunit PBD2 (PBD2).	20S proteasome beta subunit D2;(source:Araport11)
AT4G16900.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16920.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16930.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain-containing protein		Toll-Interleukin-Resistance (TIR) domain-containing protein;(source:Araport11)
AT4G16940.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	Redundant function together with SIKIC2 and 3 in SNC1-mediated autoimmunity. Protein levels controlled by MUSE1 and MUSE2.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16210.1	protein_coding	enoyl-CoA hydratase/isomerase A		enoyl-CoA hydratase/isomerase A;(source:Araport11)
AT4G16950.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.Redundant function together with SIKIC1 and 3 in SNC1-mediated autoimmunity. Protein levels controlled by MUSE1 and MUSE2.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16220.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT4G16960.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	Redundant function together with SIKIC1 and 2 in SNC1-mediated autoimmunity. Protein levels controlled by MUSE1 and MUSE2.	disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT4G16230.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT4G16970.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G15510.1	protein_coding	Photosystem II reaction center PsbP family protein	A nuclear-encoded thylakoid lumenal protein that is associated with photosystem I (PSI) but is not an integral subunit of PSI.  It is an PSI assembly factor that assists the proper folding and integration of PsaB and PsaA into the thylakoid membrane. It is involved in the assembly of PSI reaction center heterodimer core.	Photosystem II reaction center PsbP family protein;(source:Araport11)
AT4G16240.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G15520.1	protein_coding	tRNA/rRNA methyltransferase (SpoU) family protein		tRNA/rRNA methyltransferase (SpoU) family protein;(source:Araport11)
AT4G16250.1	protein_coding	phytochrome D	Encodes a phytochrome photoreceptor with a function similar to that of phyB that absorbs the red/far-red part of the light spectrum and is involved in light responses.  It cannot compensate for phyB loss in Arabidopsis but can substitute for tobacco phyB in vivo.	phytochrome D;(source:Araport11)
AT4G16990.1	protein_coding	disease resistance protein (TIR-NBS class), putative		disease resistance protein (TIR-NBS class);(source:Araport11)
AT4G15530.1	protein_coding	pyruvate orthophosphate dikinase	The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues.	pyruvate orthophosphate dikinase;(source:Araport11)
AT4G16260.1	protein_coding	Glycosyl hydrolase superfamily protein	Encodes a putative beta-1,3-endoglucanase that interacts with the 30C02 cyst nematode effector. May play a role in host defense.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT4G17000.1	protein_coding			neurofilament heavy protein;(source:Araport11)
AT4G14810.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G15540.1	protein_coding	EamA-like transporter family	nodulin MtN21-like transporter family protein The mRNA is cell-to-cell mobile.	EamA-like transporter family;(source:Araport11)
AT4G16270.1	protein_coding	Peroxidase superfamily protein	Encodes a class III peroxidase that is genetically redundant with PRX9, expressed in the tapetum, and essential for proper anther and pollen development.	peroxidase superfamily protein;(source:Araport11)
AT4G14820.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G15550.1	protein_coding	indole-3-acetate beta-D-glucosyltransferase	UDP-glucose:indole-3-acetate beta-D-glucosyltransferase	indole-3-acetate beta-D-glucosyltransferase;(source:Araport11)
AT4G16280.1	protein_coding	RNA binding;abscisic acid binding	Involved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha, beta, delta and gamma) are produced by alternative splicing. Involved in RNA-mediated chromatin silencing. At one point it was believed to act as an abscisic acid receptor but the paper describing that function was retracted.	flowering time control protein FCA;(source:Araport11)
AT4G14830.1	protein_coding			17.6 kDa class II heat shock protein;(source:Araport11)
AT4G15560.1	protein_coding	Deoxyxylulose-5-phosphate synthase	Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis	Deoxyxylulose-5-phosphate synthase;(source:Araport11)
AT4G14840.1	protein_coding			spindle assembly abnormal protein;(source:Araport11)
AT4G15570.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development. The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G14850.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes a pentatricopeptide (PPR) protein that binds single-stranded RNA. The N-terminal portion of the protein can localize to the mitochondria. Mutations in this gene make plants less sensitive to inhibitors of the MEP and MVA pathways of isoprenoid biosynthesis and increase the activity of HMG CoA reductase.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G14860.1	protein_coding	ovate family protein 11		ovate family protein 11;(source:Araport11)
AT4G15590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.5e-50 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT4G14870.1	protein_coding	secE/sec61-gamma protein transport protein	Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. The mRNA is cell-to-cell mobile.	secE/sec61-gamma protein transport protein;(source:Araport11)
AT4G14880.1	protein_coding	O-acetylserine (thiol) lyase (OAS-TL) isoform A1	Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma.  Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA. Lines carrying semi-dominant mutations exhibit early senescence. Required for pollen tube growth and/or fertilization.	O-acetylserine (thiol) lyase (OAS-TL) isoform A1;(source:Araport11)
AT4G14890.1	protein_coding	2Fe-2S ferredoxin-like superfamily protein		2Fe-2S ferredoxin-like superfamily protein;(source:Araport11)
AT4G14900.1	protein_coding	FRIGIDA-like protein		FRIGIDA-like protein;(source:Araport11)
AT4G17010.1	protein_coding			transcription factor IIIB;(source:Araport11)
AT4G17020.1	protein_coding	transcription factor-related		transcription factor-like protein;(source:Araport11)
AT4G17030.1	protein_coding	expansin-like B1	Encodes EXLB1 (expansin-like B1), a member of the expansin family.	expansin-like B1;(source:Araport11)
AT4G17040.1	protein_coding	CLP protease R subunit 4	HON5 (At4g17040) encodes the ClpR4 subunit of the chloroplast-localized Clp protease complex. hon mutations disturb plastid protein homeostasis, thereby activating plastid signaling and inducing stress acclimatization.	CLP protease R subunit 4;(source:Araport11)
AT4G16310.1	protein_coding	LSD1-like 3	FAD-dependent lysine-specific histone demethylase involved in the control of flowering time.	LSD1-like 3;(source:Araport11)
AT4G17050.1	protein_coding	ureidoglycine aminohydrolase	Encodes a protein with ureidoglycine aminohydrolase activity.	ureidoglycine aminohydrolase;(source:Araport11)
AT4G16330.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G17070.1	protein_coding	peptidyl-prolyl cis-trans isomerases		peptidyl-prolyl cis-trans isomerase;(source:Araport11)
AT4G15610.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G16340.1	protein_coding	guanyl-nucleotide exchange factors;GTPase binding;GTP binding	Encodes SPIKE1 (SPK1), the lone DOCK family guanine nucleotide exchange factor (GEF) in Arabidopsis.  SPK1 is a peripheral membrane protein that accumulates at, and promotes the formation of, a specialized domain of the endoplasmic reticulum (ER) termed the ER exit site (ERES). SPK1 promotes polarized growth and cell-cell adhesion in the leaf epidermis. Mutant has seedling lethal; cotyledon, leaf-shape, trichome defects.	guanyl-nucleotide exchange factors;(source:Araport11)
AT4G17080.1	protein_coding	Histone H3 K4-specific methyltransferase SET7/9 family protein		Histone H3 K4-specific methyltransferase SET7/9 family protein;(source:Araport11)
AT4G15620.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G16350.1	protein_coding	calcineurin B-like protein 6	Calcium sensor protein. Binds CIPK14.	calcineurin B-like protein 6;(source:Araport11)
AT4G17090.1	protein_coding	chloroplast beta-amylase	Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).BAM3 activity declines 2 and 4 days after start of cold stress despite an increase in transcript levels. BAM3 activity has a lower temperature optimum than BAM1 (PMID:25293962).	chloroplast beta-amylase;(source:Araport11)
AT4G15630.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G16360.1	protein_coding	5'-AMP-activated protein kinase beta-2 subunit protein	Component of the regulatory subunit of SNF1-related protein kinase. As part of the regulatory complex it binds maltose which promotes kinase activity.	SNF1-related protein kinase regulatory subunit beta-2;(source:Araport11)
AT4G17100.1	protein_coding			poly(U)-specific endoribonuclease-B protein;(source:Araport11)
AT4G15640.1	protein_coding			adenylyl cyclase;(source:Araport11)
AT4G16370.1	protein_coding	oligopeptide transporter	Encodes a phloem-specific iron transporter that is essential for systemic iron signaling and redistribution of iron and cadmium.  It loads iron into the phloem, facilitates iron recirculation from the xylem to the phloem, and regulates both shoot-to-root iron signaling and iron redistribution from mature to developing tissues.	oligopeptide transporter;(source:Araport11)
AT4G15650.1	protein_coding			kinase-like protein;(source:Araport11)
AT4G15660.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family.	Thioredoxin superfamily protein;(source:Araport11)
AT4G16390.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein	Encodes a pentatricopeptide repeat protein, SVR7 (SUPPRESSOR OF VARIEGATION7), required for FtsH-mediated chloroplast biogenesis. It is involved in accumulation and translation of chloroplast ATP synthase subunits.	pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT4G15670.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family.	Thioredoxin superfamily protein;(source:Araport11)
AT4G16400.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G15680.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family.	Thioredoxin superfamily protein;(source:Araport11)
AT4G15690.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2 and suppress ORA59 promoter activity.	Thioredoxin superfamily protein;(source:Araport11)
AT4G15700.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family.	Thioredoxin superfamily protein;(source:Araport11)
AT4G17140.1	protein_coding	pleckstrin homology (PH) domain-containing protein		pleckstrin homology (PH) domain-containing protein;(source:Araport11)
AT4G16410.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G17150.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G16420.1	protein_coding	homolog of yeast ADA2 2B	Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations.	ADA2 2B;(source:Araport11)
AT4G17160.1	protein_coding	RAB GTPase homolog B1A		RAB GTPase homolog B1A;(source:Araport11)
AT4G16430.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	bHLH3 interacts with JAZ proteins, and functions redundantly with bHLH13, bHLH14 and bHLH17 to negatively regulate jasmonate responses.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G17170.1	protein_coding	RAB GTPase homolog B1C	member of RAB gene family	RAB GTPase homolog B1C;(source:Araport11)
AT4G15710.1	protein_coding			cystatin-like protein;(source:Araport11)
AT4G16440.1	protein_coding	ferredoxin hydrogenases	Encodes a [FeFe]-hydrogenase-like protein named Gollum (for Growth in different Oxygen LeveLs in&#64258;Uences Morphogenesis).  Heterologous expression of Gollum in E. coli indicates that it probably contains two [Fe-S] clusters with different magnetic properties. Sequence alignment analysis indicates that these two clusters would be topologically equivalent to the mesial and proximal [Fe-S] centers of [FeFe]-hydrogenases. Knockdown mutants (RNAi) show a dwarf phenotype at the normal atmospheric partial oxygen pressure of 21 kPa.  This dwarf phenotype could be rescued by growing the plant under low oxygen pressure (5kPa), suggesting a role for this gene in oxygen sensing.	ferredoxin hydrogenase;(source:Araport11)
AT4G17180.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT4G15720.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G16450.1	protein_coding			NADH-ubiquinone oxidoreductase;(source:Araport11)
AT4G17190.1	protein_coding	farnesyl diphosphate synthase 2	Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis.  Its mRNA is most abundantly expressed in flowers.	farnesyl diphosphate synthase 2;(source:Araport11)
AT4G15730.1	protein_coding	CW-type Zinc Finger		CW-type Zinc Finger;(source:Araport11)
AT4G16460.1	protein_coding			zinc finger CCCH domain protein;(source:Araport11)
AT4G17200.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G15740.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT4G16470.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G15750.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT4G16480.1	protein_coding	inositol transporter 4	Encodes a high affinity H+:<i>myo</i>-inositol symporter. The only other compound shown to be transported was pinitol, a methylated derivative of <i>myo</i>-inositol. The mRNA is cell-to-cell mobile.	inositol transporter 4;(source:Araport11)
AT4G15760.1	protein_coding	monooxygenase 1	Encodes a protein with similarity to monooxygenases that are known to degrade salicylic acid (SA).	monooxygenase 1;(source:Araport11)
AT4G16490.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G15770.1	protein_coding	RNA binding		RNA binding protein;(source:Araport11)
AT4G16500.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT4G15780.1	protein_coding	vesicle-associated membrane protein 724	member of VAMP72 Gene Family	vesicle-associated membrane protein 724;(source:Araport11)
AT4G15790.1	protein_coding			uveal autoantigen with coiled-coil/ankyrin;(source:Araport11)
AT4G15800.1	protein_coding	ralf-like 33	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. The mRNA is cell-to-cell mobile.	ralf-like 33;(source:Araport11)
AT4G17210.1	protein_coding	Plant protein of unknown function (DUF827)		weak chloroplast movement under blue light protein (DUF827);(source:Araport11)
AT4G17220.1	protein_coding	microtubule-associated proteins 70-5	Encodes a microtubule associated protein (MAP70-5). Regulates secondary wall patterning in wood cells.  Expressed in all tissues.	microtubule-associated proteins 70-5;(source:Araport11)
AT4G17230.1	protein_coding	SCARECROW-like 13	Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family. Regulated by heat shock.	SCARECROW-like 13;(source:Araport11)
AT4G17240.1	protein_coding			structural maintenance of chromosomes protein;(source:Araport11)
AT4G16510.1	protein_coding	YbaK/aminoacyl-tRNA synthetase-associated domain		YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein;(source:Araport11)
AT4G17250.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G16520.1	protein_coding	Ubiquitin-like superfamily protein	Autophagy protein.	Ubiquitin-like superfamily protein;(source:Araport11)
AT4G17260.1	protein_coding	Lactate/malate dehydrogenase family protein		Lactate/malate dehydrogenase family protein;(source:Araport11)
AT4G16530.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein;(source:Araport11)
AT4G17270.1	protein_coding	Mo25 family protein		Mo25 family protein;(source:Araport11)
AT4G16540.1	protein_coding	Heat shock protein HSP20/alpha crystallin family		Heat shock protein HSP20/alpha crystallin family;(source:Araport11)
AT4G15810.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G17280.1	protein_coding	Auxin-responsive family protein		Auxin-responsive family protein;(source:Araport11)
AT4G16550.1	protein_coding	HSP20-like chaperone	HSP20-like chaperone, expression is induced  by stress.	HSP20-like chaperone;(source:Araport11)
AT4G15820.1	protein_coding			ABC subfamily C protein;(source:Araport11)
AT4G17300.1	protein_coding	Class II aminoacyl-tRNA and biotin synthetases superfamily protein	Asparaginyl-tRNA synthetase protein involved in amino acid activation/protein synthesis.	Class II aminoacyl-tRNA and biotin synthetases superfamily protein;(source:Araport11)
AT4G16560.1	protein_coding	HSP20-like chaperone		HSP20-like chaperone;(source:Araport11)
AT4G15830.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G17310.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G16570.1	protein_coding	protein arginine methyltransferase 7		protein arginine methyltransferase 7;(source:Araport11)
AT4G15840.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT4G16580.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT4G15850.1	protein_coding	RNA helicase 1	plant DEAD box-like RNA helicase.	RNA helicase 1;(source:Araport11)
AT4G16590.1	protein_coding	cellulose synthase-like A01	encodes a gene similar to cellulose synthase	cellulose synthase-like A01;(source:Araport11)
AT4G15860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.3e-43 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT4G16600.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein		Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT4G15870.1	protein_coding	terpene synthase 1	encodes a putative terpene synthase	terpene synthase 1;(source:Araport11)
AT4G15880.1	protein_coding	Cysteine proteinases superfamily protein	EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering.   Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development. The mRNA is cell-to-cell mobile.	Cysteine proteinases superfamily protein;(source:Araport11)
AT4G15890.1	protein_coding	binding	CAP-3D is a subunit of condensin. It a target of MMD1 regulation and also involved in meiotic chromosome condensation. Mutants have reduced fertility. Required for the correct spatial relationship between centromeres and rDNA arrays.	binding protein;(source:Araport11)
AT4G15900.1	protein_coding	pleiotropic regulatory locus 1	Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear  WD40 protein that is imported into the nucleus.  Essential for plant innate immunity.  Interacts with MOS4 and AtCDC5. It is also predicted to have two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase, and may affect the stability of AKIN10.	pleiotropic regulatory locus 1;(source:Araport11)
AT4G17330.1	protein_coding	G2484-1 protein	gene of unknown function expressed in seedlings, flower buds and stems	G2484-1 protein;(source:Araport11)
AT4G17340.1	protein_coding	tonoplast intrinsic protein 2;2		tonoplast intrinsic protein 2;(source:Araport11)
AT4G17350.1	protein_coding	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region	FORKED-LIKE family member, part of Group 3 (Group 1 consists of FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT4G17360.1	protein_coding	Formyl transferase	encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.	Formyl transferase;(source:Araport11)
AT4G16610.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT4G17370.1	protein_coding	Oxidoreductase family protein		Oxidoreductase family protein;(source:Araport11)
AT4G16620.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G17380.1	protein_coding	MUTS-like protein 4	Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination.	MUTS-like protein 4;(source:Araport11)
AT4G16630.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT4G17390.1	protein_coding	Ribosomal protein L23/L15e family protein		Ribosomal protein L23/L15e family protein;(source:Araport11)
AT4G16640.1	protein_coding	Matrixin family protein		Matrixin family protein;(source:Araport11)
AT4G17410.1	protein_coding	DWNN domain, a CCHC-type zinc finger	PQT3 is a nuclear localized E3 ligase involved in negative regulation of stress tolerance.PRMT4b is a substrate of PQT3.	DWNN domain, a CCHC-type zinc finger;(source:Araport11)
AT4G16650.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT4G32540.1	protein_coding	Flavin-binding monooxygenase family protein	Mutant has elevated levels of free IAA in dominant mutant allele; Flavin Monooxygenase-Like Enzyme; Auxin Biosynthesis	Flavin-binding monooxygenase family protein;(source:Araport11)
AT4G32551.1	protein_coding	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain	LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.	transcriptional corepressor LEUNIG;(source:Araport11)
AT4G32560.1	protein_coding	paramyosin-related		paramyosin-like protein;(source:Araport11)
AT4G32530.1	protein_coding	ATPase, F0/V0 complex, subunit C protein		ATPase, F0/V0 complex, subunit C protein;(source:Araport11)
AT4G25670.1	protein_coding			stress response NST1-like protein;(source:Araport11)
AT4G25680.1	protein_coding	PPPDE putative thiol peptidase family protein		PPPDE putative thiol peptidase family protein;(source:Araport11)
AT4G25690.1	protein_coding			stress response NST1-like protein;(source:Araport11)
AT4G25700.1	protein_coding	beta-hydroxylase 1	Converts beta-carotene to zeaxanthin via cryptoxanthin.	beta-hydroxylase 1;(source:Araport11)
AT4G25630.1	protein_coding	fibrillarin 2	encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. The mRNA is cell-to-cell mobile.	fibrillarin 2;(source:Araport11)
AT4G25720.1	protein_coding	glutaminyl cyclase	This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.	glutaminyl cyclase;(source:Araport11)
AT4G25710.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G25640.1	protein_coding	detoxifying efflux carrier 35	Encodes a multidrug and toxin efflux family transporter. Involved in flavonoid metabolism, affecting Root growth, seed development and germination, and pollen development, release and viability.	detoxifying efflux carrier 35;(source:Araport11)
AT4G25650.1	protein_coding	ACD1-like	Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.	ACD1-like protein;(source:Araport11)
AT4G25660.1	protein_coding	PPPDE putative thiol peptidase family protein		PPPDE putative thiol peptidase family protein;(source:Araport11)
AT4G26450.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G26460.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G26400.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G26410.1	protein_coding	Uncharacterised conserved protein UCP022280	Encodes a protein predicted to have a 3-stranded helical structure that interacts with both AtRGS1 and AtHXK1 in planta and is required for some glucose-regulated gene expression.	chromosome-associated kinesin;(source:Araport11)
AT4G26420.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	A member of the Arabidopsis SABATH methyltransferase gene family.  Encodes GAMT1, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs).  Expressed most highly in the siliques during seed development. SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G26430.1	protein_coding	COP9 signalosome subunit 6B	one of two genes encoding subunit 6 of COP9 signalosome complex	COP9 signalosome subunit 6B;(source:Araport11)
AT4G26510.1	protein_coding	uridine kinase-like 4	One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 4;(source:Araport11)
AT4G26440.1	protein_coding	WRKY DNA-binding protein 34	member of WRKY Transcription Factor; Group I	WRKY DNA-binding protein 34;(source:Araport11)
AT4G26540.1	protein_coding	Leucine-rich repeat receptor-like protein kinase family protein		Leucine-rich repeat receptor-like protein kinase family protein;(source:Araport11)
AT4G27200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.7e-36 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT4G27210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.6e-249 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT4G27290.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT4G27220.1	protein_coding	NB-ARC domain-containing disease resistance protein		NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT4G27300.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT4G27230.1	protein_coding	histone H2A 2	Encodes HTA2, a histone H2A protein.	histone H2A 2;(source:Araport11)
AT4G27310.1	protein_coding	B-box type zinc finger family protein	Encodes a B-box domain protein that negatively regulates photomorphogenic development by interfering with the binding of the transcription factor HY5 to target gene promoters. Degradation  of  BBX28 in darkness is dependent on COP1 and occurs via the 26S proteasome  pathway. BBX28 acts as a key factor in the COP1-HY5 regulatory hub by maintaining proper HY5 activity to ensure normal photomorphogenic development in plants.	B-box type zinc finger family protein;(source:Araport11)
AT4G27240.1	protein_coding	zinc finger (C2H2 type) family protein		zinc finger (C2H2 type) family protein;(source:Araport11)
AT4G27250.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G27260.1	protein_coding	Auxin-responsive GH3 family protein	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. It is involved in camalexin biosynthesis via conjugating indole-3-carboxylic acid (ICA) and cysteine (Cys). The mRNA is cell-to-cell mobile.	Auxin-responsive GH3 family protein;(source:Araport11)
AT4G27270.1	protein_coding	Quinone reductase family protein		Quinone reductase family protein;(source:Araport11)
AT4G27280.1	protein_coding	Calcium-binding EF-hand family protein	EF-hand Ca2 + -binding protein, which is a Ca2+-dependent transducer of auxin-regulated gene expression and interacts with ICR1.	Calcium-binding EF-hand family protein;(source:Araport11)
AT4G25520.1	protein_coding	SEUSS-like 1		SEUSS-like 1;(source:Araport11)
AT4G25530.1	protein_coding	FLOWERING WAGENINGEN	Encodes a homeodomain-containing transcription factor that controls flowering.  FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.	FLOWERING WAGENINGEN;(source:Araport11)
AT4G25620.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G25540.1	protein_coding	homolog of DNA mismatch repair protein MSH3	encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).	homolog of DNA mismatch repair protein MSH3;(source:Araport11)
AT4G25550.1	protein_coding	Cleavage/polyadenylation specificity factor, 25kDa subunit		Cleavage/polyadenylation specificity factor, 25kDa subunit;(source:Araport11)
AT4G25560.1	protein_coding	myb domain protein 18	LAF1 is a R2R3-MYB transcription factor and positive regulator of the phyA photoresponse. Interaction of LAF1 with HFR1 stabilize the proteins against ubiquitination by COP1(AT2G32950) and subsequent degrations. Mutants have an elongated hypocotyl specifically under far-red light but retain wild-type responses to other light wavelengths.	myb domain protein 18;(source:Araport11)
AT4G25570.1	protein_coding	Cytochrome b561/ferric reductase transmembrane protein family	Encodes cytochrome b561.	Cytochrome b561/ferric reductase transmembrane protein family;(source:Araport11)
AT4G25580.1	protein_coding	CAP160 protein		CAP160 protein;(source:Araport11)
AT4G25590.1	protein_coding	actin depolymerizing factor 7		actin depolymerizing factor 7;(source:Araport11)
AT4G25600.1	protein_coding	Oxoglutarate/iron-dependent oxygenase		Oxoglutarate/iron-dependent oxygenase;(source:Araport11)
AT4G25610.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT4G30760.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT4G30680.1	protein_coding	Initiation factor eIF-4 gamma, MA3		Initiation factor eIF-4 gamma, MA3;(source:Araport11)
AT4G30770.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT4G30690.1	protein_coding	Translation initiation factor 3 protein	SVR9-LIKE1 (SVR9L1)	Translation initiation factor 3 protein;(source:Araport11)
AT4G30780.1	protein_coding			ATP-dependent DNA helicase;(source:Araport11)
AT4G30700.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes a pentatricopeptide repeat protein involved in mitochondrial RNA editing.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G30790.1	protein_coding		Encodes autophagy-related 2 (ATG11)	autophagy-like protein;(source:Araport11)
AT4G30710.1	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT4G30720.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein	Encodes a putative oxidoreductase/electron carrier detected in the chloroplast stroma that is essential to ensure a correct electron flow through the photosynthetic chain and, hence, photosynthesis efficiency and normal growth. Mutations in the Col-0 allele result in pale green pigmentation and defective growth.	FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT4G30730.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G30660.1	protein_coding	Low temperature and salt responsive protein family		Low temperature and salt responsive protein family;(source:Araport11)
AT4G30750.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G30740.1	protein_coding			QWRF motif protein;(source:Araport11)
AT4G30670.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT4G22150.1	protein_coding	plant UBX domain-containing protein 3	Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX3)	UBA/UBX domain protein;(source:Araport11)
AT4G22240.1	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT4G22160.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G22250.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G22170.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT4G22340.1	protein_coding	cytidinediphosphate diacylglycerol synthase 2		cytidinediphosphate diacylglycerol synthase 2;(source:Araport11)
AT4G22260.1	protein_coding	Alternative oxidase family protein	Similar to mitochondrial alternative oxidase.  im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.	Alternative oxidase family protein;(source:Araport11)
AT4G22180.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT4G22350.1	protein_coding	Ubiquitin C-terminal hydrolases superfamily protein		Ubiquitin C-terminal hydrolases superfamily protein;(source:Araport11)
AT4G22270.1	protein_coding	Protein of unknown function (DUF3537)	Encodes a plasma membrane protein involved in the positive regulation of organ size development.  Overexpression results in organ size enlargement.	transmembrane protein, putative (DUF3537);(source:Araport11)
AT4G22190.1	protein_coding			serine/arginine repetitive matrix-like protein;(source:Araport11)
AT4G22360.1	protein_coding	SWIB complex BAF60b domain-containing protein		SWIB complex BAF60b domain-containing protein;(source:Araport11)
AT4G22280.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G22200.1	protein_coding	potassium transport 2/3	Encodes AKT2, a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation.  Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant.  The channel can coassemble with another K+ channel, KAT1, in vitro.  In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel.  In the phloem, it regulates the sucrose/H+ symporters via the phloem potential.  AKT2 belongs to the Shaker family K+ channels which include the following groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).	potassium transport 2/3;(source:Araport11)
AT4G22370.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G22290.1	protein_coding	Ubiquitin-specific protease family C19-related protein	Paralog of SHOU4-like. Predicted transmembrane protein.	Ubiquitin-specific protease family C19-related protein;(source:Araport11)
AT4G22210.1	protein_coding	low-molecular-weight cysteine-rich 85	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 85;(source:Araport11)
AT4G22300.1	protein_coding	carboxylesterases	Formerly known as SOBER1, this locus was split in the TAIR10 annotation into AT4G22300 and AT4G22305.  This locus is now known as TIPSY1 and AT4G22305 corresponds to SOBER1.	carboxylesterase;(source:Araport11)
AT4G22220.1	protein_coding	SufE/NifU family protein	Encodes a mitochondrial protein similar to E.coli IscU.  In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.	SufE/NifU family protein;(source:Araport11)
AT4G22310.1	protein_coding	Uncharacterised protein family (UPF0041)		Uncharacterized protein family (UPF0041);(source:Araport11)
AT4G22230.1	protein_coding	Arabidopsis defensin-like protein	Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT4G22320.1	protein_coding			golgin family A protein;(source:Araport11)
AT4G22330.1	protein_coding	Alkaline phytoceramidase (aPHC)	AtCES1 encodes a nuclear and endoplasmic reticulum localized Acyl-CoA independent ceramide synthase that is involved in sphingolipid metabolism, disease resistance, nutrient limitation, and response to salt stress. Facilitates adaptation to environmental stresses by regulating autophagy.	Alkaline phytoceramidase (aPHC);(source:Araport11)
AT4G02160.1	protein_coding			cotton fiber protein;(source:Araport11)
AT4G02080.1	protein_coding	secretion-associated RAS super family 2	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	secretion-associated RAS super family 2;(source:Araport11)
AT4G02170.1	protein_coding			cotton fiber protein;(source:Araport11)
AT4G02180.1	protein_coding	DC1 domain-containing protein		DC1 domain-containing protein;(source:Araport11)
AT4G02010.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G02090.1	protein_coding			multidrug resistance protein ABC transporter family protein;(source:Araport11)
AT4G02020.1	protein_coding	SET domain-containing protein	Encodes a polycomb group protein.  Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF).  The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA  in controlling seed initiation by helping to suppress central cell  nucleusendosperm proliferation within the FG.	SET domain-containing protein;(source:Araport11)
AT4G02100.1	protein_coding	Heat shock protein DnaJ with tetratricopeptide repeat		Heat shock protein DnaJ with tetratricopeptide repeat-containing protein;(source:Araport11)
AT4G02190.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G02030.1	protein_coding	Vps51/Vps67 family (components of vesicular transport) protein		Vps51/Vps67 family (components of vesicular transport) protein;(source:Araport11)
AT4G02110.1	protein_coding	transcription coactivators		transcription coactivator;(source:Araport11)
AT4G02040.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G02120.1	protein_coding	CTP synthase family protein	Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT4G02050.1	protein_coding	sugar transporter protein 7	STP7 is a monosaccharide/H+ symporter that transports arabinose and xylose.	sugar transporter protein 7;(source:Araport11)
AT4G02130.1	protein_coding	galacturonosyltransferase 6	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 6;(source:Araport11)
AT4G02060.1	protein_coding	Minichromosome maintenance (MCM2/3/5) family protein	Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and  endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the  cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.	Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT4G02140.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G02070.1	protein_coding	MUTS homolog 6	encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.	MUTS homolog 6;(source:Araport11)
AT4G02150.1	protein_coding	ARM repeat superfamily protein	Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	ARM repeat superfamily protein;(source:Araport11)
AT4G02590.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G02520.1	protein_coding	glutathione S-transferase PHI 2	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.	glutathione S-transferase PHI 2;(source:Araport11)
AT4G02600.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO1 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and in papillae, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT4G02690.1	protein_coding	Bax inhibitor-1 family protein	Stress induced membrane protein. Mutants show enhanced cell death under stress.	Bax inhibitor-1 family protein;(source:Araport11)
AT4G02530.1	protein_coding	chloroplast thylakoid lumen protein	MPH2 is a green lineage-specific thylakoid lumen protein required for photosynthetic acclimation of PSII to stressful light conditions (PMID:28874535).	chloroplast thylakoid lumen protein;(source:Araport11)
AT4G02610.1	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT4G02700.1	protein_coding	sulfate transporter 3;2		sulfate transporter 3;(source:Araport11)
AT4G02540.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G02620.1	protein_coding	vacuolar ATPase subunit F family protein		vacuolar ATPase subunit F family protein;(source:Araport11)
AT4G02710.1	protein_coding	Kinase interacting (KIP1-like) family protein		Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT4G02630.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G02550.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT4G02560.1	protein_coding	Homeodomain-like superfamily protein	Encodes a nuclear localized protein with similarity to transcriptional regulators. Recessive mutants are late flowering. Expression of LFY is reduced in LD mutants. LD has been reported to exhibit prion like behavior in yeast but it remains to be determined if such activity exists during normal plant development.	Homeodomain-like superfamily protein;(source:Araport11)
AT4G02640.1	protein_coding	bZIP transcription factor family protein	Encodes a basic leucine zipper (bZIP) transcription factor AtbZIP10.  AtbZIP10 shuttles between the nucleus and the cytoplasm.  It binds consensus G- and C-box DNA sequences.  AtbZIP10 acts antagonistically with LSD1 in both pathogen-induced hypersensitive response and basal defense responses.	bZIP transcription factor family protein;(source:Araport11)
AT4G02570.1	protein_coding	cullin 1	Encodes a cullin that is a component of  SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl.  Heterozygotes display a variety of phenotypes consistent with impaired auxin response.	cullin 1;(source:Araport11)
AT4G02650.1	protein_coding	ENTH/ANTH/VHS superfamily protein	Phosphatidylinositol binding clathrin assembly protein 5A/B are recent paralogs with overlapping functions in  recycling ANXUR proteins to the pollen tube membrane.	ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT4G02580.1	protein_coding	NADH-ubiquinone oxidoreductase 24 kDa subunit, putative		NADH-ubiquinone oxidoreductase 24 kDa subunit;(source:Araport11)
AT4G02660.1	protein_coding	Beige/BEACH domain ;WD domain, G-beta repeat protein		Beige/BEACH and WD40 domain-containing protein;(source:Araport11)
AT4G02670.1	protein_coding	indeterminate(ID)-domain 12		indeterminate(ID)-domain 12;(source:Araport11)
AT4G02680.1	protein_coding	ETO1-like 1	Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL1 also interacts with and inhibits the activity of ACS5.	ETO1-like 1;(source:Araport11)
AT4G08290.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G08210.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT4G08300.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G08220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.3e-67 P-value blast match to Q9SUF8 /145-308 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G08310.1	protein_coding			DNA ligase;(source:Araport11)
AT4G08230.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G08240.1	protein_coding			histone-lysine N-methyltransferase;(source:Araport11)
AT4G08250.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT4G08170.1	protein_coding	Inositol 1,3,4-trisphosphate 5/6-kinase family protein		Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11)
AT4G08180.1	protein_coding	OSBP(oxysterol binding protein)-related protein 1C		OSBP(oxysterol binding protein)-related protein 1C;(source:Araport11)
AT4G08260.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT4G08190.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G08270.1	protein_coding			glutathione S-transferase T3-like protein;(source:Araport11)
AT4G08200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43722.1);(source:TAIR10)
AT4G08280.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT4G22670.1	protein_coding	HSP70-interacting protein 1	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones. The mRNA is cell-to-cell mobile.	HSP70-interacting protein 1;(source:Araport11)
AT4G22680.1	protein_coding	myb domain protein 85	Encodes a putative transcription factor (MYB85).	myb domain protein 85;(source:Araport11)
AT4G22760.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G22690.1	protein_coding	cytochrome P450, family 706, subfamily A, polypeptide 1	member of CYP706A The mRNA is cell-to-cell mobile.	cytochrome P450, family 706, subfamily A, polypeptide 1;(source:Araport11)
AT4G22770.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT4G22700.1	protein_coding	LOB domain-containing protein 32		LOB domain-containing protein 32;(source:Araport11)
AT4G22780.1	protein_coding	ACT domain repeat 7	Member of a family of ACT domain containing proteins . ACT domains are involved in amino acid binding .	ACT domain repeat 7;(source:Araport11)
AT4G22710.1	protein_coding	cytochrome P450, family 706, subfamily A, polypeptide 2	member of CYP706A	cytochrome P450, family 706, subfamily A, polypeptide 2;(source:Araport11)
AT4G22790.1	protein_coding	MATE efflux family protein	Encodes a plasma membrane localized MATE type transporter that is involved in CO2 signaling during stomatal aperture regulation. RHC1 regulates HT1 which phosphorylates OST1, a kinase that regulates the SLAC1 anion channel and thus stomatal closing.	MATE efflux family protein;(source:Araport11)
AT4G22720.1	protein_coding	Actin-like ATPase superfamily protein		Actin-like ATPase superfamily protein;(source:Araport11)
AT4G22730.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G22810.1	protein_coding	Predicted AT-hook DNA-binding family protein		Putative AT-hook DNA-binding family protein;(source:Araport11)
AT4G22740.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G22750.1	protein_coding	DHHC-type zinc finger family protein	Encodes a protein S-acyltransferase that, together with PAT14, cooperatively regulates leaf senescence.	DHHC-type zinc finger protein;(source:Araport11)
AT4G10720.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G10730.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G10740.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G10750.1	protein_coding	Phosphoenolpyruvate carboxylase family protein		Phosphoenolpyruvate carboxylase family protein;(source:Araport11)
AT4G10760.1	protein_coding	mRNAadenosine methylase	Encodes a member of a core set of mRNA m6A writer proteins and is required for N6-adenosine methylation of mRNA.	mRNAadenosine methylase;(source:Araport11)
AT4G10770.1	protein_coding	oligopeptide transporter 7	oligopeptide transporter	oligopeptide transporter 7;(source:Araport11)
AT4G10780.1	protein_coding	LRR and NB-ARC domains-containing disease resistance protein		LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT4G10700.1	protein_coding			F-box/kelch-repeat protein;(source:Araport11)
AT4G10790.1	protein_coding	UBX domain-containing protein	Encodes a member of the plant UBX-domain containing (PUX) protein family. It is an integral lipid droplet (LD) protein that associates with a subpopulation of LDs during seed germination. It likely acts as an adaptor recruiting CDC48A to ubiquitinated oleosins, thus facilitating the dislocation of oleosins from LDs by the segregase activity of CDC48A.	UBX domain-containing protein;(source:Araport11)
AT4G10710.1	protein_coding	global transcription factor C	encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC.	global transcription factor C;(source:Araport11)
AT4G35140.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G35150.1	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT4G35160.1	protein_coding	O-methyltransferase family protein	Encodes a cytosolic N-acetylserotonin O-methyltransferase that can convert N-acetylserotonin to melatonin and serotonin to 5-methoxytryptamine in the process of melatonin synthesis.  It does not have caffeic acid O- methyltransferase activity.	O-methyltransferase family protein;(source:Araport11)
AT4G35170.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT4G35180.1	protein_coding	LYS/HIS transporter 7		LYS/HIS transporter 7;(source:Araport11)
AT4G35190.1	protein_coding	Putative lysine decarboxylase family protein		Putative lysine decarboxylase family protein;(source:Araport11)
AT4G35200.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		hypothetical protein (DUF241);(source:Araport11)
AT4G35210.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		carrier protein (DUF241);(source:Araport11)
AT4G08090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.4e-12 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G27900.1	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT4G27990.1	protein_coding	YGGT family protein	One of four Arabidopsis homologs of bacterial ymlg proteins.	YGGT family protein;(source:Araport11)
AT4G27910.1	protein_coding	SET domain protein 16	Encodes a SET domain containing protein, putative H3K4 methyltransferase.	SET domain protein 16;(source:Araport11)
AT4G27920.1	protein_coding	PYR1-like 10	Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.	PYR1-like 10;(source:Araport11)
AT4G28000.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G28090.1	protein_coding	SKU5  similar 10		SKU5 similar 10;(source:Araport11)
AT4G28010.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G28100.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G27940.1	protein_coding	manganese tracking factor for mitochondrial SOD2		manganese tracking factor for mitochondrial SOD2;(source:Araport11)
AT4G28020.1	protein_coding			tRNA-thr(GGU) m(6)t(6)A37 methyltransferase;(source:Araport11)
AT4G28110.1	protein_coding	myb domain protein 41	Member of the R2R3 factor gene family. Expression is induced in response to desiccation, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion.	myb domain protein 41;(source:Araport11)
AT4G27950.1	protein_coding	cytokinin response factor 4	Encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. CRF proteins relocalize to the nucleus in response to cytokinin.	cytokinin response factor 4;(source:Araport11)
AT4G28030.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT4G27960.1	protein_coding	ubiquitin conjugating enzyme 9	ubiquitin conjugating enzyme	ubiquitin conjugating enzyme 9;(source:Araport11)
AT4G28040.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G27970.1	protein_coding	SLAC1 homologue 2	Encodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane.	SLAC1 homologue 2;(source:Araport11)
AT4G28050.1	protein_coding	tetraspanin7	Member of TETRASPANIN family	tetraspanin7;(source:Araport11)
AT4G27980.1	protein_coding	Domain of unknown function (DUF3444)		trichohyalin-like protein (DUF3444);(source:Araport11)
AT4G28060.1	protein_coding	Cytochrome c oxidase, subunit Vib family protein		Cytochrome c oxidase, subunit Vib family protein;(source:Araport11)
AT4G28070.1	protein_coding	AFG1-like ATPase family protein		AFG1-like ATPase family protein;(source:Araport11)
AT4G28080.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes REDUCED CHLOROPLAST COVERAGE 2 (REC2).  Along with REC1 and REC3 it contributes to establishing the size of the chloroplast compartment.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G20850.1	protein_coding	tripeptidyl peptidase ii	Tripeptidyl Peptidase II. Ser protease  that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene, with the smaller version missing part of the C-terminal end. Not essential, based on the lack of phenotype of a T-DNA disruption mutant.	tripeptidyl peptidase ii;(source:Araport11)
AT4G20860.1	protein_coding	FAD-binding Berberine family protein	involved in the generation of H2O2 from reduced compounds	FAD-binding Berberine family protein;(source:Araport11)
AT4G20940.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Encodes a plasma-membrane localized LRR receptor-like protein involved in both ABA and H202 mediated signaling involved in stomatal movement. TAIR10 annotation for this gene has a low confidence score (2-star). See Comments field for structural annotation by the community.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT4G20870.1	protein_coding	fatty acid hydroxylase 2	encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.	fatty acid hydroxylase 2;(source:Araport11)
AT4G21040.1	protein_coding	Dof-type zinc finger domain-containing protein		Dof-type zinc finger domain-containing protein;(source:Araport11)
AT4G20880.1	protein_coding	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)		ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2);(source:Araport11)
AT4G20960.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein	encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis	Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT4G21050.1	protein_coding	Dof-type zinc finger domain-containing protein	Encodes a transcriptional activator involved in shoot branching and silique development.	Dof-type zinc finger domain-containing protein;(source:Araport11)
AT4G20890.1	protein_coding	tubulin beta-9 chain	tubulin 9 The mRNA is cell-to-cell mobile.	tubulin beta-9 chain;(source:Araport11)
AT4G20970.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G21060.1	protein_coding	Galactosyltransferase family protein	Encodes an endomembrane system-localized, hydroxyproline-O-galactosyltransferase specific for arabinogalactan-protein biosynthesis.	Galactosyltransferase family protein;(source:Araport11)
AT4G20900.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a tetratricopeptide repeat protein required for cell cycle exit after meiosis II.ms5 mutants are male sterile, pollen tetrads undergo an extra round of division after meiosis II without chromosome replication, resulting in chromosome abnormalities.  Gene product has some similarity to SCP1, a rat synaptonemal complex protein.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G20980.1	protein_coding	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)		Eukaryotic translation initiation factor 3 subunit 7 (eIF-3);(source:Araport11)
AT4G20910.1	protein_coding	double-stranded RNA binding protein-related / DsRBD protein-related	Encodes an enhancer of hua1 and hua2 tha acts to specify reproductive organ identities and to repress A gene function. HEN1 also shares AG's non-homeotic function in controlling floral determinacy.  Mutants display corymb-like inflorescences.  HEN1 is a methyltransferase that methylates miRNAs and siRNAs on the ribose of the last nucleotide.  The 3'-end methylation probably protects the 3' ends of the small RNAs from uridylation.	double-stranded RNA binding protein-related / DsRBD protein-like protein;(source:Araport11)
AT4G20990.1	protein_coding	alpha carbonic anhydrase 4		alpha carbonic anhydrase 4;(source:Araport11)
AT4G20920.1	protein_coding	double-stranded RNA-binding domain (DsRBD)-containing protein		double-stranded RNA-binding domain (DsRBD)-containing protein;(source:Araport11)
AT4G21000.1	protein_coding	alpha carbonic anhydrase 6		alpha carbonic anhydrase 6;(source:Araport11)
AT4G20930.1	protein_coding	6-phosphogluconate dehydrogenase family protein	Encodes a 3-hydroxyisobutyrate dehydrogenase.	6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT4G21010.1	protein_coding	Transcription initiation factor TFIIE, beta subunit		Transcription initiation factor TFIIE, beta subunit;(source:Araport11)
AT4G21020.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT4G21030.1	protein_coding	Dof-type zinc finger domain-containing protein	Encodes a nuclear protein that can bind DNA in a sequence specific manner and is involved in seed coat development and shoot branching. It has been shown to activate transcription of a target gene, AtEXPA9.	Dof-type zinc finger domain-containing protein;(source:Araport11)
AT4G07570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G07580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT4G07590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.3e-17 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G07600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-166 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G02320.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT4G02330.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily	Encodes a pectin methylesterase that is sensitive to chilling stress and brassinosteroid regulation.	Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT4G02410.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT4G02340.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G02420.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT4G02350.1	protein_coding	exocyst complex component sec15B	Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. The mRNA is cell-to-cell mobile.	exocyst complex component sec15B;(source:Araport11)
AT4G02430.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G02360.1	protein_coding	Protein of unknown function, DUF538		transmembrane protein, putative (Protein of unknown function, DUF538);(source:Araport11)
AT4G02440.1	protein_coding	F-box family protein	EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus,  and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta.	F-box family protein;(source:Araport11)
AT4G02370.1	protein_coding	Protein of unknown function, DUF538		pectinesterase (Protein of unknown function, DUF538);(source:Araport11)
AT4G02450.1	protein_coding	HSP20-like chaperones superfamily protein	Encodes one of two isoforms of a co-chaperone of HSP90 that is required for root growth, in particular in the maintenance of the root meristem.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT4G02460.1	protein_coding	DNA mismatch repair protein, putative	Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination.	DNA mismatch repair protein;(source:Araport11)
AT4G02380.1	protein_coding	senescence-associated gene 21	Encodes AtLEA5 (late embryogenesis abundant like protein).  Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21).  Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses.	senescence-associated gene 21;(source:Araport11)
AT4G02390.1	protein_coding	poly(ADP-ribose) polymerase	Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .	poly(ADP-ribose) polymerase;(source:Araport11)
AT4G02400.1	protein_coding	U3 ribonucleoprotein (Utp) family protein		U3 ribonucleoprotein (Utp) family protein;(source:Araport11)
AT4G02480.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT4G01570.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G01660.1	protein_coding	ABC transporter 1	Encodes an ABC1-like protein, member of the ATH subfamily; putative ABC transporter; isolated by functional complementation of a yeast abc1 mutant The mRNA is cell-to-cell mobile.	ABC transporter 1;(source:Araport11)
AT4G01580.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT4G01670.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G01590.1	protein_coding			DNA-directed RNA polymerase III subunit;(source:Araport11)
AT4G01680.1	protein_coding	myb domain protein 55	Encodes a putative transcription factor (MYB55).	myb domain protein 55;(source:Araport11)
AT4G01600.1	protein_coding	GRAM domain family protein		GRAM domain family protein;(source:Araport11)
AT4G01690.1	protein_coding	Flavin containing amine oxidoreductase family	Encodes protoporphyrinogen oxidase (PPOX).	Flavin containing amine oxidoreductase family;(source:Araport11)
AT4G01610.1	protein_coding	Cysteine proteinases superfamily protein	Encodes a capase involved in stress induced cell death.  Activity detected in leaf and cell culture.	Cysteine proteinases superfamily protein;(source:Araport11)
AT4G01700.1	protein_coding	Chitinase family protein		Chitinase family protein;(source:Araport11)
AT4G01710.1	protein_coding	ARP2/3 complex 16 kDa subunit (p16-Arc)	belongs to the DIS(distorted) gene family. Encodes a actin polymerization factor. Involved in cell expansion of trichome.	ARP2/3 complex 16 kDa subunit (p16-Arc);(source:Araport11)
AT4G01630.1	protein_coding	expansin A17	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A17;(source:Araport11)
AT4G01720.1	protein_coding	WRKY family transcription factor	member of WRKY Transcription Factor; Group II-b	WRKY family transcription factor;(source:Araport11)
AT4G01640.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT4G01650.1	protein_coding	Polyketide cyclase / dehydrase and lipid transport protein		Polyketide cyclase / dehydrase and lipid transport protein;(source:Araport11)
AT4G01730.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT4G01740.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G08460.1	protein_coding	Protein of unknown function (DUF1644)		hypothetical protein (DUF1644);(source:Araport11)
AT4G08550.1	protein_coding	electron carriers;protein disulfide oxidoreductases		electron carrier/ protein disulfide oxidoreductase;(source:Araport11)
AT4G08470.1	protein_coding	MAPK/ERK kinase kinase 3	Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002, 7(7):301.	MAPK/ERK kinase kinase 3;(source:Araport11)
AT4G08560.1	protein_coding	pumilio 15	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 15;(source:Araport11)
AT4G08480.1	protein_coding	mitogen-activated protein kinase kinase kinase 9	Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002, 7(7):301.	mitogen-activated protein kinase kinase kinase 9;(source:Araport11)
AT4G08570.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G08490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.7e-81 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08500.1	protein_coding	MAPK/ERK kinase kinase 1	Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19). Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002, 7(7):301. Mediates cold, salt, cadmium and wounding stress signalling. Phosphorylates MEK1.	MAPK/ERK kinase kinase 1;(source:Araport11)
AT4G08510.1	protein_coding			mediator of RNA polymerase II transcription subunit-like protein;(source:Araport11)
AT4G08520.1	protein_coding	SNARE-like superfamily protein		SNARE-like superfamily protein;(source:Araport11)
AT4G08530.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	non-specific lipid-transfer-like protein;(source:Araport11)
AT4G08540.1	protein_coding	DNA-directed RNA polymerase II protein		DNA-directed RNA polymerase II protein;(source:Araport11)
AT4G09360.1	protein_coding	NB-ARC domain-containing disease resistance protein		NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT4G09450.1	protein_coding	Duplicated homeodomain-like superfamily protein		Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT4G09370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23930.1);(source:TAIR10)
AT4G09460.1	protein_coding	myb domain protein 6	Encodes myb6 DNA-binding protein. The mRNA is cell-to-cell mobile.	myb domain protein 6;(source:Araport11)
AT4G09380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.2e-75 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G09470.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT4G09390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04400.1);(source:TAIR10)
AT4G09480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.8e-45 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G09400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33230.1);(source:TAIR10)
AT4G09490.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT4G09410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-40 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G09500.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G09420.1	protein_coding	Disease resistance protein (TIR-NBS class)		Disease resistance protein (TIR-NBS class);(source:Araport11)
AT4G09510.1	protein_coding	cytosolic invertase 2	CINV2 appears to function as a neutral invertase based on the phenotype of a  cinv1(AT1G35580)/cinv2 double mutant. It is predicted to be a cytosolic enzyme. CINV1, CINV2, and possibly other cytosolic invertases may play an important role in supplying carbon from sucrose to non-photosynthetic tissues.	cytosolic invertase 2;(source:Araport11)
AT4G09430.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT4G09520.1	protein_coding	Cofactor-independent phosphoglycerate mutase		Cofactor-independent phosphoglycerate mutase;(source:Araport11)
AT4G09440.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein (DUF577);(source:Araport11)
AT4G09530.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G26600.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G26610.1	protein_coding	D6 protein kinase like 1	D6PK family kinase involved in pulse-induced phototropism but also for time-dependent second positive phototropism, and continuous light-induced hypocotyl phototropism.	D6 protein kinase like 1;(source:Araport11)
AT4G26620.1	protein_coding	Sucrase/ferredoxin-like family protein		Sucrase/ferredoxin-like family protein;(source:Araport11)
AT4G26630.1	protein_coding	DEK domain-containing chromatin associated protein	Encodes a chromatin-associated protein that specifically binds histones H3 and H4 and contributes to modulation of Arabidopsis chromatin structure and function.	DEK domain-containing chromatin associated protein;(source:Araport11)
AT4G26640.1	protein_coding	WRKY family transcription factor family protein	member of WRKY Transcription Factor; Group I	WRKY family transcription factor family protein;(source:Araport11)
AT4G26650.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G26570.1	protein_coding	calcineurin B-like 3	member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins)	calcineurin B-like 3;(source:Araport11)
AT4G26660.1	protein_coding			kinesin-like protein;(source:Araport11)
AT4G26580.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G26590.1	protein_coding	oligopeptide transporter 5	oligopeptide transporter	oligopeptide transporter 5;(source:Araport11)
AT4G19650.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT4G19660.1	protein_coding	NPR1-like protein 4	Encodes NPR4, a ankyrin repeat BTB/POZ domain-containing  protein with 36% sequence identity with NPR1.  Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways. NPR3 and NPR4 are receptors for the immune signal salicylic acid.	NPR1-like protein 4;(source:Araport11)
AT4G19740.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT4G19670.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G19750.1	protein_coding	Glycosyl hydrolase family protein with chitinase insertion domain		Glycosyl hydrolase family protein with chitinase insertion domain-containing protein;(source:Araport11)
AT4G19840.1	protein_coding	phloem protein 2-A1	encodes a phloem lectin, similar to phloem lectin in cucumber and celery. Gene is expressed in the phloem, predominantly in the companion cells. The mRNA is cell-to-cell mobile.	phloem protein 2-A1;(source:Araport11)
AT4G19680.1	protein_coding	iron regulated transporter 2	encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.	iron regulated transporter 2;(source:Araport11)
AT4G19760.1	protein_coding	Glycosyl hydrolase family protein with chitinase insertion domain		Glycosyl hydrolase family protein with chitinase insertion domain-containing protein;(source:Araport11)
AT4G19850.1	protein_coding	lectin-related	encodes a protein similar to phloem protein 2 in cucumber. a member of a large gene family.	lectin-like protein;(source:Araport11)
AT4G19690.1	protein_coding	iron-regulated transporter 1	The gene encodes Fe2+ transporter protein. It is a member of the Zrt/Irt-like protein (ZIP) family of transporters. AtIRT1 has broad specificity for divalent heavy metals, mediating the transport of zinc, manganese, cobalt and cadmium under Fe-deficient conditions. IRT1 is monoubiquitinated to promote endocytic trafficking. The mRNA is cell-to-cell mobile.	iron-regulated transporter 1;(source:Araport11)
AT4G19770.1	protein_coding	Glycosyl hydrolase family protein with chitinase insertion domain		Glycosyl hydrolase family protein with chitinase insertion domain-containing protein;(source:Araport11)
AT4G19860.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a cytosolic calcium-independent phospholipase A.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G19780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.0e-72 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G19870.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G19700.1	protein_coding	SBP (S-ribonuclease binding protein) family protein	Encodes BOI (Botrytis Susceptible 1 Interactor).  Has E3 ubiquitin ligase activity. Interacts with and ubiquitinates BOS1 (Botrytis Susceptible 1).  It prevents caspase activation and attenuates cell death.	SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT4G19710.1	protein_coding	aspartate kinase-homoserine dehydrogenase ii	Encodes a bifunctional aspartate kinase/homoserine dehydrogenase.  These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.	aspartate kinase-homoserine dehydrogenase ii;(source:Araport11)
AT4G19790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-45 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G19880.1	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT4G19720.1	protein_coding	Glycosyl hydrolase family protein with chitinase insertion domain		Glycosyl hydrolase family protein with chitinase insertion domain-containing protein;(source:Araport11)
AT4G19800.1	protein_coding	Glycosyl hydrolase family protein with chitinase insertion domain		Glycosyl hydrolase family protein with chitinase insertion domain-containing protein;(source:Araport11)
AT4G19730.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT4G19810.1	protein_coding	Glycosyl hydrolase family protein with chitinase insertion domain	ChiC encodes a Class V chitinase that is a part of glycoside hydrolase family 18 based on CAZy groupings. It appears to primarily act as an exochitinase in vitro where it predominantly cleaves a chitobiose (GlcNAc)2 residue from the non-reducing end of a chitin oligosaccharide. However, it shows some minor endochitinase activity in vitro, as well. A putative 24 amino-acid signal peptide may direct this protein to the secretory system and it has been detected in cell wall apoplastic fluid. RT-PCR experiments demonstrate that ChiC transcript levels are increased in response to abscisisc acid, jasmonic acid, and NaCl stress. Microarray results also suggest that transcript levels rise in response to osmotic stress, two fungal pathogens, a bacterial pathogen, and the elicitor flagellin. The mRNA is cell-to-cell mobile.	Glycosyl hydrolase family protein with chitinase insertion domain-containing protein;(source:Araport11)
AT4G19820.1	protein_coding	Glycosyl hydrolase family protein with chitinase insertion domain		Glycosyl hydrolase family protein with chitinase insertion domain-containing protein;(source:Araport11)
AT4G19830.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein		FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G32880.1	protein_coding	homeobox gene 8	member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems.	homeobox-leucine zipper protein ATHB-8;(source:Araport11)
AT4G32810.1	protein_coding	carotenoid cleavage dioxygenase 8	Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip.  Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching.	carotenoid cleavage dioxygenase 8;(source:Araport11)
AT4G32820.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G32830.1	protein_coding	ataurora1	Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division.  Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems.  In interphase cells, the protein is predominantly nuclear.  During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.	ataurora1;(source:Araport11)
AT4G32840.1	protein_coding	phosphofructokinase 6		phosphofructokinase 6;(source:Araport11)
AT4G32850.1	protein_coding	nuclear poly(a) polymerase	Encodes a nuclear poly(A) polymerase. Located in the nucleus. The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT4G32860.1	protein_coding			Avr9/Cf-9 rapidly elicited protein;(source:Araport11)
AT4G32870.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT4G32800.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G33620.1	protein_coding	Cysteine proteinases superfamily protein	Encodes a SUMO protease that, along with  ASP1,is required for fertility as asp1/spf2 double mutants have defects in gametogenesis and embroygenesis.	Cysteine proteinases superfamily protein;(source:Araport11)
AT4G33540.1	protein_coding	metallo-beta-lactamase family protein		metallo-beta-lactamase family protein;(source:Araport11)
AT4G33630.1	protein_coding	Protein of unknown function (DUF3506)	Encodes one of the two plastid proteins EXECUTER (EX1, AT4G33630) and EX2 (AT1G27510). Mediates singlet oxygen induced programmed cell death.	UvrB/UvrC domain protein (DUF3506);(source:Araport11)
AT4G33550.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G33720.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT4G33640.1	protein_coding			costars family protein;(source:Araport11)
AT4G33560.1	protein_coding	Wound-responsive family protein	Member of the wound-induced polypeptide (WIP) family.	Wound-responsive family protein;(source:Araport11)
AT4G33730.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein	Member of CAP protein superfamily. Encoding a small 11 AA peptide (PAGNYIGARPY) involved in negative regulation of salt tolerance.	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT4G33650.1	protein_coding	dynamin-related protein 3A	Encodes a protein with high sequence similarity to the dynamin superfamily.  Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.	dynamin-related protein 3A;(source:Araport11)
AT4G33740.1	protein_coding			myb-like protein X;(source:Araport11)
AT4G33660.1	protein_coding			cysteine-rich TM module stress tolerance protein;(source:Araport11)
AT4G33580.1	protein_coding	beta carbonic anhydrase 5		beta carbonic anhydrase 5;(source:Araport11)
AT4G33670.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein	Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis	NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT4G33590.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G33760.1	protein_coding	tRNA synthetase class II (D, K and N) family protein	Aminoacyl tRNA synthetase functions in SAM maintenance.	tRNA synthetase class II (D, K and N) family protein;(source:Araport11)
AT4G33680.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	Encodes an L,L-diaminopimelate aminotransferase. Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT4G33600.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G33770.1	protein_coding	Inositol 1,3,4-trisphosphate 5/6-kinase family protein	Inositol pyrophosphate kinase. Catalyzes the phosphorylation of phytic acid (InsP6) to the symmetric InsP7 isomer 5-InsP7.	Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11)
AT4G33610.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G33690.1	protein_coding			G patch domain protein;(source:Araport11)
AT4G33780.1	protein_coding			ATP phosphoribosyltransferase regulatory subunit;(source:Araport11)
AT4G33700.1	protein_coding	CBS domain-containing protein with a domain of unknown function (DUF21)		CBS domain protein (DUF21);(source:Araport11)
AT4G33790.1	protein_coding	Jojoba acyl CoA reductase-related male sterility protein	Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.	Jojoba acyl CoA reductase-related male sterility protein;(source:Araport11)
AT4G33710.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT4G33800.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G33810.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT4G29510.1	protein_coding	arginine methyltransferase 11	Has arginine N-methyltransferase activity. Modifies AtMBD7.	arginine methyltransferase 11;(source:Araport11)
AT4G29590.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G29600.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT4G29690.1	protein_coding	Alkaline-phosphatase-like family protein		Alkaline-phosphatase-like family protein;(source:Araport11)
AT4G29520.1	protein_coding		SES1 is an ER localized chaperone involved in salt and heat stress response.	nucleophosmin;(source:Araport11)
AT4G29530.1	protein_coding	Pyridoxal phosphate phosphatase-related protein	Encodes a thiamin monophosphate phosphatase. Knockouts show no visible defects either in morphology or thiamin, ThMP and ThDP levels suggesting that Arabidopsis at least one other source of ThMPase activity.	Pyridoxal phosphate phosphatase-related protein;(source:Araport11)
AT4G29610.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT4G29700.1	protein_coding	Alkaline-phosphatase-like family protein		Alkaline-phosphatase-like family protein;(source:Araport11)
AT4G29540.1	protein_coding	bacterial transferase hexapeptide repeat-containing protein	Encodes a UDP-N-acetylglucosamine acyltransferase.	bacterial transferase hexapeptide repeat-containing protein;(source:Araport11)
AT4G29620.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT4G29710.1	protein_coding	Alkaline-phosphatase-like family protein		Alkaline-phosphatase-like family protein;(source:Araport11)
AT4G29550.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT4G29630.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT4G29720.1	protein_coding	polyamine oxidase 5		polyamine oxidase 5;(source:Araport11)
AT4G29560.1	protein_coding			fanconi anemia group E protein FANCE protein;(source:Araport11)
AT4G29640.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT4G29730.1	protein_coding	nucleosome/chromatin assembly factor group C5	cell cycle-related repressor genes encoding WD-repeat proteins.	nucleosome/chromatin assembly factor group C5;(source:Araport11)
AT4G29570.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT4G29650.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT4G29740.1	protein_coding	cytokinin oxidase 4	It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase 4;(source:Araport11)
AT4G29580.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT4G29660.1	protein_coding	embryo defective 2752		embryo defective 2752;(source:Araport11)
AT4G29750.1	protein_coding	CRS1 / YhbY (CRM) domain-containing protein		CRS1 / YhbY (CRM) domain-containing protein;(source:Araport11)
AT4G29670.1	protein_coding	atypical CYS  HIS rich thioredoxin 2	Encodes a member of the thioredoxin family protein.  Located in the chloroplast.  Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate   dehydrogenase.	atypical CYS HIS rich thioredoxin 2;(source:Araport11)
AT4G29760.1	protein_coding			target of trans acting-siR480/255 protein;(source:Araport11)
AT4G29680.1	protein_coding	Alkaline-phosphatase-like family protein		Alkaline-phosphatase-like family protein;(source:Araport11)
AT4G08040.1	protein_coding	1-aminocyclopropane-1-carboxylate synthase 11	encodes an aminotransferase that belongs to ACC synthase gene family structurally	1-aminocyclopropane-1-carboxylate synthase 11;(source:Araport11)
AT4G08050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 0. P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT4G08070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 4.8e-286 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G00760.1	protein_coding	pseudo-response regulator 8	Encodes a response-regulator like protein.	pseudo-response regulator 8;(source:Araport11)
AT4G00770.1	protein_coding			DUF4378 domain protein;(source:Araport11)
AT4G00850.1	protein_coding	GRF1-interacting factor 3	Arabidopsis thaliana GRF1-interacting factor 3 (GIF3) mRNA	GRF1-interacting factor 3;(source:Araport11)
AT4G00780.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT4G00860.1	protein_coding	Protein of unknown function (DUF1138)	putative pathogenesis-related protein whose transcript level is induced in response to ozone and pathogenic Pseudomonas strains.	monopolar spindle protein (DUF1138);(source:Araport11)
AT4G00950.1	protein_coding	Protein of unknown function (DUF688)		hypothetical protein (DUF688);(source:Araport11)
AT4G00870.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	bHLH14 interacts with JAZ proteins, and functions redundantly with bHLH3, bHLH13 and bHLH17 to negatively regulate jasmonate responses.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G00960.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G00800.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G00880.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G00970.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 41	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 41;(source:Araport11)
AT4G00810.1	protein_coding	60S acidic ribosomal protein family	Co-orthologous gene of large ribosomal subunit protein RPP1.	60S acidic ribosomal protein family;(source:Araport11)
AT4G00890.1	protein_coding	proline-rich family protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	proline-rich family protein;(source:Araport11)
AT4G00980.1	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT4G00900.1	protein_coding	ER-type Ca2+-ATPase 2	Type IIA (SERCA-type) Ca2+ ATPase, catalyzes the efflux of calcium from the cytoplasm.	ER-type Ca2+-ATPase 2;(source:Araport11)
AT4G00820.1	protein_coding	IQ-domain 17	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 17;(source:Araport11)
AT4G00910.1	protein_coding	Aluminium activated malate transporter family protein		aluminum activated malate transporter family protein;(source:Araport11)
AT4G00830.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a heterogeneous nuclear ribonucleoprotein (hnRNP-Q) that is involved in the plant innate immune response and may function as a suppressor of cell-autonomous immunity.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G00840.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT4G00920.1	protein_coding	COP1-interacting protein-related		COP1-interacting protein-like protein;(source:Araport11)
AT4G00930.1	protein_coding	COP1-interacting protein 4.1	Encodes COP1-interacting protein CIP4.1.	COP1-interacting protein 4.1;(source:Araport11)
AT4G00940.1	protein_coding	Dof-type zinc finger DNA-binding family protein		Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT4G19180.1	protein_coding	GDA1/CD39 nucleoside phosphatase family protein	Encodes a putative apyrase involved in pollen exine pattern formation and anther dehiscence.	GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11)
AT4G19190.1	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT4G19110.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G19200.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT4G19120.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G19210.1	protein_coding	RNAse l inhibitor protein 2	member of RLI subfamily The mRNA is cell-to-cell mobile.	RNAse l inhibitor protein 2;(source:Araport11)
AT4G19130.1	protein_coding	Replication factor-A protein 1-related		Replication factor-A protein 1-like protein;(source:Araport11)
AT4G19220.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G19140.1	protein_coding			exopolysaccharide production negative regulator;(source:Araport11)
AT4G19230.1	protein_coding	cytochrome P450, family 707, subfamily A, polypeptide 1	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy.	cytochrome P450, family 707, subfamily A, polypeptide 1;(source:Araport11)
AT4G19150.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G19160.1	protein_coding			transglutaminase family protein;(source:Araport11)
AT4G19170.1	protein_coding	nine-cis-epoxycarotenoid dioxygenase 4	chloroplast-targeted member of a family of  enzymes similar to nine-cis-epoxycarotenoid dioxygenase The mRNA is cell-to-cell mobile.	nine-cis-epoxycarotenoid dioxygenase 4;(source:Araport11)
AT4G04360.1	protein_coding	Protein of unknown function (DUF1068)		transmembrane protein, putative (DUF1068);(source:Araport11)
AT4G04370.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G04380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.5e-248 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G04300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase,  blastp match of 38%25 identity and 2.6e-40 P-value to GP|21104536|dbj|BAB93131.1||AP003196 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT4G04310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, zinc knuckle (CCHC type) protein family, contains Pfam domain PF00098: Zinc knuckle;(source:TAIR10)
AT4G04390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28250.1);(source:TAIR10)
AT4G04400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45380.1);(source:TAIR10)
AT4G04320.1	protein_coding	malonyl-CoA decarboxylase family protein		malonyl-CoA decarboxylase family protein;(source:Araport11)
AT4G04330.1	protein_coding	Chaperonin-like RbcX protein	Encodes a chloroplast thylakoid localized RbcX protein that acts as a chaperone in the folding of Rubisco.	Chaperonin-like RbcX protein;(source:Araport11)
AT4G04340.1	protein_coding	ERD (early-responsive to dehydration stress) family protein	Encodes a plasma membrane localized hyperosmolality gated calcium channel that is expressed in guard cells and roots.	ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G04350.1	protein_coding	tRNA synthetase class I (I, L, M and V) family protein		tRNA synthetase class I (I, L, M and V) family protein;(source:Araport11)
AT4G24020.1	protein_coding	NIN like protein 7	Encodes NIN Like Protein 7 (NLP7).  Modulates nitrate sensing and metabolism.  Mutants of NLP7 show features of nitrogen-starved plants and are tolerant to drought stress.  Localized in the nucleus and functions as a putative transcription factor. The mRNA is cell-to-cell mobile.	NIN like protein 7;(source:Araport11)
AT4G24110.1	protein_coding			NADP-specific glutamate dehydrogenase;(source:Araport11)
AT4G24030.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G24120.1	protein_coding	YELLOW STRIPE like 1	Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).	YELLOW STRIPE like 1;(source:Araport11)
AT4G24040.1	protein_coding	trehalase 1	Encodes a trehalase, member of Glycoside Hydrolase Family 37.	trehalase 1;(source:Araport11)
AT4G24130.1	protein_coding	Protein of unknown function, DUF538		DUF538 family protein (Protein of unknown function, DUF538);(source:Araport11)
AT4G24050.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G24140.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G24060.1	protein_coding	Dof-type zinc finger DNA-binding family protein		Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT4G24150.1	protein_coding	growth-regulating factor 8	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	growth-regulating factor 8;(source:Araport11)
AT4G24070.1	protein_coding	carbon-carbon lyases		carbon-carbon lyase;(source:Araport11)
AT4G24160.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a soluble lysophosphatidic acid acyltransferase with additional triacylglycerol lipase and phosphatidylcholine hydrolyzing enzymatic activities. Plays a pivotal role in maintaining the lipid homeostasis by regulating both phospholipid and neutral lipid levels.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G24080.1	protein_coding	aldolase like		aldolase like;(source:Araport11)
AT4G24170.1	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT4G24090.1	protein_coding			homer protein;(source:Araport11)
AT4G24100.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G04640.1	protein_coding	ATPase, F1 complex, gamma subunit protein	One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase.	ATPase, F1 complex, gamma subunit protein;(source:Araport11)
AT4G04650.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT4G04660.1	pseudogene			pseudogene of Ta11-like non-LTR retrotransposon;(source:Araport11)
AT4G04670.1	protein_coding	Met-10+ like family protein / kelch repeat-containing protein		Met-10+ like family protein / kelch repeat-containing protein;(source:Araport11)
AT4G04680.1	protein_coding			Rix1 complex component;(source:Araport11)
AT4G04690.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G36000.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT4G36090.1	protein_coding	oxidoreductase, 2OG-Fe(II) oxygenase family protein		oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT4G36010.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT4G36100.1	protein_coding	Sec1/munc18-like (SM) proteins superfamily		Sec1/munc18-like (SM) proteins superfamily;(source:Araport11)
AT4G36020.1	protein_coding	cold shock domain protein 1	Encodes a cold shock domain protein. Involved in cold acclimation by blocking the secondary structure of mRNA which in turn facilitates translation at cold temperature.	cold shock domain protein 1;(source:Araport11)
AT4G36110.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G36030.1	protein_coding	armadillo repeat only 3	Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules.	armadillo repeat only 3;(source:Araport11)
AT4G36120.1	protein_coding	Plant protein of unknown function (DUF869)		filament-like protein (DUF869);(source:Araport11)
AT4G36040.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G36050.1	protein_coding	endonuclease/exonuclease/phosphatase family protein	Encodes a base excision repair protein with 3'-phosphatase activity and strong 3'-5' exonuclease activity. Together with ZDP, it plays overlapping roles in the maintenance of epigenome and genome stability in plants.	endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT4G36060.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G36070.1	protein_coding	calcium-dependent protein kinase 18	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 18;(source:Araport11)
AT4G39630.1	protein_coding			translation initiation factor;(source:Araport11)
AT4G39740.1	protein_coding	Thioredoxin superfamily protein	Encodes HCC2, one of the two Arabidopsis genes (HCC1 and HCC2) resulting from a duplication with homology to the SCO proteins involved in copper insertion during cytochrome c oxidase (COX) assembly in other organisms. HCC2, which lacks the cysteines and histidine putatively involved in copper binding, functions in copper sensing and redox homeostasis.	Thioredoxin superfamily protein;(source:Araport11)
AT4G39750.1	protein_coding	F-box family protein-related		F-box family protein-like protein;(source:Araport11)
AT4G39760.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G39770.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT4G39780.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G39790.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		bZIP transcription factor, putative (DUF630 and DUF632);(source:Araport11)
AT4G04950.1	protein_coding	thioredoxin family protein	Encodes a monothiol glutaredoxin that is a critical component involved in ROS accumulation, auxin signaling, and temperature-dependent postembryonic growth in plants.  It has been shown to associate with the cytosolic Fe-S assembly (CIA) complex and contributes to, but is not essential for, the correct functioning of client Fe-S proteins in unchallenged conditions.	thioredoxin family protein;(source:Araport11)
AT4G04890.1	protein_coding	protodermal factor 2	Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression.	protodermal factor 2;(source:Araport11)
AT4G04900.1	protein_coding	ROP-interactive CRIB motif-containing protein 10	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings.	ROP-interactive CRIB motif-containing protein 10;(source:Araport11)
AT4G04910.1	protein_coding	AAA-type ATPase family protein	N-ethylmaleimide sensitive factor	AAA-type ATPase family protein;(source:Araport11)
AT4G04920.1	protein_coding	sensitive to freezing 6	Encodes a nuclear targeted protein that plays a role in the CBF pathway -downstream of CBF translation. Mutants have impaired cold responses, reduced levels of cold induced RNA transcripts, are sensitive to osmotic stress. Required for expression of CBF-controlled cold-upregulated genes and some, but not all, other cold up-regulated genes. Required for recruitment of the Mediator complex and RNA polymerase II to CBF-controlled cold-responsive genes. Required for expression of some dark-upregulated genes. SFR6 was isolated as a suppressor of cell wall defects in cob6 mutant background.	sensitive to freezing 6;(source:Araport11)
AT4G04930.1	protein_coding	fatty acid desaturase family protein	Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.	fatty acid desaturase family protein;(source:Araport11)
AT4G04940.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G05550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.9e-80 P-value blast match to Q9S9W4 /247-408 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G05560.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42254.1);(source:TAIR10)
AT4G05570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42460.1);(source:TAIR10)
AT4G05500.1	pseudogene			pseudogene of RNI-like superfamily protein;(source:Araport11)
AT4G05580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT1G42630.1);(source:TAIR10)
AT4G05510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 4.0e-144 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G05520.1	protein_coding	EPS15 homology domain 2	Encodes AtEHD2, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD1, At3g20290).	EPS15 homology domain 2;(source:Araport11)
AT4G05530.1	protein_coding	indole-3-butyric acid response 1	Encodes a peroxisomal member of the short-chain dehydrogenase/reductase (SDR) family of enzymes. Loss of IBR1 function causes increased resistance to indole-3-butyric acid without affecting plant responses to IAA, NAA, and 2,4-D. This enzyme may be responsible for catalyzing a dehydrogenation step in the beta-oxidation-like conversion of IBA to IAA. The mRNA is cell-to-cell mobile.	indole-3-butyric acid response 1;(source:Araport11)
AT4G05540.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G12420.1	protein_coding	Cupredoxin superfamily protein	Encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues.	Cupredoxin superfamily protein;(source:Araport11)
AT4G12430.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT4G12510.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a member of the AZI family of lipid transfer proteins.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G12440.1	protein_coding	adenine phosphoribosyl transferase 4		adenine phosphoribosyl transferase 4;(source:Araport11)
AT4G12520.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G12610.1	protein_coding	transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors		transcription initiation factor IIF subunit alpha RAP74;(source:Araport11)
AT4G12450.1	protein_coding			zinc finger (C2H2 type) family protein;(source:Araport11)
AT4G12530.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a member of the AZI family of lipid transfer proteins.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G12620.1	protein_coding	origin of replication complex 1B	Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.	origin of replication complex 1B;(source:Araport11)
AT4G12460.1	protein_coding	OSBP(oxysterol binding protein)-related protein 2B		OSBP(oxysterol binding protein)-related protein 2B;(source:Araport11)
AT4G12540.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G12470.1	protein_coding	azelaic acid induced 1	Encodes AZI1 (AZELAIC ACID INDUCED 1).  Involved in the priming of salicylic acid induction and systemic immunity triggered by pathogen or azelaic acid. Targeting if AZI1 to chloroplasts is increased during SAR induction and that localization requires the PRR domain.It is involved in the uptake and movement of the azelaic acid signal.	azelaic acid induced 1;(source:Araport11)
AT4G12550.1	protein_coding	Auxin-Induced in Root cultures 1	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.	Auxin-Induced in Root cultures 1;(source:Araport11)
AT4G12640.1	protein_coding	RNA recognition motif (RRM)-containing protein	Encodes a member of the Split ends (Spen) protein family that is characterized by an N-terminal domain, with one or more RNA recognition motifs and a SPOC domain. Knockout and overexpression mutants show no apparent changes in growth, development and flowering time under standard growth conditions.	RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT4G12480.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a putative lipid transfer protein, vernalization-responsive and cold-induced. It is involved in priming the SAR and ISR responses, specifically in propagating the cell-to-cell mobile signal.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G12560.1	protein_coding	F-box and associated interaction domains-containing protein	Encodes CPR1 (Constitutive Expresser of PR Genes 1, also known as CPR30), a F-Box protein that functions as a negative regulator of defense response and targets resistance proteins.	F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G12650.1	protein_coding	Endomembrane protein 70 protein family		Endomembrane protein 70 protein family;(source:Araport11)
AT4G12490.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a member of the AZI family of lipid transfer proteins. Contains a PRR domain that appears to be required for localization to the chloroplast.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G12570.1	protein_coding	ubiquitin protein ligase 5	Knock-out mutants showed accelerated senescence of leaves. The mRNA is cell-to-cell mobile.	ubiquitin protein ligase 5;(source:Araport11)
AT4G12500.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G12580.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G12590.1	protein_coding	Protein of unknown function DUF106, transmembrane		ER membrane protein complex subunit-like protein (Protein of unknown function DUF106, transmembrane);(source:Araport11)
AT4G12600.1	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT4G12840.1	protein_coding	Protein of unknown function (DUF707)		GTPase Der (DUF707);(source:Araport11)
AT4G12850.1	protein_coding	Far-red impaired responsive (FAR1) family protein	Encodes one of four FRS (FAR1-RELATED SEQUENCE) factor-like genes in Arabidopsis.  FRS factors are characterized by having an N-terminal C2H2-type chelating motif of the WRKY- Glial Cell Missing1 family, a central core transposase domain of Mutator-like element transposases, and a C-terminal SWIM domain. The four FRF-like genes in  Arabidopsis share only the N-terminal motif with FRS proteins.	Far-red impaired responsive (FAR1) family protein;(source:Araport11)
AT4G12670.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT4G12680.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G12760.1	protein_coding			RPA-interacting protein A;(source:Araport11)
AT4G12690.1	protein_coding	Plant protein of unknown function (DUF868)		DUF868 family protein (DUF868);(source:Araport11)
AT4G12770.1	protein_coding	Chaperone DnaJ-domain superfamily protein	Negative regulation of growth and endocytosis, most likely as a result of inhibition of the recruitment of clathrin to endocytic pits.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G12860.1	protein_coding	EF hand calcium-binding protein family		EF hand calcium-binding protein family;(source:Araport11)
AT4G12700.1	protein_coding			calcium ion-binding protein;(source:Araport11)
AT4G12780.1	protein_coding	Chaperone DnaJ-domain superfamily protein	Negative regulation of growth and endocytosis, most likely as a result of inhibition of the recruitment of clathrin to endocytic pits. Overexpression inhbits recruitment of clathrin resulting in negative regulation of endocytosis and developmental arrest.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G12870.1	protein_coding	Gamma interferon responsive lysosomal thiol (GILT) reductase family protein		Gamma interferon responsive lysosomal thiol (GILT) reductase family protein;(source:Araport11)
AT4G12710.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G12790.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G12880.1	protein_coding	early nodulin-like protein 19		early nodulin-like protein 19;(source:Araport11)
AT4G12720.1	protein_coding	MutT/nudix family protein	Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.	MutT/nudix family protein;(source:Araport11)
AT4G12800.1	protein_coding	photosystem I subunit l	Encodes subunit L of photosystem I reaction center.	photosystem I subunit l;(source:Araport11)
AT4G12890.1	protein_coding	Gamma interferon responsive lysosomal thiol (GILT) reductase family protein		Gamma interferon responsive lysosomal thiol (GILT) reductase family protein;(source:Araport11)
AT4G12730.1	protein_coding	FASCICLIN-like arabinogalactan 2	AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds. Fasciclin-like arabinogalactan protein. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan 2;(source:Araport11)
AT4G12810.1	protein_coding	F-box family protein	KIB1 contains an F-box domain at the N-terminal region and three kelch repeats at the C-terminal region. It is expressed ubiquitously and accumulates in the nucleolus and to a lesser extent in the cytoplasm.	F-box family protein;(source:Araport11)
AT4G12740.1	protein_coding	HhH-GPD base excision DNA repair family protein		HhH-GPD base excision DNA repair family protein;(source:Araport11)
AT4G12820.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)	Member of a family of proteins containing an F-box domain at the N-terminal region and three kelch repeats at the C-terminal region. Involved in BR signaling. Co-suppressed KIB1,2,3,4 lines have a dwarf phenotype and resemble BR receptor mutants.	F-box/kelch-repeat protein, putative (DUF295);(source:Araport11)
AT4G12750.1	protein_coding	Homeodomain-like transcriptional regulator		Homeodomain-like transcriptional regulator;(source:Araport11)
AT4G12830.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G24190.1	protein_coding	Chaperone protein htpG family protein	encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat.  Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues.	Chaperone protein htpG family protein;(source:Araport11)
AT4G24270.1	protein_coding	EMBRYO DEFECTIVE 140	A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	EMBRYO DEFECTIVE 140;(source:Araport11)
AT4G24280.1	protein_coding	chloroplast heat shock protein 70-1	Involved in protein import into  chloroplasts during early developmental stages. The mRNA is cell-to-cell mobile.	chloroplast heat shock protein 70-1;(source:Araport11)
AT4G24370.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G24200.1	protein_coding	Transcription elongation factor (TFIIS) family protein		Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT4G24290.1	protein_coding	MAC/Perforin domain-containing protein		MAC/Perforin domain-containing protein;(source:Araport11)
AT4G24210.1	protein_coding	F-box family protein	F-box protein that is involved in GA signaling.  Regulates seed germination. Component of E3 ubiquitin complex. Interacts with DELLA proteins.	F-box family protein;(source:Araport11)
AT4G24380.1	protein_coding			dihydrofolate reductase;(source:Araport11)
AT4G24300.1	protein_coding	Peptidase C50, separase		Peptidase C50, separase;(source:Araport11)
AT4G24220.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	encodes a progesterone-5beta-reductase-like  protein. It has enone reductase activity against a wide range of substrates, including 3-oxo-&#916;-4,5-steroids in vitro. The in vivo substrates and product of this enzyme have not yet been elucidated but it is likely to participate in steroid metabolism. The protein contains a mammalian death domain involved in programmed cell death. The gene is expressed in the vascular system and mutants carrying a dominant mutation in the gene have defective vascular patterning. VEP1 gene expression is induced specifically by wounding.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G24470.1	protein_coding	GATA-type zinc finger protein with TIFY domain	ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif.	GATA-type zinc finger protein with TIFY domain-containing protein;(source:Araport11)
AT4G24390.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G24230.1	protein_coding	acyl-CoA-binding domain 3	acyl-CoA-binding protein ACBP3. Localized  extracellularly in transiently expressed tobacco BY-2  cells and onion epidermal cells. Binds arachidonyl-CoA with high  affinity. Microarray data shows up-regulation of many biotic- and abiotic-stress-related genes in an ACBP3 OE-1 in comparison to wild type.	acyl-CoA-binding domain 3;(source:Araport11)
AT4G24310.1	protein_coding	Protein of unknown function (DUF679)		transmembrane protein, putative (DUF679);(source:Araport11)
AT4G24480.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G24400.1	protein_coding	CBL-interacting protein kinase 8	Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. Regulates the low-affinity phase of the primary nitrate response. The mRNA is cell-to-cell mobile.	CBL-interacting protein kinase 8;(source:Araport11)
AT4G24240.1	protein_coding	WRKY DNA-binding protein 7	Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.	WRKY DNA-binding protein 7;(source:Araport11)
AT4G24320.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT4G24410.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G24250.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT4G24330.1	protein_coding	Protein of unknown function (DUF1682)		hypothetical protein (DUF1682);(source:Araport11)
AT4G24420.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G24260.1	protein_coding	glycosyl hydrolase 9A3	Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by  Heterodera schachtii.May be involved in the development and function of syncitia.	glycosyl hydrolase 9A3;(source:Araport11)
AT4G24340.1	protein_coding	Phosphorylase superfamily protein		Phosphorylase superfamily protein;(source:Araport11)
AT4G24430.1	protein_coding	Rhamnogalacturonate lyase family protein		Rhamnogalacturonate lyase family protein;(source:Araport11)
AT4G24350.1	protein_coding	Phosphorylase superfamily protein		Phosphorylase superfamily protein;(source:Araport11)
AT4G24440.1	protein_coding	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)		transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S);(source:Araport11)
AT4G24450.1	protein_coding	phosphoglucan, water dikinase		phosphoglucan, water dikinase;(source:Araport11)
AT4G24460.1	protein_coding	CRT (chloroquine-resistance transporter)-like transporter 2	Encodes one of the CRT-Like transporters (CLT1/AT5G19380, CLT2/AT4G24460, CLT3/AT5G12170). Required for glutathione homeostasis and stress responses.  Mutants lacking these transporters are heavy metal-sensitive, glutathione(GSH)-deficient, and hypersensitive to Phytophthora infection.	CRT (chloroquine-resistance transporter)-like transporter 2;(source:Araport11)
AT4G11130.1	protein_coding	RNA-dependent RNA polymerase 2	Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004).	RNA-dependent RNA polymerase 2;(source:Araport11)
AT4G11050.1	protein_coding	glycosyl hydrolase 9C3		glycosyl hydrolase 9C3;(source:Araport11)
AT4G11140.1	protein_coding	cytokinin response factor 1	Encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. CRF proteins relocalize to the nucleus in response to cytokinin.	cytokinin response factor 1;(source:Araport11)
AT4G11060.1	protein_coding	mitochondrially targeted single-stranded DNA binding protein	Participates in a minimal functioning DNA replisome in plant chloroplasts and mitochondria which consists of the DNA primase-helicase protein Twinkle along with DNA polymerase 1A or 1B.	mitochondrially targeted single-stranded DNA binding protein;(source:Araport11)
AT4G11150.1	protein_coding	vacuolar ATP synthase subunit E1	Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis. The mRNA is cell-to-cell mobile.	vacuolar ATP synthase subunit E1;(source:Araport11)
AT4G11070.1	protein_coding	WRKY family transcription factor	member of WRKY Transcription Factor; Group III	WRKY family transcription factor;(source:Araport11)
AT4G11160.1	protein_coding	Translation initiation factor 2, small GTP-binding protein		Translation initiation factor 2, small GTP-binding protein;(source:Araport11)
AT4G11080.1	protein_coding	HMG (high mobility group) box protein	Encodes a protein containing three copies of the HMG (high mobility group)-box domain.  The two Arabidopsis 3xHMG-box proteins are: AT4G11080 (3xHMG-box1) and AT4G23800 (3xHMG-box2).  Interacts with mitotic and meiotic chromosomes.	HMG (high mobility group) box protein;(source:Araport11)
AT4G11170.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	Encodes RMG1 (Resistance Methylated Gene 1), a NB-LRR disease resistance protein with a Toll/interleukin-1 receptor (TIR) domain at its N terminus. RMG1 is expressed at high levels in response to flg22 and in naive met1/nrpd2 relative to wild-type plants. Expression of this gene is controlled by DNA methylation in its promoter region. The RMG1 promoter region is constitutively demethylated by active DNA demethylation mediated by the DNA glycosylase ROS1.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G11090.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 23	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. Functions as a mannan O-acetyltransferase, catalyzing the 2-O and 3-O-monoacetylation of mannosyl residues.A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 23;(source:Araport11)
AT4G11180.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein	Seed coat specific expressed protein.	Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT4G11100.1	protein_coding			gelsolin protein;(source:Araport11)
AT4G11190.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT4G11110.1	protein_coding	SPA1-related 2	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain.  SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings.  SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants.	SPA1-related 2;(source:Araport11)
AT4G11200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30370.1);(source:TAIR10)
AT4G11030.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT4G11040.1	protein_coding	Protein phosphatase 2C family protein	Encodes a nuclear localized protein with sequence similarity to PP2C phosphatases that is involved in seed dormancy. Loss of function mutations have reduced seed dormancy but does not act through ABA or DOG1 pathways. Lacks several conserved key residues and does not possess any appreciable phosphatase activity in in vitro assays. QTL allele with a nonsynonymous amino acid change confers seed dormancy phenotype.	Protein phosphatase 2C family protein;(source:Araport11)
AT4G11120.1	protein_coding	translation elongation factor Ts (EF-Ts), putative		translation elongation factor Ts (EF-Ts);(source:Araport11)
AT4G39330.1	protein_coding	cinnamyl alcohol dehydrogenase 9		cinnamyl alcohol dehydrogenase 9;(source:Araport11)
AT4G39250.1	protein_coding	RAD-like 1		RAD-like 1;(source:Araport11)
AT4G39170.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT4G39340.1	protein_coding	Protein of unknown function (DUF1278)	Encodes a small cysteine-rich protein that is secreted by the egg cell during gamete interactions. The regulated secretion of EC1 by the egg cell upon sperm-egg interaction is proposed to ensure the appropriate localization of the cell-fusion machinery in distinct sperm membrane domains to accomplish gamete fusion.	Egg cell-secreted-like protein (DUF1278);(source:Araport11)
AT4G39260.1	protein_coding	cold, circadian rhythm, and RNA binding 1	Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7.  A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	cold, circadian rhythm, and RNA binding 1;(source:Araport11)
AT4G39180.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein	encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae	Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT4G39350.1	protein_coding	cellulose synthase A2	Encodes a cellulose synthase isomer, related to CESA6.  As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening. The mRNA is cell-to-cell mobile.	cellulose synthase A2;(source:Araport11)
AT4G39270.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G39190.1	protein_coding			nucleolar-like protein;(source:Araport11)
AT4G39360.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G39280.1	protein_coding	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative		phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase;(source:Araport11)
AT4G39290.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G39110.1	protein_coding	Malectin/receptor-like protein kinase family protein	bups1 and bups1/2 double mutants have reduced feritlity due to premature rupture of pollen tubes before they reach the ovule. BUSP1 interacts with RALF4/19 peptide ligands and  ANX1/2 receptors. BUPS/ANX signaling may regulate and promote pollen tube growth.	Malectin/receptor-like protein kinase family protein;(source:Araport11)
AT4G39120.1	protein_coding	myo-inositol monophosphatase like 2	Encodes a chloroplast-localized member of the myo-inositol monophosphatase family, IMPL2 (myo-Inositol monophosphatase like 2) that seems to have multiple enzymatic activities. It contributes to histidine biosynthesis based on it histidinol-phosphate phosphatase activity. In addition, the protein can act as an inositol monophosphatase and an L-galactose-1-phosphate phosphatase in vitro.	inositol monophosphatase family protein;(source:Araport11)
AT4G39200.1	protein_coding	Ribosomal protein S25 family protein		Ribosomal protein S25 family protein;(source:Araport11)
AT4G39130.1	protein_coding	Dehydrin family protein		Dehydrin family protein;(source:Araport11)
AT4G39210.1	protein_coding	Glucose-1-phosphate adenylyltransferase family protein	Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots.	Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT4G39300.1	protein_coding			envelope glycoprotein;(source:Araport11)
AT4G39140.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G39220.1	protein_coding	Rer1 family protein	Key player of retrieval of ER membrane proteins	Rer1 family protein;(source:Araport11)
AT4G39150.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT4G39230.1	protein_coding	NmrA-like negative transcriptional regulator family protein	encodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol.	NmrA-like negative transcriptional regulator family protein;(source:Araport11)
AT4G39320.1	protein_coding	microtubule-associated protein-related		microtubule-associated protein-like protein;(source:Araport11)
AT4G39160.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT4G39240.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G27180.1	protein_coding	kinesin 2	kinesin heavy chain subunit	kinesin 2;(source:Araport11)
AT4G27100.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT4G27190.1	protein_coding	NB-ARC domain-containing disease resistance protein		NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT4G27110.1	protein_coding	COBRA-like protein 11 precursor		COBRA-like protein 11 precursor;(source:Araport11)
AT4G27120.1	protein_coding			DDRGK domain protein;(source:Araport11)
AT4G27130.1	protein_coding	Translation initiation factor SUI1 family protein		Translation initiation factor SUI1 family protein;(source:Araport11)
AT4G27060.1	protein_coding	ARM repeat superfamily protein	Encodes a novel, plant-specific microtubule-associated protein that regulates the orientation of cortical microtubules and the direction of organ growth.  The protein plays a role in control of microtubule dependent anisotropic cell elongation. spr2 mutant rosette leaves, cauline leaves, roots, petioles and petals curl in an anticlockwise direction.	ARM repeat superfamily protein;(source:Araport11)
AT4G27150.1	protein_coding	seed storage albumin 2		seed storage albumin 2;(source:Araport11)
AT4G27140.1	protein_coding	seed storage albumin 1		seed storage albumin 1;(source:Araport11)
AT4G27070.1	protein_coding	tryptophan synthase beta-subunit 2	Tryptophan synthase beta. Expressed at low levels in all tissues. The mRNA is cell-to-cell mobile.	tryptophan synthase beta-subunit 2;(source:Araport11)
AT4G27160.1	protein_coding	seed storage albumin 3		seed storage albumin 3;(source:Araport11)
AT4G27080.1	protein_coding	PDI-like 5-4	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).	PDI-like 5-4;(source:Araport11)
AT4G27170.1	protein_coding	seed storage albumin 4		seed storage albumin 4;(source:Araport11)
AT4G27090.1	protein_coding	Ribosomal protein L14		Ribosomal protein L14;(source:Araport11)
AT4G07920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G07890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-14 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G04130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42690.1);(source:TAIR10)
AT4G04050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.2e-207 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT4G04140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.3e-78 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G04150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G04070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30810.1);(source:TAIR10)
AT4G03990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1);(source:TAIR10)
AT4G04000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.6e-39 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT4G04080.1	protein_coding	ISCU-like 3	Encodes a mitochondrial protein similar to E.coli IscU.  In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.	ISCU-like 3;(source:Araport11)
AT4G04010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1);(source:TAIR10)
AT4G04090.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT4G04020.1	protein_coding	fibrillin	Fibrillin precursor protein. The fibrillin preprotein, but not the mature protein interacts with ABI2. Regulated by abscisic acid response regulators. Involved in abscisic acid-mediated photoprotection. The mRNA is cell-to-cell mobile.	fibrillin;(source:Araport11)
AT4G04100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.6e-16 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G04110.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT4G04030.1	protein_coding	ovate family protein 9		transcription repressor;(source:Araport11)
AT4G04120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT4G04040.1	protein_coding	Phosphofructokinase family protein		Phosphofructokinase family protein;(source:Araport11)
AT4G03980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.0e-80 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G03920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.1e-40 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G03930.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT4G03940.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G03950.1	protein_coding	Nucleotide/sugar transporter family protein		Nucleotide/sugar transporter family protein;(source:Araport11)
AT4G03960.1	protein_coding	Phosphotyrosine protein phosphatases superfamily protein	Encodes an atypical dual-speci&#64257;city phosphatase involved in the negative regulation of defense response to a bacterial pathogen, P. syringae pv. tomato.	Phosphotyrosine protein phosphatases superfamily protein;(source:Araport11)
AT4G03970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G10350.1);(source:TAIR10)
AT4G03880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G03890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1);(source:TAIR10)
AT4G03900.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 3.9e-150 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT4G03910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.9e-39 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G26200.1	protein_coding	1-amino-cyclopropane-1-carboxylate synthase 7	Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA.	1-amino-cyclopropane-1-carboxylate synthase 7;(source:Araport11)
AT4G26290.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G26210.1	protein_coding	Mitochondrial ATP synthase subunit G protein		Mitochondrial ATP synthase subunit G protein;(source:Araport11)
AT4G26300.1	protein_coding	Arginyl-tRNA synthetase, class Ic		Arginyl-tRNA synthetase, class Ic;(source:Araport11)
AT4G26220.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a caffeoyl-coenzyme A O-methyltransferase (CCoAOMT)-like protein with a strong preference for methylating the para position of flavanones and dihydroflavonols, whereas flavones and flavonols are methylated in the meta-position.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G26310.1	protein_coding	elongation factor P (EF-P) family protein		elongation factor P (EF-P) family protein;(source:Araport11)
AT4G26230.1	protein_coding	Ribosomal protein L31e family protein		Ribosomal protein L31e family protein;(source:Araport11)
AT4G26320.1	protein_coding	arabinogalactan protein 13		arabinogalactan protein 13;(source:Araport11)
AT4G26240.1	protein_coding			histone-lysine N-methyltransferase;(source:Araport11)
AT4G26330.1	protein_coding	Subtilisin-like serine endopeptidase family protein		Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT4G26250.1	protein_coding	galactinol synthase 6	Predicted to encode a galactinol synthase.	galactinol synthase 6;(source:Araport11)
AT4G26340.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT4G26260.1	protein_coding	myo-inositol oxygenase 4	Encodes a myo-inositol oxygenase, which is the first enzyme in the inositol route to ascorbate (L&#8208;ascorbic acid, AsA, vitamin C). Overexpression results in enhanced biomass and abiotic stress tolerance.	myo-inositol oxygenase 4;(source:Araport11)
AT4G26350.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT4G26270.1	protein_coding	phosphofructokinase 3		phosphofructokinase 3;(source:Araport11)
AT4G26280.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G09590.1	protein_coding	NDR1/HIN1-like 22	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine.	NDR1/HIN1-like 22;(source:Araport11)
AT4G09600.1	protein_coding	GAST1 protein homolog 3	One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.	GAST1 protein homolog 3;(source:Araport11)
AT4G09610.1	protein_coding	GAST1 protein homolog 2		GAST1 protein homolog 2;(source:Araport11)
AT4G09620.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT4G09630.1	protein_coding	Protein of unknown function (DUF616)		transmembrane protein (DUF616);(source:Araport11)
AT4G09640.1	protein_coding	Protein of unknown function (DUF803)		magnesium transporter, putative (DUF803);(source:Araport11)
AT4G09570.1	protein_coding	calcium-dependent protein kinase 4	Encodes a member of Calcium Dependent Protein Kinase (CDPK) gene family.Positive regulator of ABA signaling. Phosphorylates ABA responsive transcription factors ABF1 and ABF4.	calcium-dependent protein kinase 4;(source:Araport11)
AT4G09650.1	protein_coding	ATP synthase delta-subunit gene	Encodes the chloroplast ATPase delta-subunit. The mRNA is cell-to-cell mobile.	F-type H+-transporting ATPase subunit delta;(source:Araport11)
AT4G09580.1	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT4G11900.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT4G11820.1	protein_coding	hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase	Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant.	hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase;(source:Araport11)
AT4G11910.1	protein_coding		Acts antagonistically with SGR1 to balance chlorophyll catabolism in chloroplasts with  the dismantling and remobilizing of other cellular components in senescing leaf cells.	STAY-GREEN-like protein;(source:Araport11)
AT4G11830.1	protein_coding	phospholipase D gamma 2	Encodes one of three phospholipase D enzymes of the gamma class.	phospholipase D gamma 2;(source:Araport11)
AT4G11920.1	protein_coding	cell cycle switch protein 52  A2	Encodes a putative activator of the anaphase-promoting complex/cyclosome. Promotes exit from the cell cycle and entry into the endocycle leading to endoreduplication. Mutation of this gene results in abnormal shoot apical meristem development.  It likely regulates the development of meristems by indirectly interacting with WUS and CLV3.	cell cycle switch protein 52 A2;(source:Araport11)
AT4G11840.1	protein_coding	phospholipase D gamma 3	member of C2-PLD subfamily	phospholipase D gamma 3;(source:Araport11)
AT4G11930.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G11850.1	protein_coding	phospholipase D gamma 1	Encodes a phospholipase D (gamma) that is involved in aluminum tolerance and plays a role in membrane lipid modulation under Al stress.	phospholipase D gamma 1;(source:Araport11)
AT4G11860.1	protein_coding	Protein of unknown function (DUF544)     		FAM63A-like protein (DUF544);(source:Araport11)
AT4G11870.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G11800.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT4G11890.1	protein_coding	Protein kinase superfamily protein	Encodes a receptor-like cytosolic kinase ARCK1. Negatively controls abscisic acid and osmotic stress signal transduction.	Protein kinase superfamily protein;(source:Araport11)
AT4G11880.1	protein_coding	AGAMOUS-like 14	AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. The mRNA is cell-to-cell mobile.	AGAMOUS-like 14;(source:Araport11)
AT4G11810.1	protein_coding	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein	Encodes an SPX domain protein that transports Pi into the vacuole. Overexpression of PHT5:2 leads to massive Pi sequestration into vacuoles and altered regulation of Pi starvation-responsive genes.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT4G04470.1	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	22-kD peroxisomal membrane protein, an integral membrane protein embedded in the lipid bilayer.	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT4G04480.1	protein_coding			F-box protein with a domain protein;(source:Araport11)
AT4G04490.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 36	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 36;(source:Araport11)
AT4G04410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.7e-176 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT4G04500.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 37	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 37;(source:Araport11)
AT4G04420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT4G04430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 8.6e-122 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G04440.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-215 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G04450.1	protein_coding	WRKY family transcription factor	member of WRKY Transcription Factor; Group II-b	WRKY family transcription factor;(source:Araport11)
AT4G04460.1	protein_coding	Saposin-like aspartyl protease family protein		Saposin-like aspartyl protease family protein;(source:Araport11)
AT4G04250.1	pseudogene			pseudogene of hypothetical protein (Protein of unknown function;(source:Araport11)
AT4G04170.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.3e-87 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G04260.1	protein_coding	Bromo-adjacent homology (BAH) domain-containing protein		Bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT4G04180.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G04270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 9.7e-78 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G04190.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G04280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G04200.1	protein_coding	Microsomal signal peptidase 25 kDa subunit (SPC25)		Microsomal signal peptidase 25 kDa subunit (SPC25);(source:Araport11)
AT4G04290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.8e-94 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata);(source:TAIR10)
AT4G04210.1	protein_coding	plant UBX domain containing protein 4	Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4)	plant UBX domain containing protein 4;(source:Araport11)
AT4G04220.1	protein_coding	receptor like protein 46		receptor like protein 46;(source:Araport11)
AT4G04230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.3e-95 P-value blast match to T27D20 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT4G27890.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT4G27810.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G27820.1	protein_coding	beta glucosidase 9		beta glucosidase 9;(source:Araport11)
AT4G27830.1	protein_coding	beta glucosidase 10	Encodes a beta-glucosidase that may be responsible for acyl-glucose-dependent anthocyanin glucosyltransferase activity in Arabidopsis.  In vitro efforts to demonstrate AAGT activity for BGLU10 have been unsuccessful but experiments with mutants in this gene suggest at least an indirect involvement in anthocyanin formation.	beta glucosidase 10;(source:Araport11)
AT4G27840.1	protein_coding	SNARE-like superfamily protein		SNARE-like superfamily protein;(source:Araport11)
AT4G27850.1	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT4G27860.1	protein_coding	vacuolar iron transporter (VIT) family protein		vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT4G27780.1	protein_coding	acyl-CoA binding protein 2	Encodes acyl-CoA-binding protein with ankyrin repeats The mRNA is cell-to-cell mobile.	acyl-CoA binding protein 2;(source:Araport11)
AT4G27790.1	protein_coding	Calcium-binding EF hand family protein		Calcium-binding EF hand family protein;(source:Araport11)
AT4G27870.1	protein_coding	Vacuolar iron transporter (VIT) family protein		Vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT4G27880.1	protein_coding	Protein with RING/U-box and TRAF-like domains		Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT4G27800.1	protein_coding	thylakoid-associated phosphatase 38	Choroplast protein phosphatase TAP38/PPH1 is  required for efficient dephosphorylation of the LHCII anthena and state transition from state 2 to state 1.	thylakoid-associated phosphatase 38;(source:Araport11)
AT4G08350.1	protein_coding	global transcription factor group A2		global transcription factor group A2;(source:Araport11)
AT4G08360.1	protein_coding	KOW domain-containing protein		KOW domain-containing protein;(source:Araport11)
AT4G08370.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT4G08380.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT4G08390.1	protein_coding	stromal ascorbate peroxidase	Encodes a chloroplastic stromal ascorbate peroxidase sAPX.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. The mRNA is cell-to-cell mobile.	stromal ascorbate peroxidase;(source:Araport11)
AT4G08320.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G08410.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT4G08400.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT4G08330.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G08420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.0e-59 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G08340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1);(source:TAIR10)
AT4G37730.1	protein_coding	basic leucine-zipper 7		basic leucine-zipper 7;(source:Araport11)
AT4G37820.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G37740.1	protein_coding	growth-regulating factor 2	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower	growth-regulating factor 2;(source:Araport11)
AT4G37830.1	protein_coding	cytochrome c oxidase-related		cytochrome c oxidase-like protein;(source:Araport11)
AT4G37750.1	protein_coding	Integrase-type DNA-binding superfamily protein	ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed in the chalaza, floral organ primordia, and lateral shoot organ primordia. Regulates growth and cell numbers during organogenesis.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G37840.1	protein_coding	hexokinase-like 3	Encodes a putative hexokinase.	hexokinase-like 3;(source:Araport11)
AT4G37760.1	protein_coding	squalene epoxidase 3		squalene epoxidase 3;(source:Araport11)
AT4G37850.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G37770.1	protein_coding	1-amino-cyclopropane-1-carboxylate synthase 8	Encodes an auxin inducible ACC synthase.	1-amino-cyclopropane-1-carboxylate synthase 8;(source:Araport11)
AT4G37860.1	protein_coding	SPT2 chromatin protein		SPT2 chromatin protein;(source:Araport11)
AT4G37780.1	protein_coding	myb domain protein 87	"encoded by the Myb-like transcription factor MYB87, regulates axillary meristem formation, expressed throughout the plant. Member of the R2R3 factor gene family."	myb domain protein 87;(source:Araport11)
AT4G37870.1	protein_coding	phosphoenolpyruvate carboxykinase 1	Encodes a phosphoenolpyruvate carboxykinase that localizes to the cytosol.	phosphoenolpyruvate carboxykinase 1;(source:Araport11)
AT4G37790.1	protein_coding	Homeobox-leucine zipper protein family	Encodes homeobox protein HAT22, member of the HD-Zip II family. The mRNA is cell-to-cell mobile.	Homeobox-leucine zipper protein family;(source:Araport11)
AT4G37880.1	protein_coding	LisH/CRA/RING-U-box domains-containing protein		LisH/CRA/RING-U-box domains-containing protein;(source:Araport11)
AT4G37800.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 7		xyloglucan endotransglucosylase/hydrolase 7;(source:Araport11)
AT4G37810.1	protein_coding			EPIDERMAL PATTERNING FACTOR-like protein;(source:Araport11)
AT4G27610.1	protein_coding			intracellular protein transporter;(source:Araport11)
AT4G27620.1	protein_coding			intracellular protein transporter;(source:Araport11)
AT4G27710.1	protein_coding	cytochrome P450, family 709, subfamily B, polypeptide 3	member of CYP709B The mRNA is cell-to-cell mobile.	cytochrome P450, family 709, subfamily B, polypeptide 3;(source:Araport11)
AT4G27630.1	protein_coding	GPCR-type G protein 2	Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG2 binds to GPA1, the alpha subunit of the heterotrimeric G protein.  GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG2 and may act to down-regulate GTG2 binding to ABA. GTG2 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG2 transcript levels do not appear to change in response to ABA or abiotic stresses.	GPCR-type G protein 2;(source:Araport11)
AT4G27720.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT4G27550.1	protein_coding	trehalose-6-phosphatase synthase S4	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.	trehalose-6-phosphatase synthase S4;(source:Araport11)
AT4G27640.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G27560.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G27730.1	protein_coding	oligopeptide transporter 1	oligopeptide transporter	oligopeptide transporter 1;(source:Araport11)
AT4G27650.1	protein_coding	Eukaryotic release factor 1 (eRF1) family protein	Encodes Arabidopsis homolog of Drosophila pelota protein. Functions in RNA the non-stop decay (NSD) and no-go decay (NGD) quality control systems that act during translation.	Eukaryotic release factor 1 (eRF1) family protein;(source:Araport11)
AT4G27570.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G27740.1	protein_coding	Yippee family putative zinc-binding protein		Yippee family putative zinc-binding protein;(source:Araport11)
AT4G27660.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G27580.1	protein_coding			phosphatidylinositol transfer SFH5-like protein;(source:Araport11)
AT4G27750.1	protein_coding	binding	A genetic locus involved in sugar sensing and coordinating carbohydrate synthesis and utilization by the whole plant. Lines carrying mutations in this gene shows restricted carbohydrate allocation to plant growth and seed set, elevated chlorophyll levels, and reduced sugar induction of starch biosynthesis.	binding protein;(source:Araport11)
AT4G27670.1	protein_coding	heat shock protein 21	Encodes Hsp21, a chloroplast located small heat shock protein. A structure model of Hsp21, obtained by homology modeling, single-particle electron microscopy, and lysine-specific chemical crosslinking, shows that the Hsp21 subunits are arranged in two hexameric discs, rotated by 25 degree in relation to each other.	heat shock protein 21;(source:Araport11)
AT4G27590.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G27680.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G27600.1	protein_coding	pfkB-like carbohydrate kinase family protein	Encodes a phosphofructokinase B-type carbohydrate kinase family protein, NARA5.  Regulates photosynthetic gene expression.	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT4G27690.1	protein_coding	vacuolar protein sorting 26B		vacuolar protein sorting 26B;(source:Araport11)
AT4G27700.1	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein		Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT4G02270.1	protein_coding	root hair specific 13		root hair specific 13;(source:Araport11)
AT4G02290.1	protein_coding	glycosyl hydrolase 9B13		glycosyl hydrolase 9B13;(source:Araport11)
AT4G02280.1	protein_coding	sucrose synthase 3	Encodes a protein with sucrose synthase activity (SUS3). It appears to be important for sucrose metabolism in developing seeds, especially during the late maturation phase, about 18 days after flowering.	sucrose synthase 3;(source:Araport11)
AT4G02300.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT4G02310.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G02230.1	protein_coding	Ribosomal protein L19e family protein		Ribosomal protein L19e family protein;(source:Araport11)
AT4G02250.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT4G02260.1	protein_coding	RELA/SPOT homolog 1	Displays guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity  but not  guanosine-3',5'-bis(diphosphate) 3'-diphosphate synthase activity.	RELA/SPOT homolog 1;(source:Araport11)
AT4G09280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G24930.1);(source:TAIR10)
AT4G09290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G30640.1);(source:TAIR10)
AT4G09300.1	protein_coding	LisH and RanBPM domains containing protein		LisH and RanBPM domains containing protein;(source:Araport11)
AT4G09320.1	protein_coding	Nucleoside diphosphate kinase family protein	nucleoside diphosphate kinase type 1 (NDPK1) gene, complete The mRNA is cell-to-cell mobile.	nucleoside diphosphate kinase;(source:Araport11)
AT4G09250.1	protein_coding	SPla/RYanodine receptor (SPRY) domain-containing protein		SPla/RYanodine receptor (SPRY) domain-containing protein;(source:Araport11)
AT4G09340.1	protein_coding	SPla/RYanodine receptor (SPRY) domain-containing protein		SPla/RYanodine receptor (SPRY) domain-containing protein;(source:Araport11)
AT4G09260.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G09350.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G25390.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G25400.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G25410.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G25340.1	protein_coding	FK506 BINDING PROTEIN 53	Encodes a member of the FKBP-type immunophilin family that functions as a histone chaparone. Binds to 18S rDNA and represses its expression.	FK506 BINDING PROTEIN 53;(source:Araport11)
AT4G25420.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G25350.1	protein_coding	EXS (ERD1/XPR1/SYG1) family protein	SHB1 encodes a nuclear and cytosolic protein that has motifs  homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING  FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation  phenotypes. Acts upstream of HFR1. Regulates seed development.	EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT4G25360.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 18	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 18;(source:Araport11)
AT4G25370.1	protein_coding	Double Clp-N motif protein		Double Clp-N motif protein;(source:Araport11)
AT4G25380.1	protein_coding	stress-associated protein 10		stress-associated protein 10;(source:Araport11)
AT4G23970.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G23890.1	protein_coding			NAD(P)H-quinone oxidoreductase subunit S;(source:Araport11)
AT4G23980.1	protein_coding	auxin response factor 9	Encodes auxin response factor 9 (ARF9). The mRNA is cell-to-cell mobile.	auxin response factor 9;(source:Araport11)
AT4G23900.1	protein_coding	Nucleoside diphosphate kinase family protein		Nucleoside diphosphate kinase family protein;(source:Araport11)
AT4G23990.1	protein_coding	cellulose synthase like G3	encodes a protein similar to cellulose synthase	cellulose synthase like G3;(source:Araport11)
AT4G23910.1	protein_coding		UAP56-interacting factor2, binds single stranded RNA and, along with UIEF1,,appears to play a role in nuclear export of RNA.	hypothetical protein;(source:Araport11)
AT4G24000.1	protein_coding	cellulose synthase like G2	encodes a protein similar to cellulose synthase	cellulose synthase like G2;(source:Araport11)
AT4G23920.1	protein_coding	UDP-D-glucose/UDP-D-galactose 4-epimerase 2	Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in growth and cell wall carbohydrate biosynthesis.	UDP-D-glucose/UDP-D-galactose 4-epimerase 2;(source:Araport11)
AT4G24010.1	protein_coding	cellulose synthase like G1	encodes a protein similar to cellulose synthase	cellulose synthase like G1;(source:Araport11)
AT4G23840.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G23930.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT4G23850.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT4G23940.1	protein_coding	FtsH extracellular protease family	Encodes FtsHi1. Localizes to the chloroplast envelope membrane. Functions in chloroplast biogenesis and division.Strong interaction with TIC inner envelope protein translocon which consists of Tic20/Tic56/Tic100/Tic214(Ycf1)(DOI:10.1105/tpc.18.00357).	FtsH extracellular protease family;(source:Araport11)
AT4G23860.1	protein_coding	PHD finger protein-related		PHD finger protein-like protein;(source:Araport11)
AT4G23950.1	protein_coding	Galactose-binding protein	Encodes a member of the mid-SUN subfamily of SUN-domain proteins.  It is involved in early seed development and nuclear morphology.	Galactose-binding protein;(source:Araport11)
AT4G23870.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G23960.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G23880.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G08700.1	protein_coding	Drug/metabolite transporter superfamily protein	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	Drug/metabolite transporter superfamily protein;(source:Araport11)
AT4G08790.1	protein_coding	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein	NIT1 amidase involved in the breakdown of deaminated glutathione (dGSH). It is active towards dGSH and dOA with a preference for dGSH.	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein;(source:Araport11)
AT4G08710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1);(source:TAIR10)
AT4G08800.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G08720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.6e-65 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G08810.1	protein_coding	calcium ion binding	Calcium binding protein involved in cryptochrome and phytochrome coaction	calcium ion binding protein;(source:Araport11)
AT4G08730.1	protein_coding	RNA-binding protein		RNA-binding protein;(source:Araport11)
AT4G08820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1);(source:TAIR10)
AT4G08740.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G08830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.0e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G08750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08760.1);(source:TAIR10)
AT4G08840.1	protein_coding	pumilio 11	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 11;(source:Araport11)
AT4G08760.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G08850.1	protein_coding	Leucine-rich repeat receptor-like protein kinase family protein	MIK1 encodes a receptor kinase that forms a complex with MDIS1/MIK2 and binds LURE1, the female pollen guidance chemi-attractant. MIK1 phosphorylates MDIS1 and is autophosphorylated.	Leucine-rich repeat receptor-like protein kinase family protein;(source:Araport11)
AT4G08770.1	protein_coding	Peroxidase superfamily protein	Encodes a putative apoplastic peroxidase Prx37.  Primarily expressed in the vascular bundles.  Overexpression renders a dwarf phenotype with smaller plants and delayed development. Plants overexpressing Prx37 also shows an increase in the amount of esterified phenolic material associated with their walls.	Peroxidase superfamily protein;(source:Araport11)
AT4G08780.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT4G04960.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT4G07520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27160.1);(source:TAIR10)
AT4G07530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30810.1);(source:TAIR10)
AT4G07540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.2e-153 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G07470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30600.1);(source:TAIR10)
AT4G07560.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);transposon protein -related;(source:TAIR10)
AT4G07550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.2e-07 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G07480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19300.1);(source:TAIR10)
AT4G07490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);transposon protein -related;(source:TAIR10)
AT4G07500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09865.1);(source:TAIR10)
AT4G07510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42110.1);(source:TAIR10)
AT4G08620.1	protein_coding	sulphate transporter 1;1	Encodes a high-af®nity sulfate transporter. Contains STAS domain. Expressed in roots and guard cells. Up-regulated by sulfur deficiency.	sulfate transporter 1;(source:Araport11)
AT4G08630.1	protein_coding			fas-binding factor-like protein;(source:Araport11)
AT4G08640.1	protein_coding	ATP binding		ATP binding protein;(source:Araport11)
AT4G08650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein;(source:TAIR10)
AT4G08660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.0e-74 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G08670.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G08680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-46 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT4G08600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287;(source:TAIR10)
AT4G08610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.9e-87 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G08900.1	protein_coding	arginase	Encodes an arginase, likely to be involved in polyamine biosynthesis in pollen.	arginase;(source:Araport11)
AT4G08910.1	protein_coding			homeobox protein;(source:Araport11)
AT4G08920.1	protein_coding	cryptochrome 1	Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. Functions in perception of blue / green ratio of light.  The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change.  Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm.  CRY1 is present in the nucleus and cytoplasm.  Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings. The mRNA is cell-to-cell mobile.	cryptochrome 1;(source:Araport11)
AT4G08930.1	protein_coding	APR-like 6	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. The mRNA is cell-to-cell mobile.	APR-like 6;(source:Araport11)
AT4G08940.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT4G08870.1	protein_coding	Arginase/deacetylase superfamily protein	Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.  It is involved in the defense response to B.cinerea.	Arginase/deacetylase superfamily protein;(source:Araport11)
AT4G08960.1	protein_coding	phosphotyrosyl phosphatase activator (PTPA) family protein		phosphotyrosyl phosphatase activator (PTPA) family protein;(source:Araport11)
AT4G08950.1	protein_coding	Phosphate-responsive 1 family protein		Phosphate-responsive 1 family protein;(source:Araport11)
AT4G08880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1);(source:TAIR10)
AT4G08890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.6e-82 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G04700.1	protein_coding	calcium-dependent protein kinase 27	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 27;(source:Araport11)
AT4G04790.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G04710.1	protein_coding	calcium-dependent protein kinase 22	member of Calcium Dependent Protein Kinase	calcium-dependent kinase-like protein;(source:Araport11)
AT4G04800.1	protein_coding	methionine sulfoxide reductase B3		methionine sulfoxide reductase B3;(source:Araport11)
AT4G04720.1	protein_coding	calcium-dependent protein kinase 21	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 21;(source:Araport11)
AT4G04810.1	protein_coding	methionine sulfoxide reductase B4		methionine sulfoxide reductase B4;(source:Araport11)
AT4G04730.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT4G04820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G24930.1);(source:TAIR10)
AT4G04740.1	protein_coding	calcium-dependent protein kinase 23	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 23;(source:Araport11)
AT4G04830.1	protein_coding	methionine sulfoxide reductase B5		methionine sulfoxide reductase B5;(source:Araport11)
AT4G04750.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT4G04760.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT4G04840.1	protein_coding	methionine sulfoxide reductase B6		methionine sulfoxide reductase B6;(source:Araport11)
AT4G04850.1	protein_coding	K+ efflux antiporter 3	Encodes a potassium efflux antiporter; has three splice forms KEA3.1, KEA3.2, and KEA3.3, KEA3.2 is the most abundant splice form in all plant organs (silique, flower, leaf and root).  KEA3.1 and KEA3.3 are minor variants that can be found in flowers and in leaves. KEA3 is localized to the thylakoid membrane and  enriched in the stromal lamellae. It allows proton efflux from the thylakoid lumen by proton/potassium antiport.	K+ efflux antiporter 3;(source:Araport11)
AT4G04770.1	protein_coding	ATP binding cassette protein 1	Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast.	ATP binding cassette protein 1;(source:Araport11)
AT4G04860.1	protein_coding	DERLIN-2.2		DERLIN-2.2;(source:Araport11)
AT4G04780.1	protein_coding	mediator 21	Encodes the med21 subunit of the mediator complex which is involved in transcriptional regulation. MED21 interacts physically with the E3 ligase HUB1 and this interaction may be important in mediation defense responses to fungal pathogens.	mediator 21;(source:Araport11)
AT4G04870.1	protein_coding	cardiolipin synthase	Encodes a protein with cardiolipin synthase activity that is localized to the mitochondiria.	cardiolipin synthase;(source:Araport11)
AT4G04880.1	protein_coding	adenosine/AMP deaminase family protein	Encodes an N6-mAMP deaminase (ADAL, renamed MAPDA) that catabolizes N6-mAMP derived from turnover of m6A-modified RNA to inosine monophosphate in vivo by hydrolytically removing the aminomethyl group.	adenosine/AMP deaminase family protein;(source:Araport11)
AT4G12170.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT4G12260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 6.7e-21 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT4G12180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.2e-28 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G12270.1	protein_coding	Copper amine oxidase family protein		Copper amine oxidase family protein;(source:Araport11)
AT4G12190.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G12360.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G12280.1	protein_coding	copper amine oxidase family protein		copper amine oxidase family protein;(source:Araport11)
AT4G12200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to polyprotein [Oryza sativa] (GB:BAB03249.1);(source:TAIR10)
AT4G12370.1	protein_coding			F-box/kelch-repeat protein;(source:Araport11)
AT4G12290.1	protein_coding	Copper amine oxidase family protein	Copper amine oxidase. Induced by ABA and involved in stomatal closure.	Copper amine oxidase family protein;(source:Araport11)
AT4G12210.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G12300.1	protein_coding	cytochrome P450, family 706, subfamily A, polypeptide 4	member of CYP706A	cytochrome P450, family 706, subfamily A, polypeptide 4;(source:Araport11)
AT4G12220.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G12310.1	protein_coding	cytochrome P450, family 706, subfamily A, polypeptide 5	member of CYP706A	cytochrome P450, family 706, subfamily A, polypeptide 5;(source:Araport11)
AT4G12230.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G12320.1	protein_coding	cytochrome P450, family 706, subfamily A, polypeptide 6	member of CYP706A	cytochrome P450, family 706, subfamily A, polypeptide 6;(source:Araport11)
AT4G12240.1	protein_coding	zinc finger (C2H2 type) family protein		zinc finger (C2H2 type) family protein;(source:Araport11)
AT4G12330.1	protein_coding	cytochrome P450, family 706, subfamily A, polypeptide 7	member of CYP706A	cytochrome P450, family 706, subfamily A, polypeptide 7;(source:Araport11)
AT4G12250.1	protein_coding	UDP-D-glucuronate 4-epimerase 5	UDP-D-glucuronate 4-epimerase	UDP-D-glucuronate 4-epimerase 5;(source:Araport11)
AT4G12340.1	protein_coding	copper ion binding		copper ion binding protein;(source:Araport11)
AT4G12350.1	protein_coding	myb domain protein 42	Encodes a putative transcription factor (MYB42).	myb domain protein 42;(source:Araport11)
AT4G10640.1	protein_coding	IQ-domain 16	Overexpression of IQD16 in transgenic Arabidopsis Pro35:IQD16 lines alters microtubule organization, cell shape, and plant growth. Phenotypes are reminiscent of lng1-1D plants, which overexpress LNG1/TRM2. IQD16 induces elongation of aerial tissues.	IQ-domain 16;(source:Araport11)
AT4G10560.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G10570.1	protein_coding	ubiquitin-specific protease 9	encodes a ubiquitin-specific protease family member, UBP9.	ubiquitin-specific protease 9;(source:Araport11)
AT4G10580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.1e-306 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G10590.1	protein_coding	ubiquitin-specific protease 10	encodes a member of the ubiquitin-specific protease family, UBP10	ubiquitin-specific protease 10;(source:Araport11)
AT4G10600.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT4G10610.1	protein_coding	CTC-interacting domain 12	RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif).	CTC-interacting domain 12;(source:Araport11)
AT4G10620.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G10630.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT4G03000.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G03010.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G03020.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G02940.1	protein_coding	oxidoreductase, 2OG-Fe(II) oxygenase family protein	ALKBH10B is a functional RNA N6-methyladenosine demethylase. Reduction in ALKBH10B decreases m6A levels, and affects the stability of flowering time genes including FT, SPL3 and SPL9.  Mutant plants are early flowering.	oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT4G03030.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G02950.1	protein_coding	Ubiquitin family protein		Ubiquitin family protein;(source:Araport11)
AT4G03040.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G02960.1	transposable_element_gene	transposable element gene	a copia-type retrotransposon element containing LTRs and encoding a polyprotein. This retro element exists in two loci in Landsberg erecta but only once in Columbia	transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT4G03050.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. AOP3 is transcriptionally silent in leaf tissues of ecotype Col.The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.	2-oxoglutarate-dependent dioxygenase;(source:Araport11)
AT4G02970.1	protein_coding	7SL RNA1	Signal recognition particle. Type 4 of RNA polymerase III dependent genes.	7SL RNA1;(source:Araport11)
AT4G03060.1	pseudogene	AOP2 (ALKENYL HYDROXALKYL PRODUCING 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.	pseudogene of 2-oxoglutarate-dependent dioxygenase;(source:Araport11)
AT4G02980.1	protein_coding	endoplasmic reticulum auxin binding protein 1	Auxin binding protein involved in cell elongation and cell division. ABP1 is ubiquitinated in vitro and in planta by AtRma2. ABP1 was thought to be embryo lethal but further experimentation has demonstrated that lethality is due to a linked mutation in another gene.	endoplasmic reticulum auxin binding protein 1;(source:Araport11)
AT4G03070.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally.  In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G02990.1	protein_coding	Mitochondrial transcription termination factor family protein	Encodes BELAYA SMERT (BSM), a plastid-localized protein homologous to mitochondrial transcription termination factors (mTERF) found in animal. Mutant bsm cells are albino, are compromised in growth, and suffer defects in global plastidic gene expression. The mRNA is cell-to-cell mobile.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT4G03080.1	protein_coding	BRI1 suppressor 1 (BSU1)-like 1		BRI1 suppressor 1 (BSU1)-like 1;(source:Araport11)
AT4G03090.1	protein_coding	sequence-specific DNA binding;sequence-specific DNA binding transcription factors		sequence-specific DNA binding transcription factor ATNDX;(source:Araport11)
AT4G34530.1	protein_coding	cryptochrome-interacting basic-helix-loop-helix 1	Encodes a transcription factor CIB1 (cryptochrome-interacting basic-helix-loop-helix). CIB1 interacts with CRY2 (cryptochrome 2) in a blue light-specific manner in yeast and Arabidopsis cells, and it acts together with additional CIB1-related proteins to promote CRY2-dependent floral initiation. CIB1 positively regulates FT expression.	cryptochrome-interacting basic-helix-loop-helix 1;(source:Araport11)
AT4G34460.1	protein_coding	GTP binding protein beta 1	Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER.  Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase.  It seems to be involved in the calcium-mediated response to extracellular ATP.	GTP binding protein beta 1;(source:Araport11)
AT4G34540.1	protein_coding	NmrA-like negative transcriptional regulator family protein	Encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine. Plays a positive role in developmental and dark -induced leaf senescence.	NmrA-like negative transcriptional regulator family protein;(source:Araport11)
AT4G34630.1	protein_coding			prostatic spermine-binding-like protein;(source:Araport11)
AT4G34470.1	protein_coding	SKP1-like 12		SKP1-like 12;(source:Araport11)
AT4G34550.1	protein_coding			F-box protein;(source:Araport11)
AT4G34640.1	protein_coding	squalene synthase 1	Encodes squalene synthase, which converts two molecules of farnesyl diphosphate (FPP) into squalene via an intermediate: presqualene diphosphate (PSPP). It is generally thought to be one of the key enzymes of sterol biosynthesis, since it catalyzes the first pathway-specific reaction of the sterol branch of the isoprenoid pathway. The mRNA is cell-to-cell mobile.	squalene synthase 1;(source:Araport11)
AT4G34480.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT4G34560.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G34730.1	protein_coding	ribosome-binding factor A family protein		ribosome-binding factor A family protein;(source:Araport11)
AT4G34650.1	protein_coding	squalene synthase 2	Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.	squalene synthase 2;(source:Araport11)
AT4G34490.1	protein_coding	cyclase associated protein 1	CYCLASE ASSOCIATED PROTEIN	cyclase associated protein 1;(source:Araport11)
AT4G34570.1	protein_coding	thymidylate synthase 2	Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene. This is unique in Arabidopsis and protozoa. Other organisms have independent genes for this function.	thymidylate synthase 2;(source:Araport11)
AT4G34660.1	protein_coding	SH3 domain-containing protein		SH3 domain-containing protein;(source:Araport11)
AT4G34500.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G34580.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein	Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth.	Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT4G34670.1	protein_coding	Ribosomal protein S3Ae		Ribosomal protein S3Ae;(source:Araport11)
AT4G34510.1	protein_coding	3-ketoacyl-CoA synthase 17	Encodes KCS17, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 17;(source:Araport11)
AT4G34590.1	protein_coding	G-box binding factor 6	Encodes a basic domain leucine zipper (bZip) transcription factor bZIP11. Translation is repressed by sucrose. Directly regulates gene expression of ASN1 and ProDH2, which are enzyme-coding genes involved in amino acid metabolism.	G-box binding factor 6;(source:Araport11)
AT4G34680.1	protein_coding	GATA transcription factor 3	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 3;(source:Araport11)
AT4G34520.1	protein_coding	3-ketoacyl-CoA synthase 18	Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 18;(source:Araport11)
AT4G34600.1	protein_coding		CAF2 is a peptide hormone expressed in the root stele that specifically binds the endodermis-expressed leucine-rich repeat receptor kinase GASSHO1 (GSO1)/SCHENGEN3 and its homolog, GSO2. Together with CAF1 it is required for formation of the casparian band.	transmembrane protein;(source:Araport11)
AT4G34690.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G34610.1	protein_coding	BEL1-like homeodomain 6		BEL1-like homeodomain 6;(source:Araport11)
AT4G34700.1	protein_coding	LYR family of Fe/S cluster biogenesis protein	Encodes the B22 subunit of eukaryotic mitochondrial Complex I. Mutation in the gene display pleiotropic phenotypes including shorter roots, smaller plants and delayed flowering. The mRNA is cell-to-cell mobile.	LYR family of Fe/S cluster biogenesis protein;(source:Araport11)
AT4G34620.1	protein_coding	small subunit ribosomal protein 16	Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype	small subunit ribosomal protein 16;(source:Araport11)
AT4G34710.1	protein_coding	arginine decarboxylase 2	Encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.	arginine decarboxylase 2;(source:Araport11)
AT4G34720.1	protein_coding	ATPase, F0/V0 complex, subunit C protein	vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1)	ATPase, F0/V0 complex, subunit C protein;(source:Araport11)
AT4G11750.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G11760.1	protein_coding	low-molecular-weight cysteine-rich 17	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 17;(source:Araport11)
AT4G11580.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G11590.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT4G11670.1	protein_coding	Protein of unknown function (DUF810)		DNA topoisomerase 4 subunit B (DUF810);(source:Araport11)
AT4G11600.1	protein_coding	glutathione peroxidase 6	Encodes glutathione peroxidase.	glutathione peroxidase 6;(source:Araport11)
AT4G11680.1	protein_coding	Zinc finger, C3HC4 type (RING finger) family protein		Zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT4G11770.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G11610.1	protein_coding	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein		C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT4G11690.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein	Encodes ABO8, a pentatricopeptide repeat (PPR) protein responsible for the splicing of NAD4 intron 3 in mitochondrial complex I. Abo8 mutants accumulate more reactive oxygen species (ROS) in root tips than the wild type.	Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT4G11780.1	protein_coding			GAR2-like protein;(source:Araport11)
AT4G11700.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT4G11790.1	protein_coding	Pleckstrin homology (PH) domain superfamily protein		Pleckstrin homology (PH) domain superfamily protein;(source:Araport11)
AT4G11630.1	protein_coding	Ribosomal protein L19 family protein		Ribosomal protein L19 family protein;(source:Araport11)
AT4G11710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1);(source:TAIR10)
AT4G11640.1	protein_coding	serine racemase	Serine racemase, which is a bifunctional PLP-dependent enzyme catalyzing racemization  of serine and dehydration of serine to pyruvate in the same way as mammalian serine racemases. similar to mammalian serine racemases.	serine racemase;(source:Araport11)
AT4G11720.1	protein_coding	hapless 2	Encodes HAP2 with the following predicted motifs: an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain.  HAP2 is expressed only in the haploid sperm and is required for pollen tube guidance and fertilization.  Predominantly localized to sperm endoplasmic reticulum membranes.  May also reside in other endomembranes, including the plasma membrane. Target promoter of the male germline-specific transcription factor DUO1.	hapless 2;(source:Araport11)
AT4G11650.1	protein_coding	osmotin 34	osmotin-like protein	osmotin 34;(source:Araport11)
AT4G11730.1	protein_coding	Cation transporter/ E1-E2 ATPase family protein		Cation transporter/ E1-E2 ATPase family protein;(source:Araport11)
AT4G11740.1	protein_coding	Ubiquitin-like superfamily protein	Isolated as a suppressor of a dominant mutant in the Ara4 gene that was expressed in yeast ypt1 mutant strains. A novel protein with a small region of similarity to coil-coiled domain of yeast VSP27 protein.	Ubiquitin-like superfamily protein;(source:Araport11)
AT4G11660.1	protein_coding	winged-helix DNA-binding transcription factor family protein	member of Heat Stress Transcription Factor (Hsf) family	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT4G28670.1	protein_coding	Protein kinase family protein with domain of unknown function (DUF26)		cysteine-rich RECEPTOR-like kinase, putative (DUF26);(source:Araport11)
AT4G28590.1	protein_coding			polyadenylate-binding protein 2-binding protein;(source:Araport11)
AT4G28680.1	protein_coding	L-tyrosine decarboxylase	Encodes a stress-induced tyrosine   decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine.  Recombinant TyrDC forms tetramers.	L-tyrosine decarboxylase;(source:Araport11)
AT4G28600.1	protein_coding	no pollen germination related 2	encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.	no pollen germination related 2;(source:Araport11)
AT4G28610.1	protein_coding	phosphate starvation response  1	Similar to phosphate starvation response gene from Chlamydomonas. Weakly responsive to phosphate starvation. Acts upstream of PHO2 in phosphate signaling. Its expression is responsive to both phosphate (Pi) and phosphite (Phi) in shoots.	phosphate starvation response 1;(source:Araport11)
AT4G28620.1	protein_coding	ABC transporter of the mitochondrion 2	Half-molecule ABC transporter ATM2. Arabidopsis thaliana has three ATM genes, namely ATM1, ATM2 and ATM3. Only ATM3 has an important function for plant growth.	ABC transporter of the mitochondrion 2;(source:Araport11)
AT4G28630.1	protein_coding	ABC transporter of the mitochondrion 1	Half-molecule ABC transporter ATM1. Arabidopsis thaliana has three ATM genes, namely ATM1, ATM2 and ATM3. Only ATM3 has an important function for plant growth.	ABC transporter of the mitochondrion 1;(source:Araport11)
AT4G28650.1	protein_coding	Leucine-rich repeat transmembrane protein kinase family protein	Encodes one of the two putative eLRR kinase closely related to PXY (At1g08590/PXL1 and At4g28650/PXL2). Insertion mutants in either pxl1 or pxl2 do not exhibit an obvious phenotype in the stem; double-mutant combinations of a Col allele, of pxy (pxy-3) with pxl1 and pxl2, generate a more severe vascular phenotype than pxy-3 alone, suggesting that these genes act synergistically with PXY in regulating vascular-tissue development in the stem.	Leucine-rich repeat transmembrane protein kinase family protein;(source:Araport11)
AT4G28640.1	protein_coding	indole-3-acetic acid inducible 11	Auxin induced gene, IAA11  (IAA11). Check the Comments field on the locus page to view updated sequence annotation.	indole-3-acetic acid inducible 11;(source:Araport11)
AT4G28570.1	protein_coding	Long-chain fatty alcohol dehydrogenase family protein		Long-chain fatty alcohol dehydrogenase family protein;(source:Araport11)
AT4G28660.1	protein_coding	photosystem II reaction center PSB28 protein	Similar to PsbW subunit of photosystem II.	photosystem II reaction center PSB28 protein;(source:Araport11)
AT4G28580.1	protein_coding	magnesium transport 5	Transmembrane magnesium transporter that induces Mg transport from tapetum cell to locule. One of nine family members. Functions in pollen development.	magnesium transport 5;(source:Araport11)
AT4G03780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-59 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G03790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.2e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G03800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.5e-125 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G39840.1	protein_coding			cell wall integrity/stress response component-like protein;(source:Araport11)
AT4G39850.1	protein_coding	peroxisomal ABC transporter 1	Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.	peroxisomal ABC transporter 1;(source:Araport11)
AT4G39930.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G39860.1	protein_coding			hematological/neurological-like protein;(source:Araport11)
AT4G39940.1	protein_coding	APS-kinase 2	adenosine-5'-phosphosulfate-kinase (akn2) mRNA, complete The mRNA is cell-to-cell mobile.	APS-kinase 2;(source:Araport11)
AT4G40030.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT4G39870.1	protein_coding	TLD-domain containing nucleolar protein		TLD-domain containing nucleolar protein;(source:Araport11)
AT4G39950.1	protein_coding	cytochrome P450, family 79, subfamily B, polypeptide 2	Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. The mRNA is cell-to-cell mobile.	cytochrome P450, family 79, subfamily B, polypeptide 2;(source:Araport11)
AT4G40040.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT4G39880.1	protein_coding	Ribosomal protein L23/L15e family protein		Ribosomal protein L23/L15e family protein;(source:Araport11)
AT4G39960.1	protein_coding	Molecular chaperone Hsp40/DnaJ family protein		Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT4G40050.1	protein_coding	Protein of unknown function (DUF3550/UPF0682)		signal transducer, putative (DUF3550/UPF0682);(source:Araport11)
AT4G39890.1	protein_coding	RAB GTPase homolog H1C		RAB GTPase homolog H1C;(source:Araport11)
AT4G39970.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT4G40060.1	protein_coding	homeobox protein 16	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	homeobox protein 16;(source:Araport11)
AT4G39900.1	protein_coding			adenine deaminase;(source:Araport11)
AT4G39980.1	protein_coding	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1	Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae. The mRNA is cell-to-cell mobile.	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1;(source:Araport11)
AT4G40070.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G39910.1	protein_coding	ubiquitin-specific protease 3	Encodes a nuclear ubiquitin-specific protease.	ubiquitin-specific protease 3;(source:Araport11)
AT4G39990.1	protein_coding	RAB GTPase homolog A4B	GTP-binding protein ATGB3	RAB GTPase homolog A4B;(source:Araport11)
AT4G40080.1	protein_coding	ENTH/ANTH/VHS superfamily protein		ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT4G39920.1	protein_coding	C-CAP/cofactor C-like domain-containing protein	Microtubule-folding cofactor, produces assembly-competent alpha-/beta-tubulin heterodimers.	C-CAP/cofactor C-like domain-containing protein;(source:Araport11)
AT4G40000.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G40090.1	protein_coding	arabinogalactan protein 3		arabinogalactan protein 3;(source:Araport11)
AT4G40010.1	protein_coding	SNF1-related protein kinase 2.7	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.	SNF1-related protein kinase 2.7;(source:Araport11)
AT4G40100.1	protein_coding	GRAM domain family protein	Encodes PRSL1 (PP1 regulatory subunit2-like protein1). Functions as a regulatory subunit of PP1 (protein phosphatase 1) and regulates blue light signaling in stomata.	GRAM domain family protein;(source:Araport11)
AT4G40020.1	protein_coding	Myosin heavy chain-related protein		Myosin heavy chain-related protein;(source:Araport11)
AT4G02880.1	protein_coding			ELKS/Rab6-interacting/CAST family protein;(source:Araport11)
AT4G02800.1	protein_coding			GRIP/coiled-coil protein;(source:Araport11)
AT4G02890.1	protein_coding	Ubiquitin family protein	Polyubiquitin gene containing 4 ubiquitin repeats.	Ubiquitin family protein;(source:Araport11)
AT4G02810.1	protein_coding	Protein of unknown function (DUF3049)	A member of the FAF family proteins encoded by the FANTASTIC FOUR (FAF) genes:   AT4G02810 (FAF1), AT1G03170 (FAF2), AT5G19260 (FAF3) and AT3G06020 (FAF4).  FAFs have the potential to regulate shoot meristem size in Arabidopsis thaliana. FAFs can repress WUS, which ultimately leads to an arrest of meristem activity in FAF overexpressing lines.	FANTASTIC four-like protein (DUF3049);(source:Araport11)
AT4G02900.1	protein_coding	ERD (early-responsive to dehydration stress) family protein		ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G02820.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G02740.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G02830.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G02750.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G02840.1	protein_coding	Small nuclear ribonucleoprotein family protein	SmD1b is one of two Yeast SmD1 orthologs, the other being SmD1a.SmD1b accumulates to higher levels than SmD1a.It is localized to the nucleolus and nuclear speckles and appears to have a role in RNA splicing and indirectly facilitating PTGS.	Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT4G02760.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G02850.1	protein_coding	phenazine biosynthesis PhzC/PhzF family protein	DAAR1 encodes a PLP-independent racemase that catalyzes the conversion from L-Ile to D-allo-Ile.	phenazine biosynthesis PhzC/PhzF family protein;(source:Araport11)
AT4G02770.1	protein_coding	photosystem I subunit D-1	Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1)	photosystem I subunit D-1;(source:Araport11)
AT4G02780.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein	Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis	Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT4G02860.1	protein_coding	Phenazine biosynthesis PhzC/PhzF protein		Phenazine biosynthesis PhzC/PhzF protein;(source:Araport11)
AT4G02790.1	protein_coding	GTP-binding family protein	Encodes a GTPase that is targeted to chloroplasts and co-fractionated with chloroplast ribosomes. Mutants are embryo lethal due to this essential function being lost.	GTP-binding family protein;(source:Araport11)
AT4G02870.1	protein_coding			B3 domain protein;(source:Araport11)
AT4G19240.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G19330.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	Encodes a Kelch Repeat F-box protein involved in seed germination. In the current Araport11 annotation, At4g19330 is misannotated and is actually comprised of two genes with the more 3&#8242; gene being intronless and producing a transcript encoding the F-box protein. The other encodes a ribonucleoprotein (10.1016/j.plgene.2017.05.012).	kelch repeat F-box protein;(source:Araport11)
AT4G19250.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G19340.1	protein_coding	SCD6 protein-related		SCD6 protein-like protein;(source:Araport11)
AT4G19260.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G19430.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G19350.1	protein_coding	embryo defective 3006		embryo defective 3006;(source:Araport11)
AT4G19270.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G19440.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G19360.1	protein_coding	SCD6 protein-related		SCD6 protein-like protein;(source:Araport11)
AT4G19280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35080.1);(source:TAIR10)
AT4G19450.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT4G19370.1	protein_coding	Protein of unknown function (DUF1218)		chitin synthase, putative (DUF1218);(source:Araport11)
AT4G19290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36060.1);(source:TAIR10)
AT4G19380.1	protein_coding	Long-chain fatty alcohol dehydrogenase family protein		Long-chain fatty alcohol dehydrogenase family protein;(source:Araport11)
AT4G19300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36050.1);(source:TAIR10)
AT4G19390.1	protein_coding	Uncharacterised protein family (UPF0114)		Uncharacterized protein family (UPF0114);(source:Araport11)
AT4G19310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35110.1);(source:TAIR10)
AT4G19400.1	protein_coding	Profilin family protein		Profilin family protein;(source:Araport11)
AT4G19320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52087.1);(source:TAIR10)
AT4G19410.1	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT4G19420.1	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT4G09980.1	protein_coding	Methyltransferase MT-A70 family protein	Encodes a member of a core set of mRNA m6A writer proteins and is required for N6-adenosine methylation of mRNA.	Methyltransferase MT-A70 family protein;(source:Araport11)
AT4G09990.1	protein_coding	Protein of unknown function (DUF579)		glucuronoxylan 4-O-methyltransferase-like protein (DUF579);(source:Araport11)
AT4G10000.1	protein_coding	Thioredoxin family protein		Thioredoxin family protein;(source:Araport11)
AT4G10010.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G09930.1	protein_coding	Avirulence induced gene (AIG1) family protein		Avirulence induced gene (AIG1) family protein;(source:Araport11)
AT4G10020.1	protein_coding	hydroxysteroid dehydrogenase 5	Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include:   At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463).  Two copies of HSD1 and HSD4 exist due to a gene duplication event.  In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.	hydroxysteroid dehydrogenase 5;(source:Araport11)
AT4G09940.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G10030.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Alpha/beta hydrolase domain containing protein involved in lipid biosynthesis.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G09950.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G09960.1	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a MADS box transcription factor expressed in the carpel and ovules. Plays a maternal role in fertilization and seed development. Controls the structure and mechanical properties of the seed coat.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT4G09970.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G03570.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT4G03580.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G03660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT4G07440.1);(source:TAIR10)
AT4G03590.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT4G03670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10836.1);(source:TAIR10)
AT4G03760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, expressed protein;(source:TAIR10)
AT4G03600.1	protein_coding			pyrroline-5-carboxylate reductase;(source:Araport11)
AT4G03680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30560.1);(source:TAIR10)
AT4G03610.1	protein_coding	Metallo-hydrolase/oxidoreductase superfamily protein		Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT4G03690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30560.1);(source:TAIR10)
AT4G03620.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT4G03700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, replication protein-related, similar to  immunoglobulin heavy chain variable region (GI:4456528) (Homo sapiens);(source:TAIR10)
AT4G03630.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G03710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.8e-111 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT4G03640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43100.1);(source:TAIR10)
AT4G03720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase,  blastp match of 44%25 identity and 1.5e-21 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus};(source:TAIR10)
AT4G03650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.3e-314 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G03730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.3e-102 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT4G03740.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G03750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16900.1);(source:TAIR10)
AT4G13540.1	protein_coding		ADR is a peroxisome localized, myristoylated protein. It is expressed in flowers and plays a role in suppressing ROS accumulation in anthers. Overexpression results in reduced ROS, lower levels of NST1 and NST2 and, consequently alterations in lignification of the anther endothecium resulting in male sterility.	golgin family A protein;(source:Araport11)
AT4G13460.1	protein_coding	SU(VAR)3-9 homolog 9	Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A plant line expressing an RNAi construct directed against  this gene has reduced agrobacterium-mediated tumor formation.	SU(VAR)3-9 homolog 9;(source:Araport11)
AT4G13550.1	protein_coding	triglyceride lipases;triglyceride lipases	Heat stress inducible plastid monogalactosyldiacylglycerol lipase.	putative triglyceride lipase;(source:Araport11)
AT4G13470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24255.1);(source:TAIR10)
AT4G13560.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT4G13480.1	protein_coding	myb domain protein 79	Member of the R2R3 factor gene family.	myb domain protein 79;(source:Araport11)
AT4G13570.1	protein_coding	histone H2A 4	Encodes HTA4, a histone H2A protein. The mRNA is cell-to-cell mobile.	histone H2A 4;(source:Araport11)
AT4G13490.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G13580.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT4G13500.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G13590.1	protein_coding	Uncharacterized protein family (UPF0016)	Chloroplast manganese transporter required for chloroplast manganese homeostasis and photosynthetic function.	Uncharacterized protein family (UPF0016);(source:Araport11)
AT4G13510.1	protein_coding	ammonium transporter 1;1	Encodes a plasma membrane localized ammonium transporter.  Contains a cytosolic trans-activation domain essential for ammonium uptake. The mRNA is cell-to-cell mobile.	ammonium transporter 1;(source:Araport11)
AT4G13600.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT4G13520.1	protein_coding	small acidic protein 1	Encodes a small acid protein (SMAP1) that mediates responses Arabidopsis root to the synthetic auxin 2,4-Dichlorophenoxyacetic acid. The mRNA is cell-to-cell mobile.	small acidic protein 1;(source:Araport11)
AT4G13610.1	protein_coding	DNA (cytosine-5-)-methyltransferase family protein		DNA (cytosine-5-)-methyltransferase family protein;(source:Araport11)
AT4G13530.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G17840.1	protein_coding			CAAX protease self-immunity protein;(source:Araport11)
AT4G17920.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G17850.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G18020.1	protein_coding	CheY-like two-component responsive regulator family protein	Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).	CheY-like two-component responsive regulator family protein;(source:Araport11)
AT4G17860.1	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal proteinase-like protein, putative (DUF239);(source:Araport11)
AT4G17940.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G18030.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G17870.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein	Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.	Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT4G17950.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT4G17960.1	protein_coding			phospholipid hydroperoxide glutathione peroxidase;(source:Araport11)
AT4G17880.1	protein_coding	Basic helix-loop-helix (bHLH) DNA-binding family protein	MYC4 is bHLH transcriptional regulator. It functions  as a JAZ-interacting transcription factor that acts together with MYC2 and MYC3 to activate JA-responses. It also functions in blue light mediated secondary cell wall biogenesis via regulation of NST1 expression. MYC4 directly binds to NST1 promoter and activates its expression.	Basic helix-loop-helix (bHLH) DNA-binding family protein;(source:Araport11)
AT4G17890.1	protein_coding	ARF-GAP domain 8	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	ARF-GAP domain 8;(source:Araport11)
AT4G17970.1	protein_coding	aluminum-activated, malate transporter 12	Anion transporter involved  in stomatal closure. Gene has 3 splicing variants.	aluminum-activated, malate transporter 12;(source:Araport11)
AT4G17900.1	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT4G17980.1	protein_coding	NAC domain containing protein 71	Encodes ANAC071, a transcription factor involved in cell proliferation in incised inflorescence stems.	NAC domain containing protein 71;(source:Araport11)
AT4G17910.1	protein_coding	transferases, transferring acyl groups		transferases, transferring acyl groups;(source:Araport11)
AT4G17990.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G18010.1	protein_coding	myo-inositol polyphosphate 5-phosphatase 2	Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not appear to be active against phosphatidylinositol 4,5 bisphosphate. Overexpression of this gene renders plants insensitive to ABA in germination and growth assays.	myo-inositol polyphosphate 5-phosphatase 2;(source:Araport11)
AT4G21370.1	pseudogene	S-locus protein kinase, putative	The Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1.	pseudogene of receptor kinase 3;(source:Araport11)
AT4G21300.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G21390.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT4G21380.1	protein_coding	receptor kinase 3	encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.	receptor kinase 3;(source:Araport11)
AT4G21310.1	protein_coding	Protein of unknown function (DUF1218)	DUF1218 family member.	transmembrane protein, putative (DUF1218);(source:Araport11)
AT4G21320.1	protein_coding	Aldolase-type TIM barrel family protein	Encodes heat-stress-associated 32-kD protein. Up-regulated by heat shock. Thermotolerance in a knockout mutant was compromised following a long recovery period (> 24 h) after acclimation heat shock treatment.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT4G21330.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a bHLH transcription factor strongly expressed in the tapetum from late anther stage 5 to early stage 6, and at a lower level in meiocytes. dyt1 mutant exhibits abnormal anther morphology beginning at anther stage 4. DYT1 acts downstream of SPL/NZZ and EMS1/EXS , and regulates the expression of downstream genes like AMS, MS1 and other tapetum preferential genes for pollen development, primarily via TDF1.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G21340.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G21350.1	protein_coding	plant U-box 8	Encodes a U-box/ARM repeat protein required fore self-incompatibility.	plant U-box 8;(source:Araport11)
AT4G21360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G07740.1	protein_coding	Protein of unknown function (DUF3287)		hypothetical protein (DUF3287);(source:Araport11)
AT4G07750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.9e-168 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G07760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 5.4e-220 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT4G01800.1	protein_coding	Albino or Glassy Yellow 1	Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression.	Albino or Glassy Yellow 1;(source:Araport11)
AT4G01810.1	protein_coding	Sec23/Sec24 protein transport family protein	Sec23 homolog , forms a distinct clade with SEC23D.Mutants have defects in pollen exine patterning, tapetal development and pollen intine formation.	Sec23/Sec24 protein transport family protein;(source:Araport11)
AT4G01890.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G01820.1	protein_coding	P-glycoprotein 3	member of MDR subfamily	P-glycoprotein 3;(source:Araport11)
AT4G01900.1	protein_coding	GLNB1 homolog	encodes a PII protein that may function as part of a signal transduction network involved in perceiving the status of carbon and organic nitrogen. Forms a protein complex with N-acetylglutamate kinase and regulates the kinase activity by relieving the feedback inhibition of the kinase by arginine.  Regulates acetyl-CoA carboxylase activity.	nitrogen regulatory P-II-like protein;(source:Araport11)
AT4G01990.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G01830.1	protein_coding	P-glycoprotein 5		P-glycoprotein 5;(source:Araport11)
AT4G01910.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G01840.1	protein_coding	Ca2+ activated outward rectifying K+ channel 5	Encodes AtTPK5, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins.  AtTPK5 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.	Ca2+ activated outward rectifying K+ channel 5;(source:Araport11)
AT4G01920.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G01850.1	protein_coding	S-adenosylmethionine synthetase 2		S-adenosylmethionine synthetase 2;(source:Araport11)
AT4G01930.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G01860.1	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G01940.1	protein_coding	NFU domain protein 1	Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast.	NFU domain protein 1;(source:Araport11)
AT4G01870.1	protein_coding	tolB protein-related		tolB protein-like protein;(source:Araport11)
AT4G01950.1	protein_coding	glycerol-3-phosphate acyltransferase 3	putative sn-glycerol-3-phosphate 2-O-acyltransferase	glycerol-3-phosphate acyltransferase 3;(source:Araport11)
AT4G01880.1	protein_coding	methyltransferases		methyltransferase;(source:Araport11)
AT4G01960.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G01970.1	protein_coding	stachyose synthase	Encodes a a raffinose and high affinity stachyose synthase as well as a stachyose and Gol specific galactosylhydrolase enzyme activity.AtRS4 is a sequential multifunctional RafS and StaS as well as a high affinity StaS, accepting only Raf and Gol for Sta product formation.  AtRS4 possesses a Sta and Gol specific galactosylhydrolase enzyme activity.	stachyose synthase;(source:Araport11)
AT4G01980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to myb family protein [Arabidopsis thaliana] (TAIR:AT2G22710.1);(source:TAIR10)
AT4G03810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT4G03820.1	protein_coding	Protein of unknown function (DUF3537)		transmembrane protein, putative (DUF3537);(source:Araport11)
AT4G03830.1	protein_coding	Protein of unknown function, DUF601		hypothetical protein (Protein of unknown function, DUF601);(source:Araport11)
AT4G03840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.4e-251 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G03850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-131 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G03860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);transposon protein -related, similar to athila retroelement;(source:TAIR10)
AT4G03870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-61 P-value blast match to O81510 /24-166 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G09160.1	protein_coding	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	PATLs belong to a family of proteins having a Golgi dynamics (GOLD) domain in tandem with the Sec14p-like domain. PATLs are auxin regulated. Quadruple mutants (patl2456)  show altered PIN1 lateralization in root endodermis cells.	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein;(source:Araport11)
AT4G09170.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G09180.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G21870.1	protein_coding	HSP20-like chaperones superfamily protein	HSP20-like chaperone	HSP20-like chaperones superfamily protein;(source:Araport11)
AT4G21880.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G21890.1	protein_coding			zinc finger MYND domain protein;(source:Araport11)
AT4G21810.1	protein_coding	DERLIN-2.1		DERLIN-2.1;(source:Araport11)
AT4G21820.1	protein_coding	binding;calmodulin binding		binding / calmodulin binding protein;(source:Araport11)
AT4G21900.1	protein_coding	proteinaceous RNase P 3	Encodes a proteinaceous RNase P that supports RNase P activity in vivo in both organelles and the nucleus. It is also involved in the maturation of small nucleolar RNA (snoRNA) and mRNA.	proteinaceous RNase P 3;(source:Araport11)
AT4G21830.1	protein_coding	methionine sulfoxide reductase B7		methionine sulfoxide reductase B7;(source:Araport11)
AT4G21910.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT4G21840.1	protein_coding	methionine sulfoxide reductase B8		methionine sulfoxide reductase B8;(source:Araport11)
AT4G21850.1	protein_coding	methionine sulfoxide reductase B9		methionine sulfoxide reductase B9;(source:Araport11)
AT4G21860.1	protein_coding	methionine sulfoxide reductase B 2		methionine sulfoxide reductase B 2;(source:Araport11)
AT4G38730.1	protein_coding	Protein of unknown function (DUF803)		magnesium transporter, putative (DUF803);(source:Araport11)
AT4G38740.1	protein_coding	rotamase CYP 1	Encodes cytosolic cyclophilin ROC1.	rotamase CYP 1;(source:Araport11)
AT4G38820.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G38830.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 26	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 26;(source:Araport11)
AT4G38760.1	protein_coding	Protein of unknown function (DUF3414)		nucleoporin (DUF3414);(source:Araport11)
AT4G38770.1	protein_coding	proline-rich protein 4	Encodes one of four proline-rich proteins in Arabidopsis which are predicted to localize to the cell wall.  Transcripts are most abundant in aerial organs of the plant.	proline-rich protein 4;(source:Araport11)
AT4G38780.1	protein_coding	Pre-mRNA-processing-splicing factor		pre-mRNA-processing-splicing factor-like protein;(source:Araport11)
AT4G38790.1	protein_coding	ER lumen protein retaining receptor family protein		ER lumen protein retaining receptor family protein;(source:Araport11)
AT4G38800.1	protein_coding	methylthioadenosine nucleosidase 1	Encodes one of the 5'-methylthioadenosine nucleosidases (AT4G38800/MTN1; AT4G34840/MTN2). Double mutant, mtn1-1mtn2-1, retains approximately 14% of the MTN enzyme activity present in the wild type and displays a pleiotropic phenotype that includes altered vasculature and impaired fertility.	methylthioadenosine nucleosidase 1;(source:Araport11)
AT4G38810.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT4G18330.1	protein_coding	Translation elongation factor EF1A/initiation factor IF2gamma family protein		Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT4G18250.1	protein_coding	receptor serine/threonine kinase, putative		receptor Serine/Threonine kinase-like protein;(source:Araport11)
AT4G18340.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT4G18260.1	protein_coding	Cytochrome b561/ferric reductase transmembrane protein family		Cytochrome b561/ferric reductase transmembrane protein family;(source:Araport11)
AT4G18270.1	protein_coding	translocase 11	Encodes protein similar to similar to bacterial translocase I (mra Y).  Expressed during flower bud development.	translocase 11;(source:Araport11)
AT4G18280.1	protein_coding	glycine-rich cell wall protein-related	Encodes a gene whose transcription is induced in response to potassium-deficiency and salt stress.	glycine-rich cell wall protein-like protein;(source:Araport11)
AT4G18210.1	protein_coding	purine permease 10	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. The mRNA is cell-to-cell mobile.	purine permease 10;(source:Araport11)
AT4G18290.1	protein_coding	potassium channel in Arabidopsis thaliana 2	Encodes KAT2, a member of the Shaker family potassium ion (K+) channel.  Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type. The Shaker family K+ ion channels include five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).	potassium channel KAT1-like protein;(source:Araport11)
AT4G18220.1	protein_coding	Drug/metabolite transporter superfamily protein		Drug/metabolite transporter superfamily protein;(source:Araport11)
AT4G18300.1	protein_coding	Trimeric LpxA-like enzyme		Trimeric LpxA-like enzyme;(source:Araport11)
AT4G18230.1	protein_coding			UDP-N-acetylglucosamine transferase subunit ALG14-like protein;(source:Araport11)
AT4G18310.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G18240.1	protein_coding	starch synthase 4	Encodes a starch synthase.  In Arabidopsis leaves, the catalytic C-terminal region of STARCH SYNTHASE 4 promotes starch granule initiation while its non-catalytic N-terminal region determines starch granules morphology.	starch synthase 4;(source:Araport11)
AT4G18320.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G13270.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT4G13280.1	protein_coding	terpenoid synthase 12	Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.	terpenoid synthase 12;(source:Araport11)
AT4G13360.1	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT4G13290.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 19	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 19;(source:Araport11)
AT4G13370.1	protein_coding	Plant protein of unknown function (DUF936)	Member of a novel, plant specific family of microtubule associated proteins.	serine/arginine repetitive matrix protein, putative (DUF936);(source:Araport11)
AT4G13300.1	protein_coding	terpenoid synthase 13	Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.	terpenoid synthase 13;(source:Araport11)
AT4G13380.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G13310.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 20	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 20;(source:Araport11)
AT4G13390.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT4G13320.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G13400.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G13330.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G13410.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	encodes a gene similar to cellulose synthase	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT4G13340.1	protein_coding	Leucine-rich repeat (LRR) family protein	Leucine rich extensin protein involved in cell wall biogenesis and organization. Interacts with several members of the RALF family of ligand peptides.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G13420.1	protein_coding	high affinity K+ transporter 5	Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels.	high affinity K+ transporter 5;(source:Araport11)
AT4G13350.1	protein_coding	NSP (nuclear shuttle protein)-interacting GTPase	Encodes a GTPase that interacts with nuclear shuttle proteins (NSPs) from a number of different plant viruses. The gene is widely expressed and NIG transcript levels do not rise in response to viral infection. This cytoplasmic protein does not directly interact with a viral movement protein (MP), but, it does promote the movement of NSP from the nucleus to the cytoplasm. Overexpression of NIG in Arabidopsis plants renders them more sensitive to geminivirus infection.	NSP (nuclear shuttle protein)-interacting GTPase;(source:Araport11)
AT4G13430.1	protein_coding	isopropyl malate isomerase large subunit 1	Encodes a methylthioalkylmalate isomerase involved in glucosinolate biosynthesis.	isopropyl malate isomerase large subunit 1;(source:Araport11)
AT4G13440.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT4G13450.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT5G46590.1	protein_coding	NAC domain containing protein 96		NAC domain containing protein 96;(source:Araport11)
AT5G46600.1	protein_coding	Aluminium activated malate transporter family protein		aluminum activated malate transporter family protein;(source:Araport11)
AT5G46610.1	protein_coding	Aluminium activated malate transporter family protein		aluminum activated malate transporter family protein;(source:Araport11)
AT5G46620.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G46560.1	protein_coding			Man1-Src1p-carboxy-terminal domain protein;(source:Araport11)
AT5G46570.1	protein_coding	BR-signaling kinase 2	Encodes BR-signaling kinase 2 (BSK2), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710).  Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized.	BR-signaling kinase 2;(source:Araport11)
AT5G46580.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT5G34840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.1e-07 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G10410.1	protein_coding	ENTH/ANTH/VHS superfamily protein		ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT5G10490.1	protein_coding	MSCS-like 2	A member of MscS-like gene family, structurally very similar to MSL3, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL2-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE.	MSCS-like 2;(source:Araport11)
AT5G10570.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a myo-inositol hexakisphosphate kinase.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G10400.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT5G10480.1	protein_coding	Protein-tyrosine phosphatase-like, PTPLA	Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early  mitosis and inhibited Arabidopsis seedling growth. Localized in  the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids).	Protein-tyrosine phosphatase-like, PTPLA;(source:Araport11)
AT5G10560.1	protein_coding	Glycosyl hydrolase family protein		Glycosyl hydrolase family protein;(source:Araport11)
AT5G10390.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT5G10470.1	protein_coding	kinesin like protein for actin based chloroplast movement 1	Kinesin that binds cyclin-dependent kinase CDKA;1 as homodimer or as heterodimer with KCA2. Demarcates the division site in plant cells.	kinesin like protein for actin based chloroplast movement 1;(source:Araport11)
AT5G10380.1	protein_coding	RING/U-box superfamily protein	Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. The mRNA is cell-to-cell mobile.	RING/U-box superfamily protein;(source:Araport11)
AT5G10460.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G10370.1	protein_coding	helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related		helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT5G10360.1	protein_coding	Ribosomal protein S6e	RPS6A and RPS6B are fully redundant and essential during gametogenesis.	Ribosomal protein S6e;(source:Araport11)
AT5G10630.1	protein_coding	Translation elongation factor EF1A/initiation factor IF2gamma family protein	Transcripts of this gene are alternatively spliced to encode either HBS1, a decoding factor translational GTPase, or SKI7, a component of the cytosolic RNA exosome.	Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT5G10550.1	protein_coding	global transcription factor group E2	This gene is predicted to encode a bromodomain-containing protein. A plant line expressing RNAi constructs targeted against GTE7 shows some resistance to agrobacterium-mediated root transformation.	global transcription factor group E2;(source:Araport11)
AT5G10620.1	protein_coding	methyltransferases		methyltransferase;(source:Araport11)
AT5G10540.1	protein_coding	Zincin-like metalloproteases family protein		Zincin-like metalloproteases family protein;(source:Araport11)
AT5G10450.1	protein_coding	G-box regulating factor 6	Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3&#955;). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1. Interacts with JAZ10.4 which lacks the Jas motif.  It is also phosphorylated by CRPK1 as part of the response to cold and translocates to the nucleus after phosphorylation.	G-box regulating factor 6;(source:Araport11)
AT5G10610.1	protein_coding	cytochrome P450, family 81, subfamily K, polypeptide 1	member of CYP81K The mRNA is cell-to-cell mobile.	cytochrome P450, family 81, subfamily K, polypeptide 1;(source:Araport11)
AT5G10530.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G10440.1	protein_coding	cyclin d4;2	Encodes a cyclin involved in cell proliferation during stomatal cell lineage development.	cyclin d4;(source:Araport11)
AT5G10600.1	protein_coding	cytochrome P450, family 81, subfamily K, polypeptide 2	member of CYP81K	cytochrome P450, family 81, subfamily K, polypeptide 2;(source:Araport11)
AT5G10520.1	protein_coding	ROP binding protein kinases 1		ROP binding protein kinases 1;(source:Araport11)
AT5G10350.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a nuclear-localized RNA recognition motif-containing protein that forms homodimers.  It interacts with telomere and non-telomere associated proteins. Null mutation does not result in changes in telomerase activity or telomere length.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G10430.1	protein_coding	arabinogalactan protein 4	Encodes arabinogalactan-protein (AGP4) that is expressed in female reproductive tissues. It is involved in promoting degeneration of the persistent synergid after fertilization. In mutant ovules, the persistent synergid does not degrade resulting in polytuby.	arabinogalactan protein 4;(source:Araport11)
AT5G10590.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G10510.1	protein_coding	AINTEGUMENTA-like 6	Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. It is also required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions. Intronic sequences are required for its expression in flowers.Acts redundantly with PLT5 and 7 in lateral root pattern formation.	AINTEGUMENTA-like 6;(source:Araport11)
AT5G10340.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G10420.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT5G10580.1	protein_coding	Protein of unknown function, DUF599		plant/protein (Protein of unknown function, DUF599);(source:Araport11)
AT5G10500.1	protein_coding	Kinase interacting (KIP1-like) family protein		Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT5G03370.1	protein_coding	acylphosphatase family		acylphosphatase family;(source:Araport11)
AT5G03300.1	protein_coding	adenosine kinase 2	Encodes adenosine kinase 2 (ADK2), a typical, constitutively expressed housekeeping enzyme. Shows a high sequence identity with ADK1. Involved in salvage synthesis of adenylates and methyl recycling. Enzyme activity is substantially inhibited in roots, siliques and dry seeds by an unknown compound. May contribute to cytokinin interconversion. The mRNA is cell-to-cell mobile.	adenosine kinase 2;(source:Araport11)
AT5G03380.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G03470.1	protein_coding	Protein phosphatase 2A regulatory B subunit family protein	Encodes B' regulatory subunit of PP2A (AtB'alpha), putative size of 57 kDa.Functions redundantly with the beta subunit do maintain sister chromatid cohesion during meiosis.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT5G03310.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G03390.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G03480.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G03320.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G03400.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G03570.1	protein_coding	iron regulated 2	Encodes FPN2, a tonoplast localized nickel transport protein. FPN2 is one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.	iron regulated 2;(source:Araport11)
AT5G03490.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a dihydroxybenzoic acid (DHBA) glycosyltransferase. The Col-0 enzyme is responsible for biosynthesis of 2,3-DHBA xyloside and 2,5-DHBA xyloside. The Col-0 enzyme is specific for UDP-xylose and the C24 enzyme uses both UDP-glucose and UDP-xylose. This difference in sugar donor specificity was shown to be largely due to a single amino acid change between the two isoforms.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G03330.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT5G03420.1	protein_coding	5'-AMP-activated protein kinase-related	Encodes a chloroplast-localized CBM48-containing protein that is involved in starch granule initiation. Mutants lacking PTST3 have fewer starch granules in leaf chloroplasts than the wild type. PTST3 interacts with PTST2, which is also involved in granule initiation.	5-AMP-activated protein kinase-like protein;(source:Araport11)
AT5G03510.1	protein_coding	C2H2-type zinc finger family protein		C2H2-type zinc finger family protein;(source:Araport11)
AT5G03350.1	protein_coding	Legume lectin family protein	Belongs to the group of early SA-activated genes. Involved in resistance to Pst Avr-Rpm1 as a component of the SA35 mediated defense processes associated to the ETI response. Involved in resistance to P.syringae pv. tomato Avr-Rpm1 in   Arabidopsis, as a component of the SA-mediated defense processes associated   with the effector-triggered immunity response.	Legume lectin family protein;(source:Araport11)
AT5G03520.1	protein_coding	RAB GTPase homolog 8C	GTPase that colocalizes with golgi and plasma membranes.	RAB GTPase homolog 8C;(source:Araport11)
AT5G03440.1	protein_coding			zinc finger protein;(source:Araport11)
AT5G03450.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G03540.1	protein_coding	exocyst subunit exo70 family protein A1	AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. It plays a central role in Casparian strip formation, generating a transient positional information that will be translated into a precisely localized cell wall modification.	exocyst subunit exo70 family protein A1;(source:Araport11)
AT5G03550.1	protein_coding			MATH domain/coiled-coil protein;(source:Araport11)
AT5G07810.1	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein		SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein;(source:Araport11)
AT5G08000.1	protein_coding	glucan endo-1,3-beta-glucosidase-like protein 3	Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.	glucan endo-1,3-beta-glucosidase-like protein 3;(source:Araport11)
AT5G08010.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G08020.1	protein_coding	RPA70-kDa subunit B	Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair. The mRNA is cell-to-cell mobile.	RPA70-kDa subunit B;(source:Araport11)
AT5G07990.1	protein_coding	Cytochrome P450 superfamily protein	Required for flavonoid 3' hydroxylase activity. Enzyme abundance relative to CHS determines Quercetin/Kaempferol metabolite ratio. The mRNA is cell-to-cell mobile.	Cytochrome P450 superfamily protein;(source:Araport11)
AT5G35920.1	protein_coding	cytochrome P450, family 79, subfamily A, polypeptide 4 pseudogene	a cytochrome P450 pseudogene	cytochrome P450, family 79, subfamily A, polypeptide 4 pseudogene;(source:Araport11)
AT5G35930.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT5G11840.1	protein_coding	Protein of unknown function (DUF1230)		YCF36, putative (DUF1230);(source:Araport11)
AT5G11930.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2.	Thioredoxin superfamily protein;(source:Araport11)
AT5G11850.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G11940.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT5G11860.1	protein_coding	SCP1-like small phosphatase 5	Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).	SCP1-like small phosphatase 5;(source:Araport11)
AT5G12030.1	protein_coding	heat shock protein 17.6A	Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.	heat shock protein 17.6A;(source:Araport11)
AT5G11950.1	protein_coding	Putative lysine decarboxylase family protein	Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.	Putative lysine decarboxylase family protein;(source:Araport11)
AT5G11870.1	protein_coding	Alkaline phytoceramidase (aPHC)		Alkaline phytoceramidase (aPHC);(source:Araport11)
AT5G12040.1	protein_coding	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein		Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein;(source:Araport11)
AT5G11960.1	protein_coding	Protein of unknown function (DUF803)		magnesium transporter, putative (DUF803);(source:Araport11)
AT5G12050.1	protein_coding			rho GTPase-activating protein;(source:Araport11)
AT5G11880.1	protein_coding	Pyridoxal-dependent decarboxylase family protein	Meso-diaminopimelate decarboxylase which  catalyzes the decarboxylation of mesodiaminopimelate, the final reaction in the diaminopimelate L-lysine biosynthetic pathway.	Pyridoxal-dependent decarboxylase family protein;(source:Araport11)
AT5G11970.1	protein_coding	Protein of unknown function (DUF3511)		ABC family ABC transporter, putative (DUF3511);(source:Araport11)
AT5G11890.1	protein_coding			harpin-induced protein;(source:Araport11)
AT5G11980.1	protein_coding	conserved oligomeric Golgi complex component-related / COG complex component-related	COG8 is a component of a putative  conserved oligomeric Golgi (COG) complex that is thought to be involved in tethering of retrograde intra Golgi vesicles. It is required for proper deposition of cell wall materials in pollen tube growth. In mutant pollen,golgi appear abnormal.When homozygotes can be produced (by complementing the defect in pollen), the plants are embryo lethal suggesting an essential function. COG8 interacts with several other putative COG components.	conserved oligomeric Golgi complex component-related / COG complex component-like protein;(source:Araport11)
AT5G11900.1	protein_coding	Translation initiation factor SUI1 family protein		Translation initiation factor SUI1 family protein;(source:Araport11)
AT5G11990.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT5G11910.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G12000.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT5G11920.1	protein_coding	6-&1-fructan exohydrolase	Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.	6-%261-fructan exohydrolase;(source:Araport11)
AT5G12010.1	protein_coding			nuclease;(source:Araport11)
AT5G12020.1	protein_coding	17.6 kDa class II heat shock protein		17.6 kDa class II heat shock protein;(source:Araport11)
AT5G15630.1	protein_coding	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family	Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family;(source:Araport11)
AT5G15720.1	protein_coding	GDSL-motif lipase 7	Contains lipase signature motif and GDSL domain.	GDSL-motif lipase 7;(source:Araport11)
AT5G15640.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G15730.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G15650.1	protein_coding	reversibly glycosylated polypeptide 2	RGP2 is a UDP-arabinose mutase that catalyzes the interconversion between the pyranose and furanose forms of UDP-L-arabinose. It appears to be required for proper cell wall formation. rgp1(at3g02230)/rgp2 double mutants have a male gametophyte lethal phenotype. RGP2 fusion proteins can be found in the cytosol and peripherally associated with the Golgi apparatus. RGP2 was originally identified as Reversibly Glycosylated Polypeptide-2.  Constitutive expression in tobacco impairs plant development and virus spread.	reversibly glycosylated polypeptide 2;(source:Araport11)
AT5G15820.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G15740.1	protein_coding	O-fucosyltransferase family protein	RRT1 is a member of a novel glycosyltransferase famly in plants. It functions as a rhamnosyltransferase, elongating the RG-1 backbone. It functions during seed coat mucilage development.	O-fucosyltransferase family protein;(source:Araport11)
AT5G15660.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G15830.1	protein_coding	basic leucine-zipper 3		basic leucine-zipper 3;(source:Araport11)
AT5G15750.1	protein_coding	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein		Alpha-L RNA-binding motif/Ribosomal protein S4 family protein;(source:Araport11)
AT5G15670.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G15840.1	protein_coding	B-box type zinc finger protein with CCT domain	Encodes a protein showing similarities to zinc finger transcription factors, involved in regulation of flowering under long days. Acts upstream of FT and SOC1.	B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT5G15760.1	protein_coding	Ribosomal protein PSRP-3/Ycf65		Ribosomal protein PSRP-3/Ycf65;(source:Araport11)
AT5G15680.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G15850.1	protein_coding	CONSTANS-like 1	Homologous to the flowering-time gene CONSTANS.	CONSTANS-like 1;(source:Araport11)
AT5G15770.1	protein_coding	glucose-6-phosphate acetyltransferase 1	Encodes a putative glucose-6-phosphate acetyltransferase that is likely involved in UDP-N-acetylglucosamine biosynthesis. A GFP:GNA1 fusion protein localizes to the endoplasmic reticulum.	glucose-6-phosphate acetyltransferase 1;(source:Araport11)
AT5G15690.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT5G15860.1	protein_coding	prenylcysteine methylesterase	Encodes a protein with prenylcysteine methylesterase activity.	prenylcysteine methylesterase;(source:Araport11)
AT5G15780.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G15700.1	protein_coding	DNA/RNA polymerases superfamily protein	Nucleus  encoded plastid RNA polymerase. Localized in mitochondria and chloroplast.	DNA/RNA polymerases superfamily protein;(source:Araport11)
AT5G15790.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G15710.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G15800.1	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a MADS box transcription factor involved flower and ovule development.  Functionally redundant with SEP2 and SEP3.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G15810.1	protein_coding	N2,N2-dimethylguanosine tRNA methyltransferase		tRNA (guanine(26)-N(2))-dimethyltransferase;(source:Araport11)
AT5G27880.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G27890.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G27900.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.1e-26 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT5G27850.1	protein_coding	Ribosomal protein L18e/L15 superfamily protein		Ribosomal protein L18e/L15 superfamily protein;(source:Araport11)
AT5G27860.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G27870.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT5G03070.1	protein_coding	importin alpha isoform 9	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	importin alpha isoform 9;(source:Araport11)
AT5G03080.1	protein_coding	Phosphatidic acid phosphatase (PAP2) family protein	Encodes a phosphatidic acid phosphatase that can be detected in chloroplast membrane fractions. This gene, LPPgamma appears to be more important for diacylglycerol formation than LPPepsilon1 and LPPepsilon2 in the plastids. Heterozygous lppgamma mutants produce pollen that have defects in pollen tube germination and no homozygous mutants have been recovered. The mRNA is cell-to-cell mobile.	Phosphatidic acid phosphatase (PAP2) family protein;(source:Araport11)
AT5G03170.1	protein_coding	FASCICLIN-like arabinogalactan-protein 11	Encodes FLA11, a member of fasciclin-like arabinogalactan proteins (FLAs) containing a cell adhesion fasciclin (FAS) domain. Mutations result in altered stem biomechanics with reduced tensile strength and reduced tensile modulus of elasticity, as well as altered cell wall architecture and composition, with increased cellulose microfibril angle, reduced arabinose, galactose and cellulose content.	FASCICLIN-like arabinogalactan-protein 11;(source:Araport11)
AT5G03090.1	protein_coding			Mto 1 responding down protein;(source:Araport11)
AT5G03180.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G03100.1	protein_coding	F-box/RNI-like superfamily protein	F-box/RNI-like superfamily protein, expressed in the peroxisome.	F-box/RNI-like superfamily protein;(source:Araport11)
AT5G03270.1	protein_coding	lysine decarboxylase family protein		lysine decarboxylase family protein;(source:Araport11)
AT5G03190.1	protein_coding	conserved peptide upstream open reading frame 47		peptide upstream protein;(source:Araport11)
AT5G03110.1	protein_coding			protamine P1 family protein;(source:Araport11)
AT5G03030.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G03200.1	protein_coding	RING/U-box superfamily protein	Paralog of LOG2 (At3g09770), a ubiquitin ligase that regulates amino acid export.	RING/U-box superfamily protein;(source:Araport11)
AT5G03120.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G03040.1	protein_coding	IQ-domain 2	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 2;(source:Araport11)
AT5G03210.1	protein_coding		Encodes a small polypeptide contributing to resistance to potyvirus.	E3 ubiquitin-protein ligase;(source:Araport11)
AT5G03130.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G03050.1	protein_coding			knotted 1-binding protein;(source:Araport11)
AT5G03220.1	protein_coding	Mediator complex, subunit Med7	Encodes together with its paralog MED7B a subunit of the middle module of the transcriptional co-regulator Mediator complex. Regulates genes required for normal development of etiolated seedlings.	Mediator complex, subunit Med7;(source:Araport11)
AT5G03140.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G03060.1	protein_coding			striatin-like protein;(source:Araport11)
AT5G03230.1	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT5G03150.1	protein_coding	C2H2-like zinc finger protein	JKD is a nuclear-localized putative transcription factor of the BIRDS/IDD C2H2 zinc finger family. JKD and its homologue BIB, restrict SHR movement to a single layer, the endodermis, and delimit tissue boundaries in the root meristem through a process that involves nuclear retention through protein complex formation. JKD mutation leads to periclinal divisions in the cortex, increased cell numbers in the circumference of the cortical and epidermal layers, a disrupted QC marker expression pattern, and disorganized QC and columella cells. This effect is enhanced in jkd bib double mutants where tissue boundaries cannot be maintained due to excessive SHR movement. JKD and BIB restrict CYCIND6 expression to cortex and endodermis stem cells to prevent formative divisions in the ground tissue.  JKD physically interacts with cell fate determinants SCR and SHR in a cell type specific manner. Native FRET-FLIM analysis showed higher JKD-SCR complex in the endodermis and predominant JKD-SHR in the QC and cortex/endodermis stem cells. In addition, JKD, SCR and SHR form a ternary complex whose conformation is cell type dependent, conformational changes of this complex differentially regulate SCR and WOX5 expression to specify endodermal cell fate and QC function respectively. Its mRNA is cell-to-cell mobile.	C2H2-like zinc finger protein;(source:Araport11)
AT5G03240.1	protein_coding	polyubiquitin 3	encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.	polyubiquitin 3;(source:Araport11)
AT5G03160.1	protein_coding	homolog of mamallian P58IPK	J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.	DnaJ P58IPK-like protein;(source:Araport11)
AT5G03250.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G03260.1	protein_coding	laccase 11	LAC11 is a putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	laccase 11;(source:Araport11)
AT5G27560.1	protein_coding	Domain of unknown function (DUF1995)		DUF1995 domain protein, putative (DUF1995);(source:Araport11)
AT5G27570.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	No expression of gene detected yet.	cell division cycle 20.2, cofactor of APC complex-like protein;(source:Araport11)
AT5G27580.1	protein_coding	AGAMOUS-like 89		AGAMOUS-like 89;(source:Araport11)
AT5G27590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03950.1);(source:TAIR10)
AT5G27600.1	protein_coding	long-chain acyl-CoA synthetase 7	Encode peroxisomal long-chain acyl-CoA synthetase. Activates fatty acids for further metabolism. Interacts with PEX5.	long-chain acyl-CoA synthetase 7;(source:Araport11)
AT5G27610.1	protein_coding	DIRP ;Myb-like DNA-binding domain		protein ALWAYS EARLY 1;(source:Araport11)
AT5G27620.1	protein_coding	cyclin H;1	core cell cycle genes The mRNA is cell-to-cell mobile.	cyclin H;(source:Araport11)
AT5G27630.1	protein_coding	acyl-CoA binding protein 5	Acyl-CoA binding protein with high affinity for   oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.	acyl-CoA binding protein 5;(source:Araport11)
AT5G28030.1	protein_coding	L-cysteine desulfhydrase 1	Encodes a novel l-cysteine desulfhydrase involved in cysteine homeostasis that catalyzes the desulfuration of Cys, instead of the synthesis of Cys like the OASTL, to produce sulfide plus ammonia and pyruvate.	L-cysteine desulfhydrase 1;(source:Araport11)
AT5G27950.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G28040.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator	Member of the GeBP/GPL family of leucine zipper transcription factors. VPF4 interacts with the F-box proteins from A.tumefaciens VirF and VBF. Over expression results in decreased tumor formation upon Agrobacterium infection. Mutants show changes in the level of expression of defense response genes.	DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT5G27960.1	protein_coding	AGAMOUS-like 90		AGAMOUS-like 90;(source:Araport11)
AT5G28050.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT5G27970.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G28060.1	protein_coding	Ribosomal protein S24e family protein		Ribosomal protein S24e family protein;(source:Araport11)
AT5G27980.1	protein_coding	Seed maturation protein		Seed maturation protein;(source:Araport11)
AT5G27990.1	protein_coding	Pre-rRNA-processing protein TSR2, conserved region		Pre-rRNA-processing protein TSR2, conserved region;(source:Araport11)
AT5G28000.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT5G28010.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT5G28020.1	protein_coding	cysteine synthase D2	Encodes cysteine synthase CysD2.	cysteine synthase D2;(source:Araport11)
AT5G32620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G15320.1);(source:TAIR10)
AT5G32630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, various predicted helicase proteins, Arabidopsis thaliana and others;(source:TAIR10)
AT5G32610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G33715.1);(source:TAIR10)
AT5G60240.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G60160.1	protein_coding	Zn-dependent exopeptidases superfamily protein	Vacuolar aspartyl aminopeptidase which also functions as a molecular chaperone.	Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT5G60250.1	protein_coding	zinc finger (C3HC4-type RING finger) family protein		zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT5G60170.1	protein_coding	RNA binding (RRM/RBD/RNP motifs) family protein		RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G60260.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G60180.1	protein_coding	pumilio 19	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 19;(source:Araport11)
AT5G60270.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G60190.1	protein_coding	Cysteine proteinases superfamily protein	Encodes a protein that can cleave residues from the C-terminus of RUB1 to prepare it for conjugation to target proteins.	Cysteine proteinases superfamily protein;(source:Araport11)
AT5G60280.1	protein_coding	Concanavalin A-like lectin protein kinase family protein	Plasma membrane localized receptor kinase. Binds NAD+ and induces expression of disease resistance genes.	Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G60200.1	protein_coding	TARGET OF MONOPTEROS 6	Encodes a Dof-type transcription factor. PEAR protein involved in the formation of a short-range concentration gradient that peaks at protophloem sieve elements, and activates gene expression that promotes radial growth. Locally promotes transcription of inhibitory HD-ZIP III genes, and thereby establishes a negative-feedback loop that forms a robust boundary that demarks the zone of cell division.	TARGET OF MONOPTEROS 6;(source:Araport11)
AT5G60290.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G60210.1	protein_coding	ROP interactive partner 5	Encodes RIP5 (ROP interactive partner 5), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants).	ROP interactive partner 5;(source:Araport11)
AT5G60300.1	protein_coding	Concanavalin A-like lectin protein kinase family protein	Encodes a legume-type lectin receptor kinase that is structurally distinct from the mammalian extracellular ATP receptors and acts as an extracellular ATP receptor in Arabidopsis. Extracellular ATP acts as a damage-associated molecular pattern in plants, and its signaling through P2K1 is important for mounting an effective defense response against various pathogenic microorganisms. It also plays a role in cell wall-plasma membrane adhesion.	Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G60220.1	protein_coding	tetraspanin4	Member of TETRASPANIN family	tetraspanin4;(source:Araport11)
AT5G60310.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G60230.1	protein_coding	splicing endonuclease 2	putative subunit of tRNA splicing endonuclease	splicing endonuclease 2;(source:Araport11)
AT5G06570.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G06580.1	protein_coding	FAD-linked oxidases family protein	Encodes a protein with glycolate dehydrogenase activity, which was shown to complement various subunits of the E. coli glycolate oxidase complex. It has not been ruled out that the enzyme might be involved in other catalytic activities in vivo.	FAD-linked oxidases family protein;(source:Araport11)
AT5G06670.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G06590.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G06510.1	protein_coding	nuclear factor Y, subunit A10		nuclear factor Y, subunit A10;(source:Araport11)
AT5G06600.1	protein_coding	ubiquitin-specific protease 12	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 12;(source:Araport11)
AT5G06520.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G06610.1	protein_coding	Protein of unknown function (DUF620)	DUF620 domain protein. In xylem cells BRD1 is expressed in the secondary wall pit boundaries. BRD1 interacts with and appears to be necessary to recruit WALLIN to the plasma membrane.	lipase (DUF620);(source:Araport11)
AT5G06530.1	protein_coding	ABC-2 type transporter family protein	Encodes ABCG22, an ABC transporter gene. Mutation results in increased water transpiration and drought susceptibility.	ABC-2 type transporter family protein;(source:Araport11)
AT5G06620.1	protein_coding	SET domain protein 38		SET domain protein 38;(source:Araport11)
AT5G06540.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G06630.1	protein_coding	proline-rich extensin-like family protein		proline-rich extensin-like family protein;(source:Araport11)
AT5G06550.1	protein_coding		Encodes a HR demethylase that acts as a positive regulator of seed germination in the PHYB-PIL5-SOM pathway.	transferring glycosyl group transferase;(source:Araport11)
AT5G06560.1	protein_coding	Protein of unknown function, DUF593		myosin-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT5G06640.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT5G06650.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G06660.1	protein_coding	Protein of unknown function DUF106, transmembrane		transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane);(source:Araport11)
AT5G11430.1	protein_coding	SPOC domain / Transcription elongation factor S-II protein		SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT5G11510.1	protein_coding	myb domain protein 3r-4	Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4.  Functions in powdery mildew induced host endoreduplication at the site of infection.	myb domain protein 3r-4;(source:Araport11)
AT5G11440.1	protein_coding	CTC-interacting domain 5	Interacts with PAB (poly A binding protein) in yeast two hybrid experiments. Contains PAM2 motif, a PABC interacting domain.	CTC-interacting domain 5;(source:Araport11)
AT5G11520.1	protein_coding	aspartate aminotransferase 3	Encodes the chloroplastic isozyme of aspartate aminotransferase.  Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.	aspartate aminotransferase 3;(source:Araport11)
AT5G11450.1	protein_coding	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein		PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein);(source:Araport11)
AT5G11530.1	protein_coding	embryonic flower 1 (EMF1)	Involved in regulating reproductive development	embryonic flower 1 (EMF1);(source:Araport11)
AT5G11460.1	protein_coding	Protein of unknown function (DUF581)	FCS like zinc finger 10 is induced during energy starvation through SnRK1 signaling. Mutants accumulate more SnRK1alpha1 which results in the inhibition of seedling growth under favorable growth conditions. Increased SnRK1 activity in the mutant also results in the downregulation of TOR signaling (DOI:10.1111/tpj.13854).	hypothetical protein (DUF581);(source:Araport11)
AT5G11540.1	protein_coding	D-arabinono-1,4-lactone oxidase family protein	Encodes a homolog of rat L-gulono-1,4-lactone (L-GulL) oxidase that is involved in the biosynthesis of L-ascorbic acid.	D-arabinono-1,4-lactone oxidase family protein;(source:Araport11)
AT5G11470.1	protein_coding	bromo-adjacent homology (BAH) domain-containing protein	SG1 is a Bromo-Adjacent Homology (BAH) domain containing protein involved in CHG methylation within genebodies. Loss of function results in pleiotrophic developmental effects that increase after 4 generations.	bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT5G11550.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G11560.1	protein_coding	catalytics		catalytics;(source:Araport11)
AT5G11480.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G11490.1	protein_coding	adaptin family protein	Encodes a component of the AP4 complex and is involved in vacuolar sorting of storage proteins.	adaptin family protein;(source:Araport11)
AT5G11570.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G11500.1	protein_coding			coiled-coil protein;(source:Araport11)
AT5G11580.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT5G65070.1	protein_coding	K-box region and MADS-box transcription factor family protein	Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G65080.1	protein_coding	K-box region and MADS-box transcription factor family protein 	Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported.	K-box region/MADS-box transcription factor family protein;(source:Araport11)
AT5G27080.1	protein_coding	Transducin family protein / WD-40 repeat family protein	No expression of gene detected yet.	cell division cycle 20.2, cofactor of APC complex-like protein;(source:Araport11)
AT5G27090.1	protein_coding	AGAMOUS-like 54		AGAMOUS-like 54;(source:Araport11)
AT5G27050.1	protein_coding	AGAMOUS-like 101		AGAMOUS-like 101;(source:Araport11)
AT5G27060.1	protein_coding	receptor like protein 53		receptor like protein 53;(source:Araport11)
AT5G27070.1	protein_coding	AGAMOUS-like 53		AGAMOUS-like 53;(source:Araport11)
AT5G38110.1	protein_coding	anti- silencing function 1b	This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation. Its expression is regulated during cell cycle progression through E2F transcription factors.	anti- silencing function 1b;(source:Araport11)
AT5G38030.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT5G38040.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G38050.1	protein_coding	RNA polymerase II transcription elongation factor		RNA polymerase II transcription elongation factor;(source:Araport11)
AT5G38060.1	protein_coding			carboxypeptidase;(source:Araport11)
AT5G38070.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G38080.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G38090.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G38100.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G38020.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus). SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G03590.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G03600.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT5G03680.1	protein_coding	Duplicated homeodomain-like superfamily protein	Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT5G03610.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G03690.1	protein_coding	Aldolase superfamily protein		Aldolase superfamily protein;(source:Araport11)
AT5G03700.1	protein_coding	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain		D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein;(source:Araport11)
AT5G03620.1	protein_coding	Subtilisin-like serine endopeptidase family protein		Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT5G03630.1	protein_coding	Pyridine nucleotide-disulphide oxidoreductase family protein		Pyridine nucleotide-disulfide oxidoreductase family protein;(source:Araport11)
AT5G03710.1	protein_coding			replication factor C large subunit;(source:Araport11)
AT5G03640.1	protein_coding	Protein kinase superfamily protein	AGCVIII kinase involved in the pulse-induced first positive phototropism.	Protein kinase superfamily protein;(source:Araport11)
AT5G03720.1	protein_coding	heat shock transcription factor A3	Member of Heat Stress Transcription Factor (Hsf) family. Expression is regulated by DREB2A and in turn HSFA3 regulates the expression of hsps Hsp18.1-CI and Hsp26.5-MII35S. Involved in  establishing thermotolerence.	heat shock transcription factor A3;(source:Araport11)
AT5G03650.1	protein_coding	starch branching enzyme 2.2	Encodes starch branching enzyme (E.C.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout the plant and highest in seedlings and cauline leaves.	starch branching enzyme 2.2;(source:Araport11)
AT5G03730.1	protein_coding	Protein kinase superfamily protein	Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed.	Protein kinase superfamily protein;(source:Araport11)
AT5G03660.1	protein_coding	Family of unknown function (DUF662) 		transcriptional activator (DUF662);(source:Araport11)
AT5G03670.1	protein_coding			histone-lysine N-methyltransferase SETD1B-like protein;(source:Araport11)
AT5G09610.1	protein_coding	pumilio 21	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 21;(source:Araport11)
AT5G09620.1	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT5G09540.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G09710.1	pseudogene	Magnesium transporter CorA-like family protein		Magnesium transporter CorA-like family protein;(source:Araport11)
AT5G09630.1	protein_coding	LisH/CRA/RING-U-box domains-containing protein		LisH/CRA/RING-U-box domains-containing protein;(source:Araport11)
AT5G09550.1	protein_coding	GDP dissociation inhibitor family protein / Rab GTPase activator family protein		GDP dissociation inhibitor family protein / Rab GTPase activator family protein;(source:Araport11)
AT5G09720.1	protein_coding	Magnesium transporter CorA-like family protein		Magnesium transporter CorA-like family protein;(source:Araport11)
AT5G09640.1	protein_coding	serine carboxypeptidase-like 19	encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase.	serine carboxypeptidase-like 19;(source:Araport11)
AT5G09730.1	protein_coding	beta-xylosidase 3	Encodes a protein similar to a beta-xylosidase located in the extracellular matrix. It is able to degrade terminal arabinosyl residues and likely participates in the in-vivo hydrolysis of arabinan. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	beta-xylosidase 3;(source:Araport11)
AT5G09560.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT5G09650.1	protein_coding	pyrophosphorylase 6	Encodes a protein with inorganic pyrophosphatase activity.	pyrophosphorylase 6;(source:Araport11)
AT5G09570.1	protein_coding	Cox19-like CHCH family protein		Cox19-like CHCH family protein;(source:Araport11)
AT5G09740.1	protein_coding	histone acetyltransferase of the MYST family 2	Encodes an enzyme with histone acetyltransferase activity. HAM2 primarily acetylate histone H4, but also  display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4  reduces radioactive acetylation by either HAM2.	histone acetyltransferase of the MYST family 2;(source:Araport11)
AT5G09660.1	protein_coding	peroxisomal NAD-malate dehydrogenase 2	encodes a microbody NAD-dependent malate dehydrogenase  encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.	peroxisomal NAD-malate dehydrogenase 2;(source:Araport11)
AT5G09580.1	protein_coding			heat shock protein;(source:Araport11)
AT5G09750.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a bHLH transcription factor that is involved in transmitting tract and stigma development.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G09670.1	protein_coding	loricrin-related		loricrin-like protein;(source:Araport11)
AT5G09590.1	protein_coding	mitochondrial HSO70 2	heat shock protein 70 (Hsc70-5); nuclear	mitochondrial HSO70 2;(source:Araport11)
AT5G09760.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT5G09680.1	protein_coding	reduced lateral root formation	Encodes RLF (Reduced Lateral root Formation).  Involved in lateral root formation.  Contains a cytochrome b5-like heme/steroid binding domain.  Localized in the cytosol.	reduced lateral root formation;(source:Araport11)
AT5G09600.1	protein_coding	succinate dehydrogenase 3-1	Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.	succinate dehydrogenase 3-1;(source:Araport11)
AT5G09770.1	protein_coding	Ribosomal protein L17 family protein		Ribosomal protein L17 family protein;(source:Araport11)
AT5G09690.1	protein_coding	magnesium transporter 7	Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT5G09780.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT5G09700.1	protein_coding	Glycosyl hydrolase family protein	pseudogene of glycosyl hydrolase family 3 protein	Glycosyl hydrolase family protein;(source:Araport11)
AT5G09790.1	protein_coding	ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5	Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain.  ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against  this gene has reduced agrobacterium-mediated tumor formation.	TRITHORAX-RELATED PROTEIN 5;(source:Araport11)
AT5G09800.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G18770.1	protein_coding	F-box/FBD-like domains containing protein		F-box/FBD-like domains containing protein;(source:Araport11)
AT5G18850.1	protein_coding			Low-density receptor-like protein;(source:Araport11)
AT5G18780.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G18860.1	protein_coding	inosine-uridine preferring nucleoside hydrolase family protein	Encodes a purine nucleoside hydrolase active in the apoplast. It might play a role in salvaging extracellular ATP. NSH3 transcript levels rise in response to jasmonic acid and wounding.	inosine-uridine preferring nucleoside hydrolase family protein;(source:Araport11)
AT5G18950.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G18790.1	protein_coding	Ribosomal protein L33 family protein		Ribosomal protein L33 family protein;(source:Araport11)
AT5G18870.1	protein_coding	Inosine-uridine preferring nucleoside hydrolase family protein	Similar to N terminal region of NSH1 nucleoside hydrolase.	Inosine-uridine preferring nucleoside hydrolase family protein;(source:Araport11)
AT5G18960.1	protein_coding	FAR1-related sequence 12		FAR1-related sequence 12;(source:Araport11)
AT5G18800.1	protein_coding	Cox19-like CHCH family protein		Cox19-like CHCH family protein;(source:Araport11)
AT5G18880.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT5G18810.1	protein_coding	SC35-like splicing factor 28	encodes an SC35-like splicing factor of 28 kD localized to the nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SC35-like splicing factor 28;(source:Araport11)
AT5G18890.1	protein_coding	Inosine-uridine preferring nucleoside hydrolase family protein		Inosine-uridine preferring nucleoside hydrolase family protein;(source:Araport11)
AT5G18820.1	protein_coding	TCP-1/cpn60 chaperonin family protein	Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins.  Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).	TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT5G18900.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G18830.1	protein_coding	squamosa promoter binding protein-like 7	Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter  of the copper responsive miRNAs miR398b and miR389c.	squamosa promoter binding protein-like 7;(source:Araport11)
AT5G18910.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G18840.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G18920.1	protein_coding	Cox19-like CHCH family protein		Cox19-like CHCH family protein;(source:Araport11)
AT5G18930.1	protein_coding	Adenosylmethionine decarboxylase family protein		Adenosylmethionine decarboxylase family protein;(source:Araport11)
AT5G18940.1	protein_coding	Mo25 family protein		Mo25 family protein;(source:Araport11)
AT5G52220.1	protein_coding			chromosome transmission fidelity-like protein;(source:Araport11)
AT5G52230.1	protein_coding	methyl-CPG-binding domain protein 13	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain protein 13;(source:Araport11)
AT5G52150.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G52240.1	protein_coding	membrane steroid binding protein 1	Encodes a protein with similarity to  progesterone-binding proteins in animals. Has been shown to bind steroids in vitro. Expressed in aerial portions of the plant excluding mature flowers and siliques. Antisense experiments suggest a role in inhibition of hypocotyl cell elongation. Expression is suppressed light grown seedlings transferred to the dark. The mRNA is cell-to-cell mobile.	membrane steroid binding protein 1;(source:Araport11)
AT5G52160.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G52250.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response. Functions as a repressor of UV-B signaling.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G52170.1	protein_coding	homeodomain GLABROUS 7	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	homeodomain GLABROUS 7;(source:Araport11)
AT5G52260.1	protein_coding	myb domain protein 19	Member of the R2R3 factor gene family.	myb domain protein 19;(source:Araport11)
AT5G52180.1	protein_coding			transmembrane protein 161AB protein;(source:Araport11)
AT5G52270.1	protein_coding	SNARE-like superfamily protein		SNARE-like superfamily protein;(source:Araport11)
AT5G52190.1	protein_coding	Sugar isomerase (SIS) family protein		Sugar isomerase (SIS) family protein;(source:Araport11)
AT5G52280.1	protein_coding	Myosin heavy chain-related protein		Myosin heavy chain-related protein;(source:Araport11)
AT5G52200.1	protein_coding	phosphoprotein phosphatase inhibitors	Encodes an inhibitor of protein phosphatase one (PP1).	phosphoprotein phosphatase inhibitor;(source:Araport11)
AT5G52210.1	protein_coding	GTP-binding protein 1	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	GTP-binding protein 1;(source:Araport11)
AT5G25800.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G25810.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G25820.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT5G25830.1	protein_coding	GATA transcription factor 12	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 12;(source:Araport11)
AT5G25840.1	protein_coding	Protein of unknown function (DUF1677)		DUF1677 family protein (DUF1677);(source:Araport11)
AT5G25760.1	protein_coding	peroxin4	mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes.	peroxin4;(source:Araport11)
AT5G25770.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G25850.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G25860.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G25780.1	protein_coding	eukaryotic translation initiation factor 3B-2	member of eIF3b - eukaryotic initiation factor 3b	eukaryotic translation initiation factor 3B-2;(source:Araport11)
AT5G25790.1	protein_coding	Tesmin/TSO1-like CXC domain-containing protein		Tesmin/TSO1-like CXC domain-containing protein;(source:Araport11)
AT5G10310.1	protein_coding			EPIDERMAL PATTERNING FACTOR-like protein;(source:Araport11)
AT5G10320.1	protein_coding			ATP synthase subunit B;(source:Araport11)
AT5G10240.1	protein_coding	asparagine synthetase 3	Encodes asparagine synthetase (ASN3).	asparagine synthetase 3;(source:Araport11)
AT5G10330.1	protein_coding	histidinol phosphate aminotransferase 1	Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.	histidinol phosphate aminotransferase 1;(source:Araport11)
AT5G10250.1	protein_coding	Phototropic-responsive NPH3 family protein	Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G10260.1	protein_coding	RAB GTPase homolog H1E		RAB GTPase homolog H1E;(source:Araport11)
AT5G10270.1	protein_coding	cyclin-dependent kinase C;1	Encodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes.  Also regulates plant growth and development.	cyclin-dependent kinase C;(source:Araport11)
AT5G10280.1	protein_coding	myb domain protein 92	Encodes a putative transcription factor (MYB92).	myb domain protein 92;(source:Araport11)
AT5G10290.1	protein_coding	leucine-rich repeat transmembrane protein kinase family protein		leucine-rich repeat transmembrane protein kinase family protein;(source:Araport11)
AT5G10300.1	protein_coding	methyl esterase 5	Encodes a protein with R-selective hydroxynitrile lyase activity. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	methyl esterase 5;(source:Araport11)
AT5G25280.1	protein_coding	serine-rich protein-related		serine-rich protein-like protein;(source:Araport11)
AT5G25360.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G25290.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT5G25370.1	protein_coding	phospholipase D alpha 3	member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.	phospholipase D alpha 3;(source:Araport11)
AT5G25300.1	protein_coding			F-box protein;(source:Araport11)
AT5G25380.1	protein_coding	cyclin a2;1	core cell cycle genes	cyclin a2;(source:Araport11)
AT5G25310.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT5G25390.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G25320.1	protein_coding	ACT-like superfamily protein		ACT-like superfamily protein;(source:Araport11)
AT5G25400.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT5G25330.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G25410.1	protein_coding	Protein of Unknown Function (DUF239)		transmembrane protein, putative (DUF239);(source:Araport11)
AT5G25340.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G25420.1	protein_coding	Xanthine/uracil/vitamin C permease		Xanthine/uracil/vitamin C permease;(source:Araport11)
AT5G25350.1	protein_coding	EIN3-binding F box protein 2	Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway.	EIN3-binding F box protein 2;(source:Araport11)
AT5G14310.1	protein_coding	carboxyesterase 16		carboxyesterase 16;(source:Araport11)
AT5G14230.1	protein_coding			ankyrin;(source:Araport11)
AT5G14320.1	protein_coding	Ribosomal protein S13/S18 family		Ribosomal protein S13/S18 family;(source:Araport11)
AT5G14240.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT5G14410.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G14330.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G14250.1	protein_coding	Proteasome component (PCI) domain protein	Encodes subunit 3 of the COP9 signalosome.	Proteasome component (PCI) domain protein;(source:Araport11)
AT5G14420.1	protein_coding	RING domain ligase2	Encodes RGLG2 (RING domain ligase 2), a RING domain ubiquitin E3 ligase that negatively regulates the drought stress response by mediating ERF53 transcriptional activity.	RING domain ligase2;(source:Araport11)
AT5G14340.1	protein_coding	myb domain protein 40	Member of the R2R3 factor gene family.	myb domain protein 40;(source:Araport11)
AT5G14430.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G14260.1	protein_coding	Rubisco methyltransferase family protein		Rubisco methyltransferase family protein;(source:Araport11)
AT5G14350.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G14270.1	protein_coding	bromodomain and extraterminal domain protein 9	Bromodomain protein that functions as a negative regulator of sugar and ABA signaling.	bromodomain and extraterminal domain protein 9;(source:Araport11)
AT5G14440.1	protein_coding	Surfeit locus protein 2 (SURF2)		Surfeit locus protein 2 (SURF2);(source:Araport11)
AT5G14360.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G14280.1	protein_coding	DNA-binding storekeeper protein-related		DNA-binding storekeeper-like protein;(source:Araport11)
AT5G14450.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G14370.1	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT5G14290.1	protein_coding	Mitochondrial ribosomal protein L37		Mitochondrial ribosomal protein L37;(source:Araport11)
AT5G14460.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT5G14380.1	protein_coding	arabinogalactan protein 6	Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP6 function results in decreased fertility due to defects in pollen tube growth.	arabinogalactan protein 6;(source:Araport11)
AT5G14300.1	protein_coding	prohibitin 5		prohibitin 5;(source:Araport11)
AT5G14470.1	protein_coding	GHMP kinase family protein		GHMP kinase family protein;(source:Araport11)
AT5G14390.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G14400.1	protein_coding	cytochrome P450, family 724, subfamily A, polypeptide 1	Encodes a brassinosteroid C-22 hydroxylase.	cytochrome P450, family 724, subfamily A, polypeptide 1;(source:Araport11)
AT5G32440.1	protein_coding	Ubiquitin system component Cue protein		Ubiquitin system component Cue protein;(source:Araport11)
AT5G32450.1	protein_coding	RNA binding (RRM/RBD/RNP motifs) family protein	ACD11 binding partner, negatively regulates ROS-mediated defense response.	RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G32460.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT5G32470.1	protein_coding	Haem oxygenase-like, multi-helical	The classical thiamin-requiring th2-1 mutation corresponds to At5g32470, encoding a HAD (haloacid dehalogenase) family phosphatase fused to a TenA (thiamin salvage) family protein. The HAD domain is a thiamin monophosphate-selective phosphatase, and the TenA domain has the expected thiamin salvage activity.	heme oxygenase-like, multi-helical;(source:Araport11)
AT5G33380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28430.1);(source:TAIR10)
AT5G33300.1	protein_coding	chromosome-associated kinesin-related		chromosome-associated kinesin-like protein;(source:Araport11)
AT5G33310.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT5G33320.1	protein_coding	Glucose-6-phosphate/phosphate translocator-related	Encodes a plastid inner envelope protein PPT (phosphoenolpyruvate/phosphate translocator) that catalyzes the transport of phosphoenolpyruvate and phosphate across the inner envelope membrane of plastids. The mRNA is cell-to-cell mobile.	Glucose-6-phosphate/phosphate translocator-like protein;(source:Araport11)
AT5G33330.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G33340.1	protein_coding	Eukaryotic aspartyl protease family protein	Encodes a protein with aspartic protease activity (also known as aspartate-type endopeptidase activity). Overexpression of the gene was shown to lead to salicylic acid (SA)-mediated disease resistance upon exposure to the pathogen Pseudomonas syringae. Moreover, overexpression of this gene led to the upregulation of two pathogenesis-related genes PR1 and PR2. This upregulation was no longer observed in transgenic lines expressing the bacterial NahG gene encoding a hydroxylase suppressing SA accumulation.	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G33350.1	pseudogene			pseudogene of Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G33360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT1G17390.1);(source:TAIR10)
AT5G33370.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates. Mutants are defective in cuticle formation with reduced sepal cuticle ridge formation.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G15870.1	protein_coding	glycosyl hydrolase family 81 protein		glycosyl hydrolase family 81 protein;(source:Araport11)
AT5G15960.1	protein_coding	stress-responsive protein (KIN1) / stress-induced protein (KIN1)	cold and ABA inducible protein kin1, possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold, ABA, dehydration and osmoticum (mannitol). However, protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment, suggesting an inhibition of the protein by increased transcript level.	stress-responsive protein (KIN1) / stress-induced protein (KIN1);(source:Araport11)
AT5G15880.1	protein_coding			golgin family A protein;(source:Araport11)
AT5G15970.1	protein_coding	stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6)	Encodes a gene that can be induced by cold and abscisic acid and may be involved in cold acclimation and salt tolerance. The mRNA is cell-to-cell mobile.	stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6);(source:Araport11)
AT5G15890.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 21	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 21;(source:Araport11)
AT5G16060.1	protein_coding	Cytochrome c oxidase biogenesis protein Cmc1-like		Cytochrome c oxidase biogenesis protein Cmc1-like protein;(source:Araport11)
AT5G15980.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Ribosomal pentatricopeptide repeat protein	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G15900.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 19	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 19;(source:Araport11)
AT5G16070.1	protein_coding	TCP-1/cpn60 chaperonin family protein		TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT5G15990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37880.1);(source:TAIR10)
AT5G15910.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G16080.1	protein_coding	carboxyesterase 17		carboxyesterase 17;(source:Araport11)
AT5G16000.1	protein_coding	NSP-interacting kinase 1	NSP-interacting kinase (NIK1), receptor-like kinase, involved in defense response against geminivirus  It acts as a virulence target of the begomovirus nuclear shuttle protein (NSP).	NSP-interacting kinase 1;(source:Araport11)
AT5G15920.1	protein_coding	structural maintenance of chromosomes 5	Encodes SMC5 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 5), a component of the SMC5/6 complex.  SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.	structural maintenance of chromosomes 5;(source:Araport11)
AT5G16010.1	protein_coding	3-oxo-5-alpha-steroid 4-dehydrogenase family protein		3-oxo-5-alpha-steroid 4-dehydrogenase family protein;(source:Araport11)
AT5G15930.1	protein_coding	plant adhesion molecule 1	Encodes a putative plant adhesion molecule.	plant adhesion molecule 1;(source:Araport11)
AT5G16020.1	protein_coding	gamete-expressed 3	Encodes GEX3, a plasma membrane localized protein expressed in the male gametophyte.  Required for micropylar pollen tube guidance.  Also plays a role during early embryogenesis.	gamete-expressed 3;(source:Araport11)
AT5G15940.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G15950.1	protein_coding	Adenosylmethionine decarboxylase family protein		Adenosylmethionine decarboxylase family protein;(source:Araport11)
AT5G16030.1	protein_coding			mental retardation GTPase activating protein;(source:Araport11)
AT5G16040.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT5G16050.1	protein_coding	general regulatory factor 5	Encodes GF14 upsilon chain, a 14-3-3 gene family member.	general regulatory factor 5;(source:Araport11)
AT5G18400.1	protein_coding	Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis		Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesi;(source:Araport11)
AT5G18320.1	protein_coding	ARM repeat superfamily protein	One of three tandemly located, paralogous plant U-box proteins. Mutants show increased sensitivity to water stress.Expression in roots is enhanced by auxin and to a lesser extent ABA and cytokinin treatment.	ARM repeat superfamily protein;(source:Araport11)
AT5G18410.1	protein_coding	transcription activators	distorted trichomes and exhibits a diffuse actin cytoskeleton	transcription activator;(source:Araport11)
AT5G18330.1	protein_coding	ARM repeat superfamily protein	One of three tandemly located, paralogous plant U-box proteins. Expression in root is enhanced by auxin and to a lesser extent ABA and cytokinin.PUB47 is expressed at lower levels than PUB46 and PUB48.  Expression increased in response to salt, osmotic and oxidative stress.	ARM repeat superfamily protein;(source:Araport11)
AT5G18420.1	protein_coding			CCR4-NOT transcription complex subunit;(source:Araport11)
AT5G18340.1	protein_coding	ARM repeat superfamily protein	One of three tandemly located, paralogous plant U-box proteins. Mutants show increased sensitivity to water stress. E3 ligase which acts as a regulator in the heat response signaling pathway. Over-expressing AtPUB48 could induce the expression of the heat-related genes (HSP101, HSP70, HSP25.3, HSFA2, and ZAT12). Enhances plant resistance to heat stress during seed germination and seedling growth.	ARM repeat superfamily protein;(source:Araport11)
AT5G18430.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G18350.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G18440.1	protein_coding		Encodes NUFIP that directs assembly of C/D snoRNP (small nucleolar ribonucleoprotein).	GATA zinc finger protein;(source:Araport11)
AT5G18360.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G18450.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G18370.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	Leucine-rich repeat domain (NLR) receptor. Dominant negative alleles suppress catma3 autoimmunity.	disease resistance protein (TIR-NBS-LRR class) family protein;(source:Araport11)
AT5G18460.1	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal peptidase (DUF239);(source:Araport11)
AT5G18380.1	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT5G18310.1	protein_coding			ubiquitin hydrolase;(source:Araport11)
AT5G18390.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G27420.1	protein_coding	carbon/nitrogen insensitive 1	Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings. The mRNA is cell-to-cell mobile.	carbon/nitrogen insensitive 1;(source:Araport11)
AT5G27340.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G27430.1	protein_coding	Signal peptidase subunit		Signal peptidase subunit;(source:Araport11)
AT5G27350.1	protein_coding	Major facilitator superfamily protein	Encodes a sugar-porter family protein that is induced during leaf senescence.  The increase in its gene expression during leaf senescence is paralleled by an accumulation of monosaccharides. The mRNA is cell-to-cell mobile.	Major facilitator superfamily protein;(source:Araport11)
AT5G27440.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G27360.1	protein_coding	Major facilitator superfamily protein	Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence.	Major facilitator superfamily protein;(source:Araport11)
AT5G27370.1	protein_coding	Protein of unknown function (DUF679)		inactive Serine/Threonine-kinase, putative (DUF679);(source:Araport11)
AT5G27380.1	protein_coding	glutathione synthetase 2	Encodes a protein with similarity to glutathione synthetases, which catalyzes one of the early steps in glutathione biosynthesis. Two transcripts have been detected; the longer transcript is less abundant and the protein is localized to the chloroplast. The smaller transcript, in which the transit peptide is truncated, is localized to the cytosol.	glutathione synthetase 2;(source:Araport11)
AT5G27300.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT5G27310.1	protein_coding	Transcription factor IIS family protein		Transcription factor IIS family protein;(source:Araport11)
AT5G27390.1	protein_coding	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein		tagatose-6-phosphate ketose/aldose isomerase, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein);(source:Araport11)
AT5G27320.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G27400.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Methyltransferase-16, putative (InterPro:IPR019410); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT5G27410.2). Note that the At5g27410.2 gene model (TAIR10) of the adjacent locus has been obsoleted due to the lack of experimental support.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G27330.1	protein_coding	Prefoldin chaperone subunit family protein		Prefoldin chaperone subunit family protein;(source:Araport11)
AT5G27410.1	protein_coding	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT3G05190.1). Note that the At5g27410.2 gene model (TAIR10) has been obsoleted due to the lack of experimental support.	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT5G28450.1	protein_coding	Chlorophyll A-B binding family protein		Chlorophyll A-B binding family protein;(source:Araport11)
AT5G28370.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G28460.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G28340.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G28390.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G28400.1	protein_coding			embryo defective protein;(source:Araport11)
AT5G28410.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G28420.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G28430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.2);(source:TAIR10)
AT5G28350.1	protein_coding	Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor		Quinoprotein amine dehydrogenase, beta chain-like;(source:Araport11)
AT5G28360.1	pseudogene	ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyclopropane-1-carboxylate synthase/ catalytic/ pyridoxal phosphate binding / transferase, transferring nitrogenous groups	a pseudogene belonging to the  1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Transcript has not been detected.	pseudogene of ACC synthase 1;(source:Araport11)
AT5G28440.1	transposable_element_gene	unknown protein		transposable_element_gene;(source:Araport11);unknown protein;(source:TAIR10)
AT5G04190.1	protein_coding	phytochrome kinase substrate 4	Encodes phytochrome kinase substrate 4, a phytochrome signaling component involved in phototropism.  It is phosphorylated in a phot1-dependent manner in vitro. Phosphorylation is transient and regulated by a type 2- protein phosphatase.	phytochrome kinase substrate 4;(source:Araport11)
AT5G04200.1	protein_coding	metacaspase 9	Encodes a putative metacaspase.  Arabidopsis contains three type I MCP genes (MCP1a-c) and six type II MCP genes (MCP2a–f): AtMCP1a/At5g64240, AtMCP1b/At1g02170, AtMCP1c/At4g25110, AtMCP2a/At1g79310, AtMCP2b/At1g79330, AtMCP2c/At1g79320, AtMCP2d/At1g79340, AtMCP2e/At1g16420, AtMCP2f/At5g04200.	metacaspase 9;(source:Araport11)
AT5G04240.1	protein_coding	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein	Early Flowering 6 (ELF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a repressor in the photoperiod pathway. ELF6 interacts with BES1 in a Y2H assay, in vitro, and in Arabidosis protoplasts (based on BiFC). ELF6 may play a role in brassinosteroid signaling by affecting histone methylation in the promoters of BR-responsive genes.	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein;(source:Araport11)
AT5G04110.1	protein_coding	DNA GYRASE B3		DNA GYRASE B3;(source:Araport11)
AT5G04150.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a member of the basic helix-loop-helix transcription factor family protein. Functions as a key regulator of iron-deficiency responses independent of the master regulator FIT. Likely regulates genes involved in the distribution of iron within the plant.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G04210.1	protein_coding	CCCH-type zinc fingerfamily protein with RNA-binding domain		CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT5G04120.1	protein_coding	Phosphoglycerate mutase family protein	Encodes a cofactor-dependent phosphoglycerate mutase (dPGM) - like protein with phosphoserine phosphatase activity that may be responsible for serine anabolism.	Phosphoglycerate mutase family protein;(source:Araport11)
AT5G04160.1	protein_coding	Nucleotide-sugar transporter family protein	UUAT1 is a UDP-Uronic acid transporter that is localized to the Golgi. It is expressed in the seed coat epidermis and is involved in the development of seed coat mucilage.	Nucleotide-sugar transporter family protein;(source:Araport11)
AT5G04220.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G04130.1	protein_coding	DNA GYRASE B2	Encodes a protein that when expressed together with GYRA generates an active supercoiling DNA gyrase enzyme that shares similar properties to its bacterial counterpart, including sensitivity to gyrase-specific antibiotics.	DNA GYRASE B2;(source:Araport11)
AT5G04170.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT5G04230.1	protein_coding	phenyl alanine ammonia-lyase 3	Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes.  Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).	phenyl alanine ammonia-lyase 3;(source:Araport11)
AT5G04140.1	protein_coding	glutamate synthase 1	Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation. The mRNA is cell-to-cell mobile.	glutamate synthase 1;(source:Araport11)
AT5G04180.1	protein_coding	alpha carbonic anhydrase 3		alpha carbonic anhydrase 3;(source:Araport11)
AT5G25210.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G25220.1	protein_coding	KNOTTED1-like homeobox gene 3	A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia	homeobox protein knotted-1-like 3;(source:Araport11)
AT5G25230.1	protein_coding	Ribosomal protein S5/Elongation factor G/III/V family protein		Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT5G25240.1	protein_coding			stress induced protein;(source:Araport11)
AT5G25160.1	protein_coding	zinc finger protein 3	Encodes a zinc finger protein containing only a single zinc finger.	zinc finger protein 3;(source:Araport11)
AT5G25250.1	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family	Encodes a protein that is involved in a membrane microdomain-dependent, but clathrin-independent, endocytic pathway required  for optimal seedling development. The mRNA is cell-to-cell mobile.	SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT5G25170.1	protein_coding	PPPDE putative thiol peptidase family protein		PPPDE putative thiol peptidase family protein;(source:Araport11)
AT5G25260.1	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family	Belongs to the group of plant flotillins, which are plasma membrane proteins. Flot2 complexes may be involved in plant?pathogen interactions, water transport and intracellular trafficking.	SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT5G25180.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 14	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 14;(source:Araport11)
AT5G25190.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G25200.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT5G20840.1	protein_coding	Phosphoinositide phosphatase family protein		Phosphoinositide phosphatase family protein;(source:Araport11)
AT5G20930.1	protein_coding	Protein kinase superfamily protein	Nuclear serine/threonine protein kinase that requires a coiled-coil region for oligomerization and catalytic activity. Required for leaf and flower development and is involved in the regulation of RNA interference. Expression localized to the developing style by stage 13.	Protein kinase superfamily protein;(source:Araport11)
AT5G20850.1	protein_coding	RAS associated with diabetes protein 51	Encodes a homolog of yeast RAD51.  Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation. Also involved in defense gene transcription during plant immune responses.	RAS associated with diabetes protein 51;(source:Araport11)
AT5G20860.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT5G20940.1	protein_coding	Glycosyl hydrolase family protein		Glycosyl hydrolase family protein;(source:Araport11)
AT5G20870.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G20950.1	protein_coding	Glycosyl hydrolase family protein	Encodes a beta-glucosidase involved in xyloglucan metabolism.	Glycosyl hydrolase family protein;(source:Araport11)
AT5G20880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);retrotransposon family;(source:TAIR10)
AT5G20960.1	protein_coding	aldehyde oxidase 1	Encodes aldehyde oxidase AA01.	aldehyde oxidase 1;(source:Araport11)
AT5G20890.1	protein_coding	TCP-1/cpn60 chaperonin family protein		TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT5G20970.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT5G20900.1	protein_coding	jasmonate-zim-domain protein 12		jasmonate-zim-domain protein 12;(source:Araport11)
AT5G20980.1	protein_coding	methionine synthase 3	encodes a plastidic methionine synthase, involved in methionine de novo synthesis in the chloroplast	methionine synthase 3;(source:Araport11)
AT5G20910.1	protein_coding	RING/U-box superfamily protein	Encodes an E3 ligase that can interact with and polyubiquitinate ABI3 in vitro.  AIP2 likely negatively regulates ABA signaling by targeting ABI3 for post-translational destruction.	RING/U-box superfamily protein;(source:Araport11)
AT5G20920.1	protein_coding	eukaryotic translation initiation factor 2 beta subunit	protein synthesis initiation factor eIF2 beta	eukaryotic translation initiation factor 2 beta subunit;(source:Araport11)
AT5G29040.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT5G29050.1	protein_coding	Protein of unknown function (DUF3287)		hypothetical protein (DUF3287);(source:Araport11)
AT5G29070.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G29090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33131.1);(source:TAIR10)
AT5G29100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-12 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G29210.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G54450.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G54460.1	protein_coding	wound-responsive protein-related		wound-responsive protein-like protein;(source:Araport11)
AT5G54470.1	protein_coding	B-box type zinc finger family protein		B-box type zinc finger family protein;(source:Araport11)
AT5G54480.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		hypothetical protein (DUF630 and DUF632);(source:Araport11)
AT5G54490.1	protein_coding	pinoid-binding protein 1	Encodes a PINOID (PID)-binding protein containing putative EF-hand calcium-binding motifs.  The interaction is dependent on the presence of calcium. mRNA expression is up-regulated by auxin. Not a phosphorylation target of PID, likely acts upstream of PID to regulate the activity of this protein in response to changes in calcium levels.	pinoid-binding protein 1;(source:Araport11)
AT5G54410.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G54500.1	protein_coding	flavodoxin-like quinone reductase 1	Encodes a flavin mononucleotide-binding flavodoxin-like quinone reductase that is a primary auxin-response gene.	flavodoxin-like quinone reductase 1;(source:Araport11)
AT5G54420.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G54510.1	protein_coding	Auxin-responsive GH3 family protein	Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins.  Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).	Auxin-responsive GH3 family protein;(source:Araport11)
AT5G54430.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT5G54440.1	protein_coding	CLUB	Encodes a putative TRAPPII tethering factor required for cell plate assembly during cytokinesis. Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	CLUB;(source:Araport11)
AT5G36690.1	protein_coding		AT5G36690 and AT5G36780 represent identical copies. The duplication within clone F27C7 is believed an artifact with only one true copy existing.	proton pump-interactor;(source:Araport11)
AT5G36700.1	protein_coding	2-phosphoglycolate phosphatase 1		2-phosphoglycolate phosphatase 1;(source:Araport11)
AT5G36710.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G36720.1	protein_coding	Plant thionin family protein	Thionin-like gene.	Plant thionin family protein;(source:Araport11)
AT5G36730.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G36660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G36680.1	protein_coding	Protein of Unknown Function (DUF239)		Pol-like polyprotein/retrotransposon, putative (DUF239);(source:Araport11)
AT5G28480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28270.1);(source:TAIR10)
AT5G28490.1	protein_coding	Protein of unknown function (DUF640)	Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.	LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
AT5G28470.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G28220.1	protein_coding	Protein prenylyltransferase superfamily protein		Protein prenylyltransferase superfamily protein;(source:Araport11)
AT5G28230.1	pseudogene			pseudogene of glucose-6-phosphate/phosphate translocator 2;(source:Araport11)
AT5G28200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, various predicted proteins, Arabidopsis thaliana;(source:TAIR10)
AT5G28210.1	protein_coding	mRNA capping enzyme family protein		mRNA capping enzyme family protein;(source:Araport11)
AT5G19860.1	protein_coding	Protein of unknown function, DUF538		transmembrane protein, putative (Protein of unknown function, DUF538);(source:Araport11)
AT5G19950.1	protein_coding	Domain of unknown function (DUF1767)		tudor domain protein (DUF1767);(source:Araport11)
AT5G19960.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G19880.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G20050.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G19970.1	protein_coding			GRAS family transcription factor family protein;(source:Araport11)
AT5G19890.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G20060.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G19980.1	protein_coding	golgi nucleotide sugar transporter 4	Encodes a Golgi-localized nucleotide-sugar transporter.	golgi nucleotide sugar transporter 4;(source:Araport11)
AT5G19900.1	protein_coding	PRLI-interacting factor, putative		PRLI-interacting factor;(source:Araport11)
AT5G20070.1	protein_coding	nudix hydrolase homolog 19		nudix hydrolase homolog 19;(source:Araport11)
AT5G19990.1	protein_coding	regulatory particle triple-A ATPase 6A	26S proteasome AAA-ATPase subunit The mRNA is cell-to-cell mobile.	regulatory particle triple-A ATPase 6A;(source:Araport11)
AT5G19910.1	protein_coding	SOH1 family protein		SOH1 family protein;(source:Araport11)
AT5G20080.1	protein_coding	FAD/NAD(P)-binding oxidoreductase		FAD/NAD(P)-binding oxidoreductase;(source:Araport11)
AT5G20000.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT5G19920.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G20090.1	protein_coding	Uncharacterised protein family (UPF0041)	MPC1 negatively regulates ABA enhanced slow anion channel function during stomatal closure.	Uncharacterized protein family (UPF0041);(source:Araport11)
AT5G20010.1	protein_coding	RAS-related nuclear protein-1	A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins.  May also be involved in cell cycle progression. The mRNA is cell-to-cell mobile.	RAS-related nuclear protein-1;(source:Araport11)
AT5G19930.1	protein_coding	Protein of unknown function DUF92, transmembrane	PGR is putative plasma membrane glucose- responsive regulator that is expressed in response to glucose stimulation.RNAi knockdown mutant seeds have enhanced sensitivity to glucose and 2-deoxyglucose.	integral membrane protein (Protein of unknown function DUF92, transmembrane);(source:Araport11)
AT5G20100.1	protein_coding			plant/protein;(source:Araport11)
AT5G20020.1	protein_coding	RAS-related GTP-binding nuclear protein 2	A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins.  May also be involved in cell cycle progression.	RAS-related GTP-binding nuclear protein 2;(source:Araport11)
AT5G19940.1	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT5G20110.1	protein_coding	Dynein light chain type 1 family protein		Dynein light chain type 1 family protein;(source:Araport11)
AT5G20030.1	protein_coding	Plant Tudor-like RNA-binding protein		Plant Tudor-like RNA-binding protein;(source:Araport11)
AT5G20040.1	protein_coding	isopentenyltransferase 9	Encodes tRNA isopentenyltransferase AtIPT9.	isopentenyltransferase 9;(source:Araport11)
AT5G58020.1	protein_coding		Encodes a replication termination factor 2 domain containing protein involved in the regulation of pre-mRNA splicing.	RTF2 RING-finger protein;(source:Araport11)
AT5G14900.1	protein_coding	helicase associated (HA2) domain-containing protein		helicase associated (HA2) domain-containing protein;(source:Araport11)
AT5G14980.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G14910.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G14990.1	protein_coding			WPP domain associated protein;(source:Araport11)
AT5G15080.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G14920.1	protein_coding	Gibberellin-regulated family protein	Encodes a GASA domain containing protein that  regulates increases in plant growth through GA-induced and DELLA-dependent signal transduction and that can increase abiotic stress resistance by reducing ROS accumulation.	Gibberellin-regulated family protein;(source:Araport11)
AT5G15000.1	protein_coding		Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis family protein;(source:Araport11)
AT5G15090.1	protein_coding	voltage dependent anion channel 3	Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol. Purified VDAC3 is shown to have voltage-dependent anion channel activity.	voltage dependent anion channel 3;(source:Araport11)
AT5G14930.1	protein_coding	senescence-associated gene 101	encodes an acyl hydrolase involved in senescence .	senescence-associated gene 101;(source:Araport11)
AT5G15010.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G15100.1	protein_coding	Auxin efflux carrier family protein	Encodes an auxin transporter with a strong expression in a male gametophyte. Mutant studies reveal a role for auxin transport in regulating pollen development and function.   It acts together with PIN5.	Auxin efflux carrier family protein;(source:Araport11)
AT5G14940.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G15020.1	protein_coding	SIN3-like 2	Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).	SIN3-like 2;(source:Araport11)
AT5G15110.1	protein_coding	Pectate lyase family protein		Pectate lyase family protein;(source:Araport11)
AT5G14950.1	protein_coding	golgi alpha-mannosidase II	Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans.	golgi alpha-mannosidase II;(source:Araport11)
AT5G15030.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		paired amphipathic helix Sin3-like protein;(source:Araport11)
AT5G14960.1	protein_coding	DP-E2F-like 2		DP-E2F-like 2;(source:Araport11)
AT5G15040.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT5G14970.1	protein_coding			seed maturation-like protein;(source:Araport11)
AT5G15050.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	Encodes GlcAT14B. Has glucuronosyltransferase activity adding glucuronic acid residues to beta-1,3- and beta-1,6-linked galactans.	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G15060.1	protein_coding	Lateral organ boundaries (LOB) domain family protein		Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT5G15070.1	protein_coding	Phosphoglycerate mutase-like family protein	Encodes a functional VIP1/PPIP5K-type ATP-grasp kinase that is involved in both InsP6 to InsP7 conversion and InsP7 to InsP8 conversion. It is the minor isoform in plants and is expressed in pollen.	Phosphoglycerate mutase-like family protein;(source:Araport11)
AT5G11210.1	protein_coding	glutamate receptor 2.5	member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.5;(source:Araport11)
AT5G11140.1	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT5G11220.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G11310.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	The SOAR1 gene encodes a pentatricopeptide repeat (PPR) protein which localizes to both the cytosol and nucleus. Down-regulation of SOAR1 strongly enhances, but up-regulation of SOAR1 almost completely impairs, ABA responses, revealing that SOAR1 is a critical, negative, regulator of ABA signalling. Further genetic evidence supports that SOAR1 functions downstream of ABAR and probably upstream of an ABA-responsive transcription factor ABI5. Changes in the SOAR1 expression alter expression of a subset of ABA-responsive genes including ABI5. These findings provide important information to elucidate further the functional mechanism of PPR proteins and the complicated ABA signalling network.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G11150.1	protein_coding	vesicle-associated membrane protein 713	Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.	vesicle-associated membrane protein 713;(source:Araport11)
AT5G11230.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT5G11320.1	protein_coding	Flavin-binding monooxygenase family protein	Belongs to the YUC gene family.  Encodes a predicted flavin monooxygenase. YUC4 is part of a pathway linking auxin biosynthesis and gynoecium development.	Flavin-binding monooxygenase family protein;(source:Araport11)
AT5G11160.1	protein_coding	adenine phosphoribosyltransferase 5		adenine phosphoribosyltransferase 5;(source:Araport11)
AT5G11240.1	protein_coding	transducin family protein / WD-40 repeat family protein	GHS40 encodes a WD40 protein, that is localized in the nucleus and nucleolus. In the presence of high glucose it negatively regulates the expression of  abscisic acid degradation and signaling genes.	transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G11330.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT5G11170.1	protein_coding	DEAD/DEAH box RNA helicase family protein 	One of two genes encoding an ATP-dependent RNA helicase that localizes predominantly to euchromatic regions of Arabidopsis nuclei, and associates with genes transcribed by RNA polymerase II independently from the presence of introns.  It is not detected at non-transcribed loci. It interacts with ssRNA, dsRNA and dsDNA, but not with ssDNA. Its ATPase activity is stimulated by RNA and dsDNA and its ATP-dependent RNA helicase activity unwinds dsRNA but not dsDNA.	DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT5G11250.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class)	Encodes an atypical TIR-NBS-LRR protein that is involved in stress responses. Loss of function alleles overproduce stress hormones JA,SA, ABA, and ET.	Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G11340.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT5G11180.1	protein_coding	glutamate receptor 2.6	member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.6;(source:Araport11)
AT5G11260.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.Involved in the regulation of response to nutrient levels.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT5G11270.1	protein_coding	overexpressor of cationic peroxidase 3	Encodes a homeodomain transcription factor involved in mediating resistance to infection by necrotrophic pathogens dependent on perception of jasmonic acid through COI1. Expressed in the nucleus. Downregulated upon fungal infection. Also involved in drought tolerance.	overexpressor of cationic peroxidase 3;(source:Araport11)
AT5G11360.1	protein_coding	Interleukin-1 receptor-associated kinase 4 protein		Interleukin-1 receptor-associated kinase 4 protein;(source:Araport11)
AT5G11190.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G11200.1	protein_coding	DEAD/DEAH box RNA helicase family protein 	One of two genes encoding an ATP-dependent RNA helicase that localizes predominantly to euchromatic regions of Arabidopsis nuclei, and associates with genes transcribed by RNA polymerase II independently from the presence of introns.  It is not detected at non-transcribed loci. It interacts with ssRNA, dsRNA and dsDNA, but not with ssDNA. Its ATPase activity is stimulated by RNA and dsDNA and its ATP-dependent RNA helicase activity unwinds dsRNA but not dsDNA.	DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT5G11280.1	protein_coding			tail fiber;(source:Araport11)
AT5G11370.1	protein_coding	FBD / Leucine Rich Repeat domains containing protein		FBD / Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G11290.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT5G11380.1	protein_coding	1-deoxy-D-xylulose 5-phosphate synthase 3	Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.	1-deoxy-D-xylulose 5-phosphate synthase 3;(source:Araport11)
AT5G11300.1	protein_coding	mitotic-like cyclin 3B from Arabidopsis	mitotic-like cyclin, core cell cycle gene that is expressed only in roots (RT_PCR), portions with mitotic activity only (whole mount in situ).	mitotic-like cyclin 3B from Arabidopsi;(source:Araport11)
AT5G11390.1	protein_coding	WPP domain-interacting protein 1	Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390, WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells.  Ran GTPase plays essential roles in multiple cellular processes, including nucleocytoplasmic transport, spindle formation, and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs).  WIT1 and WIT2 have been identified as a second family of CC-TMD proteins, structurally similar, yet clearly distinct from the WIP family, that is required for RanGAP nuclear envelop association in root tip cells.	WPP domain-interacting protein 1;(source:Araport11)
AT5G11400.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G16860.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G16950.1	protein_coding			krueppel-like factor;(source:Araport11)
AT5G16870.1	protein_coding	Peptidyl-tRNA hydrolase II (PTH2) family protein		Peptidyl-tRNA hydrolase II (PTH2) family protein;(source:Araport11)
AT5G16960.1	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G16880.1	protein_coding	Target of Myb protein 1		Target of Myb protein 1;(source:Araport11)
AT5G17050.1	protein_coding	UDP-glucosyl transferase 78D2	The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.	UDP-glucosyl transferase 78D2;(source:Araport11)
AT5G16970.1	protein_coding	alkenal reductase	encodes a 2-alkenal reductase (EC 1.3.1.74), plays a key role in the detoxification of reactive carbonyls	alkenal reductase;(source:Araport11)
AT5G16890.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT5G17060.1	protein_coding	ADP-ribosylation factor B1B	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster), other ARFs and ARF-like proteins.	ADP-ribosylation factor B1B;(source:Araport11)
AT5G16980.1	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G16900.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G17150.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT5G17070.1	protein_coding		Encodes a PP4R2 domain protein that likely functions as a regulatory subunit of PP4, a highly conserved ser/thr protein phosphatase.	serine/threonine-protein phosphatase 4 regulatory subunit-like protein;(source:Araport11)
AT5G16990.1	protein_coding	Zinc-binding dehydrogenase family protein	molecular function has not been defined, was shown involved in oxidative stress tolerance. The mRNA is cell-to-cell mobile.	Zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G16910.1	protein_coding	cellulose-synthase like D2	encodes a gene similar to cellulose synthase. Located in Golgi membranes. The mRNA is cell-to-cell mobile.	cellulose-synthase like D2;(source:Araport11)
AT5G17160.1	protein_coding			aspartic/glutamic acid-rich protein;(source:Araport11)
AT5G17080.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT5G17000.1	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G16920.1	protein_coding	Fasciclin-like arabinogalactan family protein		Fasciclin-like arabinogalactan family protein;(source:Araport11)
AT5G17090.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT5G17010.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G16930.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT5G17100.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT5G17020.1	protein_coding	exportin 1A	Encodes a member of the exportin protein family (XPO1A) which functions as receptors for nuclear export. Binds to a variety of proteins having  leucine rich export signals.Along with XPO1B involved with development of the male and female gametophytes.	exportin 1A;(source:Araport11)
AT5G16940.1	protein_coding	carbon-sulfur lyases		carbon-sulfur lyase;(source:Araport11)
AT5G17110.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT5G17030.1	protein_coding	UDP-glucosyl transferase 78D3		UDP-glucosyl transferase 78D3;(source:Araport11)
AT5G17120.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT5G17040.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G17130.1	protein_coding	cysteine-type peptidases		cysteine-type peptidase;(source:Araport11)
AT5G17140.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT5G59440.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of  263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G59450.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT5G59370.1	protein_coding	actin 4	Encodes one of eight Arabidopsis actins.  ACT4 belongs to the reproductive actin subclass which is predominantly expressed in developing and reproductive tissues, such as pollen, pollen tubes, ovules, and developing seeds.  Expression of the ACT4/GUS fusion was restricted to young vascular tissues, tapetum, and developing and mature pollen.	actin 4;(source:Araport11)
AT5G59540.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G59380.1	protein_coding	methyl-CPG-binding domain 6	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. The mRNA is cell-to-cell mobile.	methyl-CPG-binding domain 6;(source:Araport11)
AT5G59460.1	protein_coding	scarecrow-like transcription factor 11 (SCL11)		scarecrow-like transcription factor 11 (SCL11);(source:Araport11)
AT5G59550.1	protein_coding	zinc finger (C3HC4-type RING finger) family protein	Encodes an ABA- and drought-induced RING-DUF1117 gene whose mutation results in hyposensitive phenotypes toward ABA in terms of germination rate and stomatal closure and markedly reduced tolerance to drought stress relative to wild-type plants.	zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT5G59390.1	protein_coding	XH/XS domain-containing protein		XH/XS domain-containing protein;(source:Araport11)
AT5G59470.1	protein_coding	Mannose-P-dolichol utilization defect 1 protein		Mannose-P-dolichol utilization defect 1 protein;(source:Araport11)
AT5G59560.1	protein_coding	sensitivity to red light reduced protein (SRR1)	Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling.	sensitivity to red light reduced protein (SRR1);(source:Araport11)
AT5G59400.1	protein_coding			PGR5-like A protein;(source:Araport11)
AT5G59480.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G59570.1	protein_coding	Homeodomain-like superfamily protein	Encodes BOA (BROTHER OF LUX ARRHYTHMO), a component of the circadian clock. The mRNA is cell-to-cell mobile.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G59410.1	protein_coding	Rab5-interacting family protein		Rab5-interacting family protein;(source:Araport11)
AT5G59490.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G59580.1	protein_coding	UDP-glucosyl transferase 76E1		UDP-glucosyl transferase 76E1;(source:Araport11)
AT5G59420.1	protein_coding	OSBP(oxysterol binding protein)-related protein 3C		OSBP(oxysterol binding protein)-related protein 3C;(source:Araport11)
AT5G59500.1	protein_coding	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases		protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase;(source:Araport11)
AT5G59590.1	protein_coding	UDP-glucosyl transferase 76E2		UDP-glucosyl transferase 76E2;(source:Araport11)
AT5G59430.1	protein_coding	telomeric repeat binding protein 1	Encodes a telomeric repeat binding protein with a DNA binding domain at its C terminus. The DNA binding domain has a preference for GGTTTAG sequences and at least five of these repeats are required for recognition by a nearly full-length TRP1 protein.	telomeric repeat binding protein 1;(source:Araport11)
AT5G59600.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G59520.1	protein_coding	ZRT/IRT-like protein 2	encodes a metal ion transporter whose expression is regulated by copper.	ZRT/IRT-like protein 2;(source:Araport11)
AT5G59530.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G26840.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G26760.1	protein_coding		Encodes RPAP2 IYO Mate (RIMA), a homologue of yeast and human proteins linked to nuclear import of selective cargo. Knockdown of RIMA causes delayed onset of cell differentiation.	RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein;(source:Araport11)
AT5G26850.1	protein_coding	Uncharacterized protein		Uncharacterized protein;(source:Araport11)
AT5G26770.1	protein_coding		NEAP2 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.	myosin heavy chain, cardiac protein;(source:Araport11)
AT5G26940.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Encodes a Mg2+-dependent DNA exonuclease that degrades organelle DNA during Arabidopsis pollen development.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G26860.1	protein_coding	lon protease 1	Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790).  Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells.  Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins. The mRNA is cell-to-cell mobile.	lon protease 1;(source:Araport11)
AT5G26780.1	protein_coding	serine hydroxymethyltransferase 2	Encodes a protein with serine hydroxymethyltransferase activity which is thought to be localized in the mitochondrial matrix. SHM2 expression fails to rescue the conditional lethal phenotype of the shm1-1 mutant, defective in SHM1.	serine hydroxymethyltransferase 2;(source:Araport11)
AT5G26950.1	protein_coding	AGAMOUS-like 93		AGAMOUS-like 93;(source:Araport11)
AT5G26790.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G26960.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G26880.1	protein_coding	AGAMOUS-like 26	Root Specific	tRNA (cytidine(34)-2-O)-methyltransferase;(source:Araport11)
AT5G26800.1	protein_coding			xaa-pro aminopeptidase P;(source:Araport11)
AT5G26970.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G26890.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G26810.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G26980.1	protein_coding	syntaxin of plants 41	member of SYP4 Gene Family	syntaxin of plants 41;(source:Araport11)
AT5G26900.1	protein_coding	Transducin family protein / WD-40 repeat family protein	No expression of gene detected yet.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G26820.1	protein_coding	iron-regulated protein 3	Mutations in MAR1 confer  resistance, while MAR1 overexpression causes hypersensitivity to multiple aminoglycoside  antibiotics. Localizes to the chloroplast envelope. MAR1 may act as a plastid transporter involved in cellular iron homeostasis. The mRNA is cell-to-cell mobile.	iron-regulated protein 3;(source:Araport11)
AT5G26990.1	protein_coding	Drought-responsive family protein		Drought-responsive family protein;(source:Araport11)
AT5G26910.1	protein_coding		Encodes a member of the TRM superfamily, that plays a role in preprophase band formation during plant cell division and controls the robustness of the orientation of that cell division.	GPI-anchored adhesin-like protein;(source:Araport11)
AT5G26830.1	protein_coding	Threonyl-tRNA synthetase	Encodes a dual-targeted threonyl-tRNA synthetase found in both the chloroplast and mitochondrion. The mRNA is cell-to-cell mobile.	Threonyl-tRNA synthetase;(source:Araport11)
AT5G27000.1	protein_coding	kinesin 4	Encodes a kinesin-like protein that binds microtubules in an ATP-dependent manner.	kinesin 4;(source:Araport11)
AT5G26920.1	protein_coding	Cam-binding protein 60-like G	Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g).  The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants.  cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.	Cam-binding protein 60-like G;(source:Araport11)
AT5G27010.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G26930.1	protein_coding	GATA transcription factor 23	Encodes a member of the GATA factor family of zinc finger transcription factors. Controls lateral root founder cell specification.	GATA transcription factor 23;(source:Araport11)
AT5G27020.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G27030.1	protein_coding	TOPLESS-related 3		TOPLESS-related 3;(source:Araport11)
AT5G32540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, predicted proteins, Arabidopsis thaliana similar to hypothetical protein GI:4263830 from (Arabidopsis thaliana) (similar to MYOSIN HEAVY CHAIN (Encephalitozoon cuniculi) GI:19074177) similar to hypothetical protein GI:4263830 from (Arabidopsis thaliana) (similar to MYOSIN HEAVY CHAIN (Encephalitozoon cuniculi) GI:19074177) (similar to MYOSIN HEAVY CHAIN (Encephalitozoon cuniculi) GI:19074177);(source:TAIR10)
AT5G32580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.2e-241 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G32590.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT5G32520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, expressed protein, predicted proteins, Arabidopsis thaliana and others;(source:TAIR10)
AT5G29020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1);(source:TAIR10)
AT5G28940.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07630.1);(source:TAIR10)
AT5G29030.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT5G28950.1	protein_coding			nuclease;(source:Araport11)
AT5G28960.1	protein_coding			alpha-(1,6)-fucosyltransferase;(source:Araport11)
AT5G28970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35110.1);(source:TAIR10)
AT5G28980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1);(source:TAIR10)
AT5G28990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03979.1);(source:TAIR10)
AT5G29000.1	protein_coding	Homeodomain-like superfamily protein	MYB-CC family member. PHL1 acts redundantly with PHR1 to regulate responses to Pi starvation.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G28930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G07240.1);(source:TAIR10)
AT5G28710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to A, contains similarity to hypothetical proteins;(source:TAIR10)
AT5G28640.1	protein_coding	SSXT family protein	Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.	SSXT family protein;(source:Araport11)
AT5G28650.1	protein_coding	WRKY DNA-binding protein 74	member of WRKY Transcription Factor; Group II-d	WRKY DNA-binding protein 74;(source:Araport11)
AT5G28660.1	protein_coding	NHL domain-containing protein		NHL domain-containing protein;(source:Araport11)
AT5G28670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, predicted helicase proteins, Arabidopsis thaliana;(source:TAIR10)
AT5G28680.1	protein_coding	Malectin/receptor-like protein kinase family protein	Receptor-like kinase required  for maintenance of pollen tube growth. Display polar localization at  the plasma membrane of the pollen tube tip.	Malectin/receptor-like protein kinase family protein;(source:Araport11)
AT5G28690.1	protein_coding	Protein of unknown function (DUF1685)		carboxylate clamp-TPR protein (DUF1685);(source:Araport11)
AT5G28700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OSJNBa0026J14.30, various predicted proteins, Arabidopsis thaliana and others;(source:TAIR10)
AT5G28630.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT5G16830.1	protein_coding	syntaxin of plants  21	member of SYP2 Gene Family. Over-expression of the gene in tobacco protoplasts leads to a disruption of vacuolar transport from the prevacuolar compartment (PVC) to the vacuole, but not from the Golgi apparatus to the plasma membrane.	syntaxin of plants 21;(source:Araport11)
AT5G16750.1	protein_coding	Transducin family protein / WD-40 repeat family protein	Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G16840.1	protein_coding	binding partner of acd11 1	Binds to ACD11 and fungal elicitor RxLR207. Regulates ROS mediated defense response.	binding partner of acd11 1;(source:Araport11)
AT5G16850.1	protein_coding	telomerase reverse transcriptase	Encodes the catalytic subunit of telomerase reverse transcriptase. Involved in telomere homeostasis. Homozygous double mutants with ATR show gross morphological defects over a period of generations. TERT shows Class II telomerase activity in vitro, indicating that it can initiate de novo telomerase synthesis on non-telomeric DNA, often using a preferred position within the telomerase-bound RNA. Loss of function mutants have reduced telomere length in roots and over a period of generations, decreasing root meristem function.	telomerase reverse transcriptase;(source:Araport11)
AT5G16760.1	protein_coding	Inositol 1,3,4-trisphosphate 5/6-kinase family protein	Encodes a inositol 1,3,4-trisphosphate 5/6-kinase. Catalyzes the phosphorylation of phytic acid (InsP6) to the symmetric InsP7 isomer 5-InsP7.	Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11)
AT5G16770.1	protein_coding	myb domain protein 9	Member of the R2R3 factor gene family.	myb domain protein 9;(source:Araport11)
AT5G16700.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT5G16780.1	protein_coding	SART-1 family	Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower. In the roots DOT2 appears to be require for normal meristem organization and maintenance and the proper expression of PIN and PLT genes.	SART-1 family;(source:Araport11)
AT5G16710.1	protein_coding	dehydroascorbate reductase 1	DHAR3 protein undergoes thiolation following treatment with the  oxidant tert-butylhydroperoxide.Encodes 30-40% of extractable leaf GSH-dependent DHAR activity. Single knockout mutants show unaltered ascorbate and glutathione status in optimal and oxidative stress conditions.Makes a minor contribution to glutathione oxidation in response to increased intracellular hydrogen peroxide (catalase deficiency) (PMID:28381499).	dehydroascorbate reductase 1;(source:Araport11)
AT5G16790.1	protein_coding	Tho complex subunit 7/Mft1p	Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	Tho complex subunit 7/Mft1p;(source:Araport11)
AT5G16720.1	protein_coding	Protein of unknown function, DUF593		caldesmon-like protein (Protein of unknown function, DUF593);(source:Araport11)
AT5G16800.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT5G16730.1	protein_coding	Plant protein of unknown function (DUF827)	Encodes a microtubule-associated protein. The mRNA is cell-to-cell mobile.	weak chloroplast movement under blue light protein (DUF827);(source:Araport11)
AT5G16810.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G16740.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT5G16820.1	protein_coding	heat shock factor 3	Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP.  Required early in the stress response for transient expression of heat shock genes.	heat shock factor 3;(source:Araport11)
AT5G36830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36734.1);(source:TAIR10)
AT5G36840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24380.1);(source:TAIR10)
AT5G36850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1);(source:TAIR10)
AT5G36870.1	protein_coding	glucan synthase-like 9	encodes a gene similar to callose synthase	glucan synthase-like 9;(source:Araport11)
AT5G36860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14770.2);(source:TAIR10)
AT5G36790.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G36880.1	protein_coding	acetyl-CoA synthetase	Encodes a plastidic acetyl-coA synthetase. This enzyme plays a role in converting acetate to acetyl-coA in the plastids. It does not appear to be a major contributor to  fatty acid biosynthesis based on mutant phenotypes. The enzyme seems to act as a monomer and may play an important role  in preventing the toxic accumulation of fermentation products including acetaldehyde, acetate, and ethanol. It participates in  the pyruvate dehydrogenase bypass pathway	acetyl-CoA synthetase;(source:Araport11)
AT5G36810.1	protein_coding			U3 small nucleolar RNA-associated protein;(source:Araport11)
AT5G20360.1	protein_coding	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT5G20280.1	protein_coding	sucrose phosphate synthase 1F	Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted.	sucrose phosphate synthase 1F;(source:Araport11)
AT5G20200.1	protein_coding	nucleoporin-related		nucleoporin-like protein;(source:Araport11)
AT5G20370.1	protein_coding	serine-rich protein-related		serine-rich protein-like protein;(source:Araport11)
AT5G20290.1	protein_coding	Ribosomal protein S8e family protein		Ribosomal protein S8e family protein;(source:Araport11)
AT5G20380.1	protein_coding	phosphate transporter 4;5	Encodes an inorganic phosphate transporter (PHT4;5).	phosphate transporter 4;(source:Araport11)
AT5G20300.1	protein_coding	Avirulence induced gene (AIG1) family protein	Encodes Toc90, part of the TOC (translocon at the outer chloroplast membrane) machinery involved in the import of nucleus-encoded proteins into the chloroplast.	Avirulence induced gene (AIG1) family protein;(source:Araport11)
AT5G20390.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT5G20400.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus. The mRNA is cell-to-cell mobile.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G20120.1	protein_coding			testis- and ovary-specific PAZ domain protein;(source:Araport11)
AT5G20130.1	protein_coding			sulfate adenylyltransferase subunit;(source:Araport11)
AT5G20220.1	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT5G20140.1	protein_coding	SOUL heme-binding family protein	Encodes a haem-binding protein, HBP5. HBP5 binds haem and interacts with the haem oxygenase, HY1. Disrupting the binding of HBP5 to HY1 leads to oxidative stress.	SOUL heme-binding family protein;(source:Araport11)
AT5G20310.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT5G20230.1	protein_coding	blue-copper-binding protein	Encodes a Al-stress-induced gene. Along with TCF, it promotes lignin biosynthesis in response to cold stress. The mRNA is cell-to-cell mobile.	blue-copper-binding protein;(source:Araport11)
AT5G20150.1	protein_coding	SPX  domain gene 1	Expression is upregulated in the shoot of cax1/cax3 mutant. Additionally, its expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots. The mRNA is cell-to-cell mobile.	SPX domain-containing protein 1;(source:Araport11)
AT5G20320.1	protein_coding	dicer-like 4	Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling.  It binds DRB4, a ds-RNA binding protein.	dicer-like 4;(source:Araport11)
AT5G20240.1	protein_coding	K-box region and MADS-box transcription factor family protein 	Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G20160.1	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT5G20410.1	protein_coding	monogalactosyldiacylglycerol synthase 2	Encodes a type B monogalactosyldiacylglycerol (MGDG) synthase. Strongly induced by phosphate deprivation, and in non-photosynthetic tissues. Does not contribute to galactolipid synthesis under Pi-sufficient conditions but does under Pi starvation.	monogalactosyldiacylglycerol synthase 2;(source:Araport11)
AT5G20330.1	protein_coding	beta-1,3-glucanase 4		beta-1,3-glucanase 4;(source:Araport11)
AT5G20250.1	protein_coding	Raffinose synthase family protein	encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. The mRNA is cell-to-cell mobile.	Raffinose synthase family protein;(source:Araport11)
AT5G20340.1	protein_coding	beta-1,3-glucanase 5	Encodes a putative beta 1,3-glucanase.	beta-1,3-glucanase 5;(source:Araport11)
AT5G20170.1	protein_coding	RNA polymerase II transcription mediators		RNA polymerase II transcription mediator;(source:Araport11)
AT5G20180.1	protein_coding	Ribosomal protein L36		Ribosomal protein L36;(source:Araport11)
AT5G20260.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT5G20350.1	protein_coding	Ankyrin repeat family protein with DHHC zinc finger domain	Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth. The mRNA is cell-to-cell mobile.	Ankyrin repeat family protein with DHHC zinc finger domain-containing protein;(source:Araport11)
AT5G20190.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G20270.1	protein_coding	heptahelical transmembrane protein1	heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors	heptahelical transmembrane protein1;(source:Araport11)
AT5G24930.1	protein_coding	CONSTANS-like 4	Flowering repressor in long days (LD) and short days (SD) and acts on the expression of FT and FT-like genes as well as on SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 (SOC1).	zinc finger CONSTANS-like protein;(source:Araport11)
AT5G24850.1	protein_coding	cryptochrome 3	Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.	cryptochrome 3;(source:Araport11)
AT5G24940.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT5G24860.1	protein_coding	flowering promoting factor 1	encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice.	flowering promoting factor 1;(source:Araport11)
AT5G24950.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 15	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 15;(source:Araport11)
AT5G24870.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G24880.1	protein_coding			chromo domain cec-like protein;(source:Araport11)
AT5G24810.1	protein_coding	ABC1 family protein		ABC1 family protein;(source:Araport11)
AT5G24890.1	protein_coding			stress response NST1-like protein;(source:Araport11)
AT5G24820.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G24900.1	protein_coding	cytochrome P450, family 714, subfamily A, polypeptide 2	Member of CYP714A. Encodes one of the two tandemly duplicated gene pair ELA1 (CYP714A1) and ELA2 (CYP714A2), homologs of the rice cytochrome P450 monooxygenase gene EUI1. Double mutation of ELA1 and ELA2 results in increased biomass and enlarged organs.	cytochrome P450, family 714, subfamily A, polypeptide 2;(source:Araport11)
AT5G24830.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G24910.1	protein_coding	cytochrome P450, family 714, subfamily A, polypeptide 1	Member of CYP714A. Encodes one of the two tandemly duplicated gene pair ELA1 (CYP714A1) and ELA2 (CYP714A2), homologs of the rice cytochrome P450 monooxygenase gene EUI1. Double mutation of ELA1 and ELA2 results in increased biomass and enlarged organs.	cytochrome P450, family 714, subfamily A, polypeptide 1;(source:Araport11)
AT5G24840.1	protein_coding	tRNA (guanine-N-7) methyltransferase		tRNA (guanine-N-7) methyltransferase;(source:Araport11)
AT5G24920.1	protein_coding	glutamine dumper 5	Encodes a member of the GDU (glutamine dumper) family proteins involved in amino acid export: At4g31730 (GDU1), At4g25760 (GDU2), At5g57685 (GDU3), At2g24762 (GDU4), At5g24920 (GDU5), At3g30725 (GDU6) and At5g38770 (GDU7).	glutamine dumper 5;(source:Araport11)
AT5G43880.1	protein_coding	Protein of unknown function (DUF3741)		methyl-coenzyme M reductase II subunit gamma, putative (DUF3741);(source:Araport11)
AT5G43890.1	protein_coding	Flavin-binding monooxygenase family protein	Encodes a YUCCA-like putative flavin monooxygenase, the activation tagging mutant has increased level of IAA, increased auxin response and phenotype of auxin overproduction, rescues erecta mutant phenotype	Flavin-binding monooxygenase family protein;(source:Araport11)
AT5G43900.1	protein_coding	myosin 2	Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner.	myosin 2;(source:Araport11)
AT5G43910.1	protein_coding	pfkB-like carbohydrate kinase family protein		pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT5G52640.1	protein_coding	heat shock protein 90.1	Encodes a cytosolic heat shock protein AtHSP90.1.  AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. The mRNA is cell-to-cell mobile.	heat shock-like protein;(source:Araport11)
AT5G52560.1	protein_coding	UDP-sugar pyrophosphorylase	Encodes a protein with UTP:sugar 1-phosphate uridylyltransferase activity, which has been shown to use a wide range of substrates including glucose-1-P, galactose-1-P, xylose-1-P, arabinose-1-P and glucuronate-1-P. The enzyme was shown to require Mg2+ or Mn2+ for activity. Mutations in USP can lead to a complete loss of male fertility.	UDP-sugar pyrophosphorylase;(source:Araport11)
AT5G52650.1	protein_coding	RNA binding Plectin/S10 domain-containing protein		RNA binding Plectin/S10 domain-containing protein;(source:Araport11)
AT5G52740.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT5G52660.1	protein_coding	Homeodomain-like superfamily protein	Encodes RVE6, a homolog of the circadian rhythm regulator RVE8. rve4 rve6 rve8 triple mutants display an extremely long circadian period, with delayed and reduced expression of evening-phased clock genes.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G52750.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G52570.1	protein_coding	beta-carotene hydroxylase 2	Converts &#946;-carotene to zeaxanthin via cryptoxanthin.	beta-carotene hydroxylase 2;(source:Araport11)
AT5G52580.1	protein_coding	RabGAP/TBC domain-containing protein		RabGAP/TBC domain-containing protein;(source:Araport11)
AT5G52670.1	protein_coding	Copper transport protein family	Member of plant specific copper transport protein family.	Copper transport protein family;(source:Araport11)
AT5G52760.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT5G52680.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT5G52770.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT5G52610.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G52690.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT5G52780.1	protein_coding	Protein of unknown function (DUF3464)		transmembrane protein, putative (DUF3464);(source:Araport11)
AT5G52620.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G52700.1	protein_coding	Copper transport protein family	Member of plant specific copper transport protein family. Expressed in response to Al treatment.	Copper transport protein family;(source:Araport11)
AT5G52790.1	protein_coding	CBS domain-containing protein with a domain of unknown function (DUF21)		CBS domain protein with a domain protein (DUF21);(source:Araport11)
AT5G52630.1	protein_coding	mitochondrial RNAediting factor 1	Encodes a member of the DYW subfamily of pentatricopeptide repeat (PPR) proteins. Loss of MEF1 function affects RNA editing at specific sites in the mitochondrial genome but do not exhibit obvious phenotypes.	mitochondrial RNAediting factor 1;(source:Araport11)
AT5G52710.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT5G52720.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT5G52730.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT5G01670.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT5G01490.1	protein_coding	cation exchanger 4	Encodes a cation/proton antiporter, a member of low affinity calcium antiporter CAX2 family. Involved in root development under metal stress.	cation exchanger 4;(source:Araport11)
AT5G01500.1	protein_coding	thylakoid ATP/ADP carrier	encodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnover The mRNA is cell-to-cell mobile.	thylakoid ATP/ADP carrier;(source:Araport11)
AT5G01580.1	protein_coding	gamma interferon responsive lysosomal thiol (GILT) reductase family protein	thiol reductase in OAS metabolism	gamma interferon responsive lysosomal thiol (GILT) reductase family protein;(source:Araport11)
AT5G01590.1	protein_coding			histone-lysine N-methyltransferase ATXR3-like protein;(source:Araport11)
AT5G01680.1	protein_coding	cation/H+ exchanger 26	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 26;(source:Araport11)
AT5G01510.1	protein_coding	Protein of unknown function, DUF647		root UVB sensitive protein (Protein of unknown function, DUF647);(source:Araport11)
AT5G01520.1	protein_coding	RING/U-box superfamily protein	Encodes a cytosolic RING-type E3 ubiquitin (Ub) ligase that is critical for ABA and high salinity responses during germination.  AtAIRP2 and SDIR1 likely play a combinatory role in ABA signaling and the response to high salt in Arabidopsis.	RING/U-box superfamily protein;(source:Araport11)
AT5G01600.1	protein_coding	ferretin 1	Encodes  a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.	ferretin 1;(source:Araport11)
AT5G01690.1	protein_coding	cation/H+ exchanger 27	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 27;(source:Araport11)
AT5G01530.1	protein_coding	light harvesting complex photosystem II		light harvesting complex photosystem II;(source:Araport11)
AT5G01610.1	protein_coding	Protein of unknown function, DUF538		hypothetical protein (Protein of unknown function, DUF538);(source:Araport11)
AT5G01700.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT5G01540.1	protein_coding	lectin receptor kinase a4.1	Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560).  Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. Positively regulates pattern-triggered immunity.	lectin receptor kinase a4.1;(source:Araport11)
AT5G01620.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 35	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).TBL35 are required only for xylan 3-O-monoacetylation and 2,3-di-O-acetylation. The biochemical phenotype can be observed in tbl35 esk1, double mutant and tbl34 tbl35 esk1 triple mutants.	TRICHOME BIREFRINGENCE-LIKE 35;(source:Araport11)
AT5G01710.1	protein_coding	methyltransferases		methyltransferase;(source:Araport11)
AT5G01550.1	protein_coding	lectin receptor kinase a4.1	Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560).  Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.	lectin receptor kinase a4.1;(source:Araport11)
AT5G01630.1	protein_coding	BRCA2-like B	Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or  both Dmc1 and Dss1(I) in a tripartite complex.	BRCA2-like B;(source:Araport11)
AT5G01720.1	protein_coding	RNI-like superfamily protein	RAE1 is an F-box protein component of a SCF-type E3 ligase complex. It is part of an alumium induced regulatory loop: its activity is induced by STOP1 and it in turn ubiquitinates STOP1 which is then targeted for degradation.	RNI-like superfamily protein;(source:Araport11)
AT5G01560.1	protein_coding	lectin receptor kinase a4.3	Encodes LecRKA4.3, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560).  Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.	lectin receptor kinase a4.3;(source:Araport11)
AT5G01640.1	protein_coding	prenylated RAB acceptor 1.B5		prenylated RAB acceptor 1.B5;(source:Araport11)
AT5G01730.1	protein_coding	SCAR family protein 4	Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein 4;(source:Araport11)
AT5G01570.1	protein_coding			plectin-like protein;(source:Araport11)
AT5G01650.1	protein_coding	Tautomerase/MIF superfamily protein		Tautomerase/MIF superfamily protein;(source:Araport11)
AT5G01660.1	protein_coding			influenza virus NS1A-binding protein;(source:Araport11)
AT5G20510.1	protein_coding	alfin-like 5	Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 5;(source:Araport11)
AT5G20430.1	protein_coding	Mob1/phocein family protein		Mob1/phocein family protein;(source:Araport11)
AT5G20520.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a Bem46-like protein.  WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch).	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G20440.1	protein_coding	Mob1/phocein family protein		Mob1/phocein family protein;(source:Araport11)
AT5G20450.1	protein_coding			myosin;(source:Araport11)
AT5G20540.1	protein_coding	BREVIS RADIX-like 4	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	BREVIS RADIX-like 4;(source:Araport11)
AT5G20460.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G20550.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G20470.1	protein_coding	myosin, putative	Encodes a headless derivative of myosin XI-K, which likely arose from a partial duplication of the XI-K gene and is developmentally regulated.	myosin;(source:Araport11)
AT5G20560.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT5G20480.1	protein_coding	EF-TU receptor	Encodes a predicted leucine-rich repeat receptor kinase (LRR-RLK).  Functions as the receptor for bacterial PAMP (pathogen associated molecular patterns) EF-Tu.	EF-TU receptor;(source:Araport11)
AT5G20570.1	protein_coding	RING-box 1	Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.	RING-box 1;(source:Araport11)
AT5G20490.1	protein_coding	Myosin family protein with Dil domain	Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. Required for fast root hair growth. This gene appears to be expressed at low levels throughout the plant.	myosin family protein with Dil;(source:Araport11)
AT5G20580.1	protein_coding			TMEM192 family protein;(source:Araport11)
AT5G20500.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT5G20590.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 5	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 5;(source:Araport11)
AT5G20600.1	protein_coding			ribosomal RNA processing-like protein;(source:Araport11)
AT5G20420.1	protein_coding	chromatin remodeling 42	Involved in gene silencing. Locus-specific regulator of 24nt-siRNA expression, works together with CLSY1-4 as the master regulators of essentially all Pol-IV-dependent 24nt-siRNAs.	chromatin remodeling 42;(source:Araport11)
AT5G01020.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G01110.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G01030.1	protein_coding	Protein of unknown function (DUF3527)		enolase, putative (DUF3527);(source:Araport11)
AT5G01120.1	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT5G01040.1	protein_coding	laccase 8	putative laccase, knockout mutant showed early flowering	laccase 8;(source:Araport11)
AT5G01210.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G01050.1	protein_coding	Laccase/Diphenol oxidase family protein	putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	Laccase/Diphenol oxidase family protein;(source:Araport11)
AT5G01130.1	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT5G01220.1	protein_coding	sulfoquinovosyldiacylglycerol 2	Encodes a UDP-sulfoquinovose:DAG sulfoquinovosyltransferase that is involved in sulfolipid biosynthesis and whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.	sulfoquinovosyldiacylglycerol 2;(source:Araport11)
AT5G01140.1	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT5G01230.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a tRNA methyltransferase that mediates the 2'-O-ribose methylation of selected tRNA species in the anticodon loop. Mutation of this gene compromises plant immunity against bacteria.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G01060.1	protein_coding	Protein kinase protein with tetratricopeptide repeat domain		kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT5G01150.1	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT5G01070.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G01240.1	protein_coding	like AUXIN RESISTANT 1	Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers.  Required for the establishment of embryonic root cell organization.	like AUXIN RESISTANT 1;(source:Araport11)
AT5G01160.1	protein_coding	RING/U-box superfamily protein	Encodes a member of a core set of mRNA m6A writer proteins and is required for N6-adenosine methylation of mRNA.	RING/U-box superfamily protein;(source:Araport11)
AT5G01080.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT5G01250.1	protein_coding	alpha 1,4-glycosyltransferase family protein		alpha 1,4-glycosyltransferase family protein;(source:Araport11)
AT5G01170.1	protein_coding	Protein of unknown function (DUF740)		hypothetical protein (DUF740);(source:Araport11)
AT5G01090.1	protein_coding	Concanavalin A-like lectin family protein		Concanavalin A-like lectin family protein;(source:Araport11)
AT5G01260.1	protein_coding	Carbohydrate-binding-like fold		Carbohydrate-binding-like fold;(source:Araport11)
AT5G01180.1	protein_coding	peptide transporter  5	Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane.	peptide transporter 5;(source:Araport11)
AT5G01100.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT5G01270.1	protein_coding	carboxyl-terminal domain (ctd) phosphatase-like 2	Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex.  Regulates plant growth, stress and auxin responses.	carboxyl-terminal domain (ctd) phosphatase-like 2;(source:Araport11)
AT5G01190.1	protein_coding	laccase 10	putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	laccase 10;(source:Araport11)
AT5G01200.1	protein_coding	Duplicated homeodomain-like superfamily protein		Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT5G19350.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G19360.1	protein_coding	calcium-dependent protein kinase 34	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 34;(source:Araport11)
AT5G19450.1	protein_coding	calcium-dependent protein kinase 19	calcium-dependent protein kinase (CDPK19) mRNA, complete	calcium-dependent protein kinase 19;(source:Araport11)
AT5G19370.1	protein_coding	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein		rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein;(source:Araport11)
AT5G19460.1	protein_coding	nudix hydrolase homolog 20		nudix hydrolase homolog 20;(source:Araport11)
AT5G19290.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G19380.1	protein_coding	CRT (chloroquine-resistance transporter)-like transporter 1	Encodes one of the CRT-Like transporters (CLT1/AT5G19380, CLT2/AT4G24460, CLT3/AT5G12170). Required for glutathione homeostasis and stress responses.  Mutants lacking these transporters are heavy metal-sensitive, glutathione(GSH)-deficient, and hypersensitive to Phytophthora infection.	CRT (chloroquine-resistance transporter)-like transporter 1;(source:Araport11)
AT5G19300.1	protein_coding			methyltransferase C9orf114 protein;(source:Araport11)
AT5G19470.1	protein_coding	nudix hydrolase homolog 24		nudix hydrolase homolog 24;(source:Araport11)
AT5G19390.1	protein_coding	Rho GTPase activation protein (RhoGAP) with PH domain	Encodes a protein with similarity to REN1, a Rho GTPase activating protein.It is cytoplasmic and plasma membrane associated in interphase, but during mitosis  localizes to the CDZ/CDS in a POK-dependent manner.	Rho GTPase activation protein (RhoGAP) with PH domain-containing protein;(source:Araport11)
AT5G19310.1	protein_coding	Homeotic gene regulator	Encodes CHR23. Overexpression results in increased variability of growth and gene expression.	homeotic protein regulator;(source:Araport11)
AT5G19480.1	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT5G19400.1	protein_coding	Telomerase activating protein Est1	Encodes SMG7, a protein that possesses an evolutionarily conserved EST1 domain and exhibits strong homology to human SMG6 (EST1A) and SMG7 (EST1C) proteins.  SMG7 plays an evolutionarily conserved role in nonsense-mediated RNA decay (NMD). Required for exit from meiosis.  Hypomorphic smg7 alleles render mutant plants sterile by causing an unusual cell-cycle arrest in anaphase II that is characterized by delayed chromosome decondensation and aberrant rearrangement of the meiotic spindle. Disruption of SMG7 causes embryonic lethality.	Telomerase activating protein Est1;(source:Araport11)
AT5G19320.1	protein_coding	RAN GTPase activating protein 2	Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase.	RAN GTPase activating protein 2;(source:Araport11)
AT5G19410.1	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT5G19330.1	protein_coding	ARM repeat protein interacting with  ABF2	Encodes an armadillo repeat protein involved in the abscisic acid response.  The protein interacts with a transcription factor, ABF2, which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements.	ARM repeat protein interacting with ABF2;(source:Araport11)
AT5G19340.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G19420.1	protein_coding	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain		Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT5G19430.1	protein_coding	RING/U-box superfamily protein	Encodes a C3HC4-type RING finger E3 ubiquitin ligase of the RING/U-box superfamily whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.	RING/U-box superfamily protein;(source:Araport11)
AT5G19440.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G35050.1	protein_coding	Domain of unknown function (DUF1985)		hypothetical protein (DUF1985);(source:Araport11)
AT5G35080.1	protein_coding		Encodes a protein involved in the endoplasmic reticulum-associated degradation of glycoproteins.	ER lectin-like protein;(source:Araport11)
AT5G35090.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G35100.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT5G35110.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G35030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30470.1);(source:TAIR10)
AT5G35120.1	protein_coding	MADS-box family protein		MADS-box family protein;(source:Araport11)
AT5G35040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07690.1);(source:TAIR10)
AT5G28840.1	protein_coding	GDP-D-mannose 3',5'-epimerase	Encodes a protein with GDP-D-mannose 3',5'-epimerase activity.  The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose.	GDP-D-mannose 3,5-epimerase;(source:Araport11)
AT5G28850.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT5G28860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01031.1);(source:TAIR10)
AT5G28870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G01980.1);(source:TAIR10)
AT5G28900.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT5G28830.1	protein_coding	calcium-binding EF hand family protein		calcium-binding EF hand family protein;(source:Araport11)
AT5G03990.1	protein_coding			FK506-binding-like protein;(source:Araport11)
AT5G03910.1	protein_coding	ABC2 homolog 12	member of ATH subfamily	ABC2 homolog 12;(source:Araport11)
AT5G04000.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G03920.1	protein_coding			F-box protein;(source:Araport11)
AT5G04010.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G03930.1	protein_coding			F-box protein;(source:Araport11)
AT5G04020.1	protein_coding	calmodulin binding		calmodulin binding protein;(source:Araport11)
AT5G03940.1	protein_coding	chloroplast signal recognition particle 54 kDa subunit	mutant has Yellow first leaves; Chloroplast Signal Recognition Particle Subunit	chloroplast signal recognition particle 54 kDa subunit;(source:Araport11)
AT5G04030.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G03950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40110.1);(source:TAIR10)
AT5G04040.1	protein_coding	Patatin-like phospholipase family protein	Encodes a triacylglycerol lipase that is involved in storage lipid breakdown during seed germination. The mutant plant exhibits a much slower rate of postgerminative growth than the wild type.	Patatin-like phospholipase family protein;(source:Araport11)
AT5G03960.1	protein_coding	IQ-domain 12	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 12;(source:Araport11)
AT5G04050.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)		RNA-directed DNA polymerase (reverse transcriptase);(source:Araport11)
AT5G03970.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G03980.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT5G03800.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem.  Mutations in this locus result in embryo lethality.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G08440.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G08360.1	protein_coding	Protein of unknown function (DUF789)		Stu1, putative (DUF789);(source:Araport11)
AT5G08450.1	protein_coding		Component of histone-deacetylase complexes. Interacts with HDA6 and HDA19 and facilitates histone deacetylation. Several salt-inducible genes are de-repressed in hdc1 mutants. Mutants are hypersensitive to ABA during germination, grow less and flower later than wildtype. HDC1-overexpressing plants display opposite phenotypes.	zinc finger CCCH domain protein;(source:Araport11)
AT5G08280.1	protein_coding	hydroxymethylbilane synthase	Encodes a protein with porphobilinogen deaminase activity. This protein is targeted to the chloroplast. Mutants spontaneously develop chlorotic leaf lesions in the absence of pathogen attack, resembling the phenotype of lesion-mimic mutants. It has been shown to interact with the PPR protein AtECB2 for chloroplast RNA editing.	hydroxymethylbilane synthase;(source:Araport11)
AT5G08370.1	protein_coding	alpha-galactosidase 2	Member of Glycoside Hydrolase Family 27 (GH27)that functions as an &#945;-galactosidase.	alpha-galactosidase 2;(source:Araport11)
AT5G08290.1	protein_coding	mRNA splicing factor, thioredoxin-like U5 snRNP	Encodes Dim1 homolog.	mRNA splicing factor, thioredoxin-like U5 snRNP;(source:Araport11)
AT5G08300.1	protein_coding	Succinyl-CoA ligase, alpha subunit		Succinyl-CoA ligase, alpha subunit;(source:Araport11)
AT5G08380.1	protein_coding	alpha-galactosidase 1		alpha-galactosidase 1;(source:Araport11)
AT5G08310.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G08390.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G08320.1	protein_coding			E2F-associated phosphoprotein;(source:Araport11)
AT5G08400.1	protein_coding	Protein of unknown function (DUF3531)		structural maintenance of chromosomes-like protein, putative (DUF3531);(source:Araport11)
AT5G08330.1	protein_coding	TCP family transcription factor	Circadian oscillator protein which interacts with bZIP63 and regulates a response of the circadian oscillator to sugar. Is not required for the sugar-induced circadian phase advance in the morning; regulates a response of CCA1 to sugars.	TCP family transcription factor;(source:Araport11)
AT5G08410.1	protein_coding	ferredoxin/thioredoxin reductase subunit A (variable subunit) 2		ferredoxin/thioredoxin reductase subunit A (variable subunit) 2;(source:Araport11)
AT5G08340.1	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT5G08420.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT5G08350.1	protein_coding	GRAM domain-containing protein / ABA-responsive protein-related	Mutants have decreased tolerance to cold and oxidative stress. Gene expression induced by drought and ABA.	GRAM domain-containing protein / ABA-responsive protein-like protein;(source:Araport11)
AT5G08430.1	protein_coding	SWIB/MDM2 domain;Plus-3;GYF		SWIB/MDM2 and Plus-3 and GYF domain-containing protein;(source:Araport11)
AT5G15210.1	protein_coding	homeobox protein 30	Encodes ZFHD3, a member of the zinc finger homeodomain transcriptional factor family.	homeobox protein 30;(source:Araport11)
AT5G15130.1	protein_coding	WRKY DNA-binding protein 72	member of WRKY Transcription Factor; Group II-b; contribute to basal immunity. The mRNA is cell-to-cell mobile.	WRKY DNA-binding protein 72;(source:Araport11)
AT5G15220.1	protein_coding	Ribosomal protein L27 family protein		Ribosomal protein L27 family protein;(source:Araport11)
AT5G15140.1	protein_coding	Galactose mutarotase-like superfamily protein		Galactose mutarotase-like superfamily protein;(source:Araport11)
AT5G15310.1	protein_coding	myb domain protein 16	Member of the R2R3 factor gene family.	myb domain protein 16;(source:Araport11)
AT5G15230.1	protein_coding	GAST1 protein homolog 4	Encodes gibberellin-regulated protein GASA4. Promotes GA responses and exhibits redox activity.	GAST1 protein homolog 4;(source:Araport11)
AT5G15150.1	protein_coding	homeobox 3	homeobox-containing gene with an unusual feature:  a leucine zipper motif adjacent to the carboxyl-terminal  of the homeodomain structure.  This gene is expressed  primarily in the cortex of the root and the stem.	homeobox 3;(source:Araport11)
AT5G15320.1	protein_coding			ATP synthase E chain;(source:Araport11)
AT5G15240.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT5G15160.1	protein_coding	BANQUO 2	BNQ2 belongs to a family of  atypical non-DNA binding basic helix-loop-helix (bHLH) proteins that heterodimerize with and negatively regulate bHLH  transcription factors. Directly and negatively regulated by AP3 and PI in petals.Required for appropriate regulation of flowering time.	BANQUO 2;(source:Araport11)
AT5G15330.1	protein_coding	SPX domain gene 4	Encodes a protein with a single SYG1/Pho81/XPR1 (SPX) domain that localizes to both the cytosol and nucleus, acting as a dose-dependent modulator of PHR1-dependent and PHR1-independent phosphate-starvation responses in shoots. SPX4 prevents translocation of PHR1 (AT4G28610) to the nucleus in a dose- and Pi-dependent manner. In contrast to SPX1, SPX4 modulates rather than suppresses phosphate-starvation response (PSR) gene expression.	SPX domain-containing protein 4;(source:Araport11)
AT5G15250.1	protein_coding	FTSH protease 6	Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescence and high-light acclimation.	FTSH protease 6;(source:Araport11)
AT5G15170.1	protein_coding	tyrosyl-DNA phosphodiesterase-related	Tyrosyl-DNA phosphodiesterase 1 involved in DNA repair. TDP1 is involved the repair of Topoisomerase 1 cleavage complexes (tdp1 mutants are camptotecin hypersensitive). tdp1/wss1A double mutants show a synergistic sensitivity after camptothecin treatment. tdp1/mus81 double mutants show an elevated number of dead cells in root meristems after camptothecin treatment (compared to the single mutants).	tyrosyl-DNA phosphodiesterase-like protein;(source:Araport11)
AT5G15340.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G15260.1	protein_coding	Ribosomal protein L34e superfamily protein		ribosomal protein L34e superfamily protein;(source:Araport11)
AT5G15180.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G15350.1	protein_coding	early nodulin-like protein 17		early nodulin-like protein 17;(source:Araport11)
AT5G15270.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT5G15190.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G15360.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G15280.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G15200.1	protein_coding	Ribosomal protein S4		Ribosomal protein S4;(source:Araport11)
AT5G15290.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT5G15380.1	protein_coding	domains rearranged methylase 1	Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences.	domains rearranged methylase 1;(source:Araport11)
AT5G15300.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G26290.1	protein_coding	TRAF-like family protein	MATH domain containing TRAF-like protein. Mutants show defects in both male and female gametophyte development.Potentially regulated by siRNA/miRNA as a number of siRNA's map to the locus as well as miR777.	TRAF-like family protein;(source:Araport11)
AT5G26300.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT5G26310.1	protein_coding	UDP-Glycosyltransferase superfamily protein	UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. A knockdown mutant line (72E3KD) was obtained using RNAi silencing. No reduction in coniferyl alcohol 4-<i>O</i>-glucoside and sinapyl alcohol 4-<i>O</i>-glucoside was detected in this line compared to wildtype, in contrast with the knockdown line constructed for UGT72E2 displayed a twofold reduction in the these phenylpropanoid 4-<i>O</i>-glucosides.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G26320.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT5G26330.1	protein_coding	Cupredoxin superfamily protein		Cupredoxin superfamily protein;(source:Araport11)
AT5G26340.1	protein_coding	Major facilitator superfamily protein	Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.	Major facilitator superfamily protein;(source:Araport11)
AT5G26350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G33393.1);(source:TAIR10)
AT5G26360.1	protein_coding	TCP-1/cpn60 chaperonin family protein		TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT5G26570.1	protein_coding	catalytics;carbohydrate kinases;phosphoglucan, water dikinases	chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position.	chloroplastidic  phosphoglucan, water dikinase (ATGWD3);(source:Araport11)
AT5G02800.1	protein_coding	Protein kinase superfamily protein	Encodes CDL1, a homolog of CDG1. CDL1 positively regulates brassinosteroid signaling and plant growth.	Protein kinase superfamily protein;(source:Araport11)
AT5G02890.1	protein_coding	HXXXD-type acyl-transferase family protein. Overexpression causes a glossy phenotype and defects in cuticular wax deposition. OE plants are blocked in  very long chain fatty acid elongation (C28 and higher).	Encodes a protein with similarity to transferases in plants and fungi.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G02810.1	protein_coding	pseudo-response regulator 7	PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels. Acts as transcriptional repressor of CCA1 and LHY.	pseudo-response regulator 7;(source:Araport11)
AT5G02730.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT5G02900.1	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 13	member of CYP96A	cytochrome P450, family 96, subfamily A, polypeptide 13;(source:Araport11)
AT5G02820.1	protein_coding	Spo11/DNA topoisomerase VI, subunit A protein	Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication	Spo11/DNA topoisomerase VI, subunit A protein;(source:Araport11)
AT5G02740.1	protein_coding	Ribosomal protein S24e family protein		Ribosomal protein S24e family protein;(source:Araport11)
AT5G02910.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G02830.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G02750.1	protein_coding	RING/U-box superfamily protein	Encodes an E3 ligase, SHOOT GRAVITROPISM9.  Modulates the interaction between statoliths and F-Actin in gravity sensing.	RING/U-box superfamily protein;(source:Araport11)
AT5G02920.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G02840.1	protein_coding	LHY/CCA1-like 1	Encodes RVE4, a homolog of the circadian rhythm regulator RVE8. rve4 rve6 rve8 triple mutants display an extremely long circadian period, with delayed and reduced expression of evening-phased clock genes. Involved in heat shock response.	LHY/CCA1-like 1;(source:Araport11)
AT5G02760.1	protein_coding	Protein phosphatase 2C family protein	Encodes a phosphatase that functions in sustaining proper leaf longevity and preventing early senescence by suppressing or perturbing SARK-mediated senescence signal transduction.	Protein phosphatase 2C family protein;(source:Araport11)
AT5G02930.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G02850.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G02770.1	protein_coding		Encodes a conserved eukaryotic protein with homology to the human RNA binding protein CIP29 that localizes to the nucleus.  Mutants accumulate more poly(A) mRNAs in the nucleus, likely resulting from reduced mRNA export activity.	Protein MODIFIER OF SNC1 11;(source:Araport11)
AT5G02940.1	protein_coding	Protein of unknown function (DUF1012)		ion channel POLLUX-like protein, putative (DUF1012);(source:Araport11)
AT5G02860.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G02780.1	protein_coding	glutathione transferase lambda 1	Encodes a member of the lambda family of glutathione transferases. It has thiol transferase activity and self S-glutathionylation activity in vitro.	glutathione transferase lambda 1;(source:Araport11)
AT5G02950.1	protein_coding	Tudor/PWWP/MBT superfamily protein		Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT5G02870.1	protein_coding	Ribosomal protein L4/L1 family		Ribosomal protein L4/L1 family;(source:Araport11)
AT5G02960.1	protein_coding	Ribosomal protein S12/S23 family protein		Ribosomal protein S12/S23 family protein;(source:Araport11)
AT5G02880.1	protein_coding	ubiquitin-protein ligase 4	encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. The mRNA is cell-to-cell mobile.	ubiquitin-protein ligase 4;(source:Araport11)
AT5G02970.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G02790.1	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT5G17530.1	protein_coding	phosphoglucosamine mutase family protein		phosphoglucosamine mutase family protein;(source:Araport11)
AT5G17620.1	protein_coding			nuclear matrix protein;(source:Araport11)
AT5G17540.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G17630.1	protein_coding	Nucleotide/sugar transporter family protein	Phosphate translocator family member which resides in the plastid inner envelope membrane. Retrieves excessive pentose phosphates from the extra-plastidial space and makes them available to the plastids.	Nucleotide/sugar transporter family protein;(source:Araport11)
AT5G17550.1	protein_coding	peroxin 19-2	Encodes the predominant PEX19 peroxin isoform, a cytosolic chaperone for peroxisome membrane proteins (PMPs) that delivers PMPs to the endoplasmic reticulum or peroxisomal membrane. It is predominantly cytosolic, forms dimers, promotes peroxisome function and is essential for viability.  The protein is farnesylated in vivo through the actions of ERA1 and PLP.	peroxin 19-2;(source:Araport11)
AT5G17640.1	protein_coding	Protein of unknown function (DUF1005)	Expression of this gene is induced by abscisic acid and salt stress.	nuclear factor 1 A-type protein (DUF1005);(source:Araport11)
AT5G17560.1	protein_coding	BolA-like family protein		BolA-like family protein;(source:Araport11)
AT5G17650.1	protein_coding	glycine/proline-rich protein		glycine/proline-rich protein;(source:Araport11)
AT5G17570.1	protein_coding	TatD related DNase		TatD related DNase;(source:Araport11)
AT5G17580.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G17590.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT5G17600.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G17610.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G51670.1	protein_coding	Protein of unknown function (DUF668)		hypothetical protein (DUF668);(source:Araport11)
AT5G46510.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G46520.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	VICTR (VARIATION IN COMPOUND TRIGGERED ROOT growth response) encodes a TIR-NB-LRR (for Toll-Interleukin1 Receptor-nucleotide binding-Leucine-rich repeat) protein. VICTR is necessary for DFPM-induced root growth arrest and inhibition of abscisic acid-induced stomatal closing (DFPM is [5-(3,4-dichlorophenyl)furan-2-yl]-piperidine-1-ylmethanethione)(PMID:21620700). DFPM-mediated root growth arrest is accession-specific and depends on EDS1 and PAD4; Col-0 has a functional copy of VICTR. Induction of the VICTR gene by DFPM treatment requires functional VICTR (Col). A close homolog to VICTR, named VICTL (At5g46510) lies in tandem with VICTR. The mRNA is cell-to-cell mobile.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G46530.1	protein_coding	AWPM-19-like family protein		AWPM-19-like family protein;(source:Araport11)
AT5G46450.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G46540.1	protein_coding	P-glycoprotein  7		P-glycoprotein 7;(source:Araport11)
AT5G46460.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G46470.1	protein_coding	disease resistance protein (TIR-NBS-LRR class) family	Encodes RPS6 (RESISTANT TO P. SYRINGAE 6), a member of the TIR-NBS-LRR class resistance protein. The mRNA is cell-to-cell mobile.	disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G46490.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G46500.1	protein_coding			protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein;(source:Araport11)
AT5G61660.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT5G61670.1	protein_coding		Encodes a close homolog of the Cauliflower OR (Orange) protein that is located in the chloroplast of light grown organs but in the nucleus of etiolated cotyledons.  The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation.  Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons.  The AtOR protein interacts directly with the PSY (phytoene synthase) protein and acts as a positive posttranscriptional regulator of its expression, thereby affecting carotenoid biosynthesis.	orange protein;(source:Araport11)
AT5G61500.1	protein_coding	autophagy 3 (APG3)	autophagy-related (ATG) gene	autophagy 3 (APG3);(source:Araport11)
AT5G61580.1	protein_coding	phosphofructokinase 4		phosphofructokinase 4;(source:Araport11)
AT5G61590.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes an AP2/ERF-type transcription factor that is preferentially expressed in the epidermis and induced by darkness and negatively regulates cuticular wax biosynthesis.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G61510.1	protein_coding	GroES-like zinc-binding alcohol dehydrogenase family protein		GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT5G61680.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G61600.1	protein_coding	ethylene response factor 104	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	ethylene response factor 104;(source:Araport11)
AT5G61520.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G61690.1	protein_coding	ABC2 homolog 15		ABC2 homolog 15;(source:Araport11)
AT5G61610.1	protein_coding	Oleosin family protein		Oleosin family protein;(source:Araport11)
AT5G61530.1	protein_coding	small G protein family protein / RhoGAP family protein		small G protein family protein / RhoGAP family protein;(source:Araport11)
AT5G61700.1	protein_coding	ABC2 homolog 16		ABC2 homolog 16;(source:Araport11)
AT5G61620.1	protein_coding	myb-like transcription factor family protein		myb-like transcription factor family protein;(source:Araport11)
AT5G61540.1	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein		N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT5G61630.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G61550.1	protein_coding	U-box domain-containing protein kinase family protein		U-box domain-containing protein kinase family protein;(source:Araport11)
AT5G61560.1	protein_coding	U-box domain-containing protein kinase family protein		U-box domain-containing protein kinase family protein;(source:Araport11)
AT5G61640.1	protein_coding	peptidemethionine sulfoxide reductase 1	ubiquitous enzyme that repairs oxidatively damaged proteins	peptidemethionine sulfoxide reductase 1;(source:Araport11)
AT5G61570.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G61650.1	protein_coding	CYCLIN P4;2	The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei.	CYCLIN P4;(source:Araport11)
AT5G37740.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G37650.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein (DUF577);(source:Araport11)
AT5G37660.1	protein_coding	plasmodesmata-located protein 7	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	plasmodesmata-located protein 7;(source:Araport11)
AT5G37750.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G37670.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT5G37590.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G37680.1	protein_coding	ADP-ribosylation factor-like A1A	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARL GTPases.	ADP-ribosylation factor-like A1A;(source:Araport11)
AT5G37600.1	protein_coding	glutamine synthase clone R1	encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	hypothetical protein;(source:Araport11)
AT5G37690.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT5G37610.1	protein_coding	Eukaryotic porin family protein		Eukaryotic porin family protein;(source:Araport11)
AT5G37620.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G37630.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G37710.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G37640.1	protein_coding	ubiquitin 9	polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements.	ubiquitin 9;(source:Araport11)
AT5G37720.1	protein_coding		Encodes a member of a family of proteins involved in export of RNAs from the nucleus and transcriptional coactivation.	ALWAYS EARLY 4;(source:Araport11)
AT5G37730.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G24160.1	protein_coding	squalene monoxygenase 6		squalene monooxygenase 6;(source:Araport11)
AT5G24170.1	protein_coding	Got1/Sft2-like vescicle transport protein family		Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT5G24180.1	protein_coding	Lipase class 3-related protein		Lipase class 3-related protein;(source:Araport11)
AT5G24190.1	protein_coding	Lipase class 3-related protein		Lipase class 3-related protein;(source:Araport11)
AT5G24200.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G39840.1	protein_coding	ATP-dependent RNA helicase, mitochondrial, putative		ATP-dependent RNA helicase;(source:Araport11)
AT5G55050.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates. The mRNA is cell-to-cell mobile.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G47110.1	protein_coding	Chlorophyll A-B binding family protein	Encodes a light-harvesting-like protein that is involved in chlorophyll and tocopherol biosynthesis anchoring geranylgeranyl reductase in the thylakoid membrane.	Chlorophyll A-B binding family protein;(source:Araport11)
AT5G47120.1	protein_coding	BAX inhibitor 1	Encodes BI-1, a homolog of mammalian Bax inhibitor 1.  Functions as an attenuator of biotic and abiotic types of cell death.  Bax-induced cell death can be downregulated by ectopically expressing AtBI in planta. The mRNA is cell-to-cell mobile.	BAX inhibitor 1;(source:Araport11)
AT5G47130.1	protein_coding	Bax inhibitor-1 family protein		Bax inhibitor-1 family protein;(source:Araport11)
AT5G47140.1	protein_coding	GATA transcription factor 27	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 27;(source:Araport11)
AT5G47150.1	protein_coding	YDG/SRA domain-containing protein		YDG/SRA domain-containing protein;(source:Araport11)
AT5G47090.1	protein_coding			coiled-coil protein;(source:Araport11)
AT5G47100.1	protein_coding	calcineurin B-like protein 9	member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins. CBL9 interacts with and targets CIPK23 to the plasma membrane in vivo.	calcineurin B-like protein 9;(source:Araport11)
AT5G65910.1	protein_coding	BSD domain-containing protein		BSD domain-containing protein;(source:Araport11)
AT5G65920.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G65930.1	protein_coding	kinesin-like calmodulin-binding protein (ZWICHEL)	encodes a novel member of the kinesin superfamily of motor proteins. recessive mutations have reduced number of trichome branches.	kinesin-like calmodulin-binding protein (ZWICHEL);(source:Araport11)
AT5G65940.1	protein_coding	beta-hydroxyisobutyryl-CoA hydrolase 1	hydrolyzes beta-hydroxyisobutyryl-CoA	beta-hydroxyisobutyryl-CoA hydrolase 1;(source:Araport11)
AT5G65950.1	protein_coding		TRAPPIII complex protein which regulates TGN integrity, by altered TGN/EE association of several residents, including SYNTAXIN OF PLANTS 61 (SYP61), and altered vesicle morphology. Involved in regulation of endosomal function and salt stress response.	trafficking protein particle complex subunit-like protein;(source:Araport11)
AT5G65880.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G65890.1	protein_coding	ACT domain repeat 1	Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques.	ACT domain repeat 1;(source:Araport11)
AT5G65900.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT5G44570.1	protein_coding		Encodes a PPR protein involved in mitochondrial functioning. Mutants suppress cell wall defects caused by C17 chemical inhibitor. Mutants are defective in cytochrome c maturation and activation of mitochondrial retrograde signalling.	transmembrane protein;(source:Araport11)
AT5G44660.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G44580.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G44670.1	protein_coding	Domain of unknown function (DUF23)		glycosyltransferase family protein (DUF23);(source:Araport11)
AT5G44590.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G44600.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G44610.1	protein_coding	microtubule-associated protein 18	Encodes a protein with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization. Associates to the plasma membrane and interacts with calmodulin and phosphatidylinositol phosphates, indicating an involvement in cellular signal transduction. Expression is enhanced by abiotic and hormonal factors. Induced during senescence.Interacts with Ca2+/calmodulin complex, phosphatidylinositol phosphates, and free Ca2+.	microtubule-associated protein 18;(source:Araport11)
AT5G44620.1	protein_coding	cytochrome P450, family 706, subfamily A, polypeptide 3	member of CYP706A	cytochrome P450, family 706, subfamily A, polypeptide 3;(source:Araport11)
AT5G44630.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein	Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend.  Strongly expressed in intrafloral nectaries.	Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT5G44640.1	protein_coding	beta glucosidase 13		beta glucosidase 13;(source:Araport11)
AT5G44650.1	protein_coding		Encodes a nucleus-encoded thylakoid protein, cooperates with the plastid-encoded Ycf3 protein in photosystem i assembly. Also induces tolerance to multiple environmental stresses and reduces photooxidative damage.	death domain associated protein;(source:Araport11)
AT5G38830.1	protein_coding	Cysteinyl-tRNA synthetase, class Ia family protein		Cysteinyl-tRNA synthetase, class Ia family protein;(source:Araport11)
AT5G38920.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G38840.1	protein_coding	SMAD/FHA domain-containing protein 		SMAD/FHA domain-containing protein;(source:Araport11)
AT5G38850.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class)		Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G38930.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G38860.1	protein_coding	BES1-interacting Myc-like protein 3	Encodes BES1-INTERACTING MYC-LIKE 3 (BIM3), a PAR1 (PHYTOCHROME RAPIDLY REGULATED 1)-interacting protein that positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	BES1-interacting Myc-like protein 3;(source:Araport11)
AT5G38940.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G38950.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G38870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G38960.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G38880.1	protein_coding			HAUS augmin-like complex subunit;(source:Araport11)
AT5G38970.1	protein_coding	brassinosteroid-6-oxidase 1	Encodes a polypeptide involved in the C-6 oxidation of brassinosteroids. Heterologous expression of the protein in yeast conferred the ability to catalyze multiple reactions in which the C-6 position of 6-deoxocastasterone, 6-deoxotyphasterol, 3-dehydro-6-deoxoteasterone and 6-deoxoteasterone are oxidized.	brassinosteroid-6-oxidase 1;(source:Araport11)
AT5G38890.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT5G38980.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G38900.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT5G38990.1	protein_coding	Malectin/receptor-like protein kinase family protein	Involved in growth adaptation upon exposure to metal ions. Contributes together with the other MDS genes to the complex network of CrRLK1Ls that positively and negatively affect growth.	Malectin/receptor-like protein kinase family protein;(source:Araport11)
AT5G38910.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G45900.1	protein_coding	ThiF family protein	Component of autophagy conjugation pathway. Required for proper senescence. Contributes to plant basal immunity towards fungal infection.	ThiF family protein;(source:Araport11)
AT5G45910.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G45920.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT5G45840.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes a leucine-rich-repeat RLK that is localized to the plasma membrane of pollen tubes and functions with MIK1/2 as the male receptor of the pollen tube chemo-attractant LURE1.MDIS1 forms a complex with MIK1/2 and binds LURE1.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G45930.1	protein_coding	magnesium chelatase i2	encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis.    Has ATPase activity, regulated by TRX-f. Involved in the assembly of the Mg chelatase complex.	magnesium chelatase i2;(source:Araport11)
AT5G45850.1	protein_coding	Protein of unknown function (DUF688)		hypothetical protein (DUF688);(source:Araport11)
AT5G45940.1	protein_coding	nudix hydrolase homolog 11	Encodes a CoA pyrophosphatase, also has ppGpp pyrophosphohydrolase and exhibits minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl, flower, and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette.	nudix hydrolase homolog 11;(source:Araport11)
AT5G45860.1	protein_coding	PYR1-like 11	Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.	PYR1-like 11;(source:Araport11)
AT5G45950.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G45870.1	protein_coding	PYR1-like 12	Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.	PYR1-like 12;(source:Araport11)
AT5G45960.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G45880.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G45890.1	protein_coding	senescence-associated gene 12	Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH.	senescence-associated gene 12;(source:Araport11)
AT5G48660.1	protein_coding	B-cell receptor-associated protein 31-like 		B-cell receptor-associated protein 31-like protein;(source:Araport11)
AT5G48580.1	protein_coding	FK506- and rapamycin-binding protein 15 kD-2	Endoplasmic reticulum (ER) localized immunophilin protein which possesses PPIase activity. Positively regulates plant immunity in response to Phytophthora infection.  Host target of PcAvr3a12 during early P. capsici infection. Involved in ER stress sensing and is required for ER stress-mediated plant immunity.	FK506- and rapamycin-binding protein 15 kD-2;(source:Araport11)
AT5G48670.1	protein_coding	AGAMOUS-like 80	AGL80 is a member of the MADS box family of genes. AGL80 functions as a transcription factor within the central cell gene regulatory network and controls the expression of downstream genes required for central cell development and function.	AGAMOUS-like 80;(source:Araport11)
AT5G48590.1	protein_coding	Protein of unknown function (DUF760)		phosphoserine aminotransferase, putative (DUF760);(source:Araport11)
AT5G48680.1	protein_coding	Sterile alpha motif (SAM) domain-containing protein		Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT5G48600.1	protein_coding	structural maintenance of chromosome 3	member of SMC subfamily	structural maintenance of chromosome 3;(source:Araport11)
AT5G48610.1	protein_coding			myb-like protein X;(source:Araport11)
AT5G48620.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G48630.1	protein_coding	Cyclin family protein		Cyclin family protein;(source:Araport11)
AT5G48640.1	protein_coding	Cyclin family protein		Cyclin family protein;(source:Araport11)
AT5G48570.1	protein_coding	FKBP-type peptidyl-prolyl cis-trans isomerase family protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	FKBP-type peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT5G48650.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain	Negative regulator of defense response to Pseudomonas syringae pv. tomato through altered stomatal and apoplastic immunity.	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT5G37030.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G37020.1	protein_coding	auxin response factor 8	Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Expression of ARF8 is controlled by miR167.	auxin response factor 8;(source:Araport11)
AT5G42570.1	protein_coding	B-cell receptor-associated 31-like		B-cell receptor-associated 31-like protein;(source:Araport11)
AT5G42580.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 12	a member of the cytochrome P450 family	cytochrome P450, family 705, subfamily A, polypeptide 12;(source:Araport11)
AT5G42590.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 16	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 16;(source:Araport11)
AT5G47960.1	protein_coding	RAB GTPase homolog A4C	Encodes a small molecular weight g-protein.	RAB GTPase homolog A4C;(source:Araport11)
AT5G47970.1	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT5G47990.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 5	Encodes an endomembrane system-expressed member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings and show altered gravitropic responses.	cytochrome P450, family 705, subfamily A, polypeptide 5;(source:Araport11)
AT5G47950.1	protein_coding	HXXXD-type acyl-transferase family protein	BIA2 is a putative HXXXD-type BAHD acyltransferase. Overexpression results in a BR deficient phenotype and is dependent on a functional HXXXD motif. BIA2 may function in BR homeostasis by regulating the pool of  bioactive BR.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G06080.1	protein_coding	LOB domain-containing protein 33		LOB domain-containing protein 33;(source:Araport11)
AT5G06090.1	protein_coding	glycerol-3-phosphate acyltransferase 7	putative sn-glycerol-3-phosphate 2-O-acyltransferase	glycerol-3-phosphate acyltransferase 7;(source:Araport11)
AT5G06100.1	protein_coding	myb domain protein 33	Encodes a member of the myb family of transcription factors (MYB33), contains Pfam profile: PF00249 myb DNA-binding domain. Double mutants with MYB65 are male sterile- anthers are small, pollen development is defective. Spatial expression appears to be under the control of miR159, contains a target site for this micro RNA. A highly conserved RNA secondary structure abuts the miR159 binding site which facilitates its regulation by miR159. When the target site is mutated, expression is detected in leaves, roots, anther filament, pistil. The expression of a translational fusion is specific to anther locules in contrast to constructs lacking the miR159 target site. Phenotype is conditional and can be restored by lower temperature or higher light intensity.	myb domain protein 33;(source:Araport11)
AT5G06110.1	protein_coding	DnaJ domain ;Myb-like DNA-binding domain	Encodes a ZRF1 chromatin regulator. Functions in regulating plant growth and development.	DnaJ and myb-like DNA-binding domain-containing protein;(source:Araport11)
AT5G06120.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G06130.1	protein_coding	chaperone protein dnaJ-related	Encodes an OR(orange)-like protein that interacts directly with the PSY (phytoene synthase) protein and acts as a positive posttranscriptional regulator of its expression, thereby affecting carotenoid biosynthesis.	chaperone protein dnaJ-like protein;(source:Araport11)
AT5G06140.1	protein_coding	sorting nexin 1	Homolog of yeast retromer subunit VPS5.  Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.	sorting nexin 1;(source:Araport11)
AT5G24430.1	protein_coding	Calcium-dependent protein kinase (CDPK) family protein		Calcium-dependent protein kinase (CDPK) family protein;(source:Araport11)
AT5G24350.1	protein_coding		Member of MAG2 complex on the ER that is responsible for efficient transport of seed storage proteins, functions in protein transport between the ER and Golgi apparatus, contain a Zeste?White 10 (ZW10) domain and a Sec39 domain. Required for proper maturation of seed storage proteins.	neuroblastoma-amplified sequence protein;(source:Araport11)
AT5G24360.1	protein_coding	inositol requiring 1-1	IRE1A and IRE1B catalyze bZIP60 mRNA splicing, producing the active bZIP60 transcription factor.	inositol requiring 1-1;(source:Araport11)
AT5G24370.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G24380.1	protein_coding	YELLOW STRIPE like 2	closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1	YELLOW STRIPE like 2;(source:Araport11)
AT5G24390.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT5G24400.1	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein	Encodes a protein with 6-phosphoglucunolactonase activity that localizes to the chloroplasts and the peroxisome. However, mutant phenotypes observed in pgl3 mutant plants can be complemented with a chloroplast-targeted version of the protein. PGL3 likely functions in the oxidative branch of the pentose phosphate pathway. pgl3 mutant phenotypes suggest that it is important in pathogen defense and maintenance of cellular redox homeostasis.	NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT5G24410.1	protein_coding	6-phosphogluconolactonase 4	Encodes a cytosolic 6-phosphogluconolactonase (PGL) thought to be involved in the oxidative pentose-phosphate pathway (OPPP).	6-phosphogluconolactonase 4;(source:Araport11)
AT5G24420.1	protein_coding	6-phosphogluconolactonase 5	Encodes a cytosolic 6-phosphogluconolactonase (PGL) thought to be involved in the oxidative pentose-phosphate pathway (OPPP).	6-phosphogluconolactonase 5;(source:Araport11)
AT5G41830.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT5G41840.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G41760.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT5G41850.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G41770.1	protein_coding	crooked neck protein, putative / cell cycle protein, putative		crooked neck protein, putative / cell cycle protein;(source:Araport11)
AT5G41860.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G41780.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT5G41870.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G41790.1	protein_coding	COP1-interactive protein 1	encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light. The mRNA is cell-to-cell mobile.	COP1-interactive protein 1;(source:Araport11)
AT5G41880.1	protein_coding	DNA primases;DNA primases		DNA primase POLA3;(source:Araport11)
AT5G41800.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT5G41890.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G41810.1	protein_coding			Avr9/Cf-9 rapidly elicited protein;(source:Araport11)
AT5G41900.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G41820.1	protein_coding	RAB geranylgeranyl transferase alpha subunit 2		RAB geranylgeranyl transferase alpha subunit 2;(source:Araport11)
AT5G51620.1	protein_coding	Uncharacterised protein family (UPF0172)		Uncharacterized protein family (UPF0172);(source:Araport11)
AT5G51540.1	protein_coding	Zincin-like metalloproteases family protein	Mitochondrial ATP-independent protease	Zincin-like metalloproteases family protein;(source:Araport11)
AT5G51630.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G51640.1	protein_coding	Plant protein of unknown function (DUF828)	Encodes leaf-senescence-related protein. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT5G51550.1	protein_coding	EXORDIUM like 3		EXORDIUM like 3;(source:Araport11)
AT5G51560.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G51650.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G51480.1	protein_coding	SKU5  similar 2	GPI anchored protein, highly expressed in reproductive tissues.	SKU5 similar 2;(source:Araport11)
AT5G51490.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT5G51570.1	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT5G51660.1	protein_coding	cleavage and polyadenylation specificity factor 160		cleavage and polyadenylation specificity factor 160;(source:Araport11)
AT5G51500.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT5G51580.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G51510.1	protein_coding			jagunal-like protein;(source:Araport11)
AT5G51590.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT5G51520.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G51600.1	protein_coding	Microtubule associated protein (MAP65/ASE1) family protein	Mutant has defective roots. Essential for giant cell ontogenesis. Role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs.	Microtubule associated protein (MAP65/ASE1) family protein;(source:Araport11)
AT5G51530.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT5G51610.1	protein_coding	Ribosomal protein L11 family protein		Ribosomal protein L11 family protein;(source:Araport11)
AT5G45110.1	protein_coding	NPR1-like protein 3	Encodes NPR3, a paralog of NPR1.  Involved in negative regulation of defense responses against bacterial and oomycete pathogens.  npr3 mutants has elevated level of PR1 expression.  Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays. NPR3 and NPR4 are receptors for the immune signal salicylic acid. The mRNA is cell-to-cell mobile.	NPR1-like protein 3;(source:Araport11)
AT5G45120.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G45130.1	protein_coding	RAB homolog 1	small GTP binding protein The mRNA is cell-to-cell mobile.	Ras small GTP-binding family protein;(source:Araport11)
AT5G45070.1	protein_coding	phloem protein 2-A8		phloem protein 2-A8;(source:Araport11)
AT5G45080.1	protein_coding	phloem protein 2-A6		phloem protein 2-A6;(source:Araport11)
AT5G45090.1	protein_coding	phloem protein 2-A7		phloem protein 2-A7;(source:Araport11)
AT5G45100.1	protein_coding	SBP (S-ribonuclease binding protein) family protein	Encodes one of the BRGs (BOI-related gene) involved in resistance to Botrytis cinerea.	SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT5G59060.1	protein_coding			reverse transcriptase family protein;(source:Araport11)
AT5G59070.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G59080.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G59090.1	protein_coding	subtilase 4.12		subtilase 4.12;(source:Araport11)
AT5G59100.1	protein_coding	Subtilisin-like serine endopeptidase family protein		Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT5G59040.1	protein_coding	copper transporter 3	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	copper transporter 3;(source:Araport11)
AT5G59050.1	protein_coding			G patch domain protein;(source:Araport11)
AT5G45140.1	protein_coding	nuclear RNA polymerase C2	Encodes a subunit of RNA polymerase III (aka RNA polymerase C).	nuclear RNA polymerase C2;(source:Araport11)
AT5G45230.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G45150.1	protein_coding	RNAse THREE-like protein 3		RNAse THREE-like protein 3;(source:Araport11)
AT5G45240.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class)		Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G45160.1	protein_coding	Root hair defective 3 GTP-binding protein (RHD3)		Root hair defective 3 GTP-binding protein (RHD3);(source:Araport11)
AT5G45170.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G45180.1	protein_coding	Flavin-binding monooxygenase family protein		Flavin-binding monooxygenase family protein;(source:Araport11)
AT5G45190.1	protein_coding	Cyclin family protein	Encodes a cyclin T partner CYCT1;5.  Plays important roles in infection with Cauliflower mosaic virus (CaMV).	Cyclin family protein;(source:Araport11)
AT5G45200.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G45210.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G45220.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G54150.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G54160.1	protein_coding	O-methyltransferase 1	A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay.  AtOMT1 (At5g54160) encodes a flavonol 3?-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3?-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase The mRNA is cell-to-cell mobile.	O-methyltransferase 1;(source:Araport11)
AT5G54170.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT5G54180.1	protein_coding	plastid transcriptionally active 15		plastid transcriptionally active 15;(source:Araport11)
AT5G54190.1	protein_coding	protochlorophyllide oxidoreductase A	light-dependent NADPH:protochlorophyllide oxidoreductase A	protochlorophyllide oxidoreductase A;(source:Araport11)
AT5G54200.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G05470.1	protein_coding	eukaryotic translation initiation factor 2 alpha subunit	Encodes an eIF2alpha homolog that can be phosphorylated by GCN2 in vitro.	eukaryotic translation initiation factor 2 alpha subunit;(source:Araport11)
AT5G05390.1	protein_coding	laccase 12	putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	laccase 12;(source:Araport11)
AT5G05400.1	protein_coding	LRR and NB-ARC domains-containing disease resistance protein		LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT5G05310.1	protein_coding	TLC ATP/ADP transporter		TLC ATP/ADP transporter;(source:Araport11)
AT5G05320.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT5G05410.1	protein_coding	DRE-binding protein 2A	Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress).  Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B.  The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress–inducible genes. The mRNA is cell-to-cell mobile.	DRE-binding protein 2A;(source:Araport11)
AT5G05330.1	protein_coding	HMG-box (high mobility group) DNA-binding family protein	Encodes a protein with a putative HMG-box domain.  The high-mobility group (HMG) proteins are chromatin-associated proteins that act as architectural factors in various nucleoprotein structures, which regulate DNA-dependent processes such as transcription and recombination.  Expression of this gene was not detected according to Grasser et al. (J. Mol. Biol. 2006:358, 654-664).	HMG-box (high mobility group) DNA-binding family protein;(source:Araport11)
AT5G05420.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein		FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT5G05260.1	protein_coding	cytochrome p450 79a2	Encodes cytochrome P450 CYP79A2.	phenylalanine N-monooxygenase-like protein;(source:Araport11)
AT5G05340.1	protein_coding	Peroxidase superfamily protein	Encodes a protein with sequence similarity to peroxidases that is involved in lignin biosynthesis. Loss of function mutations show abnormal development of xylem fibers and reduced levels of lignin biosynthetic enxymes.	Peroxidase superfamily protein;(source:Araport11)
AT5G05430.1	protein_coding	RNA-binding protein		RNA-binding protein;(source:Araport11)
AT5G05270.1	protein_coding	Chalcone-flavanone isomerase family protein		Chalcone-flavanone isomerase family protein;(source:Araport11)
AT5G05350.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT5G05440.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein	Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.	Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT5G05280.1	protein_coding	RING/U-box superfamily protein	Encodes a RING-finger E3 ligase protein that controls anther dehiscence by positively regulating the expression of DAD1 in the jasmonic acid biosynthesis pathway.	RING/U-box superfamily protein;(source:Araport11)
AT5G05360.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G05450.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G05290.1	protein_coding	expansin A2	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A2;(source:Araport11)
AT5G05370.1	protein_coding	Cytochrome b-c1 complex, subunit 8 protein		Cytochrome b-c1 complex, subunit 8 protein;(source:Araport11)
AT5G05460.1	protein_coding	Glycosyl hydrolase family 85 	Encodes a cytosolic beta-endo-N-acetyglucosaminidase (ENGase). ENGases N-glycans cleave the O-glycosidic linkage between the two GlcNAc residues of the N-glycan core structure and thus generate a protein with a single GlcNAc attached to asparagine.	Glycosyl hydrolase family 85;(source:Araport11)
AT5G05300.1	protein_coding		IDL6 peptide is induced in response to Pathogen-Associated Molecular Patterns (PAMPs). Overexpression of IDL6  results in increased susceptibility to pathogens.	hypothetical protein;(source:Araport11)
AT5G05380.1	protein_coding	prenylated RAB acceptor 1.B3		prenylated RAB acceptor 1.B3;(source:Araport11)
AT5G05960.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G05970.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G05980.1	protein_coding	DHFS-FPGS homolog B	Encodes one of the three folylpolyglutamate synthetase isoforms (FPGSs): FPGS1 (At5g05980, plastidic), FPGS2 (At3g10160, mitochondrial) and FPGS3 (At3g55630, cytosolic).	DHFS-FPGS homolog B;(source:Araport11)
AT5G05990.1	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT5G05910.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G06000.1	protein_coding	eukaryotic translation initiation factor 3G2	One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3).	eukaryotic translation initiation factor 3G2;(source:Araport11)
AT5G05920.1	protein_coding	deoxyhypusine synthase	Encodes a deoxyhypusine synthase.	deoxyhypusine synthase;(source:Araport11)
AT5G06010.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G05930.1	protein_coding	guanylyl cyclase 1		guanylyl cyclase 1;(source:Araport11)
AT5G06020.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G05940.1	protein_coding	ROP guanine nucleotide exchange factor 5	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	ROP guanine nucleotide exchange factor 5;(source:Araport11)
AT5G05950.1	protein_coding	maternal effect embryo arrest 60		maternal effect embryo arrest 60;(source:Araport11)
AT5G06030.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G06040.1	protein_coding	self-incompatibility protein-related		self-incompatibility protein-like protein;(source:Araport11)
AT5G06050.1	protein_coding	Putative methyltransferase family protein		Putative methyltransferase family protein;(source:Araport11)
AT5G37960.1	protein_coding	GroES-like family protein		GroES-like family protein;(source:Araport11)
AT5G37880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18420.1);(source:TAIR10)
AT5G37970.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein;(source:Araport11)
AT5G37890.1	protein_coding	Protein with RING/U-box and TRAF-like domains	Encodes an E3 protein ligase (based on a self-ubiquitination in vitro assay).	Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT5G37980.1	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G37900.1	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT5G37990.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein;(source:Araport11)
AT5G37910.1	protein_coding	Protein with RING/U-box and TRAF-like domains		Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT5G37920.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein (DUF577);(source:Araport11)
AT5G37930.1	protein_coding	Protein with RING/U-box and TRAF-like domains		Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT5G37940.1	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G37870.1	protein_coding	Protein with RING/U-box and TRAF-like domains		Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT5G37950.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G24600.1	protein_coding	Protein of unknown function, DUF599		TRP-like ion channel protein (Protein of unknown function, DUF599);(source:Araport11)
AT5G24610.1	protein_coding			cyclic AMP-responsive element-binding protein;(source:Araport11)
AT5G24530.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew. The mRNA is cell-to-cell mobile.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G24620.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT5G24540.1	protein_coding	beta glucosidase 31		beta glucosidase 31;(source:Araport11)
AT5G24630.1	protein_coding	double-stranded DNA binding	This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	double-stranded DNA binding protein;(source:Araport11)
AT5G24550.1	protein_coding	beta glucosidase 32		beta glucosidase 32;(source:Araport11)
AT5G24640.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G24560.1	protein_coding	phloem protein 2-B12		phloem protein 2-B12;(source:Araport11)
AT5G24650.1	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	HP30/Tric1 is a component of the mitochondrial protein translocation complex and is involved in tRNA transport along with HP30-2/Tric2.It interacts with several members of the TOM complex such as TOM40 and this interaction is mediated by the SAM domain.	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT5G24570.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G24580.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G62430.1	protein_coding	cycling DOF factor 1	Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time.  Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon. CDF1 binds to the TOPLESS co-repressor protein through an N-terminal motif which is conserved across CDF-like proteins throughout land-plants. This interaction is important for the repression of CO and FT genes during the morning. Loss of CDF1 dependent repression through omission of TPL coordinating residues or through the loss of TPL function in phloem companion cells results in early flowering due to an up regulation of FT.	cycling DOF factor 1;(source:Araport11)
AT5G62520.1	protein_coding	similar to RCD one 5	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.	similar to RCD one 5;(source:Araport11)
AT5G62440.1	protein_coding	Protein of unknown function (DUF3223)	Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.	EMB514 (DUF3223);(source:Araport11)
AT5G62530.1	protein_coding	aldehyde dehydrogenase 12A1	Encodes mitochondrial Delta-pyrroline-5-  carboxylate dehydrogenase. Involved in the catabolism of proline to glutamate. Involved in protection from proline toxicity. Induced at pathogen infection sites. P5CDH and SRO5 (an overlapping gene in the sense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.	aldehyde dehydrogenase 12A1;(source:Araport11)
AT5G62540.1	protein_coding	ubiquitin-conjugating enzyme 3	Encodes a protein predicted to be an E2 ubiquitin conjugating enzyme. It appears homologous to the RAD6 protein in yeast implicated in histone ubiquitination, but, UBC3 has not been experimentally associated with this process.	ubiquitin-conjugating enzyme 3;(source:Araport11)
AT5G62460.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein	RZFP is a zinc finger protein involved in mediating abiotic stress tolerance.	RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G62550.1	protein_coding			microtubule-associated futsch-like protein;(source:Araport11)
AT5G62470.1	protein_coding	myb domain protein 96	Encodes a R2R3 type Myb transcription factor whose expression is strongly induced by abscisic acid. Mediates abscisic acid signaling during drought stress response.	myb domain protein 96;(source:Araport11)
AT5G62560.1	protein_coding	RING/U-box superfamily protein with ARM repeat domain		RING/U-box superfamily protein with ARM repeat domain-containing protein;(source:Araport11)
AT5G62480.1	protein_coding	glutathione S-transferase tau 9	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase tau 9;(source:Araport11)
AT5G62570.1	protein_coding	Calmodulin binding protein-like		Calmodulin binding protein-like protein;(source:Araport11)
AT5G62490.1	protein_coding	HVA22 homologue B	Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible.	HVA22 homologue B;(source:Araport11)
AT5G62580.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G62500.1	protein_coding	end binding protein 1B	Encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.	end binding protein 1B;(source:Araport11)
AT5G62600.1	protein_coding	ARM repeat superfamily protein	Encodes a nuclear importer of serine-arginine rich (SR) proteins and is involved in the regulation of splicing of R genes by regulating the import of the SR proteins into the nucleus.	ARM repeat superfamily protein;(source:Araport11)
AT5G62510.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G53210.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana.  Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions.  SPCH is a substrate of a kinase MPK3 and MPK6. Its transcript levels change after inducing MUTE expression in a mute background.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G53220.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G53300.1	protein_coding	ubiquitin-conjugating enzyme 10	Encodes a ubiquitin conjugating enzyme.	ubiquitin-conjugating enzyme 10;(source:Araport11)
AT5G53230.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G53310.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT5G53240.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G53320.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G53250.1	protein_coding	arabinogalactan protein 22		arabinogalactan protein 22;(source:Araport11)
AT5G53330.1	protein_coding	Ubiquitin-associated/translation elongation factor EF1B protein		Ubiquitin-associated/translation elongation factor EF1B protein;(source:Araport11)
AT5G53260.1	protein_coding	Seed maturation protein		Seed maturation protein;(source:Araport11)
AT5G53340.1	protein_coding	Galactosyltransferase family protein	Encodes a hydroxyproline O-galactosyltransferase.	Galactosyltransferase family protein;(source:Araport11)
AT5G53270.1	protein_coding	Seed maturation protein		Seed maturation protein;(source:Araport11)
AT5G53350.1	protein_coding	CLP protease regulatory subunit X	CLP protease regulatory subunit CLPX mRNA, nuclear gene	CLP protease regulatory subunit X;(source:Araport11)
AT5G53280.1	protein_coding	plastid division1	An integral outer envelope membrane protein (as its homolog PDV2), component of the plastid division machinery. Similar to ARC5, PDV1 localized to a discontinuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site. Topological analysis showed that the large N-terminal region of PDV1 upstream of the transmembrane helix bearing a putative coiled-coil domain is exposed to the cytosol. Mutation of the conserved PDV1 C-terminal Gly residue did not block PDV1 insertion into the outer envelope membrane but did abolish its localization to the division site. The mRNA is cell-to-cell mobile.	plastid division1;(source:Araport11)
AT5G53360.1	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT5G53290.1	protein_coding	cytokinin response factor 3	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. CRF proteins relocalize to the nucleus in response to cytokinin.	cytokinin response factor 3;(source:Araport11)
AT5G53370.1	protein_coding	pectin methylesterase PCR fragment F		pectin methylesterase PCR fragment F;(source:Araport11)
AT5G53380.1	protein_coding	O-acyltransferase (WSD1-like) family protein		O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT5G53390.1	protein_coding	O-acyltransferase (WSD1-like) family protein	Encodes a member of the bifunctional wax ester synthase/diacylglycerol acyltransferase gene family, WSD11, which is expressed in elongating petals and localized to the plasma membrane.	O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT5G49010.1	protein_coding	DNA replication protein-related	Similar to the SLD5 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.	DNA replication protein-like protein;(source:Araport11)
AT5G48930.1	protein_coding	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase	At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway.  Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth. The mRNA is cell-to-cell mobile.	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase;(source:Araport11)
AT5G49020.1	protein_coding	protein arginine methyltransferase 4A	Encodes a type I protein arginine methyltransferase. PRMT4a can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.	protein arginine methyltransferase 4A;(source:Araport11)
AT5G48940.1	protein_coding	Leucine-rich repeat transmembrane protein kinase family protein	RGFR2 is a leucine-­rich repeat receptor kinase that, together with RGFR1 and RGFR3, binds ROOT GROWTH FACTORS and is required for establishing the gradient of PLETHORA1 and PLETHORA2 essential for proper root growth and development.	Leucine-rich repeat transmembrane protein kinase family protein;(source:Araport11)
AT5G49030.1	protein_coding	tRNA synthetase class I (I, L, M and V) family protein		tRNA synthetase class I (I, L, M and V) family protein;(source:Araport11)
AT5G48950.1	protein_coding	Thioesterase superfamily protein	Encodes one of the two functional DHNA-CoA (1,4-dihydroxy-2-naphthoyl-CoA) thioesterases found in Arabidopsis.	Thioesterase superfamily protein;(source:Araport11)
AT5G49040.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT5G48960.1	protein_coding	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase		HAD-superfamily hydrolase, subfamily IG, 5-nucleotidase;(source:Araport11)
AT5G49050.1	protein_coding			universal stress A-like protein;(source:Araport11)
AT5G48970.1	protein_coding	Mitochondrial substrate carrier family protein	Encodes a mitochondrial thiamin diphosphate carrier.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G48980.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G48910.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes LPA66, a chloroplast protein of the pentatricopeptide repeat family. In lpa66 mutants, editing of psbF that converts serine to phenylalanine is specifically impaired. lpa66 mutants also display a high chlorophyll fluorescence phenotype.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G48990.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	encodes an F-box protein that interacts with SKP1 and likely to be involved in ubiquitin-mediated protein degradation.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G48920.1	protein_coding	tracheary element differentiation-related 7		tracheary element differentiation-related 7;(source:Araport11)
AT5G49000.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G23420.1	protein_coding	high-mobility group box 6	Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins.  Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.	high-mobility group box 6;(source:Araport11)
AT5G23430.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G23440.1	protein_coding	ferredoxin/thioredoxin reductase subunit A (variable subunit) 1		ferredoxin/thioredoxin reductase subunit A (variable subunit) 1;(source:Araport11)
AT5G23450.1	protein_coding	long-chain base (LCB) kinase 1	Encodes a sphingosine kinase that specifically phosphorylates D-erythro-dihydrosphingosine (DHS), but not N-acetyl-DHS or D-threo-DHS. It also also phosphorylates D-erythro-sphingosine, trans-4, trans-8-sphingadienine and phytosphingosine.	long-chain base (LCB) kinase 1;(source:Araport11)
AT5G23460.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G23470.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G23490.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G23480.1	protein_coding	SWIB/MDM2 domain;Plus-3;GYF		SWIB/MDM2, Plus-3 and GYF domain-containing protein;(source:Araport11)
AT5G58900.1	protein_coding	Homeodomain-like transcriptional regulator	R-R-type MYB protein	Homeodomain-like transcriptional regulator;(source:Araport11)
AT5G58830.1	protein_coding	Subtilisin-like serine endopeptidase family protein		Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT5G58910.1	protein_coding	laccase 16	putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	laccase 16;(source:Araport11)
AT5G59000.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G58840.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT5G58920.1	protein_coding			homeobox prospero protein;(source:Araport11)
AT5G59010.1	protein_coding	Protein kinase protein with tetratricopeptide repeat domain		kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT5G58850.1	protein_coding	myb domain protein 119	Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB119).	myb domain protein 119;(source:Araport11)
AT5G58930.1	protein_coding	Protein of unknown function (DUF740)		hypothetical protein (DUF740);(source:Araport11)
AT5G58860.1	protein_coding	cytochrome P450, family 86, subfamily A, polypeptide 1	Encodes a member of the CYP86A subfamily of cytochrome p450 genes.  Expressed significantly only in root tissue.	cytochrome P450, family 86, subfamily A, polypeptide 1;(source:Araport11)
AT5G58940.1	protein_coding	calmodulin-binding receptor-like cytoplasmic kinase 1	Arabidopsis thaliana calmodulin-binding receptor-like kinase mRNA The mRNA is cell-to-cell mobile.	calmodulin-binding receptor-like cytoplasmic kinase 1;(source:Araport11)
AT5G58870.1	protein_coding	FTSH protease 9	encodes an FtsH protease that is localized to the chloroplast	FTSH protease 9;(source:Araport11)
AT5G58950.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G58880.1	protein_coding			LRR protein;(source:Araport11)
AT5G58960.1	protein_coding	Plant protein of unknown function (DUF641)	Mutant plants display impaired light-regulation of the hypocotyl randomization response.	glucose-6-phosphate isomerase, putative (DUF641);(source:Araport11)
AT5G58890.1	protein_coding	AGAMOUS-like 82		AGAMOUS-like 82;(source:Araport11)
AT5G58970.1	protein_coding	uncoupling protein 2	UCP2 and its paralog UCP1 is a member of the PUMP2 family of uncoupling proteins. It functions as a mitochondrial transporter of spartate, glutamate and dicarboxylates.	uncoupling protein 2;(source:Araport11)
AT5G58980.1	protein_coding	Neutral/alkaline non-lysosomal ceramidase		Neutral/alkaline non-lysosomal ceramidase;(source:Araport11)
AT5G58990.1	protein_coding			28S ribosomal S34 protein;(source:Araport11)
AT5G65500.1	protein_coding	U-box domain-containing protein kinase family protein		U-box domain-containing protein kinase family protein;(source:Araport11)
AT5G53940.1	protein_coding	Yippee family putative zinc-binding protein		Yippee family putative zinc-binding protein;(source:Araport11)
AT5G53870.1	protein_coding	early nodulin-like protein 1		early nodulin-like protein 1;(source:Araport11)
AT5G53950.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM.  Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT5G54040.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G53960.1	protein_coding	ATP binding;DNA binding;DNA topoisomerase (ATP-hydrolyzing)s		Mid-1-related chloride channel domain-containing protein;(source:Araport11)
AT5G54050.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G53880.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G53890.1	protein_coding	phytosylfokine-alpha receptor 2	Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of phytosulfokine (PSK), which is a 5-aa tyrosine-sulfated peptide that primarily promotes cellular proliferation.	phytosylfokine-alpha receptor 2;(source:Araport11)
AT5G53970.1	protein_coding	Tyrosine transaminase family protein	Encodes a cytosolic tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment. AtTAT1 prefers Tyr as an amino donor but can also use Phe, Trp, His, Met, and Leu. The mRNA is cell-to-cell mobile.	Tyrosine transaminase family protein;(source:Araport11)
AT5G53900.1	protein_coding	Serine/threonine-protein kinase WNK (With No Lysine)-related		Serine/threonine-protein kinase WNK (With No Lysine)-like protein;(source:Araport11)
AT5G53980.1	protein_coding	homeobox protein 52	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	homeobox protein 52;(source:Araport11)
AT5G53910.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G53990.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G53920.1	protein_coding	ribosomal protein L11 methyltransferase-related		ribosomal protein L11 methyltransferase-like protein;(source:Araport11)
AT5G54000.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G53930.1	protein_coding			transcriptional regulator ATRX-like protein;(source:Araport11)
AT5G54010.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a flavonoid 3-O-glucoside:2&#8243;-O-glucosyltransferase that determines pollen-specific flavonol structure.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G54020.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G54030.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G40780.1	protein_coding	lysine histidine transporter 1	Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll.	lysine histidine transporter 1;(source:Araport11)
AT5G66590.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT5G66510.1	protein_coding	gamma carbonic anhydrase 3	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	gamma carbonic anhydrase 3;(source:Araport11)
AT5G66430.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G66600.1	protein_coding	Protein of unknown function, DUF547		electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G66520.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a pentatricopeptide repeat protein involved in chloroplast mRNA editing. Mutants display defects in C-U editing of ndhB.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G66440.1	protein_coding			tRNA-methyltransferase non-catalytic subunit trm6MTase subunit;(source:Araport11)
AT5G66610.1	protein_coding	DA1-related protein 7		DA1-related protein 7;(source:Araport11)
AT5G66530.1	protein_coding	Galactose mutarotase-like superfamily protein		Galactose mutarotase-like superfamily protein;(source:Araport11)
AT5G66450.1	protein_coding	Phosphatidic acid phosphatase (PAP2) family protein	Encodes a phosphatidic acid phosphatase that can be detected in chloroplast membrane fractions. This gene (LPPepsilon2) and LPPepsilon1, appear to be less important for diacylglycerol formation in the plastids than LPPgamma.	Phosphatidic acid phosphatase (PAP2) family protein;(source:Araport11)
AT5G66620.1	protein_coding	DA1-related protein 6		DA1-related protein 6;(source:Araport11)
AT5G66540.1	protein_coding			U3 small nucleolar ribonucleoprotein;(source:Araport11)
AT5G66630.1	protein_coding	DA1-related protein 5		DA1-related protein 5;(source:Araport11)
AT5G66550.1	protein_coding	Maf-like protein		Maf-like protein;(source:Araport11)
AT5G66460.1	protein_coding	Glycosyl hydrolase superfamily protein	Encodes a endo-beta-mannanase involved in seed germination and silique dehiscence.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT5G66470.1	protein_coding	RNA binding;GTP binding		GTP-binding protein Era-like protein;(source:Araport11)
AT5G66560.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G66480.1	protein_coding			bacteriophage N4 adsorption B protein;(source:Araport11)
AT5G66570.1	protein_coding	PS II oxygen-evolving complex 1	Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In <i>Arabidopsis thaliana</i> the PsbO proteins are encoded by two genes: <i>psbO1</i> and <i>psbO2</i>. PsbO1 is the major isoform in the wild-type. In plsp1-1 mutant plastids, the nonmature form of the protein localizes in the membrane. The mRNA is cell-to-cell mobile.	PS II oxygen-evolving complex 1;(source:Araport11)
AT5G66410.1	protein_coding	phosducin-like protein 3 homolog	Encodes a protein that functions in microtubule assembly. Plants with reduced levels of both PLP3a (At3g50960) and PLP3b show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.	thioredoxin domain PLP3B-like protein;(source:Araport11)
AT5G66490.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G66580.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G66420.1	protein_coding			TIM-barrel signal transduction protein;(source:Araport11)
AT5G66500.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G66330.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G66340.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G66350.1	protein_coding	Lateral root primordium (LRP) protein-related	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype.  Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.	Lateral root primordium (LRP) protein-like protein;(source:Araport11)
AT5G66270.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G66360.1	protein_coding	Ribosomal RNA adenine dimethylase family protein	Encodes a mitochondrial rRNA dimethylase.	Ribosomal RNA adenine dimethylase family protein;(source:Araport11)
AT5G66280.1	protein_coding	GDP-D-mannose 4,6-dehydratase 1	GDP-D-mannose 4,6-dehydratase	GDP-D-mannose 4,6-dehydratase 1;(source:Araport11)
AT5G66290.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G66300.1	protein_coding	NAC domain containing protein 105	Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.	NAC domain containing protein 105;(source:Araport11)
AT5G66310.1	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT5G66320.1	protein_coding	GATA transcription factor 5	Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of  development and is inducible by nitrate.	GATA transcription factor 5;(source:Araport11)
AT5G41300.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT5G41310.1	protein_coding	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain		P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT5G41260.1	protein_coding	Protein kinase protein with tetratricopeptide repeat domain		kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT5G41270.1	protein_coding			RNase P Rpr2/Rpp21 subunit domain protein;(source:Araport11)
AT5G41280.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT5G41290.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT5G49100.1	protein_coding			vitellogenin-like protein;(source:Araport11)
AT5G49110.1	protein_coding			fanconi anemia group I-like protein;(source:Araport11)
AT5G49120.1	protein_coding	Protein of unknown function (DUF581)		DUF581 family protein, putative (DUF581);(source:Araport11)
AT5G49130.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT5G49140.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G35420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to unknown protein (gb|AAD56332.1);(source:TAIR10)
AT5G35410.1	protein_coding	Protein kinase superfamily protein	encodes a member of the CBL-interacting protein kinase family, is a regulatory component controlling plant potassium nutrition	Protein kinase superfamily protein;(source:Araport11)
AT5G44930.1	protein_coding	Exostosin family protein	Encodes a putative arabinosyltransferase that is associated with arabinan biosynthesis and is not redundant with ARAD1.  The two glycosyltransferases may function in complexes held together by disulfide bridges.	Exostosin family protein;(source:Araport11)
AT5G44940.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G45030.1	protein_coding	Trypsin family protein		Trypsin family protein;(source:Araport11)
AT5G44870.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	Encodes LAZ5, a TIR-class NB-LRR R protein of unknown pathogen specificity with sequence similarity to RPS4, an R protein conferring resistance to Pseudomonas syringae expressing the effector AvrRPS4.  Overexpression of LAZ5 results in hypersensitive cell death (plants did not survive to set seeds).	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G44950.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G45040.1	protein_coding	Cytochrome c	Encodes a Class I cytochrome c family member possessing a high structural homology with photosynthetic cytochrome c(6) from cyanobacteria, but structurally and functionally distinct through the presence of a disulfide bond.	Cytochrome c;(source:Araport11)
AT5G44880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14020.1);(source:TAIR10)
AT5G44960.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G45050.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class)	Encodes a member of the WRKY Transcription Factor (Group II-e) family.	Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G44890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1);(source:TAIR10)
AT5G44970.1	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT5G44900.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT5G44980.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G44910.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT5G44990.1	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT5G44920.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein	Encodes a KASH domain protein that localizes to the nuclear envelope and affects nuclear morphology.	Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT5G45000.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G45010.1	protein_coding	DSS1 homolog on chromosome V		DSS1 homolog on chromosome V;(source:Araport11)
AT5G45020.1	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT5G49820.1	protein_coding	Protein of unknown function, DUF647		root UVB sensitive protein (Protein of unknown function, DUF647);(source:Araport11)
AT5G49830.1	protein_coding	exocyst complex component 84B	Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.	exocyst complex component 84B;(source:Araport11)
AT5G49840.1	protein_coding	ATP-dependent Clp protease		ATP-dependent Clp protease;(source:Araport11)
AT5G49850.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT5G49860.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT5G49810.1	protein_coding	methionine S-methyltransferase	Arabidopsis thaliana methionine S-methyltransferase, an enzyme that catalyzes S  -methylmethionine formation. The mRNA is cell-to-cell mobile.	methionine S-methyltransferase;(source:Araport11)
AT5G67190.1	protein_coding	DREB and EAR motif protein 2	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	DREB and EAR motif protein 2;(source:Araport11)
AT5G67110.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	encodes a myc/bHLH transcription factor-like  protein.  Gene product is involved in fruit  dehiscence.  Mutant siliques fail to dehisce.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G67200.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G67120.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G67210.1	protein_coding	Protein of unknown function (DUF579)	Encode a DUF579 (domain of unknown function 579) containing protein essential for normal xylan synthesis and deposition in the secondary cell wall.	IRREGULAR XYLEM protein (DUF579);(source:Araport11)
AT5G67130.1	protein_coding	PLC-like phosphodiesterases superfamily protein		PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT5G67220.1	protein_coding	FMN-linked oxidoreductases superfamily protein		FMN-linked oxidoreductases superfamily protein;(source:Araport11)
AT5G67230.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14.  IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT5G67140.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G67070.1	protein_coding	ralf-like 34	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. The mRNA is cell-to-cell mobile.	ralf-like 34;(source:Araport11)
AT5G67150.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G67240.1	protein_coding	small RNA degrading nuclease 3		small RNA degrading nuclease 3;(source:Araport11)
AT5G67080.1	protein_coding	mitogen-activated protein kinase kinase kinase 19	member of MEKK subfamily	mitogen-activated protein kinase kinase kinase 19;(source:Araport11)
AT5G67160.1	protein_coding	HXXXD-type acyl-transferase family protein	Encodes a member of the BAHD acyltransferase superfamily. Mutants have enhanced susceptibility to virulent and avirulent pathogens and are defective in pathogen induced SA biosynthesis. EPS1 may act upstream of SA biosynthesis as application of SA can rescue the mutant phenotype.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G67250.1	protein_coding	SKP1/ASK1-interacting protein 2	Encodes an SKP1 interacting partner (SKIP2).Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2, and 3. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.	SKP1/ASK1-interacting protein 2;(source:Araport11)
AT5G67090.1	protein_coding	Subtilisin-like serine endopeptidase family protein	Encodes a subtilisin-like serine protease with in vitro protease activity.	Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT5G67170.1	protein_coding	SEC-C motif-containing protein / OTU-like cysteine protease family protein		SEC-C motif-containing protein / OTU-like cysteine protease family protein;(source:Araport11)
AT5G67100.1	protein_coding	DNA-directed DNA polymerases	Encodes the putative catalytic subunit of the DNA polymerase alpha.  Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.	DNA-directed DNA polymerase;(source:Araport11)
AT5G67180.1	protein_coding	target of early activation tagged (EAT) 3		target of early activation tagged (EAT) 3;(source:Araport11)
AT5G40470.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT5G40480.1	protein_coding	embryo defective 3012		embryo defective 3012;(source:Araport11)
AT5G65600.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G65610.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G65620.1	protein_coding	Zincin-like metalloproteases family protein		Zincin-like metalloproteases family protein;(source:Araport11)
AT5G65540.1	protein_coding			transcription initiation factor TFIID subunit;(source:Araport11)
AT5G65630.1	protein_coding	global transcription factor group E7	This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE7 show some resistance to agrobacterium-mediated root transformation.	global transcription factor group E7;(source:Araport11)
AT5G65550.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G65640.1	protein_coding	beta HLH protein 93	bHLH093/NFL encodes a bHLH transcription factor involved in GA mediated control of flowering time. Mutants are non-flowering in short days and phenotype can be reversed with GA application. Based on the expression of GA biosynthetic genes in the mutant, it likely acts through regulation of GA metabolism. Its expression shows developmental stage and tissue specificity. In short days it is expressed mainly in root tips and SAM, with weak expression in cotyledons throughout development. In LD GUS activity was observed in the hypocotyl and in root tips and SAM throughout the developmental stages.	beta HLH protein 93;(source:Araport11)
AT5G65560.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G65650.1	protein_coding	Protein of unknown function (DUF1195)		sugar transporter, putative (DUF1195);(source:Araport11)
AT5G65570.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G65660.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G65580.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G65590.1	protein_coding	Dof-type zinc finger DNA-binding family protein	Encodes a plant-specific Dof-type transcription factor expressed in maturing guard cells, but not in guard mother cells. It regulates essential processes of stomatal guard cell maturation and functions as a key transcription factor regulating the final stages of guard cell differentiation.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT5G58120.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G58130.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes ROS3 (repressor of silencing 3), a RNA-binding protein required for DNA demethylation.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G58050.1	protein_coding	SHV3-like 4	Encodes a member of the glycerophosphodiester phosphodiesterase like (GDPD-like) family.	SHV3-like 4;(source:Araport11)
AT5G58140.1	protein_coding	phototropin 2	Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation.  Localized to the Golgi apparatus under the induction of blue light. The mRNA is cell-to-cell mobile.	phototropin 2;(source:Araport11)
AT5G58060.1	protein_coding	SNARE-like superfamily protein	member of YKT6 Gene Family	SNARE-like superfamily protein;(source:Araport11)
AT5G58070.1	protein_coding	temperature-induced lipocalin	Encodes a temperature-induced lipocalin TIL1.  Involved in thermotolerance.  Peripherally associated with plasma membrane.	temperature-induced lipocalin;(source:Araport11)
AT5G58080.1	protein_coding	response regulator 18	member of Response Regulator: B- Type	response regulator 18;(source:Araport11)
AT5G58090.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G58100.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G58110.1	protein_coding	chaperone binding;ATPase activators		chaperone binding / ATPase activator;(source:Araport11)
AT5G49250.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT5G49170.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G49340.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 4	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 4;(source:Araport11)
AT5G49260.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G49180.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily	Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds and more specifically in mucilage secretory cells of seeds. Mutants have smaller mucilage cells and abnormal mucilage profiles.	Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT5G49270.1	protein_coding	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family	Involved in successfully establishing tip growth in root hairs.	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family;(source:Araport11)
AT5G49190.1	protein_coding	sucrose synthase 2	Encodes a sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). However, analyses of an sus2 mutant revealed a deficiency in sucrose synthase activity 12 and 15 days after flowering. There are some reports that SUS2 transcript levels are increased in leaves specifically by O(2) deficiency whereas other reports indicate that SUS2 is expressed only in seeds. Immulocalization shows that SUS2 is present in the cytosol of developing seeds, but, it also associated with plastids, though not located within them.	sucrose synthase 2;(source:Araport11)
AT5G49280.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G49200.1	protein_coding	WD-40 repeat family protein / zfwd4 protein (ZFWD4)		WD-40 repeat family protein / zfwd4 protein (ZFWD4);(source:Araport11)
AT5G49290.1	protein_coding	receptor like protein 56		receptor like protein 56;(source:Araport11)
AT5G49210.1	protein_coding			stress response NST1-like protein;(source:Araport11)
AT5G49300.1	protein_coding	GATA transcription factor 16	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 16;(source:Araport11)
AT5G49220.1	protein_coding	Protein of unknown function (DUF789)		hypothetical protein (DUF789);(source:Araport11)
AT5G49310.1	protein_coding	importin alpha isoform 5	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	importin alpha isoform 5;(source:Araport11)
AT5G49230.1	protein_coding	Drought-responsive family protein	Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction.	Drought-responsive family protein;(source:Araport11)
AT5G49320.1	protein_coding	Protein of unknown function (DUF1218)		transmembrane protein, putative (DUF1218);(source:Araport11)
AT5G49330.1	protein_coding	myb domain protein 111	Member of the R2R3 factor gene family.	myb domain protein 111;(source:Araport11)
AT5G49240.1	protein_coding	pseudo-response regulator 4	member of Response Regulator: Pseudo	pseudo-response regulator 4;(source:Araport11)
AT5G49160.1	protein_coding	methyltransferase 1	Encodes a cytosine methyltransferase MET1.  Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation. The mRNA is cell-to-cell mobile.	methyltransferase 1;(source:Araport11)
AT5G37800.1	protein_coding	RHD SIX-LIKE 1		RHD SIX-LIKE 1;(source:Araport11)
AT5G37810.1	protein_coding	NOD26-like intrinsic protein 4;1		NOD26-like intrinsic protein 4;(source:Araport11)
AT5G37820.1	protein_coding	NOD26-like intrinsic protein 4;2		NOD26-like intrinsic protein 4;(source:Araport11)
AT5G37830.1	protein_coding	oxoprolinase 1	Encodes a 5-oxoprolinase that acts in the glutathione degradation pathway and in 5-oxoproline metabolism.	oxoprolinase 1;(source:Araport11)
AT5G37840.1	protein_coding			plastid movement impaired protein;(source:Araport11)
AT5G37790.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G61910.1	protein_coding	DCD (Development and Cell Death) domain protein		DCD (Development and Cell Death) domain protein;(source:Araport11)
AT5G61920.1	protein_coding			FLX-like protein;(source:Araport11)
AT5G61930.1	protein_coding	Arabidopsis thaliana protein of unknown function (DUF794)	ACCUMULATION OF PHOTOSYSTEM ONE 3	APO RNA-binding protein (DUF794);(source:Araport11)
AT5G61940.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT5G61950.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT5G61960.1	protein_coding	MEI2-like protein 1	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.	MEI2-like protein 1;(source:Araport11)
AT5G61980.1	protein_coding	ARF-GAP domain 1	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD1 belongs to the class 1, together with AGD2, AGD3 and AGD4. Not expressed in hypocotyls and cotyledons.	ARF-GAP domain 1;(source:Araport11)
AT5G61970.1	protein_coding	signal recognition particle-related / SRP-related		signal recognition particle-related / SRP-like protein;(source:Araport11)
AT5G65830.1	protein_coding	receptor like protein 57		receptor like protein 57;(source:Araport11)
AT5G48320.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G48330.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT5G48340.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G48350.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G48360.1	protein_coding	Actin-binding FH2 (formin homology 2) family protein		Actin-binding FH2 (formin homology 2) family protein;(source:Araport11)
AT5G48370.1	protein_coding	Thioesterase/thiol ester dehydrase-isomerase superfamily protein		Thioesterase/thiol ester dehydrase-isomerase superfamily protein;(source:Araport11)
AT5G48310.1	protein_coding		Protein of unknown function that may be involved in stress response. Strongly expressed in vascular tissues.Mutants are ABA- insensitive.	portal protein;(source:Araport11)
AT5G44730.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G44820.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein		Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT5G44740.1	protein_coding	Y-family DNA polymerase H	Y-family DNA polymerase. Catalyses translesion synthesis in response to UV damage. Functionally interacts with PCNA2. Has a ubiquitin binding motif.	Y-family DNA polymerase H;(source:Araport11)
AT5G44830.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G44750.1	protein_coding	DNA-directed DNA polymerases	Homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).	DNA-directed DNA polymerase;(source:Araport11)
AT5G44760.1	protein_coding	C2 domain-containing protein		C2 domain-containing protein;(source:Araport11)
AT5G44770.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G44690.1	protein_coding			RING finger PFF0165c-like protein;(source:Araport11)
AT5G44780.1	protein_coding		Member of MORF family consisting of of nine full-length proteins encoded in the nuclear genome. MORF proteins are required for all RNA editing events in plastids and for many, possibly also all, sites in mitochondria. Potential link between the RNA binding PPR protein and the protein contributing the enzymatic activity in RNA editing.	high molecular weight subunit-like glutenin;(source:Araport11)
AT5G44700.1	protein_coding	Leucine-rich repeat transmembrane protein kinase	Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase.  GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.	Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT5G44790.1	protein_coding	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1)	ATP dependent copper transporter vital for ethylene response pathway	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1);(source:Araport11)
AT5G44710.1	protein_coding			37S ribosomal protein S27;(source:Araport11)
AT5G44800.1	protein_coding	chromatin remodeling 4		chromatin remodeling 4;(source:Araport11)
AT5G44720.1	protein_coding	Molybdenum cofactor sulfurase family protein		Molybdenum cofactor sulfurase family protein;(source:Araport11)
AT5G56250.1	protein_coding	hapless 8		hapless 8;(source:Araport11)
AT5G56260.1	protein_coding	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase		Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase;(source:Araport11)
AT5G56220.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G56230.1	protein_coding	prenylated RAB acceptor 1.G2		prenylated RAB acceptor 1.G2;(source:Araport11)
AT5G56240.1	protein_coding			hapless protein;(source:Araport11)
AT5G48780.1	protein_coding	disease resistance protein (TIR-NBS class)		disease resistance protein (TIR-NBS class);(source:Araport11)
AT5G48790.1	protein_coding	Domain of unknown function (DUF1995)		LOW PSII ACCUMULATION protein (DUF1995);(source:Araport11)
AT5G48710.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G48880.1	protein_coding	peroxisomal 3-keto-acyl-CoA thiolase 2	Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.	peroxisomal 3-keto-acyl-CoA thiolase 2;(source:Araport11)
AT5G48720.1	protein_coding	x-ray induced transcript 1	Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray.  Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.	x-ray induced transcript 1;(source:Araport11)
AT5G48800.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G48890.1	protein_coding	C2H2-like zinc finger protein	Encodes a C(2) H(2) -type zinc-finger transcriptional regulator and is expressed in the leaf vasculature and the vegetative shoot apical meristem and controls the transition to flowering.	C2H2-like zinc finger protein;(source:Araport11)
AT5G48810.1	protein_coding	cytochrome B5 isoform D	Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation. The mRNA is cell-to-cell mobile.	cytochrome B5 isoform D;(source:Araport11)
AT5G48730.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G48820.1	protein_coding	inhibitor/interactor with cyclin-dependent kinase	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle.  Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.	inhibitor/interactor with cyclin-dependent kinase;(source:Araport11)
AT5G48740.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G48830.1	protein_coding			phosphoglycolate phosphatase;(source:Araport11)
AT5G48750.1	protein_coding	Cytochrome b561/ferric reductase transmembrane with DOMON related domain		Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein;(source:Araport11)
AT5G48840.1	protein_coding	homolog of bacterial PANC	Encodes a pantothenate synthetase that appears to be located in the cytosol. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis. Analysis of the catalytic properties of this enzyme indicate that it might be able to synthesize adequate amounts of pantothenate even in the presence of low levels of pantoate.	pantoate-beta-alanine ligase;(source:Araport11)
AT5G48760.1	protein_coding	Ribosomal protein L13 family protein		Ribosomal protein L13 family protein;(source:Araport11)
AT5G48850.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G48770.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G48860.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G48870.1	protein_coding	Small nuclear ribonucleoprotein family protein	SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes.	Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT5G52380.1	protein_coding			
AT5G52300.1	protein_coding	CAP160 protein	Encodes a protein that is induced in expression in response to water deprivation such as cold, high-salt, and desiccation. The response appears to be via abscisic acid. The promoter region contains two ABA-responsive elements (ABREs) that are required for the dehydration-responsive expression of rd29B as cis-acting elements. Protein is a member of a gene family with other members found plants, animals and fungi.	CAP160 protein;(source:Araport11)
AT5G52390.1	protein_coding	PAR1 protein		PAR1 protein;(source:Araport11)
AT5G52310.1	protein_coding	low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)	cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression The mRNA is cell-to-cell mobile.	low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A);(source:Araport11)
AT5G52480.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT5G52400.1	protein_coding	cytochrome P450, family 715, subfamily A, polypeptide 1	member of CYP715A	cytochrome P450, family 715, subfamily A, polypeptide 1;(source:Araport11)
AT5G52320.1	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 4		cytochrome P450, family 96, subfamily A, polypeptide 4;(source:Araport11)
AT5G52490.1	protein_coding	Fibrillarin family protein		Fibrillarin family protein;(source:Araport11)
AT5G52410.1	protein_coding			oxidoreductase/transition metal ion-binding protein;(source:Araport11)
AT5G52330.1	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT5G52500.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G52420.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G52340.1	protein_coding	exocyst subunit exo70 family protein A2	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein A2;(source:Araport11)
AT5G52430.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G52350.1	protein_coding	exocyst subunit exo70 family protein A3	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein A3;(source:Araport11)
AT5G52440.1	protein_coding	Bacterial sec-independent translocation protein mttA/Hcf106	HCF106; nuclear gene for chloroplast. Thylakoid membrane delta pH translocation pathway component protein; related to Escherichia coli TatA and TatB The mRNA is cell-to-cell mobile.	Bacterial sec-independent translocation protein mttA/Hcf106;(source:Araport11)
AT5G52360.1	protein_coding	actin depolymerizing factor 10	ADF10 is an actin-depolymerizing factor that preferentially binds ADP-G-actin and inhibits G-actin nucleotide exchange. ADF10 promotes actin turnover in pollen , regulating organization of actin filaments and vesicle trafficking during pollen tube growth.	actin depolymerizing factor 10;(source:Araport11)
AT5G52370.1	protein_coding			28S ribosomal S34 protein;(source:Araport11)
AT5G52450.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT5G52460.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G52470.1	protein_coding	fibrillarin 1	Encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.	fibrillarin 1;(source:Araport11)
AT5G05160.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes a receptor-like kinase that activates secondary growth, the production of secondary vascular tissues.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G05170.1	protein_coding	Cellulose synthase family protein	Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis.  As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening. The xylem cells in primary root have reduced cell expansion and higher than normal lignification.	Cellulose synthase family protein;(source:Araport11)
AT5G05180.1	protein_coding			myosin heavy chain, striated protein;(source:Araport11)
AT5G05190.1	protein_coding	Protein of unknown function (DUF3133)		hypothetical protein (DUF3133);(source:Araport11)
AT5G05200.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G05210.1	protein_coding	Surfeit locus protein 6		Surfeit locus protein 6;(source:Araport11)
AT5G66050.1	protein_coding	Wound-responsive family protein		Wound-responsive family protein;(source:Araport11)
AT5G65980.1	protein_coding	Auxin efflux carrier family protein		Auxin efflux carrier family protein;(source:Araport11)
AT5G66060.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G66150.1	protein_coding	Glycosyl hydrolase family 38 protein		Glycosyl hydrolase family 38 protein;(source:Araport11)
AT5G65990.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT5G66070.1	protein_coding	RING/U-box superfamily protein	E3 ubiquitin ligase that functions in negative regulation of ABA signaling.	RING/U-box superfamily protein;(source:Araport11)
AT5G66160.1	protein_coding	receptor homology region transmembrane domain ring H2 motif protein 1	Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Localized to endoplasmic reticulum and co-localizes with DIP positive vesicles and to the trans-golgi network when complexed with RMR2.	receptor homology region transmembrane domain ring H2 motif protein 1;(source:Araport11)
AT5G66080.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT5G66170.1	protein_coding	sulfurtransferase 18	Encodes a thiosulfate sulfurtransferase/rhodanese.	sulfurtransferase 18;(source:Araport11)
AT5G66000.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G66090.1	protein_coding			cell wall integrity/stress response component;(source:Araport11)
AT5G66010.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G66180.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G66020.1	protein_coding	Phosphoinositide phosphatase family protein	Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.  non-consensus AT donor splice site at exon 7, TA donor splice site at exon 10, AT acceptor splice at exon 13.	Phosphoinositide phosphatase family protein;(source:Araport11)
AT5G66100.1	protein_coding	winged-helix DNA-binding transcription factor family protein	Encodes a LAM domain containing protein that is involved in leaf senescence.	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT5G66190.1	protein_coding	ferredoxin-NADP(+)-oxidoreductase 1	Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase.  It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid.  The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme.  AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.	ferredoxin-NADP[+]-oxidoreductase 1;(source:Araport11)
AT5G66030.1	protein_coding	Golgi-localized GRIP domain-containing protein	Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in  AtGRIP is crucial for Golgi localization.	Golgi-localized GRIP domain-containing protein;(source:Araport11)
AT5G66110.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G66200.1	protein_coding	armadillo repeat only 2	Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules.	armadillo repeat only 2;(source:Araport11)
AT5G66040.1	protein_coding	sulfurtransferase protein 16	Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity  in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo. The mRNA is cell-to-cell mobile.	sulfurtransferase protein 16;(source:Araport11)
AT5G66120.1	protein_coding	3-dehydroquinate synthase, putative		3-dehydroquinate synthase;(source:Araport11)
AT5G66210.1	protein_coding	calcium-dependent protein kinase 28	Calcium Dependent Protein Kinase. Functions in the BIK1 innate immune response pathway.	calcium-dependent protein kinase 28;(source:Araport11)
AT5G66130.1	protein_coding	RADIATION SENSITIVE 17	Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination.  Mutant has increased sensitivity to MMS and increased telomere lengths.	RADIATION SENSITIVE 17;(source:Araport11)
AT5G66220.1	protein_coding	Chalcone-flavanone isomerase family protein		Chalcone-flavanone isomerase family protein;(source:Araport11)
AT5G66140.1	protein_coding	proteasome alpha subunit D2	Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.	proteasome alpha subunit D2;(source:Araport11)
AT5G66230.1	protein_coding	Chalcone-flavanone isomerase family protein		Chalcone-flavanone isomerase family protein;(source:Araport11)
AT5G49770.1	protein_coding	Leucine-rich repeat protein kinase family protein	Leucine rich receptor kinase.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G49690.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G49780.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G49700.1	protein_coding	Predicted AT-hook DNA-binding family protein		Putative AT-hook DNA-binding family protein;(source:Araport11)
AT5G49790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36010.1);(source:TAIR10)
AT5G49710.1	protein_coding			RING finger protein;(source:Araport11)
AT5G49720.1	protein_coding	glycosyl hydrolase 9A1	Encodes a membrane-bound endo-1,4-beta-D-glucanase, involved in cellulose biosynthesis. Loss-of-function mutants have severe cellulose-deficient phenotypes. During cell elongation, KOR1 is associated with Golgi apparatus and early endosome. Inhibition of cellulose biosynthesis promoted a redistribution of KOR1 in subcellular locations. These observations suggest that deposition of cellulose involves the intracellular cycling of KOR1.	glycosyl hydrolase 9A1;(source:Araport11)
AT5G49730.1	protein_coding	ferric reduction oxidase 6	Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner.	ferric reduction oxidase 6;(source:Araport11)
AT5G49740.1	protein_coding	ferric reduction oxidase 7	Encodes a chloroplast ferric chelate reductase.  Shows differential splicing and has three different mRNA products.  Expressed in the shoot, flower and cotyledon.	ferric reduction oxidase 7;(source:Araport11)
AT5G49760.1	protein_coding	Leucine-rich repeat protein kinase family protein	Leucine rich receptor kinase.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G49750.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G35580.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G35590.1	protein_coding	proteasome alpha subunit A1	Encodes 20S proteasome subunit PAA1 (PAA1).	proteasome alpha subunit A1;(source:Araport11)
AT5G35600.1	protein_coding	histone deacetylase7	Encodes a histone deacetylase that is crucial for female gametophyte development and embryogenesis.	histone deacetylase7;(source:Araport11)
AT5G45580.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT5G45590.1	protein_coding	Ribosomal protein L35		Ribosomal protein L35;(source:Araport11)
AT5G45600.1	protein_coding	YEATS family protein	The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei.  It negatively regulates flowering by controlling the H4 acetylation levels in the FLC and FT chromatin.	YEATS family protein;(source:Araport11)
AT5G67280.1	protein_coding	receptor-like kinase		receptor-like kinase;(source:Araport11)
AT5G39250.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G39260.1	protein_coding	expansin A21	expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A21;(source:Araport11)
AT5G39270.1	protein_coding	expansin A22	expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A22;(source:Araport11)
AT5G39190.1	protein_coding	germin-like protein 2	germin-like protein (GLP2a)	germin-like protein 2;(source:Araport11)
AT5G39280.1	protein_coding	expansin A23	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A23;(source:Araport11)
AT5G39200.1	protein_coding			myb-like protein Q;(source:Araport11)
AT5G39290.1	protein_coding	expansin A26	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin-A25 protein;(source:Araport11)
AT5G39210.1	protein_coding	chlororespiratory reduction 7	Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex. The mRNA is cell-to-cell mobile.	chlororespiratory reduction 7;(source:Araport11)
AT5G39300.1	protein_coding	expansin A25	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A25;(source:Araport11)
AT5G39220.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G39310.1	protein_coding	expansin A24	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A24;(source:Araport11)
AT5G39230.1	protein_coding	TFIIB zinc-binding protein		TFIIB zinc-binding protein;(source:Araport11)
AT5G39320.1	protein_coding	UDP-glucose 6-dehydrogenase family protein		UDP-glucose 6-dehydrogenase family protein;(source:Araport11)
AT5G39240.1	protein_coding		Encodes a atypical member of the bHLH (basic helix-loop-helix) family transcriptional factors.	transcription factor UPBEAT-like protein;(source:Araport11)
AT5G50960.1	protein_coding	nucleotide binding protein 35	Highly similar to Saccharomyces cerevisiae NBP35, locus YGL091C.  Cytosolic protein that homodimerizes and can assemble both 4Fe-4S - type and 2Fe-2S - type clusters on its amino terminal and carboxy therminal respectively. Null mutants are embryo lethal.	nucleotide binding protein 35;(source:Araport11)
AT5G50970.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G51060.1	protein_coding	NADPH/respiratory burst oxidase protein D	RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx.	NADPH/respiratory burst oxidase protein D;(source:Araport11)
AT5G51070.1	protein_coding	Clp ATPase	ATP-dependent Clp protease regulatory subunit The mRNA is cell-to-cell mobile.	Clp ATPase;(source:Araport11)
AT5G50990.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G50910.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G51000.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G50920.1	protein_coding	CLPC homologue 1	Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. Association of Hsp93 with the inner envelope membrane through its N domain is important for the functions of Hsp93 in vivo.	CLPC homologue 1;(source:Araport11)
AT5G51010.1	protein_coding	Rubredoxin-like superfamily protein		Rubredoxin-like superfamily protein;(source:Araport11)
AT5G50930.1	protein_coding	Histone superfamily protein	Encodes a protein with similarity to mammalian MHF1 that acts in the same pathway as FANCM to restrain class II meiotic crossing over, and acts with FANCM during meiosis and to repair cross-links.  It also assumes an opposing role from FANCM in homologous recombination and only FANCM is essential for replicative repair in the absence of the endonuclease MUS81.	Histone superfamily protein;(source:Araport11)
AT5G51020.1	protein_coding	crumpled leaf	Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids.  Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division.	crumpled leaf;(source:Araport11)
AT5G50940.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT5G51030.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G50950.1	protein_coding	FUMARASE 2	Encodes a fumarase enzyme initially shown to be in the mitochondria through proteomic studies but later shown to be present in the cytosol using an RFP fluorescent protein tag. It appears to be important for the accumulation of fumarate from malate in leaves in the light, and helps to promote nitrogen assimilation under high nitrogen conditions. It does not appear to be necessary for lipid metabolism and seedling growth. Inhibition of fumarate accumulation results in an overall shift in the cold response of leaves, with a complete inhibition of cold acclimation of photosynthesis.	FUMARASE 2;(source:Araport11)
AT5G51040.1	protein_coding		Encodes succinate dehydrogenase assembly factor 2 (SDHAF2), a low abundance mitochondrial protein needed for assembly and activity of mitochondrial complex II and for normal root elongation.Sdhaf2 knockdown line showed lowered SDH1 protein abundance, lowered maximal SDH activity and less protein-bound FAD at the molecular mass of SDH1.	succinate dehydrogenase assembly factor;(source:Araport11)
AT5G51050.1	protein_coding	Mitochondrial substrate carrier family protein	Encodes an APC isoform in Arabidopsis, a calcium-dependent mitochondrial ATP-Mg/Pi transporter.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G17450.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G17460.1	protein_coding			glutamyl-tRNA (Gln) amidotransferase subunit C;(source:Araport11)
AT5G17470.1	protein_coding	EF hand calcium-binding protein family		EF hand calcium-binding protein family;(source:Araport11)
AT5G17480.1	protein_coding	pollen calcium-binding protein 1		pollen calcium-binding protein 1;(source:Araport11)
AT5G17490.1	protein_coding	RGA-like protein 3	DELLA subfamily member involved in GA signal transduction	RGA-like protein 3;(source:Araport11)
AT5G17500.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT5G17510.1	protein_coding			mediator of RNA polymerase II transcription subunit-like protein;(source:Araport11)
AT5G17520.1	protein_coding	root cap 1 (RCP1)	Encodes a maltose transporter that is expressed in leaves and roots. Mutations at the MEX1 locus cause accumulation of both starch and maltose in  leaves, with maltose levels at least 40 times higher than that of wild-type. This gene encodes a protein located in the chloroplast envelope.	root cap 1 (RCP1);(source:Araport11)
AT5G17440.1	protein_coding	LUC7 related protein		LUC7 related protein;(source:Araport11)
AT5G22780.1	protein_coding	Adaptor protein complex AP-2, alpha subunit		Adaptor protein complex AP-2, alpha subunit;(source:Araport11)
AT5G54730.1	protein_coding	homolog of yeast autophagy 18 (ATG18) F		yeast autophagy 18 F-like protein;(source:Araport11)
AT5G54740.1	protein_coding	seed storage albumin 5		seed storage albumin 5;(source:Araport11)
AT5G54690.1	protein_coding	galacturonosyltransferase 12	Encodes a protein with  putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%).	galacturonosyltransferase 12;(source:Araport11)
AT5G54700.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G54710.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G54720.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G42280.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G42290.1	protein_coding	transcription activator-related		transcription activator-like protein;(source:Araport11)
AT5G42300.1	protein_coding	ubiquitin-like protein 5		ubiquitin-like protein 5;(source:Araport11)
AT5G42220.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G42310.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein	Encodes a member of the Arabidopsis PPR family, expressed in the chloroplast, that acts as a regulator of chloroplast protein synthesis, interacts with the petB-petD intergenic region, and is required for the generation of petB and petD monocistronic RNAs.	Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT5G42230.1	protein_coding	serine carboxypeptidase-like 41		serine carboxypeptidase-like 41;(source:Araport11)
AT5G42320.1	protein_coding	Zn-dependent exopeptidases superfamily protein		Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT5G42240.1	protein_coding	serine carboxypeptidase-like 42		serine carboxypeptidase-like 42;(source:Araport11)
AT5G42250.1	protein_coding	Zinc-binding alcohol dehydrogenase family protein		Zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT5G42260.1	protein_coding	beta glucosidase 12		beta glucosidase 12;(source:Araport11)
AT5G42270.1	protein_coding	FtsH extracellular protease family	VAR1 contains a conserved motif for ATPase and a metalloprotease characteristic to FtsH proteins, and is targeted into chloroplasts. A VAR1-fusion protein synthesized in vitro exhibited ATPase activity and partial metalloprotease activity. This protein is located to the thylakoid membrane and forms a complex with VAR2. FtsH1 (VAR1) and FtsH5 are interchangeable in thylakoid membranes. Phosphorylation of this protein is dependent on calcium. The mRNA is cell-to-cell mobile.	FtsH extracellular protease family;(source:Araport11)
AT5G50160.1	protein_coding	ferric reduction oxidase 8	Encodes a ferric chelate reductase that is expressed in shoots and flowers.	ferric reduction oxidase 8;(source:Araport11)
AT5G50250.1	protein_coding	chloroplast RNA-binding protein 31B	Encodes a RNA binding protein.  A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).  Supports editing of specific CP31A-dependent sites.	chloroplast RNA-binding protein 31B;(source:Araport11)
AT5G50170.1	protein_coding	C2 calcium/lipid-binding and GRAM domain containing protein		C2 calcium/lipid-binding and GRAM domain containing protein;(source:Araport11)
AT5G50260.1	protein_coding	Cysteine proteinases superfamily protein	Encodes a papain-like cysteine protease involved in tapetal programmed cell death and pollen development.CEP1 is expressed specifically in the tapetum from stages 5 to 11 of anther development. The CEP1 protein first appears as a proenzyme in precursor protease vesicles, and is then transported to the vacuole and transformed into the mature enzyme before rupture of the vacuole. CEP1 was also released to the tapetal cell wall during late stage 6 and stage 7. After the tapetal cell wall degenerated, the CEP1 enzyme entered the callose wall from the degenerated tapetal cell wall and was probably involved in degeneration of the callose wall.	Cysteine proteinases superfamily protein;(source:Araport11)
AT5G50180.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G50270.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G50190.1	other_rna			other_RNA;(source:Araport11)
AT5G50280.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G50200.1	protein_coding	nitrate transmembrane transporters	Wound-responsive gene 3 (WR3).  Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.	nitrate transmembrane transporter;(source:Araport11)
AT5G50290.1	protein_coding			wall-associated receptor kinase galacturonan-binding protein;(source:Araport11)
AT5G50210.1	protein_coding	quinolinate synthase	Encodes an Fe-S binding protein with quinolinate synthase (QS) activity and cysteine desulfurase activator activity. The QS activity was demonstrated by functional complementation of corresponding E. coli mutants and complementation of embryo-lethal phenotypes of the QS homozygous null allele in Arabidopsis. The SufE domain of the protein also stimulates the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. This protein binds a (4Fe-Su)2+ cluster in its NadA domain and is localized in the chloroplast.	quinolinate synthase;(source:Araport11)
AT5G50300.1	protein_coding	Xanthine/uracil permease family protein	Encodes a homolog of the adenine-guanine-hypoxanthine transporter AzgA of Aspergillus nidulans. Function as a plant adenine-guanine transporter.  Two closely related genes exist in Arabidopsis: AT3G10960 (Azg1) and AT5G50300 (Azg2).	Xanthine/uracil permease family protein;(source:Araport11)
AT5G50220.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G50230.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	autophagy-related (ATG) gene	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G50240.1	protein_coding	protein-l-isoaspartate methyltransferase 2	L-isoaspartyl methyltransferase 2 (PIMT2)gene,  alternatively spliced.	protein-l-isoaspartate methyltransferase 2;(source:Araport11)
AT5G49580.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G49500.1	protein_coding	Signal recognition particle, SRP54 subunit protein		Signal recognition particle, SRP54 subunit protein;(source:Araport11)
AT5G49590.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G49510.1	protein_coding	prefoldin 3		prefoldin 3;(source:Araport11)
AT5G49600.1	protein_coding	Protein of unknown function, DUF538		plant/protein (Protein of unknown function, DUF538);(source:Araport11)
AT5G49520.1	protein_coding	WRKY DNA-binding protein 48	Encodes WRKY48, a member of the WRKY Transcription Factor. WRKY48 is a stress- and pathogen-induced transcriptional activator that represses plant basal defense. The mRNA is cell-to-cell mobile.	WRKY DNA-binding protein 48;(source:Araport11)
AT5G49610.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G49530.1	protein_coding	SIN-like family protein		SIN-like family protein;(source:Araport11)
AT5G49620.1	protein_coding	myb domain protein 78	Member of the R2R3 factor gene family.	myb domain protein 78;(source:Araport11)
AT5G49540.1	protein_coding	Rab5-interacting family protein		Rab5-interacting family protein;(source:Araport11)
AT5G49550.1	protein_coding		Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.	biogenesis of lysosome organelles complex 1 subunit-like protein;(source:Araport11)
AT5G49560.1	protein_coding	Putative methyltransferase family protein		Putative methyltransferase family protein;(source:Araport11)
AT5G49570.1	protein_coding	peptide-N-glycanase 1	Encodes a protein that has peptide:N-glycanase activity in enzymatic assay in heterologous systems (although the activity was not detected in wild-type plants).	peptide-N-glycanase 1;(source:Araport11)
AT5G49490.1	protein_coding	AGAMOUS-like 83		AGAMOUS-like 83;(source:Araport11)
AT5G53840.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G50810.1	protein_coding	translocase inner membrane subunit 8	Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus.	translocase inner membrane subunit 8;(source:Araport11)
AT5G50820.1	protein_coding	NAC domain containing protein 97		NAC domain containing protein 97;(source:Araport11)
AT5G50830.1	protein_coding			nuclear polyadenylated RNA-binding protein;(source:Araport11)
AT5G50840.1	protein_coding			alpha-taxilin-like protein;(source:Araport11)
AT5G49440.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G49450.1	protein_coding	basic leucine-zipper 1	Encodes a transcription activator is a positive regulator of plant tolerance to salt, osmotic and drought stresses.	basic leucine-zipper 1;(source:Araport11)
AT5G49460.1	protein_coding	ATP citrate lyase subunit B 2	One of the two genes encoding subunit B of the cytosolic enzyme ATP Citrate Lyase (ACL)	ATP citrate lyase subunit B 2;(source:Araport11)
AT5G49470.1	protein_coding	PAS domain-containing protein tyrosine kinase family protein	Encodes a protein with similarity to RAF MAP Kinase that is expressed in most plant tissues. Based on loss of function and gain of function phenotypes, RAF10 appears to be involved in ABA response.	PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT5G49390.1	protein_coding			serine/threonine-protein phosphatase 4 regulatory subunit-like protein;(source:Araport11)
AT5G49400.1	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT5G49410.1	protein_coding			thiamine-phosphate synthase;(source:Araport11)
AT5G49420.1	protein_coding	MADS-box transcription factor family protein		MADS-box transcription factor family protein;(source:Araport11)
AT5G49430.1	protein_coding	WD40/YVTN repeat-like-containing domain;Bromodomain		WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein;(source:Araport11)
AT5G67030.1	protein_coding	zeaxanthin epoxidase (ZEP) (ABA1)	Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.	zeaxanthin epoxidase (ZEP) (ABA1);(source:Araport11)
AT5G67040.1	protein_coding	Protein of unknown function (DUF295)		F-box protein, putative (DUF295);(source:Araport11)
AT5G66960.1	protein_coding	Prolyl oligopeptidase family protein		Prolyl oligopeptidase family protein;(source:Araport11)
AT5G66970.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G66980.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G66990.1	protein_coding	RWP-RK domain-containing protein		RWP-RK domain-containing protein;(source:Araport11)
AT5G67000.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G67010.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G67020.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G67430.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT5G67350.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G67440.1	protein_coding	Phototropic-responsive NPH3 family protein	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590).  Involved in auxin-mediated organogenesis.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G67360.1	protein_coding	Subtilase family protein	Encodes a subtilisin-like serine protease essential for mucilage release from seed coats.	Subtilase family protein;(source:Araport11)
AT5G67450.1	protein_coding	zinc-finger protein 1	Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.	zinc-finger protein 1;(source:Araport11)
AT5G67370.1	protein_coding	Protein of unknown function (DUF1230)		DUF1230 family protein (DUF1230);(source:Araport11)
AT5G67380.1	protein_coding	casein kinase alpha 1	Casein kinase II (CK2) catalytic subunit (alpha 1). One known substrate of CK2 is Phytochrome Interacting Factor 1 (PIF1). CK2-mediated phosphorylation enhances the light-induced degradation of PIF1 to promote photomorphogenesis.	casein kinase alpha 1;(source:Araport11)
AT5G67390.1	protein_coding			glycosyltransferase-like protein;(source:Araport11)
AT5G67400.1	protein_coding	root hair specific 19		root hair specific 19;(source:Araport11)
AT5G67320.1	protein_coding	WD-40 repeat family protein	Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.	WD-40 repeat family protein;(source:Araport11)
AT5G67410.1	protein_coding			transcriptional regulator of RNA polII, SAGA, subunit;(source:Araport11)
AT5G67330.1	protein_coding	natural resistance associated macrophage protein 4	Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination. The mRNA is cell-to-cell mobile.	natural resistance associated macrophage protein 4;(source:Araport11)
AT5G67420.1	protein_coding	LOB domain-containing protein 37	Encodes a LOB-domain protein involved in nitrogen metabolism and affecting leaf morphogenesis.	LOB domain-containing protein 37;(source:Araport11)
AT5G67340.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G43660.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G43580.1	protein_coding	Serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Functions in resistance to necrotrophic fungi and insect herbivory. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	Serine protease inhibitor, potato inhibitor I-type family protein;(source:Araport11)
AT5G43590.1	protein_coding	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein		Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein;(source:Araport11)
AT5G43600.1	protein_coding	ureidoglycolate amidohydrolase	Encodes a protein with ureidoglycolate amidohydrolase activity in vitro. It is 27% identical and 43% similar to the E. coli allantoate amidohydrolase (AAH), but, in vitro assays with purified protein and allantoate as a substrate do not show any increase in ammonium concentration, indicating that there this enzyme has no AAH activity. The mRNA is cell-to-cell mobile.	ureidoglycolate amidohydrolase;(source:Araport11)
AT5G43520.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G43610.1	protein_coding	sucrose-proton symporter 6		sucrose-proton symporter 6;(source:Araport11)
AT5G43530.1	protein_coding	Helicase protein with RING/U-box domain		Helicase protein with RING/U-box domain-containing protein;(source:Araport11)
AT5G43620.1	protein_coding	Pre-mRNA cleavage complex II		Pre-mRNA cleavage complex II;(source:Araport11)
AT5G43540.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G43630.1	protein_coding	zinc knuckle (CCHC-type) family protein	Encodes a zinc knuckle protein that negatively regulates morning specific growth. The role of TZP in hypocotyl elongation was established through a QTL analysis of BayXSha RIL populations. The Bay-0 allele contains a deletion causing a frameshift mutation. TZP is under circadian control and acts to regulate morning-specific hypocotyl growth. The mRNA is cell-to-cell mobile.	zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT5G43550.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G43640.1	protein_coding	Ribosomal protein S19 family protein		Ribosomal protein S19 family protein;(source:Araport11)
AT5G43560.1	protein_coding	TRAF-like superfamily protein	Encodes MUSE14, a TRAF domain protein. Regulates the turnover of nucleotide-binding domain and leucine-rich repeat-containing (NLR) immune receptors SNC1 and RPS2. Loss of both MUSE13 and MUSE14 leads to enhanced pathogen resistance, NLR accumulation, and autoimmunity. In addition, MUSE13/14 physically interact with ATG6 and appear to regulate ATG6 ubiquitination and thus formation of autophagosomes.	TRAF-like superfamily protein;(source:Araport11)
AT5G43650.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G43570.1	protein_coding	Serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family.  Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	Serine protease inhibitor, potato inhibitor I-type family protein;(source:Araport11)
AT5G45300.1	protein_coding	beta-amylase 2	Encodes a beta-amylase-like protein present in the nucleus rather than targeted to the chloroplast. Contains BRASSINAZOLE RESISTANT1 (BZR1)-type DNA binding domains.  Activates gene expression in protoplast transactivation assays.	beta-amylase 2;(source:Araport11)
AT5G45310.1	protein_coding			coiled-coil protein;(source:Araport11)
AT5G45320.1	protein_coding			late embryogenesis abundant protein;(source:Araport11)
AT5G45330.1	protein_coding	decapping 5-like		decapping 5-like protein;(source:Araport11)
AT5G45340.1	protein_coding	cytochrome P450, family 707, subfamily A, polypeptide 3	Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor).	cytochrome P450, family 707, subfamily A, polypeptide 3;(source:Araport11)
AT5G45260.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class)	Confers resistance to Ralstonia solanacearum. Similar to NBLS-TIR resistance genes,and also contains similarity to transcription factors. Interacts with pathogen effector protein AvrPop2.	Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G45280.1	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT5G45290.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G63370.1	protein_coding	Protein kinase superfamily protein	CDKG1 interacts with the splicing factor RSZ33 to regulate proper splicing of Cals5 Pre-mRNA.	Protein kinase superfamily protein;(source:Araport11)
AT5G63380.1	protein_coding	AMP-dependent synthetase and ligase family protein	Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal &#946;-oxidation steps of jasmonic acid biosynthesis.	AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT5G67550.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G67480.1	protein_coding	BTB and TAZ domain protein 4	BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.	BTB and TAZ domain protein 4;(source:Araport11)
AT5G67560.1	protein_coding	ADP-ribosylation factor-like A1D	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Possible pseudogene because it lacks an N-terminal part that is conserved among the other ARL8 proteins. The mRNA is cell-to-cell mobile.	ADP-ribosylation factor-like A1D;(source:Araport11)
AT5G67490.1	protein_coding		SDHAF4 acts on FAD-SDH1 and promotes its assembly with SDH2, thereby stabilizing SDH2 and enabling its full assembly with SDH3/SDH4 to form the SDH complex.	succinate dehydrogenase assembly factor;(source:Araport11)
AT5G67570.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a pentratricopeptide repeat containing protein that is targeted to the chloroplast. Mutants have pale young leave and reduced accumulation of plastid encoded transcripts suggesting a role for DG1 in regulation of plastid gene expression.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G67500.1	protein_coding	voltage dependent anion channel 2	Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol. The mRNA is cell-to-cell mobile.	voltage dependent anion channel 2;(source:Araport11)
AT5G67580.1	protein_coding	Homeodomain-like/winged-helix DNA-binding family protein	Encodes a telomeric DNA binding protein and Single Myb Histone (SMH) gene family member. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.	Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
AT5G67510.1	protein_coding	Translation protein SH3-like family protein		Translation protein SH3-like family protein;(source:Araport11)
AT5G67590.1	protein_coding	NADH-ubiquinone oxidoreductase-related	Mutant leaves have a reduced capacity for cold acclimation, appear water-soaked, leak electrolytes, and accumulate reactive oxygen species constitutively. Encode a protein with high similarity to the 18-kD Fe-S subunit of complex I (NADH dehydrogenase, EC 1.6.5.3) in the mitochondrial electron transfer chain. The mRNA is cell-to-cell mobile.	NADH-ubiquinone oxidoreductase-like protein;(source:Araport11)
AT5G67520.1	protein_coding	adenosine-5'-phosphosulfate (APS) kinase 4	Provides activated sulfate for the  sulfation of secondary metabolites, including the glucosinolates. Redundant with APK3.	adenosine-5-phosphosulfate (APS) kinase 4;(source:Araport11)
AT5G67600.1	protein_coding			cysteine-rich TM module stress tolerance protein;(source:Araport11)
AT5G67530.1	protein_coding	plant U-box 49		plant U-box 49;(source:Araport11)
AT5G67610.1	protein_coding	Uncharacterized conserved protein (DUF2215)	Encodes an orthlog of the Xenopus inner nuclear membrane (INM) protein Nemp1/TMEM194A.	transmembrane protein (DUF2215);(source:Araport11)
AT5G67540.1	protein_coding	Arabinanase/levansucrase/invertase		Arabinanase/levansucrase/invertase;(source:Araport11)
AT5G67620.1	protein_coding			DUF4228 domain protein;(source:Araport11)
AT5G67630.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G67640.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G44350.1	protein_coding	ethylene-responsive nuclear protein -related		ethylene-responsive nuclear protein-like protein;(source:Araport11)
AT5G44360.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT5G44280.1	protein_coding	RING 1A	Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.	RING 1A;(source:Araport11)
AT5G44370.1	protein_coding	phosphate transporter 4;6	Encodes an inorganic phosphate transporter (PHT4;6).	phosphate transporter 4;(source:Araport11)
AT5G44290.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G44380.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT5G44300.1	protein_coding	Dormancy/auxin associated family protein		Dormancy/auxin associated family protein;(source:Araport11)
AT5G44390.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT5G44310.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT5G44400.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT5G44320.1	protein_coding	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)		Eukaryotic translation initiation factor 3 subunit 7 (eIF-3);(source:Araport11)
AT5G44330.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G44340.1	protein_coding	tubulin beta chain 4	beta tubulin gene	tubulin beta chain 4;(source:Araport11)
AT5G49960.1	protein_coding			ion channel protein;(source:Araport11)
AT5G49880.1	protein_coding	mitotic checkpoint family protein	Encodes a spindle assembly checkpoint protein MAD1. The mRNA is cell-to-cell mobile.	mitotic checkpoint family protein;(source:Araport11)
AT5G49890.1	protein_coding	chloride channel C	member of Anion channel protein family	chloride channel C;(source:Araport11)
AT5G49970.1	protein_coding	pyridoxin (pyrodoxamine) 5'-phosphate oxidase	encodes the bifunctional pyridoxine (pyridoxamine) 5?-phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group). NAD(P)HX epimerase (AT5G49970) interconverts the two epimers of NAD(P)HX.	pyridoxin (pyrodoxamine) 5-phosphate oxidase;(source:Araport11)
AT5G49900.1	protein_coding	Beta-glucosidase, GBA2 type family protein		Beta-glucosidase, GBA2 type family protein;(source:Araport11)
AT5G49980.1	protein_coding	auxin F-box protein 5		auxin F-box protein 5;(source:Araport11)
AT5G49990.1	protein_coding	Xanthine/uracil permease family protein		Xanthine/uracil permease family protein;(source:Araport11)
AT5G49910.1	protein_coding	chloroplast heat shock protein 70-2	Stromal heat shock protein involved in protein import into chloroplast. The mRNA is cell-to-cell mobile.	chloroplast heat shock protein 70-2;(source:Araport11)
AT5G49920.1	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT5G49930.1	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT5G49940.1	protein_coding	NIFU-like protein 2	Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.	NIFU-like protein 2;(source:Araport11)
AT5G49950.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G36200.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G36120.1	protein_coding	cofactor assembly, complex C (B6F)	One of four Arabidopsis homologs of bacterial ymlg proteins.	cofactor assembly, complex C (B6F);(source:Araport11)
AT5G36130.1	protein_coding	Cytochrome P450 superfamily protein		Cytochrome P450 superfamily protein;(source:Araport11)
AT5G36140.1	protein_coding	cytochrome P450, family 716, subfamily A, polypeptide 2	Encodes a member of the CYP716A subfamily of cytochrome P450 monooxygenases with triterpene oxidizing activity catalyzing C-28 hydroxylation of alpha-amyrin, beta-amyrin, and lupeol, producing uvaol, erythrodiol, and betulin, respectively.In particular, 22alpha-hydroxylation activity has been observed against alpha-amyrin.  Should be merged with At5g36130.	cytochrome P450, family 716, subfamily A, polypeptide 2;(source:Araport11)
AT5G36150.1	protein_coding	putative pentacyclic triterpene synthase 3		putative pentacyclic triterpene synthase 3;(source:Araport11)
AT5G36160.1	protein_coding	Tyrosine transaminase family protein	Encodes a cytosolic L-tyrosine aminotransferase. AtTAT2 exhibits much broader amino donor specificity than AtTAT1 and can use not only Tyr but also Phe, Trp, His, Met, Leu, Ala, Ser, Cys, Asp, Asn, Gln, and Arg as amino donors.	Tyrosine transaminase family protein;(source:Araport11)
AT5G36080.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT5G36170.1	protein_coding	high chlorophyll fluorescent 109	Required for normal processing of polycistronic plastidial transcripts	high chlorophyll fluorescent 109;(source:Araport11)
AT5G36090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28010.1);(source:TAIR10)
AT5G36180.1	protein_coding	serine carboxypeptidase-like 1		serine carboxypeptidase-like 1;(source:Araport11)
AT5G36100.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G36190.1	protein_coding			F-box protein interaction domain protein;(source:Araport11)
AT5G36110.1	protein_coding	cytochrome P450, family 716, subfamily A, polypeptide 1	Encodes a member of the CYP716A subfamily of cytochrome P450 monooxygenases with triterpene oxidizing activity catalyzing C-28 hydroxylation of alpha-amyrin, beta-amyrin, and lupeol, producing uvaol, erythrodiol, and betulin, respectively. Additionally, it shows carboxylation activity for the C-28 position of alpha- and beta-amyrin.	cytochrome P450, family 716, subfamily A, polypeptide 1;(source:Araport11)
AT5G13890.1	protein_coding	Family of unknown function (DUF716) 		plant viral-response family protein (DUF716);(source:Araport11)
AT5G13820.1	protein_coding	telomeric DNA binding protein 1	Encodes a protein that specifically binds plant telomeric DNA  repeats. It has a single Myb telomeric DNA-binding (SANT) domain in C-terminus that prefers the sequence TTTAGGG. Single Myb Histone (SMH) gene family member.	telomeric DNA binding protein 1;(source:Araport11)
AT5G13900.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G13990.1	protein_coding	exocyst subunit exo70 family protein C2	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  This particular member is expressed in pollen and is involved in pollen tube elongation. Found in the cytoplasm and surprisingly, not found in the plasma membrane and is not found to colocalize with or interact with core exocyst subunits.	exocyst subunit exo70 family protein C2;(source:Araport11)
AT5G13830.1	protein_coding	FtsJ-like methyltransferase family protein		FtsJ-like methyltransferase family protein;(source:Araport11)
AT5G13910.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE.  Acts as a positive regulator of gibberellic acid-induced germination.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G14000.1	protein_coding	NAC domain containing protein 84		NAC domain containing protein 84;(source:Araport11)
AT5G13840.1	protein_coding	FIZZY-related 3		FIZZY-related 3;(source:Araport11)
AT5G13920.1	protein_coding	GRF zinc finger / Zinc knuckle protein		GRF zinc finger / Zinc knuckle protein;(source:Araport11)
AT5G14010.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Encodes KNUCKLES (KNU), a C2H2-type zinc finger protein with a conserved transcriptional repression motif. Mediates the repression of WUS in floral meristem determinacy control.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G13850.1	protein_coding	nascent polypeptide-associated complex subunit alpha-like protein 3		nascent polypeptide-associated complex subunit alpha-like protein 3;(source:Araport11)
AT5G13930.1	protein_coding	Chalcone and stilbene synthase family protein	Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids.  Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism. The mRNA is cell-to-cell mobile.	Chalcone and stilbene synthase family protein;(source:Araport11)
AT5G14020.1	protein_coding	Endosomal targeting BRO1-like domain-containing protein		Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT5G13940.1	protein_coding	aminopeptidases		aminopeptidase;(source:Araport11)
AT5G13860.1	protein_coding	ELCH-like		ELCH-like protein;(source:Araport11)
AT5G13870.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 5	EXGT-A4, endoxyloglucan transferase,	xyloglucan endotransglucosylase/hydrolase 5;(source:Araport11)
AT5G13950.1	protein_coding			nuclear factor kappa-B-binding protein;(source:Araport11)
AT5G13880.1	protein_coding			cotton fiber protein;(source:Araport11)
AT5G13960.1	protein_coding	SU(VAR)3-9 homolog 4	Encodes a histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation. SUVH4/KYP is a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. In kyp mutants, there is a loss of CpNpG methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the latter two. There is also evidence that KYP/SUVH4 might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein;(source:Araport11)
AT5G13970.1	protein_coding			midasin-like protein;(source:Araport11)
AT5G13980.1	protein_coding	Glycosyl hydrolase family 38 protein		Glycosyl hydrolase family 38 protein;(source:Araport11)
AT5G61810.1	protein_coding	Mitochondrial substrate carrier family protein	Encodes the predominant of three APC isoforms in Arabidopsis, a calcium-dependent mitochondrial ATP-Mg/Pi transporter.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G61730.1	protein_coding	ABC2 homolog 11	Encodes an ER-localized ABC transporter with a role in the supply of fatty acid substrates for TAG biosynthesis at the ER during the seed-filling stage.	ABC2 homolog 11;(source:Araport11)
AT5G61820.1	protein_coding			stress up-regulated Nod 19 protein;(source:Araport11)
AT5G61740.1	protein_coding	ABC2 homolog 14		ABC2 homolog 14;(source:Araport11)
AT5G61830.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G61750.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G61840.1	protein_coding	Exostosin family protein	Encodes a UDP-Xyl:beta-(1,4)-xylosyl transferase.	Exostosin family protein;(source:Araport11)
AT5G61760.1	protein_coding	inositol polyphosphate kinase 2 beta	Encodes an inositol polyphosphate 3-/6-/5-kinase that is localized to the nucleus. Able to complement a mutation in a yeast transcriptional regulator gene (ARG82/IPK2).  Acts redundantly with ATIPK2alpha during pollen   development, pollen tube guidance and embryogenesis.	inositol polyphosphate kinase 2 beta;(source:Araport11)
AT5G61850.1	protein_coding	floral meristem identity control protein LEAFY (LFY)	Encodes transcriptional regulator that promotes the transition to flowering.Involved in floral meristem development. LFY is involved in the regulation of AP3 expression, and appears to bring the F-box protein UFO to the AP3 promoter.  Amino acids 46-120 define a protein domain that mediates self-interaction.	floral meristem identity control protein LEAFY (LFY);(source:Araport11)
AT5G61770.1	protein_coding	PETER PAN-like protein	A single-copy gene  encoding a 346 aa protein with a single Brix domain. Similar to yeast ribosome biogenesis proteins Ssf1/2.	PETER PAN-like protein;(source:Araport11)
AT5G61780.1	protein_coding	TUDOR-SN protein 2	Involved in the regulation of  AtGA20ox3 expression, as well as seed germination. The mRNA is cell-to-cell mobile.	TUDOR-SN protein 2;(source:Araport11)
AT5G61790.1	protein_coding	calnexin 1		calnexin 1;(source:Araport11)
AT5G61880.1	protein_coding	Protein Transporter, Pam16	Encodes PAM16L, a paralog of PAM16 (AT3G59280).	Protein Transporter, Pam16;(source:Araport11)
AT5G61800.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G60850.1	protein_coding	OBF binding protein 4	Encodes a zinc finger protein.	OBF binding protein 4;(source:Araport11)
AT5G60770.1	protein_coding	nitrate transporter 2.4	member of High affinity nitrate transporter family	nitrate transporter 2.4;(source:Araport11)
AT5G60860.1	protein_coding	RAB GTPase homolog A1F		RAB GTPase homolog A1F;(source:Araport11)
AT5G60780.1	protein_coding	nitrate transporter 2.3	member of High affinity nitrate transporter family	nitrate transporter 2.3;(source:Araport11)
AT5G60870.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein	Encodes a mitochondrial protein RUG3 that is required for accumulation of mitochondrial respiratory chain complex I. RUG3 is related to human REGULATOR OF CHROMOSOME CONDENSATION 1 (RCC1) and Arabidopsis UV-B RESISTANCE 8 (UVR8).	Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT5G60790.1	protein_coding	ABC transporter family protein	member of GCN subfamily	ABC transporter family protein;(source:Araport11)
AT5G60880.1	protein_coding	breaking of asymmetry in the stomatal lineage	Encodes BASL (BREAKING OF ASYMMETRY IN THE STOMATAL LINEAGE), a regulator of asymmetric divisions. In asymmetrically dividing stomatal-lineage cells, BASL accumulates in a polarized crescent at the cell periphery before division, and then localizes differentially to the nucleus and a peripheral crescent in self-renewing cells and their sisters after division. Its transcript levels change after inducing MUTE expression in a mute background.	breaking of asymmetry in the stomatal lineage;(source:Araport11)
AT5G60800.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G60810.1	protein_coding	root meristem growth factor 1	Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor 1;(source:Araport11)
AT5G60820.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G60830.1	protein_coding	basic leucine-zipper 70		basic leucine-zipper 70;(source:Araport11)
AT5G60840.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G61190.1	protein_coding	putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain		putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein;(source:Araport11)
AT5G61100.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G61030.1	protein_coding	glycine-rich RNA-binding protein 3	Encodes a glycine-rich RNA binding protein that is involved in C-> U RNA editing in mitochondria. Gene expression is induced by cold. The mRNA is cell-to-cell mobile.	glycine-rich RNA-binding protein 3;(source:Araport11)
AT5G61110.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT5G61200.1	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT5G61040.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G61120.1	protein_coding			zinc ion-binding protein;(source:Araport11)
AT5G61210.1	protein_coding	soluble N-ethylmaleimide-sensitive factor adaptor protein 33	membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formation The mRNA is cell-to-cell mobile.	soluble N-ethylmaleimide-sensitive factor adaptor protein 33;(source:Araport11)
AT5G61050.1	protein_coding	histone deacetylase-related / HD-related		histone deacetylase-related / HD-like protein;(source:Araport11)
AT5G61130.1	protein_coding	plasmodesmata callose-binding protein 1	Encodes a plasmodesmatal localized protein with callose binding activity. The function of PDCB1 is unknown but overexpression leads to the hyperaccumulation of callose.	plasmodesmata callose-binding protein 1;(source:Araport11)
AT5G61220.1	protein_coding	LYR family of Fe/S cluster biogenesis protein		LYR family of Fe/S cluster biogenesis protein;(source:Araport11)
AT5G61060.1	protein_coding	histone deacetylase 5	Encodes a member of the histone deacetylase family.	histone deacetylase 5;(source:Araport11)
AT5G61140.1	protein_coding	U5 small nuclear ribonucleoprotein helicase	Encodes a predicted protein with 30% identity with MER3/RCK. Similar to yast Brr2p DEAD/DExH box ATP-dependent RNA helicase.	U5 small nuclear ribonucleoprotein helicase;(source:Araport11)
AT5G61230.1	protein_coding	Ankyrin repeat family protein	Encodes ANK6, a mitochondrial ankyrin repeat protein required for male-female gamete recognition.	Ankyrin repeat family protein;(source:Araport11)
AT5G61070.1	protein_coding	histone deacetylase of the RPD3/HDA1 superfamily 18	Encodes a protein with similarity to histone deacetylases, a class of chromatin remodeling factors which act on H3/H4 histones. Expressed in roots where it appears to regulate the expression of epidermal cell fate genes controlling hair cell differentiation.	histone deacetylase of the RPD3/HDA1 superfamily 18;(source:Araport11)
AT5G61150.1	protein_coding	leo1-like family protein	Encodes highly hydrophilic protein involved in positively regulating FLC expression.  Mutants are early flowering and show a loss of FLC expression in the absence of cold. Member of PAF-C complex.	leo1-like family protein;(source:Araport11)
AT5G61160.1	protein_coding	anthocyanin 5-aromatic acyltransferase 1		anthocyanin 5-aromatic acyltransferase 1;(source:Araport11)
AT5G61090.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G61170.1	protein_coding	Ribosomal protein S19e family protein		Ribosomal protein S19e family protein;(source:Araport11)
AT5G61180.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT5G08610.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G08530.1	protein_coding	51 kDa subunit of complex I		51 kDa subunit of complex I;(source:Araport11)
AT5G08620.1	protein_coding	DEA(D/H)-box RNA helicase family protein	Similar in sequence to DEAD-box RNA helicases. Binds RNA. Involved in drought, salt and cold stress responses.	DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT5G08540.1	protein_coding			ribosomal RNA small subunit methyltransferase J;(source:Araport11)
AT5G08630.1	protein_coding	DDT domain-containing protein		DDT domain-containing protein;(source:Araport11)
AT5G08550.1	protein_coding	GC-rich sequence DNA-binding factor-like protein	Encodes a transcriptional repressor that is  homologous to the C-terminal region of mammalian GC binding factor.  It regulates endoreduplication through control of CYC2A expression.	GC-rich sequence DNA-binding factor-like protein;(source:Araport11)
AT5G08560.1	protein_coding	transducin family protein / WD-40 repeat family protein	WRDR26 is a WD-40 repeat containing protein initially identified as an interacting partner RanBPM. Its expression is induced by abiotic stress as well as various plant growth regulators including IAA, ABA and ethylene. Role as a novel modulator of redox homeostatis, responding to developmental and stress signals to regulate leaf senescence.	transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G08570.1	protein_coding	Pyruvate kinase family protein		Pyruvate kinase family protein;(source:Araport11)
AT5G08580.1	protein_coding	Calcium-binding EF hand family protein		Calcium-binding EF hand family protein;(source:Araport11)
AT5G08590.1	protein_coding	SNF1-related protein kinase 2.1	Encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily.	SNF1-related protein kinase 2.1;(source:Araport11)
AT5G08600.1	protein_coding	U3 ribonucleoprotein (Utp) family protein		U3 ribonucleoprotein (Utp) family protein;(source:Araport11)
AT5G10650.1	protein_coding	RING/U-box superfamily protein	JUL1 encode a RING-type E3 ubiquitin ligase that is involved in JA responses. It ubiquitinates the JAV1 jasmonic acid response repressor which is then degraded by the proteosome.	RING/U-box superfamily protein;(source:Araport11)
AT5G10660.1	protein_coding	calmodulin-binding protein-related		calmodulin-binding protein-like protein;(source:Araport11)
AT5G10670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28240.1);(source:TAIR10)
AT5G10680.1	protein_coding	calmodulin-binding protein-related		calmodulin-binding protein-like protein;(source:Araport11)
AT5G10690.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein		pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein;(source:Araport11)
AT5G10700.1	protein_coding	Peptidyl-tRNA hydrolase II (PTH2) family protein		Peptidyl-tRNA hydrolase II (PTH2) family protein;(source:Araport11)
AT5G10710.1	protein_coding			centromere protein O;(source:Araport11)
AT5G10720.1	protein_coding	histidine kinase 5	member of Histidine Kinase	histidine kinase 5;(source:Araport11)
AT5G10730.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G50550.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G50560.1	protein_coding	Protein of unknown function (DUF 3339)		transmembrane protein, putative (DUF 3339);(source:Araport11)
AT5G50570.1	protein_coding	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein		Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein;(source:Araport11)
AT5G50490.1	protein_coding	nuclear factor Y, subunit C5		nuclear factor Y, subunit C5;(source:Araport11)
AT5G50580.1	protein_coding	SUMO-activating enzyme 1B	Encodes one of the two subunits of the SUMO activation enzyme required during sumolation.  Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.	SUMO-activating enzyme 1B;(source:Araport11)
AT5G50500.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G50590.1	protein_coding	hydroxysteroid dehydrogenase 4	Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include:   At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463).  Two copies of HSD1 and HSD4 exist due to a gene duplication event.  In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.	hydroxysteroid dehydrogenase 4;(source:Araport11)
AT5G50510.1	protein_coding	Molecular chaperone Hsp40/DnaJ family protein		Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT5G50600.1	protein_coding	hydroxysteroid dehydrogenase 1	Encodes a hydroxysteroid dehydrogenase shown to act as a NADP+-dependent 11&beta;-,17&beta;-hydroxysteroid dehydrogenase/17&beta;-ketosteroid reductase called HSD1.  Two copies of HSD1 (At5g50600 and At5g50700) exist in the Arabidopsis genome as a result of an exact 33-kb duplication on chromosome 5 encompassing seven genes.  There are five homologs of HSD1 in Arabidopsis (HSD2-At3g47350, HSD3-At3g47360, HSD4-At5g50590, HSD4-At5g50690 and HSD6-At5g50770; HSD4 has two copies due to the same gene duplication event occurred to HSD1) (Plant Cell Physiology 50:1463). At5g50690 is also named as HSD7 (Plant Physiology 145:87).  HSD1 is identified from the proteome of oil bodies from mature seeds.  Transcription of HSD1 is specifically and highly induced in oil-accumulating tissues of mature seeds; transcript disappears during germination. To date, the endogenous substrates of this enzyme are not known.	hydroxysteroid dehydrogenase 1;(source:Araport11)
AT5G50520.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G50610.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G50530.1	protein_coding	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein		CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein;(source:Araport11)
AT5G50540.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G38590.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G38680.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G38600.1	protein_coding	Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein		Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT5G38520.1	protein_coding	alpha/beta-Hydrolases superfamily protein	CLD1 is involved in steady-state chlorophyll turnover; CLD1 dephytylates chlorophyll a, chlorophyll b, and pheophytin a in vitro; CLD1 and CHLG form a salvage cycle in recycling chlorophyll. Suppression of CLD1 expression results in reduced tolerance to moderately high temperature.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G38690.1	protein_coding	Zinc-finger domain of monoamine-oxidase A repressor R1 protein		Zinc-finger domain of monoamine-oxidase A repressor R1 protein;(source:Araport11)
AT5G38610.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G38530.1	protein_coding	tryptophan synthase beta type 2	TSBtype2 encodes a type 2 tryptophan synthase beta subunit that catalyzes a condensation reaction between serine and indole to generate tryptophan.It appears to form a homodimer. Its biological role has not yet been determined, but it has a very high affinity for indole which may be involved in allowing TSBtype2 to carefully limit free indole build-up. But, to date no overall change in plant morphology or seedling root growth have been observed in tsbtype2 mutants, indicating that this gene is not essential under optimum conditions. n most organs, TSBtype2 is transcripts are expressed at a lower level than TSB1 but in dry seeds they are expressed at comparable levels.	tryptophan synthase beta type 2;(source:Araport11)
AT5G38700.1	protein_coding			cotton fiber protein;(source:Araport11)
AT5G38620.1	protein_coding	MADS-box transcription factor family protein		MADS-box transcription factor family protein;(source:Araport11)
AT5G38540.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT5G38630.1	protein_coding	cytochrome B561-1	Encodes for cytochrome b561.	cytochrome B561-1;(source:Araport11)
AT5G38550.1	protein_coding	Mannose-binding lectin superfamily protein	Jacalin lectin family protein gene	Mannose-binding lectin superfamily protein;(source:Araport11)
AT5G38640.1	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein		NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT5G38560.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT5G38650.1	protein_coding	Proteasome maturation factor UMP1		Proteasome maturation factor UMP1;(source:Araport11)
AT5G38570.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G38660.1	protein_coding	acclimation of photosynthesis to  environment	mutant has Altered acclimation responses;	acclimation of photosynthesis to environment;(source:Araport11)
AT5G38670.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G38580.1	protein_coding	FBD-like domain family protein		FBD-like domain family protein;(source:Araport11)
AT5G42970.1	protein_coding	Proteasome component (PCI) domain protein	encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis.	Proteasome component (PCI) domain protein;(source:Araport11)
AT5G42890.1	protein_coding	sterol carrier protein 2		sterol carrier protein 2;(source:Araport11)
AT5G42980.1	protein_coding	thioredoxin 3	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. The mRNA is cell-to-cell mobile.	thioredoxin 3;(source:Araport11)
AT5G42900.1	protein_coding	cold regulated gene 27		cold regulated protein 27;(source:Araport11)
AT5G42990.1	protein_coding	ubiquitin-conjugating enzyme 18		ubiquitin-conjugating enzyme 18;(source:Araport11)
AT5G42910.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT5G43000.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G43010.1	protein_coding	regulatory particle triple-A ATPase 4A	26S proteasome AAA-ATPase subunit RPT4a (RPT4a) mRNA,	regulatory particle triple-A ATPase 4A;(source:Araport11)
AT5G42920.1	protein_coding	THO complex,  subunit 5	Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	THO complex, subunit 5;(source:Araport11)
AT5G42840.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G42930.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G42850.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT5G42860.1	protein_coding		CC2 is a plant specific gene that interacts with  with the cellulose synthase complex and microtubules. It appears to play a role in localizing CESA to the membrane, microtuble dynamics , particularly during salt stress.	late embryogenesis abundant protein, group 2;(source:Araport11)
AT5G42940.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G42870.1	protein_coding	phosphatidic acid phosphohydrolase 2	The PAH2 gene encodes a phosphatidate phosphohydrolase. Mutant analysis revealed its involvement in galactolipid synthesis pathway, and the membrane lipid remodeling. The pah1pah2 double-mutant showed enhanced Al-susceptibility under low-P conditions, but there was no significant differences in Al tolerance between pah1pah2 and wild type when they were grown in a solution containing 35 &#956;M Pi.	phosphatidic acid phosphohydrolase 2;(source:Araport11)
AT5G42950.1	protein_coding	GYF domain-containing protein	EXA1 is a GYF domain-containing gene of the SMY2 subgroup. Mutants exhibit resistance to potexviruses.	GYF domain-containing protein;(source:Araport11)
AT5G42880.1	protein_coding	Plant protein of unknown function (DUF827)		WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827);(source:Araport11)
AT5G42960.1	protein_coding			outer envelope pore 24B-like protein;(source:Araport11)
AT5G54840.1	protein_coding	Ras-related small GTP-binding family protein	Monomeric G protein. Expressed in the root quiescent center, flowers, and leaf guard cells and hydathodes.	Ras-related small GTP-binding family protein;(source:Araport11)
AT5G54850.1	protein_coding			hexon;(source:Araport11)
AT5G54940.1	protein_coding	Translation initiation factor SUI1 family protein		Translation initiation factor SUI1 family protein;(source:Araport11)
AT5G54780.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT5G54860.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G54950.1	protein_coding	Aconitase family protein		Aconitase family protein;(source:Araport11)
AT5G54790.1	protein_coding			CTD small phosphatase-like protein;(source:Araport11)
AT5G54870.1	protein_coding			inositol-1,4,5-trisphosphate 5-phosphatase;(source:Araport11)
AT5G54960.1	protein_coding	pyruvate decarboxylase-2	pyruvate decarboxylase-2	pyruvate decarboxylase-2;(source:Araport11)
AT5G54800.1	protein_coding	glucose 6-phosphate/phosphate translocator 1	Encodes glucose6-Phosphate/phosphate transporter 1.  Essential for pollen maturation and embryo sac development. The mRNA is cell-to-cell mobile.	glucose 6-phosphate/phosphate translocator 1;(source:Araport11)
AT5G54880.1	protein_coding	DTW domain-containing protein		DTW domain-containing protein;(source:Araport11)
AT5G54970.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G54810.1	protein_coding	tryptophan synthase beta-subunit 1	A.thaliana tryptophan synthase beta subunit (trpB)	tryptophan synthase beta-subunit 1;(source:Araport11)
AT5G54890.1	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain-containing protein		RNA-binding CRS1 / YhbY (CRM) domain-containing protein;(source:Araport11)
AT5G54980.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT5G54820.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G54900.1	protein_coding	RNA-binding protein 45A		RNA-binding protein 45A;(source:Araport11)
AT5G54990.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G54830.1	protein_coding	DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein		DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein;(source:Araport11)
AT5G54910.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT5G55000.1	protein_coding	potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein	FH protein interacting protein FIP2	potassium channel tetramerization domain-containing protein / pentapeptide repeat-containing protein;(source:Araport11)
AT5G54920.1	protein_coding			polyadenylate-binding protein interacting protein;(source:Araport11)
AT5G54930.1	protein_coding	AT hook motif-containing protein		AT hook motif-containing protein;(source:Araport11)
AT5G07740.1	protein_coding	actin binding		actin binding protein;(source:Araport11)
AT5G07660.1	protein_coding	structural maintenance of chromosomes 6A	Encodes SMC6A (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6A), a component of the SMC5/6 complex.  SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.	structural maintenance of chromosomes 6A;(source:Araport11)
AT5G07760.1	protein_coding	formin homology 2 domain-containing protein / FH2 domain-containing protein		formin homology 2 domain-containing protein / FH2 domain-containing protein;(source:Araport11)
AT5G07590.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G07670.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT5G07600.1	protein_coding	Oleosin family protein		Oleosin family protein;(source:Araport11)
AT5G07680.1	protein_coding	NAC domain containing protein 80		NAC domain containing protein 80;(source:Araport11)
AT5G07770.1	protein_coding	Actin-binding FH2 protein		Actin-binding FH2 protein;(source:Araport11)
AT5G07610.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G07690.1	protein_coding	myb domain protein 29	Encodes a putative transcription factor (MYB29) that acts as a negative regulator of mitochondrial stress responses.	myb domain protein 29;(source:Araport11)
AT5G07620.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G07700.1	protein_coding	myb domain protein 76	Encodes a putative transcription factor (MYB76).	myb domain protein 76;(source:Araport11)
AT5G07630.1	protein_coding	lipid transporters		lipid transporter;(source:Araport11)
AT5G07710.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G07640.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G07720.1	protein_coding	Galactosyl transferase GMA12/MNN10 family protein		Galactosyl transferase GMA12/MNN10 family protein;(source:Araport11)
AT5G07650.1	protein_coding	Actin-binding FH2 protein		Actin-binding FH2 protein;(source:Araport11)
AT5G07730.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G41660.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G41580.1	protein_coding	RING/U-box superfamily protein	Encodes an SP-RING domain containing protein that functions in sumolaytion and is involved in positive regulation of sulfur metabolism and stress response.	RING/U-box superfamily protein;(source:Araport11)
AT5G41670.1	protein_coding	6-phosphogluconate dehydrogenase family protein		6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT5G41590.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT5G41680.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G41690.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G41600.1	protein_coding	VIRB2-interacting protein 3		VIRB2-interacting protein 3;(source:Araport11)
AT5G41610.1	protein_coding	cation/H+ exchanger 18	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 18;(source:Araport11)
AT5G41700.1	protein_coding	ubiquitin conjugating enzyme 8	One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 The mRNA is cell-to-cell mobile.	ubiquitin conjugating enzyme 8;(source:Araport11)
AT5G41540.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G41620.1	protein_coding			intracellular protein transporter USO1-like protein;(source:Araport11)
AT5G41710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 6.2e-18 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G41550.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G41630.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G41720.1	protein_coding			F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G41560.1	protein_coding		Encodes a substrate receptor for CRL4-CDD complexes that provides substrate specificity for CRL4 by interacting with ubiquitination targets. By its interaction and regulation of levels of PYL8 through proteasomal degradation, it negatively regulates ABA-mediated developmental responses, including inhibition of seed germination, seedling establishment, and root growth	DET1 complexing ubiquitin ligase;(source:Araport11)
AT5G41640.1	protein_coding	Protein of unknown function (DUF626)	Mutants have decreased tolerance to osmotic stress.	hypothetical protein (DUF626);(source:Araport11)
AT5G41570.1	protein_coding	WRKY DNA-binding protein 24	member of WRKY Transcription Factor; Group II-c	WRKY DNA-binding protein 24;(source:Araport11)
AT5G41650.1	protein_coding	Lactoylglutathione lyase / glyoxalase I family protein	Vicinal oxygen chelate (VOC) superfamily member. Responds to NaCl stress.	Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT5G63650.1	protein_coding	SNF1-related protein kinase 2.5	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.	SNF1-related protein kinase 2.5;(source:Araport11)
AT5G63660.1	protein_coding	Scorpion toxin-like knottin superfamily protein	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	Scorpion toxin-like knottin superfamily protein;(source:Araport11)
AT5G63750.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G63670.1	protein_coding	SPT4 homolog 2		SPT4 homolog 2;(source:Araport11)
AT5G63760.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G63590.1	protein_coding	flavonol synthase 3		flavonol synthase 3;(source:Araport11)
AT5G63600.1	protein_coding	flavonol synthase 5	encodes a protein whose sequence is similar to flavonol synthase	flavonol synthase 5;(source:Araport11)
AT5G63680.1	protein_coding	Pyruvate kinase family protein		Pyruvate kinase family protein;(source:Araport11)
AT5G63770.1	protein_coding	diacylglycerol kinase 2	a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold.	diacylglycerol kinase 2;(source:Araport11)
AT5G63610.1	protein_coding	cyclin-dependent kinase E;1	significant sequence similarity to plant and animal cyclin-dependent protein kinases, and was classified as an E-type CDK with a SPTAIRE cyclin binding motif in the kinase domain.	cyclin-dependent kinase E;(source:Araport11)
AT5G63690.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT5G63780.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein	Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance.  The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage.	RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G63620.1	protein_coding	GroES-like zinc-binding alcohol dehydrogenase family protein	Encodes an oxidoreductase involved in transducing the perception of E-2-hexenal, which changes the redox status of the mitochondria.	GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT5G63700.1	protein_coding	zinc ion binding;DNA binding		zinc ion binding / DNA binding protein;(source:Araport11)
AT5G63790.1	protein_coding	NAC domain containing protein 102	Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings.  Its expression can be induced by beta-cyclocitral, an oxidized   by-product of beta-carotene generated in the chloroplasts, mediates a protective retrograde response that lowers the levels of toxic peroxides and carbonyls, limiting damage to intracellular components.	NAC domain containing protein 102;(source:Araport11)
AT5G63630.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G63710.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G63800.1	protein_coding	Glycosyl hydrolase family 35 protein	Involved in mucilage formation. Mutants form columella and outer cell wall architecture of the mucilage cells resembles wild-type. However, mum2 seeds completely lack seed coat mucilage. This mutation appears to represent a later step in the development of this cell-type. Encodes a beta-galactosidase involved in seed coat mucilage biosynthesis. Member of Glycoside Hydrolase Family 35	Glycosyl hydrolase family 35 protein;(source:Araport11)
AT5G63640.1	protein_coding	ENTH/VHS/GAT family protein		ENTH/VHS/GAT family protein;(source:Araport11)
AT5G63720.1	protein_coding	kokopelli	Encodes KOKOPELLI (KPL). kokopelli (kpl) mutants display frequent single-fertilization events indicating that KPL is involved in double fertilization. KPL and an inversely transcribed gene, ARIADNE14 (ARI14), which encodes a putative ubiquitin E3 ligase, generate a sperm-specific natural cis-antisense siRNA pair. In the absence of KPL, ARI14 RNA levels in sperm are increased and fertilization is impaired.	kokopelli;(source:Araport11)
AT5G63730.1	protein_coding	IBR domain-containing protein	Encodes ARIADNE14 (ARI14), a putative ubiquitin E3 ligase. ARI14 and an inversely transcribed gene KPL generate a sperm-specific natural cis-antisense siRNA pair. In the absence of KPL, ARI14 RNA levels in sperm are increased and fertilization is impaired.	IBR domain-containing protein;(source:Araport11)
AT5G63740.1	protein_coding	RING/U-box superfamily protein	A paternally expressed imprinted gene.	RING/U-box superfamily protein;(source:Araport11)
AT5G06230.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 9	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 9;(source:Araport11)
AT5G06240.1	protein_coding	embryo defective 2735		embryo defective 2735;(source:Araport11)
AT5G06170.1	protein_coding	sucrose-proton symporter 9	sucrose symporter with hight affinity for sucrose (K0.5=0.066 +/- 0.025mM), that can also transport a wide range of glucosides.	sucrose-proton symporter 9;(source:Araport11)
AT5G06180.1	protein_coding	Protein of unknown function (DUF1022)		fission ELM1-like protein (DUF1022);(source:Araport11)
AT5G06190.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G06200.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT5G06210.1	protein_coding	RNA binding (RRM/RBD/RNP motifs) family protein	Encodes a chloroplast protein involved in the responses to salt and oxidative stresses.	RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G06220.1	protein_coding	LETM1-like protein		LETM1-like protein;(source:Araport11)
AT5G64010.1	protein_coding			U2 small nuclear ribonucleoprotein auxiliary factor-like protein;(source:Araport11)
AT5G63930.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G64020.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 14	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 14;(source:Araport11)
AT5G63940.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT5G64030.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G63950.1	protein_coding	chromatin remodeling 24		chromatin remodeling 24;(source:Araport11)
AT5G63960.1	protein_coding	DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases	Encodes the catalytic subunits of DNA polymerase &#948;, which is involved in the deposition of epigenetic marks.	DNA polymerase delta subunit 1;(source:Araport11)
AT5G63970.1	protein_coding	Copine (Calcium-dependent phospholipid-binding protein) family	Encodes a ubiquitin ligase that is an essential upstream modulator of JA signaling in response to various stimuli.	Copine (Calcium-dependent phospholipid-binding protein) family;(source:Araport11)
AT5G63980.1	protein_coding	Inositol monophosphatase family protein	Encodes a bifunctional protein that has 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast.  It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration and increased levels of  3'-phosphoadenosine 5'-phosphate (PAP). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity. Its activity is sensitive to the redox state of its environment, decreasing under oxidative conditions and is regulated by dimerization and intra and inter-molecular disulfide bond formation.	SAL1 phosphatase-like protein;(source:Araport11)
AT5G63990.1	protein_coding	Inositol monophosphatase family protein		Inositol monophosphatase family protein;(source:Araport11)
AT5G64000.1	protein_coding	Inositol monophosphatase family protein	3'(2'),5'-bisphosphate nucleotidase	Inositol monophosphatase family protein;(source:Araport11)
AT5G47790.1	protein_coding	SMAD/FHA domain-containing protein 		SMAD/FHA domain-containing protein;(source:Araport11)
AT5G47800.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G47890.1	protein_coding	NADH-ubiquinone oxidoreductase B8 subunit, putative		NADH-ubiquinone oxidoreductase B8 subunit;(source:Araport11)
AT5G47720.1	protein_coding	Thiolase family protein	Encodes a functional acetoacetyl-CoA thiolase that is functionally redundant with AACT2.  Loss-of-function mutants show no apparent growth phenotypes.	Thiolase family protein;(source:Araport11)
AT5G47730.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G47810.1	protein_coding	phosphofructokinase 2		phosphofructokinase 2;(source:Araport11)
AT5G47900.1	protein_coding	Protein of unknown function (DUF1624)		heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G47740.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT5G47820.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfibrils and reduced mechanical strength of fibers.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G47910.1	protein_coding	respiratory burst oxidase homologue D	NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. The mRNA is cell-to-cell mobile.	respiratory burst oxidase homologue D;(source:Araport11)
AT5G47750.1	protein_coding	D6 protein kinase like 2	D6PK family kinase involved in pulse-induced phototropism and continuous light-induced hypocotyl phototropism, minor contribution to time-dependent phototropism.	D6 protein kinase like 2;(source:Araport11)
AT5G47830.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G47920.1	protein_coding			transcription elongation factor;(source:Araport11)
AT5G47760.1	protein_coding	2-phosphoglycolate phosphatase 2	serine/threonine protein kinase	2-phosphoglycolate phosphatase 2;(source:Araport11)
AT5G47840.1	protein_coding	adenosine monophosphate kinase		adenosine monophosphate kinase;(source:Araport11)
AT5G47770.1	protein_coding	farnesyl diphosphate synthase 1	Encodes a protein with farnesyl diphosphate synthase activity.	farnesyl diphosphate synthase 1;(source:Araport11)
AT5G47850.1	protein_coding	CRINKLY4 related 4		CRINKLY4 related 4;(source:Araport11)
AT5G47780.1	protein_coding	galacturonosyltransferase 4	Encodes a protein with  putative galacturonosyltransferase activity. The mRNA is cell-to-cell mobile.	galacturonosyltransferase 4;(source:Araport11)
AT5G47860.1	protein_coding	Protein of unknown function (DUF1350)		Gut esterase (DUF1350);(source:Araport11)
AT5G47870.1	protein_coding			cobalt ion-binding protein;(source:Araport11)
AT5G47880.1	protein_coding	eukaryotic release factor 1-1	Encodes a eukaryotic release factor 1 homolog.  Cosuppression of the gene's expression results affects cell elongation of the inflorescence stem, specifically the internodes, and radial cell division.  Expression of the protein is primarily observed in the vascular system and in actively growing and elongating zones.	eukaryotic release factor 1-1;(source:Araport11)
AT5G56300.1	protein_coding	gibberellic acid methyltransferase 2	A member of the Arabidopsis SABATH methyltransferase gene family.  Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs).  Expressed most highly in the siliques during seed development.	gibberellic acid methyltransferase 2;(source:Araport11)
AT5G56390.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G56310.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G56400.1	protein_coding	FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein		FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G56320.1	protein_coding	expansin A14	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A14;(source:Araport11)
AT5G56490.1	protein_coding	D-arabinono-1,4-lactone oxidase family protein		D-arabinono-1,4-lactone oxidase family protein;(source:Araport11)
AT5G56410.1	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT5G56330.1	protein_coding	alpha carbonic anhydrase 8		alpha carbonic anhydrase 8;(source:Araport11)
AT5G56500.1	protein_coding	TCP-1/cpn60 chaperonin family protein	Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins.  Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).	TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT5G56420.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G56340.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G56430.1	protein_coding	F-box/FBD-like domains containing protein		F-box/FBD-like domains containing protein;(source:Araport11)
AT5G56350.1	protein_coding	Pyruvate kinase family protein		Pyruvate kinase family protein;(source:Araport11)
AT5G56440.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G56360.1	protein_coding	calmodulin-binding protein	Encodes PSL4, beta-subunit of endoplasmic reticulum-resident glucosidase II, which is essential for stable accumulation and quality control of the elf18 receptor EFR but not the flg22 receptor FLS2. The mRNA is cell-to-cell mobile.	calmodulin-binding protein;(source:Araport11)
AT5G56450.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G56370.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G56460.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G56380.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G56470.1	protein_coding	FAD-dependent oxidoreductase family protein		FAD-dependent oxidoreductase family protein;(source:Araport11)
AT5G56480.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Non specific lipid transfer protein, with embryo sac specific expression.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G61480.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes PXY, a receptor-like kinase essential for maintaining polarity during plant vascular-tissue development.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G61460.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes SMC6B (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B), a component of the SMC5/6 complex.  SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G61470.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT5G58270.1	protein_coding	ABC transporter of the mitochondrion 3	Encodes a mitochondrial half-molecule ABC transporter, a member of ATM subfamily.  Mutants are dwarfed, chlorotic plants with altered leaf morphology. ATM3 transcription is induced by Cd(II) or Pb(II). Involved in heavy metal resistance. Arabidopsis thaliana has three ATM genes, namely ATM1, ATM2 and ATM3. Only ATM3 has an important function for plant growth. Role in Moco biosynthesis.	ABC transporter of the mitochondrion 3;(source:Araport11)
AT5G58330.1	protein_coding	lactate/malate dehydrogenase family protein		lactate/malate dehydrogenase family protein;(source:Araport11)
AT5G58400.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G58360.1	protein_coding	ovate family protein 3		ovate family protein 3;(source:Araport11)
AT5G58160.1	protein_coding	actin binding		actin binding protein;(source:Araport11)
AT5G58220.1	protein_coding	transthyretin-like protein	Encodes a transthyretin-like S-allantoin synthase protein that catalyzes two steps in the allantoin biosynthesis pathway by acting as a hydroxyisourate hydrolase and a 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) decarboxylase. Two alternatively spliced versions of the transcript give rise to a longer peroxisomally-targeted protein (AT5G58220.1  (called TTL1-)) and a slightly shorter cytoplasmic protein (AT5G58220.3 (called TTL2-)). Both have roughly equivalent enzymatic activity in vitro, but, allantoin biosynthesis is believed to occur in the peroxisome suggesting that the cytosolic form may participate in a different process.	transthyretin-like protein;(source:Araport11)
AT5G58190.1	protein_coding	evolutionarily conserved C-terminal region 10		evolutionarily conserved C-terminal region 10;(source:Araport11)
AT5G58250.1	protein_coding			YCF54;(source:Araport11)
AT5G58310.1	protein_coding	methyl esterase 18	Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	methyl esterase 18;(source:Araport11)
AT5G58280.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G58340.1	protein_coding	myb-like HTH transcriptional regulator family protein		myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT5G58410.1	protein_coding	HEAT/U-box domain-containing protein		HEAT/U-box domain-containing protein;(source:Araport11)
AT5G58370.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G58170.1	protein_coding	SHV3-like 5	Encodes a member of the glycerophosphodiester phosphodiesterase like (GDPD-like) family.	SHV3-like 5;(source:Araport11)
AT5G58230.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G58290.1	protein_coding	regulatory particle triple-A ATPase 3	26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,	regulatory particle triple-A ATPase 3;(source:Araport11)
AT5G58260.1	protein_coding	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor	Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor;(source:Araport11)
AT5G58320.1	protein_coding	Kinase interacting (KIP1-like) family protein	Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the tonoplast membrane. It is expressed in the epidermis of the root meristem and the early expansion zone.	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT5G58380.1	protein_coding	SOS3-interacting protein 1	Encodes a CBL-interacting protein kinase with similarity to SOS protein kinase.	SOS3-interacting protein 1;(source:Araport11)
AT5G58350.1	protein_coding	with no lysine (K) kinase 4	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 4;(source:Araport11)
AT5G58390.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G58180.1	protein_coding	Synaptobrevin family protein	member of YKT6 Gene Family	Synaptobrevin family protein;(source:Araport11)
AT5G58200.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT5G58210.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G58300.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G58240.1	protein_coding	FRAGILE HISTIDINE TRIAD	Encodes a Fhit protein. Has nucleoside phosphoramidase and adenylylsulfatase activities.	FRAGILE HISTIDINE TRIAD;(source:Araport11)
AT5G46060.1	protein_coding	Protein of unknown function, DUF599		spastin, putative (Protein of unknown function, DUF599);(source:Araport11)
AT5G46070.1	protein_coding	Guanylate-binding family protein		Guanylate-binding family protein;(source:Araport11)
AT5G45990.1	protein_coding	crooked neck protein, putative / cell cycle protein, putative		crooked neck protein, putative / cell cycle protein;(source:Araport11)
AT5G46160.1	protein_coding	Ribosomal protein L14p/L23e family protein		Ribosomal protein L14p/L23e family protein;(source:Araport11)
AT5G46080.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G46000.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT5G46170.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G46010.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT5G46090.1	protein_coding	Protein of unknown function (DUF679)		transmembrane protein, putative (DUF679);(source:Araport11)
AT5G46180.1	protein_coding	ornithine-delta-aminotransferase	Encodes an ornithine delta-aminotransferase that is transcriptionally up-regulated in young seedlings and in response to salt stress. It is unlikely to play a role in salt-stress-induced proline accumulation, however, it appears to participate in arginine and ornithine catabolism.	ornithine-delta-aminotransferase;(source:Araport11)
AT5G46020.1	protein_coding		MUSE7 was identified in a forward genetic screen to identify snc1 enhancers using a mos4 snc1 background. muse7 mos4 snc1 plants are morphologiclly similar to snc1 plants with slightly twisted leaves. The triple mutant also shows PR gene activation and enhanced resistance to pathogens, like the snc1 single mutant. It is a single copy gene conserved in plants and metazoans.MUSE7 encodes an evolutionarily conserved putative kinase substrate of unknown function that  affects the accumulation of NLR proteins.	28 kDa heat/acid-stable phosphoprotein-like protein;(source:Araport11)
AT5G46100.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G46190.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT5G46030.1	protein_coding			transcription elongation factor-like protein;(source:Araport11)
AT5G46110.1	protein_coding	Glucose-6-phosphate/phosphate translocator-related	Encodes a chloroplast triose phosphate / 3-phosphoglycerate translocator that transports triose phosphates derived from the Calvin cycle in the stroma to the cytosol for use in sucrose synthesis and other biosynthetic processes. A tpt mutant has altered acclimation responses. The mRNA is cell-to-cell mobile.	Glucose-6-phosphate/phosphate translocator-like protein;(source:Araport11)
AT5G46040.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G46120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05145.1);(source:TAIR10)
AT5G46050.1	protein_coding	peptide transporter 3	Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.	peptide transporter 3;(source:Araport11)
AT5G46130.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G46140.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G46150.1	protein_coding	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein		LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein;(source:Araport11)
AT5G17970.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G18060.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G17980.1	protein_coding	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein		C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT5G17990.1	protein_coding	tryptophan biosynthesis 1	Encodes the tryptophan biosynthetic enzyme phosphoribosylanthranilate transferase  (PAT1, called trpD in bacteria). Converts anthranilate and phosphoribosylpyrophosphate into phosphoribosylanthranilate and inorganic pyrophosphate. The mRNA is cell-to-cell mobile.	tryptophan biosynthesis 1;(source:Araport11)
AT5G18000.1	protein_coding	VERDANDI	Encodes VERDANDI (VDD), a putative transcription factor belonging to the reproductive meristem (REM) family.  VDD is a direct target of the MADS domain ovule identity complex.  Mutation in VDD affects embryo sac differentiation.	VERDANDI;(source:Araport11)
AT5G18010.1	protein_coding	SAUR-like auxin-responsive protein family	Encodes SAUR19 (small auxin up RNA 19).  Note that TAIR nomenclature is based on Plant Mol Biol. 2002, 49:373-85 (PMID:12036261). In Planta (2011) 233:1223–1235 (PMID:21327815), At5g18010 is SAUR24.	SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G18020.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G18030.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G18040.1	protein_coding			target of trans acting-siR480/255 protein;(source:Araport11)
AT5G18050.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G55270.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G55190.1	protein_coding	RAN GTPase 3	A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins.  May also be involved in cell cycle progression.	RAN GTPase 3;(source:Araport11)
AT5G55110.1	protein_coding	Stigma-specific Stig1 family protein		Stigma-specific Stig1 family protein;(source:Araport11)
AT5G55280.1	protein_coding	homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1	Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis.  It is involved in chloroplast division.	homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1;(source:Araport11)
AT5G55200.1	protein_coding	Co-chaperone GrpE family protein		Co-chaperone GrpE family protein;(source:Araport11)
AT5G55120.1	protein_coding	galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases	Encodes a GDP-L-galactose phosphorylase, with similar biochemical properties as VTC2.	GDP-L-galactose phosphorylase  VITAMIN C DEFECTIVE 5 (VTC5);(source:Araport11)
AT5G55290.1	protein_coding	ATPase, V0 complex, subunit E		ATPase, V0 complex, subunit E;(source:Araport11)
AT5G55210.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G55130.1	protein_coding	co-factor for nitrate, reductase and xanthine dehydrogenase 5	putative molybdopterin synthase sulphurylase (cnx5)	co-factor for nitrate, reductase and xanthine dehydrogenase 5;(source:Araport11)
AT5G55220.1	protein_coding	trigger factor type chaperone family protein		trigger factor type chaperone family protein;(source:Araport11)
AT5G55140.1	protein_coding	ribosomal protein L30 family protein		ribosomal protein L30 family protein;(source:Araport11)
AT5G55230.1	protein_coding	microtubule-associated proteins 65-1	Binds and bundles microtubules. Plays a role in stabilizing anti-parallel microtubules  in the central spindle at anaphase to early cytokinesis but is not essential at the midline of the phragmoplast at later stages. The timing with which the MAP65-1 was targeted to  the spindle appears to be regulated by a phosphorylation sensitive  switch. Enhances microtubule polymerization, promotes nucleation and stabilizes microtubules against cold treatment and dilution.	microtubule-associated proteins 65-1;(source:Araport11)
AT5G55240.1	protein_coding	ARABIDOPSIS THALIANA PEROXYGENASE 2	Catalyze hydroperoxide-dependent mono-oxygenation  reactions. Require calcium for peroxygenase activity. Probably  deeply buried in lipid droplets or microsomes.	PEROXYGENASE 2;(source:Araport11)
AT5G55150.1	protein_coding	Protein of unknown function (DUF295)		F-box SKIP23-like protein (DUF295);(source:Araport11)
AT5G55160.1	protein_coding	small ubiquitin-like modifier 2	Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays.	small ubiquitin-like modifier 2;(source:Araport11)
AT5G55250.1	protein_coding	IAA carboxylmethyltransferase 1	Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members  catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D. SABATH methyltransferase.	IAA carboxylmethyltransferase 1;(source:Araport11)
AT5G55080.1	protein_coding	ras-related nuclear protein 4	A member of RAN GTPase gene family.	ras-related nuclear protein 4;(source:Araport11)
AT5G55090.1	protein_coding	mitogen-activated protein kinase kinase kinase 15	member of MEKK subfamily	mitogen-activated protein kinase kinase kinase 15;(source:Araport11)
AT5G55170.1	protein_coding	small ubiquitin-like modifier 3	Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.	small ubiquitin-like modifier 3;(source:Araport11)
AT5G55260.1	protein_coding	protein phosphatase X 2	Encodes a protein with similarity to the catalytic subunit of the mammalian PPX protein phospatase.	protein phosphatase X 2;(source:Araport11)
AT5G55100.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G55180.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G56060.1	protein_coding	Domain of unknown function (DUF2431)		ATP-binding protein, putative (DUF2431);(source:Araport11)
AT5G56070.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G55990.1	protein_coding	calcineurin B-like protein 2	Encodes a member of the Arabidopsis CBL (Calcineurin B-like Calcium Sensor) protein family.	calcineurin B-like protein 2;(source:Araport11)
AT5G56160.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G56080.1	protein_coding	nicotianamine synthase 2	Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.	nicotianamine synthase 2;(source:Araport11)
AT5G56000.1	protein_coding	HEAT SHOCK PROTEIN 81.4		HEAT SHOCK PROTEIN 81.4;(source:Araport11)
AT5G56170.1	protein_coding	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1		LORELEI-LIKE-GPI-ANCHORED PROTEIN 1;(source:Araport11)
AT5G56090.1	protein_coding	cytochrome c oxidase 15	Encodes a homolog of COX15.  Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor.	cytochrome c oxidase 15;(source:Araport11)
AT5G56010.1	protein_coding	heat shock protein 81-3	A member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. Overexpression reduced tolerance to heat and conferred higher tolerance to calcium. The mRNA is cell-to-cell mobile.	heat shock protein 81-3;(source:Araport11)
AT5G56180.1	protein_coding	actin-related protein 8	encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.	actin-related protein 8;(source:Araport11)
AT5G56020.1	protein_coding	Got1/Sft2-like vescicle transport protein family		Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT5G56100.1	protein_coding	glycine-rich protein / oleosin		glycine-rich protein / oleosin;(source:Araport11)
AT5G56190.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G56030.1	protein_coding	heat shock protein 81-2	A member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. Interacts with HsfA1d in the cytosol and the nucleus and negatively regulates HsfA1d. Did not bind to  AtHsfA4c. The mRNA is cell-to-cell mobile.	heat shock protein 81-2;(source:Araport11)
AT5G56110.1	protein_coding	myb domain protein 103	Encodes a member of the R2R3 MYB transcription factor gene family that is required for anther development by regulation tapetum development, callose dissolution and exine formation.  It acts upstream of MS2.	myb domain protein 103;(source:Araport11)
AT5G56040.1	protein_coding	Leucine-rich receptor-like protein kinase family protein		Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT5G56120.1	protein_coding			RNA polymerase II elongation factor;(source:Araport11)
AT5G56050.1	protein_coding			late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G56130.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G56140.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT5G56150.1	protein_coding	ubiquitin-conjugating enzyme 30		ubiquitin-conjugating enzyme 30;(source:Araport11)
AT5G63290.1	protein_coding	Radical SAM superfamily protein	CPO3 (At5g63290) has not been characterized per se, but is a homolog of the CPDH/HEMN (see review by Layer et al, 2010). The homolog from cyanobacteria was recently characterized to be a CPDH (see Goto et al, 2010), but not yet from plants.	Radical SAM superfamily protein;(source:Araport11)
AT5G63130.1	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT5G63300.1	protein_coding	Ribosomal protein S21 family protein		Ribosomal protein S21 family protein;(source:Araport11)
AT5G63220.1	protein_coding			golgi-to-ER traffic-like protein;(source:Araport11)
AT5G63310.1	protein_coding	nucleoside diphosphate kinase 2	Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.	nucleoside diphosphate kinase 2;(source:Araport11)
AT5G63230.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein	glycosyl hydrolase family protein 17	Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT5G63140.1	protein_coding	purple acid phosphatase 29		purple acid phosphatase 29;(source:Araport11)
AT5G63150.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G63240.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT5G63160.1	protein_coding	BTB and TAZ domain protein 1	BTB and TAZ domain protein. Short-lived nuclear-cytoplasmic protein targeted for degradation by the 26S proteosome pathway. Acts redundantly with BT2 and BT3 during female gametophyte development.	BTB and TAZ domain protein 1;(source:Araport11)
AT5G63080.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Encodes a HR demethylase that acts as a positive regulator of seed germination in the PHYB-PIL5-SOM pathway.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G63250.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT5G63170.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G63090.1	protein_coding	Lateral organ boundaries (LOB) domain family protein	Involved in lateral organ development	Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT5G63260.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G63180.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G63100.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G63270.1	protein_coding	RPM1-interacting protein 4 (RIN4) family protein		RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT5G63190.1	protein_coding	MA3 domain-containing protein	Encodes a member of the MRF (MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR) gene family under TOR control that is transcriptionally induced by dark and starvation. MRF1 can be phosphorylated in vitro by S6K1 and S6K2.	MA3 domain-containing protein;(source:Araport11)
AT5G63280.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT5G63110.1	protein_coding	histone deacetylase 6	RPD3-like histone deacetylase.  HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.	histone deacetylase 6;(source:Araport11)
AT5G63120.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G63200.1	protein_coding	tetratricopeptide repeat (TPR)-containing protein		tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT5G46220.1	protein_coding	Protein of unknown function (DUF616)	Encodes a protein with alkaline ceramidase activity that is involved in regulation of turgor during pollen tube growth and silique stomatal movement. Tod1 is expressed specifically in pollen and silique guard cells. Loss of function mutations have reduced fertility  due to defects in pollen transmission.	transmembrane protein (DUF616);(source:Araport11)
AT5G55660.1	protein_coding	DEK domain-containing chromatin associated protein		DEK domain-containing chromatin associated protein;(source:Araport11)
AT5G55590.1	protein_coding	Pectin lyase-like superfamily protein	Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.	Pectin lyase-like superfamily protein;(source:Araport11)
AT5G55670.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G55760.1	protein_coding	sirtuin 1	Encodes SRT1, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).	sirtuin 1;(source:Araport11)
AT5G55600.1	protein_coding	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein		Agenet and bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT5G55680.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT5G55770.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G55610.1	protein_coding			isopentenyl-diphosphate delta-isomerase;(source:Araport11)
AT5G55690.1	protein_coding	MADS-box transcription factor family protein	AGL47 MADS box gene.	MADS-box transcription factor family protein;(source:Araport11)
AT5G55780.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G55620.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G55700.1	protein_coding	beta-amylase 4	In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role.	beta-amylase 4;(source:Araport11)
AT5G55790.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G55630.1	protein_coding	Outward rectifying potassium channel protein	Encodes AtTPK1 (KCO1), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK1 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. Voltage-independent and Ca2+-activated K+ channel. Activated by 14-3-3 proteins.	Outward rectifying potassium channel protein;(source:Araport11)
AT5G55710.1	protein_coding		Encodes a component of the TIC (translocon at the inner envelope membrane of chloroplasts) protein translocation machinery mediating the protein translocation across the inner envelope of plastids. The Arabidopsis genome encodes four Tic20 homologous proteins, AT1G04940(Tic20-I), AT2G47840(Tic20-II), AT4G03320(Tic20-IV) and AT5G55710(Tic20-V).	TIC 20-v-like protein;(source:Araport11)
AT5G55800.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G55640.1	protein_coding			Na-translocating NADH-quinone reductase subunit A;(source:Araport11)
AT5G55720.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G55810.1	protein_coding	nicotinate/nicotinamide mononucleotide adenyltransferase	encodes a bi-functional enzyme that expresses both nicotinamide-nucleotide adenylyltransferase (2.7.7.1) and nicotinate-nucleotide adenylyltransferase (2.7.7.18)activity.	nicotinate/nicotinamide mononucleotide adenyltransferase;(source:Araport11)
AT5G55650.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G55730.1	protein_coding	FASCICLIN-like arabinogalactan 1	Encodes fasciclin-like arabinogalactan-protein 1 (Fla1). fla1 mutants show defects in shoot regeneration. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan 1;(source:Araport11)
AT5G55820.1	protein_coding		Encodes a plant ortholog of the inner centromere protein (INCENP), which is implicated in the control of chromosome segregation and cytokinesis in yeast and animals.  Required for female gametophytic cell specification and seed development.	inner centromere protein, ARK-binding region protein;(source:Araport11)
AT5G55740.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a member of the E+ subgroup of the PPR protein family, containing the E and E+ motifs following a tandem array of PPR motifs.  It also contains an unknown motif consisting of 15 aa, which is highly conserved in some PPR proteins, including CRR4.  CRR21 is involved in RNA editing of the site 2 of ndhD (ndhD-2),which encodes a subunit of the NDH complex.  The RNA editing changes aa 128 from Ser to Leu.  Mutants have impaired NDH complex activity.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G55830.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G55750.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G42420.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT5G42430.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G42350.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	Encodes CFK1 (COP9 INTERACTING F-BOX KELCH 1), a CSN (COP9 signalosome)-interacting F-box protein. CFK1 is a component of a functional ubiquitin ligase complex. CFK1 promotes hypocotyl elongation by increasing cell size.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G42520.1	protein_coding	basic pentacysteine 6	Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.	basic pentacysteine 6;(source:Araport11)
AT5G42440.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G42360.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G42530.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G42450.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G42370.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT5G42460.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G42380.1	protein_coding	calmodulin like 37		calmodulin like 37;(source:Araport11)
AT5G42470.1	protein_coding			BRCA1-A complex subunit BRE-like protein;(source:Araport11)
AT5G42390.1	protein_coding	Insulinase (Peptidase family M16) family protein	Encodes a chloroplast-localized metalloprotease that is essential for embryo development.  Mutants do not progress normally beyond the 16-cell stage. The mRNA is cell-to-cell mobile.	Insulinase (Peptidase family M16) family protein;(source:Araport11)
AT5G42480.1	protein_coding	Chaperone DnaJ-domain superfamily protein	Shows homology to the cyanobacterial cell division protein Ftn2, mutant only has two mesophyll cell chloroplasts.  Protein was localized to a ring at the center of the chloroplasts. Probably involved in functions in the assembly and/or stabilization of the plastid-dividing FtsZ ring, inhibiting FtsZ filament formation in the chloroplast.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G42400.1	protein_coding	SET domain protein 25	Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C.	SET domain protein 25;(source:Araport11)
AT5G42490.1	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT5G42410.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G42500.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT5G42510.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT5G22680.1	protein_coding			F-box protein;(source:Araport11)
AT5G22690.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G22610.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G22620.1	protein_coding	phosphoglycerate/bisphosphoglycerate mutase family protein	encodes a putative 2-carboxy-D-arabinitol 1-phosphate phosphatase	phosphoglycerate/bisphosphoglycerate mutase family protein;(source:Araport11)
AT5G22700.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		LOW protein: F-box/FBD/LRR-like protein;(source:Araport11)
AT5G22630.1	protein_coding	arogenate dehydratase 5	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis.  Not less than six genes encoding ADT were identi&#64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250]. The mRNA is cell-to-cell mobile.	arogenate dehydratase 5;(source:Araport11)
AT5G22640.1	protein_coding	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein	EMB1211 is a MORN (multiple membrane  occupation and recognition nexus) motif containing protein involved in embryo development and chloroplast biogenesis. The mRNA is cell-to-cell mobile.	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein;(source:Araport11)
AT5G22720.1	protein_coding	F-box/RNI-like superfamily protein	Encodes a F-box protein. Overexpression disrupts cotyledon vein patterning.	F-box/FBD/LRR protein;(source:Araport11)
AT5G22650.1	protein_coding	histone deacetylase 2B	Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.	histone deacetylase 2B;(source:Araport11)
AT5G22730.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G22660.1	protein_coding	FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein		FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G22740.1	protein_coding	cellulose synthase-like A02	Encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein. CSLA2 synthesizes the backbone of galactoglucomannan in seed coat epidermal cells. Both CSLA2 and MUCI10, which may be part of a protein complex, are critical for mucilage architecture.	cellulose synthase-like A02;(source:Araport11)
AT5G22670.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G22750.1	protein_coding	DNA/RNA helicase protein	DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer	DNA/RNA helicase protein;(source:Araport11)
AT5G22760.1	protein_coding	PHD finger family protein		PHD finger family protein;(source:Araport11)
AT5G54350.1	protein_coding			C2H2-type zinc finger protein;(source:Araport11)
AT5G54270.1	protein_coding	light-harvesting chlorophyll B-binding protein 3	Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II).	light-harvesting chlorophyll B-binding protein 3;(source:Araport11)
AT5G54360.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT5G54280.1	protein_coding	myosin 2	Type VII myosin gene	myosin 2;(source:Araport11)
AT5G54370.1	protein_coding	Late embryogenesis abundant (LEA) protein-related		Late embryogenesis abundant (LEA) protein-like protein;(source:Araport11)
AT5G54290.1	protein_coding	cytochrome c biogenesis protein family	Encodes CcdA, a thylakoid membrane protein required for the transfer of reducing equivalents from stroma to thylakoid lumen.	cytochrome c biogenesis protein family;(source:Araport11)
AT5G54210.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G54300.1	protein_coding	Protein of unknown function (DUF761)		cotton fiber-like protein (DUF761);(source:Araport11)
AT5G54220.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT5G54310.1	protein_coding	ARF-GAP domain 5	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  Regulates membrane trafficking and organ separation.	ARF-GAP domain 5;(source:Araport11)
AT5G54230.1	protein_coding	myb domain protein 49	MYB49 transcription factor. Binds to and promotes expression of genes involved in cadmium accumulation. Interacts with ABI5 which acts as a repressor preventing MYB49 induced expression of target genes.	myb domain protein 49;(source:Araport11)
AT5G54320.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G54240.1	protein_coding	Protein of unknown function (DUF1223)		membrane lipoprotein lipid attachment site-like protein, putative (DUF1223);(source:Araport11)
AT5G54330.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G54250.1	protein_coding	cyclic nucleotide-gated cation channel 4	member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.	cyclic nucleotide-gated cation channel 4;(source:Araport11)
AT5G54340.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G54260.1	protein_coding	DNA repair and meiosis protein (Mre11)	DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and NBS1	DNA repair and meiosis protein (Mre11);(source:Araport11)
AT5G48070.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 20	putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root.  Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. Involved in cell proliferation in incised inflorescence stems.	xyloglucan endotransglucosylase/hydrolase 20;(source:Araport11)
AT5G48000.1	protein_coding	cytochrome P450, family 708, subfamily A, polypeptide 2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	cytochrome P450, family 708, subfamily A, polypeptide 2;(source:Araport11)
AT5G48090.1	protein_coding	EDM2-like protein1		EDM2-like protein1;(source:Araport11)
AT5G48010.1	protein_coding	thalianol synthase 1	Encodes an oxidosqualene cyclase involved in the  biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.	thalianol synthase 1;(source:Araport11)
AT5G48100.1	protein_coding	Laccase/Diphenol oxidase family protein	Encodes a protein that is similar to laccase-like polyphenol oxidases.  Involved in lignin and flavonoids biosynthesis.  It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.	Laccase/Diphenol oxidase family protein;(source:Araport11)
AT5G48020.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G48110.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein	The Col variant has no enzyme activity due to various substitution and deletion mutations.	Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT5G48030.1	protein_coding	gametophytic factor 2	encodes a mitochondrially targeted DNAJ protein involved in female gametophyte development.	gametophytic factor 2;(source:Araport11)
AT5G48120.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G48040.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT5G48050.1	protein_coding			Copia-like polyprotein/retrotransposon;(source:Araport11)
AT5G48060.1	protein_coding	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein		C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT5G36030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G19310.1);(source:TAIR10)
AT5G35950.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT5G36040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28970.1);(source:TAIR10)
AT5G35960.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT5G36050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19300.1);(source:TAIR10)
AT5G35970.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G36060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19290.1);(source:TAIR10)
AT5G35980.1	protein_coding	yeast YAK1-related gene 1	Encodes a dual specificity protein kinase which phosphorylates substract proteins on Ser/Thr and Tyr residues. Some substrates include annexin family proteins. YAK1 mutations suppress TOR deficiency in Arabidopsis and consequences of lst8 mutations. The YAK1 protein is phosphorylated by the TOR kinase.	YAK1-like protein 1;(source:Araport11)
AT5G36070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35080.1);(source:TAIR10)
AT5G36000.1	protein_coding			F-box protein RMF;(source:Araport11)
AT5G36010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52410.1);(source:TAIR10)
AT5G36020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52087.1);(source:TAIR10)
AT5G41040.1	protein_coding	HXXXD-type acyl-transferase family protein	Encodes a feruloyl-CoA transferase required for suberin synthesis. Has feruloyl-CoA-dependent feruloyl transferase activity towards substrates with a primary alcohol.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G41050.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G41140.1	protein_coding	Myosin heavy chain-related protein		Myosin heavy chain-related protein;(source:Araport11)
AT5G41060.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT5G41150.1	protein_coding	Restriction endonuclease, type II-like superfamily protein	Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair  and yeast Rad1 proteins	Restriction endonuclease, type II-like superfamily protein;(source:Araport11)
AT5G41070.1	protein_coding	dsRNA-binding protein 5	Encodes a double-stranded RNA binding protein.	dsRNA-binding protein 5;(source:Araport11)
AT5G40990.1	protein_coding	GDSL lipase 1	Component of plant resistance.  Contains lipase signature motif and GDSL domain.  Directly interferes with the fungal infection process by acting on fungal cell walls through its action as a antimicrobial compound.  Critical component for both local and systemic resistance responses in the incompatible interaction with Alternaria brassicicola in the ethylene-dependent pathway.	GDSL lipase 1;(source:Araport11)
AT5G41160.1	protein_coding	purine permease 12	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 12;(source:Araport11)
AT5G41080.1	protein_coding	PLC-like phosphodiesterases superfamily protein	Encodes a member of the glycerophosphodiester phosphodiesterase (GDPD) family.	PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT5G41000.1	protein_coding	YELLOW STRIPE like 4	Arabidopsis thaliana metal-nicotianamine transporter YSL4	YELLOW STRIPE like 4;(source:Araport11)
AT5G41170.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT5G41090.1	protein_coding	NAC domain containing protein 95		NAC domain containing protein 95;(source:Araport11)
AT5G41010.1	protein_coding	DNA directed RNA polymerase, 7 kDa subunit	Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.	DNA directed RNA polymerase, 7 kDa subunit;(source:Araport11)
AT5G41180.1	protein_coding	leucine-rich repeat transmembrane protein kinase family protein		leucine-rich repeat transmembrane protein kinase family protein;(source:Araport11)
AT5G41100.1	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G41020.1	protein_coding	myb family transcription factor		myb family transcription factor;(source:Araport11)
AT5G41190.1	protein_coding		Encodes a cytoplasmic protein with RNA endonuclease activity. Mutants display aberrant RNA processing and male and female gametophyte development.	RNA-binding NOB1-like protein;(source:Araport11)
AT5G41110.1	protein_coding			meiosis chromosome segregation family protein;(source:Araport11)
AT5G41030.1	protein_coding	TCP family transcription factor 		TCP family transcription factor;(source:Araport11)
AT5G41200.1	protein_coding	AGAMOUS-like 75		AGAMOUS-like 75;(source:Araport11)
AT5G41120.1	protein_coding	Esterase/lipase/thioesterase family protein		Esterase/lipase/thioesterase family protein;(source:Araport11)
AT5G41210.1	protein_coding	glutathione S-transferase THETA 1	Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase THETA 1;(source:Araport11)
AT5G41130.1	protein_coding	Esterase/lipase/thioesterase family protein		Esterase/lipase/thioesterase family protein;(source:Araport11)
AT5G61340.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G61430.1	protein_coding	NAC domain containing protein 100		NAC domain containing protein 100;(source:Araport11)
AT5G61350.1	protein_coding	Protein kinase superfamily protein	Encodes a membrane-localized receptor-like kinase that regulates root hair tip growth by maintaining cytoplasmic Ca2+ gradients. Knockouts of CAP1 produced more cytoplasmic NH4+ and ceased growth of root hairs on MS medium except when NH4+ was depleted; NH4+ depletion reestablished the Ca2+ gradient necessary for normal growth. The lower net NH4+ influx across the vacuolar membrane and relatively alkaline cytosolic pH of root hairs in cap1-1 relative to wild type implied that mutation of CAP1 results in more NH4+ accumulation in the cytoplasm. Furthermore, CAP1 functionally complemented npr1 kinase yeast mutant defective in high-affinity NH4+ uptake via MEP2, distinguishing CAP1 as a cytosolic modulator of NH4+ level that participates in NH4+ homeostasis-regulated root hair growth by modulating tip-focused cytoplasmic Ca2+ gradients.	Protein kinase superfamily protein;(source:Araport11)
AT5G61270.1	protein_coding	phytochrome-interacting factor7	Basic helix-loop-helix (bHLH) phytochrome interacting  factor. Interacts specifically with the far-red light–absorbing Pfr form of phyB through a conserved  domain called the active phyB binding motif. Upon light exposure, PIF7 rapidly migrates to intranuclear  speckles, where it colocalizes with phyB. Role as negative regulator of phyB-mediated seedling deetiolation.	phytochrome-interacting factor7;(source:Araport11)
AT5G61440.1	protein_coding	atypical CYS  HIS rich thioredoxin 5	Encodes a member of the thioredoxin family protein.  Located in the chloroplast. The mRNA is cell-to-cell mobile.	atypical CYS HIS rich thioredoxin 5;(source:Araport11)
AT5G61360.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G61280.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT5G61370.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G61290.1	protein_coding	Flavin-binding monooxygenase family protein		Flavin-binding monooxygenase family protein;(source:Araport11)
AT5G61380.1	protein_coding	CCT motif -containing response regulator protein	Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed.  TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization. The mRNA is cell-to-cell mobile.	CCT motif -containing response regulator protein;(source:Araport11)
AT5G61300.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G61390.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G61310.1	protein_coding	Cytochrome c oxidase subunit Vc family protein		Cytochrome c oxidase subunit Vc family protein;(source:Araport11)
AT5G61400.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G61320.1	protein_coding	cytochrome P450, family 89, subfamily A, polypeptide 3	member of CYP89A	cytochrome P450, family 89, subfamily A, polypeptide 3;(source:Araport11)
AT5G61410.1	protein_coding	D-ribulose-5-phosphate-3-epimerase	Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA	D-ribulose-5-phosphate-3-epimerase;(source:Araport11)
AT5G61420.1	protein_coding	myb domain protein 28	Encodes a nuclear localized member of the MYB transcription factor family. Involved in positive regulation of aliphatic glucosinolate biosynthesis.Expression is induced by touch, wounding and glucose.	myb domain protein 28;(source:Araport11)
AT5G61330.1	protein_coding	rRNA processing protein-related		rRNA processing protein-like protein;(source:Araport11)
AT5G50720.1	protein_coding	HVA22 homologue E	Encodes one of five HVA22 homologs in Arabidopsis.  HVA22 is an ABA- and stress-inducible gene first isolated from barley.  Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.	HVA22 homologue E;(source:Araport11)
AT5G50740.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G50750.1	protein_coding	reversibly glycosylated polypeptide 4	RGP4 is a reversibly glycosylated polypeptide. Analyses using tagged RGP4 suggest that it is present in the cytosol and in association with the Golgi apparatus. Recombinant RGP4 does not have UDP-arabinose mutase activity based on an in vitro assay even though the related RGP1, RGP2, and RGP3 proteins do have activity in the same assay. RGP4 can form complexes with RGP1 and RGP2. RGP4 is expressed during seed development.	reversibly glycosylated polypeptide 4;(source:Araport11)
AT5G50760.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G50770.1	protein_coding	hydroxysteroid dehydrogenase 6	Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include:   At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463).  Two copies of HSD1 and HSD4 exist due to a gene duplication event.  In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.	hydroxysteroid dehydrogenase 6;(source:Araport11)
AT5G50780.1	protein_coding	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	MORC4 is a member of a family of  GHKL ATPases. It is localized in the nuceloplasm and adjacent to chromocenters. Along with MORC7, it appears to repress the expression	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein;(source:Araport11)
AT5G50790.1	protein_coding	Nodulin MtN3 family protein	Encodes a member of the SWEET sucrose efflux transporter family proteins.	Nodulin MtN3 family protein;(source:Araport11)
AT5G44540.1	protein_coding	Tapetum specific protein TAP35/TAP44		Tapetum specific protein TAP35/TAP44;(source:Araport11)
AT5G44460.1	protein_coding	calmodulin like 43		calmodulin like 43;(source:Araport11)
AT5G44550.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT5G44470.1	protein_coding			ribonuclease H superfamily polynucleotidyl transferase;(source:Araport11)
AT5G44560.1	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT5G44480.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	mutant has Altered lateral root; UDP Glucose Epimerase The mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G44490.1	protein_coding	FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein		FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G44500.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT5G44510.1	protein_coding	target of AVRB operation1	Encodes TAO1 (Target of AvrB Operation), a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB.	target of AVRB operation1;(source:Araport11)
AT5G44430.1	protein_coding	plant defensin 1.2C	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	plant defensin 1.2C;(source:Araport11)
AT5G44520.1	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein		NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT5G44440.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT5G44530.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT5G44450.1	protein_coding	methyltransferases		alpha amino-terminal protein methyltransferase;(source:Araport11)
AT5G45440.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G45450.1	protein_coding	Oligopeptide transporter OPT superfamily protein		Oligopeptide transporter OPT superfamily protein;(source:Araport11)
AT5G45540.1	protein_coding	Protein of unknown function (DUF594)		transmembrane protein, putative (DUF594);(source:Araport11)
AT5G45460.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G45380.1	protein_coding	solute:sodium symporters;urea transmembrane transporters		urea-proton symporter DEGRADATION OF UREA 3 (DUR3);(source:Araport11)
AT5G45550.1	protein_coding	Mob1/phocein family protein	Encodes a gene product involved in both sporogenesis and gametogenesis and is required for the normal progression of megasporogenesis and microsporogenesis. Additional alleles were isolated in a screen for enhancers of PID and genetic analysis indicates a role for MOB1A in auxin mediated signaling.	Mob1/phocein family protein;(source:Araport11)
AT5G45390.1	protein_coding	CLP protease P4	One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). The mRNA is cell-to-cell mobile.	CLP protease P4;(source:Araport11)
AT5G45470.1	protein_coding	Protein of unknown function (DUF594)		transmembrane protein, putative (DUF594);(source:Araport11)
AT5G45560.1	protein_coding	Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein		Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein;(source:Araport11)
AT5G45400.1	protein_coding	Replication factor-A protein 1-related		Replication factor-A protein 1-like protein;(source:Araport11)
AT5G45480.1	protein_coding	Protein of unknown function (DUF594)		transmembrane protein, putative (DUF594);(source:Araport11)
AT5G45410.1	protein_coding		Plastid localized protein of unknown function. Mutants are more susceptible to P. syringae and produce less callose upon infection.	zinc finger B-box protein;(source:Araport11)
AT5G45490.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G45420.1	protein_coding	Duplicated homeodomain-like superfamily protein	The gene encodes a MYB transcription factor belons to R2R3-MYB family of transcription factors. Knock-down mutant analysis indicates its role in root hair elongation.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT5G45500.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT5G45430.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G45510.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G45520.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G45530.1	protein_coding	Protein of unknown function (DUF594)		transmembrane protein, putative (DUF594);(source:Araport11)
AT5G51410.1	protein_coding	LUC7 N_terminus domain-containing protein		LUC7 N terminus domain-containing protein;(source:Araport11)
AT5G51420.1	protein_coding	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein		long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein;(source:Araport11)
AT5G51340.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	SCC4 is a tetratricopeptide repeat containing protein and a likely component of a plant cohesion loading complex along with its partner SSC2 It is expressed primarily in dividing cells. Loss of function mutants are embryo lethal, arresting by globular stage.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G51430.1	protein_coding	conserved oligomeric Golgi complex component-related / COG complex component-related	Encodes a protein that is homologous to Cog7, a subunit of the conserved oligomeric Golgi (COG) complex, which is required for the normal morphology and function of the Golgi apparatus. It is likely to be involved in transport or retention of Golgi-localized proteins and in maintenance of Golgi morphology.	conserved oligomeric Golgi complex component-related / COG complex component-like protein;(source:Araport11)
AT5G51350.1	protein_coding	Leucine-rich repeat transmembrane protein kinase family protein	Encodes a receptor-like kinase that represses secondary growth, the production of secondary vascular tissues.	Leucine-rich repeat transmembrane protein kinase family protein;(source:Araport11)
AT5G51440.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT5G51360.1	protein_coding	Transcription elongation factor (TFIIS) family protein		Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT5G51450.1	protein_coding	RPM1 interacting protein 3	Encodes RING-finger type ubiquitin ligases.	RPM1 interacting protein 3;(source:Araport11)
AT5G51370.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT5G51380.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT5G51390.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G51400.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT5G53160.1	protein_coding	regulatory components of ABA receptor 3	Encodes RCAR3, a regulatory component of ABA receptor.  Interacts with protein phosphatase 2Cs ABI1 and ABI2.  Stimulates ABA signaling. The mRNA is cell-to-cell mobile.	regulatory components of ABA receptor 3;(source:Araport11)
AT5G53170.1	protein_coding	FTSH protease 11	encodes an FtsH protease that is localized to the chloroplast and the mitochondrion	FTSH protease 11;(source:Araport11)
AT5G53180.1	protein_coding	polypyrimidine tract-binding protein 2	Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	polypyrimidine tract-binding protein 2;(source:Araport11)
AT5G53190.1	protein_coding	Nodulin MtN3 family protein		Nodulin MtN3 family protein;(source:Araport11)
AT5G53200.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT5G53120.1	protein_coding	spermidine synthase 3	encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.	spermidine synthase 3;(source:Araport11)
AT5G53130.1	protein_coding	cyclic nucleotide gated channel 1	member of Cyclic nucleotide gated channel family	cyclic nucleotide gated channel 1;(source:Araport11)
AT5G53140.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT5G53150.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DnaJ heat shock amino-terminal domain protein;(source:Araport11)
AT5G42600.1	protein_coding	marneral synthase	Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral. Crucial for growth and development.	marneral synthase;(source:Araport11)
AT5G42610.1	protein_coding	Protein of unknown function (DUF607)		calcium uniporter (DUF607);(source:Araport11)
AT5G42620.1	protein_coding	metalloendopeptidases;zinc ion binding		metalloendopeptidase / zinc ion binding protein;(source:Araport11)
AT5G42630.1	protein_coding	Homeodomain-like superfamily protein	Encodes a member of the KANADI family of putative transcription factors.  Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G42640.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Member of a small family of zinc finger containing putative transcription factors.Similar to GAZ.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G63890.1	protein_coding	histidinol dehydrogenase	Encodes histidinol dehydrogenase. Up-regulated in response to UV-B.	histidinol dehydrogenase;(source:Araport11)
AT5G63900.1	protein_coding	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain		Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein;(source:Araport11)
AT5G63910.1	protein_coding	farnesylcysteine lyase	Encodes a farnesylcysteine lyase (EC 1.8.3.5) involved in a salvage /detoxification pathway of farnesylcysteine (FC) residues that are liberated during the degradation of prenylated proteins. Because FC is a competitive inhibitor of prenylcysteine methyltransferases involved in the down-regulation of ABA signaling, fcly mutants with elevated FC levels are hypersensitive to ABA. The protein also appears to be glycosylated when translated in vitro in the presence of microsomal membranes and it likely requires FAD for enzymatic activity.	farnesylcysteine lyase;(source:Araport11)
AT5G63840.1	protein_coding	Glycosyl hydrolases family 31  protein	radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.	Glycosyl hydrolases family 31 protein;(source:Araport11)
AT5G63850.1	protein_coding	amino acid permease 4	Amino acid transporter whose expression is downregulated by dehydration.	amino acid permease 4;(source:Araport11)
AT5G63860.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein	UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. UV-B light promotes URV8 protein accumulation in the nucleus. UVR8 interaction with COP1 is negatively regulated by RUP1 and RUP2.	Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT5G63870.1	protein_coding	serine/threonine phosphatase 7	Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling.	serine/threonine phosphatase 7;(source:Araport11)
AT5G63880.1	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT5G53820.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT5G53740.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G53830.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT5G53750.1	protein_coding	CBS domain-containing protein		CBS domain-containing protein;(source:Araport11)
AT5G53760.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO11 belongs to the clade I, with AtMLO4 and AtMLO14. The gene is expressed during early seedling growth (in primary root), in root tips and lateral root primordia, and in very young leaves, and in flowers and fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT5G53770.1	protein_coding	Nucleotidyltransferase family protein		Nucleotidyltransferase family protein;(source:Araport11)
AT5G53780.1	protein_coding	Protein of unknown function (DUF295)		F-box protein, putative (DUF295);(source:Araport11)
AT5G53790.1	protein_coding	Protein of unknown function (DUF295)		F-box protein, putative (DUF295);(source:Araport11)
AT5G53800.1	protein_coding			nucleic acid-binding protein;(source:Araport11)
AT5G53720.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G53810.1	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT5G53730.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT5G60140.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G60060.1	protein_coding	Protein of unknown function (DUF295)		F-box SKIP23-like protein (DUF295);(source:Araport11)
AT5G60070.1	protein_coding	ankyrin repeat family protein		ankyrin repeat family protein;(source:Araport11)
AT5G60080.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G60090.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G60100.1	protein_coding	pseudo-response regulator 3	Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.	pseudo-response regulator 3;(source:Araport11)
AT5G60110.1	protein_coding	pumilio 18	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 18;(source:Araport11)
AT5G60120.1	protein_coding	target of early activation tagged (EAT) 2		target of early activation tagged (EAT) 2;(source:Araport11)
AT5G60040.1	protein_coding	nuclear RNA polymerase C1	Encodes a subunit of RNA polymerase III (aka RNA polymerase C).	nuclear RNA polymerase C1;(source:Araport11)
AT5G60130.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G60050.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT5G06340.1	protein_coding	nudix hydrolase homolog 27		nudix hydrolase homolog 27;(source:Araport11)
AT5G06260.1	protein_coding	TLD-domain containing nucleolar protein		TLD-domain containing nucleolar protein;(source:Araport11)
AT5G06350.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G06270.1	protein_coding		One of two plant specific paralogs of unknown function. Interacts with GL2. GIR1/GIR2 loss of function resembles gl2 lof mutations	hypothetical protein;(source:Araport11)
AT5G06440.1	protein_coding			polyketide cyclase/dehydrase/lipid transport superfamily protein;(source:Araport11)
AT5G06360.1	protein_coding	Ribosomal protein S8e family protein		Ribosomal protein S8e family protein;(source:Araport11)
AT5G06280.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G06450.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	RICE2 is cytoplasmically localized and has 3?- 5? exoribonuclease activity. When RICE2 and its paralog RICE1  are knocked down, miRNA levels are decreased. RICE1 interacts with AGO1 and AGO10. It may affect miRNA accumulation by clearing RISC by degrading 5? products of AGO cleavage	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G06370.1	protein_coding	NC domain-containing protein-related	PSE1 is a single copy gene that is induced in response to lead and confers increased tolerance to lead when overexpressed. It is localized to the cytoplasm. The protein has an NC domain. PSE1 appears to regulate tolerance via a  GSH dependent phytochelatin synthesis pathway.	NC domain-containing protein-like protein;(source:Araport11)
AT5G06290.1	protein_coding	2-cysteine peroxiredoxin B	Encodes a 2-Cys peroxiredoxin (2-Cys PrxB) that contains two catalytic Cys residues. The mRNA is cell-to-cell mobile.	2-cysteine peroxiredoxin B;(source:Araport11)
AT5G06460.1	protein_coding	ubiquitin activating enzyme 2	Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. The mRNA is cell-to-cell mobile.	ubiquitin activating enzyme 2;(source:Araport11)
AT5G06380.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G06300.1	protein_coding	Putative lysine decarboxylase family protein		Putative lysine decarboxylase family protein;(source:Araport11)
AT5G06470.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT5G06390.1	protein_coding	FASCICLIN-like arabinogalactan protein 17 precursor		FASCICLIN-like arabinogalactan protein 17 precursor;(source:Araport11)
AT5G06310.1	protein_coding	Nucleic acid-binding, OB-fold-like protein	Encodes AtPOT1b.  Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.	Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT5G06400.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G06320.1	protein_coding	NDR1/HIN1-like 3	encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.	NDR1/HIN1-like 3;(source:Araport11)
AT5G06410.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein	HscB is a mitochondrial cochaperone involved in [Fe-S] cluster biosynthesis and iron homeostasis.	DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G06330.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT5G06420.1	protein_coding	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein		Zinc finger (CCCH-type/C3HC4-type RING finger) family protein;(source:Araport11)
AT5G06430.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT5G64120.1	protein_coding	Peroxidase superfamily protein	Encodes a cell wall bound peroxidase that is induced by hypo-osmolarity and is involved in the lignification of cell walls.	Peroxidase superfamily protein;(source:Araport11)
AT5G64130.1	protein_coding	cAMP-regulated phosphoprotein 19-related protein		cAMP-regulated phosphoprotein 19-related protein;(source:Araport11)
AT5G64140.1	protein_coding	ribosomal protein S28	Encodes a putative ribosomal protein S28.	ribosomal protein S28;(source:Araport11)
AT5G64150.1	protein_coding	RNA methyltransferase family protein		RNA methyltransferase family protein;(source:Araport11)
AT5G64070.1	protein_coding	phosphatidylinositol 4-OH kinase beta1	Encodes a phosphatidylinositol 4-OH kinase, PI-4Kbeta1.  Arabidopsis contains 12 PI-4Ks in three separate families: PI-4Kalphs, PI-4kbeta, and PI-4Kgamma.  PI-4Kbeta1 is 83% identical to PI-4kbeta2 encoded by At5g09350.  Interacts with the RabA4b GTPase.  Important for polarized root hair growth as the loss of this gene and its close relative PI-4kbeta2, leads to the formation of abnormal root hairs.	phosphatidylinositol 4-OH kinase beta1;(source:Araport11)
AT5G64160.1	protein_coding			plant/protein;(source:Araport11)
AT5G64080.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G64170.1	protein_coding	dentin sialophosphoprotein-related	LNK1 is a member of a small family (4 proteins) in Arabidopsis that have some overlap in function. LNK1  functions in the integration of light signaling and circadian clock. It is regulated by  the clock TOC1 complex.Functions as a transcriptional coactivator.	dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G64090.1	protein_coding			hyccin;(source:Araport11)
AT5G64100.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G64110.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G40880.1	protein_coding	WD-40 repeat family protein / zfwd3 protein (ZFWD3)		WD-40 repeat family protein / zfwd3 protein (ZFWD3);(source:Araport11)
AT5G40800.1	protein_coding		ABA&#8208;induced transcription repressor that acts as feedback regulator in ABA signalling.	hypothetical protein;(source:Araport11)
AT5G40890.1	protein_coding	chloride channel A	Encodes a member of the voltage-dependent chloride channel. Also functions as a NO3-/H+ exchanger that serves to accumulate nitrate nutrient in vacuoles.  Mutants homozygous for the T-DNA insertion mutation have reduced nitrate uptake capacity in high nitrate environment and exhibit hypersensitivity to chlorate.	chloride channel A;(source:Araport11)
AT5G40810.1	protein_coding	Cytochrome C1 family		Cytochrome C1 family;(source:Araport11)
AT5G40900.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein		Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT5G40820.1	protein_coding	Ataxia telangiectasia-mutated and RAD3-related	Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.	Ataxia telangiectasia-mutated and RAD3-like protein;(source:Araport11)
AT5G40910.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G40830.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G40920.1	pseudogene			pseudogene of Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G40840.1	protein_coding	Rad21/Rec8-like family protein	Cohesion family protein SYN2 (SYN2). Plays a role in somatic DNA double strand break damage repair.	Rad21/Rec8-like family protein;(source:Araport11)
AT5G40850.1	protein_coding	urophorphyrin methylase 1	Encodes a urophorphyrin III methylase that  catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine. The mRNA is cell-to-cell mobile.	urophorphyrin methylase 1;(source:Araport11)
AT5G40860.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G40870.1	protein_coding	uridine kinase/uracil phosphoribosyltransferase 1	Encodes a protein that with uridine kinase but not uracil phosphoribosyltransferase activities.	uridine kinase/uracil phosphoribosyltransferase 1;(source:Araport11)
AT5G57020.1	protein_coding	myristoyl-CoA:protein N-myristoyltransferase	Arabidopsis thaliana myristoyl-CoA:protein N-myristoyltransferase.	myristoyl-CoA:protein N-myristoyltransferase;(source:Araport11)
AT5G56940.1	protein_coding	Ribosomal protein S16 family protein		Ribosomal protein S16 family protein;(source:Araport11)
AT5G57030.1	protein_coding	Lycopene beta/epsilon cyclase protein	Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase	Lycopene beta/epsilon cyclase protein;(source:Araport11)
AT5G56950.1	protein_coding	nucleosome assembly protein 1;3	Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes. Plants mutated in three ubiquitously expressed NAP1 genes (NAP1;1~NAP1;3) and organ-specifically expressed NAP1;4 gene show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. The NAP1 genes act synergistically with NRP genes in promoting somatic homologous recombination.	nucleosome assembly protein 1;(source:Araport11)
AT5G57040.1	protein_coding	Lactoylglutathione lyase / glyoxalase I family protein	Vicinal oxygen chelate (VOC) superfamily member. Responds to NaCl,drought and high light stress.	Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT5G56960.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding family protein		basic helix-loop-helix (bHLH) DNA-binding family protein;(source:Araport11)
AT5G57050.1	protein_coding	Protein phosphatase 2C family protein	Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo.	Protein phosphatase 2C family protein;(source:Araport11)
AT5G56970.1	protein_coding	cytokinin oxidase 3	It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase 3;(source:Araport11)
AT5G57060.1	protein_coding			60S ribosomal L18a-like protein;(source:Araport11)
AT5G56980.1	protein_coding			cotton fiber protein;(source:Araport11)
AT5G56990.1	protein_coding			proteinase inhibitor I25, cystatin, motif protein;(source:Araport11)
AT5G57000.1	protein_coding			DEAD-box ATP-dependent RNA helicase;(source:Araport11)
AT5G56920.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT5G57010.1	protein_coding	calmodulin-binding family protein		calmodulin-binding family protein;(source:Araport11)
AT5G56930.1	protein_coding	CCCH-type zinc finger family protein		CCCH-type zinc finger family protein;(source:Araport11)
AT5G48240.1	protein_coding			Rrp15p protein;(source:Araport11)
AT5G48160.1	protein_coding	Protein of unknown function (DUF1423)	Encodes a nuclear PHD finger protein that is functionally redundant with OBE1 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.	potyvirus VPg interacting protein (DUF1423);(source:Araport11)
AT5G48250.1	protein_coding	B-box type zinc finger protein with CCT domain		B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT5G48170.1	protein_coding	F-box family protein	encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism.	F-box family protein;(source:Araport11)
AT5G48180.1	protein_coding	nitrile specifier protein 5	Encodes a nitrile-specifier protein NSP5. NSP5 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.	nitrile specifier protein 5;(source:Araport11)
AT5G48270.1	protein_coding	Plant protein of unknown function (DUF868)		DUF868 family protein (DUF868);(source:Araport11)
AT5G48190.1	protein_coding	Domain of unknown function (DUF23)		glycosyltransferase family protein (DUF23);(source:Araport11)
AT5G48280.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G48200.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G48210.1	protein_coding	Protein of unknown function (DUF1278)		prolamin-like protein (DUF1278);(source:Araport11)
AT5G48130.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G48220.1	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT5G48140.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G48230.1	protein_coding	acetoacetyl-CoA thiolase 2	Encodes an acetoacetyl-CoA thiolase that generates the bulk of the acetoacetyl-CoA precursor needed for the cytosolic localized, mevalonate-derived isoprenoids biosynthetic pathway.  Loss-of-function mutants are embryo lethal.	acetoacetyl-CoA thiolase 2;(source:Araport11)
AT5G48150.1	protein_coding	GRAS family transcription factor	Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.	GRAS family transcription factor;(source:Araport11)
AT5G39630.1	protein_coding	Vesicle transport v-SNARE family protein		Vesicle transport v-SNARE family protein;(source:Araport11)
AT5G39550.1	protein_coding	Zinc finger (C3HC4-type RING finger) family protein	Encodes the VIM3/ORTH1 protein that is similar to VIM1. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. This protein functions as an E3 ubiquitin ligase in vitro with members of the UBC8 family E2s. Either of the two RING domains present in the protein can promote ubiquitylation in vitro, but, not the PHD domain. Over-expression of ORTH1/VIM3 leads to decreased levels of FWA methylation, increased levels of FWA transcripts, and delayed flowering. Cen180 repeats are also hypomethylated in plants overexpressing this protein.	Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT5G39640.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT5G39560.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G39650.1	protein_coding	Protein of unknown function (DUF679)	Target promoter of the male germline-specific transcription factor DUO1. Knock down mutants result in an aborted seed phenotype that is transmitted through the male.	transmembrane protein, putative (DUF679);(source:Araport11)
AT5G39570.1	protein_coding		Protein of unknown function. Binds phosphatidic acid and acts downstream of PLDalpha.	transmembrane protein;(source:Araport11)
AT5G39660.1	protein_coding	cycling DOF factor 2	Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.	cycling DOF factor 2;(source:Araport11)
AT5G39580.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G39670.1	protein_coding	Calcium-binding EF-hand family protein	Calmodulin like protein involved in negative regulation of pattern triggered immunity.	Calcium-binding EF-hand family protein;(source:Araport11)
AT5G39590.1	protein_coding	TLD-domain containing nucleolar protein		TLD-domain containing nucleolar protein;(source:Araport11)
AT5G39680.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G39600.1	protein_coding			39S ribosomal protein;(source:Araport11)
AT5G39690.1	protein_coding	NAC domain containing protein 93		NAC domain containing protein 93;(source:Araport11)
AT5G39610.1	protein_coding	NAC domain containing protein  6	Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves.  This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510.	NAC domain containing protein 6;(source:Araport11)
AT5G39700.1	protein_coding	myb domain protein 89	Encodes a putative transcription factor (MYB89).	myb domain protein 89;(source:Araport11)
AT5G39620.1	protein_coding	RAB GTPase homolog G1		RAB GTPase homolog G1;(source:Araport11)
AT5G39710.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G56660.1	protein_coding	IAA-leucine resistant (ILR)-like 2	encodes IAA-amino acid hydrolase that has a broad range of substrate specificity. It is most active on IAA-Ala among the IAA-conjugate hydrolases tested.	IAA-leucine resistant (ILR)-like 2;(source:Araport11)
AT5G56670.1	protein_coding	Ribosomal protein S30 family protein		Ribosomal protein S30 family protein;(source:Araport11)
AT5G56760.1	protein_coding	serine acetyltransferase 1;1	Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.	serine acetyltransferase 1;(source:Araport11)
AT5G56680.1	protein_coding	Class II aminoacyl-tRNA and biotin synthetases superfamily protein	Encodes a putative cytosolic asparaginyl-tRNA synthetase. The mRNA is cell-to-cell mobile.	Class II aminoacyl-tRNA and biotin synthetases superfamily protein;(source:Araport11)
AT5G56770.1	protein_coding			transcription repressor-like protein;(source:Araport11)
AT5G56610.1	protein_coding	Phosphotyrosine protein phosphatases superfamily protein	Encodes a phosphatidylglycerophosphate (PGP) phosphatase involved in the synthesis of plastidial Phosphatidylglycerol (PG) in conjunction with PGPP1 and PTPMT1 in root. For PTPMT2.1, lower expression levels were detected in leaf and stem as compared to the other tissues.	Phosphotyrosine protein phosphatases superfamily protein;(source:Araport11)
AT5G56690.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G56780.1	protein_coding	effector of transcription2	Encodes a transcriptional regulator that is required for the induction of dormancy during late seed development.ET2 contains DNA and Zinc binding domains and is involved in DNA methylation. ET2 may function in DNA repair.	effector of transcription2;(source:Araport11)
AT5G56620.1	protein_coding	NAC domain containing protein 99		NAC domain containing protein 99;(source:Araport11)
AT5G56700.1	protein_coding	FBD / Leucine Rich Repeat domains containing protein		FBD / Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G56790.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G56630.1	protein_coding	phosphofructokinase 7		phosphofructokinase 7;(source:Araport11)
AT5G56710.1	protein_coding	Ribosomal protein L31e family protein		Ribosomal protein L31e family protein;(source:Araport11)
AT5G56800.1	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT5G56640.1	protein_coding	myo-inositol oxygenase 5	Myo-Inositol Oxygenase gene family	myo-inositol oxygenase 5;(source:Araport11)
AT5G56720.1	protein_coding	Lactate/malate dehydrogenase family protein	predicted to encode a cytosolic malate dehydrogenase.	Lactate/malate dehydrogenase family protein;(source:Araport11)
AT5G56810.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G56650.1	protein_coding	IAA-leucine resistant (ILR)-like 1	encodes a protein similar to IAA conjugate hydrolases. Enzyme assays with purified GST-tagged protein shows some activity in vitro but too low to be physiologically significant.	IAA-leucine resistant (ILR)-like 1;(source:Araport11)
AT5G56730.1	protein_coding	Insulinase (Peptidase family M16) protein		Insulinase (Peptidase family M16) protein;(source:Araport11)
AT5G56820.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G56740.1	protein_coding	histone acetyltransferase of the GNAT family 2	Encodes an enzyme with histone acetyltransferase activity. Histone H4 is the primary substrate for the enzyme. Prior acetylation of  lysine 12 of histone H4 reduces radioactive acetylation by  HAG2. HAG2 acetylates histone H4 lysine 12.	histone acetyltransferase of the GNAT family 2;(source:Araport11)
AT5G56830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.7e-14 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT5G56750.1	protein_coding	N-MYC downregulated-like 1		N-MYC downregulated-like 1;(source:Araport11)
AT5G56840.1	protein_coding	myb-like transcription factor family protein		myb-like transcription factor family protein;(source:Araport11)
AT5G56850.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G35870.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G35880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32680.1);(source:TAIR10)
AT5G35800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to simiar to ribosomal protein, similar to unknown protein (gb|AAD32760.1);(source:TAIR10)
AT5G35890.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT5G35810.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G35900.1	protein_coding	LOB domain-containing protein 35		LOB domain-containing protein 35;(source:Araport11)
AT5G35820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G35910.1	protein_coding	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	Encodes a nuclear-localized RRP6-like protein whose mutation leads to accumulation of an rRNA maturation by-product.	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein;(source:Araport11)
AT5G35830.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G35840.1	protein_coding	phytochrome C	Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant  growth and development. The mRNA is cell-to-cell mobile.	phytochrome C;(source:Araport11)
AT5G35860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38037.1);(source:TAIR10)
AT5G51770.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G51780.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G51700.1	protein_coding	protein binding;zinc ion binding	Encodes a resistance signalling protein with two zinc binding (CHORD) domains that are highly conserved across eukaryotic phyla.  Mutant has reduced RPS5 and RPM1 mediated resistance. Potentially involved in transduction of R gene mediated disease resistance. Required for R protein accumulation.	cysteine and histidine-rich domain-containing protein RAR1;(source:Araport11)
AT5G51790.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G51710.1	protein_coding	K+ efflux antiporter 5	member of Putative potassium proton antiporter family	K+ efflux antiporter 5;(source:Araport11)
AT5G51800.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G51720.1	protein_coding	2 iron, 2 sulfur cluster binding	Encodes a protein with biochemical, structural, and biophysical characteristics of a NEET protein.  It plays a key role in plant development, senescence, reactive oxygen homeostasis, and Fe metabolism.	2 iron, 2 sulfur cluster binding protein;(source:Araport11)
AT5G51810.1	protein_coding	gibberellin 20 oxidase 2	Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.	gibberellin 20 oxidase 2;(source:Araport11)
AT5G51730.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G51820.1	protein_coding	phosphoglucomutase	Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional  PGM activity that is required for full development of amyloplasts.	phosphoglucomutase;(source:Araport11)
AT5G51740.1	protein_coding	Peptidase family M48 family protein	Mitochondrial ATP-independent protease .Important for maintenance of proper function of the oxphos system.	Peptidase family M48 family protein;(source:Araport11)
AT5G51830.1	protein_coding	pfkB-like carbohydrate kinase family protein	Encodes one of the several Arabidopsis fructokinases. Nomenclature according to Riggs 2017 has been adopted for the family by the community (personal communication, Boernke, Callis, Granot, Boernke, and Smeekens). Important for seed oil accumulation and vascular development.	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT5G51750.1	protein_coding	subtilase 1.3		subtilase 1.3;(source:Araport11)
AT5G51760.1	protein_coding	Protein phosphatase 2C family protein	Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C).  Expressed in seeds.  AHG1 functions in seed development and germination.	Protein phosphatase 2C family protein;(source:Araport11)
AT5G51840.1	protein_coding			junctophilin-like protein;(source:Araport11)
AT5G51850.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G51860.1	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a MADS-box transcription factor involved in floral transition.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G42800.1	protein_coding	dihydroflavonol 4-reductase	dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. Not expressed in roots (qRT-PCR). The mRNA is cell-to-cell mobile.	dihydroflavonol 4-reductase;(source:Araport11)
AT5G42720.1	protein_coding	Glycosyl hydrolase family 17 protein		Glycosyl hydrolase family 17 protein;(source:Araport11)
AT5G42810.1	protein_coding	inositol-pentakisphosphate 2-kinase 1	Encodes an inositol tetra-/pentaphosphate 2-kinase, involved in the biosynthesis of phytic acid, a regulator of intracellular signaling, a highly abundant animal antinutrient, and a phosphate and mineral storage compound in plant seeds. Is also required for growth and modulates phosphate homeostasis at the transcriptional level.	inositol-pentakisphosphate 2-kinase 1;(source:Araport11)
AT5G42730.1	pseudogene		pseudogene similar to ACT domain-containing protein, similar to F-box family protein	pseudogene of flavin-binding;(source:Araport11)
AT5G42820.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein	U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35.    U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G42660.1	protein_coding	Protein of unknown function (DUF616)		DNA-directed RNA polymerase subunit beta (DUF616);(source:Araport11)
AT5G42740.1	protein_coding	Sugar isomerase (SIS) family protein		Sugar isomerase (SIS) family protein;(source:Araport11)
AT5G42670.1	protein_coding	Agenet domain-containing protein		Agenet domain-containing protein;(source:Araport11)
AT5G42750.1	protein_coding	BRI1 kinase inhibitor 1	Encodes a plasma-membrane associated phosphoprotein that interacts directly with the kinase domain of BRI1 through the evolutionarily conserved C-terminal BIM motif binding to the C-lobe of the BRI1 kinase domain. It interferes with the interaction between BRI1 with its signalling partner, the plasma membrane localised LRR-receptor kinase BAK1 by inhibiting the transphosphorylation to keep BRI1 at a basal level of activity. It is phosphorylated by BRI1 at Ser270 & Ser274 and at tyrosine site Tyr211 and dissociates from plasma membrane to end up in the cytosol after phosphorylation. Its loss-of-function mutant shows higher sensitivity to BR treatment.	BRI1 kinase inhibitor 1;(source:Araport11)
AT5G42680.1	protein_coding	Protein of unknown function, DUF617		MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT5G42760.1	protein_coding	Leucine carboxyl methyltransferase		Leucine carboxyl methyltransferase;(source:Araport11)
AT5G42690.1	protein_coding	Protein of unknown function, DUF547		transcription factor, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G42770.1	protein_coding	Maf-like protein		Maf-like protein;(source:Araport11)
AT5G42700.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G42780.1	protein_coding	homeobox protein 27		homeobox protein 27;(source:Araport11)
AT5G42710.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G42790.1	protein_coding	proteasome alpha subunit F1	encodes a protein with extensive homology to the largest subunit of the multicatalytic proteinase complex (proteasome). Negatively regulates thiol biosynthesis and arsenic tolerance.	proteasome alpha subunit F1;(source:Araport11)
AT5G57320.1	protein_coding	villin, putative		actin filament bundling protein P-115-ABP protein;(source:Araport11)
AT5G57240.1	protein_coding	OSBP(oxysterol binding protein)-related protein 4C		OSBP(oxysterol binding protein)-related protein 4C;(source:Araport11)
AT5G57330.1	protein_coding	Galactose mutarotase-like superfamily protein		Galactose mutarotase-like superfamily protein;(source:Araport11)
AT5G57250.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G57340.1	protein_coding			ras guanine nucleotide exchange factor Q-like protein;(source:Araport11)
AT5G57260.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 10	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 10;(source:Araport11)
AT5G57350.1	protein_coding	H(+)-ATPase 3	member of Plasma membrane H+-ATPase family	H[+]-ATPase 3;(source:Araport11)
AT5G57270.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G57280.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Gene encodes a methyltransferase-like protein involved in pre-rRNA processing.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G57290.1	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT5G57300.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G57220.1	protein_coding	cytochrome P450, family 81, subfamily F, polypeptide 2	member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi. The mRNA is cell-to-cell mobile.	cytochrome P450, family 81, subfamily F, polypeptide 2;(source:Araport11)
AT5G57230.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT5G42000.1	protein_coding	ORMDL family protein		ORMDL family protein;(source:Araport11)
AT5G42010.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G42100.1	protein_coding	beta-1,3-glucanase_putative	encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd	beta-1,3-glucanase;(source:Araport11)
AT5G42020.1	protein_coding	Heat shock protein 70 (Hsp 70) family protein	Luminal binding protein (BiP2) involved in polar nuclei fusion during proliferation of endosperm nuclei.	Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT5G42110.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G41950.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G42030.1	protein_coding	ABL interactor-like protein 4		ABL interactor-like protein 4;(source:Araport11)
AT5G42200.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G42120.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G41960.1	protein_coding			zinc finger matrin-type protein;(source:Araport11)
AT5G42040.1	protein_coding	regulatory particle non-ATPase 12B		regulatory particle non-ATPase 12B;(source:Araport11)
AT5G42130.1	protein_coding	Mitochondrial substrate carrier family protein	Encodes a protein belonging to the mitochondrial carrier family and similar to animal mitoferrin but likely NOT to be located in the mitochondria, but rather in chloroplasts. It is likely to be involved in transporting iron into the chloroplast.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G41970.1	protein_coding	Metal-dependent protein hydrolase		Metal-dependent protein hydrolase;(source:Araport11)
AT5G42050.1	protein_coding	DCD (Development and Cell Death) domain protein	Stress responsive asparagine-rich protein. Binds to PevD (Verticillium dahliae ) fungal effector protein. NRP interacts  with CRY2, leading to increased cytoplasmic accumulation of CRY2 in a blue light-independent manner (PMID:28633330).NRP also binds FyPP3 and recruits it to endosomes and thus targets it for degradation.	DCD (Development and Cell Death) domain protein;(source:Araport11)
AT5G42140.1	protein_coding	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain		Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT5G41980.1	protein_coding			nuclease;(source:Araport11)
AT5G42060.1	protein_coding	DEK, chromatin associated protein		DEK, chromatin associated protein;(source:Araport11)
AT5G42150.1	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT5G41990.1	protein_coding	with no lysine (K) kinase 8	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Interacts specifically with and phosphorylates AtVHA-C, subunit C of the vacuolar H+-ATPase.	with no lysine (K) kinase 8;(source:Araport11)
AT5G42070.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G42080.1	protein_coding	dynamin-like protein	Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching.  Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.	dynamin-like protein;(source:Araport11)
AT5G42170.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT5G42090.1	protein_coding	Lung seven transmembrane receptor family protein		Lung seven transmembrane receptor family protein;(source:Araport11)
AT5G42180.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G42190.1	protein_coding	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis.	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein;(source:Araport11)
AT5G35660.1	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT5G35610.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT5G35620.1	protein_coding	Eukaryotic initiation factor 4E protein	Cap-binding protein, binds to the 5' cap structure of nuclear-encoded mRNAs.  Mutant is resistant to potyvirus infection.	Eukaryotic initiation factor 4E protein;(source:Araport11)
AT5G35630.1	protein_coding	glutamine synthetase 2	chloroplastic glutamine synthetase The mRNA is cell-to-cell mobile.	glutamine synthetase 2;(source:Araport11)
AT5G35640.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT5G35650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27800.1);(source:TAIR10)
AT5G48470.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G48390.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Defective in meiotic chromosome segregation. It is involved in crossover formation and involved in both male and female meiosis.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G48480.1	protein_coding	Lactoylglutathione lyase / glyoxalase I family protein		Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT5G48400.1	protein_coding	Glutamate receptor family protein	member of Putative ligand-gated ion channel subunit family	Glutamate receptor family protein;(source:Araport11)
AT5G48410.1	protein_coding	glutamate receptor 1.3	member of Putative ligand-gated ion channel subunit family	glutamate receptor 1.3;(source:Araport11)
AT5G48490.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a protein with similarity to a lipid transfer protein that may contribute to systemic acquired resistance (SAR).	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G48420.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G48500.1	protein_coding			pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein;(source:Araport11)
AT5G48430.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G48510.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT5G48520.1	protein_coding		Encodes AUGMIN subunit3 (AUG3), a homolog of animal dim gamma-tubulin 3/human augmin-like complex, subunit 3. Plays a critical role in microtubule organization during plant cell division.	HAUS augmin-like complex subunit;(source:Araport11)
AT5G48440.1	protein_coding	FAD-dependent oxidoreductase family protein		FAD-dependent oxidoreductase family protein;(source:Araport11)
AT5G48530.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G48450.1	protein_coding	SKU5  similar 3	Encodes a protein with two DUF26 domains and a signal peptide for secretion. The protein is transported to the apoplast when it is expressed as a GFP fusion protein.	SKU5 similar 3;(source:Araport11)
AT5G48540.1	protein_coding	receptor-like protein kinase-related family protein		receptor-like protein kinase-related family protein;(source:Araport11)
AT5G48460.1	protein_coding	Actin binding Calponin homology (CH) domain-containing protein	Encodes a member of the fimbrin family. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	Actin binding Calponin homology (CH) domain-containing protein;(source:Araport11)
AT5G37130.1	protein_coding	Protein prenylyltransferase superfamily protein		Protein prenylyltransferase superfamily protein;(source:Araport11)
AT5G37140.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G37150.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G37070.1	protein_coding	Protein of unknown function, DUF538		hypothetical protein (Protein of unknown function, DUF538);(source:Araport11)
AT5G37160.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop nucleoside triphosphate hydrolase superfamily protein;(source:Araport11)
AT5G37080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05090.1);(source:TAIR10)
AT5G37170.1	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT5G37090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05087.1);(source:TAIR10)
AT5G37180.1	protein_coding	sucrose synthase 5	Encodes a protein with sucrose synthase activity (SUS5).	sucrose synthase 5;(source:Araport11)
AT5G37100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05084.1);(source:TAIR10)
AT5G37190.1	protein_coding	COP1-interacting protein 4	COP1-interacting protein 4, a nuclear-localized positive regulator of arabidopsis photomorphogenesis	COP1-interacting protein 4;(source:Araport11)
AT5G37110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1);(source:TAIR10)
AT5G37120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18420.1);(source:TAIR10)
AT5G62970.1	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT5G62980.1	protein_coding	Dihydroneopterin aldolase	Encodes an enzyme that can act as a aldolase or an epimerase for 7,8-dihydroneopterin and  7,8-dihydromonapterin in vitro. It is likely to act in folate biosynthesis as a homooctamer in vivo.	Dihydroneopterin aldolase;(source:Araport11)
AT5G62990.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein	Nucleus-encoded RNA-binding protein which exists only in embryophytes, catalyzes nuclear pre-mRNA and chloroplast group II intron splicing.	Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT5G63000.1	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein		Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT5G63010.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G63020.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G63030.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT5G63040.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G05710.1	protein_coding	Pleckstrin homology (PH) domain superfamily protein		Pleckstrin homology (PH) domain superfamily protein;(source:Araport11)
AT5G05720.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G05810.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G05730.1	protein_coding	anthranilate synthase alpha subunit 1	ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis.  ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots.	anthranilate synthase alpha subunit 1;(source:Araport11)
AT5G05820.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT5G05740.1	protein_coding	ethylene-dependent gravitropism-deficient and yellow-green-like 2	S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442–454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171–179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.	ethylene-dependent gravitropism-deficient and yellow-green-like 2;(source:Araport11)
AT5G05660.1	protein_coding	sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors	Encodes a homolog of the mammalian zinc finger transcription factor NF-X1.	NF-X1-type zinc finger protein NFXL2;(source:Araport11)
AT5G05830.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G05750.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G05670.1	protein_coding	signal recognition particle binding		signal recognition particle binding protein;(source:Araport11)
AT5G05840.1	protein_coding	Protein of unknown function (DUF620)		replication factor C subunit, putative (DUF620);(source:Araport11)
AT5G05760.1	protein_coding	syntaxin of plants 31	A SNARE protein (ortholog of syntaxin 5), a membrane fusion machine component involved in cytokinesis	syntaxin of plants 31;(source:Araport11)
AT5G05680.1	protein_coding	nuclear pore complex protein-related	Encodes MOS7 (Modifier of snc1,7), homologous to human and Drosophila melanogaster nucleoporin Nup88.  Resides at the nuclear envelope. Modulates the nuclear concentrations of certain defense proteins regulates defense outputs.	nuclear pore complex protein-like protein;(source:Araport11)
AT5G05850.1	protein_coding	plant intracellular ras group-related LRR 1	Encodes PIRL1, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.	plant intracellular ras group-related LRR 1;(source:Araport11)
AT5G05770.1	protein_coding	WUSCHEL related homeobox 7	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.	WUSCHEL related homeobox 7;(source:Araport11)
AT5G05690.1	protein_coding	Cytochrome P450 superfamily protein	Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis.  Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in <i>bri1</i> mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.	Cytochrome P450 superfamily protein;(source:Araport11)
AT5G05860.1	protein_coding	UDP-glucosyl transferase 76C2	Encodes a cytokinin N-glucosyltransferase that is involved in cytokinin homeostasis and cytokinin response in planta through cytokinin N-glucosylation. Expression is induced by ABA, mannitol and drought stress. Analysis of overexpressors and loss of function mutants indicate a role in response to osmotic and drought stress.	UDP-glucosyl transferase 76C2;(source:Araport11)
AT5G05780.1	protein_coding	RP non-ATPase subunit 8A	Encodes a putative 26S proteasome subunit RPN8a.  The function of RPN8a and other 26S subunits may be required for specifying leaf adaxial identity. The mRNA is cell-to-cell mobile.	RP non-ATPase subunit 8A;(source:Araport11)
AT5G05700.1	protein_coding	arginine-tRNA protein transferase 1	Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2.  Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6).  PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence and altered responses to pathogens.	arginine-tRNA protein transferase 1;(source:Araport11)
AT5G05790.1	protein_coding	Duplicated homeodomain-like superfamily protein		Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT5G05800.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT5G51890.1	protein_coding	Peroxidase superfamily protein	encodes peroxidase involved in the lignification of tracheary elements (TE) in roots	Peroxidase superfamily protein;(source:Araport11)
AT5G51900.1	protein_coding	Cytochrome P450 family protein		Cytochrome P450 family protein;(source:Araport11)
AT5G51910.1	protein_coding	TCP family transcription factor 		TCP family transcription factor;(source:Araport11)
AT5G51920.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT5G54140.1	protein_coding	IAA-leucine-resistant (ILR1)-like 3	encodes a protein similar to IAA amino acid conjugate hydrolase	IAA-leucine-resistant (ILR1)-like 3;(source:Araport11)
AT5G54070.1	protein_coding	heat shock transcription factor  A9	A member of Heat Stress Transcription Factor (Hsf) family. Not responding to heat stress. Is regulated by the seed-specific transcription factor ABI3. In turn, it regulates other heat stress proteins including Hsp17.4-CI, Hsp17.7-CII and Hsp101 during seed maturation.	heat shock transcription factor A9;(source:Araport11)
AT5G54080.1	protein_coding	homogentisate 1,2-dioxygenase	Encodes a homogentisate 1,2-dioxygenase that can convert homogentisate to malylacetoacetate and is likely to be involved in tyrosine catabolism.	homogentisate 1,2-dioxygenase;(source:Araport11)
AT5G54090.1	protein_coding	DNA mismatch repair protein MutS, type 2		DNA mismatch repair protein MutS, type 2;(source:Araport11)
AT5G54100.1	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT5G54110.1	protein_coding	membrane-associated mannitol-induced	Encodes a highly polar protein with more than 60% hydrophilic amino acid residues that is associated with the plasma membrane.  It has limited secondary structure similarity to VAP-33 from Aplysia, which may be involved in membrane trafficking. The mRNA is cell-to-cell mobile.	membrane-associated mannitol-induced;(source:Araport11)
AT5G38730.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G38740.1	protein_coding	AGAMOUS-like 77		AGAMOUS-like 77;(source:Araport11)
AT5G38750.1	protein_coding	asparaginyl-tRNA synthetase family		asparaginyl-tRNA synthetase family;(source:Araport11)
AT5G38760.1	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT5G38770.1	protein_coding	glutamine dumper 7	Encodes a member of the GDU (glutamine dumper) family proteins involved in amino acid export: At4g31730 (GDU1), At4g25760 (GDU2), At5g57685 (GDU3), At2g24762 (GDU4), At5g24920 (GDU5), At3g30725 (GDU6) and At5g38770 (GDU7).	glutamine dumper 7;(source:Araport11)
AT5G38780.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	SABATH methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G38710.1	protein_coding	Methylenetetrahydrofolate reductase family protein		Methylenetetrahydrofolate reductase family protein;(source:Araport11)
AT5G38790.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G38720.1	protein_coding		RRP7 shares limited sequence similarity to human and yeast RRP7. In Arabidopsis RRP7 functions in 18S ribosomal RNA maturation.	ribosomal RNA-processing 7 protein;(source:Araport11)
AT5G23250.1	protein_coding	Succinyl-CoA ligase, alpha subunit		Succinyl-CoA ligase, alpha subunit;(source:Araport11)
AT5G23170.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G23260.1	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat.  Also shown to be necessary for determining the identity of the endothelial layer within the ovule.  Paralogous to GOA. Plays a maternal role in fertilization and seed development.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G23180.1	protein_coding			mediator-associated-like protein;(source:Araport11)
AT5G23350.1	protein_coding	GRAM domain-containing protein / ABA-responsive protein-related		GRAM domain protein/ABA-responsive-like protein;(source:Araport11)
AT5G23270.1	protein_coding	sugar transporter 11	Membrane localized sucrose transporter.	sugar transporter 11;(source:Araport11)
AT5G23190.1	protein_coding	cytochrome P450, family 86, subfamily B, polypeptide 1	cytochrome P450 CYP86B1, nuclear gene for chloroplast product.  CYP86B1 is a very long chain fatty acid hydroxylase specifically involved in polyester monomer biosynthesis during the course of plant development.	cytochrome P450, family 86, subfamily B, polypeptide 1;(source:Araport11)
AT5G23360.1	protein_coding	GRAM domain-containing protein / ABA-responsive protein-related		GRAM domain-containing protein / ABA-responsive protein-like protein;(source:Araport11)
AT5G23280.1	protein_coding	TCP family transcription factor	Transcription factor which plays an important role during leaf and hypocotyl development, redundantly, with at least six class I TCPs, and regulates the expression of CYCD1;1 to affect endoreplication.	TCP family transcription factor;(source:Araport11)
AT5G23200.1	protein_coding			C5orf35;(source:Araport11)
AT5G23370.1	protein_coding	GRAM domain-containing protein / ABA-responsive protein-related		GRAM domain-containing protein / ABA-responsive protein-like protein;(source:Araport11)
AT5G23290.1	protein_coding	prefoldin 5		prefoldin 5;(source:Araport11)
AT5G23210.1	protein_coding	serine carboxypeptidase-like 34		serine carboxypeptidase-like 34;(source:Araport11)
AT5G23300.1	protein_coding	pyrimidine d	dihydroorotate dehydrogenase, catalyses fourth step of pyrimidine biosynthesis	pyrimidine d;(source:Araport11)
AT5G23220.1	protein_coding	nicotinamidase 3		nicotinamidase 3;(source:Araport11)
AT5G23310.1	protein_coding	Fe superoxide dismutase 3	Fe superoxide dismutase	Fe superoxide dismutase 3;(source:Araport11)
AT5G23230.1	protein_coding	nicotinamidase 2		nicotinamidase 2;(source:Araport11)
AT5G23320.1	protein_coding	homolog of yeast STE14 A	Encodes a prenylcysteine alpha-carboxyl methyltransferase involved in methylation of isoprenylated proteins. This protein appears to have lower catalytic activity and a lower transcript expression level than the other ICMT present in Arabidopsis (At5g08335). Analysis of ICMT RNAi lines suggests that this protein may be involved in flower and stem development.	S-isoprenylcysteine O-methyltransferase;(source:Araport11)
AT5G23240.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G23330.1	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT5G23340.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT5G39810.1	protein_coding	AGAMOUS-like 98		AGAMOUS-like 98;(source:Araport11)
AT5G39820.1	protein_coding	NAC domain containing protein 94		NAC domain containing protein 94;(source:Araport11)
AT5G39750.1	protein_coding	AGAMOUS-like 81		AGAMOUS-like 81;(source:Araport11)
AT5G39760.1	protein_coding	homeobox protein 23	Functions together with TZP in co-regulation of the expression of blue-light dependent transcriptional regulators. Coassociates with and regulates the expression of light-regulated loci as well as transcriptional regulators to shape plant development in response to environmental stimuli with targets in RNA processing factors as well as proteins involved in salt stress and ABA signaling, in addition to embryo development. Acts downstream of TZP action with regard to blue-light-regulated hypocotyl elongation.	homeobox protein 23;(source:Araport11)
AT5G39770.1	protein_coding	Restriction endonuclease, type II-like superfamily protein	Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).	Restriction endonuclease, type II-like superfamily protein;(source:Araport11)
AT5G39790.1	protein_coding	5'-AMP-activated protein kinase-related	Encodes a chloroplast localized protein that is involved in protein translocation and starch metabolism. PTST helps localize GBSS to the starch granules where GBSS functions in amylose biosynthesis.	PROTEIN TARGETING TO STARCH (PTST);(source:Araport11)
AT5G39800.1	protein_coding	Mitochondrial ribosomal protein L27		Mitochondrial ribosomal protein L27;(source:Araport11)
AT5G56550.1	protein_coding	oxidative stress 3	Encodes OXIDATIVE STRESS 3 (OXS3)&#65292; involved in tolerance to heavy metals and oxidative stress.	oxidative stress 3;(source:Araport11)
AT5G56560.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G56520.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G56530.1	protein_coding	Protein of Unknown Function (DUF239)		tRNA-splicing ligase (DUF239);(source:Araport11)
AT5G56540.1	protein_coding	arabinogalactan protein 14	Encodes arabinogalactan protein (AGP14). Mutants exhibit longer root hairs. The mRNA is cell-to-cell mobile.	arabinogalactan protein 14;(source:Araport11)
AT5G17170.1	protein_coding	rubredoxin family protein		rubredoxin family protein;(source:Araport11)
AT5G17260.1	protein_coding	NAC domain containing protein 86		NAC domain containing protein 86;(source:Araport11)
AT5G17180.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G17270.1	protein_coding	Protein prenylyltransferase superfamily protein		Protein prenylyltransferase superfamily protein;(source:Araport11)
AT5G17190.1	protein_coding			B-cell receptor-associated-like protein;(source:Araport11)
AT5G17280.1	protein_coding			oxidoreductase-like protein, amino-terminal protein;(source:Araport11)
AT5G17200.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G17290.1	protein_coding	autophagy protein Apg5 family	Autophagy protein ATG5. Forms a conjugate with ATG12 with an essential role in plant nutrient recycling. Mutants missing ATG5 display early senescence and are hypersensitive to nitrogen or carbon starvation, accompanied by a more rapid loss of organellar and cytoplasmic proteins.	autophagy protein Apg5 family;(source:Araport11)
AT5G17210.1	protein_coding	Protein of unknown function (DUF1218)		transmembrane protein, putative (DUF1218);(source:Araport11)
AT5G17300.1	protein_coding	Homeodomain-like superfamily protein	Myb-like transcription factor that regulates hypocotyl growth by  regulating free auxin levels in a time-of-day specific manner.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G17220.1	protein_coding	glutathione S-transferase phi 12	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. Likely to function as a carrier to transport anthocyanin from the cytosol to tonoplasts.	glutathione S-transferase phi 12;(source:Araport11)
AT5G17310.1	protein_coding	UDP-glucose pyrophosphorylase 2		UDP-glucose pyrophosphorylase 2;(source:Araport11)
AT5G17230.1	protein_coding	PHYTOENE SYNTHASE	Encodes phytoene synthase that is the rate-limiting enzyme in the carotenoid biosynthetic pathway and that interacts with the ORANGE (OR) protein.  PSY's expression is posttransciptionally regulated by OR.	PHYTOENE SYNTHASE;(source:Araport11)
AT5G17320.1	protein_coding	homeodomain GLABROUS 9	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	homeodomain GLABROUS 9;(source:Araport11)
AT5G17240.1	protein_coding	SET domain group 40		SET domain group 40;(source:Araport11)
AT5G17330.1	protein_coding	glutamate decarboxylase	Encodes one of two isoforms of glutamate decarboxylase. The mRNA is cell-to-cell mobile.	glutamate decarboxylase;(source:Araport11)
AT5G17250.1	protein_coding	Alkaline-phosphatase-like family protein		Alkaline-phosphatase-like family protein;(source:Araport11)
AT5G17340.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT5G63550.1	protein_coding	DEK domain-containing chromatin associated protein		DEK domain-containing chromatin associated protein;(source:Araport11)
AT5G63470.1	protein_coding	nuclear factor Y, subunit C4	Encodes a member of class of transcription regulators that his highly conserved across many plant species.In Arabidopsis and rice, NF-YC4 interacts with other members of this class and CO to regulate flowering. In Arabidopsis, it interacts with QQS to regulate C/N partitioning.	nuclear factor Y, subunit C4;(source:Araport11)
AT5G63480.1	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT5G63490.1	protein_coding	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein		CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein;(source:Araport11)
AT5G63420.1	protein_coding	RNA-metabolising metallo-beta-lactamase family protein	Encodes a member of the metallo-beta-lactamase protein family that plays a vital role in embryo morphogenesis and apical-basal pattern formation by regulating chloroplast development. In bacteria, RNase J plays an important role in rRNA maturation and in the 5&#8242; stability of mRNA.	RNA-metabolising metallo-beta-lactamase family protein;(source:Araport11)
AT5G63500.1	protein_coding	Protein of unknown function (DUF 3339)		transmembrane protein, putative (DUF 3339);(source:Araport11)
AT5G63510.1	protein_coding	gamma carbonic anhydrase like 1	Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.	gamma carbonic anhydrase like 1;(source:Araport11)
AT5G63520.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT5G63440.1	protein_coding	Protein of unknown function (DUF167)	Encodes a single copy protein in Arabidopsis containing a DUF167 domain that is conserved in eukaryotes.  Genetically CSU suppresses mutations in COP1.  In vitro, it interacts with CACTIN and in vivo with CCA1. CSU4 promotes photomorphogenesis via negative regulation of CCA1 and PIF4 expression.	hypothetical protein (DUF167);(source:Araport11)
AT5G63530.1	protein_coding	farnesylated protein 3	Farnesylated protein that binds metals.	farnesylated protein 3;(source:Araport11)
AT5G63450.1	protein_coding	cytochrome P450, family 94, subfamily B, polypeptide 1		cytochrome P450, family 94, subfamily B, polypeptide 1;(source:Araport11)
AT5G63540.1	protein_coding	Domain of unknown function (DUF1767)	Encodes RMI1.  Suppresses somatic crossovers.  Essential for resolution of meiotic recombination intermediates.	recQ-mediated instability protein (DUF1767);(source:Araport11)
AT5G63460.1	protein_coding	SAP domain-containing protein	Enhances ABA response and plant drought tolerance by modulating the stability and localization of c2-domain ABA-related proteins.LOT1 regulates plant tolerance to drought stress by affecting ABA signaling through regulating the stability and dynamic localization of CAR9 (PMID:31102784).	SAP domain-containing protein;(source:Araport11)
AT5G24130.1	protein_coding			polypyrimidine tract-binding-like protein;(source:Araport11)
AT5G24140.1	protein_coding	squalene monooxygenase 2	Encodes a protein with similarity to squalene monoxygenases.	squalene monooxygenase 2;(source:Araport11)
AT5G36930.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G36940.1	protein_coding	cationic amino acid transporter 3	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.  Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs.	cationic amino acid transporter 3;(source:Araport11)
AT5G36950.1	protein_coding	DegP protease 10	Encodes a putative DegP protease.	DegP protease 10;(source:Araport11)
AT5G36960.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G36980.1	protein_coding			U3 small nucleolar RNA-associated protein;(source:Araport11)
AT5G36970.1	protein_coding	NDR1/HIN1-like 25	NDR1/HIN1-like protein, expression induced during incompatible response to a pathogen, expression is at least partly dependent on the salicylic acid signaling pathway	NDR1/HIN1-like 25;(source:Araport11)
AT5G36990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 8.5e-61 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G36910.1	protein_coding	thionin 2.2	Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation.  Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	thionin 2.2;(source:Araport11)
AT5G36920.1	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT5G44220.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G44140.1	protein_coding	prohibitin 7		prohibitin 7;(source:Araport11)
AT5G44230.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G44150.1	protein_coding		Connects together with RST1 the cytosolic RNA exosome to the Ski complex.	phosphorelay protein;(source:Araport11)
AT5G44240.1	protein_coding	aminophospholipid ATPase 2	Expression is upregulated in the shoot of cax1/cax3 mutant. The mRNA is cell-to-cell mobile.	aminophospholipid ATPase 2;(source:Araport11)
AT5G44160.1	protein_coding	C2H2-like zinc finger protein	NUC is a member of the BIRD group of transcriptional regulators and is required for the formative divisions that pattern the root.  the ground tissue into cortex and endodermis.	C2H2-like zinc finger protein;(source:Araport11)
AT5G44250.1	protein_coding	Protein of unknown function DUF829, transmembrane 53		peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53);(source:Araport11)
AT5G44170.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G44180.1	protein_coding	Homeodomain-like transcriptional regulator		Homeodomain-like transcriptional regulator;(source:Araport11)
AT5G44100.1	protein_coding	casein kinase I-like 7	Member of CKL gene family. Expression up-regulated under high temperature in anthers. Transcription activated by MYB24.	casein kinase I-like 7;(source:Araport11)
AT5G44190.1	protein_coding	GOLDEN2-like 2	Encodes GLK2, Golden2-like 2, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner.  GLK1, Golden2-like 1, is encoded by At2g20570. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.	GOLDEN2-like 2;(source:Araport11)
AT5G44110.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a member of the NAP subfamily of ABC transporters whose expression pattern is regulated by light and sucrose.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G44200.1	protein_coding	CAP-binding protein 20	Encodes a nuclear cap-binding protein that forms a heterodimeric complex with ABH1 (ATCBP80) and is likely to participate in RNA metabolism. Its mRNA is ubiquitously expressed.Loss of function mutations suggest a role in processing of pri-miRNA and mRNA splicing.	CAP-binding protein 20;(source:Araport11)
AT5G44120.1	protein_coding	RmlC-like cupins superfamily protein	Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	RmlC-like cupins superfamily protein;(source:Araport11)
AT5G44210.1	protein_coding	erf domain protein 9	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	erf domain protein 9;(source:Araport11)
AT5G44130.1	protein_coding	FASCICLIN-like arabinogalactan protein 13 precursor	Fasciclin-like arabinogalactan protein. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan protein 13 precursor;(source:Araport11)
AT5G43160.1	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT5G43080.1	protein_coding	Cyclin A3;1		Cyclin A3;(source:Araport11)
AT5G43170.1	protein_coding	zinc-finger protein 3	Encodes zinc finger protein.  mRNA levels are elevated in response to high salinity and low temperature. The protein is localized to the nucleus and acts as a transcriptional repressor.	zinc-finger protein 3;(source:Araport11)
AT5G43090.1	protein_coding	pumilio 13	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 13;(source:Araport11)
AT5G43100.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G43110.1	protein_coding	pumilio 14	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 14;(source:Araport11)
AT5G43120.1	protein_coding	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein		ARM-repeat/Tetratricopeptide repeat (TPR)-like protein;(source:Araport11)
AT5G43040.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G43130.1	protein_coding	TBP-associated factor 4		TBP-associated factor 4;(source:Araport11)
AT5G43050.1	protein_coding	Protein of unknown function (DUF565)	Chloroplast localized YCF20-like gene involved in nonphotochemical quenching. Has overlapping functions with npq7 The mRNA is cell-to-cell mobile.	YCF20-like protein (DUF565);(source:Araport11)
AT5G43140.1	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT5G43060.1	protein_coding	Granulin repeat cysteine protease family protein	Peptidase, activity detected in extracts of root, leaf and cell culture.	Granulin repeat cysteine protease family protein;(source:Araport11)
AT5G43150.1	protein_coding			elongation factor;(source:Araport11)
AT5G43070.1	protein_coding	WPP domain protein 1	WPP family members contains an NE targeting domain. This domain, called the WPP domain  after a highly conserved Trp-Pro-Pro motif, is necessary and sufficient for NE targeting of WPP1. RNAi suppression of WPP1 resulted in reduced mitotic activity.	WPP domain protein 1;(source:Araport11)
AT5G62360.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein	Pectin methylesterase inhibitor expressed throughout the plant.	Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G62370.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G62280.1	protein_coding	Protein of unknown function (DUF1442)		DUF1442 family protein (DUF1442);(source:Araport11)
AT5G62290.1	protein_coding	nucleotide-sensitive chloride conductance regulator (ICln) family protein		nucleotide-sensitive chloride conductance regulator (ICln) family protein;(source:Araport11)
AT5G62380.1	protein_coding	NAC-domain protein 101	Encodes a NAC-domain transcription factor involved in xylem formation. Induces transdifferentiation of various cells into metaxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.	NAC-domain protein 101;(source:Araport11)
AT5G62220.1	protein_coding	glycosyltransferase 18	Encodes a Golgi apparatus-localized galactosyltransferase involved in galactosyl-substitution of xyloglucan at position 2.	glycosyltransferase 18;(source:Araport11)
AT5G62300.1	protein_coding	Ribosomal protein S10p/S20e family protein		Ribosomal protein S10p/S20e family protein;(source:Araport11)
AT5G62390.1	protein_coding	BCL-2-associated athanogene 7	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. Localized to the ER. Necessary for the proper maintenance of the unfolded protein response during heat and cold tolerance.	BCL-2-associated athanogene 7;(source:Araport11)
AT5G62230.1	protein_coding	ERECTA-like 1	Encodes a receptor-like kinase that, together with ER and ERL2 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. Along with erl2 functionally compensates for loss of erecta during integument development. Its transcript levels change after inducing MUTE expression in a mute background.	ERECTA-like 1;(source:Araport11)
AT5G62310.1	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein	Encodes a protein with a serine/threonine kinase domain.  There are two other closely related members in Arabidopsis. Knock-out mutation results in incomplete root hair elongation. Expression is found all organs examined but is especially strong in elongating root hairs.	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT5G62400.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G62240.1	protein_coding	Cell cycle regulated microtubule associated protein		Cell cycle regulated microtubule associated protein;(source:Araport11)
AT5G62320.1	protein_coding	myb domain protein 99	Encodes a putative transcription factor (MYB99).	myb domain protein 99;(source:Araport11)
AT5G62410.1	protein_coding	structural maintenance of chromosomes 2	SMC2-1 (SMC2)	structural maintenance of chromosomes 2;(source:Araport11)
AT5G62250.1	protein_coding	microtubule-associated protein 65-9		microtubule-associated protein 65-9;(source:Araport11)
AT5G62330.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G62260.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT5G62340.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G62270.1	protein_coding			ribosomal protein L20;(source:Araport11)
AT5G62350.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G59970.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT5G59880.1	protein_coding	actin depolymerizing factor 3	Encodes actin depolymerizing factor 3 (ADF3).	actin depolymerizing factor 3;(source:Araport11)
AT5G59810.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT5G59890.1	protein_coding	actin depolymerizing factor 4	actin depolymerizing factor 4 (ADF4) mRNA, complete cds	actin depolymerizing factor 4;(source:Araport11)
AT5G59980.1	protein_coding	Polymerase/histidinol phosphatase-like	Encodes a predicted protein subunit of RNases P/MRP that plays a role in female gametophyte development and male competence.	Polymerase/histidinol phosphatase-like protein;(source:Araport11)
AT5G59820.1	protein_coding	C2H2-type zinc finger family protein	Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway. The mRNA is cell-to-cell mobile.	C2H2-type zinc finger family protein;(source:Araport11)
AT5G59900.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G59990.1	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT5G59830.1	protein_coding			DNA-binding protein;(source:Araport11)
AT5G59910.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT5G60000.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G59840.1	protein_coding	Ras-related small GTP-binding family protein		Ras-related small GTP-binding family protein;(source:Araport11)
AT5G59920.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein	Isolated in a screen for UV-B insensitive mutants using a hypocotyl growth inhibition assay. Mutants are defective in a number of UV-B responses.	Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G60010.1	protein_coding	ferric reductase-like transmembrane component family protein		ferric reductase-like transmembrane component family protein;(source:Araport11)
AT5G59850.1	protein_coding	Ribosomal protein S8 family protein		Ribosomal protein S8 family protein;(source:Araport11)
AT5G59930.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G60020.1	protein_coding	laccase 17	LAC17 appears to have laccase activity based on enzyme assays performed using lac17 mutants. Notably, these mutants appear to have a reduced deposition of G lignin units. LAC17 is expressed in interfascicular fibers and likely contributes to lignin biosynthesis, and hence, cell wall biosynthesis, there.	laccase 17;(source:Araport11)
AT5G59860.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G59940.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G59870.1	protein_coding	histone H2A 6	Encodes HTA6, a histone H2A protein.	histone H2A 6;(source:Araport11)
AT5G59950.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G59960.1	protein_coding			K-stimulated pyrophosphate-energized sodium pump protein;(source:Araport11)
AT5G65380.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT5G65390.1	protein_coding	arabinogalactan protein 7		arabinogalactan protein 7;(source:Araport11)
AT5G65310.1	protein_coding	homeobox protein 5	Encodes a class I HDZip (homeodomain-leucine zipper) protein that is a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment.	homeobox protein 5;(source:Araport11)
AT5G65400.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G65320.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G65410.1	protein_coding	homeobox protein 25	Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.Gain of function of ATHB25 (35S and UBQ10 proomoters) and double loss of function of ATHB25 and ATHB22 increases and decreases, respectively, seed longevity. This phenotype is maternal and related to seed coat alterations. Gain of function increases expression of GA3OX2 and GA4 and GA1 levels.	homeobox protein 25;(source:Araport11)
AT5G65330.1	protein_coding	AGAMOUS-like 78		AGAMOUS-like 78;(source:Araport11)
AT5G65420.1	protein_coding	CYCLIN D4;1	Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.	CYCLIN D4;(source:Araport11)
AT5G65340.1	protein_coding	Protein of unknown function, DUF617		MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT5G65430.1	protein_coding	general regulatory factor 8	member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1	general regulatory factor 8;(source:Araport11)
AT5G65350.1	protein_coding	histone 3 11		histone 3 11;(source:Araport11)
AT5G65440.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G65360.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT5G65450.1	protein_coding	ubiquitin-specific protease 17	Encodes a ubiquitin-specific protease. The mRNA is cell-to-cell mobile.	ubiquitin-specific protease 17;(source:Araport11)
AT5G65370.1	protein_coding	ENTH/ANTH/VHS superfamily protein		ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT5G65460.1	protein_coding	kinesin like protein for actin based chloroplast movement 2	Kinesin that binds cyclin-dependent kinase CDKA;1 as homodimer or as heterodimer with KCA1	kinesin like protein for actin based chloroplast movement 2;(source:Araport11)
AT5G65470.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT5G53050.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G53060.1	protein_coding	RNA-binding KH domain-containing protein	Encodes a KH domain-containing putative RNA-binding protein RCF3.  Functions as a upstream regulator for heat stress-responsive gene expression and thermotolerance and mediation of jasmonate signalling.Also shown to interact with HYL1 and is a component of the nuclear dicing body and to function in primary miRNA processing.	RNA-binding KH domain-containing protein;(source:Araport11)
AT5G53070.1	protein_coding	Ribosomal protein L9/RNase H1		Ribosomal protein L9/RNase H1;(source:Araport11)
AT5G53080.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	WTG1 is a chloroplast localized TPR protein required for chloroplast biogenesis. Mutants are delayed in greening and defective in splicing petL and ndhG. WTG1 does not itself bind RNA but it does bind  known editing factors MORF8 and MORF9.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G53000.1	protein_coding	2A phosphatase associated protein of 46 kD	PP2A-associated protein with a possible function in the chilling response	2A phosphatase associated protein of 46 kD;(source:Araport11)
AT5G53010.1	protein_coding	calcium-transporting ATPase, putative		calcium-transporting ATPase;(source:Araport11)
AT5G53020.1	protein_coding	Ribonuclease P protein subunit P38-related		Ribonuclease P protein subunit P38-like protein;(source:Araport11)
AT5G53030.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G53040.1	protein_coding	RWP-RK domain-containing protein	Encodes GROUNDED (GRD), a putative RWP-RK-type transcription factor broadly expressed in early development.  GRD promotes zygote elongation and basal cell fates.	RWP-RK domain-containing protein;(source:Araport11)
AT5G59210.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT5G59130.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT5G59220.1	protein_coding	highly ABA-induced PP2C gene 1	Encodes a member of the PP2C family (Clade A protein phosphatases type 2C). Functions as a negative regulator of osmotic stress and ABA signaling.	PP2C protein (Clade A protein phosphatases type 2C);(source:Araport11)
AT5G59140.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT5G59310.1	protein_coding	lipid transfer protein 4	Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	lipid transfer protein 4;(source:Araport11)
AT5G59230.1	protein_coding	transcription factor-related		transcription factor-like protein;(source:Araport11)
AT5G59150.1	protein_coding	RAB GTPase homolog A2D		RAB GTPase homolog A2D;(source:Araport11)
AT5G59320.1	protein_coding	lipid transfer protein 3	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. The mRNA is cell-to-cell mobile.	lipid transfer protein 3;(source:Araport11)
AT5G59240.1	protein_coding	Ribosomal protein S8e family protein		Ribosomal protein S8e family protein;(source:Araport11)
AT5G59160.1	protein_coding	type one serine/threonine protein phosphatase 2	Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.	type one serine/threonine protein phosphatase 2;(source:Araport11)
AT5G59330.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G59250.1	protein_coding	Major facilitator superfamily protein	Encodes a chloroplast localized H+/glucose antiporter.	Major facilitator superfamily protein;(source:Araport11)
AT5G59170.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT5G59340.1	protein_coding	WUSCHEL related homeobox 2	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. WOX2 has a putative Zinc finger domain downstream of the homeodomain. Transcripts are expressed in the egg cell, the zygote and the apical cell lineage and are reduced in met3-1 early embryos.  This gene is necessary for cell divisions that form the apical embryo domain.	WUSCHEL related homeobox 2;(source:Araport11)
AT5G59260.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G59180.1	protein_coding	DNA-directed RNA polymerase II	Non-catalytic subunit specific to DNA-directed RNA polymerase II; the ortholog of budding yeast RPB7	DNA-directed RNA polymerase II;(source:Araport11)
AT5G59270.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G59190.1	protein_coding	subtilase family protein		subtilase family protein;(source:Araport11)
AT5G59280.1	protein_coding	pumilio 16	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 16;(source:Araport11)
AT5G59200.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a chloroplast RNA editing factor.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G59290.1	protein_coding	UDP-glucuronic acid decarboxylase 3	Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate  several cell wall biosynthetic enzymes.	UDP-glucuronic acid decarboxylase 3;(source:Araport11)
AT5G59300.1	protein_coding	ubiquitin carrier protein 7	ubiquitin conjugating enzyme E2	ubiquitin-conjugating enzyme E2;(source:Araport11)
AT5G53570.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT5G53490.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	thylakoid lumenal 17.4 kDa protein, chloroplast, identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}. Putative pentapeptide protein.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G53580.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT5G53500.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G53590.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G53510.1	protein_coding	oligopeptide transporter 9	oligopeptide transporter	oligopeptide transporter 9;(source:Araport11)
AT5G53600.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT5G53520.1	protein_coding	oligopeptide transporter 8	Encodes an oligopeptide transporter. Target promoter of the male germline-specific transcription factor DUO1.	oligopeptide transporter 8;(source:Araport11)
AT5G53610.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT5G53530.1	protein_coding	vacuolar protein sorting 26A	Homolog of yeast retromer subunit VPS26.  Part of a retromer-like protein complex involved in endosome to lysosome protein transport.	vacuolar protein sorting 26A;(source:Araport11)
AT5G53620.1	protein_coding			RNA polymerase II degradation factor;(source:Araport11)
AT5G53540.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a P-loop NTPase APP1.  The disruption of APP1 is accompanied by a reduction in ROS level, a rise in the rate of cell division in the quiescent center (QC) and the promotion of root distal stem cell (DSC) differentiation.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G53550.1	protein_coding	YELLOW STRIPE like 3		YELLOW STRIPE like 3;(source:Araport11)
AT5G53640.1	protein_coding			F-box/FBD/LRR protein;(source:Araport11)
AT5G53560.1	protein_coding	cytochrome B5 isoform E	Encodes a cytochrome b5 isoform that can be reduced by AtCBR, a cytochrome b5 reductase.	cytochrome B5 isoform E;(source:Araport11)
AT5G53650.1	protein_coding			ABC transporter A family protein;(source:Araport11)
AT5G53660.1	protein_coding	growth-regulating factor 7	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	growth-regulating factor 7;(source:Araport11)
AT5G40580.1	protein_coding	20S proteasome beta subunit PBB2	Encodes 20S proteasome beta subunit PBB2 (PBB2).	20S proteasome beta subunit PBB2;(source:Araport11)
AT5G40590.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G40680.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G40600.1	protein_coding			bromodomain testis-specific protein;(source:Araport11)
AT5G40690.1	protein_coding			histone-lysine N-methyltransferase trithorax-like protein;(source:Araport11)
AT5G40610.1	protein_coding	NAD-dependent glycerol-3-phosphate dehydrogenase family protein		NAD-dependent glycerol-3-phosphate dehydrogenase family protein;(source:Araport11)
AT5G40530.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G40700.1	protein_coding			transcriptional regulator ATRX-like protein;(source:Araport11)
AT5G40620.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G40540.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G40710.1	protein_coding	zinc finger (C2H2 type) family protein		zinc finger (C2H2 type) family protein;(source:Araport11)
AT5G40630.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G40550.1	protein_coding	SGF29 tudor-like domain		SGF29 tudor-like domain-containing protein;(source:Araport11)
AT5G40720.1	protein_coding	Domain of unknown function (DUF23)		C3H4 type zinc finger protein (DUF23);(source:Araport11)
AT5G40640.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G40560.1	protein_coding	DegP protease 13	Encodes a putative DegP protease.	protease Do-like protein;(source:Araport11)
AT5G40730.1	protein_coding	arabinogalactan protein 24	Encodes an arabinogalactan-protein (AGP24).	arabinogalactan protein 24;(source:Araport11)
AT5G40650.1	protein_coding	succinate dehydrogenase 2-2	One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion.  Expressed during germination and post-germinative growth.	succinate dehydrogenase 2-2;(source:Araport11)
AT5G40570.1	protein_coding	Surfeit locus protein 2 (SURF2)		Surfeit locus protein 2 (SURF2);(source:Araport11)
AT5G40740.1	protein_coding		Encodes a conserved AUGMIN subunit 6 (AUG6)  which is known to be involved in microtuble nucleation. Mutants affect both male and female gametogenesis.	HAUS augmin-like complex subunit;(source:Araport11)
AT5G40660.1	protein_coding	ATP12 protein-related		ATP12 protein-like protein;(source:Araport11)
AT5G40750.1	protein_coding	FBD / Leucine Rich Repeat domains containing protein		FBD / Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G40670.1	protein_coding	PQ-loop repeat family protein / transmembrane family protein		PQ-loop repeat family protein / transmembrane family protein;(source:Araport11)
AT5G49650.1	protein_coding	xylulose kinase-2	Encodes a cytosolic protein capable of phosphorylating xylulose and deoxy-xylulose. It most likely plays a role in producing precursors for isoprenoid biosynthesis.	xylulose kinase-2;(source:Araport11)
AT5G49660.1	protein_coding	Leucine-rich repeat transmembrane protein kinase family protein	The gene encodes receptorlike kinase (RLK). Involved in the maintenance organization of cell files or cell morphology in conductive  elements. Functions as a receptor for CEP1 peptide. Mediates nitrate uptake signaling.	Leucine-rich repeat transmembrane protein kinase family protein;(source:Araport11)
AT5G47530.1	protein_coding	Auxin-responsive family protein		Auxin-responsive family protein;(source:Araport11)
AT5G47540.1	protein_coding	Mo25 family protein		Mo25 family protein;(source:Araport11)
AT5G47460.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G47630.1	protein_coding	mitochondrial acyl carrier protein 3	Encodes a member of the mitochondrial acyl carrier protein (ACP) family.  Its role is currently obscure as it is weakly expressed and has not yet been identified by mitochondrial proteome analysis.	mitochondrial acyl carrier protein 3;(source:Araport11)
AT5G47550.1	protein_coding	Cystatin/monellin superfamily protein	Putative phytocystatin expressed in seedlings and induced by heat stress and abscisic acid. Overexpression increases germination rate and heat stress tolerance. CYS5 is a target of ABF1 and ABF3 transcriptional regulators which bind to its promoter.	Cystatin/monellin superfamily protein;(source:Araport11)
AT5G47470.1	protein_coding	Nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	Nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G47640.1	protein_coding	nuclear factor Y, subunit B2	Involved in the regulation of response to nutrient levels.	nuclear factor Y, subunit B2;(source:Araport11)
AT5G47560.1	protein_coding	tonoplast dicarboxylate transporter	Encodes a tonoplast malate/fumarate transporter.	tonoplast dicarboxylate transporter;(source:Araport11)
AT5G47650.1	protein_coding	nudix hydrolase homolog 2	Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress.	nudix hydrolase homolog 2;(source:Araport11)
AT5G47480.1	protein_coding	RGPR-related		RGPR-like protein;(source:Araport11)
AT5G47570.1	protein_coding			NADH dehydrogenase ubiquinone 1 beta subcomplex subunit;(source:Araport11)
AT5G47490.1	protein_coding	RGPR-related		RGPR-like protein;(source:Araport11)
AT5G47660.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT5G47580.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G47500.1	protein_coding	Pectin lyase-like superfamily protein	predicted to encode a pectin methylesterase	Pectin lyase-like superfamily protein;(source:Araport11)
AT5G47670.1	protein_coding	nuclear factor Y, subunit B6	Encodes LEC1-Like (L1L), closely related to LEC1 (Leafy Cotyledon1).  Functions as a regulator of embryo development.	nuclear factor Y, subunit B6;(source:Araport11)
AT5G47590.1	protein_coding	Heat shock protein HSP20/alpha crystallin family		Heat shock protein HSP20/alpha crystallin family;(source:Araport11)
AT5G47510.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G47680.1	protein_coding		Encodes a protein involved in modification of nucleosides in tRNA. Mutants have 50% less 1-methylguanosine than wt counterparts.	tRNA (guanine(9)-N1)-methyltransferase-like protein;(source:Araport11)
AT5G47600.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT5G47520.1	protein_coding	RAB GTPase homolog A5A		RAB GTPase homolog A5A;(source:Araport11)
AT5G47610.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G47620.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G37310.1	protein_coding	Endomembrane protein 70 protein family		Endomembrane protein 70 protein family;(source:Araport11)
AT5G37320.1	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT5G37240.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G37330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G37250.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G37340.1	protein_coding	ZPR1 zinc-finger domain protein		ZPR1 zinc-finger domain protein;(source:Araport11)
AT5G37260.1	protein_coding	Homeodomain-like superfamily protein	Encodes a MYB family transcription factor Circadian 1 (CIR1).  Involved in circadian regulation in Arabidopsis.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G37350.1	protein_coding	Serine/threonine-protein kinase Rio1		Serine/threonine-protein kinase Rio1;(source:Araport11)
AT5G37270.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G37360.1	protein_coding			LOW protein: ammonium transporter 1-like protein;(source:Araport11)
AT5G37280.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G37370.1	protein_coding	PRP38 family protein	encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	PRP38 family protein;(source:Araport11)
AT5G37290.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G37380.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G37300.1	protein_coding	O-acyltransferase (WSD1-like) family protein	Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis.	O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT5G43250.1	protein_coding	nuclear factor Y, subunit C13		nuclear factor Y, subunit C13;(source:Araport11)
AT5G43260.1	protein_coding	chaperone protein dnaJ-related		chaperone protein dnaJ-like protein;(source:Araport11)
AT5G43270.1	protein_coding	squamosa promoter binding protein-like 2	member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors.    In conjunction with SPL10 and SPL11, SPL2 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.	squamosa promoter binding protein-like 2;(source:Araport11)
AT5G43280.1	protein_coding	delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1	Encodes the peroxisomal delta 3,5-delta2,4-dienoyl-CoA isomerase, a enzyme involved in degradation of unsaturated fatty acids. Gene expression is induced upon seed germination.	delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1;(source:Araport11)
AT5G43290.1	protein_coding	WRKY DNA-binding protein 49	member of WRKY Transcription Factor; Group II-c	WRKY DNA-binding protein 49;(source:Araport11)
AT5G43300.1	protein_coding	PLC-like phosphodiesterases superfamily protein	Encodes a member of the glycerophosphodiester phosphodiesterase (GDPD) family.	PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT5G43310.1	protein_coding	COP1-interacting protein-related		COP1-interacting protein-like protein;(source:Araport11)
AT5G43230.1	protein_coding			EEIG1/EHBP1 protein amino-terminal domain protein;(source:Araport11)
AT5G43240.1	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT5G07010.1	protein_coding	sulfotransferase 2A	Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor).	sulfotransferase 2A;(source:Araport11)
AT5G06930.1	protein_coding			nucleolar-like protein;(source:Araport11)
AT5G07020.1	protein_coding	proline-rich family protein	Encodes an integral thylakoid membrane protein that interacts with PSII core complexes and contributes to the maintenance of PSII homeostasis upon exposure to photoinhibitory light conditions by participating in the protection and stabilization of PSII under photoinhibitory stress.	proline-rich family protein;(source:Araport11)
AT5G07030.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G06940.1	protein_coding	Leucine-rich repeat receptor-like protein kinase family protein		Leucine-rich repeat receptor-like protein kinase family protein;(source:Araport11)
AT5G06860.1	protein_coding	polygalacturonase inhibiting protein 1	Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection. Suppressed in the proton sensitive stop1-mutant, but the transcription level was recovered by transformation of STOP2. Knockout mutant showed severe damage in the root tip in low Ca and low pH medium.	polygalacturonase inhibiting protein 1;(source:Araport11)
AT5G06950.1	protein_coding	bZIP transcription factor family protein	Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment.	bZIP transcription factor family protein;(source:Araport11)
AT5G07040.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G06870.1	protein_coding	polygalacturonase inhibiting protein 2	Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate.Suppressed in the proton sensitive stop1-mutant, but the transcription level was recovered by transformation of STOP2. Knockout mutant showed severe damage in the root tip in low Ca and low pH medium.	polygalacturonase inhibiting protein 2;(source:Araport11)
AT5G06960.1	protein_coding	OCS-element binding factor 5	Encodes a basic leucine zipper (B-ZIP) containing protein that interacts with NPR1 to promote expression of salicylic acid induced genes. Binds the ocs-element.	OCS-element binding factor 5;(source:Araport11)
AT5G07050.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G06890.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G06970.1	protein_coding	Protein of unknown function (DUF810)	PATROL1 is a Munc13-like protein involved in mediating H[+]-ATPase translocation. It interacts with AHA1and is responsible for its translocation during stomatal movement.	plant/protein (DUF810);(source:Araport11)
AT5G07060.1	protein_coding	CCCH-type zinc fingerfamily protein with RNA-binding domain	Encodes MAC5C, homologous to MAC5A. MAC5A is a component of the MOS4-associated complex (MAC) that contributes to snc1- mediated autoimmunity. Homologues include AT1G07360 (MAC5A), AT2G29580 (MAC5B) and AT5G07060 (MAC5C). MAC5A and MAC5B are more closely related to each other than to MAC5C.	CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT5G06900.1	protein_coding	cytochrome P450, family 93, subfamily D, polypeptide 1	member of CYP93D	cytochrome P450, family 93, subfamily D, polypeptide 1;(source:Araport11)
AT5G06980.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G06910.1	protein_coding	J-domain protein 6	DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain.	J-domain protein 6;(source:Araport11)
AT5G06990.1	protein_coding	Protein of unknown function, DUF617		MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT5G06920.1	protein_coding	FASCICLIN-like arabinogalactan protein 21 precursor	Fasciclin-like arabinogalactan protein. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan protein 21 precursor;(source:Araport11)
AT5G07000.1	protein_coding	sulfotransferase 2B	Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates.	sulfotransferase 2B;(source:Araport11)
AT5G35520.1	protein_coding	minichromosome instability 12 (mis12)-like	encodes a homologue of the yeast (S. pombe) Mis12 (minichromosome instability) protein. MIS12 co-localizes with 180 bp repeats of centromeric DNA throughout the cell cycle with a similar pattern to AtCENH3/HTR12. Neither of these two proteins completely cover the 180 bp regions based on FISH analysis.	minichromosome instability 12 (mis12)-like protein;(source:Araport11)
AT5G35530.1	protein_coding	Ribosomal protein S3 family protein		Ribosomal protein S3 family protein;(source:Araport11)
AT5G35540.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G35460.1	protein_coding			membrane protein;(source:Araport11)
AT5G35550.1	protein_coding	Duplicated homeodomain-like superfamily protein	TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT5G35560.1	protein_coding	DENN (AEX-3) domain-containing protein		DENN (AEX-3) domain-containing protein;(source:Araport11)
AT5G35480.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G35490.1	protein_coding	mto 1 responding up 1	Encodes MRU1 (mto 1 responding up).  Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. A maternally expressed imprinted gene.	mto 1 responding up 1;(source:Araport11)
AT5G35510.1	protein_coding			TIR-NBS-LRR class disease resistance protein;(source:Araport11)
AT5G05560.1	protein_coding	E3 ubiquitin ligase, putative	Encodes a subunit of the Arabidopsis thaliana E3 ubiquitin ligase complex that plays a synergistic role with APC4 both in female gametogenesis and in embryogenesis.	E3 ubiquitin ligase;(source:Araport11)
AT5G05570.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G05580.1	protein_coding	fatty acid desaturase 8	Encodes a temperature sensitive plastidic fatty acid desaturase.	fatty acid desaturase 8;(source:Araport11)
AT5G05590.1	protein_coding	phosphoribosylanthranilate isomerase 2	Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in the tryptophan biosynthetic pathway.	phosphoribosylanthranilate isomerase 2;(source:Araport11)
AT5G05510.1	protein_coding	Mad3/BUB1 homology region 1		Mad3/BUB1 homology region 1;(source:Araport11)
AT5G05600.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Encodes a protein with similarity to flavonol synthases that is involved in the detoxifcation polycyclic aromatic hydrocarbons.One of 4 paralogs encoding a 2-oxoglutarate/Fe(II)-dependent oxygenases  that hydroxylates JA to 12-OH-JA.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G05520.1	protein_coding	Outer membrane OMP85 family protein		Outer membrane OMP85 family protein;(source:Araport11)
AT5G05610.1	protein_coding	alfin-like 1	Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 1;(source:Araport11)
AT5G05530.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G05540.1	protein_coding	small RNA degrading nuclease 2		small RNA degrading nuclease 2;(source:Araport11)
AT5G05550.1	protein_coding	sequence-specific DNA binding transcription factors	Encodes trihelix-domain transcription factor VFP5. Interacts with agrobacterium virulence protein VirF.	sequence-specific DNA binding transcription factor;(source:Araport11)
AT5G24300.1	protein_coding	Glycogen/starch synthases, ADP-glucose type	SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch.	Glycogen/starch synthases, ADP-glucose type;(source:Araport11)
AT5G24220.1	protein_coding	Lipase class 3-related protein		Lipase class 3-related protein;(source:Araport11)
AT5G24310.1	protein_coding	ABL interactor-like protein 3	One of four ABI-like proteins.	ABL interactor-like protein 3;(source:Araport11)
AT5G24230.1	protein_coding	Lipase class 3-related protein		Lipase class 3-related protein;(source:Araport11)
AT5G24320.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G24240.1	protein_coding	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein	Encodes PI4Kc3, localizes to the nucleus and has autophosphorylation activity, but no lipid kinase activity. Overexpression mutants display late-flowering phenotype.	phosphatidylinositol 4-kinase gamma-like protein;(source:Araport11)
AT5G24330.1	protein_coding	ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6	Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication.  Contains a PCNA-binding domain.  ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.	TRITHORAX-RELATED PROTEIN 6;(source:Araport11)
AT5G24260.1	protein_coding	prolyl oligopeptidase family protein		prolyl oligopeptidase family protein;(source:Araport11)
AT5G24270.1	protein_coding	Calcium-binding EF-hand family protein	encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B.  Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.	Calcium-binding EF-hand family protein;(source:Araport11)
AT5G24280.1	protein_coding	gamma-irradiation and mitomycin c induced 1	Encodes GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein.  Involved in somatic homologous recombination.	gamma-irradiation and mitomycin c induced 1;(source:Araport11)
AT5G24290.1	protein_coding	Vacuolar iron transporter (VIT) family protein		Vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT5G37480.1	protein_coding			maltase-glucoamylase, intestinal protein;(source:Araport11)
AT5G37490.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G37500.1	protein_coding	gated outwardly-rectifying K+ channel	Encodes a guard cell outward potassium channel.  Belongs to the Shaker family K+ channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500). Mutants have increased water consumption and limited stomatal closure in response to abscisic and jasmonic acids. It forms a heteromeric K(out) channels with SKOR. The gene is expressed ubiquitously in root and the vasculature and guard cells of leaves. Expression is suppressed during agrobacterium-induced tumor formation and increased in response to water deprivation and cold.	gated outwardly-rectifying K+ channel;(source:Araport11)
AT5G37510.1	protein_coding	NADH-ubiquinone dehydrogenase, mitochondrial, putative	Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I).  The protein has been isolated in the male gametophyte. The mRNA is cell-to-cell mobile.	NADH-ubiquinone dehydrogenase;(source:Araport11)
AT5G37520.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT5G37530.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G37540.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G37550.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G65760.1	protein_coding	Serine carboxypeptidase S28 family protein		Serine carboxypeptidase S28 family protein;(source:Araport11)
AT5G65770.1	protein_coding	little nuclei4	Encodes a protein that localizes to the nuclear periphery and affects nuclear morphology. Member of a small gene family in Arabidopsis containing 4 proteins (LNC1-4 or CRWN 1-4) with redundant functions in protection from oxidative damage, control of nuclear morphology and degradation of ABI5.	little nuclei4;(source:Araport11)
AT5G65780.1	protein_coding	branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)	Encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant. Note that the AT5G65780.2 gene model (TAIR10) has been obsoleted due to the lack of experimental support. The mRNA is cell-to-cell mobile.	branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);(source:Araport11)
AT5G65700.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. The mRNA is cell-to-cell mobile.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT5G65790.1	protein_coding	myb domain protein 68	Encodes a MYB family protein with N-terminal R2R3 DNA-binding domains involved in root development.	myb domain protein 68;(source:Araport11)
AT5G65710.1	protein_coding	HAESA-like 2	Encodes a protein controlling the separation step of floral organ abscission.Necessary for pathogen-triggered leaf abscission.	HAESA-like 2;(source:Araport11)
AT5G65800.1	protein_coding	ACC synthase 5	1-aminocyclopropane-1-carboxylate synthase (ACS) is encoded by a multigene family consisting of at least five members whose expression is induced by hormones, developmental signals, and protein synthesis inhibition.	ACC synthase 5;(source:Araport11)
AT5G65720.1	protein_coding	nitrogen fixation S (NIFS)-like 1	Encodes a cysteine desulfurase whose activity is dependent on AtSufE activation. It requires pyridoxal phosphate (PLP) for proper folding.  Its catalytic efficiency is increase three-fold in the presence of AtFH (frataxin).	nitrogen fixation S (NIFS)-like 1;(source:Araport11)
AT5G65730.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 6		xyloglucan endotransglucosylase/hydrolase 6;(source:Araport11)
AT5G65740.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT5G65750.1	protein_coding	2-oxoglutarate dehydrogenase, E1 component		2-oxoglutarate dehydrogenase, E1 component;(source:Araport11)
AT5G50100.1	protein_coding	Putative thiol-disulphide oxidoreductase DCC	Encodes a putative thioredoxin DCC1 involved in determining shoot regeneration capacity. It interacts directly with CARBONIC ANHYDRASE 2 (CA2), an essential subunit of respiratory chain NADH dehydrogenase complex (Complex I) and regulates Complex I activity via redox modification of CA2.	Putative thiol-disulfide oxidoreductase DCC;(source:Araport11)
AT5G50020.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT5G50110.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G50030.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G50120.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G50040.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G50130.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G50050.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G50140.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G50060.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G50150.1	protein_coding	Protein of Unknown Function (DUF239)	LOTR1 protein has an unknown function. It contains  both DUF4409 and DUF239 domains. Loss of function mutations show defects in formation of the Casparian band- which is correlated with mis localization of CASP1.	NEP-interacting protein, putative (DUF239);(source:Araport11)
AT5G50070.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G50080.1	protein_coding	ethylene response  factor 110	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain and is phosphorylated in planta. There are 7 members in this subfamily.	ethylene response factor 110;(source:Araport11)
AT5G50090.1	protein_coding			D-ribose-binding periplasmic protein;(source:Araport11)
AT5G06770.1	protein_coding	KH domain-containing protein / zinc finger (CCCH type) family protein	KHZ2  is a CCCH zinc-finger and KH domain protein belonging to the VII subfamily. It is expressed throughout the plant. Highly similar to KHZ1.Double mutants with khz1 are  late flowering. Overexpression leads to increased rates of leaf senescence.	KH domain-containing protein / zinc finger (CCCH type) family protein;(source:Araport11)
AT5G06690.1	protein_coding	WCRKC thioredoxin 1	Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma.  Contains a WCRKC motif. Functions in redox cascade with 2CPA and 2CPB via the ferredoxin-thioredoxin reductase (FTR)/thioredoxin (Trx) pathway to mediate the light-responsive reductive control of target proteins. Oxidizes redox-regulated proteins.	WCRKC thioredoxin 1;(source:Araport11)
AT5G06780.1	protein_coding	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein		Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein;(source:Araport11)
AT5G06700.1	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). A tbr mutant is impaired in its ability to deposit secondary wall cellulose in specific cell types, most notably in trichomes.	trichome birefringence-like protein (DUF828);(source:Araport11)
AT5G06790.1	protein_coding			cotton fiber protein;(source:Araport11)
AT5G06710.1	protein_coding	homeobox from Arabidopsis thaliana	Homeobox-leucine zipper protein.	homeobox leucine zipper protein;(source:Araport11)
AT5G06800.1	protein_coding	myb-like HTH transcriptional regulator family protein		myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT5G06720.1	protein_coding	peroxidase 2	Encodes a peroxidase with diverse roles in the wound response, flower development, and syncytium formation.	peroxidase 2;(source:Araport11)
AT5G06810.1	protein_coding	Mitochondrial transcription termination factor family protein		transcription termination factor family protein;(source:Araport11)
AT5G06730.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G06820.1	protein_coding	STRUBBELIG-receptor family 2		STRUBBELIG-receptor family 2;(source:Araport11)
AT5G06740.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G06830.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G06750.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT5G06760.1	protein_coding	Late Embryogenesis Abundant 4-5	Encodes LEA4-5, a member of the Late Embryogenesis Abundant (LEA) proteins which typically accumulate in response to low water availability conditions imposed during development or by the environment. Most of the diverse set of LEA proteins can be grouped according to properties such as high hydrophilicity and high content of glycine or other small amino acids in what  has been termed hydrophilins.  LEA4-5 protects enzyme activities from the adverse effects induced by freeze-thaw cycles in vitro.	Late Embryogenesis Abundant 4-5;(source:Araport11)
AT5G56870.1	protein_coding	beta-galactosidase 4		beta-galactosidase 4;(source:Araport11)
AT5G56880.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G17910.1	protein_coding			cardiomyopathy-associated protein;(source:Araport11)
AT5G17920.1	protein_coding	Cobalamin-independent synthase family protein	Encodes a cytosolic cobalamin-independent methionine synthase, involved in methionine regeneration via the activated methyl cycle (SAM cycle). The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. The mRNA is cell-to-cell mobile.	Cobalamin-independent synthase family protein;(source:Araport11)
AT5G17880.1	protein_coding	disease resistance protein (TIR-NBS-LRR class)	Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development.  csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal).  csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae.	disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G17890.1	protein_coding	DA1-related protein 4	Encodes a protein that appears to be involved in defense responses. Contains TIR, NB-LRR and LIM domains. A gain of function allele exhibits cold dependent phenotypes including apparent activation of defense responses and an increased freezing tolerance. The mRNA is cell-to-cell mobile.	DA1-related protein 4;(source:Araport11)
AT5G17900.1	protein_coding	microfibrillar-associated protein-related		microfibrillar-associated protein-like protein;(source:Araport11)
AT5G41500.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G46350.1	protein_coding	WRKY DNA-binding protein 8	member of WRKY Transcription Factor; Group II-c	WRKY DNA-binding protein 8;(source:Araport11)
AT5G46270.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G46360.1	protein_coding	Ca2+ activated outward rectifying K+ channel 3	Encodes AtKCO3, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins.  AtKCO3 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo.	Ca2+ activated outward rectifying K+ channel 3;(source:Araport11)
AT5G46280.1	protein_coding	Minichromosome maintenance (MCM2/3/5) family protein		Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT5G46370.1	protein_coding	Ca2+ activated outward rectifying K+ channel 2	Encodes AtTPK2 (KCO2), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK2 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.	Ca2+ activated outward rectifying K+ channel 2;(source:Araport11)
AT5G46290.1	protein_coding	3-ketoacyl-acyl carrier protein synthase I	Encodes beta-ketoacyl-[acyl carrier protein] synthase I (KASI).  Crucial for fatty acid synthesis.  Plays a role in chloroplast division and embryo development.	3-ketoacyl-acyl carrier protein synthase I;(source:Araport11)
AT5G46380.1	protein_coding	Kinase-related protein of unknown function (DUF1296)		Serine/Threonine-kinase, putative (DUF1296);(source:Araport11)
AT5G46300.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G46390.1	protein_coding	Peptidase S41 family protein		Peptidase S41 family protein;(source:Araport11)
AT5G46310.1	protein_coding	WRKY family transcription factor		WRKY family transcription factor;(source:Araport11)
AT5G46400.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G46410.1	protein_coding	SCP1-like small phosphatase 4	Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4). The mRNA is cell-to-cell mobile.	SCP1-like small phosphatase 4;(source:Araport11)
AT5G46320.1	protein_coding	MADS-box family protein		MADS-box family protein;(source:Araport11)
AT5G46250.1	protein_coding	RNA-binding protein		RNA-binding protein;(source:Araport11)
AT5G46330.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response.  FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB. The mRNA is cell-to-cell mobile.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT5G46260.1	protein_coding	disease resistance protein (TIR-NBS-LRR class) family		disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G46340.1	protein_coding	O-acetyltransferase family protein	Encodes a homolog of the protein Cas1p known to be involved in polysaccharide O-acetylation in Cryptococcus neoformans. Has high similarity to RWA2 whose mutant displays reduced acetylation.  The protein is expressed in the Golgi and is involved in the acetylation of xylan during secondary wall biosynthesis.	O-acetyltransferase family protein;(source:Araport11)
AT5G40390.1	protein_coding	Raffinose synthase family protein	Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount of verbascose (as well as mannitol) whereas the levels of raffinose and stachyose remained unchanged.	Raffinose synthase family protein;(source:Araport11)
AT5G40400.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G40320.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G40410.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G40330.1	protein_coding	myb domain protein 23	Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation.  It is a member of subgroup 15, together with WER and GL1.  Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end.  The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1.  The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.	myb domain protein 23;(source:Araport11)
AT5G40420.1	protein_coding	oleosin 2	Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination.  Functions in freezing tolerance of seeds.	oleosin 2;(source:Araport11)
AT5G40340.1	protein_coding	Tudor/PWWP/MBT superfamily protein	PWWP domain protein involved in regulation of FLC and flowering time.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT5G40430.1	protein_coding	myb domain protein 22	Encodes a putative transcription factor (MYB22).	myb domain protein 22;(source:Araport11)
AT5G40350.1	protein_coding	myb domain protein 24	Myb24 transcription factor. Member of the R2R3 factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development. MYB24 interacts with JAZ proteins, and functions redundantly with MYB21 and MYB57 to regulate stamen development. Possible positive regulator of CKL2 and 7 expression under high temperature.	myb domain protein 24;(source:Araport11)
AT5G40440.1	protein_coding	mitogen-activated protein kinase kinase 3	Encodes a mitogen-activated protein kinase kinase.  Activates MPK8 and is a target of MPKKK20. Mutant root growth is sensitive oryzalin and suggestive of a role in signaling during microtubule organization.	mitogen-activated protein kinase kinase 3;(source:Araport11)
AT5G40360.1	protein_coding	myb domain protein 115	Encodes a member of the MYB family of transcription factors and in involved in regulation of glucosinolate (GLS) biosynthesis. MYB115 binds to the promoters of a number of GLS biosynthetic enzymes and mutations show differences in accumulation of GLS compared to wild type.	myb domain protein 115;(source:Araport11)
AT5G40450.1	protein_coding		Encodes a member of a plant gene family, APK_ORTHOMCL5144,of unknown function. RBB1 is localized to the cytosol and involved in vacuolar biogenesis and organization. RBB1 mutants have increased number of vacuolar bulbs and fewer trans-vacuolar strands.	A-kinase anchor-like protein;(source:Araport11)
AT5G40370.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT5G40380.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 42	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 42;(source:Araport11)
AT5G62800.1	protein_coding	Protein with RING/U-box and TRAF-like domains		Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT5G62730.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G62810.1	protein_coding	peroxin 14	mutant has a defect in the intracellular transport of thiolase from the cytosol to glyoxysomes (formerly known as ped2) The mRNA is cell-to-cell mobile.	peroxin 14;(source:Araport11)
AT5G62900.1	protein_coding			basic-leucine zipper transcription factor K;(source:Araport11)
AT5G62740.1	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT5G62820.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT5G62910.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G62750.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G62830.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G62920.1	protein_coding	response regulator 6	Encodes a Type-A response regulator that is responsive to cytokinin treatment.  Its C-ter domain is very short in comparison to other Arabidopsis ARRs (17 total). Arr6 protein is stabilized by cytokinin.	response regulator 6;(source:Araport11)
AT5G62760.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G62840.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT5G62930.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT5G62770.1	protein_coding	Protein of unknown function (DUF1645)		membrane-associated kinase regulator, putative (DUF1645);(source:Araport11)
AT5G62850.1	protein_coding	Nodulin MtN3 family protein	Encodes a protein that is expressed in vegetative cells of pollen. A member of the SWEET sucrose efflux transporter family proteins.	Nodulin MtN3 family protein;(source:Araport11)
AT5G62940.1	protein_coding	Dof-type zinc finger DNA-binding family protein	HCA2 induces the formation of interfascicular  cambium and regulates vascular tissue development in the aerial parts of the plant. Evidence from both gain of function and dominant negative alleles. PEAR protein involved in the formation of a short-range concentration gradient that peaks at protophloem sieve elements, and activates gene expression that promotes radial growth. Locally promotes transcription of inhibitory HD-ZIP III genes, and thereby establishes a negative-feedback loop that forms a robust boundary that demarks the zone of cell division.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT5G62780.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G62860.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G62950.1	protein_coding	RNA polymerase II, Rpb4, core protein		RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT5G62790.1	protein_coding	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. Arabidopsis  DXR is targeted to plastids and localizes into chloroplasts of leaf cells. DXR knockout or strongly silenced lines have a seedling lethal, albino phenotype. Transgenic, partially silenced lines expressing 35S:DXR have a variegated phenotype.	1-deoxy-D-xylulose 5-phosphate reductoisomerase;(source:Araport11)
AT5G62880.1	protein_coding	RAC-like 10	ROP (Rho of plant GTPases) family member involved in cell wall patterning. Locally activated to form plasma membrane domains, which direct formation of cell wall pits in metaxylem vessel cells through interaction with cortical microtubules. Pattern formation of cell wall pits is governed by ROP activation via a reaction-difusion mechanism. Patterning involves active ROP1 recruiting BDR1 to the plasma membrane in pit regions. BRD1 in turn recruits the actin binding protein WAL.	RAC-like 10;(source:Araport11)
AT5G62890.1	protein_coding	Xanthine/uracil permease family protein		Xanthine/uracil permease family protein;(source:Araport11)
AT5G43830.1	protein_coding	Aluminium induced protein with YGL and LRDR motifs		aluminum induced protein with YGL and LRDR motifs;(source:Araport11)
AT5G43750.1	protein_coding	NAD(P)H dehydrogenase 18		NAD(P)H dehydrogenase 18;(source:Araport11)
AT5G43840.1	protein_coding	heat shock transcription factor  A6A	member of Heat Stress Transcription Factor (Hsf) family	heat shock transcription factor A6A;(source:Araport11)
AT5G43760.1	protein_coding	3-ketoacyl-CoA synthase 20	Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). The mRNA is cell-to-cell mobile.	3-ketoacyl-CoA synthase 20;(source:Araport11)
AT5G43850.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G43770.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT5G43860.1	protein_coding	chlorophyllase 2	Encodes a chlorophyllase, the first enzyme in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to chlorophyllide and phytol. AtCLH2 has a typical signal sequence for the chloroplast. Gene expression does not respond to methyljasmonate, a known promoter of senescence and chlorophyll degradation.	chlorophyllase 2;(source:Araport11)
AT5G43780.1	protein_coding	Pseudouridine synthase/archaeosine transglycosylase-like family protein	sulfate adenylyltransferase, ATP sulfurylase	Pseudouridine synthase/archaeosine transglycosylase-like family protein;(source:Araport11)
AT5G43710.1	protein_coding	Glycosyl hydrolase family 47 protein		Glycosyl hydrolase family 47 protein;(source:Araport11)
AT5G43790.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G43720.1	protein_coding	Protein of unknown function (DUF2361)		rRNA-processing EFG1-like protein (DUF2361);(source:Araport11)
AT5G43800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT5G43730.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G43810.1	protein_coding	Stabilizer of iron transporter SufD / Polynucleotidyl transferase	Encodes Argonaute10, a member of the EIF2C (elongation initiation factor 2c)/  Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. AGO10 specifically sequesters miR166/165 to regulate shoot apical meristem development.	Stabilizer of iron transporter SufD / Polynucleotidyl transferase;(source:Araport11)
AT5G43740.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G43820.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G46970.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G46980.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G46910.1	protein_coding	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein	H3K27me3 demethylase involved in temperature and photoperiod dependent repressing of flowering.	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11)
AT5G46990.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G46920.1	protein_coding	Intron maturase, type II family protein		Intron maturase, type II family protein;(source:Araport11)
AT5G47000.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G46930.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G47010.1	protein_coding	RNA helicase, putative	Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb-  amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. The mRNA is cell-to-cell mobile.	RNA helicase;(source:Araport11)
AT5G46940.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G47020.1	protein_coding			MraZ;(source:Araport11)
AT5G47030.1	protein_coding	ATPase, F1 complex, delta/epsilon subunit	Encodes the mitochondrial ATP synthase subunit delta.	ATPase, F1 complex, delta/epsilon subunit;(source:Araport11)
AT5G46950.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein	One of of a pair of paralogous invertase with very high similarity.Expressed in female gametophyte and endosperm, particularly mycropylar endosperm. May function during embryogenesis to provide sugars to the developing embryo.	Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G46960.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein	Pectin methylesterase inhibitor that is involved in  resistance to Botrytis cinerea. Affects PME activity during infection to prevent disease. Closely related paralog of AT5G46950 (InvINH2).	Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G47040.1	protein_coding	lon protease 2	Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790).  Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells.  Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.	lon protease 2;(source:Araport11)
AT5G47050.1	protein_coding	SBP (S-ribonuclease binding protein) family protein		SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT5G47060.1	protein_coding	Protein of unknown function (DUF581)		hypothetical protein (DUF581);(source:Araport11)
AT5G22580.1	protein_coding	Stress responsive A/B Barrel Domain		Stress responsive A/B Barrel Domain-containing protein;(source:Araport11)
AT5G22500.1	protein_coding	fatty acid reductase 1	Encodes a member of the eight-member gene family encoding alcohol-forming fatty acyl-CoA reductases (FARs) identified in Arabidopsis thaliana.  Three of the FARs, FAR1 (At5g22500), FAR4 (At3g44540) and FAR5 (At3g44550), are shown to generate the fatty alcohols found in root, seed coat, and wound-induced leaf tissue.	fatty acid reductase 1;(source:Araport11)
AT5G22510.1	protein_coding	alkaline/neutral invertase	Encodes a chloroplast-targeted alkaline/neutral invertase that is implicated in the development of the photosynthetic apparatus and nitrogen assimilation in seedlings to control the sucrose to hexose ratio.	alkaline/neutral invertase;(source:Araport11)
AT5G22520.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G22530.1	protein_coding		Unknown protein, knockout shows increased sensitivity to Al stress.	hypothetical protein;(source:Araport11)
AT5G22540.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT5G22550.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT5G22480.1	protein_coding	ZPR1 zinc-finger domain protein		ZPR1 zinc-finger domain protein;(source:Araport11)
AT5G22560.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT5G22490.1	protein_coding	O-acyltransferase (WSD1-like) family protein		O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT5G22570.1	protein_coding	WRKY DNA-binding protein 38	member of WRKY Transcription Factor; Group III	WRKY DNA-binding protein 38;(source:Araport11)
AT5G58510.1	protein_coding			Rab3 GTPase-activating protein catalytic protein;(source:Araport11)
AT5G58520.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G58440.1	protein_coding	sorting nexin 2A		sorting nexin 2A;(source:Araport11)
AT5G58530.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT5G58450.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G58540.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G58460.1	protein_coding	cation/H+ exchanger 25	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 25;(source:Araport11)
AT5G58470.1	protein_coding	TBP-associated factor 15B		TBP-associated factor 15B;(source:Araport11)
AT5G58480.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G58490.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G58500.1	protein_coding	Protein of unknown function (DUF640)		LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
AT5G16290.1	protein_coding	VALINE-TOLERANT 1	Encodes a regulatory subunit of acetohydroxy acid synthase (AHAS), the &#64257;rst committed enzyme in the branched chain amino acid biosynthesis pathway.	VALINE-TOLERANT 1;(source:Araport11)
AT5G16380.1	protein_coding	Protein of unknown function, DUF538		autophagy-like protein, putative (Protein of unknown function, DUF538);(source:Araport11)
AT5G16300.1	protein_coding	Vps51/Vps67 family (components of vesicular transport) protein		Vps51/Vps67 family (components of vesicular transport) protein;(source:Araport11)
AT5G16390.1	protein_coding	chloroplastic acetylcoenzyme A carboxylase 1	Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex.	chloroplastic acetylcoenzyme A carboxylase 1;(source:Araport11)
AT5G16310.1	protein_coding	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1		Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1;(source:Araport11)
AT5G16480.1	protein_coding	Phosphotyrosine protein phosphatases superfamily protein	Encodes an atypical dual-speci&#64257;city phosphatase.	Phosphotyrosine protein phosphatases superfamily protein;(source:Araport11)
AT5G16400.1	protein_coding	thioredoxin F2	Encodes an f-type thioredoxin (Trx-f2) localized in chloroplast stroma.	thioredoxin F2;(source:Araport11)
AT5G16320.1	protein_coding	FRIGIDA like 1	family member of FRI-related genes that is  required for the winter-annual habit. Genbank accession BK004884	FRIGIDA like 1;(source:Araport11)
AT5G16490.1	protein_coding	ROP-interactive CRIB motif-containing protein 4	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. Protein most similar to RIC2 (family subgroup V). Gene is expressed in all tissues examined.Interacts with ROP2 during pavement cell morphogenesis and with ROP1 to promote apical F-actin assembly.	ROP-interactive CRIB motif-containing protein 4;(source:Araport11)
AT5G16410.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G16500.1	protein_coding	Protein kinase superfamily protein	Encodes a receptor-like cytoplasmic kinase localized in the membrane of pollen tube tip regions that controls micropylar pollen tube guidance in Arabidopsis.	Protein kinase superfamily protein;(source:Araport11)
AT5G16330.1	protein_coding	NC domain-containing protein-related		NC domain-containing protein-like protein;(source:Araport11)
AT5G16420.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT5G16340.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT5G16510.1	protein_coding	Alpha-1,4-glucan-protein synthase family protein	RGP5 is a member of the reversably-glycosylated family of proteins. Analyses using tagged RGP5 suggest that it is present in the cytosol and in association with the Golgi apparatus. Recombinant RGP5 does not have UDP-arabinose mutase activity based on an in vitro assay even though the related RGP1, RGP2, and RGP3 proteins do have activity in the same assay. RGP5 can form complexes with RGP1 and RGP2.	Alpha-1,4-glucan-protein synthase family protein;(source:Araport11)
AT5G16430.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G16350.1	protein_coding	O-acyltransferase (WSD1-like) family protein		O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT5G16520.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G16440.1	protein_coding	isopentenyl diphosphate isomerase 1	Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.	isopentenyl diphosphate isomerase 1;(source:Araport11)
AT5G16360.1	protein_coding	NC domain-containing protein-related		NC domain-containing protein-like protein;(source:Araport11)
AT5G16530.1	protein_coding	Auxin efflux carrier family protein	Encodes PIN5, an atypical member of the PIN family.  PIN5 is a functional auxin transporter that is required for auxin-mediated development. PIN5 does not have a direct role in cell-to-cell transport but regulates intracellular auxin homeostasis and metabolism. PIN5 localizes, unlike other characterized plasma membrane PIN proteins, to endoplasmic reticulum (ER), presumably mediating auxin flow from the cytosol to the lumen of the ER. It acts together with PIN8 in affecting pollen development and auxin homeostasis.	Auxin efflux carrier family protein;(source:Araport11)
AT5G16450.1	protein_coding	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase		Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase;(source:Araport11)
AT5G16370.1	protein_coding	acyl activating enzyme 5		acyl activating enzyme 5;(source:Araport11)
AT5G16540.1	protein_coding	zinc finger nuclease 3	Encodes a zinc finger protein.	zinc finger nuclease 3;(source:Araport11)
AT5G16460.1	protein_coding	Putative adipose-regulatory protein (Seipin)	Membrane protein involved in lipid droplet biogenesis primarily in embryos.	Putative adipose-regulatory protein (Seipin);(source:Araport11)
AT5G16550.1	protein_coding		Lipid droplet protein associated with LDAP3.	voltage-dependent L-type calcium channel subunit;(source:Araport11)
AT5G16470.1	protein_coding	zinc finger (C2H2 type) family protein		zinc finger (C2H2 type) family protein;(source:Araport11)
AT5G16560.1	protein_coding	Homeodomain-like superfamily protein	Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and  encodes a nuclear-localized protein in the GARP family of putative  transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G47360.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G47280.1	protein_coding	ADR1-like 3		ADR1-like 3;(source:Araport11)
AT5G47200.1	protein_coding	RAB GTPase homolog 1A	AtRabD2b encodes a Rab GTPase, which plays important roles in pollen development, germination and tube elongation. The mRNA is cell-to-cell mobile.	RAB GTPase homolog 1A;(source:Araport11)
AT5G47370.1	protein_coding	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein	homeobox-leucine zipper genes induced by auxin, but not by other phytohormones.  Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis.	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein;(source:Araport11)
AT5G47290.1	protein_coding	myb family transcription factor		myb family transcription factor;(source:Araport11)
AT5G47380.1	protein_coding	Protein of unknown function, DUF547		electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G47210.1	protein_coding	Hyaluronan / mRNA binding family		Hyaluronan / mRNA binding family;(source:Araport11)
AT5G47300.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G47220.1	protein_coding	ethylene responsive element binding factor 2	Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box–dependent transcription. Positive regulator of JA-responsive defense genes and resistance to  F. oxysporum and enhances JA inhibition of root elongation.	ethylene responsive element binding factor 2;(source:Araport11)
AT5G47390.1	protein_coding	myb-like transcription factor family protein	Encodes a circadian-regulated transcription factor which specifically controls cell expansion during leaf development by controlling ROS homeostasis. The mRNA is cell-to-cell mobile.	myb-like transcription factor family protein;(source:Araport11)
AT5G47310.1	protein_coding	PPPDE putative thiol peptidase family protein		PPPDE putative thiol peptidase family protein;(source:Araport11)
AT5G47230.1	protein_coding	ethylene responsive element binding factor 5	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. The mRNA is cell-to-cell mobile.	ethylene responsive element binding factor 5;(source:Araport11)
AT5G47400.1	protein_coding			sphingomyelin phosphodiesterase;(source:Araport11)
AT5G47320.1	protein_coding	ribosomal protein S19	Nuclear encoded mitochondrial ribosome subunit. The mRNA is cell-to-cell mobile.	ribosomal protein S19;(source:Araport11)
AT5G47240.1	protein_coding	nudix hydrolase homolog 8		nudix hydrolase homolog 8;(source:Araport11)
AT5G47330.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G47420.1	protein_coding	Tryptophan RNA-binding attenuator protein-like	PAWH2 along with PAWH1 is part of endoplasmic reticulum ubiquitin ligase complex with Arabidopsis HRD1 via interaction with EBS7. As such it plays a role in promoting protein degradation via the ERAD pathway.	Tryptophan RNA-binding attenuator protein-like protein;(source:Araport11)
AT5G47340.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G47430.1	protein_coding	DWNN domain, a CCHC-type zinc finger		DWNN domain, a CCHC-type zinc finger;(source:Araport11)
AT5G47250.1	protein_coding	LRR and NB-ARC domains-containing disease resistance protein		LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT5G47260.1	protein_coding	ATP binding;GTP binding;nucleotide binding;nucleoside-triphosphatases		putative disease resistance protein;(source:Araport11)
AT5G47180.1	protein_coding	Plant VAMP (vesicle-associated membrane protein) family protein		Plant VAMP (vesicle-associated membrane protein) family protein;(source:Araport11)
AT5G47350.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G47190.1	protein_coding	Ribosomal protein L19 family protein		Ribosomal protein L19 family protein;(source:Araport11)
AT5G23690.1	protein_coding	Polynucleotide adenylyltransferase family protein		Polynucleotide adenylyltransferase family protein;(source:Araport11)
AT5G23700.1	protein_coding			coiled-coil protein;(source:Araport11)
AT5G23600.1	protein_coding	RNA 2'-phosphotransferase, Tpt1 / KptA family		RNA 2-phosphotransferase, Tpt1 / KptA family;(source:Araport11)
AT5G23610.1	protein_coding			DYAD protein;(source:Araport11)
AT5G23710.1	protein_coding	DNA binding;DNA-directed RNA polymerases		DNA binding / DNA-directed RNA polymerase;(source:Araport11)
AT5G23520.1	protein_coding	smr (Small MutS Related) domain-containing protein		smr (Small MutS Related) domain-containing protein;(source:Araport11)
AT5G23530.1	protein_coding	carboxyesterase 18		carboxyesterase 18;(source:Araport11)
AT5G23630.1	protein_coding	phosphate deficiency response 2	A member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure.  MIA is also named PDR2 and was shown to be required for proper expression of SCARECROW (SCR), a key regulator of root patterning, and for stem-cell maintenance in Pi-deprived roots.	phosphate deficiency response 2;(source:Araport11)
AT5G23720.1	protein_coding	dual specificity protein phosphatase family protein	Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1).  One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells.  A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling.	dual specificity protein phosphatase family protein;(source:Araport11)
AT5G23540.1	protein_coding	Mov34/MPN/PAD-1 family protein		Mov34/MPN/PAD-1 family protein;(source:Araport11)
AT5G23550.1	protein_coding	Got1/Sft2-like vescicle transport protein family		Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT5G23650.1	protein_coding	Homeodomain-like transcriptional regulator		Homeodomain-like transcriptional regulator;(source:Araport11)
AT5G23570.1	protein_coding	XS domain-containing protein / XS zinc finger domain-containing protein-related	Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript.  Acts before RDR6 in this pathway. The mRNA is cell-to-cell mobile.	XS domain-containing protein / XS zinc finger domain-containing protein-like protein;(source:Araport11)
AT5G23660.1	protein_coding	homolog of Medicago truncatula MTN3	Encodes a member of the SWEET sucrose efflux transporter family proteins.	bidirectional sugar transporter SWEET12-like protein;(source:Araport11)
AT5G23580.1	protein_coding	calmodulin-like domain protein kinase 9	Member of a unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+	calmodulin-like domain protein kinase 9;(source:Araport11)
AT5G23670.1	protein_coding	long chain base2	Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis.  The protein is localized to the endoplasmic reticulum.	long chain base2;(source:Araport11)
AT5G23590.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G23680.1	protein_coding	Sterile alpha motif (SAM) domain-containing protein		Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT5G65260.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G65170.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT5G65270.1	protein_coding	RAB GTPase homolog A4A		RAB GTPase homolog A4A;(source:Araport11)
AT5G65180.1	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT5G65280.1	protein_coding	GCR2-like 1	Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.	GCR2-like 1;(source:Araport11)
AT5G65200.1	protein_coding	plant U-box 38	Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.	plant U-box 38;(source:Araport11)
AT5G65210.1	protein_coding	bZIP transcription factor family protein	Encodes TGA1, a redox-controlled regulator of systemic acquired resistance.  TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.	bZIP transcription factor family protein;(source:Araport11)
AT5G65110.1	protein_coding	acyl-CoA oxidase 2	Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis.	acyl-CoA oxidase 2;(source:Araport11)
AT5G65120.1	protein_coding			DNA-directed RNA polymerase subunit beta;(source:Araport11)
AT5G65220.1	protein_coding	Ribosomal L29 family protein 		Ribosomal L29 family protein;(source:Araport11)
AT5G65130.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G65230.1	protein_coding	myb domain protein 53	Member of the R2R3 factor gene family.	myb domain protein 53;(source:Araport11)
AT5G65140.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G65240.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G65160.1	protein_coding	tetratricopeptide repeat (TPR)-containing protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT5G65250.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G43680.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G45740.1	protein_coding	Ubiquitin domain-containing protein		Ubiquitin domain-containing protein;(source:Araport11)
AT5G45650.1	protein_coding	subtilase family protein		subtilase family protein;(source:Araport11)
AT5G45750.1	protein_coding	RAB GTPase homolog A1C		RAB GTPase homolog A1C;(source:Araport11)
AT5G45670.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G45760.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G45680.1	protein_coding	FK506-binding protein 13	Peptidyl-Prolyl Isomerase located in chloroplast thylakoid lumen The mRNA is cell-to-cell mobile.	FK506-binding protein 13;(source:Araport11)
AT5G45770.1	protein_coding	receptor like protein 55		receptor like protein 55;(source:Araport11)
AT5G45690.1	protein_coding	Protein of unknown function (DUF1264)		histone acetyltransferase (DUF1264);(source:Araport11)
AT5G45780.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes one of a group of LRR-RLKs, designated as CLAVATA3 INSENSITIVE RECEPTOR KINASES (CIKs), that act as co-receptors and have essential roles in regulating CLV3-mediated stem cell homeostasis.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G45700.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G45790.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT5G45800.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G45710.1	protein_coding	winged-helix DNA-binding transcription factor family protein	member of Heat Stress Transcription Factor (Hsf) family	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT5G45630.1	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT5G45720.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT5G45640.1	protein_coding	Subtilisin-like serine endopeptidase family protein		Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT5G45730.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G54520.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G54610.1	protein_coding	ankyrin	Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.	ankyrin;(source:Araport11)
AT5G54530.1	protein_coding	Protein of unknown function, DUF538		serine protease, putative (Protein of unknown function, DUF538);(source:Araport11)
AT5G54620.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G54540.1	protein_coding	Uncharacterised conserved protein (UCP012943)		Uncharacterized conserved protein (UCP012943);(source:Araport11)
AT5G54630.1	protein_coding	zinc finger protein-related		zinc finger protein-like protein;(source:Araport11)
AT5G54550.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G54640.1	protein_coding	Histone superfamily protein	Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein.	Histone superfamily protein;(source:Araport11)
AT5G54560.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G54650.1	protein_coding	formin homology5	Encodes a protein with similarity to formins that is involved in cytokinesis. Loss of function mutations exhibit delayed cellularization during endosperm development.  FH5 is expressed in the endosperm and the protein localizes to the cell plate.  FH5 was shown to be a maternally expressed imprinted gene.	formin homology5;(source:Araport11)
AT5G54570.1	protein_coding	beta glucosidase 41		beta glucosidase 41;(source:Araport11)
AT5G54660.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT5G54580.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes an RNA recognition motif (RRM) and is involved in C-> U RNA editing in mitochondria.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G54590.1	protein_coding	Protein kinase superfamily protein	Splice variant At5g54590.2 encodes CRLK1 (440-amino acid in length) calcium/calmodulin-regulated receptor-like kinase crucial for cold tolerance. CRLK1 is Primarily localized in the plasma membrane.	Protein kinase superfamily protein;(source:Araport11)
AT5G54600.1	protein_coding	Translation protein SH3-like family protein		Translation protein SH3-like family protein;(source:Araport11)
AT5G62700.1	protein_coding	tubulin beta chain 3	encodes tubulin beta-2/beta-3 chain The mRNA is cell-to-cell mobile.	tubulin beta chain 3;(source:Araport11)
AT5G62630.1	protein_coding	hipl2 protein precursor		hipl2 protein precursor;(source:Araport11)
AT5G62640.1	protein_coding	proline-rich family protein	nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC	proline-rich family protein;(source:Araport11)
AT5G62650.1	protein_coding	Tic22-like family protein		Tic22-like family protein;(source:Araport11)
AT5G62660.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G62670.1	protein_coding	H(+)-ATPase 11		H[+]-ATPase 11;(source:Araport11)
AT5G62680.1	protein_coding	Major facilitator superfamily protein	Encodes a high-affinity, proton-dependent glucosinolate-specific transporter that is crucial for the transport of both methionine- and tryptophan-derived glucosinolates to seeds.	Major facilitator superfamily protein;(source:Araport11)
AT5G62690.1	protein_coding	tubulin beta chain 2	encodes tubulin beta-2/beta-3 chain The mRNA is cell-to-cell mobile.	tubulin beta chain 2;(source:Araport11)
AT5G18160.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G18170.1	protein_coding	glutamate dehydrogenase 1	Encodes the 43 kDa alpha-subunit of the glutamate dehydrogenase with a putative mitochondrial transit polypeptide and NAD(H)- and alpha-ketoglutarate-binding domains. Mitochondrial localization confirmed by subcellular fractionation. Combines in several ratios with GDH2 protein (GDH-beta) to form seven isoenzymes. Catalyzes the cleavage of glycine residues. May be involved in ammonia assimilation under conditions of inorganic nitrogen excess. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.	glutamate dehydrogenase 1;(source:Araport11)
AT5G18260.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G18090.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G18100.1	protein_coding	copper/zinc superoxide dismutase 3	A putative peroxisomal CuZnSOD inducible by a high-light pulse.	copper/zinc superoxide dismutase 3;(source:Araport11)
AT5G18180.1	protein_coding	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein		H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein;(source:Araport11)
AT5G18270.1	protein_coding	Arabidopsis NAC domain containing protein 87		NAC domain containing protein 87;(source:Araport11)
AT5G18110.1	protein_coding	novel cap-binding protein		Putative cap-binding protein;(source:Araport11)
AT5G18190.1	protein_coding	Protein kinase family protein	Casein kinase involved in phosphorylation and ubiquination of RYR/PYLs, resulting in negative regulation of ABA response.	Protein kinase family protein;(source:Araport11)
AT5G18280.1	protein_coding	apyrase 2	Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY1 causes a complete inhibition of pollen germination.	apyrase 2;(source:Araport11)
AT5G18120.1	protein_coding	APR-like 7	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.	APR-like 7;(source:Araport11)
AT5G18200.1	protein_coding	UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases	encodes an adenylyltransferase	putative galactose-1-phosphate uridyltransferase;(source:Araport11)
AT5G18130.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G18210.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G18140.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G18220.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G18150.1	protein_coding	Methyltransferase-related protein		Methyltransferase-related protein;(source:Araport11)
AT5G18230.1	protein_coding	transcription regulator NOT2/NOT3/NOT5 family protein		transcription regulator NOT2/NOT3/NOT5 family protein;(source:Araport11)
AT5G18240.1	protein_coding	myb-related protein 1	Encodes MYR1 (MYR1).	myb-related protein 1;(source:Araport11)
AT5G18250.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G44010.1	protein_coding			fanconi anemia group F protein (FANCF);(source:Araport11)
AT5G43930.1	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G44020.1	protein_coding	HAD superfamily, subfamily IIIB acid phosphatase 		HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT5G43940.1	protein_coding	GroES-like zinc-binding dehydrogenase family protein	Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility.	GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G44030.1	protein_coding	cellulose synthase A4	Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. The mRNA is cell-to-cell mobile.	cellulose synthase A4;(source:Araport11)
AT5G43950.1	protein_coding	Plant protein of unknown function (DUF946)		vacuolar protein sorting-associated protein (DUF946);(source:Araport11)
AT5G44040.1	protein_coding			eisosome SEG2-like protein;(source:Araport11)
AT5G43960.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT5G44050.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT5G43970.1	protein_coding	translocase of outer membrane 22-V	Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion.	translocase of outer membrane 22-V;(source:Araport11)
AT5G44060.1	protein_coding			embryo sac development arrest protein;(source:Araport11)
AT5G43980.1	protein_coding	plasmodesmata-located protein 1	Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD.	plasmodesmata-located protein 1;(source:Araport11)
AT5G44070.1	protein_coding	phytochelatin synthase 1 (PCS1)	Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+. The mRNA is cell-to-cell mobile.	phytochelatin synthase 1 (PCS1);(source:Araport11)
AT5G43990.1	protein_coding	SET-domain containing protein lysine methyltransferase family protein	Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT5G44080.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT5G44000.1	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT5G57750.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G57760.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G57770.1	protein_coding	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region	FORKED-LIKE family member, part of Group 2 (Group 1 consists of FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT5G57690.1	protein_coding	diacylglycerol kinase 4		diacylglycerol kinase 4;(source:Araport11)
AT5G57700.1	protein_coding	BNR/Asp-box repeat family protein		BNR/Asp-box repeat family protein;(source:Araport11)
AT5G57710.1	protein_coding	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein	SMAX1 (SUPPRESSOR OF MAX2 1) is a member of an eight-gene family in Arabidopsis that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance. SMAX1 is an important component of KAR/SL signaling during seed germination and seedling growth, but is not necessary for all MAX2-dependent responses. The mRNA is cell-to-cell mobile.	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G57720.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G57740.1	protein_coding	XB3 ortholog 2 in Arabidopsis thaliana	Encodes a RING-type E3 ligase XBAT32. Mediates the proteasomal degradation of the ethylene biosynthetic enzyme, 1-aminocyclopropane-1-carboxylate synthase 7.	hypothetical protein;(source:Araport11)
AT5G22810.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT5G22900.1	protein_coding	cation/H+ exchanger 3	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 3;(source:Araport11)
AT5G22820.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G22830.1	protein_coding	magnesium (Mg) transporter 10	Transmembrane magnesium transporter that is essential for chloroplast development and photosynthesis. One of nine family members.	magnesium (Mg) transporter 10;(source:Araport11)
AT5G22910.1	protein_coding	cation/H+ exchanger  9	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 9;(source:Araport11)
AT5G22840.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G22920.1	protein_coding	CHY-type/CTCHY-type/RING-type Zinc finger protein	Encodes a protein with sequence similarity to RING, zinc finger proteins. Loss of function mutations show reduced (15%) stomatal aperture under non stress conditions.	CHY-type/CTCHY-type/RING-type Zinc finger protein;(source:Araport11)
AT5G22850.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G22930.1	protein_coding	Protein of unknown function (DUF1635)		enabled-like protein (DUF1635);(source:Araport11)
AT5G22860.1	protein_coding	Serine carboxypeptidase S28 family protein		Serine carboxypeptidase S28 family protein;(source:Araport11)
AT5G22940.1	protein_coding	FRA8 homolog	Homolog of FRA8 (AT2G28110), a member of a member of glycosyltransferase family 47; exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase.	glucuronoxylan glucuronosyltransferase, putative;(source:Araport11)
AT5G22870.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT5G22950.1	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT5G22880.1	protein_coding	histone B2	Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.	histone B2;(source:Araport11)
AT5G22960.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G22890.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	An unique homologue of STOP1 (AT1G34370) in Arabidopsis genome. Transformation to the stop1-mutant activated several genes that are regulated by STOP1, and conferred proton sensitive phenotype.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G22970.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G22980.1	protein_coding	serine carboxypeptidase-like 47		serine carboxypeptidase-like 47;(source:Araport11)
AT5G22990.1	protein_coding	C2H2-like zinc finger protein	Member of a small family of zinc finger containing putative transcription factors.Similar to GAZ.	C2H2-like zinc finger protein;(source:Araport11)
AT5G23830.1	protein_coding	MD-2-related lipid recognition domain-containing protein		MD-2-related lipid recognition domain-containing protein;(source:Araport11)
AT5G23930.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT5G23840.1	protein_coding	MD-2-related lipid recognition domain-containing protein		MD-2-related lipid recognition domain-containing protein;(source:Araport11)
AT5G23760.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT5G23940.1	protein_coding	HXXXD-type acyl-transferase family protein	Encodes PERMEABLE LEAVES3 (PEL3), a putative acyl-transferase.  Mutation in this locus results in altered trichome phenotype (trcichomes become tangled during leaf expansion).  Additional phenotype includes altered cuticle layer.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G23850.1	protein_coding	Arabidopsis thaliana protein of unknown function (DUF821)		O-glucosyltransferase rumi-like protein (DUF821);(source:Araport11)
AT5G23770.1	protein_coding	DOMAIN OF UNKNOWN FUNCTION 724 8	Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype	agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8);(source:Araport11)
AT5G23950.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G23870.1	protein_coding	Pectinacetylesterase family protein	Encodes a pectin acetylesterase that removes cell wall acetate associated with pectin formation in Arabidopsis leaves.	Pectinacetylesterase family protein;(source:Araport11)
AT5G23780.1	protein_coding	DOMAIN OF UNKNOWN FUNCTION 724 9	Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype	agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9);(source:Araport11)
AT5G23880.1	protein_coding	cleavage and polyadenylation specificity factor 100	Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation.  The protein interacts with a portion of a nuclear poly(A) polymerase.  It is likely to be a part of the mRNA 3'end formation apparatus.	cleavage and polyadenylation specificity factor 100;(source:Araport11)
AT5G23790.1	protein_coding	galactinol synthase 5	Predicted to encode a galactinol synthase.	galactinol synthase 5;(source:Araport11)
AT5G23890.1	protein_coding			GPI-anchored adhesin-like protein;(source:Araport11)
AT5G23800.1	protein_coding	DOMAIN OF UNKNOWN FUNCTION 724 10	Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype	agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 10);(source:Araport11)
AT5G23900.1	protein_coding	Ribosomal protein L13e family protein		Ribosomal protein L13e family protein;(source:Araport11)
AT5G23810.1	protein_coding	amino acid permease 7	Encodes nonfunctional amino acid transporter.  AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.	amino acid permease 7;(source:Araport11)
AT5G23910.1	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT5G23920.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G23820.1	protein_coding	MD-2-related lipid recognition domain-containing protein	ML3 can be modified by NEDD8 and ubiquitin. ML3 expression is regulated by NAI1. ML3 expression is regulated by MeJA, ethylene and wounding. ml3-3 is more susceptible against infections with Alternaria brassicicola and more resistant against infections with Pseudomonas syringae DC3000.	MD-2-related lipid recognition domain-containing protein;(source:Araport11)
AT5G46850.1	protein_coding			phosphatidylinositol-glycan biosynthesis class X-like protein;(source:Araport11)
AT5G46870.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	ACD11 binding partner, negatively regulates ROS-mediated defense response.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G57400.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G57410.1	protein_coding	Afadin/alpha-actinin-binding protein	Encodes a microtubule-associated protein.	Afadin/alpha-actinin-binding protein;(source:Araport11)
AT5G57370.1	protein_coding			U4/U6.U5 small nuclear ribonucleoprotein;(source:Araport11)
AT5G57380.1	protein_coding	Fibronectin type III domain-containing protein	Encodes a plant homeodomain protein VERNALIZATION INSENSITIVE 3 (VIN3).  In planta VIN3 and VRN2, VERNALIZATION 2, are part of a large protein complex that can include the polycomb group (PcG) proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF), and SWINGER (SWN or EZA1).  The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization.	Fibronectin type III domain-containing protein;(source:Araport11)
AT5G57390.1	protein_coding	AINTEGUMENTA-like 5	Encodes a member of the AP2 family of transcriptional regulators. May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.essential for the developmental  transition between the embryonic and vegetative  phases in plants. Overexpression results in the formation of somatic embryos on cotyledons. It is also required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions. Acts redundantly with PLT3 and 7 in lateral root pattern formation.	AINTEGUMENTA-like 5;(source:Araport11)
AT5G52090.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G52010.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT5G52100.1	protein_coding	Dihydrodipicolinate reductase, bacterial/plant	Is essential for chloroplast NAD(P)H dehydrogenase activity, which is involved in electron transfer between PSII and PSI. Likely functions in biogenesis or stabilization of the NAD(P)H dehydrogenase complex. The mRNA is cell-to-cell mobile.	Dihydrodipicolinate reductase, bacterial/plant;(source:Araport11)
AT5G52110.1	protein_coding	Protein of unknown function (DUF2930)		chaperone (DUF2930);(source:Araport11)
AT5G52020.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G51950.1	protein_coding	Glucose-methanol-choline (GMC) oxidoreductase family protein		Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT5G52030.1	protein_coding	TraB family protein		TraB family protein;(source:Araport11)
AT5G52120.1	protein_coding	phloem protein 2-A14		phloem protein 2-A14;(source:Araport11)
AT5G51960.1	protein_coding			complex 1 protein, LYR family protein;(source:Araport11)
AT5G52040.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes an arginine/serine-rich splicing factor. Transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS41 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G51970.1	protein_coding	GroES-like zinc-binding alcohol dehydrogenase family protein	Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro.	GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT5G52050.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT5G51980.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G52060.1	protein_coding	BCL-2-associated athanogene 1	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	BCL-2-associated athanogene 1;(source:Araport11)
AT5G51990.1	protein_coding	C-repeat-binding factor 4	encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to drought stress and abscisic acid treatment, but not to low temperature.	C-repeat-binding factor 4;(source:Araport11)
AT5G52070.1	protein_coding	Agenet domain-containing protein		Agenet domain-containing protein;(source:Araport11)
AT5G52000.1	protein_coding	importin alpha isoform 8	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. Target promoter of the male germline-specific transcription factor DUO1.	importin alpha isoform 8;(source:Araport11)
AT5G52080.1	protein_coding			F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G13670.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G13680.1	protein_coding	IKI3 family protein	A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. Mutants have no ncm5U (5-carbamoylmethyluridine).	IKI3 family protein;(source:Araport11)
AT5G13690.1	protein_coding	alpha-N-acetylglucosaminidase family / NAGLU family	Encodes an enzyme that is predicted to act as an alpha-N-acetylglucosaminidase (NAGLU). An naglu mutant arrests early in seed development but does not appear to have male or female gametophytic defects. Transcript levels for this gene are increased during reproductive development.	alpha-N-acetylglucosaminidase family / NAGLU family;(source:Araport11)
AT5G13700.1	protein_coding	polyamine oxidase 1	Encodes a protein with polyamine oxidase activity. The mRNA of this gene is only expressed in very low amounts in the organs where it was detected (light-grown plants).	polyamine oxidase 1;(source:Araport11)
AT5G13710.1	protein_coding	sterol methyltransferase 1	SMT1 controls the level of cholesterol in plants	sterol methyltransferase 1;(source:Araport11)
AT5G13720.1	protein_coding	Uncharacterised protein family (UPF0114)		Uncharacterized protein family (UPF0114);(source:Araport11)
AT5G13730.1	protein_coding	sigma factor 4	Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded  RNA polymerase PEP. Regulates the overall  quantity of NDH complexes and thus influences NDH activity.	sigma factor 4;(source:Araport11)
AT5G13740.1	protein_coding	zinc induced facilitator 1	Encodes ZIF1 (ZINC-INDUCED FACILITATOR1), a member of the Major Facilitator Superfamily (MFS) of membrane proteins which are found in all organisms and transport a wide range of small, organic molecules. Involved in a mechanism of Zn sequestration, possibly by transport of a Zn ligand or Zn-ligand complex into vacuoles. The mRNA is cell-to-cell mobile.	zinc induced facilitator 1;(source:Araport11)
AT5G38310.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G38320.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G38330.1	protein_coding	low-molecular-weight cysteine-rich 80	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	low-molecular-weight cysteine-rich 80;(source:Araport11)
AT5G38340.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G64270.1	protein_coding	splicing factor, putative		splicing factor;(source:Araport11)
AT5G64280.1	protein_coding	dicarboxylate transporter 2.2		dicarboxylate transporter 2.2;(source:Araport11)
AT5G64370.1	protein_coding	beta-ureidopropionase	PYD3 encodes a beta-ureidopropionase which, when expressed in E. coli, has been shown to convert beta-ureidopropionate into beta-alanine. It localizes to the cytosol and plays an important role in uracil degradation.	beta-ureidopropionase;(source:Araport11)
AT5G64210.1	protein_coding	alternative oxidase 2	encodes an isoform of alternative oxidase, which is expressed in rosettes, stems, and roots. Transcript accumulates in dry seeds and decreased upon germination and is not affected by actinomycin A. Protein is localized to mitochondria.	alternative oxidase 2;(source:Araport11)
AT5G64290.1	protein_coding	dicarboxylate transport 2.1		dicarboxylate transport 2.1;(source:Araport11)
AT5G64380.1	protein_coding	Inositol monophosphatase family protein		Inositol monophosphatase family protein;(source:Araport11)
AT5G64220.1	protein_coding	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains	CAMTA2 proteins bind to the AtALMT1 promoter at in vitro. The gene itself is Al inducible, and AtALMT1 expression is partially repressed in camta2 mutant. The mRNA is cell-to-cell mobile.	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain;(source:Araport11)
AT5G64300.1	protein_coding	GTP cyclohydrolase II	encodes GTP cyclohydrolase II that can functionally complement E. coli mutant deficient in this gene. It also has 3,4-dihydroxy-2-butanone-4-phosphate synthase activity which makes it a bifunctional enzyme involved in the formation of the pyrimidine and of the carbohydrate from GTP and ribulose-5-phosphate, respectively The mRNA is cell-to-cell mobile.	GTP cyclohydrolase II;(source:Araport11)
AT5G64390.1	protein_coding	RNA-binding KH domain-containing protein	encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl. The mRNA is cell-to-cell mobile.	RNA-binding KH domain-containing protein;(source:Araport11)
AT5G64230.1	protein_coding			1,8-cineole synthase;(source:Araport11)
AT5G64310.1	protein_coding	arabinogalactan protein 1	Encodes arabinogalactan-protein (AGP1). The mRNA is cell-to-cell mobile.	arabinogalactan protein 1;(source:Araport11)
AT5G64400.1	protein_coding			CHCH domain protein;(source:Araport11)
AT5G64240.1	protein_coding	metacaspase 3	Encodes a type I metacaspase. Two Arabidopsis metacaspases, AT1G02170 (MC1) and AT4G25110 (MC2)  antagonistically control programmed cell death in Arabidopsis. MC1 is a positive regulator of cell death and requires conserved caspase-like putative catalytic residues for its function. MC2 negatively regulates cell death. This function is independent of the putative catalytic residues.  A third type I Arabidopsis metacaspase is MC3 (AT5g64240).	metacaspase 3;(source:Araport11)
AT5G64320.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	MTL1 is a mitochondria localized PRR protein involved in mitochondrial protein translation and group II intron splicing.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G64410.1	protein_coding	oligopeptide transporter 4	oligopeptide transporter	oligopeptide transporter 4;(source:Araport11)
AT5G64250.1	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT5G64330.1	protein_coding	Phototropic-responsive NPH3 family protein	Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1. Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light.  Protein contains multiple protein-protein interaction domains.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G64420.1	protein_coding	DNA polymerase V family		DNA polymerase V family;(source:Araport11)
AT5G64260.1	protein_coding	EXORDIUM like 2		EXORDIUM like 2;(source:Araport11)
AT5G64340.1	protein_coding	sequence-specific DNA binding transcription factors;transcription regulators	Encodes a bHLH(basic helix-loop-helix)-type transcription factor SAC51 [suppressor of acaulis 51].  Upregulation of SAC51 reverses the dwarf phenotype caused by a loss-of-function mutation in ACL5 (Arabidopsis thaliana ACAULIS 5) gene, suggesting that activation of SAC51 may lead to the expression of a subset of genes required for stem elongation.	transcription factor SAC51;(source:Araport11)
AT5G64350.1	protein_coding	FK506-binding protein 12	Encodes FK506-binding protein 12 (FKBP12 or FKP12). FKP12 overexpression dramatically enhances rapamycin sensitivity, whereas rapamycin inhibition is relieved in transgenic plants deficient in FKP12.	FK506-binding protein 12;(source:Araport11)
AT5G64360.1	protein_coding	Chaperone DnaJ-domain superfamily protein	EIP9 interacts with EMF1 to regulate flowering. It functions partially redundantly with SDJ2 and SDJ3 and interacts with SUVH1 and SUVH3 to form a SUVH-SDJ complex. The complex binds promoters with DNA methylation and mediates transcriptional activation of promoter methylated genes.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G60990.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT5G60910.1	protein_coding	AGAMOUS-like 8	MADS box gene negatively regulated  by APETALA1	AGAMOUS-like 8;(source:Araport11)
AT5G61000.1	protein_coding	Replication factor-A protein 1-related		Replication factor-A protein 1-like protein;(source:Araport11)
AT5G60920.1	protein_coding	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family	Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis.  Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family;(source:Araport11)
AT5G60930.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G60940.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Member of CstF complex.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G60950.1	protein_coding	COBRA-like protein 5 precursor		COBRA-like protein 5 precursor;(source:Araport11)
AT5G60960.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes PNM1 (for PPR protein localized to the nucleus and mitochondria 1), a PPR protein that is dual localized to mitochondria and nuclei. Loss of PNM1 function in mitochondria, but not in nuclei, is lethal for the embryo. In mitochondria, it is associated with polysomes and may play a role in translation.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G60970.1	protein_coding	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5	TCP gene involved in heterochronic control of leaf differentiation. Transcription factor which controls thermomorphogenesis by positively regulating PIF4 activity.	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5;(source:Araport11)
AT5G60980.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT5G60900.1	protein_coding	receptor-like protein kinase 1	Encodes a receptor-like protein kinase.	receptor-like protein kinase 1;(source:Araport11)
AT5G66730.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT5G66740.1	protein_coding	Protein of unknown function (DUF620)		spindle assembly abnormal protein (DUF620);(source:Araport11)
AT5G66660.1	protein_coding	Protein of unknown function (DUF677)		pectinesterase, putative (DUF677);(source:Araport11)
AT5G66750.1	protein_coding	chromatin remodeling 1	Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1  shows some resistance to agrobacterium-mediated root transformation.	chromatin remodeling 1;(source:Araport11)
AT5G66670.1	protein_coding	Protein of unknown function (DUF677)		pectinesterase, putative (DUF677);(source:Araport11)
AT5G66760.1	protein_coding	succinate dehydrogenase 1-1	One of two genes in Arabidopsis that encode a flavoprotein subunit of the  mitochondrial succinate dehydrogenase complex. The mRNA is cell-to-cell mobile.	succinate dehydrogenase 1-1;(source:Araport11)
AT5G66680.1	protein_coding	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein	Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein;(source:Araport11)
AT5G66690.1	protein_coding	UDP-Glycosyltransferase superfamily protein	UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-<i>O</i>-glucoside and sinapyl alcohol 4-<i>O</i>-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-<i>O</i>-glucosides. The mRNA is cell-to-cell mobile.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G66700.1	protein_coding	homeobox 53	Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5.  AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.	homeobox 53;(source:Araport11)
AT5G66710.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G66720.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT5G40200.1	protein_coding	DegP protease 9	Encodes a putative DegP protease. The mRNA is cell-to-cell mobile.	DegP protease 9;(source:Araport11)
AT5G40210.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G40140.1	protein_coding	RING/U-box superfamily protein with ARM repeat domain	Encodes a ubiquitin E3 ligase of the U-box  type that mediates the proteasomal degradation of BZR1 in a root-specific manner.	RING/U-box superfamily protein with ARM repeat domain-containing protein;(source:Araport11)
AT5G40220.1	protein_coding	AGAMOUS-like 43		AGAMOUS-like 43;(source:Araport11)
AT5G40230.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G40150.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G40240.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G40160.1	protein_coding	Ankyrin repeat family protein	Encodes ankyrin repeat protein EMB506. Mutations in this locus result in embryo lethality.	Ankyrin repeat family protein;(source:Araport11)
AT5G40250.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G40170.1	protein_coding	receptor like protein 54		receptor like protein 54;(source:Araport11)
AT5G40260.1	protein_coding	Nodulin MtN3 family protein	Encodes RPG1 (RUPTURED POLLEN GRAIN1), a member of the MtN3/saliva gene family. Crucial for exine pattern formation and cell integrity of microspores.	Nodulin MtN3 family protein;(source:Araport11)
AT5G40180.1	protein_coding			Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein;(source:Araport11)
AT5G40190.1	protein_coding	RNA ligase/cyclic nucleotide phosphodiesterase family protein	Identified in a screen for calmodulin-binding proteins obtained from an auxin treated cDNA library.	RNA ligase/cyclic nucleotide phosphodiesterase family protein;(source:Araport11)
AT5G40270.1	protein_coding	HD domain-containing metal-dependent phosphohydrolase family protein	Protein of unknown function involved in chloroplast development.	HD domain-containing metal-dependent phosphohydrolase family protein;(source:Araport11)
AT5G40280.1	protein_coding	Prenyltransferase family protein	encodes a beta subunit of farnesyl-trans-transferase, which is involved in meristem organization and ABA-mediated signal transduction pathway. Mutant phenotypes have been observed in meristem organization, and response to abscisic acid and drought. The mRNA is cell-to-cell mobile.	Prenyltransferase family protein;(source:Araport11)
AT5G40290.1	protein_coding	HD domain-containing metal-dependent phosphohydrolase family protein		HD domain-containing metal-dependent phosphohydrolase family protein;(source:Araport11)
AT5G55390.1	protein_coding	ENHANCED DOWNY MILDEW 2	Encodes EDM2 (enhanced downy mildew 2).  The predicted protein bears typical features of transcriptional regulators.  EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region.  Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif.  Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1).  EDM2 may function as a direct or indirect regulator of RPP7 expression.	ENHANCED DOWNY MILDEW 2;(source:Araport11)
AT5G55310.1	protein_coding	DNA topoisomerase 1 beta	Encodes one of two Arabidopsis type-I DNA topoisomerase I genes.  Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.	DNA topoisomerase 1 beta;(source:Araport11)
AT5G55400.1	protein_coding	Actin binding Calponin homology (CH) domain-containing protein	Encodes a member of the fimbrin family. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	Actin binding Calponin homology (CH) domain-containing protein;(source:Araport11)
AT5G55320.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein		MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT5G55490.1	protein_coding	gamete expressed protein 1	Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.	gamete expressed protein 1;(source:Araport11)
AT5G55410.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G55330.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein		MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT5G55500.1	protein_coding	beta-1,2-xylosyltransferase	Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions. The mRNA is cell-to-cell mobile.	beta-1,2-xylosyltransferase;(source:Araport11)
AT5G55420.1	pseudogene		Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]	pseudogene of Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G55340.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein		MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT5G55510.1	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein		Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT5G55430.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G55350.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein		MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT5G55520.1	protein_coding			kinesin-like protein;(source:Araport11)
AT5G55440.1	protein_coding	Protein of unknown function (DUF295)		F-box protein, putative (DUF295);(source:Araport11)
AT5G55360.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein		MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT5G55530.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G55450.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G55370.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein		MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT5G55540.1	protein_coding	tornado 1	Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway.	tornado 1;(source:Araport11)
AT5G55460.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G55380.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein		MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT5G55550.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G55470.1	protein_coding	Na+/H+ (sodium hydrogen) exchanger 3	member of Sodium proton exchanger family	Na+/H+ (sodium hydrogen) exchanger 3;(source:Araport11)
AT5G55480.1	protein_coding	SHV3-like 1	Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. The mRNA is cell-to-cell mobile.	SHV3-like 1;(source:Araport11)
AT5G62000.1	protein_coding	auxin response factor 2	Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation. The mRNA is cell-to-cell mobile.	auxin response factor 2;(source:Araport11)
AT5G62080.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G62090.1	protein_coding	SEUSS-like 2	Encodes a protein that functions with LUH to promote Al binding to the root cell wall.	SEUSS-like 2;(source:Araport11)
AT5G62100.1	protein_coding	BCL-2-associated athanogene 2	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	BCL-2-associated athanogene 2;(source:Araport11)
AT5G62020.1	protein_coding	heat shock transcription factor  B2A	member of Heat Stress Transcription Factor (Hsf) family The mRNA is cell-to-cell mobile.	heat shock transcription factor B2A;(source:Araport11)
AT5G62030.1	protein_coding	diphthamide synthesis DPH2 family protein		diphthamide synthesis DPH2 family protein;(source:Araport11)
AT5G62110.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT5G62040.1	protein_coding	PEBP (phosphatidylethanolamine-binding protein) family protein	BFT is a member of The FLOWERING LOCUS T (FT)/TERMINAL FLOWER 1 (TFL1)  gene family that encodes regulators involved in control of flower development.	PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11)
AT5G62120.1	protein_coding	response regulator 23	member of Response Regulator: B- Type	response regulator 23;(source:Araport11)
AT5G62050.1	protein_coding	homolog of yeast oxidase assembly 1 (OXA1)	essential factor for protein sorting and assembly into membranes	inner membrane OXA1-like protein;(source:Araport11)
AT5G62130.1	protein_coding	Per1-like family protein		Per1-like family protein;(source:Araport11)
AT5G62060.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G62140.1	protein_coding			ATP-dependent Clp protease ATP-binding subunit;(source:Araport11)
AT5G62070.1	protein_coding	IQ-domain 23	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 23;(source:Araport11)
AT5G62150.1	protein_coding	peptidoglycan-binding LysM domain-containing protein		peptidoglycan-binding LysM domain-containing protein;(source:Araport11)
AT5G62160.1	protein_coding	zinc transporter 12 precursor	member of Fe(II) transporter isolog family	zinc transporter 12 precursor;(source:Araport11)
AT5G62170.1	protein_coding			LOW protein: M-phase inducer phosphatase-like protein;(source:Araport11)
AT5G16610.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G16620.1	protein_coding	hydroxyproline-rich glycoprotein family protein	chloroplast protein import (Tic40)	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G16630.1	protein_coding	DNA repair protein Rad4 family		DNA repair protein Rad4 family;(source:Araport11)
AT5G16640.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G16650.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G16580.1	protein_coding	beta glucosidase 2		beta glucosidase 2;(source:Araport11)
AT5G16660.1	protein_coding			Low-density receptor-like protein;(source:Araport11)
AT5G16590.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G16600.1	protein_coding	myb domain protein 43	Encodes a putative transcription factor (MYB43).	myb domain protein 43;(source:Araport11)
AT5G59700.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G59630.1	pseudogene			pseudogene of serine carboxypeptidase-like 51;(source:Araport11)
AT5G59710.1	protein_coding	VIRE2 interacting protein 2	Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator. The mRNA is cell-to-cell mobile.	VIRE2 interacting protein 2;(source:Araport11)
AT5G59640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 5.1e-159 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT5G59720.1	protein_coding	heat shock protein 18.2	encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.	heat shock protein 18.2;(source:Araport11)
AT5G59650.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G59730.1	protein_coding	exocyst subunit exo70 family protein H7	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. The mRNA is cell-to-cell mobile.	exocyst subunit exo70 family protein H7;(source:Araport11)
AT5G59660.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G59740.1	protein_coding	UDP-N-acetylglucosamine (UAA) transporter family		UDP-N-acetylglucosamine (UAA) transporter family;(source:Araport11)
AT5G59670.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G59750.1	protein_coding	DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II		monofunctional riboflavin biosynthesis protein RIBA 3;(source:Araport11)
AT5G59680.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G59760.1	protein_coding	Protein of unknown function (DUF1635)		hypothetical protein (DUF1635);(source:Araport11)
AT5G59690.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT5G59770.1	protein_coding	Protein-tyrosine phosphatase-like, PTPLA		Protein-tyrosine phosphatase-like, PTPLA;(source:Araport11)
AT5G59780.1	protein_coding	myb domain protein 59	Encodes a putative transcription factor (MYB59). In roots it  is involved in K+/NO3- transport and expression of the NPF7.3 transporter.	myb domain protein 59;(source:Araport11)
AT5G57870.1	protein_coding	MIF4G domain-containing protein / MA3 domain-containing protein	Encodes a putative eukaryotic translation initiation factor The mRNA is cell-to-cell mobile.	MIF4G domain-containing protein / MA3 domain-containing protein;(source:Araport11)
AT5G57790.1	protein_coding		Encodes a nuclear localized protein of unknown function that is involved in pollen and embryo sac development.	hypothetical protein;(source:Araport11)
AT5G57880.1	protein_coding	multipolar spindle 1	Encodes MULTIPOLAR SPINDLE 1 (MPS1), involved in meiotic spindle organization.	multipolar spindle 1;(source:Araport11)
AT5G57800.1	protein_coding	Fatty acid hydroxylase superfamily	encodes a transmembrane protein with similarity to the sterol desaturase family at the N-terminus and to the short-chain dehydrogenase/reductase family at the C-terminus. Mutant analyses indicate this protein is involved in cuticle membrane and wax biosynthesis. The mRNA is cell-to-cell mobile.	Fatty acid hydroxylase superfamily;(source:Araport11)
AT5G57970.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT5G57890.1	protein_coding	Glutamine amidotransferase type 1 family protein		Glutamine amidotransferase type 1 family protein;(source:Araport11)
AT5G57810.1	protein_coding	tetraspanin15	Member of TETRASPANIN family	tetraspanin15;(source:Araport11)
AT5G57980.1	protein_coding	RNA polymerase II fifth largest subunit, C	NRPB5-like protein of unknown function; homologous to budding yeast RPB5	RNA polymerase II fifth largest subunit, C;(source:Araport11)
AT5G57820.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT5G57900.1	protein_coding	SKP1 interacting partner 1	F-box protein, interacts with SKP1/ASK1 subunit of SCF ubiquitin ligase in a glucose-dependent manner	SKP1 interacting partner 1;(source:Araport11)
AT5G57990.1	protein_coding	ubiquitin-specific protease 23	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 23;(source:Araport11)
AT5G57830.1	protein_coding	Protein of unknown function, DUF593		zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT5G57910.1	protein_coding			ribosomal RNA small subunit methyltransferase G;(source:Araport11)
AT5G58000.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT5G57840.1	protein_coding	HXXXD-type acyl-transferase family protein	encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G57920.1	protein_coding	early nodulin-like protein 10		early nodulin-like protein 10;(source:Araport11)
AT5G57850.1	protein_coding	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein	ADCL encodes a protein that acts as a 4-amino-4-deoxychorismate lyase. It catalyzes the production 4-aminobenzoate (pABA) production which is required for folate biosynthesis. The enzyme localizes to chloroplasts based on an import assay and GFP localization experiments.	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT5G57930.1	protein_coding	Arabidopsis thaliana protein of unknown function (DUF794)	ACCUMULATION OF PHOTOSYSTEM ONE 2	APO RNA-binding protein (DUF794);(source:Araport11)
AT5G57860.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G57940.1	protein_coding	cyclic nucleotide gated channel 5	Encodes a cyclic GMP activated Ca2+-permeable cation channel in the plasma membrane of guard cells.	cyclic nucleotide gated channel 5;(source:Araport11)
AT5G57950.1	protein_coding	26S proteasome regulatory subunit, putative		26S proteasome regulatory subunit;(source:Araport11)
AT5G57960.1	protein_coding	GTP-binding protein, HflX		GTP-binding protein, HflX;(source:Araport11)
AT5G57640.1	protein_coding	GCK domain-containing protein		GCK domain-containing protein;(source:Araport11)
AT5G57560.1	protein_coding	Xyloglucan endotransglucosylase/hydrolase family protein	Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli.	Xyloglucan endotransglucosylase/hydrolase family protein;(source:Araport11)
AT5G57480.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G57650.1	protein_coding	eukaryotic translation initiation factor-related		eukaryotic translation initiation factor-like protein;(source:Araport11)
AT5G57570.1	protein_coding	GCK domain-containing protein		GCK domain-containing protein;(source:Araport11)
AT5G57490.1	protein_coding	voltage dependent anion channel 4	Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.	voltage dependent anion channel 4;(source:Araport11)
AT5G57580.1	protein_coding	Calmodulin-binding protein		Calmodulin-binding protein;(source:Araport11)
AT5G57500.1	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT5G57590.1	protein_coding	adenosylmethionine-8-amino-7-oxononanoate transaminases	Encodes a bifunctional enzyme with both dethiobiotin synthetase and diaminopelargonic acid aminotransferase activities that is involved in biotin synthesis.	adenosylmethionine-8-amino-7-oxononanoate transaminase;(source:Araport11)
AT5G57510.1	protein_coding			cotton fiber protein;(source:Araport11)
AT5G57520.1	protein_coding	zinc finger protein 2	Encodes a zinc finger protein containing only a single zinc finger.	zinc finger protein 2;(source:Araport11)
AT5G57610.1	protein_coding	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain		kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT5G57620.1	protein_coding	myb domain protein 36	MYB36 is a transcriptional regulator that acts to promote differentiation of the endodermis during root development. It promotes the development the Casparian band in part by regulating the expression of genes involved in localizing lignin biosynthetic machinery to the Casparian band. MYB36 binds to and regulates the expression of factors involved in producing the Casparian band including  CASP1, PER64, and ESB1.	myb domain protein 36;(source:Araport11)
AT5G57530.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 12		xyloglucan endotransglucosylase/hydrolase 12;(source:Araport11)
AT5G57540.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 13	Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC   2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity.	xyloglucan endotransglucosylase/hydrolase 13;(source:Araport11)
AT5G57630.1	protein_coding	CBL-interacting protein kinase 21	CBL-interacting protein kinase.When mutated plants are hypersensitive to salt and osmotic stress.	CBL-interacting protein kinase 21;(source:Araport11)
AT5G57550.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 25	xyloglucan endotransglycosylase-related protein (XTR3)	xyloglucan endotransglucosylase/hydrolase 25;(source:Araport11)
AT5G14080.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G14170.1	protein_coding	SWIB/MDM2 domain superfamily protein	CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates. Also named as SWP73B, a subunit of the SWI/SNF chromatin remodeling complex. Acts as important modulator of major developmental pathways.	SWIB/MDM2 domain superfamily protein;(source:Araport11)
AT5G14090.1	protein_coding		LAZY1 is required for gravitropic response. Mutants have abnormal shoot angles and abnormal root gravitropism. LZY1 affects the redistribution of auxin in response to gravity in shoots and roots via an unknown mechanism.	regulator of nonsense transcript protein;(source:Araport11)
AT5G14180.1	protein_coding	Myzus persicae-induced lipase 1		Myzus persicae-induced lipase 1;(source:Araport11)
AT5G14100.1	protein_coding	non-intrinsic ABC protein 14	member of NAP subfamily	non-intrinsic ABC protein 14;(source:Araport11)
AT5G14110.1	protein_coding	Protein of unknown function (DUF 3339)		peroxidase (DUF 3339);(source:Araport11)
AT5G14200.1	protein_coding	isopropylmalate dehydrogenase 1	The AtIMD1 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids. Encodes methylthioalkylmalate dehydrogenase. Involved in glucosinolate biosynthesis, in methionine chain elongation. The mRNA is cell-to-cell mobile.	isopropylmalate dehydrogenase 1;(source:Araport11)
AT5G14210.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G14120.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G14130.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G14050.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G14140.1	protein_coding	zinc ion binding;nucleic acid binding;zinc ion binding		nucleic acid binding / zinc ion binding protein;(source:Araport11)
AT5G14060.1	protein_coding	Aspartate kinase family protein	lysine-sensitive aspartate kinase	Aspartate kinase family protein;(source:Araport11)
AT5G14150.1	protein_coding	Protein of unknown function, DUF642		Emb:.1 protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT5G14070.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2 and suppress ORA59 promoter activity. ROXY2, together with ROXY1 (AT3G02000), controls anther development. roxy1 roxy2 double mutants are sterile and do not produce pollen.	Thioredoxin superfamily protein;(source:Araport11)
AT5G14160.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G64600.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT5G64610.1	protein_coding	histone acetyltransferase of the MYST family 1	Encodes an enzyme with histone acetyltransferase activity. HAM1 primarily acetylate histone H4, but also  display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4  reduces radioactive acetylation by either HAM1. HAM1 acetylates histone H4 lysine 5.	histone acetyltransferase of the MYST family 1;(source:Araport11)
AT5G64530.1	protein_coding	xylem NAC domain 1		xylem NAC domain 1;(source:Araport11)
AT5G64620.1	protein_coding	cell wall / vacuolar inhibitor of fructosidase 2	Plant cell wall (CWI) and vacuolar invertases (VI)  play important roles in carbohydrate metabolism, stress responses  and sugar signaling.	cell wall / vacuolar inhibitor of fructosidase 2;(source:Araport11)
AT5G64540.1	protein_coding			mucin-like protein;(source:Araport11)
AT5G64630.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems.  In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively.  Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G64550.1	protein_coding	loricrin-related		loricrin-like protein;(source:Araport11)
AT5G64640.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT5G64560.1	protein_coding	magnesium transporter 9	Transmembrane magnesium transporter that is located in plasma membrane of microspores to take up Mg from the locule. One of 9 family members.	magnesium transporter 9;(source:Araport11)
AT5G64650.1	protein_coding	Ribosomal protein L17 family protein		Ribosomal protein L17 family protein;(source:Araport11)
AT5G64570.1	protein_coding	beta-D-xylosidase 4	Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.	beta-D-xylosidase 4;(source:Araport11)
AT5G64660.1	protein_coding	CYS, MET, PRO, and GLY protein 2		CYS, MET, PRO, and GLY protein 2;(source:Araport11)
AT5G64580.1	protein_coding	AAA-type ATPase family protein	Strong interaction with TIC inner envelope protein translocon which consists of Tic20/Tic56/Tic100/Tic214(Ycf1)(DOI:10.1105/tpc.18.00357).	AAA-type ATPase family protein;(source:Araport11)
AT5G64670.1	protein_coding	Ribosomal protein L18e/L15 superfamily protein		Ribosomal protein L18e/L15 superfamily protein;(source:Araport11)
AT5G64590.1	protein_coding			NYN domain protein;(source:Araport11)
AT5G64680.1	protein_coding			mediator-associated protein;(source:Araport11)
AT5G64690.1	protein_coding	neurofilament triplet H protein-related		neurofilament triplet H protein-like protein;(source:Araport11)
AT5G40060.1	protein_coding	Disease resistance protein (NBS-LRR class) family		Disease resistance protein (NBS-LRR class) family;(source:Araport11)
AT5G40070.1	protein_coding	MADS-box family protein		MADS-box family protein;(source:Araport11)
AT5G40080.1	protein_coding	Mitochondrial ribosomal protein L27		Mitochondrial ribosomal protein L27;(source:Araport11)
AT5G40090.1	protein_coding	Disease resistance protein (TIR-NBS class)		Disease resistance protein (TIR-NBS class);(source:Araport11)
AT5G40100.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G66910.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family	RPW8 -CNL gene is required for signal transduction of TNLs; functionally redundant to NRG1.1.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G66830.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT5G66920.1	protein_coding	SKU5  similar 17		SKU5 similar 17;(source:Araport11)
AT5G66840.1	protein_coding	SAP domain-containing protein		SAP domain-containing protein;(source:Araport11)
AT5G66930.1	protein_coding			meiotically up-regulated protein;(source:Araport11)
AT5G66850.1	protein_coding	mitogen-activated protein kinase kinase kinase 5	Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK3 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens.	mitogen-activated protein kinase kinase kinase 5;(source:Araport11)
AT5G66860.1	protein_coding	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain		Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein;(source:Araport11)
AT5G66870.1	protein_coding	ASYMMETRIC LEAVES 2-like 1	Encodes LOB domain protein whose overexpression results in KNOX gene repression. Overexpression also results in plants with hyponastic leaves, downward pointing flowers and reduced apical dominance.  May be involved in the transcriptional regulation of the homeobox gene BP (brevipedicellus) during lateral organ differentiation.  Acts together with AS2 in proximal-distal symmetry determination.	ASYMMETRIC LEAVES 2-like 1;(source:Araport11)
AT5G66880.1	protein_coding	sucrose nonfermenting 1(SNF1)-related protein kinase 2.3	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.  Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth. The mRNA is cell-to-cell mobile.	sucrose nonfermenting 1(SNF1)-related protein kinase 2.3;(source:Araport11)
AT5G66800.1	protein_coding			membrane-associated kinase regulator-like protein;(source:Araport11)
AT5G66890.1	protein_coding	Leucine-rich repeat (LRR) family protein	RPW8 -CNL gene.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G66810.1	protein_coding			Ran-binding protein in the microtubule-organising centre protein;(source:Araport11)
AT5G66900.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family	RPW8 -CNL gene is required for signal transduction of TNLs; functionally redundant to NRG1.2. Exhibits autoimmunity.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G66820.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G41750.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G60540.1	protein_coding	pyridoxine biosynthesis 2	Encodes a protein predicted to function in tandem with PDX1 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. PDX2 is predicted to function as glutaminase within the complex.	pyridoxine biosynthesis 2;(source:Araport11)
AT5G60450.1	protein_coding	auxin response factor 4	Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.	auxin response factor 4;(source:Araport11)
AT5G60460.1	protein_coding	Preprotein translocase Sec, Sec61-beta subunit protein		Preprotein translocase Sec, Sec61-beta subunit protein;(source:Araport11)
AT5G60550.1	protein_coding	geminivirus rep interacting kinase 2	Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro.	geminivirus rep interacting kinase 2;(source:Araport11)
AT5G60390.1	protein_coding	GTP binding Elongation factor Tu family protein		GTP binding Elongation factor Tu family protein;(source:Araport11)
AT5G60470.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G60560.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G60400.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G60480.1	protein_coding	homeobox protein 26		homeobox protein 26;(source:Araport11)
AT5G60570.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G60410.1	protein_coding	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain	Encodes  a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis.  Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation.  signaling	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein;(source:Araport11)
AT5G60490.1	protein_coding	FASCICLIN-like arabinogalactan-protein 12	Encodes a member of fasciclin-like arabinogalactan proteins (FLAs) containing a cell adhesion fasciclin (FAS) domain. Mutations result in altered stem biomechanics with reduced tensile strength and reduced tensile modulus of elasticity, as well as altered cell wall architecture and composition, with increased cellulose microfibril angle, reduced arabinose, galactose and cellulose content. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan-protein 12;(source:Araport11)
AT5G60580.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G60500.1	protein_coding	Undecaprenyl pyrophosphate synthetase family protein		Undecaprenyl pyrophosphate synthetase family protein;(source:Araport11)
AT5G60430.1	protein_coding	drug transmembrane transporters;antiporters		antiporter/ drug transporter;(source:Araport11)
AT5G60510.1	protein_coding	Undecaprenyl pyrophosphate synthetase family protein		Undecaprenyl pyrophosphate synthetase family protein;(source:Araport11)
AT5G60440.1	protein_coding	AGAMOUS-like 62	AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development.	AGAMOUS-like 62;(source:Araport11)
AT5G60520.1	protein_coding	Late embryogenesis abundant (LEA) protein-related		Late embryogenesis abundant (LEA) protein-like protein;(source:Araport11)
AT5G60530.1	protein_coding	late embryogenesis abundant protein-related / LEA protein-related		late embryogenesis abundant protein-related / LEA protein-like protein;(source:Araport11)
AT5G05000.1	protein_coding	translocon at the outer envelope membrane of chloroplasts 34	Outer membrane GTPase protein that may function in import of nuclear encoded proteins into the chloroplast. Phosphorylation of the G-domains regulate translocon assembly.	translocon at the outer envelope membrane of chloroplasts 34;(source:Araport11)
AT5G05010.1	protein_coding	clathrin adaptor complexes medium subunit family protein		clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT5G05100.1	protein_coding	Single-stranded nucleic acid binding R3H protein		Single-stranded nucleic acid binding R3H protein;(source:Araport11)
AT5G05020.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G04940.1	protein_coding	SU(VAR)3-9 homolog 1	Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. SUVH1 has been shown to have a preference for binding methylated DNA.	SU(VAR)3-9 homolog 1;(source:Araport11)
AT5G05110.1	protein_coding	Cystatin/monellin family protein		Cystatin/monellin family protein;(source:Araport11)
AT5G05030.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT5G04950.1	protein_coding	nicotianamine synthase 1	Encodes a nicotianamide synthase.	nicotianamine synthase 1;(source:Araport11)
AT5G05120.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G05040.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT5G04960.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily	Encodes a protein that modulates the activity of pectin methylesterase within the cell wall.	Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT5G05130.1	protein_coding	DNA/RNA helicase protein		DNA/RNA helicase protein;(source:Araport11)
AT5G05050.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT5G04970.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT5G05060.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT5G04980.1	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT5G05070.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT5G04990.1	protein_coding	SAD1/UNC-84 domain protein 1	Encodes a member of the Sad1/UNC-84 (SUN)-domain proteins: AtSUN1(At5g04990), AtSUN2(AT3G10730).  SUN domain proteins are part of the cytoskeletal-nucleoskeletal bridging complexes.  AtSUN1 and AtSUN2 are localized to the nuclear envelope and are present as homomers and heteromers in vivo.Encodes an outer nuclear membrane protein that anchors RanGAP1 to the nuclear envelope.  It interacts with WPP domain interacting-proteins (WIPs).  It is involved in maintaining the elongated nuclear shape of epidermal cells.	SAD1/UNC-84 domain protein 1;(source:Araport11)
AT5G05080.1	protein_coding	ubiquitin-conjugating enzyme 22		ubiquitin-conjugating enzyme 22;(source:Araport11)
AT5G05090.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT5G04890.1	protein_coding	HSP20-like chaperones superfamily protein	Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs).	HSP20-like chaperones superfamily protein;(source:Araport11)
AT5G04820.1	protein_coding	ovate family protein 13		ovate family protein 13;(source:Araport11)
AT5G04830.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein		Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT5G04840.1	protein_coding	bZIP protein		bZIP protein;(source:Araport11)
AT5G04850.1	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT5G04860.1	protein_coding			splicing factor 3A subunit;(source:Araport11)
AT5G04870.1	protein_coding	calcium dependent protein kinase 1	A calcium-dependent protein kinase that can phosphorylate phenylalanine ammonia lyase (PAL), a key enzyme in pathogen defense.	calcium dependent protein kinase 1;(source:Araport11)
AT5G04880.1	pseudogene		pseudogene of ABC transporter family protein	pseudogene of calcium dependent protein kinase 1;(source:Araport11)
AT5G57160.1	protein_coding	DNA ligase IV	Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV.  Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration.  Interacts with the Arabidopsis homologue of XRCC4.	DNA ligase IV;(source:Araport11)
AT5G57170.1	protein_coding	Tautomerase/MIF superfamily protein		Tautomerase/MIF superfamily protein;(source:Araport11)
AT5G57090.1	protein_coding	Auxin efflux carrier family protein	Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation results in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Membrane sterol composition is essential for the acquisition of  PIN2 polarity. Its expression is downregulated at hypoxic conditions. RAP2.12 overexpression inhibits this downregulation.	Auxin efflux carrier family protein;(source:Araport11)
AT5G57180.1	protein_coding	chloroplast import apparatus 2	Transcription regulator responsible for  specific upregulation of the translocon genes  atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.	chloroplast import apparatus 2;(source:Araport11)
AT5G57100.1	protein_coding	Nucleotide/sugar transporter family protein		Nucleotide/sugar transporter family protein;(source:Araport11)
AT5G57190.1	protein_coding	phosphatidylserine decarboxylase 2	Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast.	phosphatidylserine decarboxylase 2;(source:Araport11)
AT5G57110.1	protein_coding	autoinhibited Ca2+ -ATPase, isoform 8	Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.	autoinhibited Ca2+ -ATPase, isoform 8;(source:Araport11)
AT5G57120.1	protein_coding			nucleolar/coiled-body phosphoprotein;(source:Araport11)
AT5G57130.1	protein_coding	Clp amino terminal domain-containing protein	Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance.	Clp amino terminal domain-containing protein;(source:Araport11)
AT5G57140.1	protein_coding	purple acid phosphatase 28		purple acid phosphatase 28;(source:Araport11)
AT5G57150.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G39430.1	protein_coding	Protein of unknown function (DUF1336)		DUF1336 family protein, putative (DUF1336);(source:Araport11)
AT5G39520.1	protein_coding	Protein of unknown function (DUF1997)		hypothetical protein (DUF1997);(source:Araport11)
AT5G39440.1	protein_coding	SNF1-related protein kinase 1.3		SNF1-related protein kinase 1.3;(source:Araport11)
AT5G39530.1	protein_coding	Protein of unknown function (DUF1997)		hypothetical protein (DUF1997);(source:Araport11)
AT5G39450.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G39370.1	protein_coding	Curculin-like (mannose-binding) lectin family protein		Curculin-like (mannose-binding) lectin family protein;(source:Araport11)
AT5G39460.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G39380.1	protein_coding	Plant calmodulin-binding protein-related		Plant calmodulin-binding protein-like protein;(source:Araport11)
AT5G39470.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G39390.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G39480.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G39400.1	protein_coding	Calcium/lipid-binding (CaLB) phosphatase		Calcium/lipid-binding (CaLB) phosphatase;(source:Araport11)
AT5G39490.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G39410.1	protein_coding	Saccharopine dehydrogenase 		Saccharopine dehydrogenase;(source:Araport11)
AT5G39500.1	protein_coding	GNOM-like 1	Encodes GNOM-LIKE1/ERMO1, a member of ARF-GEF family.  Required for endoplasmic reticulum (ER) morphology. The mRNA is cell-to-cell mobile.	GNOM-like 1;(source:Araport11)
AT5G39510.1	protein_coding	Vesicle transport v-SNARE family protein	Encodes a member of SNARE gene family.  Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12. The mRNA is cell-to-cell mobile.	Vesicle transport v-SNARE family protein;(source:Araport11)
AT5G39420.1	protein_coding	CDC2C		CDC2C;(source:Araport11)
AT5G60700.1	protein_coding	glycosyltransferase family protein 2		glycosyltransferase family protein 2;(source:Araport11)
AT5G60620.1	protein_coding	glycerol-3-phosphate acyltransferase 9	Glycerol-3-phosphate acyltransferase localized to the ER. Similar to mammalian cells involved in storage oil formation. ER-localized GPAT enzyme responsible for plant membrane lipid and oil biosynthesis.	glycerol-3-phosphate acyltransferase 9;(source:Araport11)
AT5G60710.1	protein_coding	Zinc finger (C3HC4-type RING finger) family protein		Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT5G60630.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G60720.1	protein_coding	Protein of unknown function, DUF547		electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G60640.1	protein_coding	PDI-like 1-4	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.	PDI-like 1-4;(source:Araport11)
AT5G60730.1	protein_coding	Anion-transporting ATPase	One of 3 GET paralogs in Arabidopsis. GET3c is a mitochondrion localized protein with no obvious role in Tail Anchored (TA) protein insertion.	Anion-transporting ATPase;(source:Araport11)
AT5G60650.1	protein_coding			proline-rich receptor-like kinase;(source:Araport11)
AT5G60740.1	protein_coding	ABC transporter family protein		ABC transporter family protein;(source:Araport11)
AT5G60660.1	protein_coding	plasma membrane intrinsic protein 2;4	A member of the plasma membrane intrinsic protein subfamily PIP2.When expressed in yeast cells can conduct hydrogen peroxide into those cells. Mutants exhibit longer root hairs.	plasma membrane intrinsic protein 2;(source:Araport11)
AT5G60750.1	protein_coding	CAAX amino terminal protease family protein	Encodes a chloroplast endoproteinase, SNOWY COTYLEDON4 (SCO4), required for photosynthetic acclimation to higher light intensities.	CAAX amino terminal protease family protein;(source:Araport11)
AT5G60670.1	protein_coding	Ribosomal protein L11 family protein		Ribosomal protein L11 family protein;(source:Araport11)
AT5G60680.1	protein_coding	Protein of unknown function, DUF584		transcription initiation factor TFIID subunit (Protein of unknown function, DUF584);(source:Araport11)
AT5G60690.1	protein_coding	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein	REVOLUTA regulates meristem initiation at lateral positions. a member of a small homeodomain-leucine zipper family. Has overlapping functions with PHAVOLUTA and PHABULOSA. The mRNA is cell-to-cell mobile.	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein;(source:Araport11)
AT5G17780.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G17700.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT5G17790.1	protein_coding	zinc finger (Ran-binding) family protein	Encodes a zinc-finger motif containing protein that is essential for chloroplast RNA editing. The protein physically interacts with ORRM1 and other components of chloroplast editosomes. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development.  Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.	zinc finger (Ran-binding) family protein;(source:Araport11)
AT5G17710.1	protein_coding	Co-chaperone GrpE family protein	Chloroplast GrpE protein involved in chloroplastic response to heat stress and the correct oligomerization of the photosynthesis-related LHCII complex.	Co-chaperone GrpE family protein;(source:Araport11)
AT5G17800.1	protein_coding	myb domain protein 56	Member of the R2R3 factor gene family that acts as a cell-specific repressor of quiescent center (QC) divisions in the primary root, acting through the BR signaling pathway.   Works with BES1 to regulate QC division in the root.	myb domain protein 56;(source:Araport11)
AT5G17720.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G17810.1	protein_coding	WUSCHEL related homeobox 12	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Together with WOX11, WOX12 is involved in de novo root organogenesis.	WUSCHEL related homeobox 12;(source:Araport11)
AT5G17730.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G17820.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G17740.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G17830.1	protein_coding	Plasma-membrane choline transporter family protein		Plasma-membrane choline transporter family protein;(source:Araport11)
AT5G17840.1	protein_coding	DnaJ/Hsp40 cysteine-rich domain superfamily protein		DnaJ/Hsp40 cysteine-rich domain superfamily protein;(source:Araport11)
AT5G17660.1	protein_coding	tRNA (guanine-N-7) methyltransferase		tRNA (guanine-N-7) methyltransferase;(source:Araport11)
AT5G17750.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G17670.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G17760.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G17680.1	protein_coding	disease resistance protein (TIR-NBS-LRR class), putative		disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G17850.1	protein_coding	Sodium/calcium exchanger family protein	CCX2 is a putative cation/Ca2+ exchange protein. It is located in the endoplasmic reticulum. It plays a role in salt induced calcium signaling. Loss of function results in decreased cytosolic and increased ER Ca2+ concentrations.	Sodium/calcium exchanger family protein;(source:Araport11)
AT5G17770.1	protein_coding	NADH:cytochrome B5 reductase 1	Encodes NADH:cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor.	NADH:cytochrome B5 reductase 1;(source:Araport11)
AT5G17690.1	protein_coding	like heterochromatin protein (LHP1)	Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific  genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic  regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state.	like heterochromatin protein (LHP1);(source:Araport11)
AT5G64770.1	protein_coding		Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor;(source:Araport11)
AT5G64780.1	protein_coding	Uncharacterised conserved protein UCP009193		holocarboxylase synthetase;(source:Araport11)
AT5G64730.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G64740.1	protein_coding	cellulose synthase 6	Encodes a cellulose synthase isomer. CESA6 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA6, along with CESA1 and CESA3 are present in the same plasma membrane complex for cellulose biosynthesis. CESA2 and CESA5 are related to CESA6, having partially redundant roles.  As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening. The mRNA is cell-to-cell mobile.	cellulose synthase 6;(source:Araport11)
AT5G64750.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a putative transcription factor containing an AP2 domain. Is a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family.  Expressed in response to ABA, osmotic stress, sugar stress and drought. Mutants are hypersensitive to these stresses. May be involved in regulation of ABA mediated stress response. The mRNA is cell-to-cell mobile.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G64760.1	protein_coding	regulatory particle non-ATPase subunit 5B	Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a.	regulatory particle non-ATPase subunit 5B;(source:Araport11)
AT5G51170.1	protein_coding			U6 snRNA phosphodiesterase-like protein;(source:Araport11)
AT5G51180.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G51270.1	protein_coding	U-box domain-containing protein kinase family protein		U-box domain-containing protein kinase family protein;(source:Araport11)
AT5G51110.1	protein_coding	Transcriptional coactivator/pterin dehydratase	Encodes a protein involved in Rubisco assembly that also mediates Abscisic acid-dependent stress response. It is a ubiquitination target of the intracellular E3 ligase SDIR1. It selectively regulates the expression of the downstream basic region/leucine zipper motif transcription factor gene ABA-INSENSITIVE5, rather than ABA-RESPONSIVE ELEMENTS BINDING FACTOR3 (ABF3) or ABF4, to regulate ABA-mediated seed germination and the plant salt response.	Transcriptional coactivator/pterin dehydratase;(source:Araport11)
AT5G51190.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G51280.1	protein_coding	DEAD-box protein abstrakt, putative		DEAD-box protein abstrakt;(source:Araport11)
AT5G51200.1	protein_coding	Protein of unknown function (DUF3414)		nuclear pore complex protein (DUF3414);(source:Araport11)
AT5G51290.1	protein_coding	Diacylglycerol kinase family protein	Encodes a ceramide kinase that plays a role in modulating cell death.	Diacylglycerol kinase family protein;(source:Araport11)
AT5G51120.1	protein_coding	polyadenylate-binding protein 1	Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.	polyadenylate-binding protein 1;(source:Araport11)
AT5G51210.1	protein_coding	oleosin3	Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.	oleosin3;(source:Araport11)
AT5G51130.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G51300.1	protein_coding	splicing factor-related	Encodes a nuclear localized splicing factor homolog that is involved in alternative splicing of some mRNAs.	splicing factor-like protein;(source:Araport11)
AT5G51220.1	protein_coding	ubiquinol-cytochrome C chaperone family protein		ubiquinol-cytochrome C chaperone family protein;(source:Araport11)
AT5G51140.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT5G51310.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Mutants exhibit longer root hairs under phosphate-deficient conditions.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G51230.1	protein_coding	VEFS-Box of polycomb protein	Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.	VEFS-Box of polycomb protein;(source:Araport11)
AT5G51150.1	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein		Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT5G51160.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G51250.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G51260.1	protein_coding	HAD superfamily, subfamily IIIB acid phosphatase 		HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT5G22330.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G22340.1	protein_coding			NF-kappa-B inhibitor-like protein;(source:Araport11)
AT5G22430.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G22350.1	protein_coding	Protein of unknown function (DUF1022)		fission ELM1-like protein (DUF1022);(source:Araport11)
AT5G22440.1	protein_coding	Ribosomal protein L1p/L10e family		Ribosomal protein L1p/L10e family;(source:Araport11)
AT5G22360.1	protein_coding	vesicle-associated membrane protein 714	Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.	vesicle-associated membrane protein 714;(source:Araport11)
AT5G22450.1	protein_coding			spectrin beta chain, brain;(source:Araport11)
AT5G22370.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes QQT1.  Required for early embryo development.  qqt1 mutant lines are embryo-defective.  Participates in the organization of microtubules during cell division.  Interacts with QQT2 (encoded by AT4G21800).	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G22460.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G22380.1	protein_coding	NAC domain containing protein 90		NAC domain containing protein 90;(source:Araport11)
AT5G22390.1	protein_coding	Protein of unknown function (DUF3049)		FANTASTIC four-like protein (DUF3049);(source:Araport11)
AT5G22310.1	protein_coding			trichohyalin-like protein;(source:Araport11)
AT5G22400.1	protein_coding	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain		Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein;(source:Araport11)
AT5G22320.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G22410.1	protein_coding	root hair specific 18		root hair specific 18;(source:Araport11)
AT5G22420.1	protein_coding	fatty acid reductase 7		fatty acid reductase 7;(source:Araport11)
AT5G43420.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G43430.1	protein_coding	electron transfer flavoprotein beta	Encodes the electron transfer flavoprotein ETF beta, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF alpha is At1g50940) in Arabidopsis.  Mutations of the ETF beta gene result in accelerated senescence and early death compared to wild-type during extended darkness.  Also involved in the catabolism of leucine and chlorophyll degradation pathway activated during darkness-induced carbohydrate deprivation.	electron transfer flavoprotein beta;(source:Araport11)
AT5G43340.1	protein_coding	phosphate transporter 1;6	Encodes Pht1;6, a member of the Pht1 family of phosphate transporters which include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341).	phosphate transporter 1;(source:Araport11)
AT5G43440.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to ACC oxidase	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G43350.1	protein_coding	phosphate transporter 1;1	Encodes an inorganic phosphate transporter Pht1;1.  Mutants display enhanced arsenic accumulation.  Members of the Pht1 family of phosphate transporters include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341).	phosphate transporter 1;(source:Araport11)
AT5G43450.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to ACC oxidase	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G43360.1	protein_coding	phosphate transporter 1;3	Encodes Pht1;3, a member of the Pht1 family of phosphate transporters which include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341).	phosphate transporter 1;(source:Araport11)
AT5G43460.1	protein_coding	HR-like lesion-inducing protein-related		HR-like lesion-inducing protein-like protein;(source:Araport11)
AT5G43370.1	protein_coding	phosphate transporter 2	Encodes a phosphate transporter Pht1;2.  Members of the Pht1 family of phosphate transporters include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341) The mRNA is cell-to-cell mobile.	phosphate transporter 2;(source:Araport11)
AT5G43470.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family	Confers resistance to Peronospora parasitica. In arabidopsis ecotype Dijon-17, HRT-mediated signaling is dependent on light for the induction of  hypersensitive response and resistance to turnip crinkle virus.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G43390.1	protein_coding	Uncharacterised conserved protein UCP015417,  vWA		plant/protein;(source:Araport11)
AT5G43480.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G43400.1	protein_coding	Uncharacterised conserved protein UCP015417,  vWA		plant/protein;(source:Araport11)
AT5G43490.1	protein_coding			myb-like protein X;(source:Araport11)
AT5G43410.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. Expression of ERF96 is induced by pathogens, JA and ethylene and over expression leads to increased resistance to resistance to necrotrophic pathogens. It is a nuclear localized, transcriptional activator that binds to GCC elements that is involved in positive regulation of ABA responses.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G43500.1	protein_coding	actin-related protein 9	encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.	actin-related protein 9;(source:Araport11)
AT5G55880.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G55860.1	protein_coding	Plant protein of unknown function (DUF827)	WEB1/PMI2 related protein involved in mecahnotransduction.TREPH1 is phosphorylated at position S625 in response to touch, and this is required for mechanosensitive growth response.	weak chloroplast movement under blue light protein (DUF827);(source:Araport11)
AT5G55870.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G38210.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT5G38220.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G38230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 8.5e-53 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT5G38150.1	protein_coding	Plant protein of unknown function (DUF827)	Involved in chloroplast avoidance movement under high-light intensities	PLASTID MOVEMENT IMPAIRED protein (DUF827);(source:Araport11)
AT5G38240.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT5G38160.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G38250.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT5G38170.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G38260.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G38180.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G38270.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G38190.1	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT5G38280.1	protein_coding	PR5-like receptor kinase	putative receptor serine/threonine kinase PR5K (PR5K) mRNA,  PR5-like receptor kinase	PR5-like receptor kinase;(source:Araport11)
AT5G38200.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein		Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT5G24670.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein	A protein coding gene with unknown function.  The 5?UTR of this gene overlaps with a RNA coding gene TER2.  TER2 (GenBank accession no. HQ401285) encodes a putative template sequence corresponding to 1.5 copies of the Arabidopsis telomere repeat (PNAS 2011, 108:73-78). Natural epiallele in Nok-1, transmission of the epiallele over generations depends only on the selfreinforcing loop between CHROMOMETHYLASE 3 and KRYPTONITE, involving DNA methylated in the CHG context and histone H3 lysine 9 methylation.	Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT5G24680.1	protein_coding	Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2		Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2;(source:Araport11)
AT5G24690.1	protein_coding	Protein of unknown function (DUF3411)		plant/protein, putative (DUF3411);(source:Araport11)
AT5G24710.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	WD40/YVTN repeat protein.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G52950.1	protein_coding			LIM domain protein;(source:Araport11)
AT5G52870.1	protein_coding		Encodes a member of the MAKR (MEMBRANE-ASSOCIATED KINASE REGULATOR)  gene family. MAKRs have putative kinase interacting motifs and membrane localization signals. Known members include: AT5G26230 (MAKR1), AT1G64080 (MAKR2), AT2G37380 (MAKR3), AT2G39370 (MAKR4), AT5G52870 (MAKR5) and AT5G52900 (MAKR6).	membrane-associated kinase regulator;(source:Araport11)
AT5G52880.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G52890.1	protein_coding	AT hook motif-containing protein		AT hook motif-containing protein;(source:Araport11)
AT5G52900.1	protein_coding		Encodes a member of the MAKR (MEMBRANE-ASSOCIATED KINASE REGULATOR)  gene family. MAKRs have putative kinase interacting motifs and membrane localization signals. Known members include: AT5G26230 (MAKR1), AT1G64080 (MAKR2), AT2G37380 (MAKR3), AT2G39370 (MAKR4), AT5G52870 (MAKR5) and AT5G52900 (MAKR6).	membrane-associated kinase regulator;(source:Araport11)
AT5G52910.1	protein_coding	timeless family protein	homolog of Drosophila timeless	timeless family protein;(source:Araport11)
AT5G52830.1	protein_coding	WRKY DNA-binding protein 27	Encodes a WRKY transcription factor WRKY27.  Mutation in Arabidopsis WRKY27 results in delayed symptom development in response to the bacterial wilt pathogen Ralstonia solanacearum.	WRKY DNA-binding protein 27;(source:Araport11)
AT5G52920.1	protein_coding	plastidic pyruvate kinase beta subunit 1	encodes a dominant chloroplast pyruvate kinase beta subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds. The mutant plant has wrinkled seeds, with a 50-70% reduction in seed fatty acid content. The mRNA is cell-to-cell mobile.	plastidic pyruvate kinase beta subunit 1;(source:Araport11)
AT5G52840.1	protein_coding	NADH-ubiquinone oxidoreductase-related		NADH-ubiquinone oxidoreductase-like protein;(source:Araport11)
AT5G52930.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT5G52850.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G52940.1	protein_coding	Protein of unknown function (DUF295)	DUF295 domain protein.	hypothetical protein (DUF295);(source:Araport11)
AT5G52860.1	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT5G12150.1	protein_coding	Rho GTPase activation protein (RhoGAP) with PH domain	Encodes a protein with similarity to REN1, a Rho GTPase activating protein.It is cytoplasmic and plasma membrane associated in interphase, but during mitosis localizes to the CDZ/CDS in a POK-dependent manner.	Rho GTPase activation protein (RhoGAP) with PH domain-containing protein;(source:Araport11)
AT5G12250.1	protein_coding	beta-6 tubulin	Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.	beta-6 tubulin;(source:Araport11)
AT5G12260.1	protein_coding			transferring glycosyl group transferase;(source:Araport11)
AT5G12090.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G12180.1	protein_coding	calcium-dependent protein kinase 17	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 17;(source:Araport11)
AT5G12100.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT5G12190.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G12110.1	protein_coding	Glutathione S-transferase, C-terminal-like;Translation elongation  factor EF1B/ribosomal protein S6		elongation factor 1-beta 1;(source:Araport11)
AT5G12120.1	protein_coding	Ubiquitin-associated/translation elongation factor EF1B protein		Ubiquitin-associated/translation elongation factor EF1B protein;(source:Araport11)
AT5G12200.1	protein_coding	pyrimidine 2	Encodes a protein with dihydropyrimidine amidohydrolase activity. It localizes to the secretory system and plays a role in uracil metabolism.	pyrimidine 2;(source:Araport11)
AT5G12130.1	protein_coding	integral membrane TerC family protein		integral membrane TerC family protein;(source:Araport11)
AT5G12210.1	protein_coding	RAB geranylgeranyl transferase beta subunit 1		RAB geranylgeranyl transferase beta subunit 1;(source:Araport11)
AT5G12140.1	protein_coding	cystatin-1	Encodes a cystatin.	cystatin-1;(source:Araport11)
AT5G12220.1	protein_coding	las1-like family protein		las1-like family protein;(source:Araport11)
AT5G12230.1	protein_coding			mediator of RNA polymerase II transcription subunit 19a-like protein;(source:Araport11)
AT5G12240.1	protein_coding			octanoyltransferase;(source:Araport11)
AT5G13770.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT5G13780.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Encodes the catalytic subunit of a N-terminal acetyltransferase.	Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT5G13790.1	protein_coding	AGAMOUS-like 15	AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation. Role in embryogenesis and gibberellic acid  catabolism. Targets B3 domain transcription factors that are key regulators of embryogenesis.AGL15 binds the HAE promoter in floral receptacles and represses HAE expression. AGL15 is phosphorylated in a MKK4/5 dependent manner in floral receptacles. Serines 231 and 257 are phosphorylated in floral receptacles. AGL15 also directly regulates the expression of the peroxidase PRX17, linking it to lignified tissue expression.	AGAMOUS-like 15;(source:Araport11)
AT5G39100.1	protein_coding	germin-like protein 6	germin-like protein (GLP6)	germin-like protein 6;(source:Araport11)
AT5G39020.1	protein_coding	Malectin/receptor-like protein kinase family protein	Involved in growth adaptation upon exposure to metal ions. Contributes together with the other MDS genes to the complex network of CrRLK1Ls that positively and negatively affect growth.	Malectin/receptor-like protein kinase family protein;(source:Araport11)
AT5G39110.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G39030.1	protein_coding	Protein kinase superfamily protein	Involved in growth adaptation upon exposure to metal ions. Contributes together with the other MDS genes to the complex network of CrRLK1Ls that positively and negatively affect growth.	Protein kinase superfamily protein;(source:Araport11)
AT5G39120.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G39040.1	protein_coding	transporter associated with antigen processing protein 2	Encodes a member of TAP subfamily of ABC transporters that is located in the vacuole.  Mutants are hypersensitive to aluminum and the gene product may be important for intracellular movement of some substrate, possibly chelated Al, as part of a mechanism of aluminum sequestration.	transporter associated with antigen processing protein 2;(source:Araport11)
AT5G39130.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G39050.1	protein_coding	HXXXD-type acyl-transferase family protein	Encodes a malonyltransferase that may play a role in phenolic xenobiotic detoxification.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G39140.1	protein_coding			myb-like protein Q;(source:Araport11)
AT5G39060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 7.3e-252 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G39150.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G39070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 3.9e-50 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G39080.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G39090.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G35730.1	protein_coding	EXS (ERD1/XPR1/SYG1) family protein		EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT5G35740.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT5G35750.1	protein_coding	histidine kinase 2	Encodes histidine kinase AHK2.	histidine kinase 2;(source:Araport11)
AT5G35770.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	A recessive mutation in the Arabidopsis STERILE APETALA (SAP) causes severe aberrations in inflorescence  and flower and ovule development.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G35760.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT5G35690.1	protein_coding		WT-like growth phenotype mutants of WSS1B do not display hypersensitivities after treatment with DNA-Protein crosslink inducing agents like camptothecin or cis-platin.	zinc metalloproteinase-like protein;(source:Araport11)
AT5G35700.1	protein_coding	fimbrin-like protein 2	Encodes FIMBRIN5, an actin bundling factor required for pollen germination and pollen tube growth. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	fimbrin-like protein 2;(source:Araport11)
AT5G35710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.5e-48 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT5G38400.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G38470.1	protein_coding	Rad23 UV excision repair protein family	Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.	Rad23 UV excision repair protein family;(source:Araport11)
AT5G38380.1	protein_coding			zinc transporter;(source:Araport11)
AT5G38480.1	protein_coding	general regulatory factor 3	general regulatory factor, a 14-3-3 gene	general regulatory factor 3;(source:Araport11)
AT5G38440.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G38390.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G38430.1	protein_coding	Ribulose bisphosphate carboxylase (small chain) family protein	Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410).	Ribulose bisphosphate carboxylase (small chain) family protein;(source:Araport11)
AT5G38450.1	protein_coding	cytochrome P450, family 735, subfamily A, polypeptide 1		cytochrome P450, family 735, subfamily A, polypeptide 1;(source:Araport11)
AT5G38420.1	protein_coding	Ribulose bisphosphate carboxylase (small chain) family protein	Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410).	Ribulose bisphosphate carboxylase (small chain) family protein;(source:Araport11)
AT5G38410.1	protein_coding	Ribulose bisphosphate carboxylase (small chain) family protein	Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410). Functions to yield sufficient Rubisco content for leaf photosynthetic capacity.	Ribulose bisphosphate carboxylase (small chain) family protein;(source:Araport11)
AT5G38460.1	protein_coding	ALG6, ALG8 glycosyltransferase family		ALG6, ALG8 glycosyltransferase family;(source:Araport11)
AT5G50320.1	protein_coding	radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein	A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. Two lines with RNAi constructs directed against HAG3 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation.	radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein;(source:Araport11)
AT5G50410.1	protein_coding			ribonucleoside-diphosphate reductase subunit beta;(source:Araport11)
AT5G50330.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G50420.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT5G50340.1	protein_coding	ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases		DNA repair protein RadA-like protein;(source:Araport11)
AT5G50430.1	protein_coding	ubiquitin-conjugating enzyme 33		ubiquitin-conjugating enzyme 33;(source:Araport11)
AT5G50350.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G50440.1	protein_coding	membrin 12	Member of Membrin Gene Family. Encodes a Golgi-localized SNARE protein MEMB12. MEMB12 is a target of miR393b-mediated gene silencing during Pseudomonas syringae pv. Tomato infection. Loss of function of MEMB12 leads to increased exocytosis of an antimicrobial pathogenesis-related protein, PR1.	membrin 12;(source:Araport11)
AT5G50360.1	protein_coding		ABA&#8208;induced transcription repressor that acts as feedback regulator in ABA signalling.	von willebrand factor A domain protein;(source:Araport11)
AT5G50450.1	protein_coding	HCP-like superfamily protein with MYND-type zinc finger		HCP-like superfamily protein with MYND-type zinc finger;(source:Araport11)
AT5G50370.1	protein_coding	Adenylate kinase family protein		Adenylate kinase family protein;(source:Araport11)
AT5G50380.1	protein_coding	exocyst subunit exo70 family protein F1	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein F1;(source:Araport11)
AT5G50390.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT5G50400.1	protein_coding	purple acid phosphatase 27		purple acid phosphatase 27;(source:Araport11)
AT5G56290.1	protein_coding	peroxin 5	Encodes the peroxisomal targeting signal type 1 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS1 consensus sequence (tripeptide SKL or a conserved variant) at the extreme C terminus.  The protein has several domains, including C-terminal tetratricopeptide repeat motifs which act in binding the C-terminal "SKL" targeting signal.  The mechanism of transport has been worked out in other organisms:  The receptor recognizes and binds cytosolic PTS1-containing proteins.  The PEX5-PTS1 complex binds a PEX14/PEX13 receptor complex at the peroxisome membrane and is translocated into the peroxisome matrix in a process dependent on PEX2,PEX10, and PEX12.  In the peroxisome matrix, PEX5 releases its cargo and is recycled to the cytosol in a process dependent on PEX1, PEX4, PEX6 and PEX22.  It is also involved, in conjunction with PEX7, in PTS1- and PTS2-dependent peroxisomal protein import.  RNAi experiments suggest that PEX5 is necessary for the maintenance of both glyoxysomal and leaf peroxisomal functions.	peroxin 5;(source:Araport11)
AT5G64880.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G64810.1	protein_coding	WRKY DNA-binding protein 51	member of WRKY Transcription Factor; Group II-c.  Involved in jasmonic acid inducible defense responses.	WRKY DNA-binding protein 51;(source:Araport11)
AT5G64890.1	protein_coding	elicitor peptide 2 precursor		elicitor peptide 2 precursor;(source:Araport11)
AT5G64980.1	protein_coding			transcription factor;(source:Araport11)
AT5G64820.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G64900.1	protein_coding	precursor of peptide 1	Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.	precursor of peptide 1;(source:Araport11)
AT5G64990.1	protein_coding	RAB GTPase homolog H1A		RAB GTPase homolog H1A;(source:Araport11)
AT5G64910.1	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT5G65000.1	protein_coding	Nucleotide-sugar transporter family protein	Encodes an ER-localized facilitator of UDP-N-acetylglucosamine (UDP-GlcNAc) and UDP-N-acetylgalactosamine (UDP-GalNAc) transport.  It also regulates the cytokinin signal in meristematic cells through modulating activity of cytokinin oxidases/dehydrogenases. Finally, it is an important part of the ER quality control system, which determines the fate of aberrant proteins in the secretory pathway.	Nucleotide-sugar transporter family protein;(source:Araport11)
AT5G64830.1	protein_coding	programmed cell death 2 C-terminal domain-containing protein		programmed cell death 2 C-terminal domain-containing protein;(source:Araport11)
AT5G64920.1	protein_coding	COP1-interacting protein 8	Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro.  It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5.	COP1-interacting protein 8;(source:Araport11)
AT5G64840.1	protein_coding	general control non-repressible 5	member of GCN subfamily	general control non-repressible 5;(source:Araport11)
AT5G65010.1	protein_coding	asparagine synthetase 2	Encodes asparagine synthetase (ASN2).	asparagine synthetase 2;(source:Araport11)
AT5G64930.1	protein_coding	CPR5 protein, putative	Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR).	CPR5 protein;(source:Araport11)
AT5G64850.1	protein_coding			sorbin/SH3 domain protein;(source:Araport11)
AT5G65020.1	protein_coding	annexin 2	Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane.  They may be involved in the Golgi-mediated secretion of polysaccharides.	annexin 2;(source:Araport11)
AT5G64860.1	protein_coding	disproportionating enzyme	Encodes a maltotriose-metabolizing enzyme with chloroplastic &#945;-1,4-glucanotransferase activity. Mutant has altered starch degradation.	disproportionating enzyme;(source:Araport11)
AT5G64940.1	protein_coding	ABC2 homolog 13	ABC1K8 is a member of an atypical protein kinase family that is induced by heavy metals. Loss of function mutations affect the metabolic profile of chloroplast lipids. It appears to function along with ABC1K7 in mediating lipid membrane changes in response to stress. The mRNA is cell-to-cell mobile.	ABC2 homolog 13;(source:Araport11)
AT5G65030.1	protein_coding			nitric oxide synthase-interacting protein;(source:Araport11)
AT5G64870.1	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT5G64950.1	protein_coding	Mitochondrial transcription termination factor family protein	mTERF family protein which functions in the regulation of mtDNA transcription.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT5G65040.1	protein_coding	Protein of unknown function (DUF581)		senescence-associated family protein (DUF581);(source:Araport11)
AT5G64960.1	protein_coding	cyclin dependent kinase group C2	Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes.  Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components.	cyclin dependent kinase group C2;(source:Araport11)
AT5G65050.1	protein_coding	AGAMOUS-like 31	Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time.  Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.	AGAMOUS-like 31;(source:Araport11)
AT5G64970.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G07800.1	protein_coding	Flavin-binding monooxygenase family protein		Flavin-binding monooxygenase family protein;(source:Araport11)
AT5G41320.1	protein_coding			stress response NST1-like protein;(source:Araport11)
AT5G41410.1	protein_coding	POX (plant homeobox) family protein	Homeodomain protein required for ovule identity.Loss of function mutations show homeotic conversion of integuments to carpels.Forms heterodimers with STM and KNAT1. Interacts with AG-SEP heterodimers is thought to restrict WUS expression. BEL interacts with MADS box dimers composed of SEP1(or SEP3) and AG, SHP1, SHP2 and STK. The interaction of BEL1 with AG-SEP3 is required for proper integument development and specification of integument identity.	POX (plant homeobox) family protein;(source:Araport11)
AT5G41330.1	protein_coding	BTB/POZ domain with WD40/YVTN repeat-like protein		BTB/POZ domain with WD40/YVTN repeat-like protein;(source:Araport11)
AT5G41430.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G41340.1	protein_coding	ubiquitin conjugating enzyme 4	Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated.	ubiquitin conjugating enzyme 4;(source:Araport11)
AT5G41440.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G41350.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G41450.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G41360.1	protein_coding	homolog of Xeroderma pigmentosum complementation group B 2	Encodes XPB2, a DNA repair protein and transcription factor.  Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies.	homolog of Xeroderma pigmentosum complementation group B 2;(source:Araport11)
AT5G41460.1	protein_coding	Protein of unknown function (DUF604)		transferring glycosyl group transferase (DUF604);(source:Araport11)
AT5G41370.1	protein_coding	homolog of xeroderma pigmentosum complementation group B 1	Encodes XPB1, a DNA repair protein and transcription factor.  Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies. The mRNA is cell-to-cell mobile.	DNA repair helicase XPB1-like protein;(source:Araport11)
AT5G41470.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein		Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT5G41380.1	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT5G41480.1	protein_coding	Folylpolyglutamate synthetase family protein	Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis.	Folylpolyglutamate synthetase family protein;(source:Araport11)
AT5G41390.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT5G41490.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G41400.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G39940.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT5G39860.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding family protein	Encodes PRE1 (PACLOBUTRAZOL RESISTANCE1).  PRE1 and IBH1 form a pair of antagonistic HLH/bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation.  BNQ1 is directly and negatively regulated by AP3 and PI in petals.Required for appropriate regulation of flowering time.	basic helix-loop-helix (bHLH) DNA-binding family protein;(source:Araport11)
AT5G39950.1	protein_coding	thioredoxin 2	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.	thioredoxin 2;(source:Araport11)
AT5G39870.1	protein_coding	Protein of unknown function (DUF1216)		hypothetical protein (DUF1216);(source:Araport11)
AT5G39960.1	protein_coding	GTP binding;GTP binding		GTP-binding protein;(source:Araport11)
AT5G39880.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G39970.1	protein_coding	catalytics		catalytics;(source:Araport11)
AT5G39890.1	protein_coding	Protein of unknown function (DUF1637)		2-aminoethanethiol dioxygenase, putative (DUF1637);(source:Araport11)
AT5G39980.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	PDM3 belongs to the P subfamily of PPR proteins.Mutants have defective chloroplasts and accumulates unspliced plastid RNAs suggesting a role in RNA splicing.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G39900.1	protein_coding	Small GTP-binding protein		Small GTP-binding protein;(source:Araport11)
AT5G39990.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	Encodes GlcAT14A, a beta-glucuronosyltransferase involved in the biosynthesis of type II arabinogalactan. The protein was localized to the Golgi apparatus when transiently expressed in Nicotiana benthamiana. Plays a role in cell elongation during seedling growth.	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G39910.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G40000.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G39920.1	protein_coding			pre-mRNA cleavage complex II protein;(source:Araport11)
AT5G40010.1	protein_coding	AAA-ATPase 1	Encodes a mitochondrial ATPase involved in seed and silique development.	AAA-ATPase 1;(source:Araport11)
AT5G39930.1	protein_coding	CLP1-similar protein 5	Encodes a protein with similarity to the CLP1 polyadenylation factor.	CLP1-similar protein 5;(source:Araport11)
AT5G40020.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT5G09810.1	protein_coding	actin 7	Member of Actin gene family.Mutants are defective in germination and root growth. The mRNA is cell-to-cell mobile.	actin 7;(source:Araport11)
AT5G09820.1	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein	Encodes fibrillin 5 (FBN5). Located in chloroplast stroma. Essential for plastoquinone-9 biosynthesis. Stimulates enzymatic activity of solanesyl diphosphate synthases (SPS) 1 and 2 through binding to solanesyl moiety. Two splicing variants, named FBN5-A shorter one and FBN5-B longer one. FBN5-B is the protein detected in chloroplast stroma.	Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT5G09900.1	protein_coding	26S proteasome regulatory subunit, putative (RPN5)	Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects.	26S proteasome regulatory subunit, putative (RPN5);(source:Araport11)
AT5G09830.1	protein_coding	BolA-like family protein	Encodes a cytosolic BolA protein. Plays a repressive role in the tolerance against excess iron and methyl viologen-induced oxidative stress.	BolA-like family protein;(source:Araport11)
AT5G09910.1	protein_coding	Ras-related small GTP-binding family protein		Ras-related small GTP-binding family protein;(source:Araport11)
AT5G10000.1	protein_coding	ferredoxin 4		ferredoxin 4;(source:Araport11)
AT5G09920.1	protein_coding	RNA polymerase II, Rpb4, core protein	Non-catalytic subunit specific to DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB4)	RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT5G09840.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT5G09930.1	protein_coding	ABC transporter family protein	member of GCN subfamily	ABC transporter family protein;(source:Araport11)
AT5G09850.1	protein_coding	Transcription elongation factor (TFIIS) family protein		Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT5G09940.1	protein_coding	Protein of unknown function (DUF1635)		hypothetical protein (DUF1635);(source:Araport11)
AT5G09860.1	protein_coding	nuclear matrix protein-related	Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. One of the pathways affected by THO1 is the miRNA399-PHO2 pathway that regulates root APase activity.	nuclear matrix protein-like protein;(source:Araport11)
AT5G09950.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a DYW-class PPR protein required   for RNA editing at four sites in mitochondria of A. thaliana.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G09870.1	protein_coding	cellulose synthase 5	Encodes a cellulose synthase CESA5 that produces seed mucilage cellulose.Mutants are defective in seed coat mucilage.Involved in the regulation of mucilage composition and/or mucilage synthesis.	cellulose synthase 5;(source:Araport11)
AT5G09880.1	protein_coding	Splicing factor, CC1-like		Splicing factor, CC1-like protein;(source:Araport11)
AT5G09960.1	protein_coding			sorbin/SH3 domain protein;(source:Araport11)
AT5G09890.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT5G09970.1	protein_coding	cytochrome P450, family 78, subfamily A, polypeptide 7	member of CYP78A	cytochrome P450, family 78, subfamily A, polypeptide 7;(source:Araport11)
AT5G09980.1	protein_coding	elicitor peptide 4 precursor		elicitor peptide 4 precursor;(source:Araport11)
AT5G09990.1	protein_coding	elicitor peptide 5 precursor		elicitor peptide 5 precursor;(source:Araport11)
AT5G23120.1	protein_coding	photosystem II stability/assembly factor, chloroplast (HCF136)	encodes a stability and/or assembly factor of photosystem II The mRNA is cell-to-cell mobile.	photosystem II stability/assembly factor, chloroplast (HCF136);(source:Araport11)
AT5G23040.1	protein_coding	Protein of unknown function (DUF3353)	Encodes a protein that enables protochlorophillide's binding to pPORA's transit sequence, regulating pPORA's translocation into the plastid stroma, and blocking movement of the translocating polypeptide chain back into the cytosol. Causes Bax mediated lethality in yeast by generating reactive oxygen species and this effect is suppressed by AtBI-1.	cell growth defect factor-like protein (DUF3353);(source:Araport11)
AT5G23130.1	protein_coding	Peptidoglycan-binding LysM domain-containing protein		Peptidoglycan-binding LysM domain-containing protein;(source:Araport11)
AT5G23050.1	protein_coding	acyl-activating enzyme 17		acyl-activating enzyme 17;(source:Araport11)
AT5G23140.1	protein_coding	nuclear-encoded CLP protease P7	One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).	nuclear-encoded CLP protease P7;(source:Araport11)
AT5G23060.1	protein_coding	calcium sensing receptor	Encodes a  chloroplast-localized protein that modulates cytoplasmic Ca2+ concentration and is crucial for proper stomatal regulation in response to elevations of external Ca2+. Phosphorylation of this protein is dependent on calcium.	calcium sensing receptor;(source:Araport11)
AT5G23150.1	protein_coding	Tudor/PWWP/MBT domain-containing protein	Putative transcription factor. Member of the floral homeotic AGAMOUS pathway.Mutations in HUA enhance the phenotype of mild ag-4 allele. Single hua mutants are early flowering and have  reduced levels of FLC mRNA. Other MADS box flowering time genes such as FLM and MAF2 also appear to be regulated by HUA2. HUA2 normally activates FLC expression and enhances  AG function. HUA and HUA-LIKE (HULK) genes act redundantly to regulate a subset of essential genes, with some (or all) family members also having specific functions. The mRNA is cell-to-cell mobile.	Tudor/PWWP/MBT domain-containing protein;(source:Araport11)
AT5G23070.1	protein_coding	Thymidine kinase	Encodes a thymidine kinase that salvages DNA precursors. The pyrimidine salvage pathway is crucial for chloroplast development and genome replication, as well as for the maintenance of its integrity.	Thymidine kinase;(source:Araport11)
AT5G23080.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein	Interacts with TATA-box binding protein 2. Contains domains with strong similarity to G-patch and  SWAP domains, characteristic of RNA binding and processing proteins. Colocalizes with the splicing regulator SRp34 to subnuclear particles. It is an important component of miRNA and siRNA biogenesis. Mutants display developmental defects, including reduced plant height, polycotyly, and reduced vascularization. Strong genetic interaction between TGH and AMP1.	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G23090.1	protein_coding	nuclear factor Y, subunit B13		nuclear factor Y, subunit B13;(source:Araport11)
AT5G23100.1	protein_coding	Protein of unknown function, DUF617		MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT5G23020.1	protein_coding	2-isopropylmalate synthase 2	methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2).  encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis. The mRNA is cell-to-cell mobile.	2-isopropylmalate synthase 2;(source:Araport11)
AT5G23110.1	protein_coding	Zinc finger, C3HC4 type (RING finger) family protein		Zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT5G23030.1	protein_coding	tetraspanin12	Member of TETRASPANIN family	tetraspanin12;(source:Araport11)
AT5G55950.1	protein_coding	Nucleotide/sugar transporter family protein		Nucleotide/sugar transporter family protein;(source:Araport11)
AT5G55960.1	protein_coding			transmembrane protein C9orf5 protein;(source:Araport11)
AT5G55930.1	protein_coding	oligopeptide transporter 1	oligopeptide transporter	oligopeptide transporter 1;(source:Araport11)
AT5G55940.1	protein_coding	Uncharacterised protein family (UPF0172)		Uncharacterized protein family (UPF0172);(source:Araport11)
AT5G53470.1	protein_coding	acyl-CoA binding protein 1	Encodes an acyl-CoA binding protein that is localized to vesicles,and plasma membrane especially in epidermal cells of heart, torpedo and cotyledon stage embryos, cell wall of the seed coat. Northern blot analysis showed that the 1.4 kb ACBP1 mRNA was expressed in silique, root, stem, leaf and flower.	acyl-CoA binding protein 1;(source:Araport11)
AT5G53420.1	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT5G53430.1	protein_coding	SET domain group 29	Homology Subgroup III; Orthology Group 2 - A putative histone methyltransferase (predicted to methylate H3K4) related to the Drosophila trithorax group proteins TRX and TRR and the yeast gene SET1. A plant line expressing an RNAi construct directed against  this gene has reduced agrobacterium-mediated tumor formation.	SET domain group 29;(source:Araport11)
AT5G53440.1	protein_coding			LOW protein: zinc finger CCCH domain protein;(source:Araport11)
AT5G53450.1	protein_coding	OBP3-responsive gene 1		OBP3-responsive protein 1;(source:Araport11)
AT5G53460.1	protein_coding	NADH-dependent glutamate synthase 1	NADH-dependent glutamate synthase The mRNA is cell-to-cell mobile.	NADH-dependent glutamate synthase 1;(source:Araport11)
AT5G46720.1	protein_coding	AIG2-like (avirulence induced gene) family protein		AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT5G46650.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G46730.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT5G46820.1	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal proteinase-like protein, putative (DUF239);(source:Araport11)
AT5G46660.1	protein_coding	protein kinase C-like zinc finger protein		protein kinase C-like zinc finger protein;(source:Araport11)
AT5G46740.1	protein_coding	ubiquitin-specific protease 21	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 21;(source:Araport11)
AT5G46670.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G46750.1	protein_coding	ARF-GAP domain 9	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. The mRNA is cell-to-cell mobile.	ARF-GAP domain 9;(source:Araport11)
AT5G46680.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT5G46760.1	protein_coding	Basic helix-loop-helix (bHLH) DNA-binding family protein	MYC3 is a JAZ-interacting transcription factor that act together with MYC2 and MYC4 to activate JA-responses. The mRNA is cell-to-cell mobile.	Basic helix-loop-helix (bHLH) DNA-binding family protein;(source:Araport11)
AT5G46690.1	protein_coding	beta HLH protein 71		beta HLH protein 71;(source:Araport11)
AT5G46770.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G46700.1	protein_coding	Tetraspanin family protein	Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis.	Tetraspanin family protein;(source:Araport11)
AT5G46780.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT5G46710.1	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT5G46790.1	protein_coding	PYR1-like 1	Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2. Negative regulation of ABA response as a result of phosphorylation of S136 and S182 sites by AEL1/3/4.	PYR1-like 1;(source:Araport11)
AT5G46800.1	protein_coding	Mitochondrial substrate carrier family protein	Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein	Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G46810.1	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal proteinase-like protein, putative (DUF239);(source:Araport11)
AT5G23960.1	protein_coding	terpene synthase 21	Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend.  Strongly expressed in the stigma.	terpene synthase 21;(source:Araport11)
AT5G24050.1	protein_coding	Domain of unknown function (DUF313) 		plant-specific B3-DNA-binding domain protein (DUF313);(source:Araport11)
AT5G23970.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G24060.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G23980.1	protein_coding	ferric reduction oxidase 4	Encodes a ferric chelate reductase that is expressed at low levels in roots,shoots and cotyledons, but not flowers. Its transcription is regulated by FIT1.	ferric reduction oxidase 4;(source:Araport11)
AT5G24070.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G23990.1	protein_coding	ferric reduction oxidase 5	Encodes a ferric chelate reductase that is expressed at low levels in roots,shoots and flowers, but not cotyledons.	ferric reduction oxidase 5;(source:Araport11)
AT5G24080.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G24000.1	protein_coding	Protein of unknown function (DUF819)		keratin-associated protein (DUF819);(source:Araport11)
AT5G24090.1	protein_coding	chitinase A	Chitinase A (class III) expressed exclusively under environmental stress conditions. Shown be a plant lysozyme involved in plant immunity.	chitinase A;(source:Araport11)
AT5G24010.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G24100.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G24020.1	protein_coding	septum site-determining protein (MIND)	Encodes a Ca2+ dependent ATPase required for correct positioning of the chloroplast division apparatus.  Its ATPase activity is stimulated by AtMinE1, a topological specificity factor.	septum site-determining protein (MIND);(source:Araport11)
AT5G24030.1	protein_coding	SLAC1 homologue 3	Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.	SLAC1 homologue 3;(source:Araport11)
AT5G24040.1	protein_coding	Protein of unknown function (DUF295)		F-box SKIP23-like protein (DUF295);(source:Araport11)
AT5G58650.1	protein_coding	plant peptide containing sulfated tyrosine 1	Encodes PSY1, an18-aa tyrosine-sulfated glycopeptide that promotes cellular proliferation and expansion. PSY1 is widely expressed in various tissues, including shoot apical meristem, and is highly up-regulated by wounding. Perception of PSY1 depends on At1g72300, a leucine-rich repeat receptor kinase (LRR-RK).	plant peptide containing sulfated tyrosine 1;(source:Araport11)
AT5G58660.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G58580.1	protein_coding	TOXICOS EN LEVADURA 63	Encodes a functional E3 ligase that is involved in membrane trafficking and regulation of salt stress responses. It is localized to membranes including the plasma membrane, pre-vacuolar compartments and Golgi.	TOXICOS EN LEVADURA 63;(source:Araport11)
AT5G58750.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Putative PRISE (progesterone 5&#946;-reductase and/or iridoid synthase-like 1,4-enone reductases).	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G58590.1	protein_coding	RAN binding protein 1	Encodes a Ran-binding protein 1 homolog (RanBP1).	RAN binding protein 1;(source:Araport11)
AT5G58670.1	protein_coding	phospholipase C1	phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response.  There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one).	phospholipase C1;(source:Araport11)
AT5G58760.1	protein_coding	damaged DNA binding 2	Encodes a DDB1a interacting protein DDB2 required for UV-B tolerance and genomic integrity.	damaged DNA binding 2;(source:Araport11)
AT5G58600.1	protein_coding	Plant protein of unknown function (DUF828)	Belongs to a large family of plant-specific genes of unknown function.  Involved in resistance to the powdery mildew species Erysiphe cichoracearum and Erysiphe orontii, but not to the unrelated pathogens Pseudomonas syringae or Peronospora parasitica.  A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein (DUF828);(source:Araport11)
AT5G58680.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G58770.1	protein_coding	Undecaprenyl pyrophosphate synthetase family protein	AtCPT7 synthesizes medium-chain polyprenols of approximately 55 carbons in length. The enzyme utlizes geranylgeranyl pyrophosphate (GGPP) and isopentenyl pyrophosphate (IPP) as substrates. The enzymatic product accumulates into plastdial membranes (DOI:10.1105/tpc.16.00796).	Undecaprenyl pyrophosphate synthetase family protein;(source:Araport11)
AT5G58610.1	protein_coding	PHD finger transcription factor, putative		PHD finger transcription factor;(source:Araport11)
AT5G58690.1	protein_coding	phosphatidylinositol-speciwc phospholipase C5		phosphatidylinositol-speciwc phospholipase C5;(source:Araport11)
AT5G58780.1	protein_coding	Undecaprenyl pyrophosphate synthetase family protein	Encodes a novel Z,E-mixed heptaprenyl diphosphate (Z,E-HepPP) synthase, which may be responsible for short-chain betulaprenols.  It catalyzes the formation of C 35 short-chain polyisoprenoids in which the optimal allylic substrate was E,E-FPP.  It may have a role in response to cold stress in root.	Undecaprenyl pyrophosphate synthetase family protein;(source:Araport11)
AT5G58620.1	protein_coding	zinc finger (CCCH-type) family protein		zinc finger (CCCH-type) family protein;(source:Araport11)
AT5G58700.1	protein_coding	phosphatidylinositol-speciwc phospholipase C4		phosphatidylinositol-speciwc phospholipase C4;(source:Araport11)
AT5G58790.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G58630.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G58710.1	protein_coding	rotamase CYP 7	Encodes cyclophilin ROC7. The mRNA is cell-to-cell mobile.	rotamase CYP 7;(source:Araport11)
AT5G58800.1	protein_coding	Quinone reductase family protein		Quinone reductase family protein;(source:Araport11)
AT5G58640.1	protein_coding	Selenoprotein, Rdx type		Selenoprotein, Rdx type;(source:Araport11)
AT5G58720.1	protein_coding	smr (Small MutS Related) domain-containing protein		smr (Small MutS Related) domain-containing protein;(source:Araport11)
AT5G58730.1	protein_coding	pfkB-like carbohydrate kinase family protein		pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT5G58740.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT5G17430.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium. PLT4 acts after PLT3,5 and 7 during lateral roof formation.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G17390.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT5G17400.1	protein_coding	endoplasmic reticulum-adenine nucleotide transporter 1	This gene is predicted to encode an ER-localized adenine nucleotide transporter with six putative transmembrane helices. It appears to act as a ATP:ADP antiporter when expressed in E.coli plasma membranes. Transcript levels for several ER-localized chaperones (e.g. BIP1/2) and other ATP-requiring ER proteins (e.g. CPK2) are reduced in er-ant1 knock-out lines, suggesting a lack of adequate ATP transport into the ER in these mutants. They also have reduced seed oil and seed protein levels.	endoplasmic reticulum-adenine nucleotide transporter 1;(source:Araport11)
AT5G17410.1	protein_coding	Spc97 / Spc98 family of spindle pole body (SBP) component		Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT5G17420.1	protein_coding	Cellulose synthase family protein	Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).  IRX3 is required for secondary cell wall biosynthesis.	Cellulose synthase family protein;(source:Araport11)
AT5G21070.1	protein_coding			Fe(3+) dicitrate transport system permease;(source:Araport11)
AT5G21080.1	protein_coding	Uncharacterized protein		Uncharacterized protein;(source:Araport11)
AT5G21170.1	protein_coding	5'-AMP-activated protein kinase beta-2 subunit protein	Encodes AKINbeta1, a subunit of the SnRK1 kinase (Sucrose non-fermenting-1-related protein kinase).  Involved in regulation of nitrogen and sugar metabolism. As part of the regulatory subunit, it binds maltose which promotes kinase activity.	5-AMP-activated protein kinase beta-2 subunit protein;(source:Araport11)
AT5G21090.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G21100.1	protein_coding	Plant L-ascorbate oxidase		Plant L-ascorbate oxidase;(source:Araport11)
AT5G21120.1	protein_coding	ETHYLENE-INSENSITIVE3-like 2	ethylene-insensitive3-like2 (EIL2)	ETHYLENE-INSENSITIVE3-like 2;(source:Araport11)
AT5G21130.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT5G21060.1	protein_coding	Glyceraldehyde-3-phosphate dehydrogenase-like family protein		Glyceraldehyde-3-phosphate dehydrogenase-like family protein;(source:Araport11)
AT5G21140.1	protein_coding	embryo defective 1379	Encodes a nuclear localized,  structural subunit of the SMC 5/6 complex and a non- SMC element. Loss of function results in abnormal cell division and embryo lethality. Analysis of partially rescued lines indicates a role in double strand break DNA repair. Similar phenotype to NSE3 which it also interacts with. Maintains cell viability together with NSE3 during early embryogenesis.	embryo defective 1379;(source:Araport11)
AT5G21150.1	protein_coding	Argonaute family protein	AGO9-dependent sRNA silencing is crucial to  specify cell fate in the Arabidopsis ovule. AGO9 is expressed in reproductive  companion cells but not in the associated male or female gametes or  their precursors. Therefore, AGO9 acts non-cell autonomously to   silencing the activity of TEs activity in the female gametophyte.Loss of function mutants produce ectopic megaspore mother cell and supernumary female gametophytes.	Argonaute family protein;(source:Araport11)
AT5G21160.1	protein_coding	LA RNA-binding protein	Encodes a protein with sequence similarity to mRNA binding proteins from humans. LARP1a is involved in mRNA degradation in response to heat stress. Upon heat stress LARP1a interacts with XRN4 and appears to be responsible for addressing XRN4 to the polysome. LARP1/XRN4 double mutants are impaired in thermotolerance and lower levels of heat induced RNA turnover.	LA RNA-binding protein;(source:Araport11)
AT5G28590.1	protein_coding	DNA-binding family protein		DNA-binding family protein;(source:Araport11)
AT5G28600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1);(source:TAIR10)
AT5G28610.1	protein_coding			LOW protein: ATP-dependent RNA helicase DRS1-like protein;(source:Araport11)
AT5G28620.1	protein_coding	protein kinase C-related		kinase C-like protein;(source:Araport11)
AT5G28550.1	protein_coding			separase;(source:Araport11)
AT5G28560.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G28570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12725.1);(source:TAIR10)
AT5G01310.1	protein_coding	APRATAXIN-like	Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.	APRATAXIN-like protein;(source:Araport11)
AT5G01390.1	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT5G01320.1	protein_coding	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein		Thiamine pyrophosphate dependent pyruvate decarboxylase family protein;(source:Araport11)
AT5G01400.1	protein_coding	HEAT repeat-containing protein	Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64.	HEAT repeat-containing protein;(source:Araport11)
AT5G01410.1	protein_coding	Aldolase-type TIM barrel family protein	Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT5G01330.1	protein_coding	pyruvate decarboxylase-3	pyruvate decarboxylase	pyruvate decarboxylase-3;(source:Araport11)
AT5G01340.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G01420.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT5G01350.1	protein_coding			UvrABC system C protein;(source:Araport11)
AT5G01430.1	protein_coding	Got1/Sft2-like vescicle transport protein family		Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT5G01360.1	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).The dwarf phenotype can only be seen in tbl3 tbl31 esk1 triple mutant. tbl3 and tbl31 are specifically involved in 3-O-monoacetylation of xylan.	trichome birefringence-like protein (DUF828);(source:Araport11)
AT5G01440.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G01370.1	protein_coding	ALC-interacting protein 1	Nuclear protein with a lysine-rich  domain and a C-terminal serine-rich domain. Interacts with Alcatraz (ALC). ACI1 is mainly expressed in the vascular system. Involved in cell separation during fruit dehiscence.	ALC-interacting protein 1;(source:Araport11)
AT5G01450.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G01380.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT5G01460.1	protein_coding	LMBR1-like membrane protein		LMBR1-like membrane protein;(source:Araport11)
AT5G01470.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G25000.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G25090.1	protein_coding	early nodulin-like protein 13		early nodulin-like protein 13;(source:Araport11)
AT5G25010.1	protein_coding	Protein of unknown function (DUF1336)		enhanced disease resistance-like protein (DUF1336);(source:Araport11)
AT5G25100.1	protein_coding	Endomembrane protein 70 protein family		Endomembrane protein 70 protein family;(source:Araport11)
AT5G25020.1	protein_coding	Protein of unknown function (DUF1336)		enhanced disease resistance-like protein (DUF1336);(source:Araport11)
AT5G25110.1	protein_coding	CBL-interacting protein kinase 25	member of AtCIPKs	CBL-interacting protein kinase 25;(source:Araport11)
AT5G25030.1	protein_coding	Domain of unknown function (DUF2431)		ATP-binding protein (DUF2431);(source:Araport11)
AT5G25120.1	protein_coding	ytochrome p450, family 71, subfamily B, polypeptide 11	putative cytochrome P450 The mRNA is cell-to-cell mobile.	cytochrome p450, family 71, subfamily B, polypeptide 11;(source:Araport11)
AT5G25040.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G25050.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G25060.1	protein_coding	RNA recognition motif (RRM)-containing protein		RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT5G25070.1	protein_coding			neurofilament light protein;(source:Araport11)
AT5G25080.1	protein_coding	Sas10/Utp3/C1D family		Sas10/Utp3/C1D family;(source:Araport11)
AT5G64440.1	protein_coding	fatty acid amide hydrolase	AtFAAH (fatty acid amide hydrolase) modulates endogenous NAEs (N-Acylethanolamines) levels in plants by hydrolyzing NAEs to ethanolamine and their corresponding free fatty acids. NAE depletion likely participates in the regulation of plant growth. The mRNA is cell-to-cell mobile.	fatty acid amide hydrolase;(source:Araport11)
AT5G64450.1	protein_coding			NYN domain protein;(source:Araport11)
AT5G64460.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT5G64470.1	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT5G64480.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G64490.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G64500.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G25600.1	protein_coding			putative nucleic-acid protein;(source:Araport11)
AT5G25520.1	protein_coding	SPOC domain / Transcription elongation factor S-II protein		SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT5G25610.1	protein_coding	BURP domain-containing protein	responsive to dehydration 22 (RD22) mediated by ABA	BURP domain-containing protein;(source:Araport11)
AT5G25530.1	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT5G25620.1	protein_coding	Flavin-binding monooxygenase family protein	Encodes a member of a family of flavin monooxygenases with an important role in auxin biosynthesis. YUC6 possesses an additional thiol-reductase activity that confers drought resistance independently of auxin biosynthesis.	Flavin-binding monooxygenase family protein;(source:Araport11)
AT5G25540.1	protein_coding	CTC-interacting domain 6	Expressed protein contains PAM2 PABC interacting domain.	CTC-interacting domain 6;(source:Araport11)
AT5G25630.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G25550.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G25640.1	protein_coding	Rhomboid-related intramembrane serine protease family protein		Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT5G25750.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G25480.1	protein_coding	DNA methyltransferase-2	Encodes a DNA methyltransferase homolog.  Human Dnmt2 methylates tRNA-Asp and can methylate Arabidopsis tRNA-Asp in vitro.	DNA methyltransferase-2;(source:Araport11)
AT5G25560.1	protein_coding	CHY-type/CTCHY-type/RING-type Zinc finger protein		CHY-type/CTCHY-type/RING-type Zinc finger protein;(source:Araport11)
AT5G25490.1	protein_coding	Ran BP2/NZF zinc finger-like superfamily protein		Ran BP2/NZF zinc finger-like superfamily protein;(source:Araport11)
AT5G25570.1	protein_coding			polyamine-modulated factor 1-binding protein;(source:Araport11)
AT5G25500.1	protein_coding			exosome complex exonuclease;(source:Araport11)
AT5G25580.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G25510.1	protein_coding	Protein phosphatase 2A regulatory B subunit family protein		Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT5G25590.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		DNA ligase (DUF630 and DUF632);(source:Araport11)
AT5G32490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G19080.1	protein_coding	RING/U-box superfamily protein	Paralog of LOG2 (At3g09770), a ubiquitin ligase that regulates amino acid export.	RING/U-box superfamily protein;(source:Araport11)
AT5G19000.1	protein_coding	BTB-POZ and MATH domain 1	Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 1;(source:Araport11)
AT5G19090.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G19010.1	protein_coding	mitogen-activated protein kinase 16	member of MAP Kinase	mitogen-activated protein kinase 16;(source:Araport11)
AT5G19100.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G19020.1	protein_coding	mitochondrial editing factor  18	Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.	mitochondrial editing factor 18;(source:Araport11)
AT5G19030.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G19040.1	protein_coding	isopentenyltransferase 5	Encodes cytokinin synthase.	isopentenyltransferase 5;(source:Araport11)
AT5G19050.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G19060.1	protein_coding			cytochrome P450 family protein;(source:Araport11)
AT5G18980.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G19070.1	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT5G18990.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G26160.1	protein_coding			light-independent protochlorophyllide reductase subunit;(source:Araport11)
AT5G26170.1	protein_coding	WRKY DNA-binding protein 50	member of WRKY Transcription Factor; Group II-c.  Involved in jasmonic acid inducible defense responses.	WRKY DNA-binding protein 50;(source:Araport11)
AT5G26180.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G26190.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G13120.1	protein_coding	cyclophilin 20-2	Encodes a lumenal cyclophilin with peptidyl-prolyl isomerase activity that is associated with the NAD(P)H dehydrogenase complex in stromal regions of the thylakoid membrane. It is likely to be important for the accumulation of the hydrophobic domain of the NAD(P)H dehydrogenase complex. This complex is associated with PSI and is responsible for the reduction of plastoquinone.	cyclophilin 20-2;(source:Araport11)
AT5G13050.1	protein_coding	5-formyltetrahydrofolate cycloligase	5-Formyltetrahydrofolate cycloligase (5-CHO-THF cycloligase - AT5G13050.1) regulates/influences under photorespiratory conditions the activity of another gene product, i.e. serine hydroxymethyltransferase (SHMT) due to accumulating amounts of 5-Formyltetrahydrofolate	5-formyltetrahydrofolate cycloligase;(source:Araport11)
AT5G13140.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G13130.1	protein_coding	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	Member of the microrchidia protein family which have been described as epigenetic regulators and plant immune mediators, contains a hallmark GHKL-type ATPase domain in N-terminus. Possible role in the development of reproductive tissues.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein;(source:Araport11)
AT5G13060.1	protein_coding	ARMADILLO BTB protein 1	Encodes a novel Armadillo BTB protein that intreacts with the pre-replication complex and several transcription factors. Overexpression  results in decreased cell proliferation and loss of function results in increased cell proliferation suggesting a role in negative regulation of cellular proliferation.	ARMADILLO BTB protein 1;(source:Araport11)
AT5G13150.1	protein_coding	exocyst subunit exo70 family protein C1	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. This particular member is expressed in pollen and, together with EXO70C2, is involved in pollen tube elongation. Found in the cytoplasm and surprisingly, not found in the plasma membrane.	exocyst subunit exo70 family protein C1;(source:Araport11)
AT5G13070.1	protein_coding	MSF1-like family protein		MSF1-like family protein;(source:Araport11)
AT5G13160.1	protein_coding	Protein kinase superfamily protein	Mutant is defective in perception of Pseudomonas syringae avirulence gene avrPphB. Encodes a putative serine-threonine kinase.	Protein kinase superfamily protein;(source:Araport11)
AT5G13080.1	protein_coding	WRKY DNA-binding protein 75	WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants  more susceptible to Pi stress as indicated by the  higher accumulation of anthocyanin during Pi starvation.	WRKY DNA-binding protein 75;(source:Araport11)
AT5G13170.1	protein_coding	senescence-associated gene 29	Encodes a member of the SWEET sucrose efflux transporter family proteins.	senescence-associated gene 29;(source:Araport11)
AT5G13090.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G13180.1	protein_coding	NAC domain containing protein 83	Encodes a NAC domain transcription factor that interacts with VND7 and negatively regulates xylem vessel formation.	NAC domain containing protein 83;(source:Araport11)
AT5G13100.1	protein_coding			Gap junction beta-4 protein;(source:Araport11)
AT5G13110.1	protein_coding	glucose-6-phosphate dehydrogenase 2	Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.	glucose-6-phosphate dehydrogenase 2;(source:Araport11)
AT5G04360.1	protein_coding	limit dextrinase	Encodes an enzyme thought to be involved in the hydrolysis of the &#945;-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.	limit dextrinase;(source:Araport11)
AT5G04390.1	protein_coding	C2H2-type zinc finger family protein		C2H2-type zinc finger family protein;(source:Araport11)
AT5G04370.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	A member of the Arabidopsis SABATH methyltransferase gene family.  Encodes NAMT1, a methyltransferase that methylates nicotinic acid to yield methyl nicotinate.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G04280.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain	Encodes one of the zinc finger-containing glycine-rich RNA-binding proteins involved in cold tolerance: AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b), AT5G04280 (AtRZ-1c).  It also, along with AtRZ-1b, plays important roles in plant development, pre- mRNA splicing, and general gene expression.	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT5G04400.1	protein_coding	NAC domain containing protein 77		NAC domain protein;(source:Araport11)
AT5G04310.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G04320.1	protein_coding	Shugoshin C terminus	Encodes a protein that protects meiotic centromere cohesion.	Shugoshin C terminus;(source:Araport11)
AT5G04330.1	protein_coding	Cytochrome P450 superfamily protein		Cytochrome P450 superfamily protein;(source:Araport11)
AT5G04340.1	protein_coding	zinc finger of Arabidopsis thaliana 6	Encodes a C2H2 zinc finger transcription factor that coordinately activates phytochelatin-synthesis related gene expression and directly targets GSH1 by binding to its promoter to positively regulate Cd accumulation and tolerance.	6;(source:Araport11)
AT5G04380.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G04350.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G04290.1	protein_coding	kow domain-containing transcription factor 1	Encodes SPT5-Like, a member of the nuclear SPT5 (Suppressor of Ty insertion 5) RNA polymerase (RNAP) elongation factor family that is characterized by the presence of a carboxy-terminal extension with more than 40 WG/GW motifs.  Interacts with AGO4. Required for RNA-directed DNA methylation. The mRNA is cell-to-cell mobile.	kow domain-containing transcription factor 1;(source:Araport11)
AT5G18660.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes a protein with 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity. Mutants accumulate divinyl chlorophyll rather than monovinyl chlorophyll.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G18670.1	protein_coding	beta-amylase 3	putative beta-amylase BMY3 (BMY3)	beta-amylase 3;(source:Araport11)
AT5G18680.1	protein_coding	tubby like protein 11	Member of TLP family of tubby like proteins that also contain an F-Box. Localized to the plasma membrane.	tubby like protein 11;(source:Araport11)
AT5G18690.1	protein_coding	arabinogalactan protein 25		arabinogalactan protein 25;(source:Araport11)
AT5G18700.1	protein_coding	Protein kinase family protein with ARM repeat domain	Encodes a microtubule-associated kinase-like protein RUNKEL (RUK). Contains a putative serine/threonine kinase domain and a microtubule-binding domain. RUK directly binds to microtubules in vitro and colocalizes with mitotic preprophase band, spindle, and phragmoplast in vivo.  Required for cell plate expansion in cytokinesis.	kinase family with ARM repeat domain-containing protein;(source:Araport11)
AT5G18710.1	protein_coding	Domain of unknown function (DUF3444)		DNAJ heat shock amino-terminal domain protein, putative (DUF3444);(source:Araport11)
AT5G18630.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G18720.1	protein_coding	Domain of unknown function (DUF3444)		DNAJ heat shock amino-terminal domain protein, putative (DUF3444);(source:Araport11)
AT5G18640.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G18650.1	protein_coding	CHY-type/CTCHY-type/RING-type Zinc finger protein	Encodes a RING-type E3 ubiquitin ligase that interacts with and ubiquitinates MYB30, leads to MYB30 proteasomal degradation and downregulation of its transcriptional activity.  Since MYB30 is a positive regulator of Arabidopsis HR and defence responses, MIEL1 is involved in the negative regulation of these processes. The mRNA is cell-to-cell mobile.	CHY-type/CTCHY-type/RING-type Zinc finger protein;(source:Araport11)
AT5G02350.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G02270.1	protein_coding	non-intrinsic ABC protein 9	member of NAP subfamily	non-intrinsic ABC protein 9;(source:Araport11)
AT5G02360.1	protein_coding	DC1 domain-containing protein		DC1 domain-containing protein;(source:Araport11)
AT5G02280.1	protein_coding	SNARE-like superfamily protein	Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	SNARE-like superfamily protein;(source:Araport11)
AT5G02370.1	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT5G02290.1	protein_coding	Protein kinase superfamily protein	Encodes a candidate protein kinase NAK that is similar to the oncogenes met and abl.	Protein kinase superfamily protein;(source:Araport11)
AT5G02380.1	protein_coding	metallothionein 2B	cysteine-rich protein with copper-binding activity	metallothionein 2B;(source:Araport11)
AT5G02390.1	protein_coding	Protein of unknown function (DUF3741)	Target promoter of the male germline-specific transcription factor DUO1.	TRM32-like protein (DUF3741);(source:Araport11)
AT5G02310.1	protein_coding	proteolysis 6	Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE).  Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. The mRNA is cell-to-cell mobile.	proteolysis 6;(source:Araport11)
AT5G02400.1	protein_coding	pol-like 2	Encodes a protein with similarity to the POL locus which is a novel protein phosphatase 2C. Ubiquitously expressed. No phenotype observed in homozygous null mutant background.	pol-like 2;(source:Araport11)
AT5G02320.1	protein_coding	myb domain protein 3r-5	Encodes a putative c-MYB-like transcription factor of the MYB3R factor gene family (MYB3R5).	myb domain protein 3r-5;(source:Araport11)
AT5G02410.1	protein_coding	DIE2/ALG10 family	Encodes ALG10, an ER-resident alpha1,2-glucosyltransferase that is required for lipid-linked oligosaccharide biosynthesis and subsequently for normal leaf development and abiotic stress response.	DIE2/ALG10 family;(source:Araport11)
AT5G02330.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G02250.1	protein_coding	Ribonuclease II/R family protein	Encodes a exoribonuclease involved in rRNA processing in mitochondria and chloroplasts.Loss of function mutations are pale green and require supplementation with sucrose for germination and early development. Plants are pale green due to defects in chloroplast biogenesis.	Ribonuclease II/R family protein;(source:Araport11)
AT5G02340.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G02260.1	protein_coding	expansin A9	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A9;(source:Araport11)
AT5G04660.1	protein_coding	cytochrome P450, family 77, subfamily A, polypeptide 4	encodes a protein with cytochrome P450 domain	cytochrome P450, family 77, subfamily A, polypeptide 4;(source:Araport11)
AT5G04670.1	protein_coding	Enhancer of polycomb-like transcription factor protein	Polycomb related protein that is part of a protein complex involved in histone deacetylation and heterochromatin silencing.	Enhancer of polycomb-like transcription factor protein;(source:Araport11)
AT5G04680.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G04690.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G27680.1	protein_coding	RECQ helicase SIM		RECQ helicase SIM;(source:Araport11)
AT5G27770.1	protein_coding	Ribosomal L22e protein family		Ribosomal L22e protein family;(source:Araport11)
AT5G27690.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G27780.1	protein_coding	SAUR-like auxin-responsive protein family 	SAUR75 expression is induced during pollination and expressed in pollen tubes.  SAUR75 likely functions in translation of proteins required for pollen tube development/function.	SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G27700.1	protein_coding	Ribosomal protein S21e 	Cytosolic ribosomal protein. Similar to EVR1 and redundant with EVR1. Also enhances VAR2 mutant varigation, but to a lesser extent than evr1.	Ribosomal protein S21e;(source:Araport11)
AT5G27790.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G27710.1	protein_coding			T-box protein;(source:Araport11)
AT5G27800.1	protein_coding	Class II aminoacyl-tRNA and biotin synthetases superfamily protein		Class II aminoacyl-tRNA and biotin synthetases superfamily protein;(source:Araport11)
AT5G27720.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT5G27810.1	protein_coding	MADS-box transcription factor family protein		MADS-box transcription factor family protein;(source:Araport11)
AT5G27730.1	protein_coding	Protein of unknown function (DUF1624)		heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G27820.1	protein_coding	Ribosomal L18p/L5e family protein		Ribosomal L18p/L5e family protein;(source:Araport11)
AT5G27740.1	protein_coding	ATPase family associated with various cellular activities (AAA) 	A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	ATPase family associated with various cellular activities (AAA);(source:Araport11)
AT5G27830.1	protein_coding			folate receptor family protein;(source:Araport11)
AT5G27750.1	protein_coding	F-box/FBD-like domains containing protein		F-box/FBD-like domains containing protein;(source:Araport11)
AT5G27840.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein	Encodes a Type One Protein Phosphatase that acts as a nucleocytoplasmic negative regulator of tip growth. Mutants affect pollen germination, pollen tube growth, and root hair growth. It acts genetically downstream of ANX1 (AT3G04690) and ANX2 (AT5G28680) and is functionally redundant with ATUNIS1/TOPP9 (AT3G05580).	Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT5G27760.1	protein_coding	Hypoxia-responsive family protein		Hypoxia-responsive family protein;(source:Araport11)
AT5G20760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42700.1);(source:TAIR10)
AT5G20680.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 16	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 16;(source:Araport11)
AT5G20770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34820.1);(source:TAIR10)
AT5G20690.1	protein_coding	Leucine-rich repeat protein kinase family protein	PRK6 is  pollen specific receptor kinase that functions as a receptor for the pollen attractant LURE1 in pollen tube guidance. It is localized to the tip the pollen tube and becomes asymmetrically distributed towards the source of the LURE1 signal prior to pollen tube growth reorientation.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G20780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.4e-66 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G20790.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G20610.1	protein_coding		Encodes a member of a plant specific C2 domain containing gene family. Along with PMI, it appears to be involved in chloroplast and nuclear relocation in response to light.	EEIG1/EHBP1 protein amino-terminal domain protein;(source:Araport11)
AT5G20700.1	protein_coding	Protein of unknown function (DUF581)		senescence-associated family protein, putative (DUF581);(source:Araport11)
AT5G20620.1	protein_coding	ubiquitin 4	encodes a ubiquitin polyprotein.	ubiquitin 4;(source:Araport11)
AT5G20710.1	protein_coding	beta-galactosidase 7		beta-galactosidase 7;(source:Araport11)
AT5G20630.1	protein_coding	germin 3	Encodes a germin-like protein. Its transcripts are more abundant in RNA from leaves collected in the evening, suggesting some kind of circadian regulation.	germin 3;(source:Araport11)
AT5G20800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase, predicted non-LTR reverse ranscriptase sequence fragments;(source:TAIR10)
AT5G20720.1	protein_coding	chaperonin 20	Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES.	chaperonin 20;(source:Araport11)
AT5G20640.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT5G20810.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G20730.1	protein_coding	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related	Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses.  Together with AUX19, it is  involved in the response to ethylene.  In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein;(source:Araport11)
AT5G20650.1	protein_coding	copper transporter 5	Encodes COPT5, a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast.  Plays an important role in the plant response to environmental copper scarcity, probably by remobilizing copper from prevacuolar vesicles, which could act as internal stores or recycling vesicles to provide the metal cofactor to key copper-dependent processes such as photosynthesis.	copper transporter 5;(source:Araport11)
AT5G20820.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G20740.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G20830.1	protein_coding	sucrose synthase 1	Encodes a protein with sucrose synthase activity (SUS1).	sucrose synthase 1;(source:Araport11)
AT5G20660.1	protein_coding	Zn-dependent exopeptidases superfamily protein		Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT5G20670.1	protein_coding	Protein of unknown function (DUF1677)		DUF1677 family protein (DUF1677);(source:Araport11)
AT5G20750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42690.1);(source:TAIR10)
AT5G25960.1	protein_coding	Protein of Unknown Function (DUF239)		AslB (DUF239);(source:Araport11)
AT5G25970.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G26060.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G25980.1	protein_coding	glucoside glucohydrolase 2	Myrosinase (thioglucoside glucohydrolase) gene involved in glucosinoloate metabolism. The mRNA is cell-to-cell mobile.	glucoside glucohydrolase 2;(source:Araport11)
AT5G26070.1	protein_coding	hydroxyproline-rich glycoprotein family protein	Encodes a protein with 23.5% proline residues  and proline-rich extensin domains, INTERPRO:IPR002965; similar to root nodule extensin (Pisum sativum) gi:15021750/gb:AAK77902; Common family members: At5g19800, At5g57070, At1g72790 (Arabidopsis thaliana)	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G25990.1	protein_coding			core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G26080.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT5G26000.1	protein_coding	thioglucoside glucohydrolase 1	member of Glycoside Hydrolase Family 1. encodes one of two known functional myrosinase enzymes in Arabidopsis. The enzyme catalyzes the hydrolysis of glucosinolates into compounds that are toxic to various microbes and herbivores.	thioglucoside glucohydrolase 1;(source:Araport11)
AT5G26090.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G26010.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT5G26100.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G26020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Glutamic acid-rich protein precursor (GB:P13816);(source:TAIR10)
AT5G26110.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G26030.1	protein_coding	ferrochelatase 1	encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins The mRNA is cell-to-cell mobile.	ferrochelatase 1;(source:Araport11)
AT5G26120.1	protein_coding	alpha-L-arabinofuranosidase 2		alpha-L-arabinofuranosidase 2;(source:Araport11)
AT5G26040.1	protein_coding	histone deacetylase 2	Class III RPD3 type protein. Encodes HDA2, a member of the histone deacetylase family proteins.	histone deacetylase 2;(source:Araport11)
AT5G26130.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT5G26050.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G26140.1	protein_coding	Putative lysine decarboxylase family protein		Putative lysine decarboxylase family protein;(source:Araport11)
AT5G26150.1	protein_coding	protein kinase family protein		protein kinase family protein;(source:Araport11)
AT5G19560.1	protein_coding	ROP uanine nucleotide exchange factor 10	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	ROP uanine nucleotide exchange factor 10;(source:Araport11)
AT5G19490.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT5G19580.1	protein_coding	glyoxal oxidase-related protein		glyoxal oxidase-related protein;(source:Araport11)
AT5G19570.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G19500.1	protein_coding	Tryptophan/tyrosine permease	Encodes a putative amino acid transporter that localizes to the chloroplast inner envelope membrane.	Tryptophan/tyrosine permease;(source:Araport11)
AT5G19510.1	protein_coding	Translation elongation  factor EF1B/ribosomal protein S6 family protein		Translation elongation factor EF1B/ribosomal protein S6 family protein;(source:Araport11)
AT5G19520.1	protein_coding	mechanosensitive channel of small conductance-like 9		mechanosensitive channel of small conductance-like 9;(source:Araport11)
AT5G19530.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a spermine synthase.  Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions.   This mechanism may be mediated by polar auxin transport.  Though ACL5 has been shown to function as a spermine  synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G19540.1	protein_coding		DY1 is a novel nuclear encoded protein that is imported into the chloroplast stroma. Mutants have reduced pigmentation and somewhat abnormal thylakoid membranes.	thermosome subunit gamma;(source:Araport11)
AT5G19550.1	protein_coding	aspartate aminotransferase 2	Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light. The mRNA is cell-to-cell mobile.	aspartate aminotransferase 2;(source:Araport11)
AT5G15560.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G15480.1	protein_coding	C2H2-type zinc finger family protein	Cys2/His2 zinc finger protein involved in pollen wall development.	C2H2-type zinc finger family protein;(source:Araport11)
AT5G15570.1	protein_coding	Bromodomain transcription factor		Bromodomain transcription factor;(source:Araport11)
AT5G15580.1	protein_coding	longifolia1	Encodes LONGIFOLIA1 (LNG1). Regulates leaf morphology by promoting cell expansion in the leaf-length direction.  The LNG1 homologue LNG2 (At3g02170) has similar function.	longifolia1;(source:Araport11)
AT5G15400.1	protein_coding	U-box domain-containing protein	Single copy gene encoding a putative ubiquitin conjugating E4 factor. Contains Ub elongating factor core domain and C-terminal U-box. Involved in ubiquitination of NLRs.	U-box domain-containing protein;(source:Araport11)
AT5G15410.1	protein_coding	Cyclic nucleotide-regulated ion channel family protein	'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile.  Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens. CNGC2 could be the key step mediating bulk Ca2+ influx into leaf cells after unloading from the vascular and have no direct roles in the leaf development and HR.	Cyclic nucleotide-regulated ion channel family protein;(source:Araport11)
AT5G15490.1	protein_coding	UDP-glucose 6-dehydrogenase family protein	Encodes one of four UDP-glucose dehydrogenase UGD) genes.  Mutation of this gene in combination with UGD2 leads to swollen plant cell walls and severe developmental defects associated with changes in pectic polysaccharides.	UDP-glucose 6-dehydrogenase family protein;(source:Araport11)
AT5G15420.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G15500.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G15430.1	protein_coding	Plant calmodulin-binding protein-related		Plant calmodulin-binding protein-like protein;(source:Araport11)
AT5G15510.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family		TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT5G15600.1	protein_coding	SPIRAL1-like4	SPIRAL1-LIKE4 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.	SPIRAL1-like4;(source:Araport11)
AT5G15440.1	protein_coding	EID1-like 1		EID1-like 1;(source:Araport11)
AT5G15520.1	protein_coding	Ribosomal protein S19e family protein		Ribosomal protein S19e family protein;(source:Araport11)
AT5G15610.1	protein_coding	Proteasome component (PCI) domain protein		Proteasome component (PCI) domain protein;(source:Araport11)
AT5G15450.1	protein_coding	casein lytic proteinase B3	Encodes a chloroplast-targeted Hsp101 homologue.  Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress.  APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves.  APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses.  Apg6 mutants have a pale-green phenotype.	casein lytic proteinase B3;(source:Araport11)
AT5G15530.1	protein_coding	biotin carboxyl carrier protein 2	biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA,	biotin carboxyl carrier protein 2;(source:Araport11)
AT5G15620.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G15460.1	protein_coding	membrane-anchored ubiquitin-fold protein 2		membrane-anchored ubiquitin-fold protein 2;(source:Araport11)
AT5G15540.1	protein_coding	PHD finger family protein	Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of  sister-chromatid cohesion and chromosome organization  during meiosis.	PHD finger family protein;(source:Araport11)
AT5G15470.1	protein_coding	galacturonosyltransferase 14	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 14;(source:Araport11)
AT5G15550.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G01840.1	protein_coding	ovate family protein 1	Encodes a member of the plant specific ovate protein family. Members of this family have been shown to bind to KNOX and BELL- like TALE class homeodomain proteins. This interaction may mediate relocalization of the TALE homeodomain from the nucleus to the cytoplasm.  Functions as a transcriptional repressor that suppresses cell elongation.	ovate family protein 1;(source:Araport11)
AT5G01760.1	protein_coding	ENTH/VHS/GAT family protein		ENTH/VHS/GAT family protein;(source:Araport11)
AT5G01930.1	protein_coding	Glycosyl hydrolase superfamily protein	Encodes a endo-beta-mannanase involved in seed germination.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT5G01850.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G01770.1	protein_coding	HEAT repeat ;WD domain, G-beta repeat protein protein	Encodes one of two Arabidopsis RAPTOR/KOG1 homologs.  RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients.   Mutations in this gene have no visible effects on embryo or plant development.	regulatory-associated protein of TOR 2 (RAPTOR2);(source:Araport11)
AT5G01940.1	protein_coding	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein		eukaryotic translation initiation factor 2B family protein / eIF-2B family protein;(source:Araport11)
AT5G01860.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G01780.1	protein_coding	2-oxoglutarate-dependent dioxygenase family protein		2-oxoglutarate-dependent dioxygenase family protein;(source:Araport11)
AT5G01950.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G01870.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G01790.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G01880.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G01800.1	protein_coding	saposin B domain-containing protein		saposin B domain-containing protein;(source:Araport11)
AT5G01890.1	protein_coding	Leucine-rich receptor-like protein kinase family protein		Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT5G01810.1	protein_coding	CBL-interacting protein kinase 15	Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase.	CBL-interacting protein kinase 15;(source:Araport11)
AT5G01900.1	protein_coding	WRKY DNA-binding protein 62	member of WRKY Transcription Factor; Group III	WRKY DNA-binding protein 62;(source:Araport11)
AT5G01820.1	protein_coding	serine/threonine protein kinase 1	Encodes a CBL-interacting serine/threonine protein kinase.	serine/threonine protein kinase 1;(source:Araport11)
AT5G01910.1	protein_coding			myelin transcription factor;(source:Araport11)
AT5G01920.1	protein_coding	Protein kinase superfamily protein	Chloroplast thylakoid protein kinase STN8 is specific in phosphorylation of N-terminal threonine residues in D1, D2  and CP43 proteins, and Thr-4 in PsbH  protein of photosystem II. Phosphorylation of Thr-4 in  the wild type required both light and prior  phosphorylation at Thr-2.	Protein kinase superfamily protein;(source:Araport11)
AT5G01740.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein	Unknown gene, induced by abiotic stress treatments.	Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT5G01830.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G01750.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT5G23010.1	protein_coding	methylthioalkylmalate synthase 1	Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates. The mRNA is cell-to-cell mobile.	methylthioalkylmalate synthase 1;(source:Araport11)
AT5G27100.1	protein_coding	glutamate receptor 2.1	member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.1;(source:Araport11)
AT5G27110.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G27190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.3e-76 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G27120.1	protein_coding	NOP56-like pre RNA processing ribonucleoprotein	SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 protein The mRNA is cell-to-cell mobile.	NOP56-like pre RNA processing ribonucleoprotein;(source:Araport11)
AT5G27200.1	protein_coding	acyl carrier protein 5	Encodes an acyl carrier protein family member. Expression is induced by salt stress and overexpression leads to increased salt tolerance.	acyl carrier protein 5;(source:Araport11)
AT5G27130.1	protein_coding	AGAMOUS-like 39		AGAMOUS-like 39;(source:Araport11)
AT5G27210.1	protein_coding	Protein of unknown function, transmembrane-40		Protein of unknown function, transmembrane-40;(source:Araport11)
AT5G27140.1	protein_coding	NOP56-like pre RNA processing ribonucleoprotein		NOP56-like pre RNA processing ribonucleoprotein;(source:Araport11)
AT5G27220.1	protein_coding	Frigida-like protein		Frigida-like protein;(source:Araport11)
AT5G27150.1	protein_coding	Na+/H+ exchanger 1	Encodes a vacuolar sodium/proton antiporter involved in salt tolerance, ion homeostasis, and leaf development. The mRNA is cell-to-cell mobile.	Na+/H+ exchanger 1;(source:Araport11)
AT5G27230.1	protein_coding	Frigida-like protein		Frigida-like protein;(source:Araport11)
AT5G27160.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07520.1);(source:TAIR10)
AT5G27240.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G27170.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G27180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1);(source:TAIR10)
AT5G16090.1	protein_coding			RAD23 UV excision repair family protein;(source:Araport11)
AT5G16100.1	protein_coding			RWP-RK domain protein;(source:Araport11)
AT5G16180.1	protein_coding	ortholog of maize chloroplast splicing factor CRS1	Promotes the splicing of chloroplast group II introns. Splices atpF introns.	maize chloroplast splicing factor-like protein;(source:Araport11)
AT5G16110.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G16190.1	protein_coding	cellulose synthase like A11	encodes a gene similar to cellulose synthase	cellulose synthase like A11;(source:Araport11)
AT5G16280.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G16120.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G16200.1	protein_coding	50S ribosomal protein-related		50S ribosomal protein-like protein;(source:Araport11)
AT5G16130.1	protein_coding	Ribosomal protein S7e family protein		Ribosomal protein S7e family protein;(source:Araport11)
AT5G16210.1	protein_coding	HEAT repeat-containing protein		HEAT repeat-containing protein;(source:Araport11)
AT5G16140.1	protein_coding	Peptidyl-tRNA hydrolase family protein		Peptidyl-tRNA hydrolase family protein;(source:Araport11)
AT5G16220.1	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT5G16150.1	protein_coding	plastidic GLC translocator	Encodes a putative plastidic glucose transporter.	plastidic GLC translocator;(source:Araport11)
AT5G16230.1	protein_coding	Plant stearoyl-acyl-carrier-protein desaturase family protein	Encodes one of two &#8710;9 palmitoyl-ACP desaturases responsible for the biosynthesis of &#969;-7 fatty acids in the maturing endosperm.	Plant stearoyl-acyl-carrier-protein desaturase family protein;(source:Araport11)
AT5G16160.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G16240.1	protein_coding	Plant stearoyl-acyl-carrier-protein desaturase family protein		Plant stearoyl-acyl-carrier-protein desaturase family protein;(source:Araport11)
AT5G16170.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G16250.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G16260.1	protein_coding	RNA binding (RRM/RBD/RNP motifs) family protein	Encodes a RNA binding protein ELF9 (EARLY FLOWERING9).  Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days.  ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay. The mRNA is cell-to-cell mobile.	RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G16270.1	protein_coding	sister chromatid cohesion 1 protein 4	Encodes a SCC1/REC8 ortholog that may be involved in mitosis and may represent a mitotic cohesin. Plays a role in somatic DNA double strand break damage repair. The mRNA is cell-to-cell mobile.	sister chromatid cohesion 1 protein 4;(source:Araport11)
AT5G08070.1	protein_coding	TCP domain protein 17	TCP gene involved in heterochronic control of leaf differentiation.	TCP domain protein 17;(source:Araport11)
AT5G08080.1	protein_coding	syntaxin of plants 132	member of SYP13 Gene Family	syntaxin of plants 132;(source:Araport11)
AT5G08160.1	protein_coding	serine/threonine protein kinase 3	Encodes a serine/threonine protein kinase.	serine/threonine protein kinase 3;(source:Araport11)
AT5G08090.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G08170.1	protein_coding	porphyromonas-type peptidyl-arginine deiminase family protein		porphyromonas-type peptidyl-arginine deiminase family protein;(source:Araport11)
AT5G08100.1	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	Encodes an asparaginase that catalyzes the degradation of L-asparagine to L-aspartic acid and ammonia.	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT5G08180.1	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT5G08110.1	protein_coding	nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases	Plays a role in the maintenance of genome stability and the repair of aberrant replication intermediates in the root meristem. Is involved with RAD1, FAN1, and RECQ4A in the repair of DNA CLs.	UBQ, helicase-c and DEAD-like helicase domain-containing protein;(source:Araport11)
AT5G08120.1	protein_coding	movement protein binding protein 2C	Microtubule-associated and viral movement protein binding protein. Negatively regulates KN1 association to plasmodesmata and, consequently, cell-to-cell  transport. Involved in the alignment of cortical microtubules, the patterning of stomata and in restricting tobamoviral infections.	movement protein binding protein 2C;(source:Araport11)
AT5G08130.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix-loop-helix (bHLH) family protein BIM1 (BES1-INTERACTING MYC-LIKE 1), involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G08150.1	protein_coding	suppressor of phytochrome b 5	Encodes SOB5.  Activation tagging lines accumulated higher level of cytokinin.	suppressor of phytochrome b 5;(source:Araport11)
AT5G13360.1	protein_coding	Auxin-responsive GH3 family protein		Auxin-responsive GH3 family protein;(source:Araport11)
AT5G13450.1	protein_coding	delta subunit of Mt ATP synthase		delta subunit of Mt ATP synthase;(source:Araport11)
AT5G13370.1	protein_coding	Auxin-responsive GH3 family protein	IBA - specific acyl acid amido synthetase which conjugates glutamine to IBA. It is involved in generating inactive and/or storage forms of IBA in the seedling, root, and silique. May play a role in auxin homeostasis by modulating the levels of IBA for peroxisomal conversion to IAA.	Auxin-responsive GH3 family protein;(source:Araport11)
AT5G13460.1	protein_coding	IQ-domain 11	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 11;(source:Araport11)
AT5G13380.1	protein_coding	Auxin-responsive GH3 family protein		Auxin-responsive GH3 family protein;(source:Araport11)
AT5G13390.1	protein_coding	no exine formation 1	Required for normal pollen development and lipid accumulation within the tapetum	no exine formation 1;(source:Araport11)
AT5G13400.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G13410.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein		FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT5G13420.1	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT5G13430.1	protein_coding	Ubiquinol-cytochrome C reductase iron-sulfur subunit		Ubiquinol-cytochrome C reductase iron-sulfur subunit;(source:Araport11)
AT5G13440.1	protein_coding	Ubiquinol-cytochrome C reductase iron-sulfur subunit		Ubiquinol-cytochrome C reductase iron-sulfur subunit;(source:Araport11)
AT5G02600.1	protein_coding	Heavy metal transport/detoxification superfamily protein 	Encodes a phloem mobile metal binding protein necessary for phloem function and root meristem maintenance.	Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G02510.1	protein_coding			UDP-glucose 6-dehydrogenase;(source:Araport11)
AT5G02520.1	protein_coding		Arabidopsis KNL2 localizes at chromocenters during all stages of the mitotic cell cycle, except from metaphase to mid-anaphase, and its level is strictly regulated by the proteasome degradation pathway. Knockout of KNL2 via a T-DNA insertion resulted in a reduced amount of centromeric cenH3, mitotic and meiotic abnormalities, and reduced growth and fertility.	dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G02610.1	protein_coding	Ribosomal L29 family protein 		Ribosomal L29 family protein;(source:Araport11)
AT5G02530.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G02620.1	protein_coding	ankyrin-like1	Encodes a member of the ankyrin repeat protein.  Localized in the endoplasmic reticulum.	ankyrin-like1;(source:Araport11)
AT5G02540.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G02630.1	protein_coding	Lung seven transmembrane receptor family protein		Lung seven transmembrane receptor family protein;(source:Araport11)
AT5G02550.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G02640.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G02480.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT5G02560.1	protein_coding	histone H2A 12	Encodes HTA12, a histone H2A protein.	histone H2A 12;(source:Araport11)
AT5G02650.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G02490.1	protein_coding	Heat shock protein 70 (Hsp 70) family protein		Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT5G02570.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT5G02660.1	protein_coding	Protein with domains of unknown function (DUF627 and DUF629)		ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629);(source:Araport11)
AT5G02500.1	protein_coding	heat shock cognate protein 70-1	encodes a member of heat shock protein 70 family.	heat shock cognate protein 70-1;(source:Araport11)
AT5G02580.1	protein_coding	Plant protein 1589 of unknown function		argininosuccinate lyase;(source:Araport11)
AT5G02670.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G02590.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G11760.1	protein_coding			stress response protein;(source:Araport11)
AT5G11680.1	protein_coding			classical AGP protein;(source:Araport11)
AT5G11770.1	protein_coding	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial		NADH-ubiquinone oxidoreductase 20 kDa subunit;(source:Araport11)
AT5G11690.1	protein_coding	translocase inner membrane subunit 17-3	mitochondrial inner membrane translocase	translocase inner membrane subunit 17-3;(source:Araport11)
AT5G11780.1	protein_coding			SNF2 domain protein;(source:Araport11)
AT5G11700.1	protein_coding			ephrin type-B receptor;(source:Araport11)
AT5G11790.1	protein_coding	N-MYC downregulated-like 2		N-MYC downregulated-like 2;(source:Araport11)
AT5G11800.1	protein_coding	K+ efflux antiporter 6	member of Putative potassium proton antiporter family	K+ efflux antiporter 6;(source:Araport11)
AT5G11620.1	protein_coding	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related		SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-like protein;(source:Araport11)
AT5G11710.1	protein_coding	ENTH/VHS family protein	EPSIN1 plays an important role in the vacuolar trafficking of soluble proteins at the trans-Golgi network  via its interaction with gamma-ADR, VTI11, VSR1, and clathrin. Associated  with actin filaments and with the Golgi complex. Expressed in most tissues. The mRNA is cell-to-cell mobile.	ENTH/VHS family protein;(source:Araport11)
AT5G11630.1	protein_coding		The mutant is insensitive to oxylipin 9-HOT treatment. Involved in plant defense.	hypothetical protein;(source:Araport11)
AT5G11720.1	protein_coding	Glycosyl hydrolases family 31  protein		Glycosyl hydrolases family 31 protein;(source:Araport11)
AT5G11640.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT5G11730.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G11650.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G11740.1	protein_coding	arabinogalactan protein 15	Encodes arabinogalactan protein (AGP15). The mRNA is cell-to-cell mobile.	arabinogalactan protein 15;(source:Araport11)
AT5G11660.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT5G11750.1	protein_coding	Ribosomal protein L19 family protein		Ribosomal protein L19 family protein;(source:Araport11)
AT5G11670.1	protein_coding	NADP-malic enzyme 2	The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME2 is presumably a cytosolic enzyme involved in malate metabolism and possibly assisting the oxidative pentose phosphate pathway. AtNADP-ME2 counts for the major part of NADP-ME activity in mature tissues of Arabidopsis.	NADP-malic enzyme 2;(source:Araport11)
AT5G28110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28120.1);(source:TAIR10)
AT5G28120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28110.1);(source:TAIR10)
AT5G28130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04155.1);(source:TAIR10)
AT5G28140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT5G28150.1	protein_coding	Plant protein of unknown function (DUF868)		hypothetical protein (DUF868);(source:Araport11)
AT5G28160.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G28080.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.	Protein kinase superfamily protein;(source:Araport11)
AT5G28090.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G28100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.8e-134 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G19220.1	protein_coding	ADP glucose pyrophosphorylase large subunit 1	Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis.  The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.	ADP glucose pyrophosphorylase large subunit 1;(source:Araport11)
AT5G19140.1	protein_coding	Aluminium induced protein with YGL and LRDR motifs		aluminum induced protein with YGL and LRDR motifs;(source:Araport11)
AT5G19230.1	protein_coding	Glycoprotein membrane precursor GPI-anchored		Glycoprotein membrane precursor GPI-anchored;(source:Araport11)
AT5G19150.1	protein_coding	pfkB-like carbohydrate kinase family protein	AT5G19150 is a dehydratase that converts (S)-NAD(P)HX to NAD(P)H.	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT5G19240.1	protein_coding	Glycoprotein membrane precursor GPI-anchored		Glycoprotein membrane precursor GPI-anchored;(source:Araport11)
AT5G19160.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 11	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 11;(source:Araport11)
AT5G19250.1	protein_coding	Glycoprotein membrane precursor GPI-anchored		Glycoprotein membrane precursor GPI-anchored;(source:Araport11)
AT5G19170.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT5G19180.1	protein_coding	E1 C-terminal related 1	Encodes a subunit of a RUB-activating enzyme analogous to the E1 ubiquitin-activating enzyme. ECR1 functions as a heterodimer with AXR1 to activate RUB, a ubiquitin-related protein.	E1 C-terminal related 1;(source:Araport11)
AT5G19190.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G19120.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G19200.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes one of the Arabidopsis proteins (At3g06060/TSC10A and At5g19200/TSC10B) with significant similarity to the yeast 3-ketodihydrosphinganine (3-KDS) reductase, Tsc10p.  Both TSC10A and TSC10B are bona fide 3-KDS reductase as shown by complementation experiment in yeast.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G19130.1	protein_coding	GPI transamidase component family protein / Gaa1-like family protein		GPI transamidase component family protein / Gaa1-like family protein;(source:Araport11)
AT5G19210.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G12840.1	protein_coding	nuclear factor Y, subunit A1	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	nuclear factor Y, subunit A1;(source:Araport11)
AT5G12850.1	protein_coding	CCCH-type zinc finger protein with ARM repeat domain		CCCH-type zinc finger protein with ARM repeat domain-containing protein;(source:Araport11)
AT5G12930.1	protein_coding			inactive rhomboid protein;(source:Araport11)
AT5G12940.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G12860.1	protein_coding	dicarboxylate transporter 1	AtpOMT1 encodes dicarboxylate transporter functions both as as an oxaloacetate/malate  transporter and as a 2-oxoglutarate/malate transporter.	dicarboxylate transporter 1;(source:Araport11)
AT5G12870.1	protein_coding	myb domain protein 46	Encodes MYB46, member of the R2R3 factor gene family. Modulates Disease Susceptibility to Botrytis cinerea.	myb domain protein 46;(source:Araport11)
AT5G12950.1	protein_coding	Putative glycosyl hydrolase of unknown function (DUF1680)		proline-tRNA ligase (DUF1680);(source:Araport11)
AT5G12880.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT5G12960.1	protein_coding	Putative glycosyl hydrolase of unknown function (DUF1680)		proline-tRNA ligase (DUF1680);(source:Araport11)
AT5G12890.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G12970.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein		Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein;(source:Araport11)
AT5G12900.1	protein_coding			DNA double-strand break repair RAD50 ATPase;(source:Araport11)
AT5G12980.1	protein_coding	Cell differentiation, Rcd1-like protein		Cell differentiation, Rcd1-like protein;(source:Araport11)
AT5G12910.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT5G12990.1	protein_coding	CLAVATA3/ESR-RELATED 40	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 40;(source:Araport11)
AT5G12920.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G13000.1	protein_coding	glucan synthase-like 12	encodes a gene similar to callose synthase	glucan synthase-like 12;(source:Araport11)
AT5G13010.1	protein_coding	RNA helicase family protein	Encodes a nuclear localized DEAH-box containing protein that is involved in miRNA biogenesis. Loss of function mutants are embryo lethal. Gene silencing experiments demonstrated its role in the localization of DCL-1 and HYL1 to the nuclear D-body. In silenced lines, miRNA production is suppressed and plants have developmental abnormalities and are hypersensitive to fungal pathogens.	RNA helicase family protein;(source:Araport11)
AT5G35130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, predicted proteins from different species;(source:TAIR10)
AT5G35220.1	protein_coding	Peptidase M50 family protein	Membrane-associated and ATP-independent metalloprotease; EGY1 protein contains eight trans-membrane domains at its C-terminus, and carries out beta-casein degradation in an ATP-independent manner. EGY1 is required for development of both thylakoid grana and a well-organized lamellae system in chloroplast. Additionally, EGY1 is required for the accumulation of chlorophyll and chlorophyll a/b binding (CAB) proteins (both PS I and PS II) in chloroplast membranes, and for grana formation and normal chloroplast development. Loss of EGY1 function also has an effect on endodermal plastid biogenesis. Mutant studies suggest that EGY1 is involved in the regulation of nuclear gene expression response to ammonium stress and interacts with ABA signaling.	Peptidase M50 family protein;(source:Araport11)
AT5G35140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.4e-23 P-value blast match to At1g36190.1/92-340 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G35230.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G35150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.6e-26 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G35240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative transposable element,  blastp match of 47%25 identity and 9.3e-52 P-value to GP|13122426|dbj|BAB32907.1||AP003047 putative transposable element {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT5G35160.1	protein_coding	Endomembrane protein 70 protein family		Endomembrane protein 70 protein family;(source:Araport11)
AT5G35250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07450.1);(source:TAIR10)
AT5G35170.1	protein_coding	adenylate kinase family protein		adenylate kinase family protein;(source:Araport11)
AT5G35260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT4G07440.1);(source:TAIR10)
AT5G35180.1	protein_coding	Protein of unknown function (DUF1336)		ENHANCED DISEASE RESISTANCE protein (DUF1336);(source:Araport11)
AT5G35270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to cytochrome P-450 aromatase-related [Arabidopsis thaliana] (TAIR:AT4G07435.1);(source:TAIR10)
AT5G35190.1	protein_coding	proline-rich extensin-like family protein		proline-rich extensin-like family protein;(source:Araport11)
AT5G35200.1	protein_coding	ENTH/ANTH/VHS superfamily protein		ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT5G35210.1	protein_coding	metalloendopeptidases;zinc ion binding;DNA binding	Encodes a chloroplast envelope-bound plant homeodomain (PHD) transcription factor with transmembrane domains that functions in multiple retrograde signal pathways. The proteolytic cleavage of PTM occurs in response to retrograde signals and amino-terminal PTM accumulates in the nucleus, where it activates ABI4 transcription in a PHD-dependent manner associated with histone modifications.	PHD type transcription factor with transmembrane domain protein (PTM);(source:Araport11)
AT5G37430.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein (DUF577);(source:Araport11)
AT5G37440.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G37450.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G37460.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein (DUF577);(source:Araport11)
AT5G37470.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein (DUF577);(source:Araport11)
AT5G37390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1);(source:TAIR10)
AT5G37410.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein (DUF577);(source:Araport11)
AT5G37400.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein (DUF577);(source:Araport11)
AT5G37420.1	protein_coding	Family of unknown function (DUF577)	Note that previous reports (Plant Cell 2003,15:1538; PNAS 2003, 100:13407) have incorrectly named AT5G37420 as AGL105. AT5G37415 has now been named as AGL105 based on Plant Cell 2003, 15:1538 where the GenBank accession number given for AGL105 is AY141227 (Supplemental Table 3), which corresponds to AT5G37415.	hypothetical protein (DUF577);(source:Araport11)
AT5G35280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07310.1);(source:TAIR10)
AT5G35370.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT5G35380.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT5G35300.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G35390.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes a member of the receptor-like kinase family of genes. In pollen tubes, it accumulates in the plasma membrane of the apical growing tip through the process of exocytosis.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G35400.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT5G35320.1	protein_coding			DBH-like monooxygenase;(source:Araport11)
AT5G35330.1	protein_coding	methyl-CPG-binding domain protein 02	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain protein 02;(source:Araport11)
AT5G35340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G35360.1	protein_coding	acetyl Co-enzyme a carboxylase biotin carboxylase subunit	Encodes biotin carboxylase subunit (CAC2).	acetyl Co-enzyme a carboxylase biotin carboxylase subunit;(source:Araport11)
AT5G28500.1	protein_coding			rubisco accumulation factor-like protein;(source:Araport11)
AT5G28510.1	protein_coding	beta glucosidase 24		beta glucosidase 24;(source:Araport11)
AT5G28520.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT5G28530.1	protein_coding	FAR1-related sequence 10		FAR1-related sequence 10;(source:Araport11)
AT5G28540.1	protein_coding	heat shock protein 70 (Hsp 70) family protein	Encodes the luminal binding protein BiP, an ER-localized member of the HSP70 family.  BiP is composed of an N-terminal ATP binding domain and a C-terminal domain that binds to hydrophobic patches on improperly/incompletely folded proteins in an ATP-dependent manner. Involved in polar nuclei fusion during proliferation of endosperm nuclei.	heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT5G07160.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT5G07170.1	protein_coding	Cell cycle regulated microtubule associated protein		Cell cycle regulated microtubule associated protein;(source:Araport11)
AT5G07260.1	protein_coding	START (StAR-related lipid-transfer) lipid-binding domain		START (StAR-related lipid-transfer) lipid-binding domain-containing protein;(source:Araport11)
AT5G07180.1	protein_coding	ERECTA-like 2	Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.  It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.	ERECTA-like 2;(source:Araport11)
AT5G07270.1	protein_coding	XB3 ortholog 3 in Arabidopsis thaliana		hypothetical protein;(source:Araport11)
AT5G07190.1	protein_coding	seed gene 3	Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.	embryo-specific protein 3;(source:Araport11)
AT5G07200.1	protein_coding	gibberellin 20-oxidase 3	encodes a gibberellin 20-oxidase.	gibberellin 20-oxidase 3;(source:Araport11)
AT5G07120.1	protein_coding	sorting nexin 2B	Encodes sorting nexin SNX2b. SNX2b is peripherally associated with membranes.  Involved in vesicular trafficking from endosomes to the vacuole.	sorting nexin 2B;(source:Araport11)
AT5G07210.1	protein_coding	response regulator 21	member of Response Regulator: B- Type	response regulator 21;(source:Araport11)
AT5G07130.1	protein_coding	laccase 13	putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	laccase 13;(source:Araport11)
AT5G07220.1	protein_coding	BCL-2-associated athanogene 3	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	BCL-2-associated athanogene 3;(source:Araport11)
AT5G07140.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G07230.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G07150.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G07240.1	protein_coding	IQ-domain 24	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 24;(source:Araport11)
AT5G07250.1	protein_coding	RHOMBOID-like protein 3		RHOMBOID-like protein 3;(source:Araport11)
AT5G18540.1	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT5G18550.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G18560.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes PUCHI, a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  PUCHI is required for morphogenesis in the early lateral root primordium of Arabidopsis. Expressed in early floral meristem (stage 1 to 2). Required for early floral meristem growth and for bract suppression. Triple mutant with bop1 and bop2 displays a strong defect in the determination of floral meristem identity with reduced LFY expression and the lack of AP1 expression.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G18570.1	protein_coding	GTP1/OBG family protein	Encodes AtObgC, a plant ortholog of bacterial Obg.  AtObgC is a chloroplast-targeting GTPase essential for early embryogenesis. Mutations in this locus result in embryo lethality. The protein is  dually localized in the stroma and the inner envelope membrane and is involved in thylakoid membrane biogenesis and functions primarily in plastid ribosome biogenesis during chloroplast development.	GTP1/OBG family protein;(source:Araport11)
AT5G18580.1	protein_coding	tonneau 2 (TON2)	fass mutants have aberrant cell shapes due to defects in arrangement of cortical microtubules.  Encodes a protein highly conserved in higher plants and similar in its C-terminal part to B' regulatory subunits of type 2A protein phosphatases.  Interacts with an Arabidopsis type A  subunit of PP2A in the yeast two-hybrid system.	tonneau 2 (TON2);(source:Araport11)
AT5G33220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23710.1);(source:TAIR10)
AT5G33230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28960.1);(source:TAIR10)
AT5G33240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42980.1);(source:TAIR10)
AT5G33250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, predicted proteins - Arabidopsis thaliana;(source:TAIR10)
AT5G33260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, predicted proteins - Arabidopsis thaliana;(source:TAIR10)
AT5G33270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OSJNBb0043H09.1, predicted proteins - Arabidopsis thaliana;(source:TAIR10)
AT5G33200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42400.1);(source:TAIR10)
AT5G33210.1	protein_coding	SHI-related sequence 8	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. SRS8 is a putative pseudogene.	SHI-related sequence 8;(source:Araport11)
AT5G19590.1	protein_coding	Protein of unknown function, DUF538		DUF538 family protein (Protein of unknown function, DUF538);(source:Araport11)
AT5G19600.1	protein_coding	sulfate transporter 3;5	Encodes sulfate transporter Sultr3;5.	sulfate transporter 3;(source:Araport11)
AT5G19680.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G19690.1	protein_coding	staurosporin and temperature sensitive 3-like A	encodes an oligosaccharyl transferase involved response to high salt. Mutants are hypersensitive to high salt conditions The mRNA is cell-to-cell mobile.	staurosporin and temperature sensitive 3-like A;(source:Araport11)
AT5G19780.1	protein_coding	tubulin alpha-5	Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication. The mRNA is cell-to-cell mobile.	tubulin alpha-5;(source:Araport11)
AT5G19610.1	protein_coding	GNOM-like 2		GNOM-like 2;(source:Araport11)
AT5G19620.1	protein_coding	outer envelope protein of 80 kDa	AtOEP80 is paralog to the chloroplastic protein translocation  channel Toc75. Mutations in this locus result in embryo lethality.	outer envelope protein of 80 kDa;(source:Araport11)
AT5G19700.1	protein_coding	MATE efflux family protein	Encodes a MATE transporter involved in leaf senescence and iron homeostasis.	MATE efflux family protein;(source:Araport11)
AT5G19790.1	protein_coding	related to AP2 11	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	related to AP2 11;(source:Araport11)
AT5G19630.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G19710.1	protein_coding			histidine containing phosphotransfer protein;(source:Araport11)
AT5G19800.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G19640.1	protein_coding	Major facilitator superfamily protein	Influences leaf N export via sink-to-source feedback, perhaps via a role in sensing plant internal N-status. Necessary for normal leaf N export under low N.	Major facilitator superfamily protein;(source:Araport11)
AT5G19720.1	protein_coding	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain		Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein;(source:Araport11)
AT5G19810.1	protein_coding	Proline-rich extensin-like family protein		Proline-rich extensin-like family protein;(source:Araport11)
AT5G19650.1	protein_coding	ovate family protein 8		ovate family protein 8;(source:Araport11)
AT5G19730.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G19820.1	protein_coding	ARM repeat superfamily protein	Encodes an importin that transports HYL1, a component of the microprocessor, from the cytoplasm to the nucleus to constitute functional microprocessor, thereby affecting miRNA processing. Knockdown amiR mutants significantly reduced nuclear portion of HYL1 protein and correspondingly compromised the pri-miRNA processing in the nucleus.	ARM repeat superfamily protein;(source:Araport11)
AT5G19660.1	protein_coding	SITE-1 protease	S1P appears to function as a Golgi-localized subtilase and to help protect seedlings against salt and osmotic stress. The roots of s1p-3 mutants are hypersensitive to NaCl, KCl, LiCl, and mannitol. Several salt-stress responsive genes show weaker induction in an s1P-3 mutant background. The proteolytic cleavage of the bZIP17 transcription factor depends on S1P in vitro. And there is evidence that S1P can cleave bZIP17 in vitro.	SITE-1 protease;(source:Araport11)
AT5G19740.1	protein_coding	Peptidase M28 family protein	LAMP is an AMP paralog that overlaps in expression within the vascular system. Along with LAMP it suppresses meristem activity within the peripheral zone of the shoot apical meristem. LAMP is localized to the endoplasmic reticulum.	Peptidase M28 family protein;(source:Araport11)
AT5G19830.1	protein_coding	Peptidyl-tRNA hydrolase family protein		Peptidyl-tRNA hydrolase family protein;(source:Araport11)
AT5G19670.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT5G19750.1	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT5G19840.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G19760.1	protein_coding	Mitochondrial substrate carrier family protein	Encodes a novel mitochondrial carrier capable of transporting both dicarboxylates (such as malate, oxaloacetate, oxoglutarate, and maleate) and tricarboxylates (such as citrate, isocitrate, cis-aconitate, and trans-aconitate).	Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G19770.1	protein_coding	tubulin alpha-3	tubulin 3	tubulin alpha-3;(source:Araport11)
AT5G07300.1	protein_coding	Calcium-dependent phospholipid-binding Copine family protein	Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms.	Calcium-dependent phospholipid-binding Copine family protein;(source:Araport11)
AT5G07310.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G07390.1	protein_coding	respiratory burst oxidase homolog A		respiratory burst oxidase homolog A;(source:Araport11)
AT5G07320.1	protein_coding	Mitochondrial substrate carrier family protein	Encodes an APC isoform in Arabidopsis, a calcium-dependent mitochondrial ATP-Mg/Pi transporter.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G07400.1	protein_coding	forkhead-associated domain-containing protein / FHA domain-containing protein		forkhead-associated domain-containing protein / FHA domain-containing protein;(source:Araport11)
AT5G07490.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G07330.1	protein_coding			NFU1 iron-sulfur cluster protein;(source:Araport11)
AT5G07410.1	protein_coding	Pectin lyase-like superfamily protein	Encodes a pectin methylesterase implicated in the remodeling of pectins in pollen.  Its expression is restricted to the male gametophyte (dry pollen, imbibed pollen and pollen tube). Mutants do not display any phenotype in the vegetative tissues. Pollen germination of KO mutant is strongly delayed in vivo and in vitro. Extra calcium restores the wild type phenotype in vitro.	Pectin lyase-like superfamily protein;(source:Araport11)
AT5G07500.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein	Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G07340.1	protein_coding	Calreticulin family protein		Calreticulin family protein;(source:Araport11)
AT5G07420.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G07510.1	protein_coding	glycine-rich protein 14	encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers.	glycine-rich protein 14;(source:Araport11)
AT5G07350.1	protein_coding	TUDOR-SN protein 1	RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting  on mRNAs entering the secretory pathway. Functionally redundant with TSN2.	TUDOR-SN protein 1;(source:Araport11)
AT5G07430.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G07520.1	protein_coding	glycine-rich protein 18	encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12).	glycine-rich protein 18;(source:Araport11)
AT5G07360.1	protein_coding	Amidase family protein		Amidase family protein;(source:Araport11)
AT5G07440.1	protein_coding	glutamate dehydrogenase 2	Encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.	glutamate dehydrogenase 2;(source:Araport11)
AT5G07530.1	protein_coding	glycine rich protein 17	encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat.	glycine rich protein 17;(source:Araport11)
AT5G07370.1	protein_coding	inositol polyphosphate kinase 2 alpha	Encodes inositol polyphosphate kinase, which phosphorylates inositol 1,4,5-triphosphate and inositol 1,3,4,5-tetrakisphosphate to generate inositol 1,3,4,5,6-pentakisphosphate. Acts redundantly with ATIPK2beta during pollen   development, pollen tube guidance and embryogenesis. The mRNA is cell-to-cell mobile.	inositol polyphosphate kinase 2 alpha;(source:Araport11)
AT5G07450.1	protein_coding	cyclin p4;3		cyclin p4;(source:Araport11)
AT5G07540.1	protein_coding	glycine-rich protein 16	encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12).	glycine-rich protein 16;(source:Araport11)
AT5G07380.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G07460.1	protein_coding	peptidemethionine sulfoxide reductase 2	ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness.	peptidemethionine sulfoxide reductase 2;(source:Araport11)
AT5G07550.1	protein_coding	glycine-rich protein 19	member of Oleosin-like protein family	glycine-rich protein 19;(source:Araport11)
AT5G07470.1	protein_coding	peptidemethionine sulfoxide reductase 3	ubiquitous enzyme that repairs oxidatively damaged proteins	peptidemethionine sulfoxide reductase 3;(source:Araport11)
AT5G07560.1	protein_coding	glycine-rich protein 20	Lipid-binding oleosins, glycine-rich protein.	glycine-rich protein 20;(source:Araport11)
AT5G07480.1	protein_coding	KAR-UP oxidoreductase 1		KAR-UP oxidoreductase 1;(source:Araport11)
AT5G07570.1	protein_coding	glycine/proline-rich protein		glycine/proline-rich protein;(source:Araport11)
AT5G34950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05084.1);(source:TAIR10)
AT5G34880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.2e-11 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G34960.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14450.1);(source:TAIR10)
AT5G34890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-81 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G34970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43390.1);(source:TAIR10)
AT5G34900.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1);(source:TAIR10)
AT5G34910.1	pseudogene		pseudogene of hypothetical protein	pseudogene of PttA/En/Spm family plant transposase;(source:Araport11)
AT5G34920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.2e-40 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G34930.1	protein_coding	arogenate dehydrogenase		arogenate dehydrogenase;(source:Araport11)
AT5G34860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06908.1);(source:TAIR10)
AT5G34940.1	protein_coding	glucuronidase 3	The protein is predicted  (WoLF PSORT program) to be membrane-associated.	glucuronidase 3;(source:Araport11)
AT5G34870.1	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT5G36300.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G36220.1	protein_coding	cytochrome p450 81d1	member of CYP81D family of cytochrome p450s. This gene was originally called CYP91A1, but was later renamed to CYP81D1.	cytochrome p450 81d1;(source:Araport11)
AT5G36230.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G36240.1	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT5G36250.1	protein_coding	Protein phosphatase 2C family protein	Encodes a myristoylated 2C-type protein phosphatase that interacts with  the catalytic subunit of SnRK1. The mRNA is cell-to-cell mobile.	Protein phosphatase 2C family protein;(source:Araport11)
AT5G36260.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G36270.1	pseudogene		Annotated as pseudogene of dehydroascorbate reductase. Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of dehydroascorbate reductase 2;(source:Araport11)
AT5G36280.1	protein_coding			acyl carrier protein;(source:Araport11)
AT5G36290.1	protein_coding	Uncharacterized protein family (UPF0016)		Uncharacterized protein family (UPF0016);(source:Araport11)
AT5G10830.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G10840.1	protein_coding	Endomembrane protein 70 protein family		Endomembrane protein 70 protein family;(source:Araport11)
AT5G10930.1	protein_coding	CBL-interacting protein kinase 5	Encodes CBL-interacting protein kinase 5 (CIPK5).	CBL-interacting protein kinase 5;(source:Araport11)
AT5G10850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1);(source:TAIR10)
AT5G10770.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G10860.1	protein_coding	Cystathionine beta-synthase (CBS) family protein	Encodes a single cystathionine beta-Synthase domain-containing protein. Modulates development by regulating the thioredoxin system.	Cystathionine beta-synthase (CBS) family protein;(source:Araport11)
AT5G10780.1	protein_coding			ER membrane protein complex subunit-like protein;(source:Araport11)
AT5G10870.1	protein_coding	chorismate mutase 2	Encodes chorismate mutase AtCM2.	chorismate mutase 2;(source:Araport11)
AT5G10790.1	protein_coding	ubiquitin-specific protease 22	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 22;(source:Araport11)
AT5G10880.1	protein_coding	tRNA synthetase-related / tRNA ligase-related		tRNA synthetase-related / tRNA ligase-like protein;(source:Araport11)
AT5G10800.1	protein_coding	RNA recognition motif (RRM)-containing protein		RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT5G10890.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT5G10810.1	protein_coding	enhancer of rudimentary protein, putative	enhancer of rudimentary homolog ATER	enhancer of rudimentary protein;(source:Araport11)
AT5G10900.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT5G10820.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G10910.1	protein_coding	mraW methylase family protein		mraW methylase family protein;(source:Araport11)
AT5G10920.1	protein_coding	L-Aspartase-like family protein		L-Aspartase-like family protein;(source:Araport11)
AT5G13250.1	protein_coding	RING finger protein		RING finger protein;(source:Araport11)
AT5G13260.1	protein_coding			myosin;(source:Araport11)
AT5G13270.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes RARE1 (Required for accD RNA Editing 1), a trans-factor essential for C-to-U editing of the chloroplast accD transcript. RARE1 carries 15 PPR (pentatricopeptide repeat) motifs, an E/E+ and a DYW domain (C-terminal tripeptide).	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G13280.1	protein_coding	aspartate kinase 1	Asp kinase inhibited by Lys and S-adenosylmethionine. Contains regulatory domains that belong to the ACT domain family, which allow binding to a extreme variety  of ligands. Can function as a monomer or as a dimer with acetohydroxyacid synthase (HSDH).	aspartate kinase 1;(source:Araport11)
AT5G13290.1	protein_coding	Protein kinase superfamily protein	Encodes a protein with predicted Ser/Thr kinase activity and membrane localization that is involved in the CLV3 signaling pathway that represses WUS expression in the meristem. Loss of function of CRN can suppress the phenotype caused by overexpression of CLV3. SOL2 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol2 partially suppresses the short root phenotype caused  by CLE19 overexpression. Mutant flowers have extra carpels.	Protein kinase superfamily protein;(source:Araport11)
AT5G13210.1	protein_coding	Uncharacterised conserved protein UCP015417,  vWA		Uncharacterized conserved protein UCP015417, vWA;(source:Araport11)
AT5G13300.1	protein_coding	ARF GTPase-activating protein	Belongs to 15-member small GTPase gene family, ARF-GAP domain proteins (AGD); corresponds to AGD3, and is one of four proteins belonging to class 1, together with AGD1, AGD2 and AGD4. The protein contains four domains: BAR domain, PH domain, an ARF-GAP domain, and two Ankyrin repeats. In sfc mutants, the secondary and tertiary veins of cotyledons, leaves, sepals and petals are largely replaced by small segments of discontinuous veins. sfc mutants have exaggerated responses to auxin.	ARF GTPase-activating protein;(source:Araport11)
AT5G13220.1	protein_coding	jasmonate-zim-domain protein 10	Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.	jasmonate-zim-domain protein 10;(source:Araport11)
AT5G13230.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G24450.1	protein_coding	Transcription factor IIIC, subunit 5		Transcription factor IIIC, subunit 5;(source:Araport11)
AT5G24460.1	protein_coding			RING-H2 zinc finger protein;(source:Araport11)
AT5G24470.1	protein_coding	pseudo-response regulator 5	Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. Acts as transcriptional repressor of CCA1 and LHY.	two-component response regulator-like protein;(source:Araport11)
AT5G24480.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT5G24490.1	protein_coding	30S ribosomal protein, putative		30S ribosomal protein;(source:Araport11)
AT5G10010.1	protein_coding			myosin-H heavy protein;(source:Araport11)
AT5G10020.1	protein_coding	Leucine-rich receptor-like protein kinase family protein		Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT5G10100.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G10110.1	protein_coding			DNA-directed RNA polymerase subunit beta;(source:Araport11)
AT5G10030.1	protein_coding	TGACG motif-binding factor 4	Encodes a member of basic leucine zipper transcription gene family.  Nomenclature according to Xiang, et al. (1997).	TGACG motif-binding factor 4;(source:Araport11)
AT5G10040.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G10120.1	protein_coding	Ethylene insensitive 3 family protein		Ethylene insensitive 3 family protein;(source:Araport11)
AT5G10050.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G10130.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G10060.1	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT5G10140.1	protein_coding	K-box region and MADS-box transcription factor family protein 	MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3? to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G10070.1	protein_coding	RNase L inhibitor protein-related		RNase L inhibitor protein-like protein;(source:Araport11)
AT5G10150.1	protein_coding	Domain of unknown function (DUF966)	SOK2 is a DUF966 domain containing protein of unknown function. Expressed in discrete domains of the PM. In root endodermis and embryo, expression is in inner basal edges  and in basal	UPSTREAM OF FLC protein (DUF966);(source:Araport11)
AT5G10080.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G10160.1	protein_coding	Thioesterase superfamily protein		Thioesterase superfamily protein;(source:Araport11)
AT5G10090.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G10170.1	protein_coding	myo-inositol-1-phosphate synthase 3	myo-inositol-1-phosphate synthase isoform 3.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	myo-inositol-1-phosphate synthase 3;(source:Araport11)
AT5G10180.1	protein_coding	slufate transporter 2;1	Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation.  Expression in the shoot vascular system is not induced by sulfur starvation.	slufate transporter 2;(source:Araport11)
AT5G28790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT5G28720.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G28810.1	protein_coding	Domain of unknown function (DUF1985)		Ulp1 protease family protein;(source:Araport11)
AT5G28730.1	protein_coding			nuclease;(source:Araport11)
AT5G28820.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT5G28740.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G28750.1	protein_coding	Bacterial sec-independent translocation protein mttA/Hcf106		Bacterial sec-independent translocation protein mttA/Hcf106;(source:Araport11)
AT5G28760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27160.1);(source:TAIR10)
AT5G28770.1	protein_coding	bZIP transcription factor family protein	BASIC LEUCINE ZIPPER protein which regulates the circadian oscillator gene PSEUDO RESPONSE REGULATOR7 (PRR7) to change the circadian phase in response to sugars. It upregulates PRR7 in response to low energy. bZIP63 and PRR7 are required for correct oscillator phase under light/dark cycles. bZIP protein BZO2H3 mRNA, partial cds	bZIP transcription factor family protein;(source:Araport11)
AT5G28780.1	protein_coding	PIF1 helicase		PIF1 helicase;(source:Araport11)
AT5G04500.1	protein_coding	glycosyltransferase family protein 47	Encodes a member of the CAZy Glycosyltransferase Family 64 that is involved in glycosylinositolphosphorylceramide and sphingolipid glycosylation. In mutants, seed germination was less sensitive to salt stress than in wild-type plants. [The protein was expected to be Golgi-localized based on function as well as the Golgi localization of its homolog GMT1. However, GFP-fusion proteins localized both to the ER and Golgi, and especially to ER when co-expressed with Golgi markers. Therefore, localization cannot confidently be defined. (pers. communication, J. Mortimer)]	glycosyltransferase family protein 47;(source:Araport11)
AT5G04510.1	protein_coding	3'-phosphoinositide-dependent protein kinase 1	Encodes 3-phosphoinositide-dependent protein kinase that contains pleckstrin homology domain and binds 3-phosphoinositides.  It activates the protein kinase AGC2-1 in a phosphatidic acid dependent manner. Phosphorylates S6K1. Interacts with PID, and   transphosphorylation by PDK1 increases PID autophosphorylation. The mRNA is cell-to-cell mobile.	3-phosphoinositide-dependent protein kinase 1;(source:Araport11)
AT5G04520.1	protein_coding	Protein of unknown function DUF455		3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455);(source:Araport11)
AT5G04530.1	protein_coding	3-ketoacyl-CoA synthase 19	Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 19;(source:Araport11)
AT5G04540.1	protein_coding	Myotubularin-like phosphatases II superfamily		Myotubularin-like phosphatases II superfamily;(source:Araport11)
AT5G04550.1	protein_coding	Protein of unknown function (DUF668)		type-1 restriction enzyme mjaxp r protein (DUF668);(source:Araport11)
AT5G04560.1	protein_coding	HhH-GPD base excision DNA repair family protein	Encodes a DNA glycosylase DEMETER (DME).  Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene.  DME can excise 5-methylcytosine in vitro and when expressed in E. coli.  DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele.	HhH-GPD base excision DNA repair family protein;(source:Araport11)
AT5G04480.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a protein with sequence similarity to glycosyltransferases that is localized to the golgi apparatus and is involved in pollen tube development.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G04490.1	protein_coding	vitamin E pathway gene 5	Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis.	phytol kinase 1 VTE5;(source:Araport11)
AT5G34450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05087.1);(source:TAIR10)
AT5G34460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G34950.1);(source:TAIR10)
AT5G34770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 3.2e-131 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT5G34780.1	protein_coding	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein	Putative ketopantoate reductase (KPR). This enzyme is speculated to be the missing enzyme in the biosynthesis of pantothenate.	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein;(source:Araport11)
AT5G34790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.9e-11 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G34800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, predicted proteins - Arabidopsis thaliana;(source:TAIR10)
AT5G34810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, predicted proteins - Arabidopsis thaliana;(source:TAIR10)
AT5G34820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G20770.1);(source:TAIR10)
AT5G24740.1	protein_coding	Protein of unknown function (DUF1162)	Encodes a vacuolar sorting protein that interacts with the plant-specific GRAS family transcription factor SHORT-ROOT and acts in a pathway that controls root growth and radial patterning. It provides a connections between gibberellic acid, SHR and PLT signaling in the root.	vacuolar protein sorting-associated protein, putative (DUF1162);(source:Araport11)
AT5G24750.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G24760.1	protein_coding	GroES-like zinc-binding dehydrogenase family protein		GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G24770.1	protein_coding	vegetative storage protein 2	Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.	vegetative storage protein 2;(source:Araport11)
AT5G24780.1	protein_coding	vegetative storage protein 1	encodes an acid phosphatase similar to soybean vegetative storage proteins. Gene expression is induced by wounding and jasmonic acid.	vegetative storage protein 1;(source:Araport11)
AT5G24790.1	protein_coding	Protein of unknown function, DUF599		transmembrane protein, putative (Protein of unknown function, DUF599);(source:Araport11)
AT5G52520.1	protein_coding	Class II aaRS and biotin synthetases superfamily protein	Encodes a chloroplast and mitochondria localized prolyl-tRNA synthetase.	Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT5G52530.1	protein_coding	dentin sialophosphoprotein-related		dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G34850.1	protein_coding	purple acid phosphatase 26	Encodes a root-secreted purple acid phosphatase precursor involved in extracellular phosphate-scavenging.	purple acid phosphatase 26;(source:Araport11)
AT5G09300.1	protein_coding	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein		Thiamin diphosphate-binding fold (THDP-binding) superfamily protein;(source:Araport11)
AT5G09310.1	protein_coding		Encodes a gamma-secretase subunit.  Associates with other subunits in intracellular membrane compartments.	gamma-secretase subunit;(source:Araport11)
AT5G09400.1	protein_coding	K+ uptake permease 7	Encodes a potassium uptake permease with a functional adenylate cyclase (AC) center. The first 100 aa of this protein can complement AC-deficient E. coli and display AC activity in vitro. KUP7 is localized to the plasma membrane where it functions in potassium uptake and translocation.	K+ uptake permease 7;(source:Araport11)
AT5G09320.1	protein_coding	Vacuolar sorting protein 9 (VPS9) domain		vacuolar protein sorting-associated 9A-like protein;(source:Araport11)
AT5G09410.1	protein_coding	ethylene induced calmodulin binding protein	calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum)	ethylene induced calmodulin binding protein;(source:Araport11)
AT5G09330.1	protein_coding	NAC domain containing protein 82		NAC domain containing protein 82;(source:Araport11)
AT5G09500.1	protein_coding	Ribosomal protein S19 family protein		Ribosomal protein S19 family protein;(source:Araport11)
AT5G09420.1	protein_coding	translocon at the outer membrane of chloroplasts 64-V	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	translocon at the outer membrane of chloroplasts 64-V;(source:Araport11)
AT5G09340.1	protein_coding	Ubiquitin family protein		Ubiquitin family protein;(source:Araport11)
AT5G09510.1	protein_coding	Ribosomal protein S19 family protein		Ribosomal protein S19 family protein;(source:Araport11)
AT5G09430.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G09350.1	protein_coding	phosphatidylinositol 4-OH kinase beta2	Encodes a phosphatidylinositol 4-OH kinase, PI-4Kbeta2.  Arabidopsis contains 12 PI-4Ks in three separate families: PI-4Kalphs, PI-4kbeta, and PI-4Kgamma.  PI-4Kbeta2 is 83% identical to PI-4kbeta1 encoded by At5g64070.  Important for polarized root hair growth as the loss of this gene and its close relative PI-4kbeta1, leads to the formation of abnormal root hairs.	phosphatidylinositol 4-OH kinase beta2;(source:Araport11)
AT5G09440.1	protein_coding	EXORDIUM like 4		EXORDIUM like 4;(source:Araport11)
AT5G09280.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G09360.1	protein_coding	laccase 14	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	laccase 14;(source:Araport11)
AT5G09450.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G09290.1	protein_coding	Inositol monophosphatase family protein		Inositol monophosphatase family protein;(source:Araport11)
AT5G09370.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G09460.1	protein_coding	sequence-specific DNA binding transcription factors;transcription regulators		transcription factor bHLH143;(source:Araport11)
AT5G09380.1	protein_coding	RNA polymerase III RPC4		RNA polymerase III RPC4;(source:Araport11)
AT5G09470.1	protein_coding	dicarboxylate carrier 3	Encodes one of the mitochondrial dicarboxylate carriers (DIC): DIC1 (AT2G22500), DIC2 (AT4G24570), DIC3 (AT5G09470).	dicarboxylate carrier 3;(source:Araport11)
AT5G09390.1	protein_coding	CD2-binding protein-related		CD2-binding protein-like protein;(source:Araport11)
AT5G09480.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G09490.1	protein_coding	Ribosomal protein S19 family protein		Ribosomal protein S19 family protein;(source:Araport11)
AT5G11110.1	protein_coding	sucrose phosphate synthase 2F	Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.	sucrose phosphate synthase 2F;(source:Araport11)
AT5G11030.1	protein_coding	aberrant lateral root formation 4	alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.	aberrant root formation protein;(source:Araport11)
AT5G11040.1	protein_coding	TRS120	Encodes a tethering factor required for cell plate biogenesis.	TRS120;(source:Araport11)
AT5G11050.1	protein_coding	myb domain protein 64	Member of R2R3-MYB transcription factor gene family.	myb domain protein 64;(source:Araport11)
AT5G11060.1	protein_coding	KNOTTED1-like homeobox gene 4	A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.	homeobox protein knotted-1-like 4;(source:Araport11)
AT5G11070.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G11080.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G11090.1	protein_coding	serine-rich protein-related		serine-rich protein-like protein;(source:Araport11)
AT5G11100.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G13550.1	protein_coding	sulfate transporter 4.1	Encodes a sulfate transporter.	sulfate transporter 4.1;(source:Araport11)
AT5G13480.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time; affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G13490.1	protein_coding	ADP/ATP carrier 2	Encodes mitochondrial ADP/ATP carrier	ADP/ATP carrier 2;(source:Araport11)
AT5G13500.1	protein_coding			Hyp O-arabinosyltransferase-like protein;(source:Araport11)
AT5G13510.1	protein_coding	Ribosomal protein L10 family protein		Ribosomal protein L10 family protein;(source:Araport11)
AT5G13520.1	protein_coding	peptidase M1 family protein		peptidase M1 family protein;(source:Araport11)
AT5G13530.1	protein_coding	protein kinases;ubiquitin-protein ligases	Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling.  KEG is essential for Arabidopsis growth and development.  ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway.	protein kinases;(source:Araport11)
AT5G01960.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G02050.1	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT5G01970.1	protein_coding			unknown protein;(source:TAIR10)
AT5G02060.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT5G01980.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G02150.1	protein_coding	Fes1C	Encodes one of the Arabidopsis orthologs of the human Hsp70-binding protein 1 (HspBP-1) and yeast Fes1p: Fes1A (AT3G09350), Fes1B (AT3G53800), Fes1C (AT5G02150).	Fes1C;(source:Araport11)
AT5G02070.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT5G01990.1	protein_coding	Auxin efflux carrier family protein		Auxin efflux carrier family protein;(source:Araport11)
AT5G02160.1	protein_coding		Zinc-finger domain containing protein involved in abiotic stress response. Possesses an N-terminal transit peptide followed by a hydrophobic domain and a zinc-finger domain. Despite the presence of a zinc-finger domain (C4-type) with two CXXCXGXG conserved repeats, characteristic of DNAJ protein, the conserved J domain is absent in FIP. Interacts with FtsH5. Gene expression levels are reduced and negatively regulates stress response genes during stress conditions.	transmembrane protein;(source:Araport11)
AT5G02080.1	protein_coding	DNA / pantothenate metabolism flavoprotein		phosphopantothenate-cysteine ligase-like protein;(source:Araport11)
AT5G02000.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G02170.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT5G02090.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G02010.1	protein_coding	RHO guanyl-nucleotide exchange factor 7	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Involved in cell wall patterning. Encodes ROP activator, regulates the formation of ROP-activated domains; these in turn determine the pattern of cell wall pits. Required for periodic formation of secondary cell wall pits.	RHO guanyl-nucleotide exchange factor 7;(source:Araport11)
AT5G02180.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT5G02100.1	protein_coding	Oxysterol-binding family protein	Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.	Oxysterol-binding family protein;(source:Araport11)
AT5G02020.1	protein_coding		Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich).	E3 ubiquitin-protein ligase RLIM-like protein;(source:Araport11)
AT5G02190.1	protein_coding	Eukaryotic aspartyl protease family protein	encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G02110.1	protein_coding	CYCLIN D7;1	Encodes CYCLIN D7;1. Overexpression of CYCD7;1 induces cell proliferation and cell enlargement in the embryo and endosperm leading to overgrowth.	CYCLIN D7;(source:Araport11)
AT5G02030.1	protein_coding	POX (plant homeobox) family protein	Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element.  Its localization to the nucleus is dependent on the coexpression of either STM or BP.	POX (plant homeobox) family protein;(source:Araport11)
AT5G02200.1	protein_coding	far-red-elongated hypocotyl1-like	Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.	far-red-elongated hypocotyl1-like protein;(source:Araport11)
AT5G02120.1	protein_coding	one helix protein	Encodes a one helix protein homologous to cyanobacterial high-light inducible proteins.  The protein is localized to the thylakoid membrane and its transcript is transiently induced by exposure to high light conditions. The mRNA is cell-to-cell mobile.	one helix protein;(source:Araport11)
AT5G02040.1	protein_coding	prenylated RAB acceptor 1.A1		prenylated RAB acceptor 1.A1;(source:Araport11)
AT5G02210.1	protein_coding	GCK domain-containing protein		GCK domain-containing protein;(source:Araport11)
AT5G02130.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	SSR1 encodes a tetratricopeptide repeat- containing protein localized in mitochondria. It is involved in root development, possibly by through effects on auxin transport. In ssr1 mutants, the expression PIN genes and trafficking of PIN2 is altered which in turn affects distribution of auxin in the roots.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G02220.1	protein_coding			cyclin-dependent kinase inhibitor;(source:Araport11)
AT5G02140.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT5G02230.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G28310.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G28320.1	protein_coding			embryo defective protein;(source:Araport11)
AT5G28240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1);(source:TAIR10)
AT5G28330.1	pseudogene			pseudogene of RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G28250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G07240.1);(source:TAIR10)
AT5G28260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28480.1);(source:TAIR10)
AT5G28280.1	pseudogene			pseudogene of sterol desaturase domain-containing protein;(source:Araport11)
AT5G28290.1	protein_coding	NIMA-related kinase 3	Encodes AtNek3, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 3;(source:Araport11)
AT5G28300.1	protein_coding	Duplicated homeodomain-like superfamily protein	Encodes a Ca(2+)-dependent CaM-binding protein. AtGT2L specifically targets the nucleus and possesses both transcriptional activation and DNA-binding abilities, implicating its function as a nuclear transcription factor.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT5G35000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to At5g36850, At1g27780, At2g05560, At3g42730, At1g52020, At2g14770;(source:TAIR10)
AT5G35010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14774.1);(source:TAIR10)
AT5G35020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05300.1);(source:TAIR10)
AT5G34980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32312.1);(source:TAIR10)
AT5G34990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT5G14800.1	protein_coding	pyrroline-5- carboxylate (P5C) reductase	Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.	pyrroline-5- carboxylate (P5C) reductase;(source:Araport11)
AT5G14720.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G14810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);retrotransposon family;(source:TAIR10)
AT5G14730.1	protein_coding		Unknown protein, expression induced by IDL7 and stress.	hypothetical protein;(source:Araport11)
AT5G14820.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G14740.1	protein_coding	carbonic anhydrase 2	Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm.  Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.	carbonic anhydrase 2;(source:Araport11)
AT5G14830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);retrotransposon family;(source:TAIR10)
AT5G14750.1	protein_coding	myb domain protein 66	Encodes a MyB-related protein containing R2 and R3 repeats, involved in  root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).	myb domain protein 66;(source:Araport11)
AT5G14840.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT5G14760.1	protein_coding	L-aspartate oxidase	At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction  L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2	L-aspartate oxidase;(source:Araport11)
AT5G14850.1	protein_coding	Alg9-like mannosyltransferase family	Encodes a putative mannosyltransferase homolog to human PIG-B and yeast GPI10, both of which are involved in the biosynthesis of glycosylphosphatidylinositol (GPI) anchors.  Disruption of the gene affects COBRA-LIKE10 localization, a GPI-anchored protein (GPI-AP) important for pollen tube growth and guidance.	Alg9-like mannosyltransferase family;(source:Araport11)
AT5G14770.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		PPR repeat protein;(source:Araport11)
AT5G14860.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G14780.1	protein_coding	formate dehydrogenase	Encodes a NAD-dependent formate dehydrogenase.	formate dehydrogenase;(source:Araport11)
AT5G14790.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G14870.1	protein_coding	cyclic nucleotide-gated channel 18	Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth and pollen tube guidance to ovules.  It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery. Also functions as a Ca2+ permeable channel.	cyclic nucleotide-gated channel 18;(source:Araport11)
AT5G14880.1	protein_coding	Potassium transporter family protein		Potassium transporter family protein;(source:Araport11)
AT5G01010.1	protein_coding			retinal-binding protein;(source:Araport11)
AT1G55490.1	protein_coding	chaperonin 60 beta	encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.	chaperonin 60 beta;(source:Araport11)
AT1G55480.1	protein_coding	protein containing PDZ domain, a K-box domain, and a TPR region	Encodes a member of a novel plant protein family containing a PDZ, a K-box, and a TPR motif. mRNA but not protein levels decrease after wounding. ZKT is phosphorylated at Thr and Ser residues after wounding. The mRNA is cell-to-cell mobile.	protein containing PDZ domain, a K-box domain, and a TPR region;(source:Araport11)
AT1G55540.1	protein_coding	Nuclear pore complex protein		Nuclear pore complex protein;(source:Araport11)
AT1G55440.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G55460.1	protein_coding	DNA/RNA-binding protein Kin17, conserved region		DNA/RNA-binding protein Kin17, conserved region;(source:Araport11)
AT1G55430.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G55450.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G55530.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G55410.1	pseudogene			pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G55420.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G55510.1	protein_coding	branched-chain alpha-keto acid decarboxylase E1 beta subunit	branched-chain alpha-keto acid decarboxylase E1 beta	branched-chain alpha-keto acid decarboxylase E1 beta subunit;(source:Araport11)
AT1G55570.1	protein_coding	SKU5  similar 12		SKU5 similar 12;(source:Araport11)
AT1G55560.1	protein_coding	SKU5  similar 14		SKU5 similar 14;(source:Araport11)
AT1G55520.1	protein_coding	TATA binding protein 2	TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.	TATA binding protein 2;(source:Araport11)
AT1G55500.1	protein_coding	evolutionarily conserved C-terminal region 4		evolutionarily conserved C-terminal region 4;(source:Araport11)
AT1G55550.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G72350.1	protein_coding	MADS-box transcription factor family protein		MADS-box transcription factor family protein;(source:Araport11)
AT1G72430.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G72340.1	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein		NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT1G72420.1	protein_coding	NADH:ubiquinone oxidoreductase intermediate-associated protein 30		NADH:ubiquinone oxidoreductase intermediate-associated protein 30;(source:Araport11)
AT1G72460.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G72510.1	protein_coding	Protein of unknown function (DUF1677)		DUF1677 family protein (DUF1677);(source:Araport11)
AT1G72410.1	protein_coding	COP1-interacting protein-related		COP1-interacting protein-like protein;(source:Araport11)
AT1G72450.1	protein_coding	jasmonate-zim-domain protein 6	JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus.  Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.	jasmonate-zim-domain protein 6;(source:Araport11)
AT1G72330.1	protein_coding	alanine aminotransferase 2	Encodes for alanine aminotransferase ALAAT2.	alanine aminotransferase 2;(source:Araport11)
AT1G72440.1	protein_coding	CCAAT-binding factor	Encodes SLOW WALKER2 (SWA2), a NOC1/Mak21 homologue.  Essential for coordinated cell cycle progression during female gametophyte development.	CCAAT-binding factor;(source:Araport11)
AT1G72390.1	protein_coding			nuclear receptor coactivator;(source:Araport11)
AT1G72370.1	protein_coding	40s ribosomal protein SA	acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.	40s ribosomal protein SA;(source:Araport11)
AT1G72500.1	protein_coding			inter alpha-trypsin inhibitor, heavy chain-like protein;(source:Araport11)
AT1G72360.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G72490.1	protein_coding		DRO1 is a member of the IGT gene family and has a unknown function . It is expressed in roots and involved in leaf root architecture, specifically the orientation of lateral root angles. Involved in determining lateral root branch angle.	hypothetical protein;(source:Araport11)
AT1G72480.1	protein_coding	Lung seven transmembrane receptor family protein		Lung seven transmembrane receptor family protein;(source:Araport11)
AT1G72470.1	protein_coding	exocyst subunit exo70 family protein D1	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein D1;(source:Araport11)
AT1G18010.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G18030.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G18040.1	protein_coding	cyclin-dependent kinase D1;3		cyclin-dependent kinase D1;(source:Araport11)
AT1G18250.1	protein_coding	Pathogenesis-related thaumatin superfamily protein	encodes a thaumatin-like protein	Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT1G10550.1	protein_coding	xyloglucan:xyloglucosyl transferase 33	Encodes a membrane-localized protein that is predicted to function during cell wall modification.Overexpression of XTH33 results in abnormal cell morphology. It's expression is under epigenetic control by ATX1.	xyloglucan:xyloglucosyl transferase 33;(source:Araport11)
AT1G10450.1	protein_coding	SIN3-like 6	Encodes SIN3-like 6, a homolog of the transcriptional repressor SIN3 (AT1G24190).	paired amphipathic helix Sin3-like protein;(source:Araport11)
AT1G10560.1	protein_coding	plant U-box 18	Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.	plant U-box 18;(source:Araport11)
AT1G10460.1	protein_coding	germin-like protein 7	germin-like protein (GLP7)	germin-like protein 7;(source:Araport11)
AT1G10570.1	protein_coding	Cysteine proteinases superfamily protein	Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation.	Cysteine proteinases superfamily protein;(source:Araport11)
AT1G10490.1	protein_coding	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)		GNAT acetyltransferase (DUF699);(source:Araport11)
AT1G10470.1	protein_coding	response regulator 4	Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.	response regulator 4;(source:Araport11)
AT1G10580.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G10500.1	protein_coding	chloroplast-localized ISCA-like protein	Involved in chloroplast Fe-S cluster  assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues.	chloroplast-localized ISCA-like protein;(source:Araport11)
AT1G10480.1	protein_coding	zinc finger protein 5	Encodes a zinc finger protein containing only a single zinc finger that acts downstream of ZFP6 in regulating trichome development by integrating GA and cytokinin signaling.	zinc finger protein 5;(source:Araport11)
AT1G10510.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT1G10520.1	protein_coding	DNA polymerase lambda (POLL)	Encodes a homolog of the mammalian DNA polymerase lambda that is involved in the repair of UV-B induced DNA damage.	DNA polymerase lambda (POLL);(source:Araport11)
AT1G10530.1	protein_coding			D-ribose-binding periplasmic protein;(source:Araport11)
AT1G10430.1	protein_coding	protein phosphatase 2A-2	Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4]. It regulates the activation of ADF/cofilin, which, in turn, regulates actin cytoskeleton remodeling and is involved in phot2-mediated chloroplast avoidance movements.	protein phosphatase 2A-2;(source:Araport11)
AT1G10540.1	protein_coding	nucleobase-ascorbate transporter 8		nucleobase-ascorbate transporter 8;(source:Araport11)
AT1G43570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52065.1);(source:TAIR10)
AT1G43590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34838.1);(source:TAIR10)
AT1G43600.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G43560.1	protein_coding	thioredoxin Y2		thioredoxin Y2;(source:Araport11)
AT1G43610.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G43580.1	protein_coding	Sphingomyelin synthetase family protein		Sphingomyelin synthetase family protein;(source:Araport11)
AT1G43620.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a UDP-glucose:sterol-glucosyltransferase.  Mutants produce pale greenish-brown seeds whose dormancy was slightly reduced	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G43630.1	protein_coding	Protein of unknown function (DUF793)		plant/protein (DUF793);(source:Araport11)
AT1G43640.1	protein_coding	tubby like protein 5	Member of TLP family of tubby like proteins that also contain an F-Box.	tubby like protein 5;(source:Araport11)
AT1G43330.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT1G78160.1	protein_coding	pumilio 7	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 7;(source:Araport11)
AT1G78090.1	protein_coding	trehalose-6-phosphate phosphatase	homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases	trehalose-6-phosphate phosphatase;(source:Araport11)
AT1G78170.1	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT1G78180.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G78100.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G78190.1	protein_coding	Trm112p-like protein		Trm112p-like protein;(source:Araport11)
AT1G78110.1	protein_coding			nucleolar GTP-binding protein;(source:Araport11)
AT1G78200.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G78120.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G78210.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G78130.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G78220.1	protein_coding	general regulatory factor 13	14-3-3 protein GF14 pi	general regulatory factor 13;(source:Araport11)
AT1G78140.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G78150.1	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT1G44740.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G44750.1	protein_coding	purine permease 11	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 11;(source:Araport11)
AT1G44830.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a nuclear-localized member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  Overexpression in cultured cells results in an increase in pectin deposition.ERF014 differentially regulates responses to bacterial and fungal  pathogens.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G44760.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT1G44770.1	protein_coding			elongation factor;(source:Araport11)
AT1G44850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36035.1);(source:TAIR10)
AT1G44780.1	protein_coding			translation initiation factor;(source:Araport11)
AT1G44860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1);(source:TAIR10)
AT1G44790.1	protein_coding	ChaC-like family protein		ChaC-like family protein;(source:Araport11)
AT1G44870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42510.1);(source:TAIR10)
AT1G44800.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	Encodes Siliques Are Red 1 (SIAR1). Functions as a bidirectional amino acid transporter that is crucial for the amino acid homeostasis of siliques. Member of nodulin MtN21-like transporter family.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G44840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.2e-64 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G44810.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT1G44880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G10350.1);(source:TAIR10)
AT1G44820.1	protein_coding	Peptidase M20/M25/M40 family protein		Peptidase M20/M25/M40 family protein;(source:Araport11)
AT1G44890.1	protein_coding			inner membrane OXA1-like protein;(source:Araport11)
AT1G12670.1	pseudogene		Encodes a Plant thionin family protein [pseudogene]	pseudogene of thionin-like protein;(source:Araport11)
AT1G12680.1	protein_coding	phosphoenolpyruvate carboxylase-related kinase 2		phosphoenolpyruvate carboxylase-related kinase 2;(source:Araport11)
AT1G12710.1	protein_coding	phloem protein 2-A12	This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.	phloem protein 2-A12;(source:Araport11)
AT1G12620.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G12610.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G12720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.2e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G12630.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G12750.1	protein_coding	RHOMBOID-like protein 6		RHOMBOID-like protein 6;(source:Araport11)
AT1G12640.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein	Encodes a lysophosphatidylcholine acyltransferase (LPCAT). Participates in the Lands cycle in developing seeds.	MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT1G12760.1	protein_coding	Zinc finger, C3HC4 type (RING finger) family protein		Zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT1G12650.1	protein_coding			rRNA biogenesis RRP36-like protein;(source:Araport11)
AT1G12660.1	protein_coding		Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	thionin-like protein;(source:Araport11)
AT1G12730.1	protein_coding	GPI transamidase subunit PIG-U		GPI transamidase subunit PIG-U;(source:Araport11)
AT1G12740.1	protein_coding	cytochrome P450, family 87, subfamily A, polypeptide 2	encodes a protein with cytochrome P450 domain	cytochrome P450, family 87, subfamily A, polypeptide 2;(source:Araport11)
AT1G12700.1	protein_coding	ATP binding;nucleic acid binding;helicases	Encodes RNA PROCESSING FACTOR 1 (RPF1), a pentatricopeptide repeat (PPR) protein of the P-class containing canonical PPR-repeats. RPF1 is required for the 5’-end processing of the nad4 mRNA in mitochondria. Ler and other accessions impaired in processing of the nad4 mRNA 5&#8242;-end, contain a single nucleotide polymorphism (SNP) 807 nucleotides downstream of the predicted translation start codon (G807A). The resulting premature translation termination codon abolishes the function of the RPF1 gene in Ler.	RNA processing FACTOR;(source:Araport11)
AT1G66580.1	protein_coding	senescence associated gene 24		senescence associated gene 24;(source:Araport11)
AT1G66590.1	protein_coding	cytochrome c oxidase 19-1	Mitochondrial copper chaperone which influences copper and iron homeostasis.	cytochrome c oxidase 19-1;(source:Araport11)
AT1G66600.1	protein_coding	ABA overly sensitive mutant 3	A member of WRKY Transcription Factor; Group III. Involved in the regulation of plant responses to ABA and drought stress.	ABA overly sensitive mutant 3;(source:Araport11)
AT1G66610.1	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT1G66620.1	protein_coding	Protein with RING/U-box and TRAF-like domains		Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT1G66630.1	protein_coding	Protein with RING/U-box and TRAF-like domains		Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT1G66640.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT1G09260.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G09280.1	protein_coding			rhodanese-like domain protein;(source:Araport11)
AT1G09250.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G09190.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G09240.1	protein_coding	nicotianamine synthase 3	Encodes a nicotianamine synthase.	nicotianamine synthase 3;(source:Araport11)
AT1G09180.1	protein_coding	secretion-associated RAS super family 1	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	secretion-associated RAS super family 1;(source:Araport11)
AT1G09230.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a U12-type spliceosomal protein that is an indispensible component of the minor spliceosome and plays a crucial role in U12 intron splicing and plant development.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G09170.1	protein_coding	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain		P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT1G09220.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G09210.1	protein_coding	calreticulin 1b	Encodes one of three Arabidopsis calreticulins.Post-transcriptionally regulates together with CRT1 VAMP721/722 levels under ER stress.	calreticulin 1b;(source:Araport11)
AT1G09160.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G09150.1	protein_coding	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein		pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein;(source:Araport11)
AT1G09200.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT1G09140.1	protein_coding	SERINE-ARGININE PROTEIN 30	Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. AT1G09140.1 predominantly accumulates in the cytosol in light grown plants.Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SERINE-ARGININE PROTEIN 30;(source:Araport11)
AT1G09270.1	protein_coding	importin alpha isoform 4	Protein interacts with Agrobacterium proteins VirD2 and VirE2.	importin alpha isoform 4;(source:Araport11)
AT1G32070.1	protein_coding	nuclear shuttle interacting	Encodes a  acetyltransferase (NSI) that is localized in the nucleus and chloroplast. It interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. In the chloroplast NSI functions in the dynamic reorganization  thylakoid membrane complexes.  NSI is highly transcribed in phloem and in xylem parenchyma cells, and in  the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is  turned off as tissues mature.Mutants have reduced melatonin and anthocyanin levels and  do not accumulate the PSI-LHCII state transition complex.	nuclear shuttle interacting;(source:Araport11)
AT1G32060.1	protein_coding	phosphoribulokinase		phosphoribulokinase;(source:Araport11)
AT1G32050.1	protein_coding	SCAMP family protein		SCAMP family protein;(source:Araport11)
AT1G32040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1);(source:TAIR10)
AT1G32030.1	protein_coding	Domain of unknown function (DUF313) 		plant-specific B3-DNA-binding domain protein (DUF313);(source:Araport11)
AT1G32020.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G32000.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G32010.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT1G63880.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans. The mRNA is cell-to-cell mobile.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G63960.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT1G63870.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G63850.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT1G63950.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G63840.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G63940.1	protein_coding	monodehydroascorbate reductase 6		monodehydroascorbate reductase 6;(source:Araport11)
AT1G63830.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT1G63930.1	protein_coding	from the Czech 'roh' meaning 'corner'		from the Czech roh meaning corner;(source:Araport11)
AT1G63820.1	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT1G63810.1	protein_coding			nucleolar protein;(source:Araport11)
AT1G63910.1	protein_coding	myb domain protein 103	member of MYB3R- and R2R3- type MYB- encoding genes	myb domain protein 103;(source:Araport11)
AT1G63900.1	protein_coding	E3 Ubiquitin ligase family protein	Encodes a RING-type ubiquitin E3 ligase of the chloroplast outer membrane that associates with TOC complexes and mediates ubiquitination of TOC components, promoting their degradation.  It not only regulates chloroplast protein import but also targets components of the peroxisome protein import apparatus, PEX13 in particular. Several studies have been done to examine the peroxisomal localization of this protein, with varying interpretations.	E3 Ubiquitin ligase family protein;(source:Araport11)
AT1G60190.1	protein_coding	ARM repeat superfamily protein	Encodes PUB19, a plant U-box armadillo repeat protein. Involved in salt inhibition of germination together with PUB18. The mRNA is cell-to-cell mobile.	ARM repeat superfamily protein;(source:Araport11)
AT1G60200.1	protein_coding	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein	RMB25 is an alternative splicing factor involved in mediation of abiotic stress response and ABA response. Its expression is modulated by a variety of stressors and it in turn appears to affect the ratio of splice variants of stress responsive genes such as HAB1.2/HAB1.1.	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT1G60360.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G60370.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G60380.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein		NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G60390.1	protein_coding	polygalacturonase 1		polygalacturonase 1;(source:Araport11)
AT1G60220.1	protein_coding	UB-like protease 1D	Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sGFP:OTS1 protein accumulates in the nucleus. Double mutant analysis with ULP1C/OTS2 indicates that these genes are involved in salt stress responses and flowering time regulation. Over-expression of 35S:OTS1 increases salt tolerance and reduces the level of SUMO-conjugated proteins. OTS1 transcript levels do not appear to change in response to salt, but, salt stress reduces the level of OTS1 protein in a proteasome-dependent manner.	UB-like protease 1D;(source:Araport11)
AT1G60400.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G60230.1	protein_coding	Radical SAM superfamily protein		Radical SAM superfamily protein;(source:Araport11)
AT1G60410.1	protein_coding	F-box family protein	A paternally expressed imprinted gene.	F-box family protein;(source:Araport11)
AT1G60240.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein		NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G60420.1	protein_coding	DC1 domain-containing protein	Reduce transmission through pollen. The mRNA is cell-to-cell mobile.	DC1 domain-containing protein;(source:Araport11)
AT1G60130.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G60430.1	protein_coding	actin-related protein C3		actin-related protein C3;(source:Araport11)
AT1G60440.1	protein_coding	pantothenate kinase 1	The gene AT1G60440 encodes pantothenate kinase 1. Its molecular function was shown to phosphorylate pantothenate to form 4’-phosphopantothenate.	pantothenate kinase 1;(source:Araport11)
AT1G60250.1	protein_coding	B-box zinc finger family protein		B-box zinc finger family protein;(source:Araport11)
AT1G60260.1	protein_coding	beta glucosidase 5		beta glucosidase 5;(source:Araport11)
AT1G60270.1	protein_coding	beta glucosidase 6		beta glucosidase 6;(source:Araport11)
AT1G60280.1	protein_coding	NAC domain containing protein 23		NAC domain containing protein 23;(source:Araport11)
AT1G60300.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein		NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G60450.1	protein_coding	galactinol synthase 7	Predicted to encode a galactinol synthase.	galactinol synthase 7;(source:Araport11)
AT1G60110.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G60140.1	protein_coding	trehalose phosphate synthase	Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	trehalose phosphate synthase;(source:Araport11)
AT1G60320.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT1G60160.1	protein_coding	Potassium transporter family protein	Member of the KT/KUP/HAK family of proton-coupled potassium transporters which have potential effect on cellular expansion.	Potassium transporter family protein;(source:Araport11)
AT1G60340.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein		NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G60170.1	protein_coding	pre-mRNA processing ribonucleoprotein binding region-containing protein	Encodes a splicing factor PRP31. Involved in transcriptional gene silencing and stress responses.	pre-mRNA processing ribonucleoprotein binding region-containing protein;(source:Araport11)
AT1G60350.1	protein_coding	NAC domain containing protein 24		NAC domain containing protein 24;(source:Araport11)
AT1G60180.1	pseudogene		pseudogene of F-box family protein	pseudogene of RNI-like superfamily protein;(source:Araport11)
AT1G61700.1	protein_coding	RNA polymerases N / 8 kDa subunit	Protein of unknown function that is homologous to the At1g11475 locus that encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V. Homologous to budding yeast RPB10.	RNA polymerases N / 8 kDa subunit;(source:Araport11)
AT1G61770.1	protein_coding	Chaperone DnaJ-domain superfamily protein	J domain protein. The mRNA is cell-to-cell mobile.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G61710.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G61720.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G61780.1	protein_coding	postsynaptic protein-related		postsynaptic protein-like protein;(source:Araport11)
AT1G61790.1	protein_coding	Oligosaccharyltransferase complex/magnesium transporter family protein	Encodes the OST3/6 subunit of the hetero-oligomeric plant oligosaccharyltransferase complex (OST). Also identified by GWAS as having a role in interspecific pollen tube recognition.	Oligosaccharyltransferase complex/magnesium transporter family protein;(source:Araport11)
AT1G61730.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT1G61690.1	protein_coding	phosphoinositide binding		phosphoinositide binding protein;(source:Araport11)
AT1G61670.1	protein_coding	Lung seven transmembrane receptor family protein		Lung seven transmembrane receptor family protein;(source:Araport11)
AT1G61680.1	protein_coding	terpene synthase 14		terpene synthase 14;(source:Araport11)
AT1G61740.1	protein_coding	Sulfite exporter TauE/SafE family protein		Sulfite exporter TauE/SafE family protein;(source:Araport11)
AT1G61750.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT1G61760.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT1G17310.1	protein_coding	MADS-box transcription factor family protein		MADS-box transcription factor family protein;(source:Araport11)
AT1G17300.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G17290.1	protein_coding	alanine aminotransferas	Encodes for alanine aminotransferase (ALAAT1), involved in alanine catabolism during plants recovery from hypoxia The mRNA is cell-to-cell mobile.	alanine aminotransferas;(source:Araport11)
AT1G51940.1	protein_coding	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein	Encodes a LysM-containing receptor-like kinase.  Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant. Based on protein sequence alignment analysis, it has a typical RD signaling domain in its catalytic loop and possesses autophosphorylation activity.It is required for the suppression of defense responses in absence of pathogen infection or upon abscisic acid treatment. Loss-of-function mutants display enhanced resistance to Botrytis cinerea and Pectobacterium carotovorum. Its expression is repressed by pathogen infection and biological elicitors and is induced abscisic acid.Expression is strongly repressed by elicitors and fungal infection, and is induced by the hormone abscisic acid (ABA). Insertional mutants show increased expression of PHYTOALEXIN-DEFICIENT 3 (PAD3), enhanced resistance to Botrytis cinerea and Pectobacterium carotovorum infection and reduced physiological responses to ABA, suggesting that LYK3 is important for the cross-talk between signaling pathways activated by ABA and pathogens (PMID:24639336).	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein;(source:Araport11)
AT1G51950.1	protein_coding	indole-3-acetic acid inducible 18		indole-3-acetic acid inducible 18;(source:Araport11)
AT1G51850.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G51870.1	protein_coding	protein kinase family protein		protein kinase family protein;(source:Araport11)
AT1G51880.1	protein_coding	root hair specific 6		root hair specific 6;(source:Araport11)
AT1G51900.1	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT1G51890.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G51860.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G51910.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G51840.1	protein_coding	protein kinase-related		kinase-like protein;(source:Araport11)
AT1G51920.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G51930.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G77150.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G77250.1	protein_coding	RING/FYVE/PHD-type zinc finger family protein		RING/FYVE/PHD-type zinc finger family protein;(source:Araport11)
AT1G77240.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G77260.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G77270.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G77160.1	protein_coding	Protein of unknown function (DUF506) 		hypothetical protein (DUF506);(source:Araport11)
AT1G77180.1	protein_coding	chromatin protein family	Encodes a putative transcriptional factor.  Shows transcriptional activator activity in yeast.  Involved in response to abscisic acid, salt and osmotic stress. SKIP lengthens period of the circadian clock by impairing the alternative splicing of PRR7 and PRR9. SKIP regulates the splicing of SEF pre-mRNA  and suppresses flowering by activation of FLC.	chromatin protein family;(source:Araport11)
AT1G77280.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT1G77170.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G77200.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G77290.1	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT1G77210.1	protein_coding	sugar transporter 14	AtSTP14 belongs to the family of sugar transport proteins (AtSTPs)in volved in monosaccharide transport. Heterologous expression in yeast revealed that AtSTP14 is the transporter specifc for galactose and does not transport other monosaccharides such as glucose or fructose.	sugar transporter 14;(source:Araport11)
AT1G77300.1	protein_coding	histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific)	Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones.Required for ovule, embryo sac, anther and pollen development.	histone-lysine N-methyltransferase;(source:Araport11)
AT1G77220.1	protein_coding	Protein of unknown function (DUF300)	LAZ1H1 is a DUF300 that is localized to the tonoplast. Along with LAZ1 it appears to play a role in maintaining the structural integrity of vacuoles and regulating BR signaling by modulating downstream subcellular distribution of BAK1.	organic solute transporter ostalpha protein (DUF300);(source:Araport11)
AT1G77310.1	protein_coding			wound-responsive family protein;(source:Araport11)
AT1G77230.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G77130.1	protein_coding	plant glycogenin-like starch initiation protein 2	Encodes a glucuronyltransferase responsible  for the addition of GlcA residues onto xylan and for secondary wall deposition.	plant glycogenin-like starch initiation protein 2;(source:Araport11)
AT1G77140.1	protein_coding	vacuolar protein sorting 45	A peripheral membrane protein that associates with microsomal membranes, likely to function in the transport of proteins to the vacuole. It is a member of Sec1p protein family. It may be involved in the regulation of vesicle fusion reactions through interaction with t-SNAREs at the Golgi trans face.	vacuolar protein sorting 45;(source:Araport11)
AT1G02700.1	protein_coding			GATA transcription factor-like protein;(source:Araport11)
AT1G02680.1	protein_coding	TBP-associated factor 13	Encodes a TBP-Associated Factor (TAF) that functions together with PRC2 in transcriptional regulation during seed development.	TBP-associated factor 13;(source:Araport11)
AT1G02660.1	protein_coding	alpha/beta-Hydrolases superfamily protein	PLIP2  is a glycerolipid A1 lipase with substrate preference for monogalactosyldiacylglycerol. Expression is induced by ABA.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G02650.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G02640.1	protein_coding	beta-xylosidase 2	encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	beta-xylosidase 2;(source:Araport11)
AT1G02630.1	protein_coding	Nucleoside transporter family protein		Nucleoside transporter family protein;(source:Araport11)
AT1G02620.1	protein_coding	Ras-related small GTP-binding family protein		Ras-related small GTP-binding family protein;(source:Araport11)
AT1G02610.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G02710.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT1G02590.1	protein_coding	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein		Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein;(source:Araport11)
AT1G02540.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G02570.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G02580.1	protein_coding	SET domain-containing protein	Encodes the imprinted gene MEA that belongs to Polycomb Repressive Complex 2 (PRC2) and has a SET domain for methyltransferase activity and is involved in the stable transcriptional silencing of target genes.  It negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality.  MEA is imprinted in the endosperm.  The maternal allele is expressed and the paternal allele is silent.  MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is  involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also  dynamically regulated during seed development. In the ovule, the MEA transcripts  are accumulated at their highest level before fertilization  and gradually decrease after fertilization	SET domain-containing protein;(source:Araport11)
AT1G02670.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G02560.1	protein_coding	nuclear encoded CLP protease 5	One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). The mRNA is cell-to-cell mobile.	nuclear encoded CLP protease 5;(source:Araport11)
AT1G02550.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G02530.1	protein_coding	P-glycoprotein 12		P-glycoprotein 12;(source:Araport11)
AT1G02690.1	protein_coding	importin alpha isoform 6	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	importin alpha isoform 6;(source:Araport11)
AT1G02520.1	protein_coding	P-glycoprotein 11	Encodes an ATP-binding cassette (ABC) transporter.  Expressed in the vascular tissue of primary stem. The mRNA is cell-to-cell mobile.	P-glycoprotein 11;(source:Araport11)
AT1G02490.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G02510.1	protein_coding	Outward rectifying potassium channel protein	Encodes AtTPK4, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins.  AtTPK4 is targeted to the plasma membrane.  In contrast other members of the AtTPK proteins are located in tonoplast.  AtTPK4 forms a voltage-independent K+ channel that is blocked by extracellular calcium ions.  May form homomeric ion channels in vivo.	Outward rectifying potassium channel protein;(source:Araport11)
AT1G02500.1	protein_coding	S-adenosylmethionine synthetase 1	encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity.	S-adenosylmethionine synthetase 1;(source:Araport11)
AT1G02470.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G15050.1	protein_coding	indole-3-acetic acid inducible 34	Belongs to auxin inducible gene family.	indole-3-acetic acid inducible 34;(source:Araport11)
AT1G14980.1	protein_coding	chaperonin 10	Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.	chaperonin 10;(source:Araport11)
AT1G14990.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G15000.1	protein_coding	serine carboxypeptidase-like 50		serine carboxypeptidase-like 50;(source:Araport11)
AT1G15010.1	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT1G15020.1	protein_coding	quiescin-sulfhydryl oxidase 1	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.	quiescin-sulfhydryl oxidase 1;(source:Araport11)
AT1G15030.1	protein_coding	Protein of unknown function (DUF789)	Encodes a Cysteine-rich peptide (CRP) family protein	hypothetical protein (DUF789);(source:Araport11)
AT1G58020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.7e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G58050.1	protein_coding	RNA helicase family protein		RNA helicase family protein;(source:Araport11)
AT1G58010.1	pseudogene			pseudogene of R-protein L3 B;(source:Araport11)
AT1G58060.1	protein_coding	RNA helicase family protein		RNA helicase family protein;(source:Araport11)
AT1G58070.1	protein_coding		WALLIN is an actin binding protein involved in  ROP11 mediated xylem pit  patterning.	WEB family protein;(source:Araport11)
AT1G58080.1	protein_coding	ATP phosphoribosyl transferase 1	ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesis	ATP phosphoribosyl transferase 1;(source:Araport11)
AT1G58190.1	protein_coding	receptor like protein 9		receptor like protein 9;(source:Araport11)
AT1G58040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-28 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G36670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37050.1);(source:TAIR10)
AT1G36640.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G36730.1	protein_coding	Translation initiation factor IF2/IF5		Translation initiation factor IF2/IF5;(source:Araport11)
AT1G10810.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G10840.1	protein_coding	translation initiation factor 3 subunit H1	Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).	translation initiation factor 3 subunit H1;(source:Araport11)
AT1G10830.1	protein_coding	15-cis-zeta-carotene isomerase	Encodes a functional 15-cis-zeta-carotene isomerase (Z-ISO).	15-cis-zeta-carotene isomerase;(source:Araport11)
AT1G10820.1	protein_coding	Protein of unknown function (DUF3755)		hypothetical protein (DUF3755);(source:Araport11)
AT1G22370.1	protein_coding	UDP-glucosyl transferase 85A5		UDP-glucosyl transferase 85A5;(source:Araport11)
AT1G22360.1	protein_coding	UDP-glucosyl transferase 85A2		UDP-glucosyl transferase 85A2;(source:Araport11)
AT1G22300.1	protein_coding	general regulatory factor 10	Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1	general regulatory factor 10;(source:Araport11)
AT1G22290.1	protein_coding	14-3-3 family protein		14-3-3 family protein;(source:Araport11)
AT1G22340.1	protein_coding	UDP-glucosyl transferase 85A7		UDP-glucosyl transferase 85A7;(source:Araport11)
AT1G22330.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G22310.1	protein_coding	methyl-CPG-binding domain 8	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain 8;(source:Araport11)
AT1G22280.1	protein_coding	phytochrome-associated protein phosphatase type 2C	Encodes a phytochrome-associated protein, PAPP2C (phytochrome-associated protein phosphatase type 2C).  PAPP2C interacts in the nucleus with phyA (phytochrome A) and phyB.  Functions as a regulator of phytochrome-interacting factor PIF3 by dephosphorylating phytochromes in the nucleus.	phytochrome-associated protein phosphatase type 2C;(source:Araport11)
AT1G22270.1	protein_coding	Trm112p-like protein	Encodes SMO2 (Small Organ 2).  Modulates progression of cell division during organ growth.	Trm112p-like protein;(source:Araport11)
AT1G15630.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G15620.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G15570.1	protein_coding	CYCLIN A2;3	A2-type cyclin. Negatively  regulates endocycles and acts as a key regulator of ploidy levels in  Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues.	CYCLIN A2;(source:Araport11)
AT1G15640.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G15580.1	protein_coding	indole-3-acetic acid inducible 5	auxin induced protein	indole-3-acetic acid inducible 5;(source:Araport11)
AT1G15660.1	protein_coding	centromere protein C	Encodes a homologue of the human centromeric protein C (CENP-C). CENP-C co-localizes with the 180 bp centromeric regions of chromosomes throughout the cell cycle, but does not completely cover the 180 bp regions.	centromere protein C;(source:Araport11)
AT1G15510.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a pentatricopeptide repeat protein required for chloroplast transcript accD RNA editing and early chloroplast biogenesis.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G15500.1	protein_coding	TLC ATP/ADP transporter		TLC ATP/ADP transporter;(source:Araport11)
AT1G15520.1	protein_coding	pleiotropic drug resistance 12	ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots.	pleiotropic drug resistance 12;(source:Araport11)
AT1G15600.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G15530.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT1G15610.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G15540.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate-dependent dioxygenase-like protein;(source:Araport11)
AT1G15550.1	protein_coding	gibberellin 3-oxidase 1	Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809  (&#916;-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback).	gibberellin 3-oxidase 1;(source:Araport11)
AT1G15560.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.8e-130 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G15590.1	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT1G33280.1	protein_coding	NAC domain containing protein 15	NAC domain protein. SMB, BRN1, and BRN2  act to regulate root cap maturation, in a partially redundant fashion.BRN1 and BRN2, control the cell wall maturation processes that are required to detach root cap layers from the root.	NAC domain containing protein 15;(source:Araport11)
AT1G33140.1	protein_coding	Ribosomal protein L6 family	Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and  adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2. The mRNA is cell-to-cell mobile.	Ribosomal protein L6 family;(source:Araport11)
AT1G33250.1	protein_coding	Protein of unknown function (DUF604)		beta-1,3-n-acetylglucosaminyltransferase radical fringe protein, putative (DUF604);(source:Araport11)
AT1G33260.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G33270.1	protein_coding	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein		Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein;(source:Araport11)
AT1G33290.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G69860.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G69850.1	protein_coding	nitrate transporter 1:2	Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots.  It also acts as an ABA importer at the site of ABA biosynthesis and is important for the regulation of stomatal aperture in inflorescence stems.	nitrate transporter 1:2;(source:Araport11)
AT1G69920.1	protein_coding	glutathione S-transferase TAU 12	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 12;(source:Araport11)
AT1G69840.1	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT1G69910.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G69830.1	protein_coding	alpha-amylase-like 3	Encodes a plastid-localized &#945;-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation.  Expression follows circadian rhythms.	alpha-amylase-like 3;(source:Araport11)
AT1G69900.1	protein_coding	Actin cross-linking protein		Actin cross-linking protein;(source:Araport11)
AT1G69820.1	protein_coding	gamma-glutamyl transpeptidase 3	Note that conflicting nomenclature exists in the literature: At1g69820 is named as GGT4 in Plant J. 2007 Mar 49(5):878-88;  and as GGT3 in Plant Physiol. 2007 Aug 144(4):1715-32.	gamma-glutamyl transpeptidase 3;(source:Araport11)
AT1G69890.1	protein_coding	Protein of unknown function (DUF569)		actin cross-linking protein (DUF569);(source:Araport11)
AT1G69810.1	protein_coding	WRKY DNA-binding protein 36	member of WRKY Transcription Factor; Group II-b	WRKY DNA-binding protein 36;(source:Araport11)
AT1G69880.1	protein_coding	thioredoxin H-type 8		thioredoxin H-type 8;(source:Araport11)
AT1G69800.1	protein_coding	Cystathionine beta-synthase (CBS) protein		Cystathionine beta-synthase (CBS) protein;(source:Araport11)
AT1G69950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.0e-71 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT1G69870.1	protein_coding	nitrate transporter 1.7	Encodes a low affinity nitrate transporter NRT1.7.  Expressed in phloem.  Responsible for source-to-sink remobilization of nitrate. The mRNA is cell-to-cell mobile.	nitrate transporter 1.7;(source:Araport11)
AT1G69940.1	protein_coding	Pectin lyase-like superfamily protein	Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers.	Pectin lyase-like superfamily protein;(source:Araport11)
AT1G69930.1	protein_coding	glutathione S-transferase TAU 11	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 11;(source:Araport11)
AT1G27520.1	protein_coding	Glycosyl hydrolase family 47 protein		Glycosyl hydrolase family 47 protein;(source:Araport11)
AT1G27530.1	protein_coding			ubiquitin-fold modifier-conjugating enzyme;(source:Araport11)
AT1G27540.1	protein_coding	Protein of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT1G27550.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G27560.1	pseudogene		pseudogene of F-box family protein-related	pseudogene of F-box protein (DUF295);(source:Araport11)
AT1G27570.1	protein_coding	phosphatidylinositol 3- and 4-kinase family protein		phosphatidylinositol 3- and 4-kinase family protein;(source:Araport11)
AT1G30850.1	protein_coding	root hair specific 4		root hair specific 4;(source:Araport11)
AT1G30780.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G30790.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G30800.1	protein_coding	Fasciclin-like arabinogalactan family protein		Fasciclin-like arabinogalactan family protein;(source:Araport11)
AT1G30810.1	protein_coding	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein	JMJ18 encodes a novel JmjC domain- containing histone H3K4 demethylase.	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11)
AT1G30820.1	protein_coding	CTP synthase family protein	Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT1G30840.1	protein_coding	purine permease 4	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 4;(source:Araport11)
AT1G53920.1	protein_coding	GDSL-motif lipase 5	Contains lipase signature motif and GDSL domain.	GDSL-motif lipase 5;(source:Araport11)
AT1G53790.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G53820.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G53800.1	protein_coding			muscle M-line assembly protein;(source:Araport11)
AT1G53870.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT1G53810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.0e-248 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT1G53880.1	protein_coding	Eukaryotic translation initiation factor 2B (eIF-2B) family protein		translation initiation factor eIF-2B subunit alpha;(source:Araport11)
AT1G53830.1	protein_coding	pectin methylesterase 2	encodes a pectin methylesterase	pectin methylesterase 2;(source:Araport11)
AT1G53840.1	protein_coding	pectin methylesterase 1	encodes a pectin methylesterase	pectin methylesterase 1;(source:Araport11)
AT1G53780.1	protein_coding	peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases		26S proteasome regulatory complex ATPase;(source:Araport11)
AT1G53850.1	protein_coding	20S proteasome alpha subunit E1	Encodes alpha5 subunit of 20s proteosome involved in protein degradation and RNA degradation.	20S proteasome alpha subunit E1;(source:Araport11)
AT1G53910.1	protein_coding	related to AP2 12	Encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. Involved in oxygen sensing. It plays a key role in controlling root bending in response to hypoxia.	related to AP2 12;(source:Araport11)
AT1G53860.1	protein_coding	Remorin family protein	Encodes a protein that is highly methylated in a WT DML background.	Remorin family protein;(source:Araport11)
AT1G49920.1	protein_coding	MuDR family transposase		MuDR family transposase;(source:Araport11)
AT1G55390.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G73230.1	protein_coding	Nascent polypeptide-associated complex NAC		Nascent polypeptide-associated complex NAC;(source:Araport11)
AT1G73220.1	protein_coding	organic cation/carnitine transporter1	Encodes Organic Cation Transporter 1 (OCT1), likely to be involved in polyamine transport.	organic cation/carnitine transporter1;(source:Araport11)
AT1G73260.1	protein_coding	kunitz trypsin inhibitor 1	Encodes a trypsin inhibitor involved in modulating programmed cell death in plant-pathogen interactions.	kunitz trypsin inhibitor 1;(source:Araport11)
AT1G73210.1	protein_coding	Protein of unknown function (DUF789)		hypothetical protein (DUF789);(source:Araport11)
AT1G73310.1	protein_coding	serine carboxypeptidase-like 4		serine carboxypeptidase-like 4;(source:Araport11)
AT1G73200.1	protein_coding	Putative integral membrane protein conserved region (DUF2404)		testis-expressed sequence 2-like protein (DUF2404);(source:Araport11)
AT1G73240.1	protein_coding			nucleoporin protein Ndc1-Nup protein;(source:Araport11)
AT1G73190.1	protein_coding	Aquaporin-like superfamily protein	Moves to the Protein Storage Vacuole in a Golgi independent manner	Aquaporin-like superfamily protein;(source:Araport11)
AT1G73180.1	protein_coding	Eukaryotic translation initiation factor eIF2A family protein		Eukaryotic translation initiation factor eIF2A family protein;(source:Araport11)
AT1G73300.1	protein_coding	serine carboxypeptidase-like 2		serine carboxypeptidase-like 2;(source:Araport11)
AT1G73290.1	protein_coding	serine carboxypeptidase-like 5		serine carboxypeptidase-like 5;(source:Araport11)
AT1G73280.1	protein_coding	serine carboxypeptidase-like 3		serine carboxypeptidase-like 3;(source:Araport11)
AT1G73270.1	protein_coding	serine carboxypeptidase-like 6		serine carboxypeptidase-like 6;(source:Araport11)
AT1G10990.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G11100.1	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related		SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT1G10960.1	protein_coding	ferredoxin 1		ferredoxin 1;(source:Araport11)
AT1G10880.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	Putative role in response to salt stress.  Mutants grow larger than the wild type under salt stress condition (Ann Stapleton and Ashley Green, 2009, personal communication).	core-2/I-branching beta-1,6-n-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G10870.1	protein_coding	ARF-GAP domain 4	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3.	ARF-GAP domain 4;(source:Araport11)
AT1G10950.1	protein_coding	transmembrane nine 1	Encodes an Arabidopsis Transmembrane nine (TMN) protein.  Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.	transmembrane nine 1;(source:Araport11)
AT1G11090.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G10940.1	protein_coding	Protein kinase superfamily protein	Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute.	Protein kinase superfamily protein;(source:Araport11)
AT1G11080.1	protein_coding	serine carboxypeptidase-like 31		serine carboxypeptidase-like 31;(source:Araport11)
AT1G11120.1	protein_coding			CTTNBP 2 amino-terminal-like protein;(source:Araport11)
AT1G10930.1	protein_coding	DNA helicase (RECQl4A)	DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.	DNA helicase (RECQl4A);(source:Araport11)
AT1G11060.1	protein_coding	WAPL (Wings apart-like protein regulation of heterochromatin) protein	Encodes one of two redundant proteins (the other is WAPL2) that are involved in prophase removal of cohesion during meiosis. Double mutants with wapl2 exhibit reduced fertility due to defects in meiosis and also some abnormal embryo development in rare cases where embryos are formed.	WAPL (Wings apart-like protein regulation of heterochromatin) protein;(source:Araport11)
AT1G11110.1	protein_coding	LisH and RanBPM domains containing protein		LisH and RanBPM domains containing protein;(source:Araport11)
AT1G10920.1	protein_coding	NB-ARC domain-containing disease resistance protein	Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family.  Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.	NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT1G11050.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G11070.1	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G10910.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Member of the P subfamily of PRR proteins. Loss of function results in defects in abnormal plastid RNA edit and chloroplast biogenesis	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G11040.1	protein_coding	HSP40/DnaJ peptide-binding protein		HSP40/DnaJ peptide-binding protein;(source:Araport11)
AT1G11020.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G11000.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT1G10980.1	protein_coding	Lung seven transmembrane receptor family protein		Lung seven transmembrane receptor family protein;(source:Araport11)
AT1G10900.1	protein_coding	Phosphatidylinositol-4-phosphate 5-kinase family protein		Phosphatidylinositol-4-phosphate 5-kinase family protein;(source:Araport11)
AT1G10970.1	protein_coding	zinc transporter 4 precursor	A member of Zrt- and Irt-related protein (ZIP) family.  transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.	zinc transporter;(source:Araport11)
AT1G10890.1	protein_coding			arginine/glutamate-rich 1 protein;(source:Araport11)
AT1G31300.1	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G31310.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G31320.1	protein_coding	LOB domain-containing protein 4		LOB domain-containing protein 4;(source:Araport11)
AT1G31250.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT1G31330.1	protein_coding	photosystem I subunit F	Encodes subunit F of photosystem I.	photosystem I subunit F;(source:Araport11)
AT1G31260.1	protein_coding	zinc transporter 10 precursor	member of Fe(II) transporter isolog family	zinc transporter 10 precursor;(source:Araport11)
AT1G31340.1	protein_coding	related to ubiquitin 1	Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation.  It has been shown to be conjugated to the cullin AtCUL1.  The RUB-conjugation pathway has been implicated in in auxin response.	related to ubiquitin 1;(source:Araport11)
AT1G31270.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G31350.1	protein_coding	KAR-UP F-box 1		KAR-UP F-box 1;(source:Araport11)
AT1G31280.1	protein_coding	Argonaute family protein	Encodes Argonaute gene that binds viral siRNAs and is involved in antiviral defense response. Regulates innate immunity.Mutants have increased susceptibility to Potato virus X and tobacco rattle virus.	Argonaute family protein;(source:Araport11)
AT1G31290.1	protein_coding	ARGONAUTE 3		ARGONAUTE 3;(source:Araport11)
AT1G31360.1	protein_coding	RECQ helicase L2	Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.	RECQ helicase L2;(source:Araport11)
AT1G33590.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G33580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 5.5e-96 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT1G33610.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G33600.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G67440.1	protein_coding	Minichromosome maintenance (MCM2/3/5) family protein	Homolog of bacterial rsgA, functions in chloroplast ribosome biogenesis.	Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT1G67430.1	protein_coding	Ribosomal protein L22p/L17e family protein		Ribosomal protein L22p/L17e family protein;(source:Araport11)
AT1G67420.1	protein_coding	Zn-dependent exopeptidases superfamily protein		Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT1G67450.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G61360.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61350.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G61340.1	protein_coding	F-box family protein	Encodes a F-box protein induced by various biotic or abiotic stress.	F-box family protein;(source:Araport11)
AT1G61490.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61470.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Deadenylase.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G61330.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G61410.1	protein_coding	DNA double-strand break repair and VJ recombination XRCC4		DNA double-strand break repair and VJ recombination XRCC4;(source:Araport11)
AT1G61460.1	protein_coding	S-locus protein kinase, putative		G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT1G61320.1	protein_coding	FBD / Leucine Rich Repeat domains containing protein		FBD / Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G61400.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61450.1	protein_coding			CAP-gly domain linker;(source:Araport11)
AT1G61390.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61480.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61440.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61310.1	protein_coding	LRR and NB-ARC domains-containing disease resistance protein		LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT1G61430.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61380.1	protein_coding	S-domain-1 29	Encodes a membrane localized S-domain receptor kinase that is involved in lipopolysaccharide (LPS) sensing. SD1-29 detected LPS of Pseudomonas and Xanthomonas species for which it serves as a microbe associated molecular pattern triggering innate immunity. Loses of function mutants are hyper susceptible to P.syringae.	S-domain-1 29;(source:Araport11)
AT1G61370.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61300.1	protein_coding	LRR and NB-ARC domains-containing disease resistance protein		LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT1G61420.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61290.1	protein_coding	syntaxin of plants 124	member of SYP12 Gene Family	syntaxin of plants 124;(source:Araport11)
AT1G61280.1	protein_coding	Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit		Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit;(source:Araport11)
AT1G04530.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G04600.1	protein_coding	myosin XI A	member of Myosin-like proteins	myosin XI A;(source:Araport11)
AT1G04710.1	protein_coding	peroxisomal 3-ketoacyl-CoA thiolase  4	EC2.3.1.16 thiolase. Its transcript levels change after inducing MUTE expression in a mute background.	peroxisomal 3-ketoacyl-CoA thiolase 4;(source:Araport11)
AT1G04590.1	protein_coding			PPR containing-like protein;(source:Araport11)
AT1G04700.1	protein_coding	PB1 domain-containing protein tyrosine kinase		PB1 domain-containing protein tyrosine kinase;(source:Araport11)
AT1G04690.1	protein_coding	potassium channel beta subunit 1		potassium channel beta subunit 1;(source:Araport11)
AT1G04580.1	protein_coding	aldehyde oxidase 4	Encodes aldehyde oxidase AAO4 preferentially expressed in developing seeds.	aldehyde oxidase 4;(source:Araport11)
AT1G04570.1	protein_coding	Major facilitator superfamily protein	Similar to plastid solute transporters.	Major facilitator superfamily protein;(source:Araport11)
AT1G04680.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G04640.1	protein_coding	lipoyltransferase 2	Lipoyltransferase, located in mitochondria but not found in chloroplasts	lipoyltransferase 2;(source:Araport11)
AT1G04560.1	protein_coding	AWPM-19-like family protein		AWPM-19-like family protein;(source:Araport11)
AT1G04670.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G04630.1	protein_coding	GRIM-19 protein		GRIM-19 protein;(source:Araport11)
AT1G04550.1	protein_coding	AUX/IAA transcriptional regulator family protein	IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem	AUX/IAA transcriptional regulator family protein;(source:Araport11)
AT1G04660.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT1G04620.1	protein_coding	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family	Encodes a 7-hydroxymethyl chlorophyll a reductase, an enzyme of the chlorophyll cycle that converts 7-hydroxymethyl chlorophyll a to chlorophyll a.	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family;(source:Araport11)
AT1G04730.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Necessary for sister chromatid cohesion. Acts in synergy with ETG1.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G04650.1	protein_coding		FLIP is a member of a conserved gene family with wide distribution across taxa. In Arabidopsis, it forms a complex with FIGL1 regulates meiotic crossover formation via RAD51 and DMC1.	holliday junction resolvase;(source:Araport11)
AT1G04610.1	protein_coding	YUCCA 3		YUCCA 3;(source:Araport11)
AT1G04540.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G26620.1	protein_coding	Plant protein of unknown function (DUF863)		T-box transcription factor, putative (DUF863);(source:Araport11)
AT1G26530.1	protein_coding	PIN domain-like family protein		PIN domain-like family protein;(source:Araport11)
AT1G26610.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT1G26520.1	protein_coding	Cobalamin biosynthesis CobW-like protein		Cobalamin biosynthesis CobW-like protein;(source:Araport11)
AT1G26410.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT1G26600.1	protein_coding	CLAVATA3/ESR-RELATED 9	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. Can partially replace CLV3 function in vivo.	CLAVATA3/ESR-RELATED 9;(source:Araport11)
AT1G26510.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G26590.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT1G26400.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT1G26500.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G26580.1	protein_coding			ELM2 domain protein;(source:Araport11)
AT1G26390.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT1G26480.1	protein_coding	general regulatory factor 12	14-3-3 protein GF14iota (grf12)	general regulatory factor 12;(source:Araport11)
AT1G26570.1	protein_coding	UDP-glucose dehydrogenase 1		UDP-glucose dehydrogenase 1;(source:Araport11)
AT1G26380.1	protein_coding	FAD-binding Berberine family protein	Functions in the biosynthesis of 4-hydroxy indole-3-carbonyl nitrile (4-OH-ICN), a cyanogenic phytoalexin in Arabidopsis. FOX1 acts as a dehydrogenase on indole cyanohydrin to form indole carbonyl nitrile.	FAD-binding Berberine family protein;(source:Araport11)
AT1G26470.1	protein_coding			chromatin modification-like protein;(source:Araport11)
AT1G26560.1	protein_coding	beta glucosidase 40		beta glucosidase 40;(source:Araport11)
AT1G26370.1	protein_coding	RNA helicase family protein		RNA helicase family protein;(source:Araport11)
AT1G26550.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein		FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT1G26360.1	protein_coding	methyl esterase 13	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.	methyl esterase 13;(source:Araport11)
AT1G26450.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G26540.1	protein_coding	Agenet domain-containing protein		Agenet domain-containing protein;(source:Araport11)
AT1G26440.1	protein_coding	ureide permease 5	uptake assays in a yeast mutant indicated this splice variant is not a cellular importer for allantoin, uracil or xanthine	ureide permease 5;(source:Araport11)
AT1G26420.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT1G26460.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G48490.1	protein_coding	Protein kinase superfamily protein	Protein kinase which together with IREH1 plays an important role in controlling root skewing and maintaining the microtubule network.	Protein kinase superfamily protein;(source:Araport11)
AT1G48500.1	protein_coding	jasmonate-zim-domain protein 4		jasmonate-zim-domain protein 4;(source:Araport11)
AT1G48590.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G48510.1	protein_coding	Surfeit locus 1 cytochrome c oxidase biogenesis protein		Surfeit locus 1 cytochrome c oxidase biogenesis protein;(source:Araport11)
AT1G48600.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a phosphoethanolamine N-methyltransferase that catalyses the last two methylation steps of the three sequential methylations of phosphoethanolamine (PEA) that are required for the synthesis of phosphocholine (PCho) in plants.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G48440.1	protein_coding	B-cell receptor-associated 31-like		B-cell receptor-associated 31-like protein;(source:Araport11)
AT1G48520.1	protein_coding	GLU-ADT subunit B	Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).	GLU-ADT subunit B;(source:Araport11)
AT1G48610.1	protein_coding	AT hook motif-containing protein		AT hook motif-containing protein;(source:Araport11)
AT1G48450.1	protein_coding	Protein of unknown function (DUF760)		alanine-tRNA ligase, putative (DUF760);(source:Araport11)
AT1G48530.1	protein_coding			proteasome inhibitor-like protein;(source:Araport11)
AT1G48540.1	protein_coding	Outer arm dynein light chain 1 protein		Outer arm dynein light chain 1 protein;(source:Araport11)
AT1G48460.1	protein_coding			tRNA-processing ribonuclease BN;(source:Araport11)
AT1G48550.1	protein_coding	Vacuolar protein sorting-associated protein 26	VPS26C is a component of a retromer complex, it is involved in endosome to lysosome protein transport and root hair growth.	Vacuolar protein sorting-associated protein 26;(source:Araport11)
AT1G48470.1	protein_coding	glutamine synthetase 1;5	Encodes cytosolic glutamine synthase isozyme.  Expression of mRNA is not detectable in roots.	glutamine synthetase 1;(source:Araport11)
AT1G48560.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G48480.1	protein_coding	receptor-like kinase 1	Arabidopsis thaliana receptor-like protein kinase (RKL1) gene	receptor-like kinase 1;(source:Araport11)
AT1G48570.1	protein_coding	zinc finger (Ran-binding) family protein		zinc finger (Ran-binding) family protein;(source:Araport11)
AT1G48580.1	protein_coding			nuclear localized protein;(source:Araport11)
AT1G01630.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G01640.1	protein_coding	BTB/POZ domain-containing protein	Putative role in flower development.  Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P=0.1) (Stapleton and Woodruff 2009, personal communication).	BTB/POZ domain-containing protein;(source:Araport11)
AT1G01730.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G01820.1	protein_coding	peroxin 11c	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.	peroxin 11c;(source:Araport11)
AT1G01650.1	protein_coding	SIGNAL PEPTIDE PEPTIDASE-LIKE 4		SIGNAL PEPTIDE PEPTIDASE-LIKE 4;(source:Araport11)
AT1G01740.1	protein_coding	Protein kinase protein with tetratricopeptide repeat domain		kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT1G01660.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G01840.1	protein_coding			AP2-like ethylene-responsive transcription factor SNZ;(source:Araport11)
AT1G01750.1	protein_coding	actin depolymerizing factor 11		actin depolymerizing factor 11;(source:Araport11)
AT1G01670.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G01760.1	protein_coding	adenosine deaminases;RNA binding;RNA binding;adenosine deaminases		denosine deaminases acting on tRNA;(source:Araport11)
AT1G01680.1	protein_coding	plant U-box 54		plant U-box 54;(source:Araport11)
AT1G01770.1	protein_coding			propionyl-CoA carboxylase;(source:Araport11)
AT1G01690.1	protein_coding	putative recombination initiation defects 3	Encodes a novel plant-specific protein that is involved in meiotic double strand break formation.	putative recombination initiation defects 3;(source:Araport11)
AT1G01710.1	protein_coding	Acyl-CoA thioesterase family protein		acyl-CoA thioesterase II;(source:Araport11)
AT1G01780.1	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization. The mRNA is cell-to-cell mobile.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT1G01790.1	protein_coding	K+ efflux antiporter 1	Encodes a member of the cation/proton antiporters-2 antiporter superfamily, the K efflux antiporter KEA1 that is localized to the chloroplast envelope.	K+ efflux antiporter 1;(source:Araport11)
AT1G01700.1	protein_coding	RHO guanyl-nucleotide exchange factor 2	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 2;(source:Araport11)
AT1G01720.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA. The mRNA is cell-to-cell mobile.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G01800.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G01830.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G01810.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G30020.1	protein_coding	Protein of unknown function, DUF538		hypothetical protein (Protein of unknown function, DUF538);(source:Araport11)
AT1G30040.1	protein_coding	gibberellin 2-oxidase	Encodes a gibberellin 2-oxidase that acts on C-19 gibberellins. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.	gibberellin 2-oxidase;(source:Araport11)
AT1G30050.1	protein_coding			tropomyosin;(source:Araport11)
AT1G29970.1	protein_coding	60S ribosomal protein L18A-1		60S ribosomal protein L18A-1;(source:Araport11)
AT1G30060.1	protein_coding	COP1-interacting protein-related		COP1-interacting protein-like protein;(source:Araport11)
AT1G29980.1	protein_coding	Protein of unknown function, DUF642		choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT1G30070.1	protein_coding	SGS domain-containing protein		SGS domain-containing protein;(source:Araport11)
AT1G29990.1	protein_coding	prefoldin 6	Encodes a cytoplastic protein with similarity to yeast prefoldin6, a subunit of the prefoldin complex. The PFD complex is thought to function along with the TCP ring complex to properly fold microtubule proteins.	prefoldin 6;(source:Araport11)
AT1G30080.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G30000.1	protein_coding	alpha-mannosidase 3		alpha-mannosidase 3;(source:Araport11)
AT1G30090.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G30010.1	protein_coding	Intron maturase, type II family protein	Analysis of the RNA profiles of wild-type and mutant plants establishes a role for nMAT1 in the trans-splicing of nad1 intron 1 and in the cis-splicing of nad2 intron 1 and nad4 intron 2.	Intron maturase, type II family protein;(source:Araport11)
AT1G20230.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G20220.1	protein_coding	Alba DNA/RNA-binding protein		Alba DNA/RNA-binding protein;(source:Araport11)
AT1G20100.1	protein_coding			DNA ligase-like protein;(source:Araport11)
AT1G20200.1	protein_coding	PAM domain (PCI/PINT associated module) protein		PAM domain (PCI/PINT associated module) protein;(source:Araport11)
AT1G20090.1	protein_coding	RHO-related protein from plants 2	Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment.  Inhibit light-induced stomatal opening. The mRNA is cell-to-cell mobile.	RHO-related protein from plants 2;(source:Araport11)
AT1G19990.1	protein_coding			nucleolin;(source:Araport11)
AT1G20190.1	protein_coding	expansin 11	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin 11;(source:Araport11)
AT1G20080.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	Encodes a synaptotagmin localized on the Golgi apparatus and that regulates   protein secretion via the unconventional protein transport from the cytosol to the extracellular matrix in plant cells.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G19980.1	protein_coding	cytomatrix protein-related		cytomatrix protein-like protein;(source:Araport11)
AT1G20180.1	protein_coding	Protein of unknown function (DUF677)		transmembrane protein (DUF677);(source:Araport11)
AT1G20070.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G19970.1	protein_coding	ER lumen protein retaining receptor family protein		ER lumen protein retaining receptor family protein;(source:Araport11)
AT1G20150.1	protein_coding	Subtilisin-like serine endopeptidase family protein		Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT1G20060.1	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT1G19960.1	protein_coding		Unknown gene, expression decreased in response to Mn and increased by cytokinin.	transcription factor;(source:Araport11)
AT1G20140.1	protein_coding	SKP1-like 4		SKP1-like 4;(source:Araport11)
AT1G20050.1	protein_coding	C-8,7 sterol isomerase	C-8 sterol isomerase that also plays a role in miRNA function.	C-8,7 sterol isomerase;(source:Araport11)
AT1G19950.1	protein_coding	HVA22-like protein H (ATHVA22H)		HVA22-like protein H (ATHVA22H);(source:Araport11)
AT1G20130.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G20030.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT1G20110.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein	Encodes a protein that is localized to the peripheral membrane of late endosomal compartments. Involved in the regulation of mulitivesicular/prevacuolar compartment protein sorting. Loss of function mutations are embryo lethal. Regulates IRT1-dependent metal transport and metal homeostasis. The mRNA is cell-to-cell mobile.	RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G20020.1	protein_coding	ferredoxin-NADP(+)-oxidoreductase 2	Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase.  It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma The mRNA is cell-to-cell mobile.	ferredoxin-NADP[+]-oxidoreductase 2;(source:Araport11)
AT1G20160.1	protein_coding	Subtilisin-like serine endopeptidase family protein	Encodes two isoforms. One (SBT5.2(a) ) is a secreted, cell wall localized subtilisin-like serine protease that is involved in regulation of stomatal development. The second isoform (SBT5.2(b) is localized to endosomes.	Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT1G20010.1	protein_coding	tubulin beta-5 chain	beta tubulin	tubulin beta-5 chain;(source:Araport11)
AT1G20120.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G20000.1	protein_coding	TBP-associated factor 11B	Encodes TAF11b, a putative TBP-associated factor (TBP: TATA binding protein).	TBP-associated factor 11B;(source:Araport11)
AT1G05750.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G05760.1	protein_coding	Mannose-binding lectin superfamily protein	Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance	Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G05850.1	protein_coding	Chitinase family protein	Encodes an endo chitinase-like protein AtCTL1.  Essential for tolerance to heat, salt and drought stresses.  Also involved in root hair development, cell expansion and response to cytokinin.  Allelic  to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.	Chitinase family protein;(source:Araport11)
AT1G05770.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G05860.1	protein_coding			INO80 complex subunit D-like protein;(source:Araport11)
AT1G05780.1	protein_coding	Vacuolar ATPase assembly integral membrane protein VMA21-like domain		Vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein;(source:Araport11)
AT1G05870.1	protein_coding	Protein of unknown function (DUF1685)		hypothetical protein (DUF1685);(source:Araport11)
AT1G05790.1	protein_coding	lipase class 3 family protein		lipase class 3 family protein;(source:Araport11)
AT1G05880.1	protein_coding	RING/U-box superfamily protein	Encodes ARI12 (ARIADNE 12). ARI12 belongs to a family of ‘RING between RING fingers' (RBR) domain proteins with E3 ligase activity. Expression of ARI12 is induced by UV-B exposure.	RING/U-box superfamily protein;(source:Araport11)
AT1G05890.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G05800.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a galactolipase. Located in the chloroplast. Involved in the initial step of jasmonic acid biosynthesis. Expressed in vegetative tissues and is necessary for the biosynthesis of basal-level JAs in vegetative tissues.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G05820.1	protein_coding	SIGNAL PEPTIDE PEPTIDASE-LIKE 5		SIGNAL PEPTIDE PEPTIDASE-LIKE 5;(source:Araport11)
AT1G05900.1	protein_coding	endonuclease III 2		endonuclease III 2;(source:Araport11)
AT1G05830.1	protein_coding	trithorax-like protein 2	Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.	trithorax-like protein 2;(source:Araport11)
AT1G05910.1	protein_coding	cell division cycle protein 48-related / CDC48-related	Encodes an acetylated histone-binding protein BRAT1. BRAT1 forms a complex with BRP1 to prevent transcriptional silencing.	cell division cycle protein 48-related / CDC48-like protein;(source:Araport11)
AT1G05840.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G05920.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein (DUF313);(source:Araport11)
AT1G05810.1	protein_coding	RAB GTPase homolog A5E		Rab GTPase-like A5A protein;(source:Araport11)
AT1G06150.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a LHW-like protein with 79% amino acid identity to LHW.	basic helix loop helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G05990.1	protein_coding	EF hand calcium-binding protein family		EF hand calcium-binding protein family;(source:Araport11)
AT1G06080.1	protein_coding	delta 9 desaturase 1	Encodes a protein homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature.  It is involved in the desaturation of VLCFAs to make monounsaturated VLCFAs.	delta 9 desaturase 1;(source:Araport11)
AT1G06000.1	protein_coding	UDP-Glycosyltransferase superfamily protein	encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G06060.1	protein_coding	LisH and RanBPM domains containing protein		LisH and RanBPM domains containing protein;(source:Araport11)
AT1G06090.1	protein_coding	Fatty acid desaturase family protein		Fatty acid desaturase family protein;(source:Araport11)
AT1G06010.1	protein_coding			basic leucine zipper/W2 domain protein;(source:Araport11)
AT1G06140.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes MEF3 (mitochondrial editing factor 3), a PPR (pentatricopeptide repeat) protein of the E domain subclass. Functions in mitochondrial RNA editing.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G06100.1	protein_coding	Fatty acid desaturase family protein		Fatty acid desaturase family protein;(source:Araport11)
AT1G06020.1	protein_coding	pfkB-like carbohydrate kinase family protein	Encodes a member of the fructokinase gene family.  Nomenclature according to Riggs 2017 has been adopted for the family by the community (personal communication, Boernke, Callis, Granot, Boernke, and Smeekens).	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT1G06110.1	protein_coding	SKP1/ASK-interacting protein 16		SKP1/ASK-interacting protein 16;(source:Araport11)
AT1G06030.1	protein_coding	pfkB-like carbohydrate kinase family protein	Encodes a member of the fructokinase gene family.  Nomenclature according to Riggs 2017 has been adopted for the family by the community (personal communication, Boernke, Callis, Granot, Boernke, and Smeekens).	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT1G06120.1	protein_coding	Fatty acid desaturase family protein		Fatty acid desaturase family protein;(source:Araport11)
AT1G06040.1	protein_coding	B-box zinc finger family protein	Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.STO transcript levels are regulated by photoperiod and phtyohormones. STO competes with FLC in the regulation of floral transition genes SOC1 and FT.	B-box zinc finger family protein;(source:Araport11)
AT1G05960.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G06130.1	protein_coding	glyoxalase 2-4		glyoxalase 2-4;(source:Araport11)
AT1G06070.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT1G05940.1	protein_coding	cationic amino acid transporter 9	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.	cationic amino acid transporter 9;(source:Araport11)
AT1G06050.1	protein_coding	Protein of unknown function (DUF1336)		ENHANCED DISEASE RESISTANCE-like protein (DUF1336);(source:Araport11)
AT1G05950.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G05970.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Anti-silencing factor. Forms a complex with ASI1-EDM2 that is required for expression of some  nonintronic HC-TRE genes	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G80650.1	protein_coding	RNAse THREE-like protein 1		RNAse THREE-like protein 1;(source:Araport11)
AT1G80630.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT1G80640.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G36030.1	protein_coding	F-box family protein	Encodes a member of the F-box family, whose members involved in  regulating diverse cellular processes including cell cycle transition,  transcriptional regulation and signal transduction.	F-box family protein;(source:Araport11)
AT1G36020.1	protein_coding			DEAD/DEAH-box RNA helicase family protein;(source:Araport11)
AT1G35970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.8e-37 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G36000.1	protein_coding	LOB domain-containing protein 5		LOB domain-containing protein 5;(source:Araport11)
AT1G27690.1	protein_coding	Protein of unknown function (DUF620)		lipase, putative (DUF620);(source:Araport11)
AT1G27700.1	protein_coding	Syntaxin/t-SNARE family protein		Syntaxin/t-SNARE family protein;(source:Araport11)
AT1G27710.1	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT1G27720.1	protein_coding	TBP-associated factor 4B		TBP-associated factor 4B;(source:Araport11)
AT1G27660.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G27740.1	protein_coding	root hair defective 6-like 4	Basic helix-loop-helix (bHLH) transcription factor  that is sufficient to promote postmitotic cell growth in root-hair cells. RSL4 is a direct transcriptional target of RHD6	root hair defective 6-like 4;(source:Araport11)
AT1G27670.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G27760.1	protein_coding	interferon-related developmental regulator family protein / IFRD protein family	Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.	interferon-related developmental regulator family protein / IFRD protein family;(source:Araport11)
AT1G27750.1	protein_coding	nucleic acid binding		nucleic acid binding protein;(source:Araport11)
AT1G27680.1	protein_coding	ADPGLC-PPase large subunit	ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions. The mRNA is cell-to-cell mobile.	ADPGLC-PPase large subunit;(source:Araport11)
AT1G27730.1	protein_coding	salt tolerance zinc finger	Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. Also involved in response to photooxidative stress.	salt tolerance zinc finger;(source:Araport11)
AT1G68190.1	protein_coding	B-box zinc finger family protein		B-box zinc finger family protein;(source:Araport11)
AT1G68270.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G68180.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G68260.1	protein_coding	Thioesterase superfamily protein		Thioesterase superfamily protein;(source:Araport11)
AT1G68300.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT1G68350.1	protein_coding			cotton fiber protein;(source:Araport11)
AT1G68250.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G68290.1	protein_coding	endonuclease 2	Encodes an endonuclease ENDO2. ENDO2 purified from transgenic Arabidopsis digests RNA, ssDNA, and dsDNA, with a substrate preference for ssDNA and RNA. ENDO2 produced and purified from Nicotiana benthamiana expression showed no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, in vitro.	endonuclease 2;(source:Araport11)
AT1G68160.1	protein_coding	Protein of unknown function (DUF3755)		ZZ-type zinc finger protein, putative (DUF3755);(source:Araport11)
AT1G68240.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G68280.1	protein_coding	Thioesterase superfamily protein		Thioesterase superfamily protein;(source:Araport11)
AT1G68150.1	protein_coding	WRKY DNA-binding protein 9	member of WRKY Transcription Factor; Group II-b The mRNA is cell-to-cell mobile.	WRKY DNA-binding protein 9;(source:Araport11)
AT1G68230.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT1G68170.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G68220.1	protein_coding	Protein of unknown function (DUF1218)		aerobic coproporphyrinogen-III oxidase (DUF1218);(source:Araport11)
AT1G68340.1	protein_coding	Protein of unknown function (DUF1639)		hypothetical protein (DUF1639);(source:Araport11)
AT1G68210.1	protein_coding	pseudo-response regulator 6	Similar to ARR response regulator proteins that function in two-component signal transduction  but lacking a conserved D-D-K motif in the receiver domain	pseudo-response regulator 6;(source:Araport11)
AT1G68330.1	protein_coding			membrane-associated kinase regulator;(source:Araport11)
AT1G68200.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G68320.1	protein_coding	myb domain protein 62	putative transcription factor: R2R3-MYB transcription  family. Involved in regulation of phosphate starvation responses and gibberellic acid biosynthesis.	myb domain protein 62;(source:Araport11)
AT1G68310.1	protein_coding	Protein of unknown function (DUF59)	Encodes a protein that has been shown to specifically interact with a sequence motif, PIEPPPHH, in the cytoplasmic tail of a membrane protein that directs the protein from the ER to vacuoles where it is internalized.  Required for both leaf adaxial–abaxial polarity formation  and normal cell proliferation. It is part of a protein complex with CIA1, NAR1, and MET18, which are highly conserved in eukaryotes and are involved in the biogenesis of cytosolic and nuclear Fe-S proteins.	MIP18 family protein (DUF59);(source:Araport11)
AT1G68360.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Encodes a nuclear localized member of the C2H2 family of TFIIIA transcription factors.GIS3 is involved in trichome initiation and development downstream of GA and cytokinin signaling. GIS regulates the expression  GIS and GIS2.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G54760.1	protein_coding	AGAMOUS-like 85		AGAMOUS-like 85;(source:Araport11)
AT1G54560.1	protein_coding	Myosin family protein with Dil domain	Encodes a class XI myosin that is involved in organelle motility, actin organization, and optimal growth of pollen tubes.	Myosin family protein with Dil domain-containing protein;(source:Araport11)
AT1G54770.1	protein_coding	Fcf2 pre-rRNA processing protein		Fcf2 pre-rRNA processing protein;(source:Araport11)
AT1G54580.1	protein_coding	acyl carrier protein 2	encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Gene expression is not regulated by light but downregulated by starvation and upregulated by increased level of exogenous sucrose. The mRNA is cell-to-cell mobile.	acyl carrier protein 2;(source:Araport11)
AT1G54780.1	protein_coding	thylakoid lumen 18.3 kDa protein	Encodes a thylakoid lumen protein regulating photosystem II repair cycle. Has acid phosphatase activity. The mRNA is cell-to-cell mobile.	thylakoid lumen 18.3 kDa protein;(source:Araport11)
AT1G54680.1	protein_coding			translation initiation factor 3 subunit I;(source:Araport11)
AT1G54590.1	protein_coding			pre-mRNA-splicing factor-like protein;(source:Araport11)
AT1G54570.1	protein_coding	Esterase/lipase/thioesterase family protein	Encodes a protein with phytyl ester synthesis and diacylglycerol acyltransferase activities that is involved in the deposition of free phytol and free fatty acids in the form of phytyl esters in chloroplasts, a process involved in maintaining the integrity of the photosynthetic membrane during abiotic stress and senescence.	Esterase/lipase/thioesterase family protein;(source:Araport11)
AT1G54690.1	protein_coding	gamma histone variant H2AX	Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A.  Upon DSB formation, rapid accumulation of phosphorylated  H2AX (&#947;-H2AX) occurs around the break site. H2AX foci accumulate in early G2.  Immunolocalization studies in spread preparations of  wild-type meiocytes at G2/early leptotene revealed  the accumulation of numerous rather diffuse &#947;-H2AX  foci throughout the chromatin. However,  their accumulation is not contemporaneous with  that of AtSPO11-1. At 3 h post-S, no &#947;-H2AX  foci are detected. During the 3- to 5-h window when  AtSPO11-1 foci rapidly disappear, there is an  equally swift accumulation of &#947;-H2AX to a maximum  of >50 diffuse foci. The level of &#947;H2AX then remains  constant for a further 13 h before undergoing a  gradual decrease to 10–20 foci in the 18- to 24-h post-S  period. By 30 h the foci have disappeared from the chromatin.	gamma histone variant H2AX;(source:Araport11)
AT1G54610.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G54790.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G54700.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G54620.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G54710.1	protein_coding	homolog of yeast autophagy 18 (ATG18) H		autophagy 18h-like protein;(source:Araport11)
AT1G54630.1	protein_coding	acyl carrier protein 3	encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Gene expression is not regulated by light.	acyl carrier protein 3;(source:Araport11)
AT1G54640.1	protein_coding	F-box family protein-related		F-box family protein-like protein;(source:Araport11)
AT1G54650.1	protein_coding	Methyltransferase family protein		Methyltransferase family protein;(source:Araport11)
AT1G54720.1	protein_coding	early-responsive to dehydration protein-related / ERD protein-related		early-responsive to dehydration protein-related / ERD protein-like protein;(source:Araport11)
AT1G54730.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G54740.1	protein_coding	Protein of unknown function (DUF3049)		FANTASTIC four-like protein (DUF3049);(source:Araport11)
AT1G21070.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT1G21160.1	protein_coding	eukaryotic translation initiation factor 2 (eIF-2) family protein		eukaryotic translation initiation factor 2 (eIF-2) family protein;(source:Araport11)
AT1G21060.1	protein_coding	Protein of unknown function, DUF547		Serine/Threonine-kinase, putative (Protein of unknown function, DUF547);(source:Araport11)
AT1G21140.1	protein_coding	Vacuolar iron transporter (VIT) family protein	The gene encodes nodulin-like1 whose transcript abundance was repressed under conditions of Fe-deficient growth.	Vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT1G21050.1	protein_coding	Protein of unknown function, DUF617		MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT1G21130.1	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT1G21120.1	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT1G21110.1	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT1G21020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1);(source:TAIR10)
AT1G21100.1	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT1G21150.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G21090.1	protein_coding	Cupredoxin superfamily protein		Cupredoxin superfamily protein;(source:Araport11)
AT1G21080.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G22720.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G22710.1	protein_coding	sucrose-proton symporter 2	Encodes for a high-affinity  transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transport a wide range of physiological and synthetic glucose conjugates with both &#945;- or &#946;-linkage.	sucrose-proton symporter 2;(source:Araport11)
AT1G22700.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G22690.1	protein_coding	Gibberellin-regulated family protein		Gibberellin-regulated family protein;(source:Araport11)
AT1G22800.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G22680.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G22790.1	protein_coding			Low affinity potassium transport system protein;(source:Araport11)
AT1G22670.1	protein_coding	Protease-associated (PA) RING/U-box zinc finger family protein		Protease-associated (PA) RING/U-box zinc finger family protein;(source:Araport11)
AT1G22780.1	protein_coding	Ribosomal protein S13/S18 family	S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation.	Ribosomal protein S13/S18 family;(source:Araport11)
AT1G22660.1	protein_coding	Polynucleotide adenylyltransferase family protein		Polynucleotide adenylyltransferase family protein;(source:Araport11)
AT1G22770.1	protein_coding	gigantea protein (GI)	Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Located in the nucleus. Regulates several developmental  processes, including photoperiod-mediated flowering, phytochrome B signaling,  circadian clock, carbohydrate metabolism, and cold stress response.  The gene's transcription is controlled by the circadian clock and it is post-transcriptionally regulated by light and dark. Forms a complex with FKF1 on the CO promoter to regulate CO expression. The mRNA is cell-to-cell mobile.	gigantea protein (GI);(source:Araport11)
AT1G22650.1	protein_coding	Plant neutral invertase family protein		Plant neutral invertase family protein;(source:Araport11)
AT1G22730.1	protein_coding	MA3 domain-containing protein		MA3 domain-containing protein;(source:Araport11)
AT1G22760.1	protein_coding	poly(A) binding protein 3	Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation.  Expression detected only in floral organs.	poly(A) binding protein 3;(source:Araport11)
AT1G22750.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G22810.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. Overexpression leands to delayed senescence and delayed flowering.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G22740.1	protein_coding	RAB GTPase homolog  G3B	GTP-binding protein Rab7	RAB GTPase homolog G3B;(source:Araport11)
AT1G76120.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT1G76210.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		DUF241 domain protein, putative (DUF241);(source:Araport11)
AT1G76240.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		DUF241 domain protein (DUF241);(source:Araport11)
AT1G76220.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		hypothetical protein (DUF241);(source:Araport11)
AT1G76230.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G76180.1	protein_coding	Dehydrin family protein	Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress.  Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3.  ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated.	Dehydrin family protein;(source:Araport11)
AT1G76070.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G76150.1	protein_coding	enoyl-CoA hydratase 2	Encodes a monofunctional enoyl-CoA hydratase 2, involved in the degradation of even cis-unsaturated fatty acids, gene expression is enhanced during the first 2 days of germination, as well as in senescent leaves.	enoyl-CoA hydratase 2;(source:Araport11)
AT1G76170.1	protein_coding	2-thiocytidine tRNA biosynthesis protein, TtcA		2-thiocytidine tRNA biosynthesis protein, TtcA;(source:Araport11)
AT1G76090.1	protein_coding	sterol methyltransferase 3	Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway.	sterol methyltransferase 3;(source:Araport11)
AT1G76250.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G76100.1	protein_coding	plastocyanin 1	One of two Arabidopsis plastocyanin genes. Expressed at 1/10th level of PETE2. Does not respond to increased copper levels and is thought to be the isoform that participates in electron transport under copper-limiting conditions. Mutation of this gene does not have obvious effect on photosynthesis.	plastocyanin 1;(source:Araport11)
AT1G76200.1	protein_coding			NADH dehydrogenase ubiquinone 1 beta subcomplex subunit;(source:Araport11)
AT1G76160.1	protein_coding	SKU5 similar 5		SKU5 similar 5;(source:Araport11)
AT1G76080.1	protein_coding	chloroplastic drought-induced stress protein of 32 kD	Encodes a thioredoxin localized in chloroplast stroma.  Known as CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD).	chloroplastic drought-induced stress protein of 32 kD;(source:Araport11)
AT1G76130.1	protein_coding	alpha-amylase-like 2	alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis.	alpha-amylase-like 2;(source:Araport11)
AT1G76140.1	protein_coding	Prolyl oligopeptidase family protein		Prolyl oligopeptidase family protein;(source:Araport11)
AT1G76190.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G76110.1	protein_coding	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain		HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT1G23850.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G23860.1	protein_coding	RS-containing zinc finger protein 21	Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RS-containing zinc finger protein 21;(source:Araport11)
AT1G23930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1);(source:TAIR10)
AT1G23870.1	protein_coding	trehalose-phosphatase/synthase 9	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. The mRNA is cell-to-cell mobile.	trehalose-phosphatase/synthase 9;(source:Araport11)
AT1G24030.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G23880.1	protein_coding	NHL domain-containing protein		NHL domain-containing protein;(source:Araport11)
AT1G23950.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT1G23890.1	protein_coding	NHL domain-containing protein		NHL domain-containing protein;(source:Araport11)
AT1G23960.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT1G24050.1	protein_coding	RNA-processing, Lsm domain		RNA-processing, Lsm domain-containing protein;(source:Araport11)
AT1G23970.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT1G24060.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G23900.1	protein_coding	gamma-adaptin 1	Encodes large subunit of the heterotetrameric adaptor protein complex AP-1. AP-1 is required for clathrin coated vesicles budding from the trans-Golgi network or plasma membrane	gamma-adaptin 1;(source:Araport11)
AT1G23980.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G23910.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G23990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.0e-30 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G24070.1	protein_coding	cellulose synthase-like A10	encodes a gene similar to cellulose synthase	cellulose synthase-like A10;(source:Araport11)
AT1G24000.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G24010.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G24020.1	protein_coding	MLP-like protein 423		MLP-like protein 423;(source:Araport11)
AT1G24040.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G08310.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G08250.1	protein_coding	arogenate dehydratase 6	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Although this enzyme has sequence similarity to prephenate dehydratases, it is 98 times more active with arogenate than prephenate in enzymatic assays.	arogenate dehydratase 6;(source:Araport11)
AT1G08260.1	protein_coding	DNA polymerase epsilon catalytic subunit	Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.	DNA polymerase epsilon catalytic subunit;(source:Araport11)
AT1G08270.1	protein_coding			vacuolar protein sorting-associated protein;(source:Araport11)
AT1G08280.1	protein_coding	Glycosyltransferase family 29 (sialyltransferase) family protein	Encodes a glycosyltransferase (GT) GALT29A, which belongs to the Carbohydrate Active Enzyme family GT29. GALT29A co-expresses with other arabinogalactan GTs, GALT31A and GLCAT14A. The recombinant GALT29A expressed in Nicotiana benthamiana demonstrated a galactosyltransferase activity, transferring galactose from UDP-galactose to a mixture of various oligosaccharides derived from arabinogalactan proteins.	Glycosyltransferase family 29 (sialyltransferase) family protein;(source:Araport11)
AT1G08180.1	protein_coding			cyclin-dependent kinase inhibitor;(source:Araport11)
AT1G08290.1	protein_coding	WIP domain protein 3		WIP domain protein 3;(source:Araport11)
AT1G08190.1	protein_coding	vacuolar protein sorting 41	Might be involved in protein sorting to the vacuole. The mRNA is cell-to-cell mobile.	vacuolar protein sorting 41;(source:Araport11)
AT1G08300.1	protein_coding	no vein-like		no vein-like protein;(source:Araport11)
AT1G08200.1	protein_coding	UDP-D-apiose/UDP-D-xylose synthase 2	Encodes a putative UDP-D-apiose/UPD-D-xylose synthetase.	UDP-D-apiose/UDP-D-xylose synthase 2;(source:Araport11)
AT1G08210.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G08220.1	protein_coding			ATPase complex subunit;(source:Araport11)
AT1G11360.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT1G11460.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G11470.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G11440.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G11450.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G11540.1	protein_coding	Sulfite exporter TauE/SafE family protein		Sulfite exporter TauE/SafE family protein;(source:Araport11)
AT1G11570.1	protein_coding	NTF2-like		NTF2-like protein;(source:Araport11)
AT1G11500.1	protein_coding	Protein of unknown function (DUF1218)	DUF1218 family member.	transmembrane protein, putative (DUF1218);(source:Araport11)
AT1G11580.1	protein_coding	methylesterase PCR A		methylesterase PCR A;(source:Araport11)
AT1G11380.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT1G11560.1	protein_coding	Oligosaccharyltransferase complex/magnesium transporter family protein		Oligosaccharyltransferase complex/magnesium transporter family protein;(source:Araport11)
AT1G11480.1	protein_coding	eukaryotic translation initiation factor-related		eukaryotic translation initiation factor-like protein;(source:Araport11)
AT1G11390.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G11490.1	protein_coding	zinc finger (C2H2 type) family protein		zinc finger (C2H2 type) family protein;(source:Araport11)
AT1G11510.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT1G11340.1	protein_coding	S-locus lectin protein kinase family protein		G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT1G11400.1	protein_coding	partner of Y14-MAGO	The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.	partner of Y14-MAGO;(source:Araport11)
AT1G11590.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT1G11520.1	protein_coding	pliceosome associated protein-related		pliceosome associated protein-like protein;(source:Araport11)
AT1G11430.1	protein_coding	plastid developmental protein DAG, putative	Encodes a protein involved in RNA editing in chloroplasts. The mRNA is cell-to-cell mobile.	plastid developmental protein DAG;(source:Araport11)
AT1G11410.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G11530.1	protein_coding	C-terminal cysteine residue is changed to a serine 1	Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity. The mRNA is cell-to-cell mobile.	C-terminal cysteine residue is changed to a serine 1;(source:Araport11)
AT1G11420.1	protein_coding	DOMAIN OF UNKNOWN FUNCTION 724 2	Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins.	agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2);(source:Araport11)
AT1G11350.1	protein_coding	S-domain-1 13		S-domain-1 13;(source:Araport11)
AT1G11370.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G67970.1	protein_coding	heat shock transcription factor  A8	member of Heat Stress Transcription Factor (Hsf) family	heat shock transcription factor A8;(source:Araport11)
AT1G68050.1	protein_coding	flavin-binding, kelch repeat, f box 1	Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression.	flavin-binding, kelch repeat, f box 1;(source:Araport11)
AT1G67960.1	protein_coding		POD1 is involved in pollen tube guidence and early embryo patterning.	POLLEN DEFECTIVE IN GUIDANCE-like protein;(source:Araport11)
AT1G68040.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G67880.1	protein_coding	beta-1,4-N-acetylglucosaminyltransferase family protein		beta-1,4-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G68130.1	protein_coding	indeterminate(ID)-domain 14	Encodes the longer of two splice variants of a transcription factor involved in regulating starch metabolism in response to cold.	indeterminate(ID)-domain 14;(source:Araport11)
AT1G68030.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G67870.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT1G67950.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	ACD11 binding partner, negatively regulates ROS-mediated defense response.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G68020.1	protein_coding	UDP-Glycosyltransferase / trehalose-phosphatase family protein	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain and a trehalose phosphatase (TPP)-like domain. It can complement a yeast mutant lacking both of these activities suggesting that this is a bifunctional enzyme.	UDP-Glycosyltransferase / trehalose-phosphatase family protein;(source:Araport11)
AT1G67860.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G67940.1	protein_coding	non-intrinsic ABC protein 3	member of NAP subfamily The mRNA is cell-to-cell mobile.	non-intrinsic ABC protein 3;(source:Araport11)
AT1G68010.1	protein_coding	hydroxypyruvate reductase	Encodes hydroxypyruvate reductase.	hydroxypyruvate reductase;(source:Araport11)
AT1G68120.1	protein_coding	basic pentacysteine 3		BASIC PENTACYSTEINE protein;(source:Araport11)
AT1G68000.1	protein_coding	phosphatidylinositol synthase 1	phosphatidylinositol synthase 1	phosphatidylinositol synthase 1;(source:Araport11)
AT1G67930.1	protein_coding	Golgi transport complex protein-related		Golgi transport complex protein-like protein;(source:Araport11)
AT1G68110.1	protein_coding	ENTH/ANTH/VHS superfamily protein	An ENTH (Epsin NH2 terminal homology)/ANTH/VHS superfamily protein with adenylate cyclase activity  and a role in clathrin assembly and endocytosis.	ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT1G67990.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G67920.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G68100.1	protein_coding	ZIP metal ion transporter family	member of IAA-alanine resistance protein 1	ZIP metal ion transporter family;(source:Araport11)
AT1G67980.1	protein_coding	caffeoyl-CoA 3-O-methyltransferase	Encodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase. Methyltransferase in the lignin biosynthetic pathway.	caffeoyl-CoA 3-O-methyltransferase;(source:Araport11)
AT1G67910.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G68090.1	protein_coding	annexin 5	Encodes a calcium-binding protein annexin (AnnAt5). Plays a vital role in pollen development via Ca2+ dependent membrane trafficking.	annexin 5;(source:Araport11)
AT1G67900.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G68080.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G67890.1	protein_coding	PAS domain-containing protein tyrosine kinase family protein	Encodes a protein with similarity to RAF MAP kinases. Based on loss of function phenotype, RAF11 appears to be involved in mediating ABA responses such as dormancy and environmental stress. Expressed in most plant tissues but excluded from root tips and young leaves.	PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT1G68070.1	protein_coding	Zinc finger, C3HC4 type (RING finger) family protein		Zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT1G68060.1	protein_coding	microtubule-associated proteins 70-1	Encodes a microtubule associated protein (MAP70-1). Expressed in all tissues.	microtubule-associated proteins 70-1;(source:Araport11)
AT1G65200.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT1G65110.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT1G65120.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT1G65240.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G65130.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT1G65190.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G65140.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT1G65150.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT1G65210.1	protein_coding	Galactose-binding protein		Galactose-binding protein;(source:Araport11)
AT1G65160.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT1G65220.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G65170.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT1G65230.1	protein_coding	Uncharacterized conserved protein (DUF2358)		transmembrane protein, putative (DUF2358);(source:Araport11)
AT1G65180.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G15950.1	protein_coding	cinnamoyl coa reductase 1	Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis. The mRNA is cell-to-cell mobile.	cinnamoyl coa reductase 1;(source:Araport11)
AT1G16140.1	pseudogene		Encodes a predicted WAK-like receptor-like kinase with a cytoplasmic Ser/Thr protein kinase domain and an extracellular domain with EGF-like repeats.	pseudogene of wall associated kinase-like 5;(source:Araport11)
AT1G15960.1	protein_coding	NRAMP metal ion transporter 6	member of Nramp2 family	NRAMP metal ion transporter 6;(source:Araport11)
AT1G16150.1	protein_coding	wall associated kinase-like 4	Encodes a WAK-like receptor-like kinase with a cytoplasmic Ser/Thr protein kinase domain and an extracellular domain with EGF-like repeats. Likely involved in Arabidopsis root mineral responses to Zn2+, Cu2+, K+, Na+ and Ni+. The mRNA is cell-to-cell mobile.	wall associated kinase-like 4;(source:Araport11)
AT1G15970.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT1G15980.1	protein_coding	NDH-dependent cyclic electron flow 1	encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.	NDH-dependent cyclic electron flow 1;(source:Araport11)
AT1G16030.1	protein_coding	heat shock protein 70B		heat shock protein 70B;(source:Araport11)
AT1G16040.1	protein_coding			phosphatidylinositol-glycan biosynthesis class F-like protein;(source:Araport11)
AT1G16160.1	protein_coding	wall associated kinase-like 5	WAK-like kinase The mRNA is cell-to-cell mobile.	wall associated kinase-like 5;(source:Araport11)
AT1G16060.1	protein_coding	ARIA-interacting double AP2 domain protein	Encodes ADAP, an AP2-domain protein that interacts with ARIA.  ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.	ARIA-interacting double AP2 domain protein;(source:Araport11)
AT1G16170.1	protein_coding			ephrin-A3 protein;(source:Araport11)
AT1G15910.1	protein_coding	XH/XS domain-containing protein	Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).	XH/XS domain-containing protein;(source:Araport11)
AT1G16090.1	protein_coding	wall associated kinase-like 7	Encodes a truncated WAK-like kinase that is predicted to be a secreted protein.	wall associated kinase-like 7;(source:Araport11)
AT1G16070.1	protein_coding	tubby like protein 8	Member of TLP family	tubby like protein 8;(source:Araport11)
AT1G15990.1	protein_coding	cyclic nucleotide gated channel 7	Encodes a plasma membrane localized member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.	cyclic nucleotide gated channel 7;(source:Araport11)
AT1G16180.1	protein_coding	Serinc-domain containing serine and sphingolipid biosynthesis protein		Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT1G16000.1	protein_coding		Member of the Arabidopsis 7-kDa OEP family. Tail-anchored (TA) membrane protein which possesses a single C-terminal transmembrane domain targeting post-translationally to plastids.	GAG1At protein;(source:Araport11)
AT1G16080.1	protein_coding			nuclear protein;(source:Araport11)
AT1G16110.1	protein_coding	wall associated kinase-like 6	Encodes a WAK-like receptor-like kinase with a cytoplasmic Ser/Thr protein kinase domain and an extracellular domain with EGF-like repeats. It has been shown to be localized to the cell wall.	wall associated kinase-like 6;(source:Araport11)
AT1G15920.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Deadenylase.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G15930.1	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT1G16010.1	protein_coding	magnesium transporter 2	Transmembrane magnesium transporter. One of nine family members.	magnesium transporter 2;(source:Araport11)
AT1G16020.1	protein_coding	Protein of unknown function (DUF1712)		vacuolar fusion protein (DUF1712);(source:Araport11)
AT1G16120.1	protein_coding	wall associated kinase-like 1	Encodes a WAK-like receptor-like kinase with a cytoplasmic Ser/Thr protein kinase domain and an extracellular domain with EGF-like repeats.	wall associated kinase-like 1;(source:Araport11)
AT1G15940.1	protein_coding	Tudor/PWWP/MBT superfamily protein	One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT1G16130.1	protein_coding	wall associated kinase-like 2	Encodes a WAK-like receptor-like kinase with a cytoplasmic Ser/Thr protein kinase domain and an extracellular domain with EGF-like repeats.	wall associated kinase-like 2;(source:Araport11)
AT1G26630.1	protein_coding	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. The mRNA is cell-to-cell mobile.	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein;(source:Araport11)
AT1G26730.1	protein_coding	EXS (ERD1/XPR1/SYG1) family protein		EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT1G26640.1	protein_coding	Amino acid kinase family protein	Encodes a cytosolic isopentenyl phosphate kinase that plays an important role in regulating the formation of both MVA (mevalonic acid) and MEP (methylerythritol phosphate) pathway-derived terpenoid compounds by controlling the ratio of IP/DMAP to IPP/DMAPP.  IPP and DMAPP are the universal C5 building blocks of all natural terpenoids. IPK enhances terpenoid formation by returning IP/DMAP to the terpenoid biosynthetic network.	Amino acid kinase family protein;(source:Araport11)
AT1G26740.1	protein_coding	Ribosomal L32p protein family		Ribosomal L32p protein family;(source:Araport11)
AT1G26650.1	protein_coding			Son of sevenless protein;(source:Araport11)
AT1G26670.1	protein_coding	Vesicle transport v-SNARE family protein	member of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation  (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Involved in protein trafficking to protein storage vacuoles.	Vesicle transport v-SNARE family protein;(source:Araport11)
AT1G26750.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G26660.1	protein_coding	Prefoldin chaperone subunit family protein		Prefoldin chaperone subunit family protein;(source:Araport11)
AT1G26800.1	protein_coding	RING/U-box superfamily protein	MPSR1 is  cytoplasmic E3 ligase that senses misfolded  proteins independently of chaperones and targets those proteins for degradation via the 26S proteasome.	RING/U-box superfamily protein;(source:Araport11)
AT1G26760.1	protein_coding	SET domain protein 35		SET domain protein 35;(source:Araport11)
AT1G26680.1	protein_coding	transcriptional factor B3 family protein		transcriptional factor B3 family protein;(source:Araport11)
AT1G26770.1	protein_coding	expansin A10	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A10;(source:Araport11)
AT1G26690.1	protein_coding	emp24/gp25L/p24 family/GOLD family protein		emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT1G26780.1	protein_coding	myb domain protein 117	Encodes LOF1 (LATERAL ORGAN FUSION1), a MYB-domain transcription factor expressed in organ boundaries.  Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF2 (At1g69560).	myb domain protein 117;(source:Araport11)
AT1G26700.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT1G26790.1	protein_coding	Dof-type zinc finger DNA-binding family protein		Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT1G26710.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G26720.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G26810.1	protein_coding	galactosyltransferase1	Encodes a protein with &#946;1,3-galactosyltransferase activity involved in the biosynthesis of the Lewis a epitope of certain glycoproteins.	galactosyltransferase1;(source:Araport11)
AT1G48840.1	protein_coding	Plant protein of unknown function (DUF639)		Plant protein of unknown function (DUF639);(source:TAIR10)
AT1G61540.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G61590.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G61520.1	protein_coding	photosystem I light harvesting complex gene 3	PSI type III chlorophyll a/b-binding protein (Lhca3*1) The mRNA is cell-to-cell mobile.	PSI type III chlorophyll a/b-binding protein;(source:Araport11)
AT1G61580.1	protein_coding	R-protein L3 B		R-protein L3 B;(source:Araport11)
AT1G61510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);transposase IS4 family protein,  contains Pfam profile: PF01609 transposase DDE domain;(source:TAIR10)
AT1G61560.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT1G61500.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61630.1	protein_coding	equilibrative nucleoside transporter 7		equilibrative nucleoside transporter 7;(source:Araport11)
AT1G61620.1	protein_coding	phosphoinositide binding	Encodes a RING-finger E3 ubiquitin ligase that plays a major role in maintaining COP1 homeostasis by targeting COP1 for ubiquitination and degradation in dark-grown seedlings. The mRNA is cell-to-cell mobile.	phosphoinositide binding protein;(source:Araport11)
AT1G61640.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G61610.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61600.1	protein_coding	Protein of unknown function (DUF1262)		DUF1262 family protein (DUF1262);(source:Araport11)
AT1G61570.1	protein_coding	translocase of the inner mitochondrial membrane 13	Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.	translocase of the inner mitochondrial membrane 13;(source:Araport11)
AT1G61550.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G01010.1	protein_coding	NAC domain containing protein 1		NAC domain containing protein 1;(source:Araport11)
AT1G01020.1	protein_coding	Arv1-like protein		ARV1 family protein;(source:Araport11)
AT1G01110.1	protein_coding	IQ-domain 18	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 18;(source:Araport11)
AT1G01030.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT1G01120.1	protein_coding	3-ketoacyl-CoA synthase 1	Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.	3-ketoacyl-CoA synthase 1;(source:Araport11)
AT1G01040.1	protein_coding	dicer-like 1	Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. The mRNA is cell-to-cell mobile.	dicer-like 1;(source:Araport11)
AT1G01050.1	protein_coding	pyrophosphorylase 1	Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate.	pyrophosphorylase 1;(source:Araport11)
AT1G01060.1	protein_coding	Homeodomain-like superfamily protein	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	Homeodomain-like superfamily protein;(source:Araport11)
AT1G01080.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G01090.1	protein_coding	pyruvate dehydrogenase E1 alpha	pyruvate dehydrogenase E1 alpha subunit	pyruvate dehydrogenase E1 alpha;(source:Araport11)
AT1G01100.1	protein_coding	60S acidic ribosomal protein family	Co-orthologous gene of large ribosomal subunit protein RPP1.	60S acidic ribosomal protein family;(source:Araport11)
AT1G01070.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	Encodes a plasma membrane-localized amino acid transporter likely involved in amino acid export in the developing seed.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G05460.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G05400.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G05420.1	protein_coding	ovate family protein 12		ovate family protein 12;(source:Araport11)
AT1G05470.1	protein_coding	DNAse I-like superfamily protein	Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays.	DNAse I-like superfamily protein;(source:Araport11)
AT1G05380.1	protein_coding	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein		Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT1G05450.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G05410.1	protein_coding	Protein of unknown function (DUF1423)		CDPK adapter, putative (DUF1423);(source:Araport11)
AT1G05430.1	protein_coding		Hypothetical protein, expression induced by Al.	hypothetical protein;(source:Araport11)
AT1G05440.1	protein_coding	C-8 sterol isomerases		C-8 sterol isomerase;(source:Araport11)
AT1G21900.1	protein_coding	emp24/gp25L/p24 family/GOLD family protein	Encodes an ER-localized p24 protein.  Interacts with p24beta2 at ER export sites for ER exit and coupled transport to the Golgi apparatus. Once in the Golgi, p24delta5 interacts very efficiently with the COPI machinery for retrograde transport back to the ER.	emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT1G21910.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G21980.1	protein_coding	phosphatidylinositol-4-phosphate 5-kinase 1	Type I phosphatidylinositol-4-phosphate 5-kinase. Preferentially phosphorylates PtdIns4P. Induced by water stress and abscisic acid in Arabidopsis thaliana. Expressed in procambial cells of leaves, flowers and roots. A N-terminal Membrane Occupation and Recognition Nexus (MORN)affects enzyme activity and distribution.	phosphatidylinositol-4-phosphate 5-kinase 1;(source:Araport11)
AT1G21920.1	protein_coding	Histone H3 K4-specific methyltransferase SET7/9 family protein	MRF1 is related to SET7/9 proteins but contains an atypical SET domain. It is expressed in phloem and mutants have a weak late flowering phenotype.	Histone H3 K4-specific methyltransferase SET7/9 family protein;(source:Araport11)
AT1G21940.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G21930.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G21860.1	protein_coding	SKU5 similar 7		SKU5 similar 7;(source:Araport11)
AT1G21870.1	protein_coding	golgi nucleotide sugar transporter 5	Encodes a Golgi-localized nucleotide-sugar transporter.	golgi nucleotide sugar transporter 5;(source:Araport11)
AT1G21880.1	protein_coding	lysm domain GPI-anchored protein 1 precursor	Encodes a lysin-motif protein mediating bacterial peptidoglycan sensing and immunity to bacterial infection. Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant. It contains a C-terminal GPI anchor signal and is an ortholog of OsLYP4 and OsLYP6.	lysm domain GPI-anchored protein 1 precursor;(source:Araport11)
AT1G21890.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G21950.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G21960.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G21970.1	protein_coding	Histone superfamily protein	Transcriptional activator of genes required for both embryo maturation and cellular differentiation. Sequence is similar to HAP3 subunit of the CCAAT-box binding factor. HAP3 subunit is divided into three domains: an amino-terminal A domain, a central B domain, and a carboxyl-terminal C domain. LEC1 shared high similarity with other HAP3 homologs only in central, B domain. LEC1 is required for the specification of cotyledon identity and the completion of embryo maturation. It was sufficient to induce embryogenic programs in vegetative cells, suggesting that LEC1 is a major embryonic regulator that mediates the switch between embryo and vegetative development. Mutants are desiccation intolerant, have trichomes on cotyledons and exhibit precocious meristem activation. Levels of the ABI3 and FUS3 transcripts were significantly reduced in developing siliques of the lec1-1 mutants, indicating that LEC1 down-regulates FUS3 and ABI3.When LEC1 is overexpressed from an inducible promoter, the expression of numerous genes involved in fatty acid biosynthesis is increased suggesting a role in positive regulation of FA biosynthesis. LEC is required for FLC  activation in embryos following vernalization.	Histone superfamily protein;(source:Araport11)
AT1G23160.1	protein_coding	Auxin-responsive GH3 family protein		Auxin-responsive GH3 family protein;(source:Araport11)
AT1G23150.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G23140.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	Expression is upregulated in the shoot of cax1/cax3 mutant.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G23130.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G23120.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G23180.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G23100.1	protein_coding	GroES-like family protein		GroES-like family protein;(source:Araport11)
AT1G23110.1	protein_coding			fold protein;(source:Araport11)
AT1G23090.1	protein_coding	sulfate transporter 91	Encodes AST91 mRNA for sulfate transporter.	sulfate transporter 91;(source:Araport11)
AT1G23080.1	protein_coding	Auxin efflux carrier family protein	Encodes a novel component of auxin efflux that is located  apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo.  It is also involved in pattern specification during root development.  In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific  to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing  cellular auxin efflux.	Auxin efflux carrier family protein;(source:Araport11)
AT1G23070.1	protein_coding	Protein of unknown function (DUF300)		organic solute transporter ostalpha protein (DUF300);(source:Araport11)
AT1G23060.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G23170.1	protein_coding	Protein of unknown function DUF2359, transmembrane		transmembrane protein (Protein of unknown function DUF2359, transmembrane);(source:Araport11)
AT1G68500.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G68530.1	protein_coding	3-ketoacyl-CoA synthase 6	Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 6;(source:Araport11)
AT1G68510.1	protein_coding	LOB domain-containing protein 42	LOB domain protein.	LOB domain-containing protein 42;(source:Araport11)
AT1G68540.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G68520.1	protein_coding	B-box type zinc finger protein with CCT domain		B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT1G68550.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G68460.1	protein_coding	isopentenyltransferase 1	Encodes a putative adenylate isopentenyltransferase. It catalyzes the formation of isopentenyladenosine 5'-monophosphate (iPMP) from AMP and dimethylallylpyrophosphate (DMAPP), but it has a lower Km for ADP and likely works using ADP or ATP in plants. It is involved in cytokinin biosynthesis.	isopentenyltransferase 1;(source:Araport11)
AT1G68470.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT1G68480.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue.  Together with NUB, it is involved in stamen and carpel development.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G68490.1	protein_coding			translocase subunit seca;(source:Araport11)
AT1G66360.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G66280.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G66370.1	protein_coding	myb domain protein 113	Encodes a member of the MYB family of transcription factors. Involved in regulation of anthocyanin biosynthesis. Affects the expression of enzymes involved in later steps of anthocyanin biosynthesis.	myb domain protein 113;(source:Araport11)
AT1G66290.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G66380.1	protein_coding	myb domain protein 114	Encodes a member of the MYB family of transcription factors. Involved in regulation of anthocyanin biosynthesis. Affects the expression of enzymes involved in later steps of anthocyanin biosynthesis	myb domain protein 114;(source:Araport11)
AT1G66300.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G66310.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G66390.1	protein_coding	myb domain protein 90	production of anthocyanin pigment 2 protein (PAP2)	myb domain protein 90;(source:Araport11)
AT1G66320.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G66400.1	protein_coding	calmodulin like 23	Encodes a calmodulin-like protein.  Regulates nitric oxide levels and transition to flowering.	calmodulin like 23;(source:Araport11)
AT1G66330.1	protein_coding	senescence-associated family protein		senescence-associated family protein;(source:Araport11)
AT1G66340.1	protein_coding	Signal transduction histidine kinase, hybrid-type, ethylene sensor	Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1. Mutations in ETR1 block ethylene stimulation of flavonol synthesis.	Signal transduction histidine kinase, hybrid-type, ethylene sensor;(source:Araport11)
AT1G66350.1	protein_coding	RGA-like 1	Negative regulator of GA responses, member of  GRAS family of transcription factors.  Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development.	RGA-like 1;(source:Araport11)
AT1G08400.1	protein_coding	RINT-1 / TIP-1 family		RINT-1 / TIP-1 family;(source:Araport11)
AT1G08420.1	protein_coding	BRI1 suppressor 1 (BSU1)-like 2		BRI1 suppressor 1 (BSU1)-like 2;(source:Araport11)
AT1G08430.1	protein_coding	aluminum-activated malate transporter 1	Encodes a Al-activated malate efflux transporter. It is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes  in AtALMT1 gene expression (as a result malate release  is totally inhibited). AtALMT1 transcription was clearly induced by indole-3-acetic acid, abscisic acid, low pH, hydrogen peroxide and flg22. STOP1 and CAMTA2 transcription factors are involved in Al-inducible expression of AtALMT1 and both proteins bind to the AtALMT1 promoter.	aluminum-activated malate transporter 1;(source:Araport11)
AT1G08510.1	protein_coding	fatty acyl-ACP thioesterases B	Encodes an acyl-acyl carrier protein thioesterase. Hydrolyzes primarily saturated acyl-ACPs with chain lengths that vary between 8 and 18 carbons. Involved in saturated fatty acid synthesis. Nuclear-encoded, plastid-targeted globular protein that is functional as dimer.	fatty acyl-ACP thioesterases B;(source:Araport11)
AT1G08440.1	protein_coding	Aluminium activated malate transporter family protein		aluminum activated malate transporter family protein;(source:Araport11)
AT1G08520.1	protein_coding	ALBINA 1	Encodes the CHLD subunit of the Mg-chelatase enzyme involved in chlorophyll biosynthesis. Lines carrying recessive mutations of this locus are white and seedling lethal.	ALBINA 1;(source:Araport11)
AT1G08500.1	protein_coding	early nodulin-like protein 18		early nodulin-like protein 18;(source:Araport11)
AT1G08350.1	protein_coding	Endomembrane protein 70 protein family		Endomembrane protein 70 protein family;(source:Araport11)
AT1G08360.1	protein_coding	Ribosomal protein L1p/L10e family		Ribosomal protein L1p/L10e family;(source:Araport11)
AT1G08450.1	protein_coding	calreticulin 3	Encodes one of three Arabidopsis calreticulins.   In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the  presence of elf18, and EFR accumulation and signalling.	calreticulin 3;(source:Araport11)
AT1G08370.1	protein_coding	decapping 1	Encodes DCP1 involved in mRNA decapping.  DCP1 forms a mRNA decapping complex with DCP2 (At5g13570) and VCS (VARICOSE) (At3g13300). However, unlike DCP2, DCP1 itself does not have mRNA decapping activity in vitro.  DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies.  Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP2.	decapping 1;(source:Araport11)
AT1G08460.1	protein_coding	histone deacetylase 8		histone deacetylase 8;(source:Araport11)
AT1G08380.1	protein_coding	photosystem I subunit O	Encodes subunit O of photosystem I.	photosystem I subunit O;(source:Araport11)
AT1G08470.1	protein_coding	strictosidine synthase-like 3	Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.	strictosidine synthase-like 3;(source:Araport11)
AT1G08390.1	protein_coding		Involved in preserving the stability of 45S  rDNA repeats.	recQ-mediated instability-like protein;(source:Araport11)
AT1G08480.1	protein_coding	Encode subunit 6 of mitochondrial complex II and participates in the respiratory chain. It contributes to anchoring succinate dehydrogenase to the inner mitochondrial membrane. The mRNA is cell-to-cell mobile.	Encodes subunit 6 of mitochondrial complex II (succinate dehydrogenase complex) and participates in the respiratory chain. It contributes to anchoring succinate dehydrogenase to the inner mitochondrial membrane. The mRNA is cell-to-cell mobile.	succinate dehydrogenase subunit;(source:Araport11)
AT1G08490.1	protein_coding	chloroplastic NIFS-like cysteine desulfurase	Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental  sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation.	chloroplastic NIFS-like cysteine desulfurase;(source:Araport11)
AT1G08410.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a large 60S subunit nuclear export GTPase 1 that is required for 40S maturation and is involved in ribosome biogenesis and affects multiple auxin-regulated development processes.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G10010.1	protein_coding	amino acid permease 8	Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases.  Most closely related to AAP1 (75%) identity.	amino acid permease 8;(source:Araport11)
AT1G10090.1	protein_coding	Early-responsive to dehydration stress protein (ERD4)		Early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT1G10020.1	protein_coding	Protein of unknown function (DUF1005)		formin-like protein (DUF1005);(source:Araport11)
AT1G10100.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G10030.1	protein_coding	homolog of yeast ergosterol28		ergosterol biosynthesis protein;(source:Araport11)
AT1G10110.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G10040.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G10120.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G10050.1	protein_coding	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein;(source:Araport11)
AT1G10130.1	protein_coding	endoplasmic reticulum-type calcium-transporting ATPase 3	Encodes a golgi localized P2A-type Ca2+ ATPase involved in Mn nutrition and homeostasis.	endoplasmic reticulum-type calcium-transporting ATPase 3;(source:Araport11)
AT1G10070.1	protein_coding	branched-chain amino acid transaminase 2	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Involved in cell wall development.	branched-chain amino acid transaminase 2;(source:Araport11)
AT1G10060.1	protein_coding	branched-chain amino acid transaminase 1	encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	branched-chain amino acid transaminase 1;(source:Araport11)
AT1G10000.1	protein_coding	Ribonuclease H-like superfamily protein		Ribonuclease H-like superfamily protein;(source:Araport11)
AT1G12120.1	protein_coding	Plant protein of unknown function (DUF863)		hypothetical protein (DUF863);(source:Araport11)
AT1G12150.1	protein_coding	Plant protein of unknown function (DUF827)		weak chloroplast movement under blue light protein (DUF827);(source:Araport11)
AT1G12240.1	protein_coding	Glycosyl hydrolases family 32 protein	Encodes a vacuolar invertase betaFruct4. betaFruct4 is transported from the endoplasmic reticulum  through the intermediate compartments as a membrane protein. The N-terminal cytoplasmic domain contains multiple sequence motifs that are involved at various stages in the trafficking of betaFruct4 from the ER to the central vacuole. The mRNA is cell-to-cell mobile.	Glycosyl hydrolases family 32 protein;(source:Araport11)
AT1G12140.1	protein_coding	flavin-monooxygenase glucosinolate S-oxygenase 5	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	flavin-monooxygenase glucosinolate S-oxygenase 5;(source:Araport11)
AT1G12130.1	protein_coding	Flavin-binding monooxygenase family protein	Encodes a flavin-containing monooxygenases involved in biosynthesis of aliphatic glucosinolates.	Flavin-binding monooxygenase family protein;(source:Araport11)
AT1G12210.1	protein_coding	RPS5-like 1	RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.	RPS5-like 1;(source:Araport11)
AT1G12200.1	protein_coding	Flavin-binding monooxygenase family protein	Putative flavin monooxygenase.	Flavin-binding monooxygenase family protein;(source:Araport11)
AT1G12220.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family	Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G12190.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G12230.1	protein_coding	Aldolase superfamily protein		Aldolase superfamily protein;(source:Araport11)
AT1G12180.1	protein_coding			14.7 kDa heat shock-like protein;(source:Araport11)
AT1G12170.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G12260.1	protein_coding	NAC 007	Encodes a NAC-domain transcription factor that is expressed in developing xylem. Over expression of this protein causes ectopic secondary cell wall growth. Complements some of the cell wall defects seen in SND1/NST1 double mutants.	NAC 007;(source:Araport11)
AT1G12250.1	protein_coding	Pentapeptide repeat-containing protein		Pentapeptide repeat-containing protein;(source:Araport11)
AT1G12160.1	protein_coding	Flavin-binding monooxygenase family protein	Encodes a flavin-containing monooxygenases involved in biosynthesis of aliphatic glucosinolates.	Flavin-binding monooxygenase family protein;(source:Araport11)
AT1G11260.1	protein_coding	sugar transporter 1	Encodes a H+/hexose cotransporter. The mRNA is cell-to-cell mobile.	sugar transporter 1;(source:Araport11)
AT1G11250.1	protein_coding	syntaxin of plants 125	member of SYP12 Gene Family	syntaxin of plants 125;(source:Araport11)
AT1G11330.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G11240.1	protein_coding			ribosomal RNA-processing protein;(source:Araport11)
AT1G11310.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter. It is a novel virulence target of the P. syringae type III secreted effector HopZ2.	Seven transmembrane MLO family protein;(source:Araport11)
AT1G11300.1	protein_coding	protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding	The annotation for At1g11300 in TAIR10 is incorrect. This locus has been split into two At1g11300 (symbol: EGM1) and At1g11305 (symbol: EGM2) (Olivier Loudet, personal communication, 2013-04-03). See Comment field for revised annotation.	G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT1G11290.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G11220.1	protein_coding	Protein of unknown function (DUF761)		cotton fiber, putative (DUF761);(source:Araport11)
AT1G11280.1	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G11210.1	protein_coding	Protein of unknown function (DUF761)		cotton fiber protein, putative (DUF761);(source:Araport11)
AT1G11270.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G11200.1	protein_coding	Protein of unknown function (DUF300)		organic solute transporter ostalpha protein (DUF300);(source:Araport11)
AT1G11230.1	protein_coding	Protein of unknown function (DUF761)		transmembrane protein, putative (DUF761);(source:Araport11)
AT1G11190.1	protein_coding	bifunctional nuclease i	Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).	bifunctional nuclease i;(source:Araport11)
AT1G11180.1	protein_coding	Secretory carrier membrane protein (SCAMP) family protein		Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT1G11170.1	protein_coding	Protein of unknown function (DUF707)		lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT1G11160.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G11320.1	protein_coding			GDSL esterase/lipase;(source:Araport11)
AT1G19240.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G19150.1	protein_coding	photosystem I light harvesting complex gene 6	PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA, The mRNA is cell-to-cell mobile.	PSI type II chlorophyll a/b-binding protein (Lhca2*1);(source:Araport11)
AT1G19250.1	protein_coding	flavin-dependent monooxygenase 1	FMO1 is required for full expression of TIR-NB-LRR conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.  FMO1 functions as a pipecolate N-hydroxylase and catalyzes the biochemical conversion of pipecolic acid to N-hydroxypipecolic acid (NHP). NHP systemically accumulates in the plant foliage and induces systemic acquired resistance to pathogen infection.	flavin-dependent monooxygenase 1;(source:Araport11)
AT1G19160.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G19260.1	protein_coding	TTF-type zinc finger protein with HAT dimerisation domain		TTF-type zinc finger protein with HAT dimerization domain-containing protein;(source:Araport11)
AT1G19170.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G19270.1	protein_coding	DA1	Encodes a ubiquitin-activated peptidase that is a member of a small (7 member) ubiquitin binding protein family. It appears to play a role in regulation of endoreduplication in leaf epidermal tissue.	DA1;(source:Araport11)
AT1G19180.1	protein_coding	jasmonate-zim-domain protein 1	JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably  by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. The mRNA is cell-to-cell mobile.	jasmonate-zim-domain protein 1;(source:Araport11)
AT1G19190.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G19200.1	protein_coding	Protein of unknown function (DUF581)		cyclin-dependent kinase, putative (DUF581);(source:Araport11)
AT1G19210.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G19220.1	protein_coding	auxin response factor 19	Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and , together with ARF7, is involved in the response to ethylene.  In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.	auxin response factor 19;(source:Araport11)
AT1G19230.1	protein_coding	Riboflavin synthase-like superfamily protein		Riboflavin synthase-like superfamily protein;(source:Araport11)
AT1G06360.1	protein_coding	Fatty acid desaturase family protein		Fatty acid desaturase family protein;(source:Araport11)
AT1G06390.1	protein_coding	GSK3/SHAGGY-like protein kinase 1	encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl, suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.	GSK3/SHAGGY-like protein kinase 1;(source:Araport11)
AT1G06380.1	protein_coding	Ribosomal protein L1p/L10e family		Ribosomal protein L1p/L10e family;(source:Araport11)
AT1G06330.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G06310.1	protein_coding	acyl-CoA oxidase 6	Encodes a putative acyl-CoA oxidase.  However, no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene.  This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo.	acyl-CoA oxidase 6;(source:Araport11)
AT1G06400.1	protein_coding	Ras-related small GTP-binding family protein	small GTP-binding protein (ara-2).RabGTPase functioning in anterograde trafficking from trans-Golgi network/early endosomal compartments to the plasma membrane as well as in responses to salinity stress.	Ras-related small GTP-binding family protein;(source:Araport11)
AT1G06320.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06410.1	protein_coding	trehalose-phosphatase/synthase 7	Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.	trehalose-phosphatase/synthase 7;(source:Araport11)
AT1G06340.1	protein_coding	Plant Tudor-like protein		Plant Tudor-like protein;(source:Araport11)
AT1G06420.1	protein_coding			DNA ligase-like protein;(source:Araport11)
AT1G06350.1	protein_coding	Fatty acid desaturase family protein		Fatty acid desaturase family protein;(source:Araport11)
AT1G68390.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G68410.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G68440.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G68430.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G68420.1	protein_coding	Class II aaRS and biotin synthetases superfamily protein		Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT1G68400.1	protein_coding	leucine-rich repeat transmembrane protein kinase family protein		leucine-rich repeat transmembrane protein kinase family protein;(source:Araport11)
AT1G47800.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G47870.1	protein_coding	winged-helix DNA-binding transcription factor family protein	Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway.  AtE2Fc is regulated by a balance between gene expression and ubiquitin-proteasome proteolysis.  AtE2Fc might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. E2Fc has been shown to interact with DPB in its nonphosphorylated form; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost. E2Fc is required for miR396 activity on cell proliferation under UV-B.  Its role is independent of E2Fe, probably modulating DNA damage responses through the regulation of SOG1 and ATR transcript levels.	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT1G47780.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G47860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.0e-40 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G47770.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT1G47840.1	protein_coding	hexokinase 3	Encodes a putative hexokinase.	hexokinase 3;(source:Araport11)
AT1G47830.1	protein_coding	SNARE-like superfamily protein		SNARE-like superfamily protein;(source:Araport11)
AT1G47760.1	protein_coding	AGAMOUS-like 102		AGAMOUS-like 102;(source:Araport11)
AT1G47790.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G47750.1	protein_coding	peroxin 11A	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.	peroxin 11A;(source:Araport11)
AT1G47810.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G47820.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G47740.1	protein_coding	PPPDE putative thiol peptidase family protein		PPPDE putative thiol peptidase family protein;(source:Araport11)
AT1G30150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 2.2e-24 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT1G30140.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT1G30130.1	protein_coding			DUF1365 family protein;(source:Araport11)
AT1G30120.1	protein_coding	pyruvate dehydrogenase E1 beta	Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit.	pyruvate dehydrogenase E1 beta;(source:Araport11)
AT1G30190.1	protein_coding			cotton fiber protein;(source:Araport11)
AT1G30110.1	protein_coding	nudix hydrolase homolog 25	Encodes a ppGpp pyrophosphohydrolase.	nudix hydrolase homolog 25;(source:Araport11)
AT1G30100.1	protein_coding	nine-cis-epoxycarotenoid dioxygenase 5	Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.	nine-cis-epoxycarotenoid dioxygenase 5;(source:Araport11)
AT1G30170.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT1G30160.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT1G47990.1	protein_coding	gibberellin 2-oxidase 4	Encodes a gibberellin 2-oxidase that acts on C19 gibberellins. AtGA2OX4 expression is responsive to cytokinin and KNOX activities.	gibberellin 2-oxidase 4;(source:Araport11)
AT1G47980.1	protein_coding			desiccation-like protein;(source:Araport11)
AT1G47970.1	protein_coding			nucleolin;(source:Araport11)
AT1G47960.1	protein_coding	cell wall / vacuolar inhibitor of fructosidase 1	Plant cell wall (CWI) and vacuolar invertases (VI)  play important roles in carbohydrate metabolism, stress responses  and sugar signaling. This protein may inhibit their activity.	cell wall / vacuolar inhibitor of fructosidase 1;(source:Araport11)
AT1G47950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.5e-238 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT1G48010.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G48000.1	protein_coding	myb domain protein 112	Encodes a putative transcription factor (MYB112).	myb domain protein 112;(source:Araport11)
AT1G60010.1	protein_coding			D-ribose-binding periplasmic protein;(source:Araport11)
AT1G60020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa);(source:TAIR10)
AT1G60030.1	protein_coding	nucleobase-ascorbate transporter 7		nucleobase-ascorbate transporter 7;(source:Araport11)
AT1G60080.1	protein_coding	3'-5'-exoribonuclease family protein		3-5-exoribonuclease family protein;(source:Araport11)
AT1G60090.1	protein_coding	beta glucosidase 4		beta glucosidase 4;(source:Araport11)
AT1G60040.1	protein_coding	AGAMOUS-like 49		AGAMOUS-like 49;(source:Araport11)
AT1G59980.1	protein_coding	ARG1-like 2		ARG1-like 2;(source:Araport11)
AT1G59990.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT1G60060.1	protein_coding	Serine/threonine-protein kinase WNK (With No Lysine)-related		Serine/threonine-protein kinase WNK (With No Lysine)-like protein;(source:Araport11)
AT1G60000.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G60050.1	protein_coding	Nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	Nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G60070.1	protein_coding	Adaptor protein complex AP-1, gamma subunit		Adaptor protein complex AP-1, gamma subunit;(source:Araport11)
AT1G26920.1	protein_coding			zinc finger CCHC domain protein;(source:Araport11)
AT1G26930.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G26880.1	protein_coding	Ribosomal protein L34e superfamily protein		Ribosomal protein L34e superfamily protein;(source:Araport11)
AT1G26940.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT1G26890.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G26950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT5G33360.1);(source:TAIR10)
AT1G26900.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G26960.1	protein_coding	homeobox protein 23	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Participates in the gene regulatory network controlling root branching.	homeobox protein 23;(source:Araport11)
AT1G26840.1	protein_coding	origin recognition complex protein 6	Origin Recognition Complex subunit 6. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. It acts downstream of BRP4, and is, at least in part, involved in the BRP4-mediated mitotic cell-cycle progression.	origin recognition complex protein 6;(source:Araport11)
AT1G26850.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G26910.1	protein_coding	Ribosomal protein L16p/L10e family protein		Ribosomal protein L16p/L10e family protein;(source:Araport11)
AT1G26860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01700.1);(source:TAIR10)
AT1G26870.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	NAC-domain protein. Expressed in root cap stem cells, where it promotes periclinal root cap-forming divisions. Involved in a regulatory feedback loop with SMB. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G59600.1	protein_coding	ZCW7		ZCW7;(source:Araport11)
AT1G59610.1	protein_coding	dynamin-like 3	A high molecular weight GTPase whose GTP-binding domain shows a low homology to those of other plant dynamin-like proteins.Contains a pleckstrin homologous domain. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis. The mRNA is cell-to-cell mobile.	dynamin-like 3;(source:Araport11)
AT1G59630.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G59640.1	protein_coding	BIG PETAL P	A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size.  BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS.	transcription factor BIG PETAL P (BPE);(source:Araport11)
AT1G59650.1	protein_coding	Protein of unknown function (DUF1336)	Encodes CW14.	CW14 protein (DUF1336);(source:Araport11)
AT1G59660.1	protein_coding	Nucleoporin autopeptidase	Encodes a protein with similarity to mammalian nucleoporin Nup98.Its expression is upregulated in mutants that are NUP deficient. Nucleoportin which redundantly inhibits flowering together with Nup98a through multiple pathways including clock, photoperiod, and age pathways. Gates flowering in a CONSTANS (CO)-independent mode and bypasses the CO checkpoint in photoperiodic signaling and integrated signals from multiple pathways to directly target FLOWERING LOCUS T (FT) for flowering control.	Nucleoporin autopeptidase;(source:Araport11)
AT1G59580.1	protein_coding	mitogen-activated protein kinase homolog 2	encodes a mitogen-activated kinase involved in innate immunity The mRNA is cell-to-cell mobile.	mitogen-activated protein kinase homolog 2;(source:Araport11)
AT1G59670.1	protein_coding	glutathione S-transferase TAU 15	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 15;(source:Araport11)
AT1G59590.1	protein_coding	ZCF37	ZCF37 mRNA, complete cds The mRNA is cell-to-cell mobile.	ZCF37;(source:Araport11)
AT1G59620.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family	Encodes CW9.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G59680.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G78600.1	protein_coding	light-regulated zinc finger protein 1		light-regulated zinc finger protein 1;(source:Araport11)
AT1G78560.1	protein_coding	Sodium Bile acid symporter family	Chloroplast inner membrane, pantothenate transporter.	Sodium Bile acid symporter family;(source:Araport11)
AT1G78510.1	protein_coding	solanesyl diphosphate synthase 1	Encodes one of the two paralogous solanesyl diphosphate synthases - SPS1 (At1g78510) and SPS2 (At1g17050) - that assemble the side-chain of plastoquinone-9 in plastids.	solanesyl diphosphate synthase 1;(source:Araport11)
AT1G78520.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G78500.1	protein_coding	Terpenoid cyclases family protein	Encodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, &#945;-amyrin and bauerenol, this enzyme was also shown to produce two <i>seco</i>-triterpenes: &#945;- and &#946;-<i>seco</i>-amyrin.	Terpenoid cyclases family protein;(source:Araport11)
AT1G78620.1	protein_coding	Protein of unknown function DUF92, transmembrane		integral membrane protein (Protein of unknown function DUF92, transmembrane);(source:Araport11)
AT1G78570.1	protein_coding	rhamnose biosynthesis 1	Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha.  The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in <i>E. coli</i>.	rhamnose biosynthesis 1;(source:Araport11)
AT1G78610.1	protein_coding	mechanosensitive channel of small conductance-like 6		mechanosensitive channel of small conductance-like 6;(source:Araport11)
AT1G78490.1	protein_coding	cytochrome P450, family 708, subfamily A, polypeptide 3	member of CYP708A family. The mRNA is cell-to-cell mobile.	cytochrome P450, family 708, subfamily A, polypeptide 3;(source:Araport11)
AT1G78590.1	protein_coding	NAD(H) kinase 3	Encodes a NADH kinase which can synthesize NADPH from NADH; also utilizes NAD+ as substrate although NADH is the preferred substrate.	NAD(H) kinase 3;(source:Araport11)
AT1G78550.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G78650.1	protein_coding	DNA-directed DNA polymerases	Similar to DNA polymerase delta (POLD3), which in other organism was shown to be involved in the elongation of DNA replication.	DNA-directed DNA polymerase;(source:Araport11)
AT1G78580.1	protein_coding	trehalose-6-phosphate synthase	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain but no trehalose phosphatase (TPP)-like domain.  ATTPS1 is able to complement yeast tps1 mutants in vivo. The gene product modulates cell growth but not cell differentiation by determining cell wall deposition and cell division.	trehalose-6-phosphate synthase;(source:Araport11)
AT1G78540.1	protein_coding	SH2 domain protein B	Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.	SH2 domain protein B;(source:Araport11)
AT1G78530.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G78640.1	protein_coding			B3 domain protein;(source:Araport11)
AT1G78630.1	protein_coding	Ribosomal protein L13 family protein		Ribosomal protein L13 family protein;(source:Araport11)
AT1G09320.1	protein_coding	agenet domain-containing protein	Heterochromatin-binding protein which can bind to three H3K9me2 tails. Preferentially binds to long TEs. Required for transcriptional silencing, non-CG DNA methylation, and H3K9 dimethylation at some loci.	agenet domain-containing protein;(source:Araport11)
AT1G09330.1	protein_coding			golgi apparatus membrane protein-like protein ECHIDNA protein;(source:Araport11)
AT1G09340.1	protein_coding	chloroplast RNA binding	Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein.  CRB is important for the proper functioning of the chloroplast.  Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes. The mRNA is cell-to-cell mobile.	chloroplast RNA binding protein;(source:Araport11)
AT1G09300.1	protein_coding	Metallopeptidase M24 family protein	Encodes a mitochondrial protease ICP55. Alters the stability of proteins by removal of a single amino acid from their sequence.	Metallopeptidase M24 family protein;(source:Araport11)
AT1G09310.1	protein_coding	Protein of unknown function, DUF538		plant/protein (Protein of unknown function, DUF538);(source:Araport11)
AT1G36970.1	protein_coding	Domain of unknown function (DUF1985)		transmembrane protein, putative (DUF1985);(source:Araport11)
AT1G37020.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT1G36950.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G37010.1	protein_coding			spindle pole body component;(source:Araport11)
AT1G37050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43320.1);(source:TAIR10)
AT1G37000.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT1G36990.1	protein_coding			C-jun-amino-terminal kinase-interacting protein;(source:Araport11)
AT1G36980.1	protein_coding			transmembrane 50A-like protein;(source:Araport11)
AT1G77780.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G77720.1	protein_coding	putative protein kinase 1	Encodes a predicted protein kinase based on sequence similarity.	putative protein kinase 1;(source:Araport11)
AT1G77730.1	protein_coding	Pleckstrin homology (PH) domain superfamily protein		Pleckstrin homology (PH) domain superfamily protein;(source:Araport11)
AT1G77790.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G77740.1	protein_coding	phosphatidylinositol-4-phosphate 5-kinase 2	Encodes PIP5K2, a phosphatidylinositol-4-phosphate 5-kinase (PtdIns(4)P 5-kinase 2; or PIP5K2 that is involved in regulating lateral root formation and root gravity response. The mRNA is cell-to-cell mobile.	phosphatidylinositol-4-phosphate 5-kinase 2;(source:Araport11)
AT1G77750.1	protein_coding	Ribosomal protein S13/S18 family		Ribosomal protein S13/S18 family;(source:Araport11)
AT1G77760.1	protein_coding	nitrate reductase 1	Encodes the cytosolic minor isoform of nitrate reductase (NR). Involved in the first step of nitrate assimilation, it contributes about 15% of the nitrate reductase activity in shoots. Similar to molybdopterin oxidoreductases at the N-terminus, and to FAD/NAD-binding cytochrome reductases at the C-terminus. Cofactors: FAD, heme iron (cytochrome B-557), and molybdenum-pterin.	nitrate reductase 1;(source:Araport11)
AT1G77690.1	protein_coding	like AUX1 3	Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence.  Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia.	like AUX1 3;(source:Araport11)
AT1G77700.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT1G77770.1	protein_coding	Protein of unknown function (DUF1644)		forkhead box protein, putative (DUF1644);(source:Araport11)
AT1G77710.1	protein_coding			ubiquitin-fold modifier;(source:Araport11)
AT1G35180.1	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G35110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28970.1);(source:TAIR10)
AT1G35170.1	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G35100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36035.1);(source:TAIR10)
AT1G35160.1	protein_coding	GF14 protein phi chain	GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 The mRNA is cell-to-cell mobile.	GF14 protein phi chain;(source:Araport11)
AT1G35150.1	protein_coding	General transcription factor 2-related zinc finger protein		General transcription factor 2-related zinc finger protein;(source:Araport11)
AT1G35220.1	protein_coding			FAM91 carboxy-terminus protein;(source:Araport11)
AT1G35210.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G35140.1	protein_coding	Phosphate-responsive 1 family protein	EXL1 is involved in the C-starvation response. Phenotypic changes of an exl1 loss of function mutant became evident only under corresponding experimental conditions. For example, the mutant showed diminished biomass production in a short-day/low light growth regime, impaired survival during extended night, and impaired survival of anoxia stress.	Phosphate-responsive 1 family protein;(source:Araport11)
AT1G35200.1	pseudogene			pseudogene of Ribosomal protein L4/L1 family;(source:Araport11)
AT1G35190.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G53430.1	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G53460.1	protein_coding			craniofacial development protein;(source:Araport11)
AT1G53450.1	protein_coding			epstein-barr nuclear antigen;(source:Araport11)
AT1G53440.1	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G47360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-307 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G47350.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G47340.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G47400.1	protein_coding		Involved in regulation of iron deficiency response genes. Overexpression results in hyperaccumulation of Fe and Mn.	hypothetical protein;(source:Araport11)
AT1G47330.1	protein_coding	CBS domain-containing protein with a domain of unknown function (DUF21)		methyltransferase, putative (DUF21);(source:Araport11)
AT1G47310.1	protein_coding			signal peptidase I;(source:Araport11)
AT1G47390.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G47300.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G47380.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G47290.1	protein_coding	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1	Encodes an enzyme with 3&#946;-hydroxysteroid dehydrogenase/C4-decarboxylase activity <i>in vitro</i>. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the <i>Arabidopsis</i> gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound.	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1;(source:Araport11)
AT1G47370.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein	RBA1 variant in Ag0 background is a TIR-only receptor protein that binds to the  bacterial type III effector protein HopBA. The Col-0 variant, which is not expressed,  is likely a psuedogene and more highly methylated than the Ag0 variant which is expressed.	Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT1G47280.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G47320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT2G27870.1);(source:TAIR10)
AT1G33910.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G33900.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G33890.1	protein_coding	Avirulence induced gene (AIG1) family protein		Avirulence induced gene (AIG1) family protein;(source:Araport11)
AT1G33880.1	protein_coding	Avirulence induced gene (AIG1) family protein		Avirulence induced gene (AIG1) family protein;(source:Araport11)
AT1G33940.1	protein_coding			Serine/Threonine-kinase ULK4-like protein;(source:Araport11)
AT1G33870.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G33930.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G33920.1	protein_coding	phloem protein 2-A4		phloem protein 2-A4;(source:Araport11)
AT1G29750.1	protein_coding	receptor-like kinase in flowers 1	Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains.	receptor-like kinase in flowers 1;(source:Araport11)
AT1G62610.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G62620.1	protein_coding	Flavin-binding monooxygenase family protein		Flavin-binding monooxygenase family protein;(source:Araport11)
AT1G62540.1	protein_coding	flavin-monooxygenase glucosinolate S-oxygenase 2	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates The mRNA is cell-to-cell mobile.	flavin-monooxygenase glucosinolate S-oxygenase 2;(source:Araport11)
AT1G62500.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G62630.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G62510.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Expressed in the root cortex.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G62560.1	protein_coding	flavin-monooxygenase glucosinolate S-oxygenase 3	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates The mRNA is cell-to-cell mobile.	flavin-monooxygenase glucosinolate S-oxygenase 3;(source:Araport11)
AT1G62520.1	protein_coding			sulfated surface-like glycoprotein;(source:Araport11)
AT1G62570.1	protein_coding	flavin-monooxygenase glucosinolate S-oxygenase 4	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates The mRNA is cell-to-cell mobile.	flavin-monooxygenase glucosinolate S-oxygenase 4;(source:Araport11)
AT1G62530.1	protein_coding	Plant protein of unknown function (DUF863)		hypothetical protein (DUF863);(source:Araport11)
AT1G62580.1	protein_coding	Flavin-binding monooxygenase family protein	Encodes a flavin monooxygenase that binds NO, has a higher affinity for NO than for O(2) and can generate cGMP from GTP in vitro in an NO-dependent manner.	flavin containing monooxygenase FMO GS-OX-like protein;(source:Araport11)
AT1G62590.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein	Encodes a functional adenylate cyclase.	pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G62600.1	protein_coding	Flavin-binding monooxygenase family protein		Flavin-binding monooxygenase family protein;(source:Araport11)
AT1G62480.1	protein_coding	Vacuolar calcium-binding protein-related		Vacuolar calcium-binding protein-like protein;(source:Araport11)
AT1G62490.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G41810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34590.1);(source:TAIR10)
AT1G41820.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G30320.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT1G30400.1	protein_coding	multidrug resistance-associated protein 1	glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. An ABCC-type arsenite-phytochelatin transporter. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.	multidrug resistance-associated protein 1;(source:Araport11)
AT1G30380.1	protein_coding	photosystem I subunit K	Encodes subunit K of photosystem I reaction center. The mRNA is cell-to-cell mobile.	photosystem I subunit K;(source:Araport11)
AT1G30390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.9e-17 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT1G30370.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a mitochondria-localized class III phospholipase A1 that plays a role in seed viability.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G30410.1	protein_coding	multidrug resistance-associated protein 13	member of MRP subfamily	multidrug resistance-associated protein 13;(source:Araport11)
AT1G30360.1	protein_coding	Early-responsive to dehydration stress protein (ERD4)		Early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT1G30350.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G30330.1	protein_coding	auxin response factor 6	Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.	auxin response factor 6;(source:Araport11)
AT1G75900.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G75920.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates. The mRNA is cell-to-cell mobile.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G75810.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G76040.1	protein_coding	calcium-dependent protein kinase 29	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 29;(source:Araport11)
AT1G75940.1	protein_coding	Glycosyl hydrolase superfamily protein	encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G75820.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT1G76050.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT1G75960.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G75830.1	protein_coding	low-molecular-weight cysteine-rich 67	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	low-molecular-weight cysteine-rich 67;(source:Araport11)
AT1G76060.1	protein_coding	LYR family of Fe/S cluster biogenesis protein	mutant has Embryo defect	LYR family of Fe/S cluster biogenesis protein;(source:Araport11)
AT1G75980.1	protein_coding	Single hybrid motif superfamily protein		Single hybrid motif superfamily protein;(source:Araport11)
AT1G75840.1	protein_coding	RAC-like GTP binding protein 5	Belongs to the plant-specific ROP group of Rho GTPases; localized to the plasma membrane of tips of root hairs; involved in polar growth control. The mRNA is cell-to-cell mobile.	RAC-like GTP binding protein 5;(source:Araport11)
AT1G75990.1	protein_coding	PAM domain (PCI/PINT associated module) protein		PAM domain (PCI/PINT associated module) protein;(source:Araport11)
AT1G75850.1	protein_coding	VPS35 homolog B		VPS35 homolog B;(source:Araport11)
AT1G75890.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G76010.1	protein_coding	Alba DNA/RNA-binding protein		Alba DNA/RNA-binding protein;(source:Araport11)
AT1G75870.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G75910.1	protein_coding	extracellular lipase 4	member of Lipase proteins	extracellular lipase 4;(source:Araport11)
AT1G76020.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT1G75880.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT1G75930.1	protein_coding	extracellular lipase 6	member of Lipase proteins	extracellular lipase 6;(source:Araport11)
AT1G76030.1	protein_coding	ATPase, V1 complex, subunit B protein	One of three genes encoding the vacuolar ATP synthase subunit B1. This subunit was shown to interact with the gene product of hexokinase1 (ATHXK1). This interaction, however, is solely restricted to the nucleus.  The protein binds to and co-localizes with F-actin, bundles F-actin to form higher-order structure, and stabilizes actin filaments in vitro. The mRNA is cell-to-cell mobile.	ATPase, V1 complex, subunit B protein;(source:Araport11)
AT1G75950.1	protein_coding	S phase kinase-associated protein 1	SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which  provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene  to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif. The mRNA is cell-to-cell mobile.	S phase kinase-associated protein 1;(source:Araport11)
AT1G75860.1	protein_coding			DNA ligase;(source:Araport11)
AT1G66900.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G66890.1	protein_coding			50S ribosomal-like protein;(source:Araport11)
AT1G66880.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G66920.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G66910.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G14570.1	protein_coding	UBX domain-containing protein	Encodes a nuclear UBX-containing protein that can bridge ubiquitin to AtCDC48A.	UBX domain-containing protein;(source:Araport11)
AT1G14580.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT1G14590.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein		Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G14560.1	protein_coding	Mitochondrial substrate carrier family protein	Encodes a mitochondrial CoA transporter.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G14600.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT1G14640.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT1G14650.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein		SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein;(source:Araport11)
AT1G14620.1	protein_coding	decoy		decoy;(source:Araport11)
AT1G14630.1	protein_coding			XRI1-like protein;(source:Araport11)
AT1G14610.1	protein_coding	valyl-tRNA synthetase / valine--tRNA ligase (VALRS)	Required for proper proliferation of basal cells.	valyl-tRNA synthetase / valine-tRNA ligase (VALRS);(source:Araport11)
AT1G30650.1	protein_coding	WRKY DNA-binding protein 14	member of WRKY Transcription Factor; Group II-e	WRKY DNA-binding protein 14;(source:Araport11)
AT1G30740.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT1G30660.1	protein_coding	nucleic acid binding;nucleic acid binding	A truncated version of Twinkle that retains only the DNA primase domain.	nucleic acid binding protein;(source:Araport11)
AT1G30570.1	protein_coding	hercules receptor kinase 2	Encodes HERCULES2 (HERK2), a receptor kinase regulated by Brassinosteroids and required for cell elongation during vegetative growth.	hercules receptor kinase 2;(source:Araport11)
AT1G30670.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G30640.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT1G30750.1	protein_coding			TPRXL;(source:Araport11)
AT1G30690.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G30580.1	protein_coding	GTP binding		GTP binding protein;(source:Araport11)
AT1G30700.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT1G30590.1	protein_coding	RNA polymerase I specific transcription initiation factor RRN3 protein		RNA polymerase I specific transcription initiation factor RRN3 protein;(source:Araport11)
AT1G30710.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT1G30600.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT1G30720.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT1G30610.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein	Pentatricopeptide repeat protein .Mutations in this locus result in embryo lethality due to defects in chloroplast development. Embryo shape at seed maturity is globular.	pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G30730.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT1G30620.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G30630.1	protein_coding	Coatomer epsilon subunit		Coatomer epsilon subunit;(source:Araport11)
AT1G77670.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT1G77600.1	protein_coding	ARM repeat superfamily protein	One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	ARM repeat superfamily protein;(source:Araport11)
AT1G77510.1	protein_coding	PDI-like 1-2	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.  This protein has been shown to be an attenuator of D1 synthesis, modulating photoinhibition in a light-regulated manner.	PDI-like 1-2;(source:Araport11)
AT1G77440.1	protein_coding	20S proteasome beta subunit C2	Encodes beta subunit of 20s proteosome complex which is involved in protein degradation.	20S proteasome beta subunit C2;(source:Araport11)
AT1G77520.1	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT1G77450.1	protein_coding	NAC domain containing protein 32		NAC domain containing protein 32;(source:Araport11)
AT1G77610.1	protein_coding	EamA-like transporter family protein		EamA-like transporter family protein;(source:Araport11)
AT1G77530.1	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT1G77460.1	protein_coding	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein	Encodes a plasma membrane, microtubule associated protein with sequence similarity to CSI1 that is involved in cellulose biosynthesis and cell elongation. A mutation in CSI3 alone do not appear to affect growth but enhances the cell elongation phenotype of CSI1 mutants. CSI3 co localizes with CSI1 and CESA3 and CESA6.	CELLULOSE SYNTHASE INTERACTIVE 3;(source:Araport11)
AT1G77620.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G77470.1	protein_coding	replication factor C subunit 3	Encodes a protein with high homology to the Replication Factor C, Subunit 3 (RFC3) of yeast and other eukaryotes. rfc3 mutants are hypersensitive to salicylic acid and exhibit enhanced induction of PR genes and resistance against virulent oomycete Hyaloperonospora arabidopsidis Noco2. The enhanced pathogen resistance in the mutant is NPR1-independent.	replication factor C subunit 3;(source:Araport11)
AT1G77540.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Encodes a H3/H4 histone acetyltransferase. Belongs to the GNAT family, whose many members are involved in histone acetylation and chromatin remodeling, and are important for the regulation of cell growth and development.	Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G77630.1	protein_coding	Peptidoglycan-binding LysM domain-containing protein	Encodes a lysin-motif protein mediating bacterial peptidoglycan sensing and immunity to bacterial infection. Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant. It contains a C-terminal GPI anchor signal and is an ortholog of OsLYP4 and OsLYP6.	Peptidoglycan-binding LysM domain-containing protein;(source:Araport11)
AT1G77480.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G77640.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G77490.1	protein_coding	thylakoidal ascorbate peroxidase	Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	thylakoidal ascorbate peroxidase;(source:Araport11)
AT1G77500.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		DUF630 family protein, putative (DUF630 and DUF632);(source:Araport11)
AT1G77550.1	protein_coding	tubulin-tyrosine ligases;tubulin-tyrosine ligases		tubulin-tyrosine ligase;(source:Araport11)
AT1G77570.1	protein_coding	Winged helix-turn-helix transcription repressor DNA-binding		Winged helix-turn-helix transcription repressor DNA-binding protein;(source:Araport11)
AT1G77580.1	protein_coding	Plant protein of unknown function (DUF869)		filament-like protein (DUF869);(source:Araport11)
AT1G77650.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G77590.1	protein_coding	long chain acyl-CoA synthetase 9	Encodes major plastidic long chain acyl-CoA synthetase with a slight substrate preference of oleic acid over any of the other fatty acids.	long chain acyl-CoA synthetase 9;(source:Araport11)
AT1G77660.1	protein_coding	Histone H3 K4-specific methyltransferase SET7/9 family protein		Histone H3 K4-specific methyltransferase SET7/9 family protein;(source:Araport11)
AT1G02370.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G02390.1	protein_coding	glycerol-3-phosphate acyltransferase 2	putative sn-glycerol-3-phosphate 2-O-acyltransferase	glycerol-3-phosphate acyltransferase 2;(source:Araport11)
AT1G02400.1	protein_coding	gibberellin 2-oxidase 6	Encodes a gibberellin 2-oxidase that acts on C19 gibberellins but not C20 gibberellins.	gibberellin 2-oxidase 6;(source:Araport11)
AT1G02410.1	protein_coding	cytochrome c oxidase assembly protein CtaG / Cox11 family	Encodes a member of the cytochrome c oxidase 11 protein family.  It is an integral mitochondrial protein and likely plays an important role as a mitochondrial chaperone in COX complex assembly, affecting plant growth and pollen germination.	cytochrome c oxidase assembly protein CtaG / Cox11 family;(source:Araport11)
AT1G02430.1	protein_coding	ADP-ribosylation factor D1B	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.	ADP-ribosylation factor D1B;(source:Araport11)
AT1G02300.1	protein_coding	Cysteine proteinases superfamily protein	Encodes a capase involved in stress induced cell death.	Cysteine proteinases superfamily protein;(source:Araport11)
AT1G02310.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G02330.1	protein_coding		Encodes a nuclear coiled-coil domain-containing protein that interacts with and negatively regulates COP1's E3 ubiquitin ligase activity, and represses COP1 mediated HY5 degradation in cell-free extracts.	integrator complex subunit-like protein;(source:Araport11)
AT1G02320.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G02340.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G02380.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G02350.1	protein_coding	protoporphyrinogen oxidase-related		protoporphyrinogen oxidase-like protein;(source:Araport11)
AT1G02420.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G02360.1	protein_coding	Chitinase family protein		Chitinase family protein;(source:Araport11)
AT1G47900.1	protein_coding	Plant protein of unknown function (DUF869)		filament-like protein (DUF869);(source:Araport11)
AT1G47910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.3e-42 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G47920.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT1G47890.1	protein_coding	receptor like protein 7		receptor like protein 7;(source:Araport11)
AT1G69770.1	protein_coding	chromomethylase 3	Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites.  Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones.  Involved in gene silencing.	chromomethylase 3;(source:Araport11)
AT1G69670.1	protein_coding	cullin 3B	cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.	cullin 3B;(source:Araport11)
AT1G69760.1	protein_coding			suppressor SRP40-like protein;(source:Araport11)
AT1G69750.1	protein_coding	cytochrome c oxidase 19-2		cytochrome c oxidase 19-2;(source:Araport11)
AT1G69740.1	protein_coding	Aldolase superfamily protein	Encodes a putative 5-aminolevulinate dehydratase involved in chlorophyll biosynthesis.	Aldolase superfamily protein;(source:Araport11)
AT1G69730.1	protein_coding	Wall-associated kinase family protein		Wall-associated kinase family protein;(source:Araport11)
AT1G69720.1	protein_coding	heme oxygenase 3	Encodes a member (HO3) of the heme oxygenase family.	heme oxygenase 3;(source:Araport11)
AT1G69790.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G69700.1	protein_coding	HVA22 homologue C	Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible. The mRNA is cell-to-cell mobile.	HVA22 homologue C;(source:Araport11)
AT1G69710.1	protein_coding	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain		Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT1G69690.1	protein_coding	TCP family transcription factor 	AtTCP15 is involved in the regulation of endoreduplication.	TCP family transcription factor;(source:Araport11)
AT1G69680.1	protein_coding	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein		ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein);(source:Araport11)
AT1G69780.1	protein_coding	Homeobox-leucine zipper protein family	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein which is expressed during the seed-to-seedling transition, regulates some of the network nodes, and affects late seedling establishment. Knock-out mutants for athb13 showed increased primary root length as compared with wild type (Col-0) seedlings, suggesting that this transcription factor is a negative regulator of early root growth, possibly repressing cell division and/or cell elongation or the length of time cells elongate.	Homeobox-leucine zipper protein family;(source:Araport11)
AT1G07910.1	protein_coding	RNAligase	Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains,  an N-terminal ligase component and a C-terminal 5'-kinase/2',3'-cyclic phosphodiesterase  (CPD) component that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo.	RNAligase;(source:Araport11)
AT1G08000.1	protein_coding	GATA transcription factor 10	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 10;(source:Araport11)
AT1G07920.1	protein_coding	GTP binding Elongation factor Tu family protein		GTP binding Elongation factor Tu family protein;(source:Araport11)
AT1G08010.1	protein_coding	GATA transcription factor 11	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 11;(source:Araport11)
AT1G07930.1	protein_coding	GTP binding Elongation factor Tu family protein		GTP binding Elongation factor Tu family protein;(source:Araport11)
AT1G08110.1	protein_coding	lactoylglutathione lyase family protein / glyoxalase I family protein	Encodes a Zn2+ dependent glyoxylase.	lactoylglutathione lyase family protein / glyoxalase I family protein;(source:Araport11)
AT1G07940.1	protein_coding	GTP binding Elongation factor Tu family protein		GTP binding Elongation factor Tu family protein;(source:Araport11)
AT1G08120.1	protein_coding			TP53-regulating kinase-like protein;(source:Araport11)
AT1G07950.1	protein_coding	Surfeit locus protein 5 subunit 22 of Mediator complex		Surfeit locus protein 5 subunit 22 of Mediator complex;(source:Araport11)
AT1G08030.1	protein_coding	tyrosylprotein sulfotransferase	Encodes a tyrosylprotein sulfotransferase (TPST). This protein is a 500-aa type I transmembrane protein that shows no sequence similarity to animal TPSTs. Activity confirmed by protein expression in yeast.  TPST is expressed throughout the plant body, and the highest levels of expression are in the root apical meristem. TPST acts in the auxin pathway to maintain postembryonic root stem cell niche by defining the expression of the PLETHORA stem cell transcription factor genes. A loss-of-function mutant TPST displayed a marked dwarf phenotype accompanied by stunted roots, pale green leaves, reduction in higher order veins, early senescence, and a reduced number of flowers and siliques. TPST  suppresses ethylene production through the action of PSK (phytosulfokine).	tyrosylprotein sulfotransferase;(source:Araport11)
AT1G08040.1	protein_coding	Protein of unknown function (DUF707)		trimethylguanosine synthase (DUF707);(source:Araport11)
AT1G07960.1	protein_coding	PDI-like 5-1	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.	PDI-like 5-1;(source:Araport11)
AT1G07970.1	protein_coding			cytochrome B561, amino-terminal protein;(source:Araport11)
AT1G08050.1	protein_coding	Zinc finger (C3HC4-type RING finger) family protein		Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G07980.1	protein_coding	nuclear factor Y, subunit C10		nuclear factor Y, subunit C10;(source:Araport11)
AT1G08080.1	protein_coding	alpha carbonic anhydrase 7		alpha carbonic anhydrase 7;(source:Araport11)
AT1G07990.1	protein_coding	SIT4 phosphatase-associated family protein		SIT4 phosphatase-associated family protein;(source:Araport11)
AT1G08090.1	protein_coding	nitrate transporter 2:1	High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake.	nitrate transporter 2:1;(source:Araport11)
AT1G08100.1	protein_coding	nitrate transporter 2.2	Encodes a high-affinity nitrate transporter.	nitrate transporter 2.2;(source:Araport11)
AT1G08070.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a chloroplast RNA editing factor.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G08060.1	protein_coding	ATP-dependent helicase family protein	Encodes a transcriptional silencer that is required for proper expression of PRR/NLR immune receptor genes.	ATP-dependent helicase family protein;(source:Araport11)
AT1G56190.1	protein_coding	Phosphoglycerate kinase family protein	One of a pair of plastid localized phosphoglycerate kinases involved in galactolipid biosynthesis. Functions redundantly with AT3g12780 (PGK1) in the chloroplast in the biosynthesis of thylakoid membrane galactolipids. Double mutants are photosynthetically incompetent, plants are albino and seedling lethal.	Phosphoglycerate kinase family protein;(source:Araport11)
AT1G56100.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G56090.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G56080.1	protein_coding		NAI1 interacting protein, involved in ER body formation.	interactor of constitutive active ROPs protein;(source:Araport11)
AT1G56060.1	protein_coding		CYSTM3  is a mitochondrial protein that is induced by salt stress and is  a negative regulator of salt stress.	cysteine-rich/transmembrane domain protein B;(source:Araport11)
AT1G56130.1	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G56050.1	protein_coding	GTP-binding protein-related		GTP-binding protein-like protein;(source:Araport11)
AT1G56120.1	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G56040.1	protein_coding	HEAT/U-box domain-containing protein		HEAT/U-box protein;(source:Araport11)
AT1G56110.1	protein_coding	homolog of nucleolar protein NOP56	NOP56-like protein	NOP56-like pre RNA processing ribonucleoprotein;(source:Araport11)
AT1G66220.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT1G66230.1	protein_coding	myb domain protein 20	Encodes a putative transcription factor (MYB20).	myb domain protein 20;(source:Araport11)
AT1G66240.1	protein_coding	homolog of anti-oxidant 1		homolog of anti-oxidant 1;(source:Araport11)
AT1G66260.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G66250.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT1G66210.1	protein_coding	Subtilisin-like serine endopeptidase family protein		Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT1G13250.1	protein_coding	galacturonosyltransferase-like 3	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase-like 3;(source:Araport11)
AT1G13260.1	protein_coding	related to ABI3/VP1 1	Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator. The mRNA is cell-to-cell mobile.	related to ABI3/VP1 1;(source:Araport11)
AT1G13360.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G13270.1	protein_coding	methionine aminopeptidase 1B	Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C.	methionine aminopeptidase 1B;(source:Araport11)
AT1G13290.1	protein_coding	C2H2-like zinc finger protein	Encodes a putative zinc finger protein (C2H2 family, type IIIA, subclass A1d) that has a WIP domain. Seedlings with mutations in DOT5 have a misaligned venation defect in their leaves and cotyledons. Additional developmental abnormalities, such as elongated petioles and aberrant phyllotaxy suggest that DOT5 is required for normal shoot and root development.	C2H2-like zinc finger protein;(source:Araport11)
AT1G13300.1	protein_coding	myb-like transcription factor family protein	Encodes a nuclear localized member of the GARP family of transcription factors. Involved in nitrate/phosphate signaling in roots. It is transcriptionally regulated by nitrate and post transcriptionally by phospate and functions to integrate these two nutrient signaling pathways in the root.	myb-like transcription factor family protein;(source:Araport11)
AT1G13310.1	protein_coding	Endosomal targeting BRO1-like domain-containing protein		Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT1G13280.1	protein_coding	allene oxide cyclase 4	Encodes allene oxide cyclase.  One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence, a process that involves jasmonic acid signalling pathway.	allene oxide cyclase 4;(source:Araport11)
AT1G13320.1	protein_coding	protein phosphatase 2A  subunit A3	one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)	protein phosphatase 2A subunit A3;(source:Araport11)
AT1G13330.1	protein_coding	Arabidopsis Hop2 homolog	Encodes the Arabidopsis Hop2 homologue. In other species, Hop2 is proposed to be involved in inter-homolog bias in double strand break repair.	Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP);(source:Araport11)
AT1G69020.1	protein_coding	Prolyl oligopeptidase family protein		Prolyl oligopeptidase family protein;(source:Araport11)
AT1G68920.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G68930.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G68940.1	protein_coding	Armadillo/beta-catenin-like repeat family protein		Armadillo/beta-catenin-like repeat family protein;(source:Araport11)
AT1G68960.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT1G68980.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G68990.1	protein_coding	male gametophyte defective 3	MGP3 (male gametophyte-defective 3) belongs to a small family of nuclear-encoded Phage type RNA polymerases (RPOTs) involved in the transcription of mitochondrial genes in Arabidopsis thaliana. Mutation in MGP 3 significantly retarded pollen tube growth and caused defective embryo development.	male gametophyte defective 3;(source:Araport11)
AT1G68890.1	protein_coding	magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases	Homologous to the four eubacterial men genes involved in menanoquinone biosynthesis. Studies of mutants defective in this gene demonstrated its involvement in phylloquinone biosynthesis in Arabidopsis. The mRNA is cell-to-cell mobile.	2-oxoglutarate decarboxylase/hydro-lyase/magnesium ion-binding protein;(source:Araport11)
AT1G69010.1	protein_coding	BES1-interacting Myc-like protein 2	Encodes BES1-INTERACTING MYC-LIKE 2 (BIM2), a PAR1 (PHYTOCHROME RAPIDLY REGULATED 1)-interacting protein that positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	BES1-interacting Myc-like protein 2;(source:Araport11)
AT1G68910.1	protein_coding	WPP domain-interacting protein 2	Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390, WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells.  Ran GTPase plays essential roles in multiple cellular processes, including nucleocytoplasmic transport, spindle formation, and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs).  WIT1 and WIT2 have been identified as a second family of CC-TMD proteins, structurally similar, yet clearly distinct from the WIP family, that is required for RanGAP nuclear envelop association in root tip cells.	WPP domain-interacting protein 2;(source:Araport11)
AT1G05000.1	protein_coding	Phosphotyrosine protein phosphatases superfamily protein	Encodes an atypical dual-speci&#64257;city phosphatase.	Phosphotyrosine protein phosphatases superfamily protein;(source:Araport11)
AT1G05040.1	protein_coding			UBA-like domain protein;(source:Araport11)
AT1G05100.1	protein_coding	mitogen-activated protein kinase kinase kinase 18	member of MEKK subfamily	mitogen-activated protein kinase kinase kinase 18;(source:Araport11)
AT1G05090.1	protein_coding	dentin sialophosphoprotein-related		dentin sialophosphoprotein-like protein;(source:Araport11)
AT1G05080.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G05070.1	protein_coding	Protein of unknown function (DUF1068)		transmembrane protein, putative (DUF1068);(source:Araport11)
AT1G05030.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G05060.1	protein_coding			coiled-coil protein;(source:Araport11)
AT1G05020.1	protein_coding	ENTH/ANTH/VHS superfamily protein		ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT1G05010.1	protein_coding	ethylene-forming enzyme	Encodes 1-aminocyclopropane-1-carboxylate oxidase	ethylene-forming enzyme;(source:Araport11)
AT1G02070.1	protein_coding			zinc ion-binding protein;(source:Araport11)
AT1G02040.1	protein_coding	C2H2-type zinc finger family protein		C2H2-type zinc finger family protein;(source:Araport11)
AT1G02050.1	protein_coding	Chalcone and stilbene synthase family protein		Chalcone and stilbene synthase family protein;(source:Araport11)
AT1G02090.1	protein_coding	Proteasome component (PCI) domain protein	encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.	Proteasome component (PCI) domain protein;(source:Araport11)
AT1G02110.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		bZIP domain class transcription factor (DUF630 and DUF632);(source:Araport11)
AT1G02130.1	protein_coding	RAS 5	Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.	RAS 5;(source:Araport11)
AT1G02060.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G02080.1	protein_coding	transcription regulators	Acts as scaffold protein in the CCR4-NOT complex, by interacting with various NOT proteins and CAF1.	transcription regulator;(source:Araport11)
AT1G02100.1	protein_coding	Leucine carboxyl methyltransferase		Leucine carboxyl methyltransferase;(source:Araport11)
AT1G02120.1	protein_coding	GRAM domain family protein	Encodes VAD1 (Vascular Associated Death1), a regulator of cell death and defense responses in vascular tissues.  VAD1 is a putative membrane associated protein and contains a GRAM domain.  vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system. The mRNA is cell-to-cell mobile.	GRAM domain family protein;(source:Araport11)
AT1G02140.1	protein_coding	mago nashi family protein	Encodes a homologue of the exon junction complex (EJC) component MAGO that participates in intron-mediated enhancement of gene expression.	mago nashi family protein;(source:Araport11)
AT1G02020.1	protein_coding	nitroreductase family protein		nitroreductase family protein;(source:Araport11)
AT1G02030.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT1G55070.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G55080.1	protein_coding			mediator of RNA polymerase II transcription subunit-like protein;(source:Araport11)
AT1G55090.1	protein_coding	carbon-nitrogen hydrolase family protein		carbon-nitrogen hydrolase family protein;(source:Araport11)
AT1G55110.1	protein_coding	indeterminate(ID)-domain 7		indeterminate(ID)-domain 7;(source:Araport11)
AT1G55120.1	protein_coding	beta-fructofuranosidase 5	Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.	beta-fructofuranosidase 5;(source:Araport11)
AT1G55130.1	protein_coding	Endomembrane protein 70 protein family	Encodes an Arabidopsis Transmembrane nine (TMN) protein.  Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.	Endomembrane protein 70 protein family;(source:Araport11)
AT1G55140.1	protein_coding	Ribonuclease III family protein	Encodes one of two chloroplast Mini-RNase III-like enzymes in Arabidopsis.  Double mutants display imprecise maturation of 23S rRNA and other rRNAs.	Ribonuclease III family protein;(source:Araport11)
AT1G27080.1	protein_coding	nitrate transporter 1.6	Encodes a protein with low-affinity nitrate transporter activity that is expressed in the vascular tissue of the funiculus and the silique. This plasma membrane-localized enzyme is predicted to have 12 transmembrane domains. Plants lacking NRT1.6 have reduced levels of nitrate in their seeds and have increased levels of early embryonic developmental defects and seed abortion.	nitrate transporter 1.6;(source:Araport11)
AT1G26990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.0e-294 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G27090.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT1G27210.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G27100.1	protein_coding	Actin cross-linking protein		Actin cross-linking protein;(source:Araport11)
AT1G27020.1	protein_coding			plant/protein;(source:Araport11)
AT1G27030.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G27110.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G27040.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G27120.1	protein_coding	Galactosyltransferase family protein	Encodes a Golgi-localized hydroxyproline-O-galactosyltransferase.	Galactosyltransferase family protein;(source:Araport11)
AT1G27050.1	protein_coding		Encodes a protein with a RNA recognition motif.  Previously annotated as ATHB54, a homeodomain leucine zipper (HD-Zip) family protein.  In the TAIR10 genome release (2010), this locus was split into two loci: AT1G27045 (containing homeodomain and leucine zipper domains) and AT1G27050 (containing a RNA recognition motif). AT1G27045 is now named ATHB54. Note that Affymetrix ATH1 Probe Set linked to symbol ATHB54 is in fact directed against the product of the AT1G27050 locus (the mRNA coding for the RNA-recognition-motif protein).	homeobox leucine zipper protein;(source:Araport11)
AT1G27130.1	protein_coding	glutathione S-transferase tau 13	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). GSTU13 acts in the pathogen triggered pathway for indole glucosinolate metabolisms that involves also PENETRATION2 myrosinase. It is likely the enzyme that conjugates GSH with unstable indol-3-ylmethyl-ITCs formed upon PEN2-mediated IG hydrolysis, particularly in the branch of this pathway in which 4-substituted IGs are processed.	glutathione S-transferase tau 13;(source:Araport11)
AT1G27160.1	protein_coding	valyl-tRNA synthetase / valine--tRNA ligase-related		valyl-tRNA synthetase / valine-tRNA ligase-like protein;(source:Araport11)
AT1G27060.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT1G27140.1	protein_coding	glutathione S-transferase tau 14	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase tau 14;(source:Araport11)
AT1G27180.1	protein_coding	disease resistance protein (TIR-NBS-LRR class), putative		disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G27150.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G27070.1	protein_coding	5'-AMP-activated protein kinase-related	Encodes a chloroplast-localized CBM48-containing protein that is involved in starch granule initiation. PTST2 delivers suitable oligosaccharide substrates to starch synthase 4 (SS4). Mutants lacking PTST2 have fewer starch granules in leaf chloroplasts than the wild type. PTST2 is the Arabidopsis ortholog of the rice FLO6 protein.	5-AMP-activated protein kinase-like protein;(source:Araport11)
AT1G27170.1	protein_coding	transmembrane receptors;ATP binding		transmembrane receptors / ATP binding protein;(source:Araport11)
AT1G27200.1	protein_coding	Domain of unknown function (DUF23)		glycosyltransferase family protein (DUF23);(source:Araport11)
AT1G27190.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G44170.1	protein_coding	aldehyde dehydrogenase 3H1	Encodes an aldehyde dehydrogenase induced by ABA and dehydration that can oxidize saturated aliphatic aldehydes. It is also able to oxidize beta-unsaturated aldehydes, but not aromatic aldehydes. Activity of ALDH3H1 is NAD +-dependent.	aldehyde dehydrogenase 3H1;(source:Araport11)
AT1G44160.1	protein_coding	HSP40/DnaJ peptide-binding protein		HSP40/DnaJ peptide-binding protein;(source:Araport11)
AT1G44130.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G44120.1	protein_coding	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein		CELLULOSE SYNTHASE INTERACTIVE 2;(source:Araport11)
AT1G44110.1	protein_coding	Cyclin A1;1		Cyclin A1;(source:Araport11)
AT1G44100.1	protein_coding	amino acid permease 5	amino acid permease 5	amino acid permease 5;(source:Araport11)
AT1G44150.1	pseudogene			pseudogene of non-LTR retrolelement reverse transcriptase;(source:Araport11)
AT1G61030.1	protein_coding	WAPL (Wings apart-like protein regulation of heterochromatin) protein	Encodes one of two redundant proteins (the other is WAPL1) that are involved in prophase removal of cohesion during meiosis. Double mutants with wapl1 exhibit reduced fertility due to defects in meiosis and also some abnormal embryo development in rare cases where embryos are formed.	WAPL (Wings apart-like protein regulation of heterochromatin) protein;(source:Araport11)
AT1G61040.1	protein_coding	plus-3 domain-containing protein	Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family. Member of PAF-C complex.	plus-3 domain-containing protein;(source:Araport11)
AT1G60900.1	protein_coding	U2 snRNP auxilliary factor, large subunit, splicing factor	Putative U2A65 splicing factor which functions in abscisic acid mediated flowering via regulating the precursor messenger RNA splicing of ABI5 and FLC in shoot apex. Regulates flowering time and displays a redundant role in pollen tube growth together with AtU2AF65a.	U2 snRNP auxilliary factor, large subunit, splicing factor;(source:Araport11)
AT1G61050.1	protein_coding	alpha 1,4-glycosyltransferase family protein		alpha 1,4-glycosyltransferase family protein;(source:Araport11)
AT1G60960.1	protein_coding	iron regulated transporter 3	Encodes a plasma membrane localized zinc/iron transporter.	iron regulated transporter 3;(source:Araport11)
AT1G60920.1	protein_coding	AGAMOUS-like 55		AGAMOUS-like 55;(source:Araport11)
AT1G61060.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G60970.1	protein_coding	SNARE-like superfamily protein		SNARE-like superfamily protein;(source:Araport11)
AT1G60930.1	protein_coding	RECQ helicase L4B	AtRECQ4B mutant showed no sensitivity to DNA damaging agents.Involved in homologous recombination.	RECQ helicase L4B;(source:Araport11)
AT1G60980.1	protein_coding	gibberellin 20-oxidase 4		gibberellin 20-oxidase 4;(source:Araport11)
AT1G60940.1	protein_coding	SNF1-related protein kinase 2.10	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.	SNF1-related protein kinase 2.10;(source:Araport11)
AT1G60990.1	protein_coding	Glycine cleavage T-protein family	Encodes a chloroplast-localized COG0354 protein that requires folate for its function in Fe/S cluster biogenesis.	Glycine cleavage T-protein family;(source:Araport11)
AT1G61070.1	protein_coding	low-molecular-weight cysteine-rich 66	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	low-molecular-weight cysteine-rich 66;(source:Araport11)
AT1G60950.1	protein_coding	2Fe-2S ferredoxin-like superfamily protein	encodes a major leaf ferredoxin	2Fe-2S ferredoxin-like superfamily protein;(source:Araport11)
AT1G61080.1	protein_coding	Hydroxyproline-rich glycoprotein family protein		Hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G61000.1	protein_coding			kinetochore protein;(source:Araport11)
AT1G61010.1	protein_coding	cleavage and polyadenylation specificity factor 73-I		cleavage and polyadenylation specificity factor 73-I;(source:Araport11)
AT1G60880.1	protein_coding	AGAMOUS-like-56	Root Specific	AGAMOUS-like-56;(source:Araport11)
AT1G60890.1	protein_coding	Phosphatidylinositol-4-phosphate 5-kinase family protein		Phosphatidylinositol-4-phosphate 5-kinase family protein;(source:Araport11)
AT1G42540.1	protein_coding	glutamate receptor 3.3	member of Putative ligand-gated ion channel subunit family	glutamate receptor 3.3;(source:Araport11)
AT1G42480.1	protein_coding			TLR4 regulator/MIR-interacting MSAP protein;(source:Araport11)
AT1G42500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.8e-101 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G31430.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G31470.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G31440.1	protein_coding	SH3 domain-containing protein		SH3 domain-containing protein;(source:Araport11)
AT1G31420.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G31450.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G31460.1	protein_coding			vitellogenin-2 protein;(source:Araport11)
AT1G31410.1	protein_coding	putrescine-binding periplasmic protein-related		putrescine-binding periplasmic protein-like protein;(source:Araport11)
AT1G65250.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G65370.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT1G65380.1	protein_coding	Leucine-rich repeat (LRR) family protein	Receptor-like protein containing leucine-rich repeats. Regulates both meristem and organ development in Arabidopsis.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G65390.1	protein_coding	phloem protein 2 A5	Phloem Protein2 family gene encoding a two-domain protein containing predicted lectin and Toll/Interleukin-1 receptor domains, which is induced upon spider mite attack and improves the ability to defend against T. urticae by participating in the tight regulation of hormonal cross talk upon mite feeding.	phloem protein 2 A5;(source:Araport11)
AT1G65320.1	protein_coding	Cystathionine beta-synthase (CBS) family protein		Cystathionine beta-synthase (CBS) family protein;(source:Araport11)
AT1G65270.1	protein_coding			ER membrane protein complex subunit-like protein;(source:Araport11)
AT1G65410.1	protein_coding	non-intrinsic ABC protein 11	Encodes a member of NAP subfamily of transporters.  Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	non-intrinsic ABC protein 11;(source:Araport11)
AT1G65330.1	protein_coding	MADS-box transcription factor family protein	Type I MADS-box protein, regulated by MEA and FIE, expressed transiently after fertilization in embryo and endosperm.	MADS-box transcription factor family protein;(source:Araport11)
AT1G65280.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G65260.1	protein_coding	plastid transcriptionally active 4	Encodes a protein required for thylakoid membrane formation.	plastid transcriptionally active 4;(source:Araport11)
AT1G65340.1	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 3	member of CYP96A	cytochrome P450, family 96, subfamily A, polypeptide 3;(source:Araport11)
AT1G65290.1	protein_coding	mitochondrial acyl carrier protein 2	Encodes a member of the mitochondrial acyl carrier protein (ACP) family.  As part of the mitochondrial matrix, it is likely to be involved in fatty acid or lipoic acid biogenesis. The mRNA is cell-to-cell mobile.	mitochondrial acyl carrier protein 2;(source:Araport11)
AT1G65420.1	protein_coding	Protein of unknown function (DUF565)	Chloroplast localized YCF20-like gene involved in nonphotochemical quenching. Has overlapping functions with npq6.	antigen receptor-like protein (DUF565);(source:Araport11)
AT1G65350.1	protein_coding	ubiquitin 13	polyubiquitin gene,Columbia ecotype revealed that the gene contained a 3.9-kb insertion in the coding region from mitochondrial DNA.	ubiquitin 13;(source:Araport11)
AT1G65430.1	protein_coding	IBR domain-containing protein		IBR domain-containing protein;(source:Araport11)
AT1G65360.1	protein_coding	AGAMOUS-like 23	Encodes AGL23, a Type I MADS-box gene that controls female gametophyte development and the biogenesis of organelles during embryo development.	AGAMOUS-like 23;(source:Araport11)
AT1G65300.1	protein_coding	AGAMOUS-like 38	Encodes PHERES2, a homolog of PHERES1. PHERES1 and PHERES2 are both target genes of the FIS Polycomb group complex but only PHERES1 is regulated by genomic imprinting, which is likely caused by the presence of repeat sequences in the proximity of the PHERES1 locus.	AGAMOUS-like 38;(source:Araport11)
AT1G65440.1	protein_coding	global transcription factor group B1	Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. It encodes a putative WG/GW-repeat protein involved in the regulation of apical-basal polarity of embryo	global transcription factor group B1;(source:Araport11)
AT1G65310.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 17	Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC   2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.	xyloglucan endotransglucosylase/hydrolase 17;(source:Araport11)
AT1G65450.1	protein_coding	HXXXD-type acyl-transferase family protein	Contains dual transcription units and alternative splicing that could rescue the sterility defect of glc mutants. Shares homology to BAHD (for BEAT, AHCT, HCBT, and DAT) acyl-transferases. Functions in double fertilization.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G79570.1	protein_coding	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain		kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT1G79480.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G79400.1	protein_coding	cation/H+ exchanger 2	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 2;(source:Araport11)
AT1G79470.1	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT1G79390.1	protein_coding			centrosomal protein;(source:Araport11)
AT1G79500.1	protein_coding	Aldolase-type TIM barrel family protein	Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT1G79560.1	protein_coding	FTSH protease 12	Encodes an FtsH protease that is localized to the chloroplast and is part of a membrane localized translocation motor complex .Strong interaction with TIC inner envelope protein translocon which consists of Tic20/Tic56/Tic100/Tic214(Ycf1)(DOI:10.1105/tpc.18.00357). Mutations in this locus result in embryo lethality.	FTSH protease 12;(source:Araport11)
AT1G79490.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G79460.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein	Encodes for a protein with ent-kaurene synthase B activity which catalyzes the second step in the cyclization of GGPP to ent-kaurene in the gibberellins biosynthetic pathway.	Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT1G79380.1	protein_coding	Ca(2)-dependent phospholipid-binding protein (Copine) family	Encodes a ubiquitin ligase that is an essential upstream modulator of JA signaling in response to various stimuli.	Ca(2)-dependent phospholipid-binding protein (Copine) family;(source:Araport11)
AT1G79450.1	protein_coding	ALA-interacting subunit 5		ALA-interacting subunit 5;(source:Araport11)
AT1G79440.1	protein_coding	aldehyde dehydrogenase 5F1	Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH).  Nomenclature according to Kirch, et al (2004).	aldehyde dehydrogenase 5F1;(source:Araport11)
AT1G79550.1	protein_coding	phosphoglycerate kinase	Encodes cytosolic phosphoglycerate kinase (PGK3). Expression studies in PGK mutants showed that PGK1 and PGK3 were down-regulated in pgk3.2 and pgk1.1, respectively. These results indicate that the down-regulation of photosynthetic activity could be a plant strategy when glycolysis is impaired to achieve metabolic adjustment and optimize growth.	phosphoglycerate kinase;(source:Araport11)
AT1G79430.1	protein_coding	Homeodomain-like superfamily protein	Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene.  Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G79540.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G79420.1	protein_coding	Protein of unknown function (DUF620)		C-type mannose receptor (DUF620);(source:Araport11)
AT1G79410.1	protein_coding	organic cation/carnitine transporter5		organic cation/carnitine transporter5;(source:Araport11)
AT1G79530.1	protein_coding	glyceraldehyde-3-phosphate dehydrogenase of plastid 1	Encodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development, dwarfism and sterility. GAPCps are important for the synthesis of serine in roots.	glyceraldehyde-3-phosphate dehydrogenase of plastid 1;(source:Araport11)
AT1G79520.1	protein_coding	Cation efflux family protein		Cation efflux family protein;(source:Araport11)
AT1G79510.1	protein_coding	Uncharacterized conserved protein (DUF2358)		hypothetical protein (DUF2358);(source:Araport11)
AT1G57630.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT1G57570.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G57650.1	protein_coding	ATP binding		ATP binding protein;(source:Araport11)
AT1G57750.1	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 15	Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.	cytochrome P450, family 96, subfamily A, polypeptide 15;(source:Araport11)
AT1G57580.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G57660.1	protein_coding	Translation protein SH3-like family protein		Translation protein SH3-like family protein;(source:Araport11)
AT1G57760.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT1G57590.1	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT1G57670.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT1G57600.1	protein_coding	MBOAT (membrane bound O-acyl transferase) family protein		MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT1G57680.1	protein_coding			plasminogen activator inhibitor;(source:Araport11)
AT1G57610.1	protein_coding	Protein of unknown function (DUF607)		calcium uniporter (DUF607);(source:Araport11)
AT1G57690.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G57620.1	protein_coding	emp24/gp25L/p24 family/GOLD family protein		emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT1G57700.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G57640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-193 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT1G57720.1	protein_coding	Translation elongation factor EF1B, gamma chain		Translation elongation factor EF1B, gamma chain;(source:Araport11)
AT1G57730.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G32560.1	protein_coding	Late embryogenesis abundant protein, group 1 protein	Encodes LEA4-1, a member of the Late Embryogenesis Abundant (LEA) proteins which typically accumulate in response to low water availability conditions imposed during development or by the environment.	Late embryogenesis abundant protein, group 1 protein;(source:Araport11)
AT1G32570.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G32580.1	protein_coding	plastid developmental protein DAG, putative	Member of MORF family consisting of of nine full-length proteins encoded in the nuclear genome. MORF proteins are required for all RNA editing events in plastids and for many, possibly also all, sites in mitochondria. Potential link between the RNA binding PPR protein and the protein contributing the enzymatic activity in RNA editing.	plastid developmental protein DAG;(source:Araport11)
AT1G32550.1	protein_coding	2Fe-2S ferredoxin-like superfamily protein	Encodes FdC2, a ferredoxin protein capable of alternative electron partitioning.  FdC1 level increases in conditions of acceptor limitation at PSI.	2Fe-2S ferredoxin-like superfamily protein;(source:Araport11)
AT1G32540.1	protein_coding	lsd one like 1	Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.	lsd one like 1;(source:Araport11)
AT1G35300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-38 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G35310.1	protein_coding	MLP-like protein 168		MLP-like protein 168;(source:Araport11)
AT1G35230.1	protein_coding	arabinogalactan protein 5	Encodes arabinogalactan-protein (AGP5). The mRNA is cell-to-cell mobile.	arabinogalactan protein 5;(source:Araport11)
AT1G35320.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G35240.1	protein_coding	auxin response factor 20		auxin response factor 20;(source:Araport11)
AT1G35330.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G35250.1	protein_coding	Thioesterase superfamily protein		Thioesterase superfamily protein;(source:Araport11)
AT1G35340.1	protein_coding	ATP-dependent protease La (LON) domain protein		ATP-dependent protease La (LON) domain protein;(source:Araport11)
AT1G35260.1	protein_coding	MLP-like protein 165		MLP-like protein 165;(source:Araport11)
AT1G35350.1	protein_coding	EXS (ERD1/XPR1/SYG1) family protein		EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT1G35280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.5e-207 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT1G35290.1	protein_coding	Thioesterase superfamily protein		Thioesterase superfamily protein;(source:Araport11)
AT1G35370.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.7e-191 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G73480.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G73470.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G73540.1	protein_coding	nudix hydrolase homolog 21		nudix hydrolase homolog 21;(source:Araport11)
AT1G73460.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G73390.1	protein_coding	Endosomal targeting BRO1-like domain-containing protein		Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT1G73530.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G73450.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G73380.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G73370.1	protein_coding	sucrose synthase 6	Encodes a protein with sucrose synthase activity (SUS6).	sucrose synthase 6;(source:Araport11)
AT1G73440.1	protein_coding	calmodulin-related		calmodulin-like protein;(source:Araport11)
AT1G73510.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G73360.1	protein_coding	homeodomain GLABROUS 11	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  It is involved in trichome branching. The transcription factor directly upregulates the expression of several cell-wall-loosening protein genes and reveals the important role that these target genes play in coordinating cell-wall extensibility with root development.	homeodomain GLABROUS 11;(source:Araport11)
AT1G73500.1	protein_coding	MAP kinase kinase 9	member of MAP Kinase Kinase family. Autophosphorylates and also phosphorylates MPK3 and MPK6. Independently involved in ethylene and calmalexin biosynthesis. Induces transcription of ACS2, ACS6, ERF1, ERF2, ERF5, ERF6, CYP79B2, CYP79B3, CYP71A13 and PAD3.	MAP kinase kinase 9;(source:Araport11)
AT1G73430.1	protein_coding	sec34-like family protein	COG3 is a component of a putative  conserved oligomeric Golgi (COG) complex that is thought to be involved in tethering of retrograde intra Golgi vesicles. In mutant pollen,golgi appear abnormal. It is required for proper deposition of cell wall materials in pollen tube growth. When homozygotes can be produced (by complementing the defect in pollen), the plants are embryo lethal suggesting an essential function. COG3 interacts with several other putative COG components.	sec34-like family protein;(source:Araport11)
AT1G73350.1	protein_coding			ankyrin repeat protein;(source:Araport11)
AT1G73340.1	protein_coding	Cytochrome P450 superfamily protein	ADTO1 is required for the activation of systemic acquired resistance.	Cytochrome P450 superfamily protein;(source:Araport11)
AT1G73330.1	protein_coding	drought-repressed 4	encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level.	drought-repressed 4;(source:Araport11)
AT1G73410.1	protein_coding	myb domain protein 54	Encodes a putative transcription factor that is a member of the  R2R3-MYB  family.	myb domain protein 54;(source:Araport11)
AT1G73400.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G73490.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G33110.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G33120.1	protein_coding	Ribosomal protein L6 family		Ribosomal protein L6 family;(source:Araport11)
AT1G33040.1	protein_coding	nascent polypeptide-associated complex subunit alpha-like protein 5		nascent polypeptide-associated complex subunit alpha-like protein 5;(source:Araport11)
AT1G33130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-125 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G72230.1	protein_coding	Cupredoxin superfamily protein		Cupredoxin superfamily protein;(source:Araport11)
AT1G72140.1	protein_coding	Major facilitator superfamily protein	Tonoplast localized pH dependent, low affinity nitrogen transporter.In shoots,  expressed in leaf veins and mesophyll. In roots, GUS activity was detected in root vascular stele. More highly expressed in roots.	Major facilitator superfamily protein;(source:Araport11)
AT1G72240.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G72150.1	protein_coding	PATELLIN 1	novel cell-plate-associated protein that is related in sequence to proteins involved in membrane trafficking in other eukaryotes The mRNA is cell-to-cell mobile.	PATELLIN 1;(source:Araport11)
AT1G72250.1	protein_coding	Di-glucose binding protein with Kinesin motor domain		Di-glucose binding protein with Kinesin motor domain-containing protein;(source:Araport11)
AT1G72160.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G72170.1	protein_coding	Domain of unknown function (DUF543)		MICOS complex subunit, putative (DUF543);(source:Araport11)
AT1G72200.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G72280.1	protein_coding	endoplasmic reticulum oxidoreductins 1	Encodes an oxidoreductin required for oxidative protein folding in the ER and exists in two distinct oxidized isoforms (Ox1 and Ox2), which are determined by the formation or breakage of the putative regulatory disulfide. AtERO1 is mainly present in the Ox1 redox state.	endoplasmic reticulum oxidoreductins 1;(source:Araport11)
AT1G72180.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Encodes a leucine-rich repeat receptor kinase that functions as a receptor for CEP1 peptide. Mediates nitrate uptake signaling.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT1G72290.1	protein_coding	Kunitz family trypsin and protease inhibitor protein	Encodes a Kunitz-protease inhibitor, a water-soluble chlorophyll protein involved in herbivore resistance activation.	Kunitz family trypsin and protease inhibitor protein;(source:Araport11)
AT1G72190.1	protein_coding	D-isomer specific 2-hydroxyacid dehydrogenase family protein		D-isomer specific 2-hydroxyacid dehydrogenase family protein;(source:Araport11)
AT1G72270.1	protein_coding		Encodes IDAP1. Acts together with IDAP2 and IDM1 to regulate active DNA demethylation.	nucleolar pre-ribosomal-associated protein;(source:Araport11)
AT1G72300.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of PSY1.  PSY1 is an 18-aa tyrosine-sulfated glycopeptide encoded by AT5G58650 that promotes cellular proliferation and expansion.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT1G72210.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G72220.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G05300.1	protein_coding	zinc transporter 5 precursor	member of Fe(II) transporter isolog family	zinc transporter 5 precursor;(source:Araport11)
AT1G05140.1	protein_coding	Peptidase M50 family protein		Peptidase M50 family protein;(source:Araport11)
AT1G05210.1	protein_coding	Transmembrane protein 97, predicted		Transmembrane protein 97, Putative;(source:Araport11)
AT1G05290.1	protein_coding	CCT motif family protein	Member of the CONSTANS-Like protein family which is a putative regulator of reactive oxygen species homeostasis.	CCT motif family protein;(source:Araport11)
AT1G05200.1	protein_coding	glutamate receptor 3.4	Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.	glutamate receptor 3.4;(source:Araport11)
AT1G05280.1	protein_coding	Protein of unknown function (DUF604)		ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604);(source:Araport11)
AT1G05360.1	protein_coding		KMS2 encode a endoplasmic reticulum protein  involved in the early secretory pathway.	vacuole membrane-like protein;(source:Araport11)
AT1G05350.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G05190.1	protein_coding	Ribosomal protein L6 family	Encodes the plastid 50S ribosomal protein L6.	Ribosomal protein L6 family;(source:Araport11)
AT1G05340.1	protein_coding			cysteine-rich TM module stress tolerance protein;(source:Araport11)
AT1G05330.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G05270.1	protein_coding	TraB family protein		TraB family protein;(source:Araport11)
AT1G05260.1	protein_coding	Peroxidase superfamily protein	Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. The mRNA is cell-to-cell mobile.	Peroxidase superfamily protein;(source:Araport11)
AT1G05250.1	protein_coding	Peroxidase superfamily protein	Encodes a cationic cell-wall-bound peroxidase homolog that is involved in the lignification of cell walls.	Peroxidase superfamily protein;(source:Araport11)
AT1G05180.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses.  Acts alongside AS1 to exclude BP expression from leaves. Promotes degradation of the cytokinin response repressor ARR5.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G05170.1	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT1G05320.1	protein_coding			myosin heavy chain, embryonic smooth protein;(source:Araport11)
AT1G05230.1	protein_coding	homeodomain GLABROUS 2	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes.  The mutations do not affect trichome growth or branch number.	homeodomain GLABROUS 2;(source:Araport11)
AT1G05160.1	protein_coding	cytochrome P450, family 88, subfamily A, polypeptide 3	Encodes an ent-kaurenoic acid hydroxylase, a  member of the CYP88A cytochrome p450 family.	cytochrome P450, family 88, subfamily A, polypeptide 3;(source:Araport11)
AT1G05310.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G05220.1	protein_coding	Transmembrane protein 97, predicted		Transmembrane protein 97, Putative;(source:Araport11)
AT1G05150.1	protein_coding	Calcium-binding tetratricopeptide family protein		Calcium-binding tetratricopeptide family protein;(source:Araport11)
AT1G79220.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G79030.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G79190.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G78980.1	protein_coding	STRUBBELIG-receptor family 5		STRUBBELIG-receptor family 5;(source:Araport11)
AT1G79010.1	protein_coding	Alpha-helical ferredoxin		Alpha-helical ferredoxin;(source:Araport11)
AT1G79170.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G79000.1	protein_coding	histone acetyltransferase of the CBP family 1	Homologous to CREB-binding protein, a co-activator of transcription with histone acetyl-transferase activity. No  single prior lysine acetylation is sufficient to block HAC1 acetylation of the H3 or H4 peptides,  suggesting that HAC1, HAC5, and HAC12 can acetylate any  of several lysines present in the peptides. HAM2 acetylates histone H4 lysine 5. A plant line expressing an RNAi construct targeted against HAC1 has reduced rates of agrobacterium-mediated root transformation.	histone acetyltransferase of the CBP family 1;(source:Araport11)
AT1G78960.1	protein_coding	lupeol synthase 2	Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.	lupeol synthase 2;(source:Araport11)
AT1G79160.1	protein_coding			filamentous hemagglutinin transporter;(source:Araport11)
AT1G78970.1	protein_coding	lupeol synthase 1	Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17&#946;-dammarenyl cation.	lupeol synthase 1;(source:Araport11)
AT1G78950.1	protein_coding	Terpenoid cyclases family protein		Terpenoid cyclases family protein;(source:Araport11)
AT1G79040.1	protein_coding	photosystem II subunit R	Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.	photosystem II subunit R;(source:Araport11)
AT1G78940.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT1G79180.1	protein_coding	myb domain protein 63	Member of the R2R3 factor gene family.	myb domain protein 63;(source:Araport11)
AT1G79200.1	protein_coding		Encodes a nuclear localized protein involved in auxin-dependent control of cell proliferation in pistil development. Loss of function mutations have increased cell proliferation in the stigma.	splicing regulatory glutamine/lysine-rich-like protein;(source:Araport11)
AT1G79210.1	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein		N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT1G79230.1	protein_coding	mercaptopyruvate sulfurtransferase 1	encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification.	mercaptopyruvate sulfurtransferase 1;(source:Araport11)
AT1G79340.1	protein_coding	metacaspase 4	Encodes MCP2d, the predominant and constitutively expressed member of type II metacaspases (MCPs). MCP2d plays a positive regulatory role in biotic and abiotic stress-induced programmed cell death (PCD). Arabidopsis contains three type I MCP genes (MCP1a-c) and six type II MCP genes (MCP2a–f): AtMCP1a/At5g64240, AtMCP1b/At1g02170, AtMCP1c/At4g25110, AtMCP2a/At1g79310, AtMCP2b/At1g79330, AtMCP2c/At1g79320, AtMCP2d/At1g79340, AtMCP2e/At1g16420, AtMCP2f/At5g04200. The mRNA is cell-to-cell mobile.	metacaspase 4;(source:Araport11)
AT1G79370.1	protein_coding	cytochrome P450, family 79, subfamily C, polypeptide 1	member of CYP79C	cytochrome P450, family 79, subfamily C, polypeptide 1;(source:Araport11)
AT1G79360.1	protein_coding	organic cation/carnitine transporter 2		organic cation/carnitine transporter 2;(source:Araport11)
AT1G79350.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein	Encodes the Arabidopsis thaliana orthologue of metazoan Strawberry notch, a highly conserved co-activator of the developmental regulator Notch. It mediates stress-induced chromatin memory by modulating nucleosome occupancy by interacting with chromatin remodeling proteins of the ISWI and SWI/SNF classes.	RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G79150.1	protein_coding	binding		binding protein;(source:Araport11)
AT1G79130.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G79120.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT1G79110.1	protein_coding	zinc ion binding	Encodes one of the BRGs (BOI-related gene) involved in resistance to Botrytis cinerea.	zinc ion binding protein;(source:Araport11)
AT1G79280.1	protein_coding	nuclear pore anchor	Encodes a 237-kDA protein with similarity to vertebrate Tpr, a long coiled-coil proteins of nuclear pore inner basket filaments.  It is localized to the inner surface of the nuclear envelope and is a component of the nuclear pore-associated steps of sumoylation and mRNA export in plants.  Mutations affect flowering time regulation and other developmental processes.  Probably acts in the same pathway as ESD4 in affecting flowering time, vegetative and inflorescence development.	nuclear pore anchor;(source:Araport11)
AT1G79100.1	protein_coding	arginine/serine-rich protein-related		arginine/serine-rich protein-like protein;(source:Araport11)
AT1G79090.1	protein_coding		Encodes a component of the mRNA decapping machinery that is found in complexes with and is phosphorylated by MPK4.  The protein can be found in P-bodies after treatment with PAMPs. Pat1 mutants exhibit dwarfism and de-repressed immunity dependent on the immune receptor SUMM2.  The pat1 constitutive defense phenotype is suppressed by summ2 such that pat1 summ2 mutants display a wild-type phenotype in response to biotrophic and necrotrophic pathogens.	topoisomerase II-associated protein;(source:Araport11)
AT1G79270.1	protein_coding	evolutionarily conserved C-terminal region 8		evolutionarily conserved C-terminal region 8;(source:Araport11)
AT1G78990.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G79080.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G78930.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G79070.1	protein_coding	SNARE-associated protein-related		SNARE-associated protein-like protein;(source:Araport11)
AT1G79330.1	protein_coding	metacaspase 5	Metacaspase AtMCPb2/AMC6. Caspase family protein. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam domain, PF00656: ICE-like protease (caspase) p20 domain.  Arabidopsis contains three type I MCP genes (MCP1a-c) and six type II MCP genes (MCP2a–f): AtMCP1a/At5g64240, AtMCP1b/At1g02170, AtMCP1c/At4g25110, AtMCP2a/At1g79310, AtMCP2b/At1g79330, AtMCP2c/At1g79320, AtMCP2d/At1g79340, AtMCP2e/At1g16420, AtMCP2f/At5g04200.	metacaspase 5;(source:Araport11)
AT1G79060.1	protein_coding			TPRXL;(source:Araport11)
AT1G79320.1	protein_coding	metacaspase 6	Encodes a putative metacaspase.  Arabidopsis contains three type I MCP genes (MCP1a-c) and six type II MCP genes (MCP2a–f): AtMCP1a/At5g64240, AtMCP1b/At1g02170, AtMCP1c/At4g25110, AtMCP2a/At1g79310, AtMCP2b/At1g79330, AtMCP2c/At1g79320, AtMCP2d/At1g79340, AtMCP2e/At1g16420, AtMCP2f/At5g04200.	metacaspase 6;(source:Araport11)
AT1G79050.1	protein_coding	recA DNA recombination family protein		recA DNA recombination family protein;(source:Araport11)
AT1G79310.1	protein_coding	metacaspase 7	Encodes a putative metacaspase.  Arabidopsis contains three type I MCP genes (MCP1a-c) and six type II MCP genes (MCP2a–f): AtMCP1a/At5g64240, AtMCP1b/At1g02170, AtMCP1c/At4g25110, AtMCP2a/At1g79310, AtMCP2b/At1g79330, AtMCP2c/At1g79320, AtMCP2d/At1g79340, AtMCP2e/At1g16420, AtMCP2f/At5g04200.	metacaspase 7;(source:Araport11)
AT1G79020.1	protein_coding	Enhancer of polycomb-like transcription factor protein		Enhancer of polycomb-like transcription factor protein;(source:Araport11)
AT1G79260.1	protein_coding			nitrobindin heme-binding domain protein;(source:Araport11)
AT1G79250.1	protein_coding	AGC kinase 1.7		AGC kinase 1.7;(source:Araport11)
AT5G14520.1	protein_coding	pescadillo-related	Encodes a nucleolar protein that plays an essential role in cell growth and survival through its regulation of ribosome biogenesis and mitotic progression.	pescadillo-like protein;(source:Araport11)
AT5G14530.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a low molecular weight nuclear WDR protein which displays functional homology to the Swd2 protein, an essential subunit of the yeast histone methylation COMPASS complex. APRF1  acts upstream of FLC and promotes flowering under long day conditions.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G14610.1	protein_coding	DEAD box RNA helicase family protein		DEAD box RNA helicase family protein;(source:Araport11)
AT5G14540.1	protein_coding	Protein of unknown function (DUF1421)		basic salivary proline-rich-like protein (DUF1421);(source:Araport11)
AT5G14620.1	protein_coding	domains rearranged methyltransferase 2	A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains.  The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues.	domains rearranged methyltransferase 2;(source:Araport11)
AT5G14550.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G14640.1	protein_coding	shaggy-like kinase 13		shaggy-like kinase 13;(source:Araport11)
AT5G14560.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G14570.1	protein_coding	high affinity nitrate transporter 2.7	Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds.  Expression is detected in reproductive organs and peaks in seeds.  Localized to the vacuolar membrane.	high affinity nitrate transporter 2.7;(source:Araport11)
AT5G14650.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G14580.1	protein_coding	polyribonucleotide nucleotidyltransferase, putative		polyribonucleotide nucleotidyltransferase;(source:Araport11)
AT5G14660.1	protein_coding	peptide deformylase 1B	Encodes a peptide deformylase PDF1B.  The crystal structure has been determined at a resolution of 0.24 nm (Biochem J, 2008, vol 413:417-427).	peptide deformylase 1B;(source:Araport11)
AT5G14590.1	protein_coding	Isocitrate/isopropylmalate dehydrogenase family protein		Isocitrate/isopropylmalate dehydrogenase family protein;(source:Araport11)
AT5G14670.1	protein_coding	ADP-ribosylation factor A1B	A member of ARF GTPase family. Arabidopsis has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor DcARF1 (GI:965483) (Daucus carota), other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	ADP-ribosylation factor A1B;(source:Araport11)
AT5G14600.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G14680.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT1G34460.1	protein_coding	CYCLIN B1;5	B1 type cyclin	CYCLIN B1;(source:Araport11)
AT1G47690.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G24490.1	protein_coding	OxaA/YidC-like membrane insertion protein	Homologue of the Alb3/Oxa1/YidC family. ALB4 is almost identical to the Alb3/Oxa1/YidC domain of the previously described 110 kDa inner envelope protein ARTEMIS. However, ALB4 is expressed as a separate 55 kDa protein and is located in the thylakoid membrane of chloroplasts. Analysis of a T-DNA insertion line with a reduced level of Alb4 revealed chloroplasts with an altered ultrastructure. Mutant plastids are larger, more spherical in appearance and the grana stacks within the mutant lines are less appressed than in the wild-type chloroplasts. ALB4 is required for proper chloroplast biogenesis. The mRNA is cell-to-cell mobile.	OxaA/YidC-like membrane insertion protein;(source:Araport11)
AT1G38290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.8e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G53890.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT1G53900.1	protein_coding	Eukaryotic translation initiation factor 2B (eIF-2B) family protein		Eukaryotic translation initiation factor 2B (eIF-2B) family protein;(source:Araport11)
AT1G05240.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT1G60095.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G60150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 28%25 identity and 3.6e-07 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus};(source:TAIR10)
AT1G60290.1	pseudogene			pseudogene of Chalcone-flavanone isomerase family protein;(source:Araport11)
AT1G58025.1	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT1G36680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.6e-22 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G36660.1	pseudogene			pseudogene of FAR1-related sequence 5;(source:Araport11)
AT1G36710.1	pseudogene			pseudogene of Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT1G36650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase, blastp match of 26%25 identity and 8.3e-12 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT1G36720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.3e-308 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G36750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G36630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 2.5e-213 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT1G36740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 8.4e-16 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT1G36700.1	pseudogene			pseudogene of Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT1G36690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.8e-68 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G22350.1	pseudogene			pseudogene of UDP-glucosyl transferase 85A5;(source:Araport11)
AT1G44286.1	pseudogene			pseudogene of Aldolase superfamily protein;(source:Araport11)
AT1G73175.1	pseudogene		This is described as a LINE; it is present at this location in 83 natural accessions of Arabidopsis, including Col-0, but it is not present in 13 natural accessions including Cvi-0. This locus is normally methylated in wild type Col plants. BONSAI (At1g73177), an adjacent gene, can become hypermethylated in a ddm1 (At5g66750) mutant, and this seems to depends on the presence of the LINE. But, transcript levels of the gene on the other side of the LINE (At1g73170) do not drop in ddm1 mutant plants.	pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT1G35870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.4e-152 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G35840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT1G48340.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G48810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.2e-46 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G48680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-298 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G51175.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.2e-181 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G34967.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.6e-83 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G67855.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G67810.1	protein_coding	sulfur E2	Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis. The mRNA is cell-to-cell mobile.	sulfur E2;(source:Araport11)
AT1G67660.1	protein_coding	Restriction endonuclease, type II-like superfamily protein		Restriction endonuclease, type II-like superfamily protein;(source:Araport11)
AT1G35450.1	pseudogene			pseudogene of Ribonuclease H-like superfamily protein;(source:Araport11)
AT1G35465.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-27 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G35405.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.3e-227 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT1G35390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.6e-43 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT1G67645.1	pseudogene			pseudogene of F-box protein (DUF295);(source:Araport11)
AT1G67610.1	pseudogene			pseudogene of F-box protein (DUF295);(source:Araport11)
AT1G67626.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G65875.1	pseudogene			pseudogene of AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G42816.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.0e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G42888.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.6e-24 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G42727.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.4e-35 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G42736.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.6e-20 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G42924.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT1G42852.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.4e-64 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G42780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.2e-217 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G31993.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.8e-142 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G42745.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G57943.1	protein_coding	purine permease 17	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 17;(source:Araport11)
AT1G57906.1	protein_coding			F-box protein;(source:Araport11)
AT1G49440.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.6e-05 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT1G32045.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.7e-07 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT1G31983.1	pseudogene			pseudogene of F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G63860.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G63920.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G60330.1	pseudogene			pseudogene of Chalcone-flavanone isomerase family protein;(source:Araport11)
AT1G04985.1	protein_coding			triacylglycerol lipase-like protein;(source:Araport11)
AT1G56490.1	pseudogene			pseudogene of Pectin lyase-like superfamily protein;(source:Araport11)
AT1G56480.1	pseudogene			pseudogene of Pectin lyase-like superfamily protein;(source:Araport11)
AT1G56390.1	pseudogene			pseudogene of calreticulin 1a;(source:Araport11)
AT1G56470.1	pseudogene			pseudogene of Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G60310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.0e-12 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT1G60120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.3e-38 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi);(source:TAIR10)
AT1G36270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 6.5e-118 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT1G36290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.7e-09 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT1G36185.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G44350.1	protein_coding	IAA-leucine resistant (ILR)-like gene 6	encodes a protein similar to IAA amino acid conjugate hydrolase.	IAA-amino acid hydrolase ILR1-like 6;(source:Araport11)
AT1G36210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-71 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G36220.1	pseudogene			pseudogene of seryl-tRNA synthetase / serine-tRNA ligase;(source:Araport11)
AT1G36225.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 6.4e-18 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G36200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.7e-150 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT1G36250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.0e-18 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G44318.1	protein_coding	Aldolase superfamily protein		Aldolase superfamily protein;(source:Araport11)
AT1G44382.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G44575.1	protein_coding	Chlorophyll A-B binding family protein	Encoding PSII-S (CP22), a ubiquitous pigment-binding protein associated with photosystem II (PSII) of higher plants. Involved in nonphotochemical quenching rather than in photosynthesis. Mutant has a normal violaxanthin cycle but has a limited capacity of quenching singlet excited chlorophylls and is tolerant to lipid peroxidation.	Chlorophyll A-B binding family protein;(source:Araport11)
AT1G44641.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G29475.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.8e-91 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G29360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.1e-24 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G70885.1	pseudogene			pseudogene of MLP-like protein 31;(source:Araport11)
AT1G70860.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G35617.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G44542.1	protein_coding	Cyclase family protein		Cyclase family protein;(source:Araport11)
AT1G44510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT1G44478.1	protein_coding	Cyclophilin		Cyclophilin;(source:Araport11)
AT1G44707.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G44446.1	protein_coding	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain	Encodes chlorophyllide <i>a</i> oxygenase which converts chlorophyllide <i>a</i> to chlorophyllide <i>b</i> by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide <i>a</i> .  Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll <i>b</i> and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22.	Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein;(source:Araport11)
AT1G35690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OSJNBb0041J06.18, blastp match of 27%25 identity and 1.6e-07 P-value to GP|27818010|dbj|BAC55773.1||AP005176 OSJNBb0041J06.18 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT1G35650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1);(source:TAIR10)
AT1G35516.1	protein_coding	myb-like transcription factor family protein		myb-like transcription factor family protein;(source:Araport11)
AT1G35625.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G44608.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G44414.1	protein_coding			zinc-ribbon domain protein;(source:Araport11)
AT1G31355.1	pseudogene			pseudogene of Translation protein SH3-like family protein;(source:Araport11)
AT1G35645.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 6.9e-78 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G35647.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.6e-209 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G19415.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.1e-43 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G19420.1	pseudogene			pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G42230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G30030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.5e-30 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT1G36010.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.8e-40 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT1G42070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.2e-08 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G51805.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G16620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 5.7e-158 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G16550.1	pseudogene		Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in   PMID:27791167	pseudogene of cell division cycle 48C;(source:Araport11)
AT1G16600.1	pseudogene			pseudogene of camelliol C synthase 1;(source:Araport11)
AT1G35995.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.4e-38 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G27815.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.0e-77 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G54660.1	pseudogene		Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of terpene synthase 21;(source:Araport11)
AT1G54600.1	pseudogene			pseudogene of F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G16660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.0e-268 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G62230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G65750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.9e-18 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT1G43150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.3e-25 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G54750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G23920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.6e-77 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G11545.1	protein_coding	xyloglucan endotransglucosylase/hydrolase 8		xyloglucan endotransglucosylase/hydrolase 8;(source:Araport11)
AT1G11475.1	protein_coding	RNA polymerases N / 8 kDa subunit	Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB10.	RNA polymerases N / 8 kDa subunit;(source:Araport11)
AT1G11595.1	pseudogene			pseudogene of Nucleotide/sugar transporter family protein;(source:Araport11)
AT1G43270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.0e-37 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G43210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.3e-81 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G43250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.0e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G43180.1	pseudogene			pseudogene of NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT1G43280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 6.6e-47 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G33510.1	pseudogene			pseudogene of Ribonuclease H-like superfamily protein;(source:Araport11)
AT1G38790.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G39430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43100.1);(source:TAIR10)
AT1G28620.1	pseudogene			pseudogene of GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G66990.1	pseudogene			pseudogene of suppressor of npr1-1 constitutive 4;(source:Araport11)
AT1G08800.1	protein_coding	Protein of unknown function, DUF593		myosin-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT1G08735.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G80790.1	protein_coding	XH/XS domain-containing protein	Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5). The mRNA is cell-to-cell mobile.	XH/XS domain-containing protein;(source:Araport11)
AT1G38710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.8e-117 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G39350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT1G39270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.7e-105 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT1G39190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 6.1e-139 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT1G39110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-25 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G39510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-36 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G39030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.6e-38 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G38870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.7e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G06645.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G34545.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.0e-112 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G34600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.1e-135 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G57810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 29%25 identity and 1.1e-12 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus};(source:TAIR10)
AT1G59725.1	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT1G51050.1	pseudogene			pseudogene of F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G51085.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G34250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G57840.1	pseudogene			pseudogene of Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G22560.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.4e-20 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT1G22580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 32%25 identity and 1.1e-13 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus};(source:TAIR10)
AT1G34230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OSJNBb0041J06.18, blastp match of 33%25 identity and 2.8e-10 P-value to GP|27818010|dbj|BAC55773.1||AP005176 OSJNBb0041J06.18 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT1G62766.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 6.1e-299 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G62695.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Unknown protein, blastp match of 30%25 identity and 1.6e-09 P-value to GP|22773232|gb|AAN06838.1||AC099401 Unknown protein {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT1G62835.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G64730.1	pseudogene			pseudogene of NADH-Ubiquinone oxidoreductase (complex I);(source:Araport11)
AT1G55035.1	pseudogene			pseudogene of importin alpha isoform 1;(source:Araport11)
AT1G54955.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05145.1);(source:TAIR10)
AT1G54926.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47240.1);(source:TAIR10)
AT1G54923.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30816.1);(source:TAIR10)
AT1G07745.1	protein_coding	homolog of RAD51 D	Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.	DNA repair RAD51-like protein;(source:Araport11)
AT1G63760.1	pseudogene			pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT1G69590.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G21490.1	pseudogene			pseudogene of F-box/associated interaction domain protein;(source:Araport11)
AT1G54985.1	pseudogene			pseudogene of receptor like protein 13;(source:Araport11)
AT1G54905.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.3e-08 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G35735.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.7e-113 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT1G25784.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.7e-80 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G25682.1	protein_coding	Family of unknown function (DUF572) 		coiled-coil protein (DUF572);(source:Araport11)
AT1G25886.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14770.2);(source:TAIR10)
AT1G25988.1	protein_coding	Family of unknown function (DUF572) 		coiled-coil protein, putative (DUF572);(source:Araport11)
AT1G50330.1	pseudogene			pseudogene of methylesterase PCR A;(source:Araport11)
AT1G50210.1	pseudogene			pseudogene of NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT1G21470.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G56675.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.7e-196 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G45040.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G45030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Putative non-LTR retroelement reverse transcriptase, blastp match of 40%25 identity and 2.1e-08 P-value to GP|14028978|gb|AAK52519.1|AC079128_2|AC079128 Putative non-LTR retroelement reverse transcriptase {Oryza sativa};(source:TAIR10)
AT1G33740.1	pseudogene			pseudogene of TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT1G45020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.6e-248 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT1G45035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G45145.1	protein_coding	thioredoxin H-type 5	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.	thioredoxin H-type 5;(source:Araport11)
AT1G45070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.5e-84 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G35700.1	pseudogene			pseudogene of ubiquitin-conjugating enzyme 11;(source:Araport11)
AT1G49070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 5.1e-158 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT1G49080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to Antirrhinum majus TNP2 protein gb|AAD17349.1;(source:TAIR10)
AT1G49060.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G48890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.9e-32 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT1G35513.1	pseudogene		pseudogene of isochorismate synthase-related / isochorismate mutase-related	pseudogene of ADC synthase superfamily protein;(source:Araport11)
AT1G35612.1	transposable_element_gene	transposable element gene	pseudogene of Ulp1 protease family protein	transposable_element_gene;(source:Araport11);expressed protein;(source:TAIR10)
AT1G35614.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G35535.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.6e-252 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G35663.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to DNA binding / transposase [Arabidopsis thaliana] (TAIR:AT4G04635.1);(source:TAIR10)
AT1G21260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.4e-23 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G43785.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.7e-174 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT1G43775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.6e-147 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT1G36300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-218 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G42045.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.1e-123 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT1G42003.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to gag-pol polyprotein, blastp match of 50%25 identity and 8.2e-42 P-value to GP|22296822|gb|AAM94350.1||AY129008 gag-pol polyprotein {Zea mays};(source:TAIR10)
AT1G63205.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT1G30935.1	pseudogene		Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of F-box family protein;(source:Araport11)
AT1G30925.1	protein_coding	phospholipase Cs		F-box/associated interaction domain protein;(source:Araport11)
AT1G27285.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G19560.1	pseudogene			pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G67010.1	pseudogene			pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT1G67035.1	protein_coding			homeobox Hox-B3-like protein;(source:Araport11)
AT1G43883.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.1e-193 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT1G43830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-118 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT1G38350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-278 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38423.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-57 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G17275.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.8e-31 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G03445.1	protein_coding	Serine/threonine protein phosphatase family protein	encodes a serine–threonine protein phosphatase with an N-terminal Kelch-repeat domain, which is nuclear localized and expressed preferentially in elongating cells. Genetic evidence suggest that this gene plays a redundant role (along with other members of the same gene family) in modulating growth in response to brassinosteroid.	Serine/threonine protein phosphatase family protein;(source:Araport11)
AT1G03495.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G38300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.7e-61 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.0e-98 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT1G20816.1	protein_coding			outer envelope pore-like protein;(source:Araport11)
AT1G20823.1	protein_coding	RING/U-box superfamily protein	Encodes a RING E3 ubiquitin ligase ATL80. Involved in phosphate mobilization and cold stress response in sufficient phosphate growth conditions. The mRNA is cell-to-cell mobile.	RING/U-box superfamily protein;(source:Araport11)
AT1G03687.1	protein_coding	DTW domain-containing protein		DTW domain-containing protein;(source:Araport11)
AT1G03475.1	protein_coding	Coproporphyrinogen III oxidase	Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.	Coproporphyrinogen III oxidase;(source:Araport11)
AT1G03457.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G45332.1	protein_coding	Translation elongation factor EFG/EF2 protein		Translation elongation factor EFG/EF2 protein;(source:Araport11)
AT1G46264.1	protein_coding	heat shock transcription factor  B4	Encodes SCHIZORIZA, a member of Heat Shock Transcription Factor (Hsf) family. Functions as a nuclear factor regulating asymmetry of stem cell divisions.	heat shock transcription factor B4;(source:Araport11)
AT1G45403.1	protein_coding	membrane protein		membrane protein;(source:Araport11)
AT1G47056.1	protein_coding	VIER F-box proteine 1	Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB2,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.	VIER F-box protein 1;(source:Araport11)
AT1G45474.1	protein_coding	photosystem I light harvesting complex gene 5	Encodes a component of the light harvesting complex of photosystem I.	photosystem I light harvesting complex protein 5;(source:Araport11)
AT1G13660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.6e-36 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G34680.1	pseudogene			pseudogene of maturase K;(source:Araport11)
AT1G24460.1	protein_coding		Encodes a novel protein that co-immunoprecipitates with SYP41.  It is involved in vacuolar trafficking and salt tolerance, potentially via a role in vesicle fusion and in maintaining TGN structure or identity. Mutants display delayed formation of the Brefeldin A (BFA) compartment in cotyledons upon application of BFA.	TGN-related, localized SYP41 interacting protein;(source:Araport11)
AT1G24625.1	protein_coding	zinc finger protein 7	Encodes a zinc finger protein containing only a single zinc finger.	zinc finger protein 7;(source:Araport11)
AT1G64035.1	pseudogene			pseudogene of serpin 2;(source:Araport11)
AT1G45760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.6e-37 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G45545.1	protein_coding	Plant protein of unknown function (DUF827)		WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827);(source:Araport11)
AT1G46408.1	protein_coding	AGAMOUS-like 97		AGAMOUS-like 97;(source:Araport11)
AT1G45616.1	protein_coding	receptor like protein 6		receptor like protein 6;(source:Araport11)
AT1G46480.1	protein_coding	WUSCHEL related homeobox 4	Encodes WOX4, a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. This protein also contains an acidic domain approximately 10 residues upstream of the WUS box. Part of the TDIF-TDR-WOX4 signaling pathway that plays a crucial role in the maintenance of the vascular meristem organization during secondary growth. WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation.	WUSCHEL related homeobox 4;(source:Araport11)
AT1G56605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G45832.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.3e-80 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G46552.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.6e-184 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G46120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.6e-32 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G46912.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G46336.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G28323.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.9e-140 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT1G28465.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G28455.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G45120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.5e-294 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G66710.1	pseudogene			pseudogene of S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G41890.1	pseudogene			pseudogene of proline transporter 2;(source:Araport11)
AT1G45140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.4e-37 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G41850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.3e-29 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G41835.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.5e-96 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT1G41893.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.7e-104 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT1G41896.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.8e-192 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT1G36530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-81 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G36490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G36570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, blastp match of 46%25 identity and 2.5e-78 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT1G36520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.4e-307 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G36500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, blastp match of 41%25 identity and 8.7e-93 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT1G24996.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G24807.1	protein_coding	Glutamine amidotransferase type 1 family protein		Glutamine amidotransferase type 1 family protein;(source:Araport11)
AT1G24706.1	protein_coding	THO2	Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	THO2;(source:Araport11)
AT1G25097.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G25054.1	protein_coding	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein		UDP-3-O-acyl N-acetylglycosamine deacetylase family protein;(source:Araport11)
AT1G24764.1	protein_coding	microtubule-associated proteins 70-2	Member of the MAP70 protein family.	microtubule-associated proteins 70-2;(source:Araport11)
AT1G24967.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.2e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G36450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 2.2e-71 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT1G36540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.7e-301 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G37100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.2e-203 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G37090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-88 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G37120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 8.3e-14 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT1G24822.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G25083.1	protein_coding	Glutamine amidotransferase type 1 family protein		Glutamine amidotransferase type 1 family protein;(source:Araport11)
AT1G42365.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.0e-234 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G36400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to hypothetical protein GB:AAD48962 from (Arabidopsis thaliana);(source:TAIR10)
AT1G36403.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-13 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G29075.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to mutator-like transposase GB:AAC97243 GI:4038062 from (Arabidopsis thaliana);(source:TAIR10)
AT1G38430.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.8e-109 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G36360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.4e-39 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT1G36406.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.1e-26 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G36420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0.00011 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G36305.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G36330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.1e-71 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G38340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.7e-36 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.5e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G46984.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G46048.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT1G46192.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 7.4e-69 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G34405.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.8e-111 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G50860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.8e-152 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT1G50810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.6e-216 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G60520.1	pseudogene			pseudogene of Dynamin related protein 4A;(source:Araport11)
AT1G60510.1	pseudogene			pseudogene of Dynamin related protein 4C;(source:Araport11)
AT1G45976.1	protein_coding	S-ribonuclease binding protein 1		S-ribonuclease binding protein 1;(source:Araport11)
AT1G45904.1	pseudogene			pseudogene of photosystem II reaction center protein G;(source:Araport11)
AT1G46840.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G46624.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.3e-213 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT1G47128.1	protein_coding	Granulin repeat cysteine protease family protein	cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21).  Has been shown to have peptide ligase activity and protease activity in vitro.  RD21 is involved in immunity to the necrotrophic fungal pathogen Botrytis cinerea.Activity detected in root, leaf, flower and cell culture.	Granulin repeat cysteine protease family protein;(source:Araport11)
AT1G60480.1	pseudogene			pseudogene of ADP-ribosylation factor A1E;(source:Araport11)
AT1G42605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.9e-318 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G42695.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.1e-74 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G42697.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.5e-82 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT1G42620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, replication protein A1;(source:TAIR10)
AT1G45688.1	protein_coding		CC1 is a plant specific gene that interacts with  with the cellulose synthase complex and microtubules. It appears to play a role in localizing CESA to the membrane, microtuble dynamics , particularly during salt stress.	transmembrane protein;(source:Araport11)
AT1G46768.1	protein_coding	related to AP2 1	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.	related to AP2 1;(source:Araport11)
AT1G46696.1	protein_coding	Protein of unknown function, DUF601		hypothetical protein (Protein of unknown function, DUF601);(source:Araport11)
AT1G43070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.7e-18 P-value blast match to aF14G16 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT1G43050.1	pseudogene			pseudogene of Pectin lyase-like superfamily protein;(source:Araport11)
AT1G42595.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.7e-75 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G42600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.7e-54 P-value blast match to Q9S9W4 /247-408 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G40230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT1G52210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.7e-186 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G32890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-37 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT1G50130.1	pseudogene			pseudogene of ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase;(source:Araport11)
AT1G43725.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-107 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT1G43675.1	transposable_element_gene	transposable element gene	similarity to non-LTR retroelement protein	transposable_element_gene;(source:Araport11);expressed protein;(source:TAIR10)
AT1G77405.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G32110.1	pseudogene			pseudogene of DNA-directed RNA polymerase family protein;(source:Araport11)
AT1G41600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.8e-281 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G41740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.8e-119 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT1G41700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), pseudogene, has a 8.4e-127 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT1G41730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-253 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G41660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.3e-281 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G78350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 9.0e-42 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G78330.1	pseudogene			pseudogene of Trimeric LpxA-like enzymes superfamily protein;(source:Araport11)
AT1G28327.1	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT1G25112.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G41710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-247 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G41720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G24735.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G24909.1	protein_coding	Glutamine amidotransferase type 1 family protein		Glutamine amidotransferase type 1 family protein;(source:Araport11)
AT1G24793.1	protein_coding	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein		UDP-3-O-acyl N-acetylglycosamine deacetylase family protein;(source:Araport11)
AT1G25025.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G24851.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G43444.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.2e-242 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G43575.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.1e-34 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT1G43502.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.1e-158 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G35115.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-168 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G35130.1	transposable_element_gene	transposable element gene		gypsy-like retrotransposon family (Athila), has a 2.1e-28 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G52085.1	pseudogene			pseudogene of Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G65485.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to SAE1-S9-protein, blastp match of 45%25 identity and 1.4e-12 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa};(source:TAIR10)
AT1G65585.1	pseudogene			pseudogene of Ribonuclease H-like superfamily protein;(source:Araport11)
AT1G35186.1	transposable_element_gene	transposable element gene	similarity to non-LTR retroelement protein	transposable_element_gene;(source:Araport11);pseudogene, expressed protein;(source:TAIR10)
AT1G35183.1	protein_coding			zinc finger, C3HC4 type (RING finger) protein;(source:Araport11)
AT1G35146.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.9e-33 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G35143.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT1G52950.1);(source:TAIR10)
AT1G35120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G36105.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.7e-33 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT1G36095.1	protein_coding	DNA binding		DNA binding protein;(source:Araport11)
AT1G36140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G31814.1	protein_coding	FRIGIDA like 2	family member of FRI-related genes that is  required for the winter-annual habit. Genbank accession BK004885	FRIGIDA like 2;(source:Araport11)
AT1G31812.1	protein_coding	acyl-CoA-binding protein 6	Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases.	acyl-CoA-binding protein 6;(source:Araport11)
AT1G36775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-38 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G47405.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to SAE1-S9-protein, similar to putative non-LTR retroelement reverse transcriptase GB:AAC63678 (Arabidopsis thaliana) from (;(source:TAIR10)
AT1G31885.1	protein_coding	NOD26-like intrinsic protein 3;1		NOD26-like intrinsic protein 3;(source:Araport11)
AT1G31900.1	pseudogene			pseudogene of FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT1G31817.1	protein_coding	Ribosomal L18p/L5e family protein		Ribosomal L18p/L5e family protein;(source:Araport11)
AT1G42390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.3e-62 P-value blast match to Q9SHM9 /139-265 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G29715.1	pseudogene			pseudogene of Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G62550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to non-LTR retroelement reverse transcriptase-like protein GI:9758853 from (Arabidopsis thaliana);(source:TAIR10)
AT1G30340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G30310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.6e-19 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G42375.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.3e-236 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G42703.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.5e-08 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT1G44045.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.8e-19 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G43995.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G22350.1);(source:TAIR10)
AT1G59359.1	protein_coding	Ribosomal protein S5 family protein		Ribosomal protein S5 family protein;(source:Araport11)
AT1G59171.1	protein_coding	Inositol-pentakisphosphate 2-kinase family protein		Inositol-pentakisphosphate 2-kinase family protein;(source:Araport11)
AT1G59218.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family	Similar to disease resistance proteins.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G59453.1	protein_coding	B-block binding subunit of TFIIIC		B-block-binding subunit of TFIIIC protein;(source:Araport11)
AT1G42520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 5.3e-69 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G43990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT1G43960.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT1G44040.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G40150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.7e-38 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G42530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.8e-23 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G42510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 4.8e-141 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT1G42490.1	pseudogene			pseudogene of glutamate dehydrogenase 2;(source:Araport11)
AT1G65385.1	pseudogene			pseudogene of serpin 3;(source:Araport11)
AT1G65365.1	pseudogene			pseudogene of WALL ASSOCIATED KINASE (WAK)-LIKE 10;(source:Araport11)
AT1G40310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein;(source:TAIR10)
AT1G40470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.9e-102 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G57565.1	protein_coding	SWI-SNF-related chromatin binding protein		SWI-SNF-related chromatin binding protein;(source:Araport11)
AT1G57740.1	pseudogene			pseudogene of cytochrome P450;(source:Araport11)
AT1G35270.1	pseudogene			pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G35360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.5e-38 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT1G73445.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.1e-06 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT1G81020.1	pseudogene			pseudogene of GRAM domain family protein;(source:Araport11)
AT1G40630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.7e-230 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G40390.1	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT1G43387.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.0e-254 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G78095.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.0e-45 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G06390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT1G44835.1	protein_coding	YbaK/aminoacyl-tRNA synthetase-associated domain		YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein;(source:Araport11)
AT1G21945.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.7e-243 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G08465.1	protein_coding	Plant-specific transcription factor YABBY family protein	Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organs	Plant-specific transcription factor YABBY family protein;(source:Araport11)
AT1G39590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-256 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G39670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.7e-56 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT1G39910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G20635.1	protein_coding	ATP binding;protein kinases;protein serine/threonine kinases		protein kinase and Mad3-BUB1-I domain-containing protein;(source:Araport11)
AT2G17265.1	protein_coding	homoserine kinase	Encodes a homoserine kinase (HSK) which produces O-phospho-L-homoserine (HserP), a compound at the branching point of methionine and threonine biosynthesis. HSK is found in the stromal fraction of chloroplasts. Mutation of this gene results in higher level of the amino acid homoserine and resistance to downy mildew pathogen Hyaloperonospora arabidopsidis.	homoserine kinase;(source:Araport11)
AT2G17300.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G17340.1	protein_coding	Uncharacterised conserved protein (UCP030210)		pantothenate kinase;(source:Araport11)
AT2G17380.1	protein_coding	associated protein 19	Encodes clathrin assembly protein AP19. The mRNA is cell-to-cell mobile.	associated protein 19;(source:Araport11)
AT1G39990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila);(source:TAIR10)
AT1G40070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.4e-78 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G39830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.2e-56 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G39750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.8e-35 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G11150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30%25 identity and 3.2e-59 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus};(source:TAIR10)
AT1G11265.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.4e-253 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT2G17270.1	protein_coding	phosphate transporter 3;3	Encodes a mitochondrial phosphate transporter. Modulates plant responses to salt stress.	phosphate transporter 3;(source:Araport11)
AT2G17310.1	protein_coding	F-box and associated interaction domains-containing protein	Encodes an F-Box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistance	F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G17350.1	protein_coding			beta-mannosyltransferase-like protein;(source:Araport11)
AT2G17390.1	protein_coding	ankyrin repeat-containing 2B	Highly homologous to AKR2A. Involved in chloroplast biogenesis. Double mutants of AKR2A and AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes. The mRNA is cell-to-cell mobile.	ankyrin repeat-containing 2B;(source:Araport11)
AT2G17280.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT2G17320.1	protein_coding	Uncharacterised conserved protein (UCP030210)		pantothenate kinase;(source:Araport11)
AT1G06370.1	pseudogene			pseudogene of Alg9-like mannosyltransferase family;(source:Araport11)
AT1G47786.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G47816.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.5e-26 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G47765.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G47813.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G17440.1	protein_coding	plant intracellular ras group-related LRR 5	Encodes PIRL5, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. The mRNA is cell-to-cell mobile.	plant intracellular ras group-related LRR 5;(source:Araport11)
AT2G17330.1	pseudogene		putative obtusifoliol 14-alpha demethylase. Expressed pseudogene.	pseudogene of CYTOCHROME P450 51G1;(source:Araport11)
AT2G17420.1	protein_coding	NADPH-dependent thioredoxin reductase A	NADPH-dependent thioredoxin reductase, major cytosolic isoform The mRNA is cell-to-cell mobile.	NADPH-dependent thioredoxin reductase A;(source:Araport11)
AT2G17430.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. Controls pollen tube reception in synergids. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO7 belongs to the clade III, with AtMLO5, AtMLO8, AtMLO9, and AtMLO10. The gene is expressed in vegetative organs (RT-PCR experiments)and in pollen grains, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT1G58983.1	protein_coding	Ribosomal protein S5 family protein		Ribosomal protein S5 family protein;(source:Araport11)
AT1G59312.1	protein_coding	Inositol-pentakisphosphate 2-kinase family protein		Inositol-pentakisphosphate 2-kinase family protein;(source:Araport11)
AT2G17360.1	protein_coding	Ribosomal protein S4 (RPS4A) family protein		Ribosomal protein S4 (RPS4A) family protein;(source:Araport11)
AT2G17260.1	protein_coding	glutamate receptor 2	Encodes a glutamate receptor. Involved in calcium-programmed stomatal closure.	glutamate receptor 2;(source:Araport11)
AT2G17370.1	protein_coding	3-hydroxy-3-methylglutaryl-CoA reductase 2	Encodes a 3-hydroxy-3-methylglutaryl-CoA reductase (HMGR) that is involved in the synthesis of sterol and triterpenoid compounds.	3-hydroxy-3-methylglutaryl-CoA reductase 2;(source:Araport11)
AT2G17050.1	protein_coding	disease resistance protein (TIR-NBS-LRR class), putative		disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT2G17090.1	protein_coding	Protein kinase protein with tetratricopeptide repeat domain	Encodes a N-myrystolylated plasma membrane associated member of the RLCK II family of IRAK/Pelle-like kinases that regulates the  MAPK pathway that promotes the elongation of the Arabidopsis zygote and the development of its basal daughter cell into the extra-embryonic suspensor.  SSP transcripts are produced in mature pollen but are not translated until delivery to the zygote and the endosperm after fertilization, exerting a paternal effect on embryonic development.  The primary role of its kinase domain may lie in protein binding rather than in catalysis as key residues of the active site are absent.	kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT1G59406.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G59265.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT1G59077.1	protein_coding			B-block-binding subunit of TFIIIC protein;(source:Araport11)
AT1G59030.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G58889.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT1G58936.1	protein_coding	Inositol-pentakisphosphate 2-kinase family protein		Inositol-pentakisphosphate 2-kinase family protein;(source:Araport11)
AT1G59124.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G55470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative non-LTR retroelement reverse transcriptase, blastp match of 31%25 identity and 3.4e-27 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G17060.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G17020.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT2G17110.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632);(source:Araport11)
AT2G17860.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT2G17870.1	protein_coding	cold shock domain protein 3	Encodes COLD SHOCK DOMAIN PROTEIN 3 (CSP3), involved in the acquisition of freezing tolerance.	cold shock domain protein 3;(source:Araport11)
AT1G02335.1	protein_coding	germin-like protein subfamily 2 member 2 precursor	Encodes a plasodesmata-located protein involved in regulating primary root growth by controlling phloem-mediated allocation of resources between the primary and lateral root meristems.	germin-like protein subfamily 2 member 2 precursor;(source:Araport11)
AT1G47930.1	pseudogene			pseudogene of Glutamyl/glutaminyl-tRNA synthetase;(source:Araport11)
AT1G08065.1	protein_coding	alpha carbonic anhydrase 5		alpha carbonic anhydrase 5;(source:Araport11)
AT1G08105.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.0e-298 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G17920.1	protein_coding	nucleic acid binding;zinc ion binding		nucleic acid binding / zinc ion binding protein;(source:Araport11)
AT2G17880.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G17890.1	protein_coding	calcium-dependent protein kinase 16	Encodes a member of Calcium Dependent Protein Kinase. Protein is N-myristoylated. Localizes to the plasma membrane. Localizes to the chloroplast when the myristoylation motif is mutated.	calcium-dependent protein kinase 16;(source:Araport11)
AT2G17900.1	protein_coding	SET domain group 37	Homology Subgroup S-ET - Protein containing an interrupted SET domain.	SET domain group 37;(source:Araport11)
AT2G17820.1	protein_coding	histidine kinase 1	Encodes a member of the histidine kinase family.	histidine kinase 1;(source:Araport11)
AT1G55060.1	protein_coding	ubiquitin 12	Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product	ubiquitin 12;(source:Araport11)
AT1G55100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, putative ATP synthase beta subunit;(source:TAIR10)
AT1G44140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G17830.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G17910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.8e-42 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT2G20616.1	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT2G20613.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT2G20625.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT2G17660.1	protein_coding	RPM1-interacting protein 4 (RIN4) family protein		RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT2G17710.1	protein_coding			Big1;(source:Araport11)
AT2G17670.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G17790.1	protein_coding	VPS35 homolog A	Encodes a protein with similarity to yeast VPS35 which encodes a component of the retromer involved in retrograde endosomal transport. Mutants partially suppress the loss of VTI11 function in Arabidopsis and restores gravitropism in the double mutant. The mRNA is cell-to-cell mobile.	vacuolar protein sorting-associated 35A-like protein;(source:Araport11)
AT2G17750.1	protein_coding	NEP-interacting protein 1	Intrinsic thylakoid membrane  protein that fixes RPOTmp on the stromal side of the thylakoid  membrane.	NEP-interacting protein 1;(source:Araport11)
AT2G17720.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Encodes a prolyl 4-hydroxylase that modifies the extensin proteins in root hair cells.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G04025.1	protein_coding		Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor;(source:Araport11)
AT2G17680.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		DUF241 domain protein, putative (DUF241);(source:Araport11)
AT2G17800.1	protein_coding	Arabidopsis RAC-like 1	A member of ROP GTPase family. Rac-like GTP-binding protein ARAC1/ATGP2. Encodes a geranylgeranylated GTP binding protein. Involved in the auxin-activated 26S proteasome-dependent Aux/IAA proteolysis pathway.	RAC-like 1;(source:Araport11)
AT2G17760.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT2G07712.1	pseudogene			pseudogene of Intron maturase;(source:Araport11)
AT2G07692.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G04063.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT2G04038.1	protein_coding	basic leucine-zipper 48		basic leucine-zipper 48;(source:Araport11)
AT2G04036.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.6e-169 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G04039.1	protein_coding		NdhV is loosely associated with the NDH complex and is required for stabilizing NDH subcomplexes A and E.	DUF2996 family protein;(source:Araport11)
AT2G04066.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT2G07691.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07695.1	protein_coding	Cytochrome C oxidase subunit II-like, transmembrane domain		Cytochrome C oxidase subunit II-like, transmembrane domain-containing protein;(source:Araport11)
AT2G07709.1	pseudogene			pseudogene of NADH dehydrogenase subunit 7;(source:Araport11)
AT2G07698.1	protein_coding	ATPase, F1 complex, alpha subunit protein		ATPase, F1 complex, alpha subunit protein;(source:Araport11)
AT2G07713.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07711.1	pseudogene			pseudogene of NADH dehydrogenase 5B;(source:Araport11)
AT2G20835.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G20825.1	protein_coding	Developmental regulator, ULTRAPETALA		Developmental regulator, ULTRAPETALA;(source:Araport11)
AT2G20725.1	protein_coding	CAAX amino terminal protease family protein		CAAX amino terminal protease family protein;(source:Araport11)
AT2G20805.1	protein_coding			DNA-binding storekeeper protein transcriptional regulator-like protein;(source:Araport11)
AT2G17410.1	protein_coding	ARID/BRIGHT DNA-binding domain-containing protein	AT Rich domain protein.	ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT2G07699.1	pseudogene			pseudogene of ATPase subunit 6-1;(source:Araport11)
AT2G07715.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G07706.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07701.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07716.1	pseudogene			pseudogene of Sec-independent periplasmic protein translocase;(source:Araport11)
AT2G07688.1	pseudogene			pseudogene of photosystem II reaction center protein A;(source:Araport11)
AT2G17290.1	protein_coding	Calcium-dependent protein kinase family protein	Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family.  CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites.  CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses.  CPK6 is expressed in both guard cells and mesophyll cells.  Functions in guard cell ion channel regulation.   ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells.  Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles.  The protein kinase CPK6 is shown in biochemical assays to be directly activated by elevations in calcium concentrations in the physiological range (Laanements et al., 2013 PlantPhys.; PMID: 23766366). These data correlate with the in vivo function of CPK6 in Ca2+ and ABA activation of S-type anion channels (Mori et al., 2006 PLoS Biol.;  PMID: 17032064) and the ability of CPK6 to mediate ABA activation of SLAC1 (Brandt et al., 2012 PNAS; PMID: 22689970). The mRNA is cell-to-cell mobile.	Calcium-dependent protein kinase family protein;(source:Araport11)
AT2G17030.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)	Encodes a SKP1/ASK-interacting protein.	F-box SKIP23-like protein (DUF295);(source:Araport11)
AT2G17070.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		hypothetical protein (DUF241);(source:Araport11)
AT2G17115.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-251 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G17000.1	protein_coding	Mechanosensitive ion channel family protein		Mechanosensitive ion channel family protein;(source:Araport11)
AT2G07704.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.8e-50 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G07702.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07717.1	pseudogene			pseudogene of NADH dehydrogenase subunit 4;(source:Araport11)
AT2G07703.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.2e-10 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT2G07718.1	protein_coding	Cytochrome b/b6 protein		Cytochrome b/b6 protein;(source:Araport11)
AT2G17040.1	protein_coding	NAC domain containing protein 36	Member of the NAC transcription factor family and more specifically, the ONAC022 subfamily. Involved in leaf and inflorescence stem morphogenesis. The mRNA is cell-to-cell mobile.	NAC domain containing protein 36;(source:Araport11)
AT2G17080.1	protein_coding	Arabidopsis protein of unknown function (DUF241)		hypothetical protein (DUF241);(source:Araport11)
AT2G17120.1	protein_coding	lysm domain GPI-anchored protein 2 precursor	Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant. It contains a C-terminal GPI anchor signal and is an ortholog of OsCEBiP.	lysm domain GPI-anchored protein 2 precursor;(source:Araport11)
AT2G17010.1	protein_coding	Mechanosensitive ion channel family protein	MSL8 encodes a protein with similarity to mechano-sensitive channel proteins. MSL8 is expressed specifically in pollen and germinating pollen tubes.It regulates pollen germination and is needed to maintain cellular integrity during pollen hydration and germination.	Mechanosensitive ion channel family protein;(source:Araport11)
AT2G17130.1	protein_coding	isocitrate dehydrogenase subunit 2	Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.	isocitrate dehydrogenase subunit 2;(source:Araport11)
AT2G07689.1	protein_coding	NADH-Ubiquinone/plastoquinone (complex I) protein		NADH-Ubiquinone/plastoquinone (complex I) protein;(source:Araport11)
AT2G07697.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.9e-23 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G07707.1	protein_coding	Plant mitochondrial ATPase, F0 complex, subunit 8 protein		Plant mitochondrial ATPase, F0 complex, subunit 8 protein;(source:Araport11)
AT2G07721.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G25975.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.1e-14 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster);(source:TAIR10)
AT2G17140.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G04625.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to reverse transcriptase;(source:TAIR10)
AT2G31035.1	protein_coding			oxysterol-binding-like protein;(source:Araport11)
AT2G28755.1	protein_coding	UDP-D-glucuronate carboxy-lyase-related		UDP-D-glucuronate carboxy-lyase-like protein;(source:Araport11)
AT3G11300.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G30802.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.3e-311 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G10575.1	pseudogene			pseudogene of 3-phosphoinositide-dependent protein kinase;(source:Araport11)
AT3G24005.1	pseudogene			pseudogene of heat shock protein 60;(source:Araport11)
AT2G12195.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.1e-45 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G23955.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G22620.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G22555.1	pseudogene			pseudogene of putative DNA methyltransferase;(source:Araport11)
AT3G06895.1	protein_coding			syntaxin KNOLLE-like protein;(source:Araport11)
AT3G02065.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G17850.1	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein		Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT2G17840.1	protein_coding	Senescence/dehydration-associated protein-related	Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.	Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT2G17730.1	protein_coding	NEP-interacting protein 2	Intrinsic thylakoid membrane  protein that fixes RPOTmp on the stromal side of the thylakoid  membrane.	NEP-interacting protein 2;(source:Araport11)
AT2G17770.1	protein_coding	basic region/leucine zipper motif 27	Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT.	basic region/leucine zipper motif 27;(source:Araport11)
AT3G32415.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.1e-225 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G32445.1	pseudogene			pseudogene of 2-isopropylmalate synthase 1;(source:Araport11)
AT3G32377.1	pseudogene			pseudogene of Reticulon family protein;(source:Araport11)
AT3G32397.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.1e-81 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G32405.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G17690.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)	Encodes an F-box domain containing protein that is regulated by  non-CG DNA methylation. In drm1 drm2 cmt3 triple mutant background SDC expression is no longer suppressed and plants display abnormal development including curled leaves and reduced stature. A maternally expressed imprinted gene.	ascorbic acid mannose pathway regulator, putative (DUF295);(source:Araport11)
AT2G17700.1	protein_coding	ACT-like protein tyrosine kinase family protein		ACT-like protein tyrosine kinase family protein;(source:Araport11)
AT2G17740.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein	VACUOLELESS GAMETOPHYTES (VLG) as a DC1 domain containing protein that is found in the  endomembrane system. It is  essential for both female and male gametophyte development.	Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G17780.1	protein_coding	PLAC8 family protein	Encodes a mechanosensitive channel candidate MCA2. The three-dimensional structure of MCA2 was reconstructed and appears to comprise a small transmembrane region and large cytoplasmic region.	PLAC8 family protein;(source:Araport11)
AT3G32475.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G32677.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.7e-40 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G32435.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase GI:4335720 from (Arabidopsis thaliana);(source:TAIR10)
AT3G32389.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G32425.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.5e-44 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G07687.1	protein_coding	Cytochrome c oxidase, subunit III		Cytochrome c oxidase, subunit III;(source:Araport11)
AT2G07686.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.3e-28 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii);(source:TAIR10)
AT3G32375.1	pseudogene			pseudogene of casein lytic proteinase B4;(source:Araport11)
AT3G32395.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative transposon protein GI:7267531 from (Arabidopsis thaliana);(source:TAIR10)
AT3G26483.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.4e-252 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT3G26486.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G03855.1	pseudogene		Annotated as pseudogene of disease resistance protein.Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167 .	pseudogene of Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT3G34299.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-40 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G35707.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G37820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-185 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G07674.1	protein_coding	Unknown conserved protein		transmembrane protein;(source:Araport11)
AT2G07685.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.2e-13 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G07693.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.2e-16 P-value blast match to GB:CAA37924 orf 2 (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G38525.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G39935.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.6e-31 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G41345.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.6e-18 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G40640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 36%25 identity and 8.9e-19 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus};(source:TAIR10)
AT3G39230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.1e-251 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT3G36411.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.6e-09 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G30713.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.0e-08 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30709.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.4e-19 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30715.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);expressed protein;(source:TAIR10)
AT2G07696.1	protein_coding	Ribosomal protein S7p/S5e family protein		Ribosomal protein S7p/S5e family protein;(source:Araport11)
AT2G07719.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT2G07708.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07705.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07694.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.1e-50 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G07714.1	protein_coding	transcription factor-related		transcription factor-like protein;(source:Araport11)
AT3G30719.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 5.1e-49 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT3G30716.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.9e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30721.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 6.7e-134 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT3G20705.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G09385.1	pseudogene			pseudogene of Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G40955.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G09375.1	pseudogene			pseudogene of eukaryotic initiation factor 4A-III;(source:Araport11)
AT3G22945.1	pseudogene			pseudogene of rotamase CYP 3;(source:Araport11)
AT3G22955.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to orf315,  blastp match of 48%25 identity and 2.0e-08 P-value to GP|9049281|dbj|BAA99291.1||AP000396 orf315 {Beta vulgaris};(source:TAIR10)
AT3G32195.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.8e-102 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G32295.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.9e-207 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT3G32305.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT3G32223.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.8e-124 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT3G32205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.3e-22 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G32176.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.8e-16 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT2G07727.1	protein_coding	Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal		cytochrome b;(source:Araport11)
AT2G07731.1	pseudogene			pseudogene of NADH dehydrogenase 6;(source:Araport11)
AT2G07728.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07729.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.4e-67 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G07741.1	protein_coding	ATPase, F0 complex, subunit A protein		ATPase, F0 complex, subunit A protein;(source:Araport11)
AT3G32226.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 5.2e-146 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT3G32275.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G04715.1	pseudogene		Based on qRT-PCR data, this annotated pseudogene is expressed and upregulated in response to infection with the yellow strain of Cucumber mosaic virus in C24 and Col-0. Exhibited higher levels of H3K27me3; H3K27me3 was significantly decreased (fourfold) in response to infection with CMV(Y).	pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT3G04717.1	pseudogene		Based on qRT-PCR data, this annotated pseudogene is expressed and upregulated in response to infection with the yellow strain of Cucumber mosaic virus in C24 and Col-0.	pseudogene of pathogenesis-related 4;(source:Araport11)
AT3G04605.1	transposable_element_gene		Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1), AT2G30640 (MUG2), AT1G06740 (MUG3), AT5G16505 (MUG4), AT3G06940 (MUG5), AT5G48965 (MUG6), AT3G05850 (MUG7) and AT5G34853 (MUG8).	transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.9e-64 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G07739.1	protein_coding	Ycf1 protein		Ycf1 protein;(source:Araport11)
AT2G07724.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07738.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07723.1	pseudogene			pseudogene of cytochrome C biogenesis 452;(source:Araport11)
AT2G07737.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase, blastp match of 43%25 identity and 2.8e-43 P-value to GP|13786450|gb|AAK39575.1|AC025296_10|AC025296 putative reverse transcriptase {Oryza sativa};(source:TAIR10)
AT2G07736.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.9e-29 P-value blast match to GB:CAA37924 orf 2 (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G09915.1	pseudogene			pseudogene of Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G31935.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.3e-157 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G30814.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.7e-109 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT3G30813.1	pseudogene			pseudogene of lysyl-tRNA synthetase 1;(source:Araport11)
AT2G07735.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.8e-21 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G07734.1	protein_coding	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein		Alpha-L RNA-binding motif/Ribosomal protein S4 family protein;(source:Araport11)
AT2G07650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.8e-41 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT2G10605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase,  blastp match of 27%25 identity and 2.7e-06 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G28605.1	protein_coding	Photosystem II reaction center PsbP family protein	Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lumenal side).	Photosystem II reaction center PsbP family protein;(source:Araport11)
AT3G19045.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G18955.1	pseudogene			pseudogene of transmembrane epididymal protein (DUF716);(source:Araport11)
AT3G25815.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.7e-34 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G32383.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.7e-05 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G32393.1	transposable_element_gene	transposable element gene	pseudogene of Ulp1 protease family protein	transposable_element_gene;(source:Araport11);pseudogene, expressed protein;(source:TAIR10)
AT3G32385.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.7e-188 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G25725.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.3e-213 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT3G23145.1	protein_coding	zinc ion binding;isoleucine-tRNA ligases;ATP binding;aminoacyl-tRNA ligases;nucleotide binding		ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein;(source:Araport11)
AT3G27883.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.1e-23 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G27886.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to SAE1-S9-protein,  blastp match of 22%25 identity and 3.3e-08 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa};(source:TAIR10)
AT3G27895.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G30122.1	pseudogene		pseudogene similar to peptide chain release factor protein	pseudogene of Peptide chain release factor 2;(source:Araport11)
AT3G29792.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.7e-243 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT3G29787.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.8e-35 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G32387.1	pseudogene			pseudogene of casein lytic proteinase B3;(source:Araport11)
AT3G32455.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.5e-24 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G32373.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, similar to helicase GI:10177991 from (Arabidopsis thaliana);(source:TAIR10)
AT3G32391.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G32465.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 0.00075 P-value blast match to GB:AAA29366 ORF1 (LINE-element) (Anopheles gambiae);(source:TAIR10)
AT3G32092.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.1e-99 P-value blast match to F1M23-4 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT3G32118.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to GB:S66306 from (Arabidopsis thaliana) (Plant Mol. Biol. 29 (3), 441-452 (1995));(source:TAIR10)
AT3G32093.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Putative polyprotein, similar to GB:AAF07317 from (Simian immunodeficiency virus);(source:TAIR10)
AT3G32047.1	protein_coding	Cytochrome P450 superfamily protein		Cytochrome P450 superfamily protein;(source:Araport11)
AT3G32095.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G29798.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30%25 identity and 4.0e-08 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus};(source:TAIR10)
AT3G29805.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G29791.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G30703.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.1e-20 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G32043.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.2e-40 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G32135.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.4e-59 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G32112.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.8e-135 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G32115.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.7e-25 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G32116.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.9e-284 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30695.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-308 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30708.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.3e-90 P-value blast match to gb|AAL06420.1|AF378078_1 reverse transcriptase (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT3G30665.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G30668.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.6e-229 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G20935.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 28		cytochrome P450, family 705, subfamily A, polypeptide 28;(source:Araport11)
AT3G32164.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.6e-209 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G32091.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.3e-109 P-value blast match to F1M23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT3G32168.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.9e-94 P-value blast match to F1M23-3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT3G26295.1	pseudogene		putative cytochrome P450.	pseudogene of cytochrome P450;(source:Araport11)
AT3G30717.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.6e-176 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G26525.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G26614.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.0e-39 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G27785.1	protein_coding	myb domain protein 118	MYB118 encodes a myb transcription factor that represses endosperm maturation and, along with MYB115, regulates glucosinolate biosynthesis.	myb domain protein 118;(source:Araport11)
AT3G12915.1	protein_coding	Ribosomal protein S5/Elongation factor G/III/V family protein		Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT3G30748.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.8e-42 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G30722.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 4.1e-24 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT3G30718.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.7e-111 P-value blast match to F21A17 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT3G30711.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.9e-123 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT3G30712.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G30743.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 3.7e-94 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT3G30742.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative non-LTR retroelement reverse transcriptase, similar to GB:S65812 from (Arabidopsis thaliana);(source:TAIR10)
AT3G30744.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 8.2e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G30745.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.2e-26 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G30763.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains some similarity to pol polyprotein retrotransposons;(source:TAIR10)
AT3G05415.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.0e-48 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT3G30747.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT3G30764.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.4e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30746.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.6e-53 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G30765.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 4.6e-111 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT3G30749.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.4e-205 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G06437.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT3G06433.1	pseudogene		pseudogene of nodulin MtN3 family protein	pseudogene of hypothetical protein;(source:Araport11)
AT3G22232.1	pseudogene			pseudogene of ribulose-bisphosphate carboxylases;(source:Araport11)
AT3G22237.1	pseudogene			pseudogene of ribulose-bisphosphate carboxylases;(source:Araport11)
AT3G31945.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.5e-171 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT3G31955.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04210.1);(source:TAIR10)
AT3G32172.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.7e-53 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT3G30815.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.4e-34 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G22133.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase GB:AAC33226.1 from (Arabidopsis thaliana);(source:TAIR10)
AT3G22136.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase GB:AAD22368 from (Arabidopsis thaliana);(source:TAIR10)
AT3G17715.1	pseudogene		Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of S-adenosylmethionine decarboxylase proenzyme;(source:Araport11)
AT3G28855.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G28865.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.8e-16 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G30805.1	protein_coding	Class II aminoacyl-tRNA and biotin synthetases superfamily protein		Class II aminoacyl-tRNA and biotin synthetases superfamily protein;(source:Araport11)
AT3G30819.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.0e-78 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30834.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-90 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G30821.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-81 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30836.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 7.5e-125 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT3G28915.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.3e-24 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G28153.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.3e-30 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G28005.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G14515.1	pseudogene			pseudogene of Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G30817.1	pseudogene			pseudogene of lysyl-tRNA synthetase 1;(source:Araport11)
AT3G30818.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.4e-94 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G30837.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.8e-261 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT3G30825.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.3e-219 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30835.1	pseudogene			pseudogene of lysyl-tRNA synthetase 1;(source:Araport11)
AT3G14517.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.0e-38 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G29648.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.5e-169 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT3G29725.1	pseudogene			pseudogene of HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G29727.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.9e-09 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT3G30811.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.2e-187 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G30831.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.0e-263 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G30812.1	pseudogene			pseudogene of lysyl-tRNA synthetase 1;(source:Araport11)
AT3G30832.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.7e-138 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G30833.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.7e-188 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G29796.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G29970.1	protein_coding	B12D protein		B12D protein;(source:Araport11)
AT3G27327.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.7e-320 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G24982.1	protein_coding	receptor like protein 40		receptor like protein 40;(source:Araport11)
AT3G28945.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.5e-29 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G29755.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.5e-180 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G26165.1	pseudogene		putative cytochrome P450.	pseudogene of cytochrome P450;(source:Araport11)
AT3G26265.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.1e-76 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G29618.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.5e-16 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G29595.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.4e-63 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G28955.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains similarity to many putative replication proteins, A1;(source:TAIR10)
AT3G29032.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa);(source:TAIR10)
AT3G24927.1	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT3G29632.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29640.1);(source:TAIR10)
AT3G29612.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G29634.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.3e-159 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT3G29615.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.2e-313 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G29578.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.1e-48 P-value blast match to GB:CAA37924 orf 2 (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G25826.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.1e-27 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G20087.1	pseudogene		a cytochrome P450 pseudogene	pseudogene of cytochrome P450;(source:Araport11)
AT3G20075.1	pseudogene		a pseudogene with cytochrome P450 domain	pseudogene of cytochrome P450;(source:Araport11)
AT3G20083.1	pseudogene			pseudogene of cytochrome P450;(source:Araport11)
AT3G20085.1	transposable_element_gene	transposable element gene	similarity to Retrotransposon - like protein (Copia-like retroelement pol polyprotein-like).	transposable_element_gene;(source:Araport11);pseudogene, expressed protein;(source:TAIR10)
AT3G29577.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.0e-133 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G29365.1	pseudogene		member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	pseudogene of expansin A24;(source:Araport11)
AT3G29175.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.8e-22 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G30405.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.1e-154 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G30411.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G17203.1	pseudogene		a pseudogene initially named GA2ox5 and thought to be a member of the gibberellin 2-oxidase enzyme family. It was later shown to have a large DNA insert in the putative gene model.	pseudogene of gibberellin 2-oxidase 4;(source:Araport11)
AT3G26805.1	pseudogene			pseudogene of Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G30685.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Hypothetical protein with similarity to putative Ac-like transposases, similar to Ac-like transposase GB:AAD25149 from (Arabidopsis thaliana);(source:TAIR10)
AT3G30663.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.0e-44 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G30393.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 7.1e-144 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT3G30415.1	pseudogene			pseudogene of urophorphyrin methylase 1;(source:Araport11)
AT3G30413.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.9e-221 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G30418.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.5e-204 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30416.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G30767.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 8.3e-46 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G30218.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 8.1e-82 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G30211.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.5e-83 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G30212.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.6e-19 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G30219.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.7e-200 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G30213.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.2e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30214.1	pseudogene			pseudogene of transmembrane protein;(source:Araport11)
AT3G30216.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains some similarity to polyproteins;(source:TAIR10)
AT3G30852.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative non-LTR retroelement reverse transcriptase, blastp match of 22%25 identity and 7.8e-07 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G30847.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT3G30846.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.0e-303 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G30844.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.6e-95 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT3G30838.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.2e-163 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G30867.1	pseudogene			pseudogene of EAP30/Vps36 family protein;(source:Araport11)
AT3G30842.1	protein_coding	pleiotropic drug resistance 10		pleiotropic drug resistance 10;(source:Araport11)
AT3G30885.1	pseudogene			pseudogene of Glucose-6-phosphate/phosphate translocator-like protein;(source:Araport11)
AT3G30841.1	protein_coding	Cofactor-independent phosphoglycerate mutase		Cofactor-independent phosphoglycerate mutase;(source:Araport11)
AT3G30859.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.6e-42 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G30875.1	pseudogene		Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of ABC transporter family protein;(source:Araport11)
AT3G25225.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G29732.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 9.9e-152 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT3G29695.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.8e-82 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G29762.1	pseudogene			pseudogene of DNA-directed RNA polymerase family protein;(source:Araport11)
AT3G29734.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 6.5e-179 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT3G29736.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 7.4e-29 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT3G29738.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G29766.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative transposable element, similar to transposase (Tip100) GB:BAA36225 (Ipomoea purpurea);(source:TAIR10)
AT3G27095.1	pseudogene			pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G27025.1	protein_coding		Encodes a member of the LAZY gene family that is expressed in the shoot apex.	hypothetical protein;(source:Araport11)
AT3G15602.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 9.9e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G30585.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.8e-33 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G26932.1	protein_coding	dsRNA-binding protein 3		dsRNA-binding protein 3;(source:Araport11)
AT3G18145.1	pseudogene			pseudogene of carbamoyl phosphate synthetase A;(source:Araport11)
AT3G24675.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.4e-31 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G30455.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.6e-79 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G30465.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G30505.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.4e-49 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G30433.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-80 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G30436.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.0e-72 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G18773.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G18777.1	pseudogene			pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT3G29572.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G30396.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.1e-39 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G15935.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G22053.1	protein_coding			cysteine-rich repeat secretory protein;(source:Araport11)
AT3G22057.1	protein_coding			cysteine-rich repeat secretory protein;(source:Araport11)
AT3G21933.1	pseudogene			pseudogene of cysteine-rich receptor-like kinase;(source:Araport11)
AT3G21937.1	pseudogene			pseudogene of Receptor-like protein kinase-related family protein;(source:Araport11)
AT3G25495.1	pseudogene		pseudogene of leucine-rich repeat protein	pseudogene of gamma-irradiation and mitomycin c induced 1;(source:Araport11)
AT3G23085.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-91 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G29078.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.3e-30 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G29153.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.3e-238 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT3G29105.1	pseudogene			pseudogene of Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G29515.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.6e-11 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G29525.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.0e-22 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G29643.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase,  blastp match of 40%25 identity and 6.6e-123 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G29647.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G29641.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-84 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G29156.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.9e-175 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G29076.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.1e-318 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G29205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-28 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G29255.1	protein_coding	catalytics;intramolecular transferases		Putative pentacyclic triterpene synthase 7;(source:Araport11)
AT3G29187.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.2e-08 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G29642.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.7e-20 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G33154.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.5e-36 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii);(source:TAIR10)
AT3G33178.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.1e-194 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G33157.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33181.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.3e-216 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G23725.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.2e-164 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT3G09165.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 6.7e-75 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G28315.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-224 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G28300.1	protein_coding	Protein of unknown function (DUF677)	Possesses a transmembrane domain and a small region that has sequence similarities to integrins from fungi, insects and humans. Is localized to plasma membrane and cytoplasm.	transmembrane protein, putative (DUF677);(source:Araport11)
AT3G28295.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.4e-29 P-value blast match to aF23C08 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT3G33160.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-61 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G33185.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 6.6e-87 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT3G33163.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33189.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33166.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.2e-29 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G28705.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.8e-25 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G21965.1	pseudogene			pseudogene of Receptor-like protein kinase-related family protein;(source:Araport11)
AT3G21945.1	protein_coding	Receptor-like protein kinase-related family protein		cysteine-rich repeat secretory protein;(source:Araport11)
AT3G21985.1	pseudogene			pseudogene of cysteine-rich repeat secretory-like protein (DUF26);(source:Araport11)
AT3G33175.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33193.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.4e-232 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT3G33169.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.0e-140 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT3G33172.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.4e-244 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G08947.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G08885.1	pseudogene			pseudogene of ferretin 1;(source:Araport11)
AT3G33005.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.7e-73 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G32975.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.3e-133 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT3G33011.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT3G33006.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.0e-261 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G32970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33091.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33106.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33109.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33112.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.8e-100 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT3G33115.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.9e-169 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT3G33009.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33008.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G32968.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.2e-26 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G33004.1	pseudogene			pseudogene of DNA-directed RNA polymerase family protein;(source:Araport11)
AT3G33025.1	pseudogene			pseudogene of F-box protein (DUF295);(source:Araport11)
AT3G33100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33103.1	pseudogene			pseudogene of cytochrome c oxidase assembly protein CtaG / Cox11 family;(source:Araport11)
AT3G33097.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-210 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33094.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G31904.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, helicase, blastp match of 41%25 identity and 4.0e-264 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G33002.1	pseudogene			pseudogene of ribosomal protein S2;(source:Araport11)
AT3G33030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.8e-50 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT3G33000.1	pseudogene			pseudogene of ATPase;(source:Araport11)
AT3G33055.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G32966.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G31630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.6e-319 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G31720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.0e-12 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT3G31810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G31905.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G31903.1	pseudogene			pseudogene of AGAMOUS-like 28;(source:Araport11)
AT3G32964.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 2.7e-181 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT3G33035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 2.1e-204 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT3G32962.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.6e-49 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT3G33045.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.0e-66 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT3G08943.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G31906.1	pseudogene			pseudogene of casein lytic proteinase B4;(source:Araport11)
AT3G31908.1	pseudogene			pseudogene of Reticulon family protein;(source:Araport11)
AT3G31902.1	pseudogene			pseudogene of AGAMOUS-like 28;(source:Araport11)
AT3G30145.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, putative helicase protein, blastp match of 39%25 identity and 7.7e-124 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G31365.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, putative helicase, similar to putative helicase GB:AAD15468 GI:4263825 from (Arabidopsis thaliana);(source:TAIR10)
AT3G30147.1	pseudogene			pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT3G30183.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, putative Ser-Thr protein kinase protein, blastp match of 28%25 identity and 4.5e-08 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G30187.1	pseudogene			pseudogene of no-apical-meristem-associated carboxy-terminal domain protein;(source:Araport11)
AT3G12143.1	pseudogene			pseudogene of Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G31359.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.7e-77 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT3G31357.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein GB:AAD15359 from (Arabidopsis thaliana);(source:TAIR10)
AT3G31475.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative non-LTR retroelement reverse transcriptase, blastp match of 26%25 identity and 1.4e-10 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G31425.1	pseudogene			pseudogene of Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G44390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.1e-12 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT3G31023.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.0e-152 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT3G31373.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, putative replication protein, similar to putative replication protein GB:BAB02796 from (Arabidopsis thaliana);(source:TAIR10)
AT3G31358.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.8e-151 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G31375.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.1e-98 P-value blast match to T22B15 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT3G31356.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.8e-06 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G31377.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, putative replication protein A1, similar to putative replication protein A1 GB:AAD32756 GI:4895168 from (Arabidopsis thaliana);(source:TAIR10)
AT3G31161.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT3G29764.1	pseudogene			pseudogene of DNA-directed RNA polymerase family protein;(source:Araport11)
AT3G29767.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase,  blastp match of 35%25 identity and 7.4e-43 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus};(source:TAIR10)
AT3G29776.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-178 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT3G31355.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein GB:AAD25683 GI:6598522 from (Arabidopsis thaliana);(source:TAIR10)
AT3G31314.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.3e-23 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G31403.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 6.0e-61 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G31406.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29610.1);(source:TAIR10)
AT3G31395.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.3e-23 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G29768.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.4e-85 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT3G29777.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.6e-22 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G29771.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G29778.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 8.1e-43 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G29772.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to B1129H01.3,  blastp match of 51%25 identity and 1.2e-59 P-value to GP|20161194|dbj|BAB90121.1||AP003370 B1129H01.3 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G31374.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.1e-31 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G31317.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.9e-32 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G31312.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.1e-46 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT3G31367.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.1e-71 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi);(source:TAIR10)
AT3G29781.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 6.7e-83 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT3G29775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.8e-246 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G29773.1	pseudogene			pseudogene of nuclease;(source:Araport11)
AT3G29779.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to SAE1-S9-protein,  blastp match of 33%25 identity and 2.8e-14 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa};(source:TAIR10)
AT3G29769.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.5e-252 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G29774.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.6e-07 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G29783.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.3e-193 P-value blast match to gb|AAO73523.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G33124.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.5e-171 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.9e-256 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G33127.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33142.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.5e-203 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.5e-70 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G33225.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to hypothetical protein GB:AAD36941 (Arabidopsis thaliana);(source:TAIR10)
AT3G33575.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to hypothetical protein which contains similarity to T. cruzi 3 end fragment (PID:g161956) GB:AAB61080 (Arabidopsis thaliana);(source:TAIR10)
AT3G33235.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to hypothetical protein GB:AAD20105 (Arabidopsis thaliana);(source:TAIR10)
AT3G33585.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to hypothetical proteins: GB:AAD48951 (Arabidopsis thaliana), GB:AAC95166 (Arabidopsis thaliana), GB:AAD20106 (Arabidopsis thaliana) and replication factor A1: GB:AAD32756 (Arabidopsis thaliana);(source:TAIR10)
AT3G33133.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.6e-222 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33145.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.3e-33 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT3G33136.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-192 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33148.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.5e-165 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT3G33139.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.6e-40 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33377.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.0e-42 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G33595.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, similar to putative helicase GB:AAD20107 (Arabidopsis thaliana) and putative helicase GB:AAD32757 (Arabidopsis thaliana);(source:TAIR10)
AT3G33197.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.9e-130 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33537.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.8e-289 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33545.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative non-LTR retroelement reverse transcriptase, similar to reverse transcriptase - Arabidopsis thaliana retrotransposon Ta11-1. GB:S65812 (S65812);(source:TAIR10)
AT3G33118.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33121.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.0e-10 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G04445.1	pseudogene			pseudogene of polyribonucleotide nucleotidyltransferase;(source:Araport11)
AT3G30733.1	pseudogene			pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT3G33555.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to hypothetical protein GB:AAD26889 (Arabidopsis thaliana);(source:TAIR10)
AT3G33201.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.2e-137 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G33565.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.0e-22 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G33205.1	pseudogene			pseudogene of hypothetical protein (Protein of unknown function;(source:Araport11)
AT3G30335.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 2.2e-129 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT3G30737.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase,  blastp match of 48%25 identity and 0. P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G30724.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative GB:AAC67331 GI:3785984 non-LTR retroelement reverse transcriptase from (Arabidopsis thaliana);(source:TAIR10)
AT3G30727.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.6e-10 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G33215.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to unknown protein GB:AAD20653 (Arabidopsis thaliana) and similar to putative reverse transcriptase GB:AAD15474 (Arabidopsis thaliana);(source:TAIR10)
AT3G32917.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.0e-114 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G32894.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.6e-177 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G32895.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.6e-155 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT3G32912.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-75 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G32897.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G32914.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-42 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G32899.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.0e-240 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G32901.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.2e-81 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G32925.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.1e-13 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G32893.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G08505.1	protein_coding	zinc finger (CCCH-type/C3HC4-type RING finger) family protein		zinc finger (CCCH-type/C3HC4-type RING finger) family protein;(source:Araport11)
AT3G32898.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.0e-61 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G20620.1	protein_coding	Protein with domains of unknown function (DUF26 and DUF1204)		cysteine-rich repeat secretory-like protein (DUF26 and DUF1204);(source:Araport11)
AT4G20540.1	protein_coding	Protein with domains of unknown function (DUF26 and DUF1204)		cysteine-rich repeat secretory-like protein;(source:Araport11)
AT4G20630.1	protein_coding	Protein with domains of unknown function (DUF26 and DUF1204)		cysteine-rich repeat secretory-like protein (DUF26 and DUF1204);(source:Araport11)
AT4G20550.1	protein_coding	Protein with domains of unknown function (DUF26 and DUF1204)		cysteine-rich repeat secretory-like protein;(source:Araport11)
AT4G20640.1	protein_coding	Protein with domains of unknown function (DUF26 and DUF1204)		cysteine-rich repeat secretory-like protein (DUF26 and DUF1204);(source:Araport11)
AT3G32360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.8e-18 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT3G32313.1	pseudogene			pseudogene of AGAMOUS-like 28;(source:Araport11)
AT3G32316.1	pseudogene			pseudogene of AGAMOUS-like 28;(source:Araport11)
AT3G32371.1	pseudogene			pseudogene of AGAMOUS-like 28;(source:Araport11)
AT3G32035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.3e-16 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT3G32022.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, helicase,  blastp match of 37%25 identity and 5.2e-207 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G32024.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G32026.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G32028.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, replication protein A1;(source:TAIR10)
AT3G32029.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.2e-76 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT3G32031.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G20560.1	protein_coding	Protein with domains of unknown function (DUF26 and DUF1204)		cysteine-rich repeat secretory-like protein;(source:Araport11)
AT4G20650.1	protein_coding	receptor-like protein kinase-related		receptor-like kinase;(source:Araport11)
AT4G20570.1	protein_coding	Protein with domains of unknown function (DUF26 and DUF1204)		cysteine-rich repeat secretory-like protein;(source:Araport11)
AT4G20580.1	protein_coding	Protein with domains of unknown function (DUF26 and DUF1204)		cysteine-rich repeat secretory-like protein (DUF26 and DUF1204);(source:Araport11)
AT4G20590.1	protein_coding	Protein with domains of unknown function (DUF26 and DUF1204)		cysteine-rich repeat secretory-like protein (DUF26 and DUF1204);(source:Araport11)
AT4G20600.1	protein_coding	Protein with domains of unknown function (DUF26 and DUF1204)		cysteine-rich repeat secretory-like protein (DUF26 and DUF1204);(source:Araport11)
AT3G32032.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.1e-65 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT3G32021.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.8e-154 P-value blast match to GB:AAA66266 unknown protein ORF1 transposable element En-1 (CACTA-element) (Zea mays);(source:TAIR10)
AT3G01015.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family	MDP60 is a member of the TPX2 protein family. It co-localizes with microtubules and appears to function to destabilize them during light mediated hypocotyl growth.	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT4G34131.1	protein_coding	UDP-glucosyl transferase 73B3		UDP-glucosyl transferase 73B3;(source:Araport11)
AT4G18570.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G20610.1	protein_coding	Protein with domains of unknown function (DUF26 and DUF1204)		cysteine-rich repeat secretory-like protein (DUF26 and DUF1204);(source:Araport11)
AT4G16870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT4G14100.1	protein_coding	transferases, transferring glycosyl groups		transferases, transferring glycosyl groups;(source:Araport11)
AT4G01575.1	protein_coding	serine protease inhibitor, Kazal-type family protein	Encodes a putative Kazal-type serine proteinase inhibitor that is highly expressed in seeds, mature roots and flowers.	serine protease inhibitor, Kazal-type family protein;(source:Araport11)
AT4G11175.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT4G18375.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT5G03560.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G09310.1	protein_coding	SPla/RYanodine receptor (SPRY) domain-containing protein		SPla/RYanodine receptor (SPRY) domain-containing protein;(source:Araport11)
AT5G03500.1	protein_coding	Mediator complex, subunit Med7	Encodes together with its paralog MED7A a subunit of the middle module of the transcriptional co-regulator Mediator complex. Regulates genes required for normal development of etiolated seedlings.	Mediator complex, subunit Med7;(source:Araport11)
AT5G03340.1	protein_coding	ATPase, AAA-type, CDC48 protein		ATPase, AAA-type, CDC48 protein;(source:Araport11)
AT5G28380.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G03430.1	protein_coding	phosphoadenosine phosphosulfate (PAPS) reductase family protein		phosphoadenosine phosphosulfate (PAPS) reductase family protein;(source:Araport11)
AT5G03360.1	protein_coding	DC1 domain-containing protein		cysteine/histidine-rich C1 domain protein;(source:Araport11)
AT5G03530.1	protein_coding	RAB GTPase homolog C2A	Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.	RAB GTPase homolog C2A;(source:Araport11)
AT5G03460.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G36734.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36830.1);(source:TAIR10)
AT5G36732.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.2e-83 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G36670.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G11350.1	protein_coding	DNAse I-like superfamily protein	Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT5G26751.1	protein_coding	shaggy-related kinase 11	Encodes a SHAGGY-related kinase involved in meristem organization. It regulates the redox stress response by phosphorylating glucose-6-phosphate dehydrogenase 6.Functions as a positive regulator of salt stress tolerance. Phosphorylates and enhances G6PD6 (At5g40760) activity	shaggy-related kinase 11;(source:Araport11)
AT5G37475.1	protein_coding	Translation initiation factor eIF3 subunit		Translation initiation factor eIF3 subunit;(source:Araport11)
AT5G37445.1	pseudogene			pseudogene of hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G36820.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G36800.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G50565.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G50710.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G19850.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G34895.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1);(source:TAIR10)
AT5G13240.1	protein_coding	transcription regulators	Global repressor of RNA polymerase III (Pol III). Maf1 repressor activity is critical for plant survival during environmental stresses, and is regulated by its phosphorylation/dephosphorylation through the activity of TOR and PP4/PP2A phosphatases.	transcription regulator;(source:Araport11)
AT1G47783.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05145.1);(source:TAIR10)
AT5G50640.1	protein_coding	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein		CBS/octicosapeptide/phox/Bemp1 domain protein;(source:Araport11)
AT5G50660.1	protein_coding	Protein of unknown function (DUF 3339)		transmembrane protein, putative (DUF 3339);(source:Araport11)
AT5G50670.1	protein_coding	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein		Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein;(source:Araport11)
AT5G50680.1	protein_coding	SUMO activating enzyme 1B	Encodes a protein that is part of a heterodimeric SUMO E1 activating enzyme.	SUMO activating enzyme 1B;(source:Araport11)
AT5G50690.1	protein_coding	hydroxysteroid dehydrogenase 7	Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include:   At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463).  Two copies of HSD1 and HSD4 exist due to a gene duplication event.  In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.	hydroxysteroid dehydrogenase 7;(source:Araport11)
AT5G50700.1	protein_coding	hydroxysteroid dehydrogenase 1	Encodes a hydroxysteroid dehydrogenase HSD1.  Two copies of HSD1 (At5g50600 and At5g50700) exist in the Arabidopsis genome as a result of an exact 33-kb duplication on chromosome 5 encompassing seven genes.  There are five homologs of HSD1 in Arabidopsis (HSD2-At3g47350, HSD3-At3g47360, HSD4-At5g50590, HSD4-At5g50690 and HSD6-At5g50770; HSD4 has two copies due to the same gene duplication event occurred to HSD1) (Plant Cell Physiology 50:1463). At5g50690 is also named as HSD7 (Plant Physiology 145:87).  HSD1 is identified from the proteome of oil bodies from mature seeds.  Transcription of HSD1 is specifically and highly induced in oil-accumulating tissues of mature seeds; transcript disappears during germination.	hydroxysteroid dehydrogenase 1;(source:Araport11)
AT2G11550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT5G50650.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G36770.1	protein_coding	Protein of Unknown Function (DUF239)		Pol-like polyprotein/retrotransposon, putative (DUF239);(source:Araport11)
AT5G55890.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT1G67090.1	protein_coding	ribulose bisphosphate carboxylase small chain 1A	Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410). Functions to yield sufficient Rubisco content for leaf photosynthetic capacity.	ribulose bisphosphate carboxylase small chain 1A;(source:Araport11)
TAG1	protein_coding		putative transposase encoded by an autonomous transposable element. not found in Columbia	
S29-LIKE	protein_coding		ribosomal protein S29-like	
ABR	protein_coding		Activation Tagged Brassinazole Resistant	
ACT5	unknown			
ATEXT5	unknown		Encodes extensin 5.	
ATR3	unknown			
BOB	unknown			
BRP	unknown			
BRU	unknown			
CAX6	unknown			
CNBT2	unknown			
CYP705A29P	protein_coding		a member of the A-type cytochrome P450. the associated locus, AT3G20935 may need to be split to separate the pseudogene (CYP705A28) from this gene model.	
CYP705A31P	pseudogene		annotated as a pseudogene at PlaCe but the sequence seems to be a part of CYP705A30	
CYP71A17P	pseudogene		cytochrome P450 pseudogene	
CYP79B4P	pseudogene		a pseudogene with cytochrome P450 domain	
CYP79C4P	pseudogene		a pseudogene with cytochrome P450 domain, closely linked to CYP79C2 but not the same as this	
CYP79C5P	pseudogene		a pseudogene with cytochrome P450 domain, closely linked to CYP79C2 but not the same as this	
EIF4B5	unknown			
EXL	unknown			
FBI	unknown			
GEK	unknown			
MHX1	unknown			
MKP	unknown			
MON	unknown			
NHD2	unknown			
NOH	unknown			
POG	unknown			
RIP	unknown			
RNT	unknown			
ROC	unknown			
SEN	unknown			
SKA	unknown			
SNK	unknown			
SUF	unknown			
SUH	unknown			
SYP24	unknown			
AAR1	unknown		defective in regulating the expression of the ADH gene during seed germination.	
AAR2	unknown		allyl alcohol resistant (AAR) mutant affects anoxic and hypoxic induction of ADH and seed germination	
ACC3	unknown			
ACC4	unknown			
ACC5	unknown			
ACL4	unknown		acaulis 4, mutants have a severe defect in leaf expansion as well as in internode elongation.  The mutation is tightly linked to the marker SC5 on the lower arm of chr. 4.	
ADD2	unknown		Gene is involved in regulating aspects of shoot meristem function or leaf development. Shoot meristem function is not as severely affected in add2 mutants as in add1 mutants. Mutants display temperature-sensitivity.	
ADD3	unknown		Temperature sensitive mutations. Prevents the expansion of leaf blades at high temperature.	
ADE1	unknown		involved in response to ABA	
AK2	unknown		Aspartate Kinase 2	
ALS2	unknown		a genetic locus involved in response to aluminum. Lines carrying recessive mutations are also sensitive to lanthanum (more sensitive to La than Al).	
ALS5	unknown		a genetic locus involved in response to aluminum. Lines carrying recessive mutations accumulate more aluminum and callose than wild type.	
ALS7	unknown		a genetic locus involved in response to aluminum. Lines carrying recessive mutations appear to accumulate less aluminum and callose than wild type.	
ASC1	unknown		Identified in a screen for second site suppressors of a mutation in a cauliflower mosaic virus movement protein. Accelerates development of symptoms of pathogenesis.	
ATBP2	protein_coding		A 22kDa protein that binds the TBP1 (a telomere binding protein) only during leaf senescence.	
ATCAL1	pseudogene		This is likely to be a pseudogene. Analysis of a partial genomic clone reveals a termination codon within the second exon.  Sequence has not been deposited with GenBank.	
AT3G16770.1	protein_coding	ethylene-responsive element binding protein	Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3).  The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6.   It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3. The mRNA is cell-to-cell mobile.	ethylene-responsive element binding protein;(source:Araport11)
SAR1	unknown		Genetic locus that mediates suppression of auxin response and acts downstream of AXR1.  Sar1 maps to an approximately 100 kb region on chromosome 1 between m253 and mi423a.	
ATTS02	unknown		Mutant shows acquired thermotolerance deficiency.	
AVB1	unknown		Vascular bundles of the mutant have the xylem completely surrounding the phloem.  Stele morphology is also affected.	
BLU2	unknown		Mutant phenotype is lacking of blue light-dependent inhibition of hypocotyl elongation.	
BLU3	unknown		The blu3 mutant is a photomorphogenic mutant which shows reduced inhibition of hypocotyl growth in blue light. Hypocotyl elongation is not inhibited in the mutant seedlings by continuous blue light but is inhibited by far red light. The BLU3 gene appears to be important only during seedling development because the blu mutations have little effect on mature plants, whereas hypocotyl elongation and cotyledon expansion are altered in seedlings.	
CEN1	unknown		Involved in root hair morphogenesis.	
CEN2	unknown		Centipede2 required for correct root hair shape and length	
CEN3	unknown		Centipede3 required for root hair growth	
CER21	unknown		a genetic locus involved in cuticular wax biosynthesis.	
CEX1	unknown		an unmapped genetic locus that is involved in jasmonic acid response pathway. Lines carrying recessive mutations in this mendelian locus phenocopies wild type plants treated with JA.	
CHL7	unknown		Identified in a screen for chlorate resistant mutants.	
CIN1	unknown		cytokinin-insensitive mutants	
CIN2	unknown		Cin2 mutants are insensitive to cytokinins. They do not display the ethylene mediated triple response induced by cytokinin, suggesting a role in cytokinin-mediated induction of ethylene biosynthesis.	
CIN3	unknown		cytokinin insensitive 3 (cin3) dominant mutant	
COP4	unknown		Involved in light signal transduction- may act downstream of phytochrome in the light regulatory pathway.	
COT1	unknown		Genetic locus that encodes a regulator of trichome initiation.  The COT1 locus is located on chromosome 2 15.3 cM north of er.	
CPR20	unknown		cpr20 is one of two mutations (along with cpr21) contributing to the enhanced disease resistance phenotype and constitutive expression of  PR-1, PR-2 and PR-5 in the cep mutant. The cpr20 mutation is always associated with the CEP phenotype.	
CPR21	unknown		cpr21 is one of two mutations (along with cpr20) contributing to the enhanced disease resistance phenotype and constitutive expression of  PR-1, PR-2 and PR-5 in the cep mutant.	
CRI1	protein_coding		Mutant has translucent and wrinkled cotyledons and leaves, abnormal chloroplast organization, reduced chlorophyll,  reduced dry weight ,decreased number of palisade cells, increased intercellular spaces. Accumulates cytokinins.	
CSI52	unknown		Mutant is cesium insensitive and effects high affinity potassium uptake.	
CUE3	unknown		a gene involved in positive regulation of nuclear gene expression by light. mutant allele exhibits virescent or delayed-greening phenotype.	
CUE4	unknown		chlorophyll a/b-binding [CAB] protein-underexpressed. Also known as uniformly pale mutants. Suppresses CAB3 gene expression.	
CUE6	unknown		mutants have reduces expression of the CAB3 gene and are virescent or delayed-greening.	
CUE8	unknown		Mutation causes delayed greening and reduced expression of CAB and RBCS genes	
CUE9	unknown		chlorophyll a/b-binding [CAB] protein-underexpressed mutant.  uniformly pale mutant displaying reduced expression of the CAB3 gene.	
CUP1	unknown		Copper-sensitive mutant, not deficient in phytochelatin synthesis	
CUS1	unknown		A genetic locus conferring sensitivity to copper. It has not yet been mapped genetically as of April 14, 2003.	
DRT103	protein_coding		DNA-damage-repair/toleration 103, shows light dependent photoreactivating enzyme activity.	
DTH9	unknown		defense gene detachment9 regulator of disease susceptibility that operates upstream or independently of salicylic acid. Recessive mutants are susceptible to both virulent and avirulent forms of the oomycete Peronospora and also exhibits increased susceptibility to the moderately virulent bacterial pathogen Pseudomonas syringae, but not involved in salicylic acid metabolism.	
EAF1	unknown		early flowering 1 mutant	
EDS4	unknown		Identified in a screen for mutants with enhanced  susceptibility to Pseudomonas syringae pv. maculicola ES4326. Mutants affect signaling in systemic and induced resistance.	
EIN6	protein_coding		ein6 mutant plants are insensitive to ethylene suggesting a defect in the ethylene response pathway. Ein6 is epistatic to ctr1 (constitutive triple response mutant),	
EIN7	unknown		ethylene insensitive 7, mutant shows no induced systemic resistance at application site.	
ELF1	unknown		early flowering mutants	
ELF2	unknown		Influences the time of the vegetative-to-reproductive transition in Arabidopsis.	
ERH1	unknown		ectopic root hair mutant	
FBR2	unknown		Mutant fbr2 plants are resistant to fumonisin B1, a fungal pathogen toxin that elicits programmed cell death. Expression of certain pathogenesis related proteins is also decreased in the mutant with respect to wild type.	
FEM1	unknown		affects female gametophyte development and is mapped between nga76 and LFY3 on chromosome 5.	
FEM2	unknown		affects female gametophyte development and mapped on chr 2 near nga8 9.6 6 4.1 (map distance = 9.7 cM (n=52), recombination frequency with nga 8 = 9.6 +/- 4.1	
FEM3	unknown		involved in megagametogenesis and female gametophyte function exhibiting a reduced seed set. very closely linked to nga280 (LOD score= 16.3 (n=54)	
FEM4	unknown		affects female and male gametophyte development and is mapped on chr 1 between nga280 and AthATPASE.	
FFO1	unknown		a genetic locus involved in floral organogenesis. Mutants enhance ufo-6 phenotype and exhibit abnormal floral organ size, shape, and some organs fail to separate from each other. genetically mapped on chr 5, 21 cM from HAN.	
FFO2	unknown		a genetic locus involved in floral organogenesis. Mutants enhance ufo-6 phenotype and exhibit abnormal floral organ size, shape, and some organs fail to separate from each other. genetically mapped on chr 4, 19 cM from AP2.	
FFO3	unknown		a genetic locus involved in floral organogenesis. Mutants enhance ufo-6 phenotype and exhibit abnormal floral organ size, shape, and some organs fail to separate from each other. genetically mapped on chr 2, 25 cM from CLV3.	
FIN2	unknown		a far red light-specific signaling component downstream of PHYA	
FLS1	unknown		Involved in sensing flagellin, a potent elicitor of the defense response.  Plants of the Ws-O ecotype are insensitive to flagellin. May be involved in binding the elicitor.	
GAR2	unknown		Suppresses Gibberellin insensitive phenotype of GAI	
GAS1	unknown		suppresses the dwarfness and dark green leaves of gai mutants and defines a genetic locus  which appears to reduce the GA-dependency of plant growth.	
GCA2	unknown		Isolated in a screen for abscisic acid  insensitive plants. Affects stomatal responses to ABA.	
AT1G73250.1	protein_coding	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1	encodes a bifunctional 3, 5-epimerase-4-reductase in L-fucose synthesis and converts GDP-D-mannose to GDP-L-fucose in vitro along with MUR1 (GDP-D-mannose 4,6-dehydratase). It is expressed in all tissues examined, but most abundantly in roots and flowers.	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1;(source:Araport11)
GFA3	unknown		effects polar nuclei fusion, cellularization and female gametophyte development	
GFA4	unknown		Affects female gametophyte development.  Located on chromosome 3 around 98 +/- 3.0	
GFA5	unknown		Effects female gametophyte development	
GFA7	unknown		affects polar nuclei fusion of female gametophyte development	
GIN5	unknown		glucose insensitive mutant, may be involved in response to ABA as well	
GOE1	unknown		a genetic locus involved in gibberellin signalling pathway. Lines carrying recessive mutations in this locus overexpresses reporters with GASA1 promoter and endogenous GASA1 and other GA-signalling related genes.	
GOE2	unknown		a genetic locus involved in gibberellin signalling pathway. Lines carrying recessive mutations in this locus overexpresses reporters with GASA1 promoter and endogenous GASA1 and other GA-signalling related genes. This locus is genetically mapped on chr 3 near SSLP marker nga162.	
GOE3	unknown		a genetic locus involved in gibberellin signalling pathway. Lines carrying semi-dominant mutations in this locus overexpresses reporters with GASA1 promoter and endogenous GASA1 and other GA-signalling related genes.	
HBA1	unknown		An unmapped genetic locus in Columbia, where a recessive mutation has increased expression of beta amylase. This increased level of beta amylase is dependent on 2% sucrose medium. A higher concentration of sucrose in the medium (6%) abolishes this phenotype.	
HCF2	unknown		nuclear photosynthetic mutant displaying abnormally-high chlorophyll fluorescence	
HCF5	unknown		nuclear photosynthetic electron transport mutant with a pleiotropic effect on chloroplast gene expression	
IAE2	unknown		a genetic locus involved in Ac/Ds transposable element excision in Arabidopsis. Lines carrying semi-dominant mutation exhibit increased frequency of somatic excision.  iae mutants represent a possible means of improving the efficiency of Ac/Ds transposon tagging systems in Arabidopsis	
LBA2	unknown		Unmapped QTL which behaves as a single mendelian locus affecting the sucrose-induced expression of Beta- amylase. Ler allele has reduced induction relative to Columbia.	
ICU3	unknown		Mutant has curled, involute leaves. Phenotype was inherited as a single recessive trait. No ectopic expression of AG or AP3 in mutant.	
ICU5	unknown		incurvata 5, a completely dominant mutant with curled involute leaves and a compact rosette	
ICX1	unknown		increased chalcone synthase expression 1 (ICX1) whose gene product may be involved in light-regulation of gene expression and with developmental processes occurring in the epidermis.	
IHR1	unknown		A genetic locus involved in the hypersensitive response.  The resistance of mutants to Pseudomonas syringae is dependent on elevated levels of salicylic acid	
ISR1	unknown		Plants with the recessive form of isr1 (found in ecotypes RLD and Ws) show reduced sensitivity to ethylene and lack the induced systemic resistance response to pathogen attack	
JIN4	unknown		Identified in a screen for jasmonic acid insensitive mutants lacking jasmonic acid induced root growth inhibition.	
LK3	unknown		LK3 is a mutant deficient in lipid fatty acid desaturation	
LSD2	unknown		lesion formation without pathogen infection	
LSD3	unknown		Mutants are affected in the control of cell death initiation.	
LSD4	unknown		Spontaneous lesions form on plants with a dominant mutation in LSD4. Mutants also express genes characteristic of disease resistance responses.	
LSD5	unknown		mutant forms lesions simulating disease resistance response	
LSD6	unknown		Lesions simulating disease	
MAA1	unknown		Mutant plants have reduced fertility due to a defect in female gametophyte development. May affect pollen tube guidance as pollen tubes grow towards the micropyle of mutant ovules but do enter.	
MGO2	unknown		Mutants have reduced numbers of leaves and floral organs, larger meristems and fasciation of the inflorescence stem.	
MS10	unknown		male sterile 10, possibly the eceriferum (cer) class of mutant	
MS11	unknown		Male sterile mutant in Arabidopsis thaliana.	
MS12	unknown		male sterile 12	
MS13	unknown		in mutants, pollen dehisces but does not germinate except under high humidity. Mutants have a waxy phenotype,  might be a cer mutation.	
MS7	unknown		Male sterile. In ms7 mutant plants, the tapetal cytoplasm disintegrates at the late vacuolate  microspore stage, apparently causing the degeneration of microspores and pollen grains.	
MS8	unknown		male-sterile 8	
MS9	unknown		male-sterile mutant 9	
MUR11	unknown		a genetic locus involved in cell wall biosynthesis. Mutants have different monosaccharide composition from that in wild type.	
MUR6	unknown		A genetic locus involved in arabinose biosynthesis.	
MUR7	unknown		a genetic locus involved in arabinose biosynthesis.	
MUR8	unknown		a genetic locus involved in rhamnose biosynthesis	
MUR9	unknown		a genetic locus involved in cell wall biosynthesis. Mutants have different monosaccharide composition from that in wild type and have reduced growth rate and vigor.	
NFZ24	unknown		a genetic locus involved in herbicide norflurazone tolerance in accession Dijon. There is only one article in Russian published about this locus.	
NPH2	unknown		nonphototropic hypocotyl 2, involved in blue light-induced seedling phototropism	
PEF1	unknown		involved in phytochrome-mediated signaling pathway. mutants were selectively insensitive to both red and far-red light in the inhibition of hypocotyl elongation response.	
PHX2	unknown		lsd5 cell death suppressor	
PHX3	unknown		lsd5 cell death suppressor	
PMR1	unknown		mutants are resistant to Erisiphe chicoracearum but susceptible to the closely related powdery mildew Erisiphe orontii	
PSI2	unknown		phytochrome signaling, specifically and negatively regulates both phyA and phyB phototransduction pathways. It maps to the bottom of chr. 5.	
PST1	unknown		Genetic locus involved in photoautotrophic salt tolerance. Activities of the active oxygen scavengers superoxide dismutase and ascorbate peroxidase were enhanced significantly in mutant plants.	
RAZ1	unknown		involved in the activity of a high-affinity amino acid transporter. Maps to chromosome 5 at 69.6 +/- 1.8 cM.	
RDO1	unknown		reduced dormancy 1 (rdo1)	
RLN1	unknown		QTL affecting flowering time identified in cross between H512 and Landsberg erecta, maps near FHA and G1	
RLN2	unknown		QTL affecting flowering time identified in cross between H512 and Landsberg erecta, maps near FT and FE	
RLN3	unknown		QTL affecting flowering time identified in cross between H512 and Landsberg erecta, might correspond to FRI/FLA	
RLN4	unknown		QTL affecting flowering time identified in cross between H512 and Landsberg erecta, maps to a region containing CO, FY and FLC	
RLN5	unknown		QTL affecting flowering time identified in cross between H512 and Landsberg erecta, doesn't map near any known loci affecting flowering time	
RLT11	unknown		a genetic locus involved in response to basic amino acids. Amino acid uptake assays in mutants suggest that the gene product may be a low affinity (high Km) basic amino acid transporter. May be allelic to raec1.	
RM57	unknown		Genetic locus affecting root hair development.	
ROC6	unknown		belongs to cyclophilin family	
RPP14	unknown		Variations at this locus confers resistance to  Peronospora parasitica in different ecotypes. Genes similar in sequence to RPS2/N map near this genetically defined locus.	
RPP21	unknown		R-gene locus, involved in specific recognition of P. parasitica isolates	
RPP22	unknown		disease resistance gene	
RPP23	unknown		R-gene locus, involved in specific recognition of P. parasitica isolates, conferring resistance.	
RPP24	unknown		Genetic locus affecting disease resistance.	
RPW2	unknown		A locus conferring resistance to the fungal pathogen Erisyphe cichoracearum in Wa-1 ecotype. Col-5 is susceptible.RPW2 appears to be semi-dominant.	
RPW7	unknown		RPW7 was mapped to chromosome 3 in a 8.5 cM interval flanked by CDC2A and AFC1.	
RPW8.1	unknown		A distinct type of R gene/Resistance locus present in accession Ms-0 that activates resistance against powdery mildew pathogens in a non-race-specific manner. Absent in Col-0. Would be located around AT3g50470.	
RXC2	unknown		governs resistance to Xanthomonas campestris 2D520	
SAG1	unknown		senescence-associated gene	
SAG19	unknown		a member of senescence-associated genes.	
SAG4	unknown		senescence-associated gene	
SAX1	unknown		a dwarf mutant, which is affected in brassinosteroid biosynthesis. The SAX1 protein is involved in brassinosteroid-dependent growth of seedlings in both light and dark conditions.	
SFR7	unknown		Mutants show changes in fatty acid composition after (and only after) cold acclimation.	
SHV1	unknown		Involved in root hair morphogenesis and tip growth.	
SIL2	unknown		a genetic locus involved in gene silencing but not required for homology-dependent gene silencing.	
SKU1	unknown		partially dominant mutation in WS that show an exaggerated right-slanting root-growth phenotype on agar surfaces.	
SKU2	unknown		Roots of wild-type Arabidopsis thaliana seedlings in the Wassilewskija (WS) and Landsberg erecta (ler) ecotypes often grow  aslant on vertical agar surfaces. sku2 shows an exaggerated right-slanting  root-growth phenotype on agar surfaces.	
SOM2	unknown		Isolated in a screen for mutations  defective in maintaining epigenetic gene silencing.	
SRL1	unknown		Genetic locus affecting hypocotyl length in red light.  Mutant shows enhanced responsiveness (short hypocotyls) in continuous red light, but not in response to far red light. The hypersensitive phenotype of srl1 is completely phyB-dependent.	
SSI1	unknown		Dominant (haploinsufficient) mutations in SSI1 result in NPR1 independent activation of defense response gene expression and lesion formation. The ssI1 phenotype is dependent on salicylic acid.	
SUN7	unknown			
SUZ1	unknown		recessive mutation partially suppresses zwichel-3. mapped on chr 3, approximately 20 cM from SSLP marker nga162	
SUZ2	unknown		recessive mutation partially suppresses zwichel-3. mapped on chr 4, approximately 9 cM from CAPS marker AG1.	
SUZ3	unknown		recessive mutation partially suppresses zwichel-3 and is involved in trichome branch formation.	
TED1	unknown		Mutants partially suppress the seedling morphological phenotype of det1-1. Possibly allelic to fca.	
TL46	unknown		Tl46 mutants accumulate 40% as much starch as the wild-type and lack the 54 kD subunit of ADP-glucose pyrophosphorylase.	
VAL294	unknown			
VAN1	unknown		Mutants are impaired in vascular patterning.	
VAN6	unknown		Isolated as a recessive mutation in screen for plants defective in vascular patterning. Lateral veins are incomplete and tertiary veins are absent. Vascular tissues are disorganized.	
VID1	unknown		Mutant resembles the wild-type plants when healthy but develops a severely dwarfed phenotype with a loss of apical dominance following infection by a tobamovirus.	
VLF1	unknown		quantitative trait locus for very-low-fluence response (VLF) that is polymorphic between Ler and Col. involved in phytochrome-mediated signal transduction pathway.	
VLF2	unknown		quantitative trait locus for very-low-fluence response (VLF) that is polymorphic between Ler and Col. involved in phytochrome-mediated signal transduction pathway	
VSM1	unknown		Identified as a mutant resistant to  turnip vein clearing virus. Defective in viral movement thus preventing systemic infection and spread of disease.	
XRS11	unknown		mutant hypersensitive to DNA-damaging treatment	
XRS4	unknown			
XRS9	unknown		Genetic locus involved in sensitivity to x-ray irradiation (xrs). Mutants are also sensitive to DNA-damaging agents.	
XTC1	unknown		mutation that transforms leaves into cotyledons and delays the morphogenesis  of the embryo proper at the globular-to-heart transition.	
XTC2	unknown		Mutant produces extra cotyledons due to a change in the relative timing of embryo development relative to shoot development	
AT1G58130.1	pseudogene			pseudogene of F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G58180.1	protein_coding	beta carbonic anhydrase 6		beta carbonic anhydrase 6;(source:Araport11)
AT1G58140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.6e-253 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G58100.1	protein_coding	TCP family transcription factor 	Encodes TCP8, belongs to the TCP transcription factor family known to bind site II elements in promoter regions.	TCP family transcription factor;(source:Araport11)
AT1G58090.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G58110.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT1G58120.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G58150.1	protein_coding			phosphoglycerate kinase;(source:Araport11)
AT1G58160.1	pseudogene	Mannose-binding lectin superfamily protein	At1g58160 in Col-0 has been shown to be a pseudogene due to a stop codon in the first exon (PMID:22307853). Its functional copy in other ecotypes (Bay-0) encodes JAX1, a jacalin-type lectin gene that confers resistance against potexviruses.	jacalin lectin-like protein;(source:Araport11)
AT1G58170.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT1G10850.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G01860.1	protein_coding	Ribosomal RNA adenine dimethylase family protein	dimethyladenosine transferase	Ribosomal RNA adenine dimethylase family protein;(source:Araport11)
AT1G05930.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein (DUF313);(source:Araport11)
AT1G27600.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14.  IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT1G27595.1	protein_coding		Encodes a protein of unknown function containing a Symplekin C domain that is involved in negative regulation of glucose response. Mutants show increased sensitivity to glucose with a variety of assays.	symplekin;(source:Araport11)
AT1G27630.1	protein_coding	cyclin T 1;3		cyclin T 1;(source:Araport11)
AT1G27580.1	protein_coding	Protein of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT1G27650.1	protein_coding	U2 snRNP auxiliary factor small subunit, putative	U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35.    U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.	U2 snRNP auxiliary factor small subunit;(source:Araport11)
AT1G27640.1	protein_coding		Putative role in leaf development.  Comparison of SALK_123839C to Columbia under normal growth conditions resulted in a trend toward increased leaf length in the mutant (P=0.13; median 22 for mutant,17 for Columbia) (Ann Stapleton and Delita Pardue, 2009, personal communication).	hypothetical protein;(source:Araport11)
AT1G27610.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G27620.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G68140.1	protein_coding	Protein of unknown function (DUF1644)		zinc finger/BTB domain protein, putative (DUF1644);(source:Araport11)
AT1G14970.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G33330.1	protein_coding	Class I peptide chain release factor		Class I peptide chain release factor;(source:Araport11)
AT1G33340.1	protein_coding	ENTH/ANTH/VHS superfamily protein		ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT1G33380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.1e-10 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G33360.1	protein_coding	ATP-dependent Clp protease	Encodes ClpX3, a subunit of the Clp protease complex.	ATP-dependent Clp protease;(source:Araport11)
AT1G33390.1	protein_coding	RNA helicase family protein	Over-expression of this gene results in stem fasciation.  The predicted amino acid sequence reveals the presence of two   domains (DEXH-box or DEAD-box helicase and DUF1065 domain) and fragments of two more domains (HrpA domain and HA2 domain).	RNA helicase family protein;(source:Araport11)
AT1G33320.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT1G33350.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G33300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G61270.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G22380.1	protein_coding	UDP-glucosyl transferase 85A3	Encodes a putative UDP-glucosyl transferase. At1g22380 was initially identified as encoding the protein AAF87154, which has been classified as a bHLH protein (AtbHLH152). Subsequently it has been found that the AAF87154 protein appears to be encoded by the AT1G23970 genomic locus.	UDP-glucosyl transferase 85A3;(source:Araport11)
AT1G22630.1	protein_coding			SSUH2-like protein;(source:Araport11)
AT1G22620.1	protein_coding	Phosphoinositide phosphatase family protein	SAC domain phosphoinositide (3,5)P2 phosphatase. Colocalized  with a Golgi Marker. Required for normal cell morphogenesis, cell wall synthesis, and actin organization.	Phosphoinositide phosphatase family protein;(source:Araport11)
AT1G57990.1	protein_coding	purine permease 18	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 18;(source:Araport11)
AT1G57980.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT1G12770.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a DEAD-box RNA helicase that  localizes to mitochondria and is essential for regulating cell-to-cell transport via plasmodesmata. The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G04750.1	protein_coding	vesicle-associated membrane protein 721	Encodes vesicle-associated membrane protein 7B (VAMP7B, or VAMP721). Required for cell plate formation.VAMP721 interacts with KAT1 and KC1 K+ channels, affects channel gating and suppresses the K+ current within the physiological voltage range. Post-transcriptionally regulated by CRT1/2 under ER stress.	vesicle-associated membrane protein 721;(source:Araport11)
AT1G49540.1	protein_coding	elongator protein 2		elongator protein 2;(source:Araport11)
AT1G49530.1	protein_coding	geranylgeranyl pyrophosphate synthase 6	encodes a mitochondria-targeted geranylgeranyl pyrophosphate synthase	geranylgeranyl pyrophosphate synthase 6;(source:Araport11)
AT1G49550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.2e-85 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G33660.1	pseudogene	peroxidase family protein	Pseudogene of AT1G33660; peroxidase family protein	pseudogene of ascorbate peroxidase 1;(source:Araport11)
AT1G33640.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G66000.1	protein_coding	Family of unknown function (DUF577)		hypothetical protein (DUF577);(source:Araport11)
AT1G66010.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G53940.1	protein_coding	GDSL-motif lipase 2	Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistance	GDSL-motif lipase 2;(source:Araport11)
AT1G53950.1	protein_coding	Ubiquitin-like superfamily protein		ubiquitin-40S ribosomal S27a-like protein;(source:Araport11)
AT1G53970.1	protein_coding			GDSL esterase/lipase-like protein;(source:Araport11)
AT1G53980.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT1G53930.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT1G21170.1	protein_coding	Exocyst complex component SEC5		Exocyst complex component SEC5;(source:Araport11)
AT1G65020.1	protein_coding			plasma protein;(source:Araport11)
AT1G58210.1	protein_coding	kinase interacting family protein	Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the plasma membrane.	EMBRYO DEFECTIVE protein;(source:Araport11)
AT1G58230.1	protein_coding	binding		binding protein;(source:Araport11)
AT1G58200.1	protein_coding	MSCS-like 3	A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity.	MSCS-like 3;(source:Araport11)
AT1G58220.1	protein_coding	Homeodomain-like superfamily protein	Plays an essential role in organ development by regulating cell expansion either directly by affecting cell wall architecture and/or cytoplasmic growth or indirectly through the ethylene and/or ABA signaling pathways.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G63020.1	protein_coding	nuclear RNA polymerase D1A	Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D).  Required for posttranscriptional gene silencing.	nuclear RNA polymerase D1A;(source:Araport11)
AT1G63030.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in the reduction of gibberellic acid biosynthesis. This gene is expressed in all tissues examined, but most abundantly expressed in rosette leaves and stems. Overexpression of DDF1, a putative paralog of this gene, also reduces gibberellic acid biosynthesis and makes the plants more tolerant to high-salinity levels.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G30860.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G30870.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT1G27510.1	protein_coding	Protein of unknown function (DUF3506)	Encodes one of the two plastid proteins EXECUTER (EX1, AT4G33630) and EX2 (AT1G27510). Mediates singlet oxygen induced programmed cell death.	UvrB/UvrC domain protein (DUF3506);(source:Araport11)
AT1G71870.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G42240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.3e-276 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G42100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.8e-138 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT1G42310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.6e-236 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT1G42210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.3e-57 P-value blast match to At1g36190.1/92-340 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G42280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, similar to putative helicase GI:4585936 from (Arabidopsis thaliana);(source:TAIR10)
AT1G42160.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Putative retroelement, blastp match of 43%25 identity and 4.5e-33 P-value to GP|13992688|gb|AAK51582.1|AC022352_18|AC022352 Putative retroelement {Oryza sativa};(source:TAIR10)
AT1G42290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, similar to putative helicase GI:4585936 from (Arabidopsis thaliana);(source:TAIR10)
AT1G42170.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.7e-127 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT1G42320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.9e-261 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G42090.1	pseudogene			pseudogene of proline transporter 2;(source:Araport11)
AT1G22830.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G16710.1	protein_coding	histone acetyltransferase of the CBP family 12	Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates.  No  single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides,  suggesting that HAC12 can acetylate any  of several lysines present in the peptides.	histone acetyltransferase of the CBP family 12;(source:Araport11)
AT1G16730.1	protein_coding	unknown protein 6		hypothetical protein;(source:Araport11)
AT1G16760.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT1G16720.1	protein_coding	high chlorophyll fluorescence phenotype 173	Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA.  Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits.  The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.	high chlorophyll fluorescence phenotype 173;(source:Araport11)
AT1G16740.1	protein_coding	Ribosomal protein L20		Ribosomal protein L20;(source:Araport11)
AT1G16750.1	protein_coding	Protein of unknown function, DUF547		GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547);(source:Araport11)
AT1G75480.1	pseudogene			pseudogene of gamma-glutamyl hydrolase 1;(source:Araport11)
AT1G75470.1	protein_coding	purine permease 15	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease;(source:Araport11)
AT1G75520.1	protein_coding	SHI-related sequence 5	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.SRS5 is a positive regulator of photomorphogenesis.	SHI-related sequence 5;(source:Araport11)
AT1G75510.1	protein_coding	Transcription initiation factor IIF, beta subunit		Transcription initiation factor IIF, beta subunit;(source:Araport11)
AT1G75500.1	protein_coding	Walls Are Thin 1	An Arabidopsis thaliana homolog of Medicago truncatula NODULIN21 (MtN21). The gene encodes a plant-specific, predicted integral membrane protein and is a member of the Plant-Drug/Metabolite Exporter (P-DME) family (Transporter Classification number: TC 2.A.7.3) and the nodulin MtN21-like transporter family.	Walls Are Thin 1;(source:Araport11)
AT1G17630.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein	Encodes a PPR protein involved in mitochondrial functioning. Mutants suppress cell wall defects caused by C17 chemical inhibitor. Mutants are defective in cytochrome c maturation and activation of mitochondrial retrograde signalling.	Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G17540.1	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT1G17530.1	protein_coding	translocase of inner mitochondrial membrane 23	Encodes a translocase of inner mitochondrial membrane.	translocase of inner mitochondrial membrane 23;(source:Araport11)
AT1G17560.1	protein_coding	Ribosomal protein L14p/L23e family protein	Encodes HUELLENLOS (HLL), a mitochondrial ribosome protein, similar to L14 ribosomal protein of eubacteria. HLL is essential for normal ovule development.	Ribosomal protein L14p/L23e family protein;(source:Araport11)
AT1G17545.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G17580.1	protein_coding	myosin 1	Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development.	myosin 1;(source:Araport11)
AT1G17590.1	protein_coding	nuclear factor Y, subunit A8		nuclear factor Y, subunit A8;(source:Araport11)
AT1G17550.1	protein_coding	homology to ABI2	Protein Phosphatase 2C	homology to ABI2;(source:Araport11)
AT1G17615.1	protein_coding	Disease resistance protein (TIR-NBS class)	TN2 is an atypical TIR-NBS protein that  lacks the LRR domain common in typical NLR receptors. It interacts with EXO70B1, a subunit of the exocyst complex. Loss of function mutants in TN2 can suppress EXO70B1 mutants suggesting that EXO70B1  acts through TN2.	Disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G17510.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G17520.1	protein_coding	Homeodomain-like/winged-helix DNA-binding family protein	Single Myb Histone (SMH) gene family member. Contains terminal acidic SANT domain.	Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
AT1G17620.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT1G17600.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	SOC3 is a TIR-NB-leucine-rich repeat (TNL) protein.Mutants suppress loss of chs2 phenotype of auto-activation of immunity.  When the TIR domain of SOC3  interacts with CHS2 the binding results in temperature activation of cell death, the suppressors inhibit this interaction.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G17610.1	protein_coding	Disease resistance protein (TIR-NBS class)	TN-type protein that controls temperature-dependent growth and defense responses .Mutant accumulates steryl-esters at low temperatures and shows temperature dependent activation of defense responses..	Disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G17640.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Belongs to a member of the RNA-binding glycine-rich (RBG) gene superfamily.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G64690.1	protein_coding	branchless trichome	Encodes BRANCHLESS TRICHOME (BLT) involved in trichome development.  A large portion of the internal amino acid sequence of BLT is predicted to form a coiled-coil domain.  BLT mutants form branchless trichomes with blunt tips.	branchless trichome;(source:Araport11)
AT1G64700.1	protein_coding			DUF4228 domain protein;(source:Araport11)
AT1G67410.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT1G04230.1	protein_coding	Protein of unknown function (DUF2361)		rRNA-processing EFG1-like protein (DUF2361);(source:Araport11)
AT1G69960.1	protein_coding	serine/threonine protein phosphatase 2A	type 2A serine/threonine protein phosphatase (PP2A) mRNA,	serine/threonine protein phosphatase 2A;(source:Araport11)
AT1G48260.1	protein_coding	CBL-interacting protein kinase  17	Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17).	CBL-interacting protein kinase 17;(source:Araport11)
AT1G48250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35400.1);(source:TAIR10)
AT1G48240.1	protein_coding	novel plant snare 12	member of NPSN Gene Family	Putative plant snare 12;(source:Araport11)
AT1G48230.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	Nucleotide/sugar transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G13590.1	protein_coding	phytosulfokine 1 precursor	Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.	phytosulfokine 1 precursor;(source:Araport11)
AT1G13600.1	protein_coding	basic leucine-zipper 58		basic leucine-zipper 58;(source:Araport11)
AT1G13610.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G13620.1	protein_coding		Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor-like protein;(source:Araport11)
AT1G34904.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.6e-90 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata);(source:TAIR10)
AT1G34780.1	protein_coding	APR-like 4	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.	APR-like 4;(source:Araport11)
AT1G34610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G09170.1);(source:TAIR10)
AT1G34740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G05280.1);(source:TAIR10)
AT1G34750.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G34842.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT1G34770.1	protein_coding		Encodes a nuclear localized,  structural subunit of the SMC 5/6 complex and a non- SMC element. Loss of function results in abnormal cell division and embryo lethality. Analysis of partially rescued lines indicates a role in double strand break DNA repair. Similar phenotype to NSE1 which it also interacts with.Maintains cell viability together with NSE1 during early embryogenesis.	melanoma-associated antigen G1-like protein;(source:Araport11)
AT1G34690.1	pseudogene			pseudogene of maturase K;(source:Araport11)
AT1G34760.1	protein_coding	general regulatory factor 11	Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light.	general regulatory factor 11;(source:Araport11)
AT1G34640.1	protein_coding	peptidases		peptidase;(source:Araport11)
AT1G34630.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G04080.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a U1 small nuclear ribonucleoprotein (snRNP) factor involved in alternative splicing.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G04070.1	protein_coding	translocase of outer membrane 22-I	Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion.	translocase of outer membrane 22-I;(source:Araport11)
AT1G02800.1	protein_coding	cellulase 2	Encodes a protein with similarity to endo-1,4-b-glucanases and is a   member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by  Heterodera schachtii.May be involved in the development and function of syncitia.	cellulase 2;(source:Araport11)
AT1G02790.1	protein_coding	polygalacturonase 4	encodes a exopolygalacturonase.	polygalacturonase 4;(source:Araport11)
AT1G02780.1	protein_coding	Ribosomal protein L19e family protein		Ribosomal protein L19e family protein;(source:Araport11)
AT1G02750.1	protein_coding	Drought-responsive family protein		Drought-responsive family protein;(source:Araport11)
AT1G02740.1	protein_coding	MRG family protein		MRG family protein;(source:Araport11)
AT1G02730.1	protein_coding	cellulose synthase-like D5	Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.It's expression is cell cycle dependent and it appears to function in cell plate formation.	cellulose synthase-like D5;(source:Araport11)
AT1G03000.1	protein_coding	peroxin 6	Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis.  May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import.	peroxin 6;(source:Araport11)
AT1G02770.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein;(source:Araport11)
AT1G75310.1	protein_coding	auxin-like 1 protein		auxin-like 1 protein;(source:Araport11)
AT1G77120.1	protein_coding	alcohol dehydrogenase 1	Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. The mRNA is cell-to-cell mobile.	alcohol dehydrogenase 1;(source:Araport11)
AT1G34200.1	protein_coding	Glyceraldehyde-3-phosphate dehydrogenase-like family protein		Glyceraldehyde-3-phosphate dehydrogenase-like family protein;(source:Araport11)
AT1G34180.1	protein_coding	NAC domain containing protein 16		NAC domain containing protein 16;(source:Araport11)
AT1G34190.1	protein_coding	NAC domain containing protein 17	Encodes a NAC domain transcription factor that regulates the mitochondrial retrograde response and coordinates organellar functions and stress responses.	NAC domain containing protein 17;(source:Araport11)
AT1G71010.1	protein_coding	FORMS APLOID AND BINUCLEATE CELLS 1C	Encodes a protein that is predicted to act as a phosphatidylinositol-3P 5-kinase, but, because it lacks a FYVE domain, it is unlikely to be efficiently targeted to membranes containing the proposed phosphatidylinositol-3P substrate. Therefore, its molecular function remains unknown. The mRNA is cell-to-cell mobile.	FORMS APLOID AND BINUCLEATE CELLS 1C;(source:Araport11)
AT1G07600.1	protein_coding	metallothionein 1A	metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage.	metallothionein 1A;(source:Araport11)
AT1G07610.1	protein_coding	metallothionein 1C	one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance. The mRNA is cell-to-cell mobile.	metallothionein 1C;(source:Araport11)
AT1G63780.1	protein_coding	Ribosomal RNA processing Brix domain protein	Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located in nucleolus and cajal bodies.	Ribosomal RNA processing Brix domain protein;(source:Araport11)
AT1G68730.1	protein_coding	Zim17-type zinc finger protein		Zim17-type zinc finger protein;(source:Araport11)
AT1G68720.1	protein_coding	tRNA arginine adenosine deaminase	Encodes the chloroplastic A-to-I tRNA editing enzyme.	tRNA arginine adenosine deaminase;(source:Araport11)
AT1G68725.1	protein_coding	arabinogalactan protein 19	AGP19 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP18, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers. Non-consensus splice site at the intron:exon boundary (AT:exon)	arabinogalactan protein 19;(source:Araport11)
AT1G68740.1	protein_coding	EXS (ERD1/XPR1/SYG1) family protein	Encodes PHO1;H1, a member of the PHO1 family.  Involved in inorganic phosphate (Pi) transport and homeostasis.  Complements pho1 mutation. Its expression is responsive to both phosphate (Pi) and phosphite (Phi) in shoots.	EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT1G11820.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT1G48960.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT1G48950.1	protein_coding	C3HC zinc finger-like 		C3HC zinc finger-like protein;(source:Araport11)
AT1G48940.1	protein_coding	early nodulin-like protein 6		early nodulin-like protein 6;(source:Araport11)
AT1G48930.1	protein_coding	glycosyl hydrolase 9C1		glycosyl hydrolase 9C1;(source:Araport11)
AT1G48970.1	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein		NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT1G26340.1	protein_coding	cytochrome B5 isoform A	encodes a member of the cytochromes b5 family of proteins that localizes to the outer envelope of the chloroplast. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro.	cytochrome B5 isoform A;(source:Araport11)
AT1G26350.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G23380.1	protein_coding	KNOTTED1-like homeobox gene 6	homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.	homeobox protein knotted-1-like 6;(source:Araport11)
AT1G23390.1	protein_coding	Kelch repeat-containing F-box family protein	A kelch domain-containing F-box protein. Its N terminus contains a typical F-box motif but its C-terminal domain only consists of one predicted kelch motif. Predicted to be stu Interacts with chalcone synthase CHS to mediate CHS ubiquitination and degradation.	Kelch repeat-containing F-box family protein;(source:Araport11)
AT1G23400.1	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	Promotes the splicing of chloroplast group II introns.	RNA-binding CRS1 / YhbY (CRM) domain-containing protein;(source:Araport11)
AT1G23410.1	protein_coding	Ribosomal protein S27a / Ubiquitin family protein		Ribosomal protein S27a / Ubiquitin family protein;(source:Araport11)
AT1G23420.1	protein_coding	Plant-specific transcription factor YABBY family protein	Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.	Plant-specific transcription factor YABBY family protein;(source:Araport11)
AT1G17330.1	protein_coding	Metal-dependent phosphohydrolase		Metal-dependent phosphohydrolase;(source:Araport11)
AT1G36610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.1e-283 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G31240.1	protein_coding	Bromodomain transcription factor		Bromodomain transcription factor;(source:Araport11)
AT1G27770.1	protein_coding	autoinhibited Ca2+-ATPase 1	Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.	autoinhibited Ca2+-ATPase 1;(source:Araport11)
AT1G27890.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Deadenylase.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G27790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24380.1);(source:TAIR10)
AT1G27810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34710.1);(source:TAIR10)
AT1G27780.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G05280.1);(source:TAIR10)
AT1G27820.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Deadenylase.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G27800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24370.1);(source:TAIR10)
AT1G29010.1	protein_coding			verprolin;(source:Araport11)
AT1G29020.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT1G29000.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G76630.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	SKI3 encodes a cytplasmically localized component of the SKI complex which is involved in exosome mediated RNA decay.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G38270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.2e-205 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G38280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to transposon protein GI:7267360 from (Arabidopsis thaliana);(source:TAIR10)
AT1G38400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-215 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G38410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G38310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.2e-20 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT1G38416.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.8e-32 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G38440.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.0e-121 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-221 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.8e-50 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G43010.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G43020.1	protein_coding	Protein of unknown function, DUF547		electron protein, putative (Protein of unknown function, DUF547);(source:Araport11)
AT1G43000.1	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT1G43005.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT1G43130.1	protein_coding	like COV 2		like COV 2;(source:Araport11)
AT1G43030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.1e-109 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT1G43120.1	pseudogene			pseudogene of Pectin lyase-like superfamily protein;(source:Araport11)
AT1G43110.1	pseudogene			pseudogene of Pectin lyase-like superfamily protein;(source:Araport11)
AT1G49930.1	protein_coding			alanine-tRNA ligase;(source:Araport11)
AT1G43763.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.9e-96 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata);(source:TAIR10)
AT1G43766.1	pseudogene			pseudogene of Phosphofructokinase family protein;(source:Araport11)
AT1G43755.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-209 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G43745.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-218 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G43715.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.6e-130 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT1G43760.1	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT1G63600.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT1G63630.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G63640.1	protein_coding	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain		P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT1G63610.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G32080.1	protein_coding	membrane protein, putative	Encodes a plant LrgAB/CidAB protein localized to the chloroplast envelope that is involved in chloroplast development, carbon partitioning, ABA/drought response, and leaf senescence.  The gene may have evolved from gene fusion of bacterial lrgA and lrgB.	membrane protein;(source:Araport11)
AT1G71480.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein		Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT1G71350.1	protein_coding	eukaryotic translation initiation factor SUI1 family protein		eukaryotic translation initiation factor SUI1 family protein;(source:Araport11)
AT1G71470.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G71430.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G71380.1	protein_coding	cellulase 3		cellulase 3;(source:Araport11)
AT1G71520.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G71460.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G71420.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G71370.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT1G71500.1	protein_coding	Rieske (2Fe-2S) domain-containing protein	Encodes PSB33, a protein conserved in the plastid lineage. PSB33 is associated with the chloroplast thylakoid membrane and provides stability to Photosystem II. The mRNA is cell-to-cell mobile.	Rieske (2Fe-2S) domain-containing protein;(source:Araport11)
AT1G71450.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G71410.1	protein_coding	ARM repeat superfamily protein	One of two paralogs in Arabidopsis.SCYL2B is a membrane localized protein that interacts with components of clathrin-mediated  vesicle trafficking pathways. Loss of both SCYL2B and .SCYL2A results in severe growth defects.	ARM repeat superfamily protein;(source:Araport11)
AT1G71360.1	protein_coding	Galactose-binding protein	Encodes a member of the mid-SUN subfamily of SUN-domain proteins that is localized to both the nuclear envelope and the ER.  It is involved in early seed development and nuclear morphology.	Galactose-binding protein;(source:Araport11)
AT1G71490.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G71440.1	protein_coding	tubulin folding cofactor E / Pfifferling (PFI)	Encodes tubulin-folding cofactor E.  Mutant embryos consist of one or a few grossly enlarged cells, surrounded by an endosperm that fails to cellularize and contains a few big nuclei.	tubulin folding cofactor E / Pfifferling (PFI);(source:Araport11)
AT1G71400.1	protein_coding	receptor like protein 12	Encodes a CLAVATA2 (CLV2)-related gene. Complements the clv2 mutant when expressed under the control of the CLV2 promoter. The mRNA is cell-to-cell mobile.	receptor like protein 12;(source:Araport11)
AT1G71530.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G71390.1	protein_coding	receptor like protein 11		receptor like protein 11;(source:Araport11)
AT1G24090.1	protein_coding	RNase H family protein		RNase H family protein;(source:Araport11)
AT1G28540.1	protein_coding		Tail-anchored (TA) OEP membrane protein which possesses a single C-terminal transmembrane domain targeting post-translationally to plastids.	transmembrane protein;(source:Araport11)
AT1G28340.1	protein_coding	receptor like protein 4		receptor like protein 4;(source:Araport11)
AT1G28560.1	protein_coding	snRNA activating complex family protein	Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation.	snRNA activating complex family protein;(source:Araport11)
AT1G28550.1	protein_coding	RAB GTPase homolog A1I		RAB GTPase homolog A1I;(source:Araport11)
AT1G28530.1	protein_coding		Encodes a protein that localizes to both chloroplasts and amyloplasts and is required for both chloroplast and mesophyll development.	deneddylase;(source:Araport11)
AT1G25380.1	protein_coding	NAD+ transporter 2	Encodes a mitochondrial-localized NAD+ transporter that transports NAD+ in a counter exchange mode with ADP and AMP in vitro.	NAD+ transporter 2;(source:Araport11)
AT1G06690.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G06680.1	protein_coding	photosystem II subunit P-1	Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. Phosphorylation of this protein is dependent on calcium. In plsp1-1 mutant plastids, the nonmature form of the protein localizes in the stroma. The mRNA is cell-to-cell mobile.	photosystem II subunit P-1;(source:Araport11)
AT1G06950.1	protein_coding	translocon at the inner envelope membrane of chloroplasts 110	Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. C-terminal half of Tic110 functions as scaffolds for protein-protein interactions.	translocon at the inner envelope membrane of chloroplasts 110;(source:Araport11)
AT1G50720.1	protein_coding	Stigma-specific Stig1 family protein		Stigma-specific Stig1 family protein;(source:Araport11)
AT1G67100.1	protein_coding	LOB domain-containing protein 40		LOB domain-containing protein 40;(source:Araport11)
AT1G25155.1	protein_coding	Glutamine amidotransferase type 1 family protein		Glutamine amidotransferase type 1 family protein;(source:Araport11)
AT1G24938.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1);(source:TAIR10)
AT1G24640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.3e-37 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G24650.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G25180.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G25141.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G32350.1	protein_coding	alternative oxidase 1D		alternative oxidase 1D;(source:Araport11)
AT1G32260.1	protein_coding			envelope glycoprotein;(source:Araport11)
AT1G32330.1	protein_coding	heat shock transcription factor A1D	Member of Heat Stress Transcription Factor (Hsf) family. Negatively regulated by HSP90.2.	heat shock transcription factor A1D;(source:Araport11)
AT1G32340.1	protein_coding	NDR1/HIN1-like 8	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine.	NDR1/HIN1-like 8;(source:Araport11)
AT1G32250.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT1G32270.1	protein_coding	syntaxin, putative	member of SYP2 Gene Family	syntaxin;(source:Araport11)
AT1G32300.1	protein_coding	D-arabinono-1,4-lactone oxidase family protein		D-arabinono-1,4-lactone oxidase family protein;(source:Araport11)
AT1G32360.1	protein_coding	Zinc finger (CCCH-type) family protein		Zinc finger (CCCH-type) family protein;(source:Araport11)
AT1G32280.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a homolog of the barley endosperm-specific gene END1 with seed and pollen specific expression.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G32320.1	protein_coding	MAP kinase kinase 10	member of MAP Kinase Kinase	MAP kinase kinase 10;(source:Araport11)
AT1G51600.1	protein_coding	ZIM-LIKE 2	member of a novel family of plant-specific GATA-type transcription factors.	ZIM-LIKE 2;(source:Araport11)
AT1G51580.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT1G51570.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein	Required for maintenance of inflorescence and shoot SAMs and normal development of the derived vascular cambium, functions in the SAM to promote continuous organogenesis, affects SAM development through STM, where it affects intracellular localization of STM in SAM cells in the peripheral region and prevents STM localization toward the cell wall of SAM cells in the peripheral region.	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein;(source:Araport11)
AT1G51380.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT1G51610.1	protein_coding	Cation efflux family protein		Cation efflux family protein;(source:Araport11)
AT1G51590.1	protein_coding	alpha-mannosidase 1	Encodes an alpha-mannosidase I enzyme responsible for N-glycan maturation.	alpha-mannosidase 1;(source:Araport11)
AT1G51960.1	protein_coding	IQ-domain 27	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 27;(source:Araport11)
AT1G51970.1	protein_coding			B3 domain protein;(source:Araport11)
AT1G65630.1	protein_coding	DegP protease 3	Encodes a putative DegP protease.	DegP protease 3;(source:Araport11)
AT1G65640.1	protein_coding	DegP protease 4	Encodes a putative DegP protease.	DegP protease 4;(source:Araport11)
AT1G65660.1	protein_coding	Pre-mRNA splicing Prp18-interacting factor	Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells.	Pre-mRNA splicing Prp18-interacting factor;(source:Araport11)
AT1G65670.1	protein_coding	cytochrome P450, family 702, subfamily A, polypeptide 1	a member of the cytochrome P450 gene family. molecular function unknown.	cytochrome P450, family 702, subfamily A, polypeptide 1;(source:Araport11)
AT1G65650.1	protein_coding	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1		Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1;(source:Araport11)
AT1G36160.1	protein_coding	acetyl-CoA carboxylase 1	Encodes acetyl-CoA carboxylase. Mutant displays uncoordinated cell divisions which are enhanced by cytokinins. Mutant also has aberrant organization of the apical region in the embryo and abnormal root and shoot development and is deficient in freezing tolerance after cold acclimation. Essential for very long chain fatty acid elongation. The mRNA is cell-to-cell mobile.	acetyl-CoA carboxylase 1;(source:Araport11)
AT1G31940.1	protein_coding			cystic fibrosis transmembrane conductance regulator;(source:Araport11)
AT1G31970.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT1G31960.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G31950.1	protein_coding	Terpenoid cyclases/Protein prenyltransferases superfamily protein		Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT1G31770.1	protein_coding	ATP-binding cassette 14		ATP-binding cassette 14;(source:Araport11)
AT1G31760.1	protein_coding	SWIB/MDM2 domain superfamily protein		SWIB/MDM2 domain superfamily protein;(source:Araport11)
AT1G31750.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT1G12550.1	protein_coding	D-isomer specific 2-hydroxyacid dehydrogenase family protein	Encodes a hydroxypyruvate reductase that reduces HP to glycerate and shows even more activity with glyoxylate, a more upstream intermediate of the photorespiratory cycle.  It is likely targeted to the chloroplast where it could provide a compensatory bypass for the reduction of HP and glyoxylate within this compartment. Together with HPPR2 and TAT1 involved in the biosynthesis of pHPL from tyrosine.	D-isomer specific 2-hydroxyacid dehydrogenase family protein;(source:Araport11)
AT1G12560.1	protein_coding	expansin A7	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Containing a conserved root hair-specific cis-element RHE.  Expressed specifically in root hair cell and involved in root hair elongation.	expansin A7;(source:Araport11)
AT1G12480.1	protein_coding	C4-dicarboxylate transporter/malic acid transport protein	Encodes a membrane protein with 10 predicted transmembrane helices. SLAC1 is a multispanning  membrane protein  expressed predominantly in guard cells that plays a role in regulating cellular ion homeostasis and S-type anion currents. SLAC1 is important for normal stomatal closure in response to a variety of signals including elevated CO2, ozone, ABA, darkness, and humidity. SLAC1:GFP localizes to the plasma membrane.	C4-dicarboxylate transporter/malic acid transport protein;(source:Araport11)
AT1G12570.1	protein_coding	Glucose-methanol-choline (GMC) oxidoreductase family protein	Ortholog of maize IPE1 gene which is involved in pollen exine development.	Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT1G12580.1	protein_coding	phosphoenolpyruvate carboxylase-related kinase 1		phosphoenolpyruvate carboxylase-related kinase 1;(source:Araport11)
AT1G12490.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G12520.1	protein_coding	copper chaperone for SOD1	Copper-zinc superoxide dismutase copper chaperone (delivers copper to the Cu-Zn superoxide dismutase). Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments.  Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.	copper chaperone for SOD1;(source:Araport11)
AT1G12470.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT1G12500.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT1G12600.1	protein_coding	UDP-N-acetylglucosamine (UAA) transporter family		UDP-N-acetylglucosamine (UAA) transporter family;(source:Araport11)
AT1G12540.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G12530.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G23670.1	protein_coding	Domain of unknown function (DUF220)		OBP32pep protein, putative (DUF220);(source:Araport11)
AT1G23490.1	protein_coding	ADP-ribosylation factor 1	Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.  A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	ADP-ribosylation factor 1;(source:Araport11)
AT1G23510.1	protein_coding			OBP32pep protein;(source:Araport11)
AT1G23530.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G23460.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G23580.1	protein_coding	Domain of unknown function DUF220		transmembrane protein, putative (Domain of unknown function DUF220);(source:Araport11)
AT1G23590.1	protein_coding	Domain of unknown function DUF220		OBP32pep protein, putative (Domain of unknown function DUF220);(source:Araport11)
AT1G23470.1	pseudogene			pseudogene of Pectin lyase-like superfamily protein;(source:Araport11)
AT1G23600.1	protein_coding	Domain of unknown function DUF220		OBP32pep protein, putative (Domain of unknown function DUF220);(source:Araport11)
AT1G23480.1	protein_coding	cellulose synthase-like A3	encodes a gene similar to cellulose synthase	cellulose synthase-like A3;(source:Araport11)
AT1G23500.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G23550.1	protein_coding	similar to RCD one 2	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Its transcript level is up-regulated by tunicamycin (N-linked glycosylation inhibitor causing ER stress).	similar to RCD one 2;(source:Araport11)
AT1G23520.1	protein_coding	Domain of unknown function (DUF220)		hypothetical protein (DUF220);(source:Araport11)
AT1G23620.1	pseudogene			pseudogene of OBP32pep protein;(source:Araport11)
AT1G23540.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the PERK family of putative receptor kinases. Overexpression leads to morphological defects and reduced fertility and increased expression of MAX genes.	Protein kinase superfamily protein;(source:Araport11)
AT1G23660.1	protein_coding	Domain of unknown function DUF220		hypothetical protein (Domain of unknown function DUF220);(source:Araport11)
AT1G23560.1	protein_coding	Domain of unknown function (DUF220)		OBP32pep, putative (DUF220);(source:Araport11)
AT1G23610.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G23640.1	protein_coding			OBP32pep protein;(source:Araport11)
AT1G52420.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G19830.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G19710.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G19700.1	protein_coding	BEL1-like homeodomain 10	Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.	BEL1-like homeodomain 10;(source:Araport11)
AT1G19680.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G19790.1	protein_coding	SHI-related sequence 7	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	SHI-related sequence 7;(source:Araport11)
AT1G19740.1	protein_coding	ATP-dependent protease La (LON) domain protein		ATP-dependent protease La (LON) domain protein;(source:Araport11)
AT1G19670.1	protein_coding	chlorophyllase 1	Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast.  Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.	chlorophyllase 1;(source:Araport11)
AT1G19780.1	protein_coding	cyclic nucleotide gated channel  8	Encodes a member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.	cyclic nucleotide gated channel 8;(source:Araport11)
AT1G19770.1	protein_coding	purine permease 14	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. The mRNA is cell-to-cell mobile.	purine permease 14;(source:Araport11)
AT1G19750.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G19835.1	protein_coding	Plant protein of unknown function (DUF869)	TCS1 encodes a coiled-coil domain protein that binds to microtubules and co-localizes with the cortical microtubules. Mutants have defects in trichome branching and hypocotyl elongation. TCS1 interacts with ZWI and appears to be involved in microtubule assembly.	filament-like protein (DUF869);(source:Araport11)
AT1G19810.1	pseudogene			pseudogene of cell division cycle 48C;(source:Araport11)
AT1G19720.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G19690.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G19800.1	protein_coding	trigalactosyldiacylglycerol 1	Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane.  Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	trigalactosyldiacylglycerol 1;(source:Araport11)
AT1G19730.1	protein_coding	Thioredoxin superfamily protein	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.	Thioredoxin superfamily protein;(source:Araport11)
AT1G16920.1	protein_coding	RAB GTPase homolog A1B	small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking.	RAB GTPase homolog A1B;(source:Araport11)
AT1G17090.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G16910.1	protein_coding	Protein of unknown function (DUF640)		LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
AT1G16880.1	protein_coding	uridylyltransferase-related	Encodes a ACT domain-containing protein.  The ACT domain, named after bacterial aspartate kinase, chorismate mutase and TyrA (prephenate dehydrogenase), is a regulatory domain that serves as an amino acid-binding site in feedback-regulated amino acid metabolic enzymes. The mRNA is cell-to-cell mobile.	uridylyltransferase-like protein;(source:Araport11)
AT1G16870.1	protein_coding	mitochondrial 28S ribosomal protein S29-related		mitochondrial 28S ribosomal protein S29-like protein;(source:Araport11)
AT1G17030.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G16860.1	protein_coding	Ubiquitin-specific protease family C19-related protein	Plasma membrane-localized proteins that negatively regulate cellulose synthesis by inhibiting the exocytosis of CESAs.	Ubiquitin-specific protease family C19-related protein;(source:Araport11)
AT1G17040.1	protein_coding	SH2 domain protein A	Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.	SH2 domain protein A;(source:Araport11)
AT1G17050.1	protein_coding	solanesyl diphosphate synthase 2	Encodes one of the two paralogous solanesyl diphosphate synthases - SPS1 (At1g78510) and SPS2 (At1g17050) - that assemble the side-chain of plastoquinone-9 in plastids.	solanesyl diphosphate synthase 2;(source:Araport11)
AT1G16960.1	protein_coding	Ubiquitin domain-containing protein		Ubiquitin domain-containing protein;(source:Araport11)
AT1G16850.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G17020.1	protein_coding	senescence-related gene 1	Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.	senescence-related gene 1;(source:Araport11)
AT1G16930.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G16940.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G16890.1	protein_coding	ubiquitin-conjugating enzyme 36	UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.	ubiquitin-conjugating enzyme 36;(source:Araport11)
AT1G17010.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G16830.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G16950.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G16900.1	protein_coding	Alg9-like mannosyltransferase family	Encodes the Arabidopsis ortholog of the yeast/human ALG9 catalyzing the luminal addition of two alpha-1,2 Man residues in assembling Glc3Man9GlcNAc2.	Alg9-like mannosyltransferase family;(source:Araport11)
AT1G16820.1	protein_coding	vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related		vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein;(source:Araport11)
AT1G16810.1	protein_coding			7-dehydrocholesterol reductase-like protein;(source:Araport11)
AT1G17000.1	protein_coding	trehalose-phosphatase/synthase 3	Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.	trehalose-phosphatase/synthase 3;(source:Araport11)
AT1G16840.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G17100.1	protein_coding	SOUL heme-binding family protein		SOUL heme-binding family protein;(source:Araport11)
AT1G17080.1	protein_coding	Ribosomal protein L18ae family		Ribosomal protein L18ae family;(source:Araport11)
AT1G17070.1	protein_coding	GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain	Encodes a homologue of spliceosome disassembly factor NTR1. Required for correct expression and splicing of DOG1, a regulator of seed dormancy. The mRNA is cell-to-cell mobile.	GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein;(source:Araport11)
AT1G17060.1	protein_coding	cytochrome p450 72c1	Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls.	cytochrome p450 72c1;(source:Araport11)
AT1G55370.1	protein_coding	NDH-dependent cyclic electron flow 5		NDH-dependent cyclic electron flow 5;(source:Araport11)
AT1G13940.1	protein_coding	Plant protein of unknown function (DUF863)		T-box transcription factor, putative (DUF863);(source:Araport11)
AT1G13950.1	protein_coding	eukaryotic elongation factor 5A-1	Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced.	eukaryotic elongation factor 5A-1;(source:Araport11)
AT1G13960.1	protein_coding	WRKY DNA-binding protein 4	Encodes WRKY DNA-binding protein 4 (WRKY4).	WRKY DNA-binding protein 4;(source:Araport11)
AT1G14020.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G13930.1	protein_coding		Involved in response to salt stress.  Knockout mutants are hypersensitive to salt stress. The mRNA is cell-to-cell mobile.	oleosin-B3-like protein;(source:Araport11)
AT1G14030.1	protein_coding	Rubisco methyltransferase family protein	Encodes a lysine methyltransferase whose main soluble physiological substrates are chloroplastic fructose 1,6-bisphosphate aldolases, FBA1, FBA2, and FBA3.  Lysines near the C-terminal end of the target proteins are trimethylated.	Rubisco methyltransferase family protein;(source:Araport11)
AT1G13990.1	protein_coding			plant/protein;(source:Araport11)
AT1G13980.1	protein_coding	sec7 domain-containing protein	Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions. BFA inhibits GNOM trafficking and BFA resistant lines are more resistant to cold stress.	sec7 domain-containing protein;(source:Araport11)
AT1G13970.1	protein_coding	Protein of unknown function (DUF1336)		beta-hexosaminidase (DUF1336);(source:Araport11)
AT1G14070.1	protein_coding	fucosyltransferase 7	member of Xyloglucan fucosyltransferase family	fucosyltransferase 7 (FUT7); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: stem, cauline leaf, root; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: fucosyltransferase 6 (TAIR:AT1G14080.1)
AT1G14000.1	protein_coding	VH1-interacting kinase	Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling. The mRNA is cell-to-cell mobile.	VH1-interacting kinase;(source:Araport11)
AT1G14080.1	protein_coding	fucosyltransferase 6	Encodes an alpha-(1,2)-fucosyltransferase.	fucosyltransferase 6;(source:Araport11)
AT1G14250.1	protein_coding	GDA1/CD39 nucleoside phosphatase family protein		GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11)
AT1G14010.1	protein_coding	emp24/gp25L/p24 family/GOLD family protein		emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT1G13920.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT1G14040.1	protein_coding	EXS (ERD1/XPR1/SYG1) family protein	Encodes a PHO1 homologue that is upregulated in response to Zn deficiency and is involved in Pi homeostasis in response to Zn deficiency. The mRNA is cell-to-cell mobile.	EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT1G42350.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-102 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G08840.1	protein_coding	DNA replication helicase, putative	Encodes a homolog of human and yeast DNA2. Mutants have increased sensitivity to DNA damage stress.	DNA replication helicase;(source:Araport11)
AT1G76900.1	protein_coding	tubby like protein 1	Member of plant TLP family. Contains terminal F-box domain, interacts with ASK proteins. Tethered to the PM.	tubby like protein 1;(source:Araport11)
AT1G34420.1	protein_coding	leucine-rich repeat transmembrane protein kinase family protein		leucine-rich repeat transmembrane protein kinase family protein;(source:Araport11)
AT1G34440.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G34470.1	protein_coding	Protein of unknown function (DUF803)		magnesium transporter, putative (DUF803);(source:Araport11)
AT1G34430.1	protein_coding	2-oxoacid dehydrogenases acyltransferase family protein		2-oxoacid dehydrogenases acyltransferase family protein;(source:Araport11)
AT1G34330.1	pseudogene		Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of Peroxidase superfamily protein;(source:Araport11)
AT1G34340.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G34480.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G34410.1	protein_coding	auxin response factor 21		auxin response factor 21;(source:Araport11)
AT1G60460.1	protein_coding		Encodes a structural homolog of the archaeal topo VIB subunit that forms a complex with the two Arabidopsis thaliana SPO11 orthologs required for meiotic DSB formation (SPO11-1 and SPO11-2) and is essential for meiotic DSB formation.	hypothetical protein;(source:Araport11)
AT1G42700.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G42705.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.3e-66 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G42718.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 5.4e-130 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT1G42710.1	protein_coding	General transcription factor 2-related zinc finger protein		General transcription factor 2-related zinc finger protein;(source:Araport11)
AT1G61810.1	protein_coding	beta-glucosidase 45		beta-glucosidase 45;(source:Araport11)
AT1G62050.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT1G61800.1	protein_coding	glucose-6-phosphate/phosphate translocator 2	glucose6-Phosphate/phosphate transporter 2. Expression is upregulated in the shoot of cax1/cax3 mutant. The mRNA is cell-to-cell mobile.	glucose-6-phosphate/phosphate translocator 2;(source:Araport11)
AT1G21610.1	protein_coding	wound-responsive family protein		wound-responsive family protein;(source:Araport11)
AT1G21600.1	protein_coding	plastid transcriptionally active 6	Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.	plastid transcriptionally active 6;(source:Araport11)
AT1G21620.1	protein_coding	pumilio 20	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 20;(source:Araport11)
AT1G53140.1	protein_coding	Dynamin related protein 5A	Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis.	Dynamin related protein 5A;(source:Araport11)
AT1G43886.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.3e-165 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT1G43890.1	protein_coding	RAB GTPASE HOMOLOG B18	ras-related small GTPase	RAB GTPASE HOMOLOG B18;(source:Araport11)
AT1G74910.1	protein_coding	ADP-glucose pyrophosphorylase family protein	KONJAC1 is imilar to sugar pyrophosphorylases but has an insertion of 2 AA in the pyrophosphorylase consensus motif that is highly conserved in GMPPs. It lacks GDP-mannose pyrophosphorylase activity but can simulate the GDP-mannose pyrophosphorylase activity of VTC1.	ADP-glucose pyrophosphorylase family protein;(source:Araport11)
AT1G74900.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G74920.1	protein_coding	aldehyde dehydrogenase 10A8	ALDH10A8 encodes a protein that has not been functionally characterized, but it is similar to an Arabidopsis protein that has betaine aldehyde dehydrogenase and aminoaldehyde dehydrogenase activity. ALDH10A8 localizes to leucoplasts. aldh10a8 mutant plants are more susceptible to NaCl and dehydration stress.	aldehyde dehydrogenase 10A8;(source:Araport11)
AT1G74950.1	protein_coding	TIFY domain/Divergent CCT motif family protein		TIFY domain/Divergent CCT motif family protein;(source:Araport11)
AT1G75020.1	protein_coding	lysophosphatidyl acyltransferase 4		lysophosphatidyl acyltransferase 4;(source:Araport11)
AT1G75000.1	protein_coding	GNS1/SUR4 membrane protein family	ELO family protein.	GNS1/SUR4 membrane protein family;(source:Araport11)
AT1G74940.1	protein_coding	Protein of unknown function (DUF581)		cyclin-dependent kinase, putative (DUF581);(source:Araport11)
AT1G74830.1	protein_coding	Protein of unknown function, DUF593		myosin-binding protein, putative (Protein of unknown function, DUF593);(source:Araport11)
AT1G75130.1	protein_coding	cytochrome P450, family 721, subfamily A, polypeptide 1	member of CYP721A	cytochrome P450, family 721, subfamily A, polypeptide 1;(source:Araport11)
AT1G74820.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT1G74890.1	protein_coding	response regulator 15	Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.	response regulator 15;(source:Araport11)
AT1G74970.1	protein_coding	ribosomal protein S9	ribosomal protein S9, nuclear encoded component of the chloroplast ribosome	ribosomal protein S9;(source:Araport11)
AT1G74850.1	protein_coding	plastid transcriptionally active 2	Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.	plastid transcriptionally active 2;(source:Araport11)
AT1G75010.1	protein_coding	GTP binding	Encodes ARC3 (Accumulation and Replication of Chloroplast 3), a chloroplast division factor functioning in the initiation of chloroplast division.  ARC3 is a chimera of the prokaryotic FtsZ and part of the eukaryotic phosphatidylinositol-4-phosphate 5-kinase (PIP5K).  Located on the outer surface of the chloroplast in a ring-like structure at the early stage of chloroplast division.  The arc3 mutant has a small number of abnormally large chloroplasts in the cell.	GTP binding protein;(source:Araport11)
AT1G74930.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. The mRNA is cell-to-cell mobile.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G74880.1	protein_coding	NAD(P)H:plastoquinone dehydrogenase complex subunit O	Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	NAD(P)H:plastoquinone dehydrogenase complex subunit O;(source:Araport11)
AT1G74840.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT1G74960.1	protein_coding	fatty acid biosynthesis 1	Encodes a plastidic beta-ketoacyl-ACP synthase II, involved in fatty acid elongation from 16:0-ACP to 18:0-ACP. Homozygous knock-out mutants are embryo lethal, indicating early embryo development is sensitive to elevated 16:0.	fatty acid biosynthesis 1;(source:Araport11)
AT1G74870.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G74990.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G74190.1	protein_coding	receptor like protein 15		receptor like protein 15;(source:Araport11)
AT1G58370.1	protein_coding	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	Encodes a protein with xylanase activity.	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein;(source:Araport11)
AT1G15415.1	protein_coding		The protein encoded by this gene was identified  as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins.  Encodes protein phosphatase 2A (PP2A) B'gamma subunit.  Targeted to nucleus and cytosol.	late embryogenesis abundant-like protein;(source:Araport11)
AT1G15410.1	protein_coding	aspartate-glutamate racemase family		aspartate-glutamate racemase family;(source:Araport11)
AT1G15430.1	protein_coding	Protein of unknown function (DUF1644)		hypothetical protein (DUF1644);(source:Araport11)
AT1G15440.1	protein_coding	periodic tryptophan protein 2	Encodes a nucleolar protein that is a ribosome biogenesis co-factor. Mutants display aberrant RNA processing and female gametophyte development.	periodic tryptophan protein 2;(source:Araport11)
AT1G15460.1	protein_coding	HCO3- transporter family	Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.	HCO3- transporter family;(source:Araport11)
AT1G15470.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	WD40 nucleoplasmic shuttling protein that positively regulates the Abscisic acid (ABA) response by interacting with and maintaining the stability of ABI5 in the nucleus. Nuclear export of XIW1 is XPO1-dependent. Involved in regulating seed germination, primary root growth, and drought stress resistance.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G15480.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	PPR motif containing protein. Found in mitochondria. Mutants flower early and have reduced levels of the ABI5, a regulator of FLC expression.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G15490.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G15060.1	protein_coding	Uncharacterised conserved protein UCP031088, alpha/beta hydrolase		alpha/beta hydrolase family protein;(source:Araport11)
AT1G63390.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		flavin containing monooxygenase FMO GS-OX-like protein;(source:Araport11)
AT1G63370.1	protein_coding	Flavin-binding monooxygenase family protein		Flavin-binding monooxygenase family protein;(source:Araport11)
AT1G63360.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G63380.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G48630.1	protein_coding	receptor for activated C kinase 1B	Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1B has no phenotype on its own and probably acts redundantly with RACK1A and RACK1C.	receptor for activated C kinase 1B;(source:Araport11)
AT1G18140.1	protein_coding	laccase 1	putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).	laccase 1;(source:Araport11)
AT1G18080.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene.  It is a scaffold protein that acts downstream of and is phosphorylated by WNK8 in the glucose responsiveness and flowering pathways . Knockout mutants show insensitivity to gibberellin in GA-induced seed germination.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G18220.1	protein_coding	purine permease 9	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 9;(source:Araport11)
AT1G18130.1	protein_coding	Class II aaRS and biotin synthetases superfamily protein		Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT1G18120.1	pseudogene			pseudogene of GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT1G18230.1	pseudogene			pseudogene of protein kinase family protein;(source:Araport11)
AT1G18150.1	protein_coding	Protein kinase superfamily protein	Encodes mitogen-activated protein kinase 8 (MPK8).  MPK8 connects protein phosphorylation, Ca2+, and ROS in the wound-signaling pathway.	Protein kinase superfamily protein;(source:Araport11)
AT1G18050.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein		SWAP/surp RNA-binding domain protein;(source:Araport11)
AT1G18060.1	protein_coding			microbial collagenase;(source:Araport11)
AT1G18170.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein		FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT1G18090.1	protein_coding	5'-3' exonuclease family protein		5-3 exonuclease family protein;(source:Araport11)
AT1G18160.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G18180.1	protein_coding	Protein of unknown function (DUF1295)		3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295);(source:Araport11)
AT1G18070.1	protein_coding	Translation elongation factor EF1A/initiation factor IF2gamma family protein		Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT1G18190.1	protein_coding	golgin candidate 2	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast.  A fluorescently-tagged version of GC2 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (508–668 aa) portion of the protein.	golgin Putative 2;(source:Araport11)
AT1G18200.1	protein_coding	RAB GTPase homolog A6B		Rab GTPase-like A1I protein;(source:Araport11)
AT1G18100.1	protein_coding	PEBP (phosphatidylethanolamine-binding protein) family protein	Encodes a member of the FT and TFL1 family of phosphatidylethanolamine-binding proteins. It is expressed in seeds and up-regulated in response to ABA. Loss of function mutants show decreased rate of germination in the presence of ABA. ABA dependent regulation is mediated by both ABI3 and ABI5. ABI5 promotes MFT expression, primarily in the radicle-hypocotyl transition zone and ABI3 suppresses it in the seed.	PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11)
AT1G18240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.2e-154 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G18210.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT1G10590.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G10610.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G10600.1	protein_coding	associated molecule with the SH3 domain of STAM 2		associated molecule with the SH3 domain of STAM 2;(source:Araport11)
AT1G43320.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G44920.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G44940.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G44910.1	protein_coding	pre-mRNA-processing protein 40A	Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold  for RNA processing machineries.	pre-mRNA-processing protein 40A;(source:Araport11)
AT1G44960.1	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT1G65090.1	protein_coding			nucleolin;(source:Araport11)
AT1G16190.1	protein_coding	Rad23 UV excision repair protein family	Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.	Rad23 UV excision repair protein family;(source:Araport11)
AT1G48830.1	protein_coding	Ribosomal protein S7e family protein		Ribosomal protein S7e family protein;(source:Araport11)
AT1G48870.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G48860.1	protein_coding	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	5-enolpyruvylshikimate-3-phosphate synthase involved in shikimic acid biosynthesis.	RNA 3-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta;(source:Araport11)
AT1G61665.1	pseudogene			pseudogene of S-locus lectin protein kinase family protein;(source:Araport11)
AT1G01180.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G01190.1	protein_coding	cytochrome P450, family 78, subfamily A, polypeptide 8		cytochrome P450, family 78, subfamily A, polypeptide 8;(source:Araport11)
AT1G01140.1	protein_coding	CBL-interacting protein kinase 9	Encodes a CBL-interacting protein kinase with similarity to SOS2	CBL-interacting protein kinase 9;(source:Araport11)
AT1G01130.1	protein_coding			CBL-interacting Serine/Threonine-kinase;(source:Araport11)
AT1G01150.1	protein_coding	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain		Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein;(source:Araport11)
AT1G01160.1	protein_coding	GRF1-interacting factor 2	Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA	GRF1-interacting factor 2;(source:Araport11)
AT1G01170.1	protein_coding	Protein of unknown function (DUF1138)		ozone-responsive stress-like protein (DUF1138);(source:Araport11)
AT1G05490.1	protein_coding	chromatin remodeling 31	Involved in gene silencing. Locus-specific regulator of 24nt-siRNA expression, works together with CLSY1-4 as the master regulators of essentially all Pol-IV-dependent 24nt-siRNAs.	chromatin remodeling 31;(source:Araport11)
AT1G05560.1	protein_coding	UDP-glucosyltransferase 75B1	A UDP-glucose transferase localized in the phragmoplast.  It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves, flowers, and siliques.	UDP-glucosyltransferase 75B1;(source:Araport11)
AT1G05500.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	Encodes a endomembrane-localized synaptotagmin.  Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G05510.1	protein_coding	Protein of unknown function (DUF1264)	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	naphthalene 1,2-dioxygenase subunit alpha (DUF1264);(source:Araport11)
AT1G05520.1	protein_coding	Sec23/Sec24 protein transport family protein		Sec23/Sec24 protein transport family protein;(source:Araport11)
AT1G05530.1	protein_coding	UDP-glucosyl transferase 75B2	Encodes a protein with glucosyltransferase activity with high sequence homology to UGT1 (AT1G05560). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT2 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose.	UDP-glucosyl transferase 75B2;(source:Araport11)
AT1G05540.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT1G05550.1	protein_coding	Protein of unknown function (DUF295)	DUF295 domain protein of unknown function. Expressed in ovule integuments and nucellus.	hypothetical protein (DUF295);(source:Araport11)
AT1G21790.1	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G21810.1	protein_coding	Plant protein of unknown function (DUF869)	Encodes a protein that localizes at motile vesicle-like small compartments in differentiating xylem cells that is associated with microtubule plus-ends.  VETH-positive compartments are unlikely to be elements in conventional endomembrane trafficking pathways.  It can associate with COG2, and together these two proteins co-localize with the EXO70A1 exocyst subunit, tethering EXO70A1 to compartments associated with cortical microtubules.	filament-like protein (DUF869);(source:Araport11)
AT1G21830.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G21840.1	protein_coding	urease accessory protein F	Encodes a urease accessory protein which is essential for the activation of plant urease.	urease accessory protein F;(source:Araport11)
AT1G23050.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G23040.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G08340.1	protein_coding	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain		Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein;(source:Araport11)
AT1G08320.1	protein_coding	bZIP transcription factor family protein		bZIP transcription factor family protein;(source:Araport11)
AT1G08530.1	protein_coding			chitinase-like protein;(source:Araport11)
AT1G08540.1	protein_coding	RNApolymerase sigma subunit 2	Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.	RNApolymerase sigma subunit 2;(source:Araport11)
AT1G09980.1	protein_coding	Putative serine esterase  family protein		Putative serine esterase family protein;(source:Araport11)
AT1G12100.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G12110.1	protein_coding	nitrate transporter 1.1	Encodes NRT1.1 (CHL1), a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Expressed in lateral roots. Involved in nitrate signaling which enables the plant root system to detect and exploit nitrate-rich soil patches. Comparing to the wild type, the mutant displays a strongly decreased lateral root proliferation phenotype in nitrate rich patches on growth medium. Affects flowering time via interaction with the FLC dependent flowering pathway to influence its target gene FT.	nitrate transporter 1.1;(source:Araport11)
AT1G12090.1	protein_coding	extensin-like protein	extensin-like protein (ELP)	extensin-like protein;(source:Araport11)
AT1G12080.1	protein_coding	Vacuolar calcium-binding protein-related		Vacuolar calcium-binding protein-like protein;(source:Araport11)
AT1G11130.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes an atypical receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root but whose kinase activity is not essential for its function in vivo. Regulates expression of GLABRA2, CAPRICE, WEREWOLF, and ENHANCER OF GLABRA3. Required  for floral organ shape, the development of the outer integument of  ovules, and stem development. Regulates cell shape and cell division planes  in the L2 layer of floral meristems and the L1-derived outer  integument of ovules. Controls specification of epidermal root hairs. Participates in the coordination of cell morphogenesis  between cell layers during floral development.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G19140.1	protein_coding			ubiquinone biosynthesis COQ9-like protein;(source:Araport11)
AT1G19290.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G06430.1	protein_coding	FTSH protease 8	encodes a FtsH protease that is localized to the chloroplast	FTSH protease 8;(source:Araport11)
AT1G06290.1	protein_coding	acyl-CoA oxidase 3	Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids. The mRNA is cell-to-cell mobile.	acyl-CoA oxidase 3;(source:Araport11)
AT1G68380.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G68370.1	protein_coding	Chaperone DnaJ-domain superfamily protein	DnaJ-like protein with homology to coiled coils found in cytoskeleton-interacting proteins.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G47705.1	pseudogene			pseudogene of F-box/RNI/FBD-like domain protein;(source:Araport11)
AT1G47730.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G47710.1	protein_coding	Serine protease inhibitor (SERPIN) family protein		Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT1G47720.1	protein_coding	Primosome PriB/single-strand DNA-binding	Encodes an organellar single-strand DNA binding protein, located in mitochondria, controls the stoichiometry of alternative mitochondrial DNA forms generated by homologous recombination.	Primosome PriB/single-strand DNA-binding protein;(source:Araport11)
AT1G48095.1	protein_coding			nucleic acid-binding/zinc ion-binding protein;(source:Araport11)
AT1G48060.1	protein_coding	F-box and associated interaction domains-containing protein		F-box/associated interaction domain protein;(source:Araport11)
AT1G48050.1	protein_coding	Ku80 family protein	Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of  the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.	Ku80 family protein;(source:Araport11)
AT1G48040.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G48020.1	protein_coding	pectin methylesterase inhibitor 1	Pectin methylesterase inhibitor AtPMEI1. Inactivates AtPPME1 in vitro. Localized to pollen tube cell tip.	pectin methylesterase inhibitor 1;(source:Araport11)
AT1G48070.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT1G48030.1	protein_coding	mitochondrial lipoamide dehydrogenase 1	Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light.	mitochondrial lipoamide dehydrogenase 1;(source:Araport11)
AT1G48090.1	protein_coding	calcium-dependent lipid-binding family protein		calcium-dependent lipid-binding family protein;(source:Araport11)
AT1G59970.1	protein_coding	Matrixin family protein		Matrixin family protein;(source:Araport11)
AT1G26820.1	protein_coding	ribonuclease 3	Encodes ribonuclease RNS3.	ribonuclease 3;(source:Araport11)
AT1G26830.1	protein_coding	cullin 3	Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin   protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.	cullin 3;(source:Araport11)
AT1G59700.1	protein_coding	glutathione S-transferase TAU 16	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). The mRNA is cell-to-cell mobile.	glutathione S-transferase TAU 16;(source:Araport11)
AT1G59710.1	protein_coding	Protein of unknown function (DUF569)		actin cross-linking protein (DUF569);(source:Araport11)
AT1G59720.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G78480.1	protein_coding	Prenyltransferase family protein		Prenyltransferase family protein;(source:Araport11)
AT1G78470.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT1G78460.1	protein_coding	SOUL heme-binding family protein		SOUL heme-binding family protein;(source:Araport11)
AT1G78450.1	protein_coding	SOUL heme-binding family protein		SOUL heme-binding family protein;(source:Araport11)
AT1G09290.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G37063.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);transposase-related, weak similarity to Tam3-transposase (Antirrhinum majus) GI:16064, PIR|A39652 Hobo element transposase HFL1 (Drosophila melanogaster);(source:TAIR10)
AT1G37057.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 7.8e-25 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G37060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-248 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G36975.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.4e-171 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G37030.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.1e-17 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G37040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 2.3e-110 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT1G37070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.5e-177 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G37035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.6e-50 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G77830.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G77840.1	protein_coding	Translation initiation factor IF2/IF5		Translation initiation factor IF2/IF5;(source:Araport11)
AT1G77810.1	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT1G77820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, endonuclease/exonuclease/phosphatase family protein, contains similarity to reverse transcriptase GI:976278 from (Arabidopsis thaliana);(source:TAIR10)
AT1G35050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.8e-61 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT1G35040.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G35030.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G35090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19300.1);(source:TAIR10)
AT1G35080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42490.1);(source:TAIR10)
AT1G35060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.9e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G36790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.7e-38 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G36850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.2e-90 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT1G36800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.3e-108 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G36810.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G36795.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.9e-245 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G36840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G36880.1	pseudogene			pseudogene of FAR1-related sequence 5;(source:Araport11)
AT1G53640.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G53620.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G53530.1	protein_coding	Peptidase S24/S26A/S26B/S26C family protein	Mitochondrial ATP-independent protease	Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT1G53650.1	protein_coding	CTC-interacting domain 8	RNA-binding protein, putative, similar to RNA-binding protein GB:AAA86641 GI:1174153 from (Arabidopsis thaliana).Contains PAB2 domain which facilitates binding to PABC proteins.	CTC-interacting domain 8;(source:Araport11)
AT1G53610.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G53630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase GB:AAD17398 GI:4335720 from (Arabidopsis thaliana);(source:TAIR10)
AT1G53510.1	protein_coding	mitogen-activated protein kinase 18	Member of MAP Kinase familly. Target of MPKKK20 phosphorylation. Mutant root growth is sensitive oryzalin and suggestive of a role in signaling during microtubule organization.	mitogen-activated protein kinase 18;(source:Araport11)
AT1G53490.1	protein_coding	RING/U-box superfamily protein	Encodes HEI10, a RING finger-containing protein. HEI10 belongs to a group of proteins well conserved among species known as ZMM. Required for class I crossover formation. The mRNA is cell-to-cell mobile.	RING/U-box superfamily protein;(source:Araport11)
AT1G53480.1	protein_coding	mto 1 responding down 1	Encodes MRD1 (mto 1 responding down).  Down-regulated in mto1-1 mutant that over-accumulates soluble methionine.	mto 1 responding down 1;(source:Araport11)
AT1G53600.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G53500.1	protein_coding	NAD-dependent epimerase/dehydratase family protein	encodes a putative NDP-L-rhamnose synthase, an enzyme required for the synthesis of the pectin rhamnogalacturonan I, the major component of Arabidopsis mucilage. Gene is involved in seed coat mucilage cell development. Mutant analyses suggest that MUM4 is required for complete mucilage synthesis, cytoplasmic rearrangement and seed coat development.	NAD-dependent epimerase/dehydratase family protein;(source:Araport11)
AT1G53570.1	protein_coding	mitogen-activated protein kinase kinase kinase 3	Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK3 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens.	mitogen-activated protein kinase kinase kinase 3;(source:Araport11)
AT1G53590.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G53550.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G53580.1	protein_coding	glyoxalase II  3	Mononuclear Fe(II)-containing member of  the b-lactamase fold superfamily. ETHE1 is homodimeric in  solution, exhibits low-level esterase activity, and specifically binds  a single Fe(II) atom in the active site.	glyoxalase II 3;(source:Araport11)
AT1G53420.1	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G53560.1	protein_coding	Ribosomal protein L18ae family		Ribosomal protein L18ae family;(source:Araport11)
AT1G53540.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G53520.1	protein_coding	Chalcone-flavanone isomerase family protein	Encodes a plastid stroma localized fatty acid binding protein involved in fatty acid metabolism.	Chalcone-flavanone isomerase family protein;(source:Araport11)
AT1G47465.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.7e-17 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G47450.1	protein_coding	Protein of unknown function (DUF784)		prolamin-like protein (DUF784);(source:Araport11)
AT1G47420.1	protein_coding	succinate dehydrogenase 5	predicted to encode subunit 5 of mitochondrial complex II and to participate in the respiratory chain	succinate dehydrogenase 5;(source:Araport11)
AT1G47410.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G47430.1	pseudogene			pseudogene of Ribonuclease H-like superfamily protein;(source:Araport11)
AT1G47435.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30%25 identity and 5.0e-49 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus};(source:TAIR10)
AT1G47440.1	pseudogene			pseudogene of S-locus related protein SLR1;(source:Araport11)
AT1G47460.1	pseudogene			pseudogene of S-locus related protein SLR1;(source:Araport11)
AT1G33855.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.7e-18 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G33850.1	protein_coding	Ribosomal protein S19 family protein		Ribosomal protein S19 family protein;(source:Araport11)
AT1G33835.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.9e-12 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT1G33830.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G33820.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G33817.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.1e-100 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G33813.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.8e-39 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G33960.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G33840.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT1G33950.1	protein_coding	Avirulence induced gene (AIG1) family protein		Avirulence induced gene (AIG1) family protein;(source:Araport11)
AT1G33860.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G29730.1	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G62650.1	pseudogene			pseudogene of P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G62460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.0e-38 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT1G62440.1	protein_coding	leucine-rich repeat/extensin 2	encodes a paralog of LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) which acts synergistically with LRX1 in root hair cell morphogenesis.	leucine-rich repeat/extensin 2;(source:Araport11)
AT1G62450.1	protein_coding	Immunoglobulin E-set superfamily protein		Immunoglobulin E-set superfamily protein;(source:Araport11)
AT1G62640.1	protein_coding	3-ketoacyl-acyl carrier protein synthase III	3-ketoacyl-acyl carrier protein synthase III (KAS III)	3-ketoacyl-acyl carrier protein synthase III;(source:Araport11)
AT1G62660.1	protein_coding	Glycosyl hydrolases family 32 protein		Glycosyl hydrolases family 32 protein;(source:Araport11)
AT1G41743.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.9e-264 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G41795.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.6e-264 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G41746.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.3e-09 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G41770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33064.1);(source:TAIR10)
AT1G41825.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-98 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT1G41755.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT1G41803.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.1e-256 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT1G41797.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.2e-119 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G41790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0.00017 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G41775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-260 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G41760.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.1e-11 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi);(source:TAIR10)
AT1G41750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32903.1);(source:TAIR10)
AT1G59510.1	protein_coding	Carbohydrate-binding protein	Encodes CF9.	Carbohydrate-binding protein;(source:Araport11)
AT1G59520.1	protein_coding	CW7	Encodes CW7.	CW7;(source:Araport11)
AT1G59530.1	protein_coding	basic leucine-zipper 4		basic leucine-zipper 4;(source:Araport11)
AT1G59540.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a kinesin-like protein.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G59560.1	protein_coding	E3 Ubiquitin ligase family protein	Encodes a chloroplast-localized putative RING-type ubiquitin E3 ligase.	E3 Ubiquitin ligase family protein;(source:Araport11)
AT1G59550.1	protein_coding	UBX domain-containing protein	This locus is annotated as a protein-coding gene in TAIR10. Based on communication with Jean-Luc GALLOIS (April 2013), this gene is re-annotated as a UBX domain-containing pseudogene. Note that the Map Detail Image on the locus detial page and in GBrowse will not be updated until after the next genome release.	UBX domain-containing protein;(source:Araport11)
AT1G59500.1	protein_coding	Auxin-responsive GH3 family protein	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.	Auxin-responsive GH3 family protein;(source:Araport11)
AT1G55400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1);(source:TAIR10)
AT1G55580.1	protein_coding	GRAS family transcription factor	Encodes a member of the GRAS family of putative transcriptional regulators. It is involved in the initiation of axillary meristems during both the vegetative and reproductive growth phases and functions upstream of REV and AXR1 in the regulation of shoot branching.	GRAS family transcription factor;(source:Araport11)
AT1G14530.1	protein_coding	Protein of unknown function (DUF1084)		tobamovirus multiplication-like protein (DUF1084);(source:Araport11)
AT1G14660.1	protein_coding	Na+/H+ exchanger 8	member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification.	Na+/H+ exchanger 8;(source:Araport11)
AT1G14520.1	protein_coding	myo-inositol oxygenase 1	Encodes MIOX1.  Belongs to  myo-inositol oxygenase gene family.	myo-inositol oxygenase 1;(source:Araport11)
AT1G14680.1	protein_coding			early endosome antigen;(source:Araport11)
AT1G14540.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT1G14685.1	protein_coding	basic pentacysteine 2	Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.	basic pentacysteine 2;(source:Araport11)
AT1G14550.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT1G14670.1	protein_coding	Endomembrane protein 70 protein family		Endomembrane protein 70 protein family;(source:Araport11)
AT1G30560.1	protein_coding	Major facilitator superfamily protein	Encodes a member of the phosphate starvation-induced glycerol-3-phosphate permease gene family: AT3G47420(G3Pp1), AT4G25220(G3Pp2), AT1G30560(G3Pp3), AT4G17550(G3Pp4) and AT2G13100(G3Pp5).	Major facilitator superfamily protein;(source:Araport11)
AT1G30760.1	protein_coding	FAD-binding Berberine family protein	Encodes a BBE-like enzyme that acts in monolignol metabolism by catalyzing the oxidation of aromatic allylic alcohols, such as coumaryl-, sinapyl-, and coniferyl alcohol, to the corresponding aldehydes. The mRNA is cell-to-cell mobile.	FAD-binding Berberine family protein;(source:Araport11)
AT1G77680.1	protein_coding	Ribonuclease II/R family protein		Ribonuclease II/R family protein;(source:Araport11)
AT1G77420.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G47940.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G69610.1	protein_coding	Protein of unknown function (DUF1666)		zinc finger FYVE domain protein, putative (DUF1666);(source:Araport11)
AT1G69660.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT1G69650.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT1G69640.1	protein_coding	sphingoid base hydroxylase 1	Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.	sphingoid base hydroxylase 1;(source:Araport11)
AT1G69630.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G69620.1	protein_coding	ribosomal protein L34	putative 60S ribosomal protein L34 The mRNA is cell-to-cell mobile.	ribosomal protein L34;(source:Araport11)
AT1G08130.1	protein_coding	DNA ligase 1	Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways.  In addition, it is an important component of the active DNA demethylation machinery and is indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.	DNA ligase 1;(source:Araport11)
AT1G08150.1	protein_coding	Cation/hydrogen exchanger family protein	member of Putative Na+/H+ antiporter family	Cation/hydrogen exchanger family protein;(source:Araport11)
AT1G08170.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT1G56180.1	protein_coding		VIR3 encodes a putative chloroplast metalloprotease that is localized to the thylakoid membrane. The vir3-1 mutant came out of a genetic suppressor screen of the Arabidopsis variegation mutant yellow variegated (var2). The suppressor displayed an additional virescent phenotype, i.e. the bases of young leaves were yellow, and leaf color gradually turned to green toward the leaf tips.	ATP-dependent zinc metalloprotease;(source:Araport11)
AT1G56170.1	protein_coding	nuclear factor Y, subunit C2	Encodes a protein with similarity to a subunit of  the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues. Involved in the regulation of response to nutrient levels.	nuclear factor Y, subunit C2;(source:Araport11)
AT1G56140.1	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G55970.1	protein_coding	histone acetyltransferase of the CBP family 4	HAC4 is most likely to  be an expressed pseudogene that lacks HAT function. there is a  single nucleotide deletion in both the HAC4 genomic and  cDNA sequences relative to its homologs. The resulting  frameshift within the open reading frame causes a  stop codon to occur within the predicted acetyltransferase  catalytic domain.	histone acetyltransferase of the CBP family 4;(source:Araport11)
AT1G56160.1	protein_coding	myb domain protein 72	Encodes a member of the R2R3 transcription factor gene family that is involved in mediating induced systemic resistance. Genetic analysis of loss of function mutants and overexpressor lines indicates MYB72 is necessary but not sufficient for ISR.Interacts in vivo with EIL3.	myb domain protein 72;(source:Araport11)
AT1G56150.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G66270.1	protein_coding	Glycosyl hydrolase superfamily protein	BGLU21 encodes a beta-glucosidase that has a high level of activity against the naturally occuring secondary metabolite scopolin. Recombinant BGLU21 produced in insect cells shows lower levels of activity using the structurally similar substrates esculin (33%) and 4-MU-glucoside (9%).    BGLU21 is glycosylated in planta and has a C-terminal ER retention signal. Transcript analysis as well as protein extraction and western blotting from various plant organs suggest that BGLU21 is only present in roots and seedlings. Transcript levels increase in response to cold, auxin (2,4-D), and methyl jasmonate treatments.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G13340.1	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT1G13470.1	protein_coding	Protein of unknown function (DUF1262)		hypothetical protein (DUF1262);(source:Araport11)
AT1G13390.1	protein_coding			translocase subunit seca;(source:Araport11)
AT1G13480.1	protein_coding	Protein of unknown function (DUF1262)		hypothetical protein (DUF1262);(source:Araport11)
AT1G13410.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G13400.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Along with JAG, it is involved in stamen and carpel development.  Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1, ap1-1 background.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G13450.1	protein_coding	Homeodomain-like superfamily protein	Encodes GT-1, a plant transcription factor that binds to one of the cis-acting elements, BoxII, which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G13420.1	protein_coding	sulfotransferase 4B	Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiments show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.	sulfotransferase 4B;(source:Araport11)
AT1G13350.1	protein_coding	Protein kinase superfamily protein	Paralog of PRP4KA.	Protein kinase superfamily protein;(source:Araport11)
AT1G13440.1	protein_coding	glyceraldehyde-3-phosphate dehydrogenase C2	The expression level of GAPC-2 is upregulated in Arabidopsis seedlings exposed to cadmium.	glyceraldehyde-3-phosphate dehydrogenase C2;(source:Araport11)
AT1G13370.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT1G13430.1	protein_coding	sulfotransferase 4C	Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4C is expressed in the roots and transcript levels rise in response to cytokinin treatment.	sulfotransferase 4C;(source:Araport11)
AT1G13460.1	protein_coding	Protein phosphatase 2A regulatory B subunit family protein	Encodes protein phosphatase 2A (PP2A) B'theta subunit.  Targeted to peroxisomes.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT1G13380.1	protein_coding	Protein of unknown function (DUF1218)		sodium/hydrogen exchanger (DUF1218);(source:Araport11)
AT1G02180.1	protein_coding	ferredoxin-related		ferredoxin-like protein;(source:Araport11)
AT1G02270.1	protein_coding	Calcium-binding endonuclease/exonuclease/phosphatase family		Calcium-binding endonuclease/exonuclease/phosphatase family;(source:Araport11)
AT1G02190.1	protein_coding	Fatty acid hydroxylase superfamily		Fatty acid hydroxylase superfamily;(source:Araport11)
AT1G02290.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G02205.1	protein_coding	Fatty acid hydroxylase superfamily	Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined.	Fatty acid hydroxylase superfamily;(source:Araport11)
AT1G02010.1	protein_coding	secretory 1A	member of KEULE Gene Family	secretory 1A;(source:Araport11)
AT1G02160.1	protein_coding	Cox19 family protein (CHCH motif)		Cox19 family protein (CHCH motif);(source:Araport11)
AT1G02210.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein		NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G02230.1	protein_coding	NAC domain containing protein 4		NAC domain containing protein 4;(source:Araport11)
AT1G02220.1	protein_coding	NAC domain containing protein 3		NAC domain containing protein 3;(source:Araport11)
AT1G02150.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G02260.1	protein_coding	Divalent ion symporter		Divalent ion symporter;(source:Araport11)
AT1G02280.1	protein_coding	translocon at the outer envelope membrane of chloroplasts 33	Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo.	translocon at the outer envelope membrane of chloroplasts 33;(source:Araport11)
AT1G02250.1	protein_coding	NAC domain containing protein 5	Encodes a member of the NAC family of transcription factors. ANAC005 contains sequences specifying both nuclear and plasma membrane targeting. Overexpression results in increased xylem differentiation suggesting ANAC005 promotes xylem formation.	NAC domain containing protein 5;(source:Araport11)
AT1G02170.1	protein_coding	metacaspase 1	Encodes a type I metacaspase. Two Arabidopsis metacaspases, AT1G02170 (MC1) and AT4G25110 (MC2)  antagonistically control programmed cell death in Arabidopsis. MC1 is a positive regulator of cell death and requires conserved caspase-like putative catalytic residues for its function. MC2 negatively regulates cell death. This function is independent of the putative catalytic residues.  A third type I Arabidopsis metacaspase is MC3 (AT5g64240).	metacaspase 1;(source:Araport11)
AT1G26970.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G27000.1	protein_coding	Protein of unknown function (DUF1664)		GRIP/coiled-coil protein, putative (DUF1664);(source:Araport11)
AT1G27250.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G27220.1	protein_coding	paired amphipathic helix repeat-containing protein		paired amphipathic helix repeat-containing protein;(source:Araport11)
AT1G27240.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G44080.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box SKIP23-like protein (DUF295);(source:Araport11)
AT1G44180.1	protein_coding	Peptidase M20/M25/M40 family protein		Peptidase M20/M25/M40 family protein;(source:Araport11)
AT1G44085.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT1G44090.1	protein_coding	gibberellin 20-oxidase 5	Encodes a gibberellin 20-oxidase.	gibberellin 20-oxidase 5;(source:Araport11)
AT1G44070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.6e-142 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT1G42560.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO9 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO10. The gene is expressed during early seedling growth, in cotyledon vascular system, in flowers (with strong expression in anthers) in siliques and fruit abscission zone; not expressed in roots, or in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT1G31400.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT1G31380.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT1G31390.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT1G31370.1	protein_coding	Ubiquitin-specific protease family C19-related protein		Ubiquitin-specific protease family C19-related protein;(source:Araport11)
AT1G65470.1	protein_coding	chromatin assembly factor-1 (FASCIATA1) (FAS1)	Chromatin Assembly Factor-1 (CAF-1) p150 subunit. Mutants have reduced heterochromatin content.  In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively.  Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.	chromatin assembly factor-1 (FASCIATA1) (FAS1);(source:Araport11)
AT1G73550.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G73560.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G33170.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G33220.1	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G33090.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G33200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to SAE1-S9-protein, blastp match of 28%25 identity and 4.2e-16 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa};(source:TAIR10)
AT1G33100.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G33190.1	pseudogene			pseudogene of auxin response factor 14;(source:Araport11)
AT1G33230.1	protein_coding	TMPIT-like protein		TMPIT-like protein;(source:Araport11)
AT1G33240.1	protein_coding	GT-2-like 1	Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone.  Regulates ploidy-dependent cell growth in trichome.	GT-2-like 1;(source:Araport11)
AT1G33160.1	pseudogene			pseudogene of actin 7;(source:Araport11)
AT1G33070.1	protein_coding	MADS-box family protein		MADS-box family protein;(source:Araport11)
AT1G33050.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G33060.1	protein_coding	NAC 014		NAC 014;(source:Araport11)
AT1G33080.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G05120.1	protein_coding	Helicase protein with RING/U-box domain		Helicase protein with RING/U-box domain-containing protein;(source:Araport11)
AT2G46480.1	protein_coding	galacturonosyltransferase 2	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase-like protein;(source:Araport11)
AT2G46500.1	protein_coding	phosphoinositide 4-kinase gamma 4	Phosphoinositide  kinase which undergo autophosphorylation and phosphorylate serine/threonine  residues of protein substrates. Contains phosphoinositide 3/4-kinase and ubiquitin-like domains. Phosphorylates PUFD1 and RPN10 in vitro.	phosphoinositide 4-kinase gamma 4;(source:Araport11)
AT2G46490.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G46510.1	protein_coding	ABA-inducible BHLH-type transcription factor	Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive.bHLH17 interacts with JAZ proteins, and functions redundantly with bHLH3, bHLH13 and bHLH14 to negatively regulate jasmonate responses.	ABA-inducible BHLH-type transcription factor;(source:Araport11)
AT2G46520.1	protein_coding	cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative		cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter;(source:Araport11)
AT2G46530.1	protein_coding	auxin response factor 11		auxin response factor 11;(source:Araport11)
AT2G27610.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G13335.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.7e-06 P-value blast match to GB:BAA84457 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902444|dbj|BAA84457.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT2G13350.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT2G39640.1	protein_coding	glycosyl hydrolase family 17 protein		glycosyl hydrolase family 17 protein;(source:Araport11)
AT2G39650.1	protein_coding	Protein of unknown function (DUF506) 		cruciferin (DUF506);(source:Araport11)
AT2G39660.1	protein_coding	botrytis-induced kinase1	Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection.  It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens.	botrytis-induced kinase1;(source:Araport11)
AT2G13710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mariner-like transposase family, has a 3.3e-55 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max);(source:TAIR10)
AT2G46890.1	protein_coding	Protein of unknown function (DUF1295)		3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295);(source:Araport11)
AT2G36610.1	protein_coding	homeobox protein 22	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	homeobox protein 22;(source:Araport11)
AT2G36620.1	protein_coding	ribosomal protein L24	RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020).	ribosomal protein L24;(source:Araport11)
AT2G36630.1	protein_coding	Sulfite exporter TauE/SafE family protein		Sulfite exporter TauE/SafE family protein;(source:Araport11)
AT2G16485.1	protein_coding	nucleic acid binding;zinc ion binding;DNA binding	Encodes NERD (Needed for RDR2-independent DNA methylation), a plant-specific GW repeat- and PHD finger-containing protein involved in siRNA-dependent DNA methylation.	GW repeat- and PHD finger-containing protein NERD;(source:Araport11)
AT2G31955.1	protein_coding	cofactor of nitrate reductase and xanthine dehydrogenase 2	COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria.	cofactor of nitrate reductase and xanthine dehydrogenase 2;(source:Araport11)
AT2G01130.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT2G15330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to reverse transcriptase;(source:TAIR10)
AT2G15325.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G06420.1	protein_coding	Domain of unknown function (DUF1985)		En/Spm-like transposon, putative (DUF1985);(source:Araport11)
AT2G01390.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G01400.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G01410.1	protein_coding	NHL domain-containing protein		NHL domain-containing protein;(source:Araport11)
AT2G01420.1	protein_coding	Auxin efflux carrier family protein	Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems.  It is involved in the maintenance of embryonic auxin gradients.  A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).	Auxin efflux carrier family protein;(source:Araport11)
AT2G37520.1	protein_coding	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain		Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein;(source:Araport11)
AT2G11465.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.4e-40 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G25565.1	protein_coding			C3HC4-type RING finger protein;(source:Araport11)
AT2G25570.1	protein_coding	binding		binding protein;(source:Araport11)
AT2G19430.1	protein_coding	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1	This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1;(source:Araport11)
AT2G19420.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G19440.1	protein_coding	O-Glycosyl hydrolases family 17 protein	Homolog of ZET, an atypical  &#946;-1,3 glucanase. Differentially expressed in Ler (very low) vs Col (very high) backgrounds.	O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT2G19450.1	protein_coding	membrane bound O-acyl transferase (MBOAT) family protein	Encodes Acyl-CoA:diacylglycerol acyltransferase (DGAT) catalyzes the final step of the triacylglycerol synthesis pathway. An insertion  mutation in the TAG1 gene results in altered lipid phenotype. Role in senescence and seed development. Its preferred substrate is linolenoyl-CoA (C18:3-CoA).	membrane bound O-acyl transferase (MBOAT) family protein;(source:Araport11)
AT2G19460.1	protein_coding	Protein of unknown function (DUF3511)		DUF3511 domain protein (DUF3511);(source:Araport11)
AT2G44560.1	protein_coding	glycosyl hydrolase 9B11		glycosyl hydrolase 9B11;(source:Araport11)
AT2G44530.1	protein_coding	Phosphoribosyltransferase family protein		Phosphoribosyltransferase family protein;(source:Araport11)
AT2G44550.1	protein_coding	glycosyl hydrolase 9B10		glycosyl hydrolase 9B10;(source:Araport11)
AT2G44520.1	protein_coding	cytochrome c oxidase 10		cytochrome c oxidase 10;(source:Araport11)
AT2G44525.1	protein_coding	Protein of unknown function (DUF498/DUF598)		NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598);(source:Araport11)
AT2G44540.1	protein_coding	glycosyl hydrolase 9B9		glycosyl hydrolase 9B9;(source:Araport11)
AT2G45480.1	protein_coding	growth-regulating factor 9	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development.	growth-regulating factor 9;(source:Araport11)
AT2G21020.1	pseudogene			pseudogene of NOD26-like intrinsic protein 3;(source:Araport11)
AT2G20940.1	protein_coding	Protein of unknown function (DUF1279)		transmembrane protein, putative (DUF1279);(source:Araport11)
AT2G21010.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	C2 domain-containing protein. Possible pseudogene of AT2G20990.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT2G21000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.8e-22 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G20980.1	protein_coding	minichromosome maintenance 10	Similar to MCM10, which in other organism was shown to be involved in the initiation of DNA replication.	minichromosome maintenance 10;(source:Araport11)
AT2G20970.1	protein_coding			lipid-binding protein;(source:Araport11)
AT2G21030.1	protein_coding			BREVIS RADIX-like protein;(source:Araport11)
AT2G20670.1	protein_coding	Protein of unknown function (DUF506) 		sugar phosphate exchanger, putative (DUF506);(source:Araport11)
AT2G20650.1	protein_coding	RING/U-box superfamily protein	Encodes a putative RING E3 ubiquitin ligase based on its 84.5% amino acid identity with FLY1, which possesses this activity in vitro.  It is predicted to be localized to the endomembrane system based on protein topology.The mucilage of fly2 mutant seeds hydrated in water resembles  wild type seed mucilage.	RING/U-box superfamily protein;(source:Araport11)
AT2G21040.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	C2 domain-containing protein. Possible pseudogene of AT2G20990.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT2G20990.1	protein_coding	synaptotagmin A	Encodes a protein specifically localized to the ER-PM boundary with similarity to synaptotagmins, a class of membrane trafficking proteins. SYT1 is expressed in all tissues.  Loss of function mutations show hypersensitivity to NaCl and electrolyte leakage from the plasma membrane. SYT1 also affects calcium dependent freezing tolerance and mechanical stress response.  Regulates endocytosis endosome  recycling at the plasma membrane, but not membrane traffic along the secretory pathway. SYT1 may have a role in membrane repair such as membrane resealing after freezing induced damage. SYT1 binds to phosphatidylinositol phosphates in vitro. It is distributed to immobile tubules and likely plays an important role in the formation of the tubular ER network as well as in cellular ER-PM tethering.	synaptotagmin A;(source:Araport11)
AT2G20960.1	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G20950.1	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G20875.1	protein_coding	epidermal patterning factor 1	Encodes a secretory peptide EPF1 involved in stomatal development.  EPF1 is related to EPF2 which controls asymmetric cell divisions during stomatal devlopment. Its transcript levels change after inducing MUTE expression in a mute background.	epidermal patterning factor 1;(source:Araport11)
AT2G44200.1	protein_coding	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor		pre-mRNA splicing factor domain-containing protein;(source:Araport11)
AT2G44195.1	protein_coding	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor		pre-mRNA splicing factor domain-containing protein;(source:Araport11)
AT2G19660.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G42920.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT2G42910.1	protein_coding	Phosphoribosyltransferase family protein		Phosphoribosyltransferase family protein;(source:Araport11)
AT2G42680.1	protein_coding	multiprotein bridging factor 1A	One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a bridging factor between a bZIP factor and TBP.  Its expression is developmentally regulated. The mRNA is cell-to-cell mobile.	multiprotein bridging factor 1A;(source:Araport11)
AT2G42670.1	protein_coding	Protein of unknown function (DUF1637)		2-aminoethanethiol dioxygenase, putative (DUF1637);(source:Araport11)
AT2G42660.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT2G42955.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT2G42940.1	protein_coding	Predicted AT-hook DNA-binding family protein	Encodes a nuclear matrix protein with  AT-hook DNA binding motifs that acts in the maintenance of genomic integrity by silencing TEs and repeat-containing genes through epigenetic machinery.  It interacts with FVE and MSI5 which are components of HDAC corepressor complexes.  It is expressed in tapetum during the tetrad stage.	Putative AT-hook DNA-binding family protein;(source:Araport11)
AT2G42930.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT2G42900.1	protein_coding	Plant basic secretory protein (BSP) family protein		Plant basic secretory protein (BSP) family protein;(source:Araport11)
AT2G42890.1	protein_coding	MEI2-like 2	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.	MEI2-like 2;(source:Araport11)
AT2G42710.1	protein_coding	Ribosomal protein L1p/L10e family		Ribosomal protein L1p/L10e family;(source:Araport11)
AT2G42700.1	protein_coding		Member of MAG2 complex on the ER that is responsible for efficient transport of seed storage proteins, functions in protein transport between the ER and Golgi apparatus Sec1 domain, involved in the development of vegetative organs. Required for proper maturation of seed storage proteins.	vesicle docking protein;(source:Araport11)
AT2G42990.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G42690.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G42980.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT2G42960.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G42950.1	protein_coding	Magnesium transporter CorA-like family protein		Magnesium transporter CorA-like family protein;(source:Araport11)
AT2G11670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-89 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT2G15990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G21220.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT2G07490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.1e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G07510.1	transposable_element_gene	transposable element gene	pseudogene of Ulp1 protease family protein	transposable_element_gene;(source:Araport11);pseudogene, expressed protein;(source:TAIR10)
AT2G07486.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OSJNBb0043H09.1, putative insertion sequence-like orf;(source:TAIR10)
AT2G07480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mariner-like transposase family, has a 1.4e-101 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max);(source:TAIR10)
AT2G07483.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 7.6e-13 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT2G07505.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT2G07500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.9e-70 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G17450.1	protein_coding	RING-H2 finger A3A	Encodes a putative RING-H2 finger protein RHA3a.	RING-H2 finger A3A;(source:Araport11)
AT2G17460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.5e-22 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G17470.1	protein_coding	Aluminium activated malate transporter family protein	Encodes ALMT6, a member of the aluminum-activated malate transporter family.	aluminum activated malate transporter family protein;(source:Araport11)
AT2G17480.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO8 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledons and hypocotyl, and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT2G18830.1	protein_coding			RNA-binding (RRM/RBD/RNP motif) family protein;(source:Araport11)
AT2G18840.1	protein_coding	Integral membrane Yip1 family protein	Encodes one of the two YPT/RAB GTPase Interacting Protein 4a (YIP4a) and YIP4b (formerly YIP2), which form a TGN-localized complex with ECHIDNA (ECH). This complex is required for the secretion of cell wall polysaccharides.	Integral membrane Yip1 family protein;(source:Araport11)
AT2G18850.1	protein_coding	SET domain-containing protein		SET domain-containing protein;(source:Araport11)
AT2G18860.1	protein_coding	Syntaxin/t-SNARE family protein		Syntaxin/t-SNARE family protein;(source:Araport11)
AT2G18820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.7e-38 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G13660.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G13690.1	protein_coding	PRLI-interacting factor, putative		PRLI-interacting factor;(source:Araport11)
AT2G13700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.5e-117 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G12120.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28482.1);(source:TAIR10)
AT2G12130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06700.1);(source:TAIR10)
AT2G12040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.5e-96 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G12140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45080.1);(source:TAIR10)
AT2G12150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-84 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G12160.1	pseudogene			pseudogene of Transcriptional factor B3 family protein;(source:Araport11)
AT2G12170.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G12050.1	pseudogene			pseudogene of Reticulon family protein;(source:Araport11)
AT2G12190.1	protein_coding	Cytochrome P450 superfamily protein		Cytochrome P450 superfamily protein;(source:Araport11)
AT2G12100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28480.1);(source:TAIR10)
AT2G30800.1	protein_coding	helicase in vascular tissue and tapetum	Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family.	helicase in vascular tissue and tapetum;(source:Araport11)
AT2G28740.1	protein_coding	histone H4	histone 4	histone H4;(source:Araport11)
AT2G09870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.6e-224 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G09880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to hypothetical protein GB:AAC97247;(source:TAIR10)
AT2G45180.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G44970.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G44950.1	protein_coding	histone mono-ubiquitination 1	The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.	histone mono-ubiquitination 1;(source:Araport11)
AT2G44940.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G04160.1	protein_coding	Subtilisin-like serine endopeptidase family protein	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.	Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT2G02220.1	protein_coding	phytosulfokin receptor 1	Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). Contains dual guanylate cyclase and kinase catalytic activities that operate in vivo.	phytosulfokin receptor 1;(source:Araport11)
AT2G10860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-156 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G10850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43970.1);(source:TAIR10)
AT2G03810.1	protein_coding	18S pre-ribosomal assembly protein gar2-related		18S pre-ribosomal assembly protein gar2-like protein;(source:Araport11)
AT2G03910.1	pseudogene			pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT2G03900.1	pseudogene			pseudogene of zinc transporter 7 precursor;(source:Araport11)
AT2G12750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.5e-93 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT2G12740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.1e-106 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G17650.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT2G17640.1	protein_coding	Trimeric LpxA-like enzymes superfamily protein	Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Expression is induced after long-term sulfur starvation.	Trimeric LpxA-like enzymes superfamily protein;(source:Araport11)
AT2G12900.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G12890.1	pseudogene			pseudogene of Class-II DAHP synthetase family protein;(source:Araport11)
AT2G12880.1	protein_coding	Zinc knuckle (CCHC-type) family protein		Zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT2G12870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.8e-07 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G12930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.6e-294 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G12920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.2e-128 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G12910.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G25950.1	protein_coding	Protein of unknown function (DUF1000)		PITH domain protein (DUF1000);(source:Araport11)
AT2G25940.1	protein_coding	alpha-vacuolar processing enzyme	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.	alpha-vacuolar processing enzyme;(source:Araport11)
AT2G25970.1	protein_coding	KH domain-containing protein		KH domain-containing protein;(source:Araport11)
AT2G25930.1	protein_coding	hydroxyproline-rich glycoprotein family protein	Encodes a nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway. Required component of the core circadian clock regardless of light conditions.	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G33670.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO5 belongs to the clade III, with AtMLO7, AtMLO8, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledon vascular system, and in stigma, anther and pollen grains; it was not expressed in rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT2G33980.1	protein_coding	nudix hydrolase homolog 22		nudix hydrolase homolog 22;(source:Araport11)
AT2G26170.1	protein_coding	cytochrome P450, family 711, subfamily A, polypeptide 1	Encodes a protein with similarity to thromboxane-A synthase, member of the CYP711A cytochrome P450 family. MAX1 is a specific repressor of vegetative axillary buds generated by the axillary meristem. Expressed in vascular traces in the rosette stem and axillary buds throughout plant development. Mutants have increased axillary branches. Along with MAX3,4 thought to mediate control of shoot branching via synthesis of a signal molecule which is transported over long distance mediated by MAX2. cDNA supports the existence of the longer transcript predicted for this locus, no cDNA isolated for shorter transcript. MAX1 downregulates 11 genes involved in flavonoid pathway (CHS, CHI, F3H, F3'H, FLS, DFR, ANS, UFGT, RT, AAC and GST).	cytochrome P450, family 711, subfamily A, polypeptide 1;(source:Araport11)
AT2G27870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G22350.1);(source:TAIR10)
AT2G28050.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes a relatively short regular p-class pentatricopeptide repeat protein comprising seven canonical p repeats and a single short s repeat that is necessary for the 5'-processing and stability of nad2 mRNA in mitochondria.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G28030.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT2G28070.1	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT2G28060.1	protein_coding	5'-AMP-activated protein kinase beta-2 subunit protein	Component of the regulatory subunit of SNF1-related protein kinase. As part of the regulatory complex it binds maltose which promotes kinase activity.	5-AMP-activated protein kinase beta-2 subunit protein;(source:Araport11)
AT2G28040.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT2G14230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-119 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G14245.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.2e-28 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G14240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13320.1);(source:TAIR10)
AT2G43310.1	protein_coding	Ribosomal L18p/L5e family protein		Ribosomal L18p/L5e family protein;(source:Araport11)
AT2G43280.1	protein_coding	Far-red impaired responsive (FAR1) family protein	Encodes one of four FRS (FAR1-RELATED SEQUENCE) factor-like genes in Arabidopsis.  FRS factors are characterized by having an N-terminal C2H2-type chelating motif of the WRKY- Glial Cell Missing1 family, a central core transposase domain of Mutator-like element transposases, and a C-terminal SWIM domain. The four FRF-like genes in  Arabidopsis share only the N-terminal motif with FRS proteins.	Far-red impaired responsive (FAR1) family protein;(source:Araport11)
AT2G43320.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G43290.1	protein_coding	Calcium-binding EF-hand family protein	Calmodulin-like MSS3.Encodes an endomembrane localized member of the CML subfamily VII. Contains a canonical CaM domain and unique N-terminal extension that distinguishes it from other members of the subfamily.	Calcium-binding EF-hand family protein;(source:Araport11)
AT2G43270.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G35790.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G35780.1	protein_coding	serine carboxypeptidase-like 26		serine carboxypeptidase-like 26;(source:Araport11)
AT2G35795.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G02850.1	protein_coding	plantacyanin	Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.	plantacyanin;(source:Araport11)
AT2G05435.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.5e-19 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G19210.1	protein_coding	Leucine-rich repeat transmembrane protein kinase protein		Leucine-rich repeat transmembrane protein kinase protein;(source:Araport11)
AT2G19220.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT2G19020.1	protein_coding	ralf-like 10	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 10;(source:Araport11)
AT2G19000.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G19010.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G22960.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a putative flavonol-phenylacyltransferase. Some accessions (e.g. C24) contain a full length protein that produces high levels of saiginols compared to Col which is non producing. The producer strains also appear to be more resistant to UV-B irradiation.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G22970.1	protein_coding	serine carboxypeptidase-like 11		serine carboxypeptidase-like 11;(source:Araport11)
AT2G22980.1	protein_coding	serine carboxypeptidase-like 13		serine carboxypeptidase-like 13;(source:Araport11)
AT2G22990.1	protein_coding	sinapoylglucose 1	sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.	sinapoylglucose 1;(source:Araport11)
AT2G22950.1	protein_coding	Cation transporter/ E1-E2 ATPase family protein	Encodes a putative auto-regulated   Ca2+-ATPase located in the plasma membrane  involved in transporting Ca2+ outside developing pollen grains.  This activity is important to support normal pollen development, particularly the progression to uninucleated microspores to bicellular pollen grains.	Cation transporter/ E1-E2 ATPase family protein;(source:Araport11)
AT2G27140.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT2G32850.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G32840.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT2G32830.1	protein_coding	phosphate transporter 1;5	Encodes Pht1;5, a member of the Pht1 family of phosphate transporters which include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341).	phosphate transporter 1;(source:Araport11)
AT2G33030.1	protein_coding	receptor like protein 25		receptor like protein 25;(source:Araport11)
AT2G33040.1	protein_coding	gamma subunit of Mt ATP synthase		gamma subunit of Mt ATP synthase;(source:Araport11)
AT2G33020.1	protein_coding	receptor like protein 24		receptor like protein 24;(source:Araport11)
AT2G33010.1	protein_coding	Ubiquitin-associated (UBA) protein		Ubiquitin-associated (UBA) protein;(source:Araport11)
AT2G14080.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G27170.1	protein_coding	Structural maintenance of chromosomes (SMC) family protein	Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.	Structural maintenance of chromosomes (SMC) family protein;(source:Araport11)
AT2G17160.1	protein_coding	Interleukin-1 receptor-associated kinase 4 protein		Interleukin-1 receptor-associated kinase 4 protein;(source:Araport11)
AT2G04310.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 6.2e-78 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G04360.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G04350.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT2G04340.1	protein_coding			cytoplasmic dynein 2 light intermediate chain;(source:Araport11)
AT2G04320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29700.1);(source:TAIR10)
AT2G04330.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1);(source:TAIR10)
AT2G04305.1	protein_coding	Magnesium transporter CorA-like family protein		Magnesium transporter CorA-like family protein;(source:Araport11)
AT2G16835.1	protein_coding	Aquaporin-like superfamily protein		Aquaporin-like superfamily protein;(source:Araport11)
AT2G16850.1	protein_coding	plasma membrane intrinsic protein 2;8		plasma membrane intrinsic protein 2;(source:Araport11)
AT2G16860.1	protein_coding	GCIP-interacting family protein		GCIP-interacting family protein;(source:Araport11)
AT2G16840.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.7e-06 P-value blast match to GB:AAC64917 gag-pol polyprotein (Ty1_Copia-element) (Glycine max);(source:TAIR10)
AT2G22330.1	protein_coding	cytochrome P450, family 79, subfamily B, polypeptide 3	Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. The mRNA is cell-to-cell mobile.	cytochrome P450, family 79, subfamily B, polypeptide 3;(source:Araport11)
AT2G22125.1	protein_coding	binding	Encodes a protein involved in cell elongation in root and anther filaments. Mutants have greater cell volumes in root tissues and have additive phenotypes with other cell expansion mutants such as those carrying mutations in COB, QUI and POM1 loci. POM2/CSI1 promotes Cellulose Synthase and microtubule co-alignment. The mRNA is cell-to-cell mobile.	binding protein;(source:Araport11)
AT2G14970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 0. P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT2G29605.1	protein_coding	Plant protein 1589 of unknown function		Plant protein 1589 of unknown function;(source:Araport11)
AT2G30080.1	protein_coding	ZIP metal ion transporter family	member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess.	ZIP metal ion transporter family;(source:Araport11)
AT2G30070.1	protein_coding	potassium transporter 1	Encodes a high affinity potassium transporter.	potassium transporter 1;(source:Araport11)
AT2G30060.1	protein_coding	Pleckstrin homology (PH) domain superfamily protein		Pleckstrin homology (PH) domain superfamily protein;(source:Araport11)
AT2G30050.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G18115.1	pseudogene			pseudogene of glycine-rich protein;(source:Araport11)
AT2G17950.1	protein_coding	Homeodomain-like superfamily protein	Homeobox gene controlling the stem cell pool. Expressed in the stem cell organizing center of meristems. Required to keep the stem cells in an undifferentiated state. Regulation of WUS transcription is a central checkpoint in stem cell control. The size of  the WUS expression domain controls the  size of the stem cell population through WUS indirectly activating the expression of  CLAVATA3 (CLV3) in the stem cells and CLV3 repressing WUS transcription through the CLV1 receptor kinase signaling pathway. Repression of WUS transcription through AGAMOUS (AG) activity controls stem cell activity in the determinate floral meristem. Binds to TAAT element core motif.  WUS is also involved in cell differentiation during anther development.	Homeodomain-like superfamily protein;(source:Araport11)
AT2G17940.1	protein_coding	Plant protein of unknown function (DUF827)		WEB family protein (DUF827);(source:Araport11)
AT2G18110.1	protein_coding	Translation elongation  factor EF1B/ribosomal protein S6 family protein		Translation elongation factor EF1B/ribosomal protein S6 family protein;(source:Araport11)
AT2G17930.1	protein_coding	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain	Component of the SPT module of the SAGA complex.	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein;(source:Araport11)
AT2G17975.1	protein_coding	zinc finger (Ran-binding) family protein	SRP1 is a C2C2 type zinc finger protein that binds RNA. It has a role in response to ABA.. It can bind the 3'UTR of ABI2 and appears to be involved in RNA turnover.	zinc finger (Ran-binding) family protein;(source:Araport11)
AT2G17970.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G17960.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G24090.1	protein_coding	Ribosomal protein L35		Ribosomal protein L35;(source:Araport11)
AT2G23810.1	protein_coding	tetraspanin8	Member of TETRASPANIN family	tetraspanin8;(source:Araport11)
AT2G19960.1	protein_coding	hAT family dimerisation domain		hAT family dimerization domain-containing protein;(source:Araport11)
AT2G18210.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G18200.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G18470.1	protein_coding	roline-rich extensin-like receptor kinase 4	Proline-rich extensin-like receptor kinase 4. Functions at an early stage of ABA signalling inhibiting primary root cell elongation by perturbing Ca2+ homeostasis.	roline-rich extensin-like receptor kinase 4;(source:Araport11)
AT2G18480.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G22800.1	protein_coding	Homeobox-leucine zipper protein family	Encodes homeobox protein HAT9.	Homeobox-leucine zipper protein family;(source:Araport11)
AT2G22810.1	protein_coding	1-aminocyclopropane-1-carboxylate synthase 4	key regulatory enzyme in the biosynthesis of the plant hormone ethylene. ACS4 is specifically induced by indoleacetic acid (IAA).	1-aminocyclopropane-1-carboxylate synthase 4;(source:Araport11)
AT2G22820.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G35590.1	pseudogene			pseudogene of Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT2G35600.1	protein_coding	BREVIS RADIX-like 1	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	BREVIS RADIX-like 1;(source:Araport11)
AT2G41490.1	protein_coding	UDP-glcnac-adolichol phosphate glcnac-1-p-transferase	UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase	UDP-glcnac-adolichol phosphate glcnac-1-p-transferase;(source:Araport11)
AT2G41700.1	protein_coding	ATP-binding cassette A1		ATP-binding cassette A1;(source:Araport11)
AT2G41500.1	protein_coding	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related	Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome.  LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells.	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein;(source:Araport11)
AT2G46630.1	protein_coding			serine/arginine repetitive matrix protein;(source:Araport11)
AT2G46640.1	protein_coding		Encodes TAC1 (Tiller Angle Control 1). Influences axillary branch growth angle. Inflorescence stems of TAC1 mutants are vertically oriented and have axillary shoots with narrow branch angles.	NAD-dependent protein deacetylase HST1-like protein;(source:Araport11)
AT2G46650.1	protein_coding	cytochrome B5 isoform C	member of Cytochromes b5 The mRNA is cell-to-cell mobile.	cytochrome B5 isoform C;(source:Araport11)
AT2G46660.1	protein_coding	cytochrome P450, family 78, subfamily A, polypeptide 6	Encodes a member of CYP78A cytochrome P450 monooxygenase protein family that is required in the sporophytic tissue of  the mother plant to promote seed growth.	cytochrome P450, family 78, subfamily A, polypeptide 6;(source:Araport11)
AT2G28310.1	protein_coding	Protein of unknown function (DUF707)		trimethylguanosine synthase (DUF707);(source:Araport11)
AT2G28305.1	protein_coding	Putative lysine decarboxylase family protein		Putative lysine decarboxylase family protein;(source:Araport11)
AT2G45980.1	protein_coding		Encodes an Atg8-interacting protein that is partially associated with the ER during favorable growth conditions and becomes mainly associated with a spherical compartment that dynamically moves along the ER network. In stress induced plants, ATI1 is localized to a novel plastid associated bodies that are transported to vesicles, in what appears to be an autophagy dependent process. ATI1 interacts with number of other plastid proteins such as NPQ4 and APE1.	mesoderm induction early response protein;(source:Araport11)
AT2G46000.1	protein_coding			LDL receptor wingless signaling/trafficking chaperone;(source:Araport11)
AT2G45990.1	protein_coding			ribosomal RNA small subunit methyltransferase G;(source:Araport11)
AT2G05640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, low similarity to SP|Q9UUA2 DNA repair and recombination protein pif1, mitochondrial precursor {Schizosaccharomyces pombe};(source:TAIR10)
AT2G05750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 2.9e-126 P-value blast match to GB:AAA66266 unknown protein ORF1 transposable element En-1 (CACTA-element) (Zea mays);(source:TAIR10)
AT2G10470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10836.1);(source:TAIR10)
AT2G10465.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G35260.1);(source:TAIR10)
AT2G07070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT2G03300.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein	TX12 is a Toll/Interleukin-1 receptor domain containing protein. Misexpression results in ectopic activation of defense response genes.	Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT2G03290.1	protein_coding	emp24/gp25L/p24 family/GOLD family protein		emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT2G03280.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT2G03270.1	protein_coding	DNA-binding protein, putative		DNA-binding protein;(source:Araport11)
AT2G03320.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G03310.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G07733.1	pseudogene			pseudogene of NADH dehydrogenase 2B;(source:Araport11)
AT2G07725.1	protein_coding	Ribosomal L5P family protein		Ribosomal L5P family protein;(source:Araport11)
AT2G07732.1	protein_coding	Ribulose bisphosphate carboxylase large chain, catalytic domain		Ribulose bisphosphate carboxylase large chain, catalytic domain-containing protein;(source:Araport11)
AT2G07726.1	pseudogene			pseudogene of mitochondrial ribosomal protein S14;(source:Araport11)
AT2G39710.1	protein_coding	Eukaryotic aspartyl protease family protein	Encodes a Cysteine-rich peptide (CRP) family protein	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT2G39870.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G39880.1	protein_coding	myb domain protein 25	Encodes a putative transcription factor (MYB25).	myb domain protein 25;(source:Araport11)
AT2G07677.1	pseudogene			pseudogene of DNA binding;(source:Araport11)
AT2G07660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.8e-303 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G07678.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07670.1	pseudogene		Pseudogene of AT2G07702	pseudogene of unknown protein;(source:Araport11)
AT2G07640.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G07672.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07683.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.2e-110 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT2G07673.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07671.1	protein_coding	ATP synthase subunit C family protein		ATP synthase subunit C family protein;(source:Araport11)
AT2G07675.1	protein_coding	Ribosomal protein S12/S23 family protein		Ribosomal protein S12/S23 family protein;(source:Araport11)
AT2G07682.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.1e-65 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G07676.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G10730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to  MURA transposase of maize Mutator transposon;(source:TAIR10)
AT2G10740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.7e-102 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to  MURA transposase of maize Mutator transposon;(source:TAIR10)
AT2G10735.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT2G38490.1	protein_coding	CBL-interacting protein kinase 22	member of AtCIPKs	CBL-interacting Serine/Threonine-kinase;(source:Araport11)
AT2G38500.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G38480.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT2G14710.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G14595.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.1e-55 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G14580.1	protein_coding	basic pathogenesis-related protein 1	pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gene expression.	basic pathogenesis-related protein 1;(source:Araport11)
AT2G14740.1	protein_coding	vaculolar sorting receptor 3	Encodes a vacuolar sorting receptor that participates in vacuolar sorting in vegetative tissues and in seeds. The mRNA is cell-to-cell mobile.	vaculolar sorting receptor 3;(source:Araport11)
AT2G14730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32621.1);(source:TAIR10)
AT2G14720.1	protein_coding	vacuolar sorting receptor 4	encodes a vacuolar sorting receptor	vacuolar sorting receptor 4;(source:Araport11)
AT2G41880.1	protein_coding	guanylate kinase 1	Guanylate kinase. Involved in nucleotide metabolism.	guanylate kinase 1;(source:Araport11)
AT2G41890.1	protein_coding	curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein		curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein;(source:Araport11)
AT2G41870.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT2G41860.1	protein_coding	calcium-dependent protein kinase 14	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 14;(source:Araport11)
AT2G42100.1	protein_coding	Actin-like ATPase superfamily protein		Actin-like ATPase superfamily protein;(source:Araport11)
AT2G40640.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G39130.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT2G40250.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT2G40290.1	protein_coding	Eukaryotic translation initiation factor 2 subunit 1	Encodes an eIF2alpha homolog that can be phosphorylated by GCN2 in vitro.	Eukaryotic translation initiation factor 2 subunit 1;(source:Araport11)
AT2G40300.1	protein_coding	ferritin 4	Encodes FERRITIN 4, AtFER4.  Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life.  Function as the main iron store in mammals.  Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool. Localize to mitochondria. Knock out mutants are not sensitive to abiotic stress.	ferritin 4;(source:Araport11)
AT2G40316.1	protein_coding			autophagy-like protein;(source:Araport11)
AT2G40310.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G40320.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 33	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). Chemical evidence for function comes from xylan NMR analysis. Secondary wall thickening phenotype can be only observed in double or triple mutant with esk1.	TRICHOME BIREFRINGENCE-LIKE 33;(source:Araport11)
AT2G40240.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G40260.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT2G40330.1	protein_coding	PYR1-like 6	Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.	PYR1-like 6;(source:Araport11)
AT2G40270.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT2G40340.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G40280.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G47410.1	protein_coding	WD40/YVTN repeat-like-containing domain;Bromodomain		WD40 domain-containing protein;(source:Araport11)
AT2G02690.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G06900.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 8.6e-144 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G22750.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G22760.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G28930.1	protein_coding	protein kinase 1B		protein kinase 1B;(source:Araport11)
AT2G28940.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G28950.1	protein_coding	expansin A6	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A6;(source:Araport11)
AT2G47960.1	protein_coding		Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	trafficking protein particle complex subunit-like protein;(source:Araport11)
AT2G47970.1	protein_coding	Nuclear pore localisation protein NPL4		Nuclear pore localization protein NPL4;(source:Araport11)
AT2G47920.1	protein_coding	Kinase interacting (KIP1-like) family protein		Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT2G47890.1	protein_coding	B-box type zinc finger protein with CCT domain		B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT2G47940.1	protein_coding	DEGP protease 2	Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.	DEGP protease 2;(source:Araport11)
AT2G47900.1	protein_coding	tubby like protein 3	Member of plant TLP family which differs in having an F box domain. Plasma membrane tethering is mediated by PIP2 binding domain. Under abiotic stress TLP3 detaches from the PM and translocates to the nucleus. Mutants are insensitive to ABA.	tubby like protein 3;(source:Araport11)
AT2G47870.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2 and suppress ORA59 promoter activity.	Thioredoxin superfamily protein;(source:Araport11)
AT2G47880.1	protein_coding	Glutaredoxin family protein	Encodes a member of the CC-type glutaredoxin (ROXY) family. CEPD2 is a non secreted polypeptide that is highly similar to  CEPD1 which is another member of a novel family related to glutaredoxins. It is induced by nitrogen starvation. It acts downstream of the CEP1 peptide in systemic N-demand signalling .The RNA is expressed in the phloem of cotelydon and leaf vasculature but the peptide is graft transmissible, traveling from the shoot to the root.	Glutaredoxin family protein;(source:Araport11)
AT2G47930.1	protein_coding	arabinogalactan protein 26		arabinogalactan protein 26;(source:Araport11)
AT2G47950.1	protein_coding			myelin transcription factor-like protein;(source:Araport11)
AT2G47980.1	protein_coding	sister-chromatid cohesion protein 3	Essential to the monopolar orientation of the kinetochores during meiosis.	sister-chromatid cohesion protein 3;(source:Araport11)
AT2G47990.1	protein_coding	transducin family protein / WD-40 repeat family protein	Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.	transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G47910.1	protein_coding	chlororespiratory reduction 6	Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.	chlororespiratory reduction 6;(source:Araport11)
AT3G51895.1	protein_coding	sulfate transporter 3;1	Encodes a chloroplast-localized sulfate transporter.	sulfate transporter 3;(source:Araport11)
AT3G06483.1	protein_coding	pyruvate dehydrogenase kinase	Pyruvate dehydrogenase kinase (PDK) specifically phosphorylates the E1&#945; subunit of the pyruvate dehydrogenase complex (PDC) on a Ser residue using ATP as a phosphate donor.  PDK is a unique type of protein kinase having a His-kinase-like sequence but Ser-kinase activity. Site-directed mutagenesis and structural analysis indicate that PDK belongs to the GHKL superfamily.	pyruvate dehydrogenase kinase;(source:Araport11)
AT3G15095.1	protein_coding		Encodes HCF243 (high chlorophyll fluorescence), a chloroplast-localized protein involved in the D1 protein stability of the photosystem II complex1.	Serine/Threonine-kinase pakA-like protein;(source:Araport11)
AT3G27325.1	protein_coding	hydrolases, acting on ester bonds		hydrolases, acting on ester bond;(source:Araport11)
AT3G27925.1	protein_coding	DegP protease 1	Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen.  Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition. The mRNA is cell-to-cell mobile.	DegP protease 1;(source:Araport11)
AT3G24255.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT3G24385.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G24365.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.7e-80 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G22450.1	protein_coding	Ribosomal L18p/L5e family protein		Ribosomal L18p/L5e family protein;(source:Araport11)
AT3G17205.1	protein_coding	ubiquitin protein ligase 6		ubiquitin protein ligase 6;(source:Araport11)
AT3G16555.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G16785.1	protein_coding	phospholipase D P1	Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins.  This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains.  Involved regulating root development in response to nutrient limitation. Does not appear to be involved in root hair patterning. Not induced upon Pi starvation.	phospholipase D P1;(source:Araport11)
AT3G19085.1	protein_coding			F-box/RNI/FBD-like domain protein;(source:Araport11)
AT3G30775.1	protein_coding	Methylenetetrahydrofolate reductase family protein	Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress.  The promoter contains an L-proline-inducible element.	Methylenetetrahydrofolate reductase family protein;(source:Araport11)
AT3G13065.1	protein_coding	STRUBBELIG-receptor family 4		STRUBBELIG-receptor family 4;(source:Araport11)
AT3G13225.1	protein_coding	WW domain-containing protein		WW domain-containing protein;(source:Araport11)
AT3G13222.1	protein_coding	GBF-interacting protein 1	Encodes a protein that binds to G-box binding transcription factors and enhances their binding affinities to G-box in vitro. This protein localizes to the nucleus and is expressed predominantly in the root.	GBF-interacting protein 1;(source:Araport11)
AT3G15355.1	protein_coding	ubiquitin-conjugating enzyme 25		ubiquitin-conjugating enzyme 25;(source:Araport11)
AT3G26618.1	protein_coding	eukaryotic release factor 1-3		eukaryotic release factor 1-3;(source:Araport11)
AT3G26744.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. It also binds to and inhibits the expression of ABI3. Mutants are defective in cold-regulated gene expression and ABA signaling druing seed germination.. Cold stress triggers protein degradation of nuclear GFPICE1  protein, and the RING finger protein HOS1 is required.  Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance. Together with ZOU, ICE1 determines primary seed dormancy depth independently of their joint role in endosperm development.ICE1 interacts with ABI5. Also members of the DELLA family, which repress ICE1 function.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G14225.1	protein_coding	GDSL-motif lipase 4	Contains lipase signature motif and GDSL domain.	GDSL-motif lipase 4;(source:Araport11)
AT3G07565.1	protein_coding	Protein of unknown function (DUF3755)		histone H2A deubiquitinase (DUF3755);(source:Araport11)
AT3G28155.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G27473.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G14415.1	protein_coding	Aldolase-type TIM barrel family protein	Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance. The mRNA is cell-to-cell mobile.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G26115.1	protein_coding	Pyridoxal-5'-phosphate-dependent enzyme family protein		Pyridoxal-5-phosphate-dependent enzyme family protein;(source:Araport11)
AT3G20475.1	protein_coding	MUTS-homologue 5	Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination.  Required for the formation of Class I interference-sensitive crossovers.  Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination.  Required for the formation of Class I interference-sensitive crossovers.	MUTS-homologue 5;(source:Araport11)
AT3G30655.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.9e-253 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G18524.1	protein_coding	MUTS homolog 2	Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.	MUTS homolog 2;(source:Araport11)
AT3G18035.1	protein_coding	winged-helix DNA-binding transcription factor family protein	A linker histone like protein	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT3G29035.1	protein_coding	NAC domain containing protein 3	Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500. The mRNA is cell-to-cell mobile.	NAC domain containing protein 3;(source:Araport11)
AT3G20975.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.6e-08 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G15605.1	protein_coding	nucleic acid binding		nucleic acid binding protein;(source:Araport11)
AT3G26125.1	protein_coding	cytochrome P450, family 86, subfamily C, polypeptide 2	encodes a protein with cytochrome P450 domain	cytochrome P450, family 86, subfamily C, polypeptide 2;(source:Araport11)
AT3G17465.1	protein_coding	ribosomal protein L3 plastid	encodes a putative L3 ribosomal protein targeted to the plastid.	ribosomal protein L3 plastid;(source:Araport11)
AT3G24240.1	protein_coding	Leucine-rich repeat receptor-like protein kinase family protein	RGFR1 is a leucine-­rich repeat receptor kinase that, together with RGFR2 and RGFR3, binds ROOT GROWTH FACTORS and is required for establishing the gradient of PLETHORA1 and PLETHORA2 essential for proper root growth and development.	Leucine-rich repeat receptor-like protein kinase family protein;(source:Araport11)
AT3G22845.1	protein_coding	emp24/gp25L/p24 family/GOLD family protein		emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT3G29075.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT3G18295.1	protein_coding	Protein of unknown function (DUF1639)		DUF1639 family protein, putative (DUF1639);(source:Araport11)
AT3G28345.1	protein_coding	ABC transporter family protein	Encodes an ATP-binding cassette (ABC) transporter.  Expressed in the vascular tissue of primary stem.	ABC transporter family protein;(source:Araport11)
AT3G22104.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G29635.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G09000.1	protein_coding	proline-rich family protein	Encodes a microtubule-associated protein.	proline-rich family protein;(source:Araport11)
AT3G09030.1	protein_coding	BTB/POZ domain-containing protein	EAP3 is a cytolsolic BTB/POZ-domain protein involved in trafficking of PEN3.	BTB/POZ domain-containing protein;(source:Araport11)
AT3G28715.1	protein_coding	ATPase, V0/A0 complex, subunit C/D		ATPase, V0/A0 complex, subunit C/D;(source:Araport11)
AT3G07300.1	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein		NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT3G33066.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.1e-125 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT3G33064.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G41770.1);(source:TAIR10)
AT3G33073.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT3G33071.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-280 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33072.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33079.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-203 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33058.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33081.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33082.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33065.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33083.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.1e-144 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT3G33085.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G25585.1	protein_coding	aminoalcoholphosphotransferase	aminoalcoholphosphotransferase (AAPT2)	aminoalcoholphosphotransferase;(source:Araport11)
AT3G57410.1	protein_coding	villin 3	Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.	villin 3;(source:Araport11)
AT4G05310.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT4G05230.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT4G05190.1	protein_coding	kinesin 5	ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.	kinesin 5;(source:Araport11)
AT4G05150.1	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT4G05280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1);(source:TAIR10)
AT4G05240.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT4G05200.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 25	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 25;(source:Araport11)
AT4G05160.1	protein_coding	AMP-dependent synthetase and ligase family protein	Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0,  C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal &#946;-oxidation steps of jasmonic acid biosynthesis.	AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT4G05120.1	protein_coding	Major facilitator superfamily protein	Encodes an equilibrative nucleoside transporter AtENT3.  Mutations of this locus allow mutants to grow on uridine analogue fluorouridine.	Major facilitator superfamily protein;(source:Araport11)
AT4G05250.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT4G05290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05564.1);(source:TAIR10)
AT4G05170.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G05220.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT4G05210.1	protein_coding	Trimeric LpxA-like enzymes superfamily protein		Trimeric LpxA-like enzymes superfamily protein;(source:Araport11)
AT4G05260.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT4G05140.1	protein_coding	Nucleoside transporter family protein		Nucleoside transporter family protein;(source:Araport11)
AT4G05300.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43380.1);(source:TAIR10)
AT4G05270.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT4G05130.1	protein_coding	equilibrative nucleoside transporter 4		equilibrative nucleoside transporter 4;(source:Araport11)
AT4G05180.1	protein_coding	photosystem II subunit Q-2	Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.	photosystem II subunit Q-2;(source:Araport11)
AT4G32170.1	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 2	member of CYP96A	cytochrome P450, family 96, subfamily A, polypeptide 2;(source:Araport11)
AT4G31960.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G31970.1	protein_coding	cytochrome P450, family 82, subfamily C, polypeptide 2	Functions in the biosynthesis of 4-hydroxy indole-3-carbonyl nitrile (4-OH-ICN), a cyanogenic phytoalexin in Arabidopsis. CYP82C2 acts as a hydroxylase on indole-3-carbonyl nitrile to generate 4-OH-ICN.	cytochrome P450, family 82, subfamily C, polypeptide 2;(source:Araport11)
AT4G31980.1	protein_coding			PPPDE thiol peptidase family protein;(source:Araport11)
AT4G31990.1	protein_coding	aspartate aminotransferase 5	Encodes a plastid-localized aspartate aminotransferase.  Does not display any PAT (glutamate/aspartate-prephenate aminotransferase) activity even in the presence of a high concentration of prephenate.	aspartate aminotransferase 5;(source:Araport11)
AT4G31920.1	protein_coding	response regulator 10	Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Also involved in cytokinin-dependent inhibition of hypocotyl elongation and cytokinin-dependent greening and shooting in tissue culture. ARR1, ARR10, and ARR12 are redundant regulators of drought response, with ARR1 being the most critical. ARR1, ARR10 and ARR12 redundantly bind to the promoter of WUSCHEL (WUS), directly activate its transcription. In parallel, ARR1, ARR10 and ARR12 repress the expression of YUCCAs (YUCs), which encode a key enzyme for auxin biosynthesis, indirectly promoting WUS induction. The regulation of ARR1, ARR10 and ARR12 on WUS and YUCs is required for regeneration and maintenance of shoot meristem.	response regulator 10;(source:Araport11)
AT4G32000.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G32010.1	protein_coding	HSI2-like 1		HSI2-like 1;(source:Araport11)
AT4G31930.1	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT4G31940.1	protein_coding	cytochrome P450, family 82, subfamily C, polypeptide 4	The gene encodes a cytochrome P450 enzyme, CYP82C. It is involved in the early Fe deficiency response.CYP82C4 hydroxylates fraxetin to generate sideretin (5-hydroxyfraxetin). Fraxetin and sideretin are catecholic coumarins secreted into the rhizosphere under conditions of low iron availability and help mobilize this nutrient from insoluble iron(III) pools in the soil.The mRNA is cell-to-cell mobile.	cytochrome P450, family 82, subfamily C, polypeptide 4;(source:Araport11)
AT4G31950.1	protein_coding	cytochrome P450, family 82, subfamily C, polypeptide 3	member of CYP82C	cytochrome P450, family 82, subfamily C, polypeptide 3;(source:Araport11)
AT4G21560.1	protein_coding	vacuolar protein sorting-associated protein 28 homolog 1		vacuolar protein sorting-associated protein-like protein;(source:Araport11)
AT4G21570.1	protein_coding	Protein of unknown function (DUF300)		organic solute transporter ostalpha protein (DUF300);(source:Araport11)
AT4G21580.1	protein_coding	oxidoreductase, zinc-binding dehydrogenase family protein		oxidoreductase, zinc-binding dehydrogenase family protein;(source:Araport11)
AT4G21590.1	protein_coding	endonuclease 3	Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.	endonuclease 3;(source:Araport11)
AT4G21600.1	protein_coding	endonuclease 5	Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches.  It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).	endonuclease 5;(source:Araport11)
AT4G21610.1	protein_coding	lsd one like 2	Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains.	lsd one like 2;(source:Araport11)
AT4G20100.1	protein_coding	PQ-loop repeat family protein / transmembrane family protein		PQ-loop repeat family protein / transmembrane family protein;(source:Araport11)
AT4G20110.1	protein_coding	VACUOLAR SORTING RECEPTOR 7		VACUOLAR SORTING RECEPTOR 7;(source:Araport11)
AT4G20130.1	protein_coding	plastid transcriptionally active 14		plastid transcriptionally active 14;(source:Araport11)
AT4G25910.1	protein_coding	NFU domain protein 3	Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast. The mRNA is cell-to-cell mobile.	NFU domain protein 3;(source:Araport11)
AT4G25920.1	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT4G25930.1	protein_coding	Protein of unknown function (DUF295)	DUF295 domain containing protein.	hypothetical protein (DUF295);(source:Araport11)
AT4G25940.1	protein_coding	ENTH/ANTH/VHS superfamily protein		ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT4G25950.1	protein_coding	vacuolar ATP synthase G3	V-ATPase G-subunit like protein	vacuolar ATP synthase G3;(source:Araport11)
AT4G25960.1	protein_coding	P-glycoprotein 2		P-glycoprotein 2;(source:Araport11)
AT4G25970.1	protein_coding	phosphatidylserine decarboxylase 3	Encodes the major form of the two non-mitochondrail phosphatidylserine decarboxylase. Located at the ER. The mRNA is cell-to-cell mobile.	phosphatidylserine decarboxylase 3;(source:Araport11)
AT4G25980.1	protein_coding	Peroxidase superfamily protein		peroxidase superfamily protein;(source:Araport11)
AT4G25990.1	protein_coding	CCT motif family protein	chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes	CCT motif family protein;(source:Araport11)
AT4G23320.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 24	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 24;(source:Araport11)
AT4G23330.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G23340.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G38250.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT4G38340.1	protein_coding	Plant regulator RWP-RK family protein	Chip-seq data indicates bZIP1 binds to  the NLP3 promoter.	Plant regulator RWP-RK family protein;(source:Araport11)
AT4G38260.1	protein_coding	Protein of unknown function (DUF833)		transport/golgi organization-like protein (DUF833);(source:Araport11)
AT4G38270.1	protein_coding	galacturonosyltransferase 3	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 3;(source:Araport11)
AT4G38280.1	protein_coding			integral membrane hemolysin-III-like protein;(source:Araport11)
AT4G38460.1	protein_coding	geranylgeranyl reductase	Encodes a type II small subunit of the heteromeric geranyl(geranyl) diphosphate synthase that is localized to the chloroplast, expressed in petals and sepals and is involved in monoterpene biosynthesis. The mRNA is cell-to-cell mobile.	geranylgeranyl reductase;(source:Araport11)
AT4G38290.1	protein_coding	Haemolysin-III related integral membrane protein		hemolysin-III related integral membrane protein;(source:Araport11)
AT4G38470.1	protein_coding	ACT-like protein tyrosine kinase family protein		ACT-like protein tyrosine kinase family protein;(source:Araport11)
AT4G38300.1	protein_coding	glycosyl hydrolase family 10 protein		glycosyl hydrolase family 10 protein;(source:Araport11)
AT4G38480.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G38310.1	protein_coding	Galactosyl transferase GMA12/MNN10 family protein		Galactosyl transferase GMA12/MNN10 family protein;(source:Araport11)
AT4G38490.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G38500.1	protein_coding	Protein of unknown function (DUF616)		Sept9 (DUF616);(source:Araport11)
AT4G38320.1	protein_coding	heptahelical protein 5	heptahelical transmembrane protein HHP5	heptahelical protein 5;(source:Araport11)
AT4G38330.1	protein_coding	Integral membrane protein hemolysin-III homolog		hemolysin-III integral membrane-like protein;(source:Araport11)
AT4G38510.1	protein_coding	ATPase, V1 complex, subunit B protein	One of three genes encoding the vacuolar ATP synthase subunit B1.  The protein binds to and co-localizes with F-actin, bundles F-actin to form higher-order structure, and stabilizes actin filaments in vitro.	ATPase, V1 complex, subunit B protein;(source:Araport11)
AT4G38520.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT4G38530.1	protein_coding	phospholipase C1	Encodes a putative phosphoinositide-specific phospholipase C.  There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.	phospholipase C1;(source:Araport11)
AT4G38540.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT4G35420.1	protein_coding	dihydroflavonol 4-reductase-like1	Encodes DRL1 (Dihydroflavonol 4-reductase-like1), a closely related homolog of the rice anther-specific gene OsDFR2.  DRL1 may be involved in a metabolic pathway essential for pollen wall development and male fertility.  Mutant plants have impaired pollen formation and seed production.	dihydroflavonol 4-reductase-like1;(source:Araport11)
AT4G36350.1	protein_coding	purple acid phosphatase 25		purple acid phosphatase 25;(source:Araport11)
AT4G36370.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G36360.1	protein_coding	beta-galactosidase 3	putative beta-galactosidase (BGAL3 gene)	beta-galactosidase 3;(source:Araport11)
AT4G25110.1	protein_coding	metacaspase 2	Encodes a type I metacaspase. Two Arabidopsis metacaspases, AT1G02170 (MC1) and AT4G25110 (MC2)  antagonistically control programmed cell death in Arabidopsis. MC1 is a positive regulator of cell death and requires conserved caspase-like putative catalytic residues for its function. MC2 negatively regulates cell death. This function is independent of the putative catalytic residues.  A third type I Arabidopsis metacaspase is MC3 (AT5g64240).	metacaspase 2;(source:Araport11)
AT4G25120.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a homolog of the yeast SRS2 (Suppressor of RAD Six-screen mutant 2) helicase.  The Arabidopsis SRS2 is a functional 3’- to 5’-helicase.  Biochemical studies show that SRS2 disrupts recombinogenic DNA intermediates and facilitates single strand annealing.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G25080.1	protein_coding	magnesium-protoporphyrin IX methyltransferase	Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.	magnesium-protoporphyrin IX methyltransferase;(source:Araport11)
AT4G25040.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G25130.1	protein_coding	peptide met sulfoxide reductase 4	Encodes a chloroplast-localized methionine sulfoxide reductase that is a member of the MSRA family. Involved in protection of chloroplasts from oxidative stress.	peptide met sulfoxide reductase 4;(source:Araport11)
AT4G25050.1	protein_coding	acyl carrier protein 4	encodes an acyl carrier protein predominantly expressed in leaves. Gene expression is upregulated by light.	acyl carrier protein 4;(source:Araport11)
AT4G25140.1	protein_coding	oleosin 1	Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination.  Functions in freezing tolerance of seeds.	oleosin 1;(source:Araport11)
AT4G25090.1	protein_coding	Riboflavin synthase-like superfamily protein		Riboflavin synthase-like superfamily protein;(source:Araport11)
AT4G25150.1	protein_coding	HAD superfamily, subfamily IIIB acid phosphatase 		HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT4G25100.1	protein_coding	Fe superoxide dismutase 1	Fe-superoxide dismutase	Fe superoxide dismutase 1;(source:Araport11)
AT4G25160.1	protein_coding	U-box domain-containing protein kinase family protein	Encodes a U-box domain-containing E3 ubiquitin ligase with central Ser/Thr protein kinase domain whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.	U-box domain-containing protein kinase family protein;(source:Araport11)
AT4G25070.1	protein_coding			caldesmon-like protein;(source:Araport11)
AT4G28980.1	protein_coding	CDK-activating kinase 1AT	Encodes a CDK-activating kinase that regulates root initial cell differentiation.  Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription.	CDK-activating kinase 1AT;(source:Araport11)
AT4G28880.1	protein_coding	casein kinase I-like 3	Member of CKL gene family (CKL-A group)	casein kinase I-like 3;(source:Araport11)
AT4G28870.1	protein_coding			mutator transposase MUDRA protein;(source:Araport11)
AT4G29070.1	protein_coding	Phospholipase A2 family protein		Phospholipase A2 family protein;(source:Araport11)
AT4G29090.1	protein_coding	Ribonuclease H-like superfamily protein		Ribonuclease H-like superfamily protein;(source:Araport11)
AT4G28990.1	protein_coding	RNA-binding protein-related		RNA-binding protein-like protein;(source:Araport11)
AT4G29010.1	protein_coding	Enoyl-CoA hydratase/isomerase family	Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities.	Enoyl-CoA hydratase/isomerase family;(source:Araport11)
AT4G29080.1	protein_coding	phytochrome-associated protein 2	phytochrome-associated protein 2 (PAP2)	phytochrome-associated protein 2;(source:Araport11)
AT4G29100.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G29000.1	protein_coding	Tesmin/TSO1-like CXC domain-containing protein		Tesmin/TSO1-like CXC domain-containing protein;(source:Araport11)
AT4G29020.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G29040.1	protein_coding	regulatory particle AAA-ATPase 2A	RPT2a encodes the 26S proteasome subunit. It is required for root meristem  maintenance, and regulates gametogenesis. RPT2a is also shown to regulate gene silencing via DNA methylation.	regulatory particle AAA-ATPase 2A;(source:Araport11)
AT4G29050.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT4G29060.1	protein_coding	elongation factor Ts family protein		elongation factor Ts family protein;(source:Araport11)
AT4G34170.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G34180.1	protein_coding	Cyclase family protein	Encodes a cyclase-family protein that is a negative regulator of cell death that regulates pathogen-induced symptom development.	Cyclase family protein;(source:Araport11)
AT4G34190.1	protein_coding	stress enhanced protein 1	Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity.  It may be involved in chlorophyll binding.	stress enhanced protein 1;(source:Araport11)
AT4G34020.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes a homolog of animal DJ-1 superfamily protein.  In the A. thaliana genome, three genes encoding close homologs of human DJ-1 were identified AT3G14990 (DJ1A), AT1G53280 (DJ1B) and AT4G34020 (DJ1C).  Among the three homologs, DJ1C is essential for chloroplast development and viability.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT4G34200.1	protein_coding	D-3-phosphoglycerate dehydrogenase	Encodes a 3-phosphoglycerate dehydrogenase that is essential for embryo and pollen development.	D-3-phosphoglycerate dehydrogenase;(source:Araport11)
AT4G34210.1	protein_coding	SKP1-like 11	one of 20 SKP1 homologs in Arabidopsis. Protein is most similar to ASK12 and RNAi lines show defects in stamen development.	SKP1-like 11;(source:Araport11)
AT4G34220.1	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes a receptor like kinase involved in ABA-mediated seedling development and drought tolerance.RDK1 is an atypical or pseudokinase and has no phosphorylation activity. Its expression is upregulated in response to ABA.interacts with ABI1 and other PP2C phosphatases.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G34230.1	protein_coding	cinnamyl alcohol dehydrogenase 5	Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.	cinnamyl alcohol dehydrogenase 5;(source:Araport11)
AT4G31780.1	protein_coding	monogalactosyl diacylglycerol synthase 1	Encodes an A-type monogalactosyldiacylglycerol (MGDG) synthase. It represents the isoform responsible for the bulk of MGDG synthesis in Arabidopsis.	monogalactosyl diacylglycerol synthase 1;(source:Araport11)
AT4G31790.1	protein_coding	Tetrapyrrole (Corrin/Porphyrin) Methylases		Tetrapyrrole (Corrin/Porphyrin) Methylase;(source:Araport11)
AT4G31800.1	protein_coding	WRKY DNA-binding protein 18	Pathogen-induced transcription factor. Binds W-box sequences  in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18  enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both  P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. The mRNA is cell-to-cell mobile.	WRKY DNA-binding protein 18;(source:Araport11)
AT4G31570.1	protein_coding			nucleoporin;(source:Araport11)
AT4G31580.1	protein_coding	serine/arginine-rich 22	Encodes a Serine/arginine-rich (SR) protein RSZp22.  SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain.  RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	serine/arginine-rich 22;(source:Araport11)
AT4G31590.1	protein_coding	Cellulose-synthase-like C5	encodes a gene similar to cellulose synthase	Cellulose-synthase-like C5;(source:Araport11)
AT4G33010.1	protein_coding	glycine decarboxylase P-protein 1		glycine decarboxylase P-protein 1;(source:Araport11)
AT4G33020.1	protein_coding	ZIP metal ion transporter family	member of Fe(II) transporter isolog family	ZIP metal ion transporter family;(source:Araport11)
AT4G33030.1	protein_coding	sulfoquinovosyldiacylglycerol 1	involved in sulfolipid biosynthesis The mRNA is cell-to-cell mobile.	sulfoquinovosyldiacylglycerol 1;(source:Araport11)
AT4G33040.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2.	Thioredoxin superfamily protein;(source:Araport11)
AT4G33050.1	protein_coding	calmodulin-binding family protein	Encodes a calmodulin-binding protein involved in stomatal movement.	calmodulin-binding family protein;(source:Araport11)
AT4G33060.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G33070.1	protein_coding	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein		Thiamine pyrophosphate dependent pyruvate decarboxylase family protein;(source:Araport11)
AT4G37310.1	protein_coding	cytochrome P450, family 81, subfamily H, polypeptide 1	member of CYP81H	cytochrome P450, family 81, subfamily H, polypeptide 1;(source:Araport11)
AT4G37340.1	protein_coding	cytochrome P450, family 81, subfamily D, polypeptide 3	member of CYP81D	cytochrome P450, family 81, subfamily D, polypeptide 3;(source:Araport11)
AT4G37520.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT4G37530.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT4G37540.1	protein_coding	LOB domain-containing protein 39		LOB domain-containing protein 39;(source:Araport11)
AT4G37550.1	protein_coding	Acetamidase/Formamidase family protein		Acetamidase/Formamidase family protein;(source:Araport11)
AT4G37330.1	protein_coding	cytochrome P450, family 81, subfamily D, polypeptide 4	member of CYP81D	cytochrome P450, family 81, subfamily D, polypeptide 4;(source:Araport11)
AT4G37560.1	protein_coding	Acetamidase/Formamidase family protein		Acetamidase/Formamidase family protein;(source:Araport11)
AT4G37320.1	protein_coding	cytochrome P450, family 81, subfamily D, polypeptide 5	member of CYP81D	cytochrome P450, family 81, subfamily D, polypeptide 5;(source:Araport11)
AT4G37300.1	protein_coding	maternal effect embryo arrest 59		maternal effect embryo arrest 59;(source:Araport11)
AT4G30000.1	protein_coding	Dihydropterin pyrophosphokinase / Dihydropteroate synthase		Dihydropterin pyrophosphokinase / Dihydropteroate synthase;(source:Araport11)
AT4G30010.1	protein_coding			ATP-dependent RNA helicase;(source:Araport11)
AT4G29980.1	protein_coding			fasciclin-like arabinogalactan protein;(source:Araport11)
AT4G29990.1	protein_coding	Leucine-rich repeat transmembrane protein kinase protein		Leucine-rich repeat transmembrane protein kinase protein;(source:Araport11)
AT4G24750.1	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein		Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT4G24760.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G24900.1	protein_coding		Encodes a nuclear C2H2 domain-containing protein involved in embryo and endosperm development.	coiled coil protein;(source:Araport11)
AT4G24770.1	protein_coding	31-kDa RNA binding protein	Encodes a chloroplast RNA-binding protein.  A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).  Required for editing and stability of specific chloroplast mRNAs.	31-kDa RNA binding protein;(source:Araport11)
AT4G24980.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G24930.1	protein_coding	thylakoid lumenal 17.9 kDa protein, chloroplast		thylakoid lumenal 17.9 kDa protein, chloroplast;(source:Araport11)
AT4G24910.1	protein_coding	Protein of unknown function (DUF579)		glucuronoxylan 4-O-methyltransferase-like protein (DUF579);(source:Araport11)
AT4G24940.1	protein_coding	SUMO-activating enzyme 1A	Encodes one of the two subunits of the SUMO activation enzyme required during sumolation.  Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.	SUMO-activating enzyme 1A;(source:Araport11)
AT4G24920.1	protein_coding	secE/sec61-gamma protein transport protein		secE/sec61-gamma protein transport protein;(source:Araport11)
AT4G24950.1	protein_coding		Encodes the plant KASH protein SINE4; SINE4 interacts with SUN1 and SUN2 and is localized at the nuclear envelope.	transmembrane protein;(source:Araport11)
AT4G24780.1	protein_coding	Pectin lyase-like superfamily protein	Encodes a pectate lyase involved in response to nematodes.	Pectin lyase-like superfamily protein;(source:Araport11)
AT4G24960.1	protein_coding	HVA22 homologue D	Homologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family, it may be involved in regulation of autophagy during development. The mRNA is cell-to-cell mobile.	HVA22 homologue D;(source:Araport11)
AT4G24790.1	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT4G24880.1	protein_coding			snurportin-1 protein;(source:Araport11)
AT4G24890.1	protein_coding	purple acid phosphatase 24		purple acid phosphatase 24;(source:Araport11)
AT4G24970.1	protein_coding	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	MORC7 is a member of a family of  GHKL ATPases. It is localized in the nuceloplasm and adjacent to chromocenters. Along with MORC4, it appears to repress the expression of genes involved in defense against pathogens.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein;(source:Araport11)
AT4G23120.1	protein_coding	Bromo-adjacent homology (BAH) domain-containing protein		Bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT4G23130.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 5	Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	cysteine-rich RLK (RECEPTOR-like protein kinase) 5;(source:Araport11)
AT4G23140.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 6	Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	cysteine-rich RLK (RECEPTOR-like protein kinase) 6;(source:Araport11)
AT4G10400.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT4G10410.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G10420.1	protein_coding	FBD / Leucine Rich Repeat domains containing protein		FBD / Leucine Rich Repeat domains containing protein;(source:Araport11)
AT4G10380.1	protein_coding	NOD26-like intrinsic protein 5;1	Boric acid channel. Essential for efficient boron  uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance. Localized preferentially in outer membrane domains of root cells.	NOD26-like intrinsic protein 5;(source:Araport11)
AT4G10390.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G32320.1	protein_coding	ascorbate peroxidase 6	Encodes a cytosolic ascorbate peroxidase APX6.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	ascorbate peroxidase 6;(source:Araport11)
AT4G32330.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family	WDL5 is an target of EIN3 that co-localizes with cortical microtubles. It its thought to function to stabilize microtubles during ethylene induced hypocotyl elongation.	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT4G32340.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G32350.1	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT4G32360.1	protein_coding	Pyridine nucleotide-disulphide oxidoreductase family protein		Pyridine nucleotide-disulfide oxidoreductase family protein;(source:Araport11)
AT4G32300.1	protein_coding	S-domain-2 5		S-domain-2 5;(source:Araport11)
AT4G35500.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G35750.1	protein_coding	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein		SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein;(source:Araport11)
AT4G35760.1	protein_coding	NAD(P)H dehydrogenase (quinone)s	Encodes a bimodular enzyme comprising an integral domain homologous to the catalytic subunit of mammalian vitamin K epoxide reductase (VKORC1, EC 1.1.4.1) that is fused to a soluble thioredoxin-like moiety. Using yeast microsomes as a recombinant system, it was shown that the VKORC1 domain of At4g35760 functions as a stringent naphthoquinone reductase, and that its reduced Trx-like partner can serve as its electron donor.  Located in plastid. Required for the assembly of photosystem II. Can catalyze disulfide bond formation in vitro.	NAD(P)H dehydrogenase (quinone)s;(source:Araport11)
AT4G35770.1	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein	Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT4G35780.1	protein_coding	ACT-like protein tyrosine kinase family protein		ACT-like protein tyrosine kinase family protein;(source:Araport11)
AT4G31390.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G31400.1	protein_coding	damaged DNA binding;DNA-directed DNA polymerases	Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an  N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7  temperature-sensitive mutation.  Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development. Inactivation of CTF7 results in severe defects in reproduction and vegetative growth.	protein CTF7;(source:Araport11)
AT4G31410.1	protein_coding	Protein of unknown function (DUF1644)		E3 ubiquitin-protein ligase, putative (DUF1644);(source:Araport11)
AT4G31420.1	protein_coding	Zinc finger protein 622		Zinc finger protein 622;(source:Araport11)
AT4G31430.1	protein_coding		Encodes a plant-specific protein that physically interacts with CRWN1 and its homolog CRWN4 and localizes at the inner nuclear membrane. KAKU4 deforms the nuclear envelope in a dose-dependent manner, in association with nuclear membrane invagination and stack formation.	flocculation protein;(source:Araport11)
AT4G31370.1	protein_coding	FASCICLIN-like arabinogalactan protein 5 precursor	fasciclin-like arabinogalactan-protein, putative (FLA5)	FASCICLIN-like arabinogalactan protein 5 precursor;(source:Araport11)
AT4G31380.1	protein_coding	FPF1-like protein 1	encodes a small protein with unknown function and is similar to flower promoting factor 1. This gene is not expressed in apical meristem after floral induction but is expressed in roots, flowers, and in low abundance, leaves.	flowering-promoting factor-like protein;(source:Araport11)
AT4G03400.1	protein_coding	Auxin-responsive GH3 family protein	Encodes a GH3-related gene involved in red light-specific hypocotyl elongation.  Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation.	Auxin-responsive GH3 family protein;(source:Araport11)
AT4G03410.1	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT4G30130.1	protein_coding	Protein of unknown function (DUF630 and DUF632)		DUF630 family protein (DUF630 and DUF632);(source:Araport11)
AT4G30140.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	Member of the GDSL lipase/esterase family of proteins that functions as cutinase. Expressed in pollen and at the zone of lateral root emergence.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT4G30150.1	protein_coding			Urb2/Npa2 family protein;(source:Araport11)
AT4G13920.1	protein_coding	receptor like protein 50		receptor like protein 50;(source:Araport11)
AT4G14960.1	protein_coding	Tubulin/FtsZ family protein	Encodes an alpha-tubulin isoform required for right handed helical growth.	Tubulin/FtsZ family protein;(source:Araport11)
AT4G17060.1	protein_coding	FRIGIDA interacting protein 2	Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060.  FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time.	FRIGIDA interacting protein 2;(source:Araport11)
AT4G32510.1	protein_coding	HCO3- transporter family		HCO3- transporter family;(source:Araport11)
AT4G32520.1	protein_coding	serine hydroxymethyltransferase 3	Encodes a serine hydroxymethyltransferase SHMT3 located in the plastid.	serine hydroxymethyltransferase 3;(source:Araport11)
AT4G32570.1	protein_coding	TIFY domain protein 8		TIFY domain protein 8;(source:Araport11)
AT4G25730.1	protein_coding	FtsJ-like methyltransferase family protein		FtsJ-like methyltransferase family protein;(source:Araport11)
AT4G25740.1	protein_coding	RNA binding Plectin/S10 domain-containing protein		RNA binding Plectin/S10 domain-containing protein;(source:Araport11)
AT4G34960.1	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G34970.1	protein_coding	actin depolymerizing factor 9	A member of actin polymerizing factors (ADFs)family, ADF9 primarily functions as an actin bundling protein.	actin depolymerizing factor 9;(source:Araport11)
AT4G34980.1	protein_coding	subtilisin-like serine protease 2	Serine protease similar to subtilisin.	subtilisin-like serine protease 2;(source:Araport11)
AT4G34990.1	protein_coding	myb domain protein 32	Member of the R2R3 factor gene family.	myb domain protein 32;(source:Araport11)
AT4G35000.1	protein_coding	ascorbate peroxidase 3	Encodes a microsomal ascorbate peroxidase APX3.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.  The APX3 protein interacts with AKR2 (ankyrin-containing protein that interacts with AFT1) and AFT1, a 14-3-3 protein.	ascorbate peroxidase 3;(source:Araport11)
AT4G35010.1	protein_coding	beta-galactosidase 11	putative beta-galactosidase (BGAL11 gene)	beta-galactosidase 11;(source:Araport11)
AT4G35020.1	protein_coding	RAC-like 3	A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.	RAC-like 3;(source:Araport11)
AT4G27390.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G27400.1	protein_coding	Late embryogenesis abundant (LEA) protein-related		Late embryogenesis abundant (LEA) protein-like protein;(source:Araport11)
AT4G27320.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT4G27330.1	protein_coding	sporocyteless (SPL)	Encodes a putative transcription factor that is required for the initiation of both micro- and megagametogenesis and is expressed in the sporogenous tissue of the anther and the ovule.  SPL is a chalaza identity gene that share overlapping functions in establishing the prospective chalaza of the ovule.  It also plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes in the ovule and generally interacts with YABBY proteins in vitro. Mutant is defective in the differentiation of primary sporogenous cells into microsporocytes, and does not properly form the anther wall. Regulator of anther cell differenctiation. Interacts with TPL and TCP proteins.	sporocyteless (SPL);(source:Araport11)
AT4G27340.1	protein_coding	Met-10+ like family protein		Met-10+ like family protein;(source:Araport11)
AT4G27350.1	protein_coding	Protein of unknown function (DUF1223)		membrane lipoprotein lipid attachment site-like protein, putative (DUF1223);(source:Araport11)
AT4G27360.1	protein_coding	Dynein light chain type 1 family protein		Dynein light chain type 1 family protein;(source:Araport11)
AT4G27370.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	member of Myosin-like proteins	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G27380.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G30850.1	protein_coding	heptahelical transmembrane  protein2	heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors	heptahelical transmembrane protein2;(source:Araport11)
AT4G30860.1	protein_coding	SET domain group 4	Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects.	SET domain group 4;(source:Araport11)
AT4G30870.1	protein_coding	Restriction endonuclease, type II-like superfamily protein	Encodes an Arabidopsis homolog of the endonuclease MSU81.  T-DNA insertion lines of AtMSU81 have a deficiency in homologous recombination in somatic cells but only after genotoxic stress. Crosses with a hyperrecombinogenic mutant of the AtRecQ4A helicase resulted in synthetic lethality in the double mutant. Involved in DNA-Protein crosslink (DPC) repair in independent pathways to WSS1A and TDP1.	Restriction endonuclease, type II-like superfamily protein;(source:Araport11)
AT4G30800.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT4G30810.1	protein_coding	serine carboxypeptidase-like 29		serine carboxypeptidase-like 29;(source:Araport11)
AT4G30820.1	protein_coding	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related		cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30830.1	protein_coding	Protein of unknown function, DUF593		myosin-like protein (Protein of unknown function, DUF593);(source:Araport11)
AT4G30840.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G22380.1	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT4G22620.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G22630.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G22640.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G22650.1	protein_coding			lipid transfer protein;(source:Araport11)
AT4G22660.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT4G22820.1	protein_coding	A20/AN1-like zinc finger family protein	A member of the A20/AN1 zinc finger protein family involved in stress response.Expression is increased in response to water, salt , pathogen and other stressors.SAP9 can  pull down both K48-linked and K63- linked tetraubiquitin chains and functions as a E3 ubiquitin ligase suggesting a role in proteasome-dependent protein degradation.	A20/AN1-like zinc finger family protein;(source:Araport11)
AT4G22830.1	protein_coding			YCF49-like protein;(source:Araport11)
AT4G22840.1	protein_coding	Sodium Bile acid symporter family		Sodium Bile acid symporter family;(source:Araport11)
AT4G22850.1	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT4G35060.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G35070.1	protein_coding	SBP (S-ribonuclease binding protein) family protein		SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT4G35220.1	protein_coding	Cyclase family protein		Cyclase family protein;(source:Araport11)
AT4G35080.1	protein_coding	high-affinity nickel-transport family protein		high-affinity nickel-transport family protein;(source:Araport11)
AT4G35230.1	protein_coding	BR-signaling kinase 1	Encodes BR-signaling kinase 1 (BSK1), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710).  Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1.  Plasma membrane localized.	BR-signaling kinase 1;(source:Araport11)
AT4G35090.1	protein_coding	catalase 2	Encodes a peroxisomal catalase, highly expressed in bolts and leaves.  mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2  sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene.  Note that in Queval et al. (2007) Plant Journal, 52(4):640, SALK_057998 is named as cat2-1, SALK_076998 is named as cat2-2; in Bueso et al. (2007) Plant Journal, 52(6):1052, SALK_076998 is named as cat2-1. TAIR has adopted the nomenclature consistent with that in Bueso et al. (2007) after consultation with the authors: SALK_076998 (cat2-1), SALK_057998 (cat2-2).	catalase 2;(source:Araport11)
AT4G35100.1	protein_coding	plasma membrane intrinsic protein 3	a member of the plasma membrane intrinsic protein PIP. functions as aquaporin. Salt-stress-inducible MIP	plasma membrane intrinsic protein 3;(source:Araport11)
AT4G35110.1	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G35030.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G35050.1	protein_coding	Transducin family protein / WD-40 repeat family protein	Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G35120.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G35040.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	Basic-region leucine zipper  (bZIP19) transcription factor involved in the adaptation to zinc deficiency. Binds ZDRE motifs.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT4G35130.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G28130.1	protein_coding	diacylglycerol kinase 6		diacylglycerol kinase 6;(source:Araport11)
AT4G21070.1	protein_coding	breast cancer susceptibility1	Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.	breast cancer susceptibility1;(source:Araport11)
AT4G02510.1	protein_coding	translocon at the outer envelope membrane of chloroplasts 159	An integral membrane GTPase that functions as a transit-sequence receptor required for the import of proteins necessary for chloroplast biogenesis. Located in the outer chloroplast membrane. Phosphorylation of the G-domains regulate translocon assembly. The mRNA is cell-to-cell mobile.	translocon at the outer envelope membrane of chloroplasts 159;(source:Araport11)
AT4G02490.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.3e-36 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT4G02500.1	protein_coding	UDP-xylosyltransferase 2	Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides. The mRNA is cell-to-cell mobile.	UDP-xylosyltransferase 2;(source:Araport11)
AT4G26680.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G26470.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT4G26690.1	protein_coding	PLC-like phosphodiesterase family protein	Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.	PLC-like phosphodiesterase family protein;(source:Araport11)
AT4G26480.1	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT4G26490.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT4G26500.1	protein_coding	chloroplast sulfur E	Sulfur acceptor that interacts with and activates the cysteine desulfurases, AtSufS in plastids and AtNifS1 in mitochondria, and both activations are vital during embryogenesis. Dual localization in mitochondria and chloroplasts. Involved in Fe-S cluster biogenesis in mitochondria and plastids. Expressed in all major tissues, with higher expression in green parts. Its expression is light-dependent and regulated at the mRNA level. Activates the cysteine  desulfurase activity of CpNifS for chloroplastic iron-sulfur cluster  biogenesis.	chloroplast sulfur E;(source:Araport11)
AT4G26520.1	protein_coding	Aldolase superfamily protein		Aldolase superfamily protein;(source:Araport11)
AT4G26530.1	protein_coding	Aldolase superfamily protein		Aldolase superfamily protein;(source:Araport11)
AT4G26560.1	protein_coding	calcineurin B-like protein 7	Encodes calcineurin B-like protein 7 (CBL7).Interacts with and modulates  the activity of the PM ATPase AHA2.	calcineurin B-like protein 7;(source:Araport11)
AT4G26670.1	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein		Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT4G26550.1	protein_coding	Got1/Sft2-like vescicle transport protein family		Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT4G33530.1	protein_coding	K+ uptake permease 5	potassium transporter	K+ uptake permease 5;(source:Araport11)
AT4G29770.1	protein_coding		Target of trans acting-siR480/255. Testing.	target of trans acting-siR480/255 protein;(source:Araport11)
AT4G08080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), similar to a family of Arabidopsis thaliana hypothetical proteins with similarity to a Vicia faba retrotransposon-like gene;(source:TAIR10)
AT4G00990.1	protein_coding	Transcription factor jumonji (jmjC) domain-containing protein	jJumonji-domain-containing H3K9 histone demethylase. Loss of function mutants are susceptible to bacterial infection and early flowering.	Transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT4G19070.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT4G19080.1	protein_coding	Protein of unknown function (DUF594)		hypothetical protein (DUF594);(source:Araport11)
AT4G19090.1	protein_coding	Protein of unknown function (DUF594)		transmembrane protein, putative (DUF594);(source:Araport11)
AT4G19050.1	protein_coding	NB-ARC domain-containing disease resistance protein		NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT4G19060.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G35920.1	protein_coding	PLAC8 family protein	Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium.	PLAC8 family protein;(source:Araport11)
AT4G35930.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G35940.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G35950.1	protein_coding	RAC-like 6	A member of ROP GTPases gene family-like. GTP binding protein Arac6.	RAC-like 6;(source:Araport11)
AT4G35880.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G35970.1	protein_coding	ascorbate peroxidase 5	Encodes a microsomal ascorbate peroxidase APX5.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	ascorbate peroxidase 5;(source:Araport11)
AT4G35890.1	protein_coding	winged-helix DNA-binding transcription factor family protein	Encodes a cytoplasmic LAM domain containing protein that is involved in leaf senescence. The mRNA is cell-to-cell mobile.	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT4G36130.1	protein_coding	Ribosomal protein L2 family		Ribosomal protein L2 family;(source:Araport11)
AT4G35980.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G35900.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	bZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT4G35910.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	Encodes a cytoplasmic thiouridylase that is essential for tRNA thiolation. Its activity appears to be important in root development.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT4G39720.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT4G39640.1	protein_coding	gamma-glutamyl transpeptidase 1	The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is  located in  vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.	gamma-glutamyl transpeptidase 1;(source:Araport11)
AT4G39730.1	protein_coding	Lipase/lipooxygenase, PLAT/LH2 family protein	PLAT1 domain stress protein family member. Involved in mediating response to stresses such as pathogen infection. It is found in endoplasmic reticulum bodies. PLAT1 is induced by pathogenic fungi and induces the production of scopolin.	Lipase/lipooxygenase, PLAT/LH2 family protein;(source:Araport11)
AT4G39650.1	protein_coding	gamma-glutamyl transpeptidase 2	The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the apoplast of young siliques (within the ovules of the carpel) and is involved in the degradation of glutathione. The encoded enzyme also acts as part of a GSH pumping gamma-glutamyl cycle in this tissue and may also be involved in gamma-glutamyl amino acid formation.	gamma-glutamyl transpeptidase 2;(source:Araport11)
AT4G39660.1	protein_coding	alanine:glyoxylate aminotransferase 2	alanine:glyoxylate aminotransferase 2 homolog (AGT2). The mRNA is cell-to-cell mobile.	alanine:glyoxylate aminotransferase 2;(source:Araport11)
AT4G39670.1	protein_coding	Glycolipid transfer protein (GLTP) family protein		Glycolipid transfer protein (GLTP) family protein;(source:Araport11)
AT4G39680.1	protein_coding	SAP domain-containing protein		SAP domain-containing protein;(source:Araport11)
AT4G39690.1	protein_coding		Encodes a homolog of the yeast mic60 protein that is localized in the inner membrane of the mitochondrion, interacts with Tom40 as part of a large lipid-enriched complex called the mitochondrial transmembrane lipoprotein complex (MTL) and is involved in mitochondrial lipid trafficking.	MICOS complex subunit;(source:Araport11)
AT4G39700.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G39710.1	protein_coding	FK506-binding protein 16-2		FK506-binding protein 16-2;(source:Araport11)
AT4G24180.1	protein_coding	THAUMATIN-LIKE PROTEIN 1	Root-specific expression activated in response to rhizobacteria and ACC. Role in induced systemic resistance.	THAUMATIN-LIKE PROTEIN 1;(source:Araport11)
AT4G24490.1	protein_coding	RAB geranylgeranyl transferase alpha subunit 1		RAB geranylgeranyl transferase alpha subunit 1;(source:Araport11)
AT4G11000.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G11010.1	protein_coding	nucleoside diphosphate kinase 3	nucleoside diphosphate kinase 3 (ndpk3), located to the inter-membrane space in mitochondria	nucleoside diphosphate kinase 3;(source:Araport11)
AT4G11020.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G11210.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT4G39100.1	protein_coding	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein	Encodes a plant-specific histone reader capable of recognizing both H3K27me3 and H3K4me3 via its bromo-adjacent homology (BAH) and plant homeodomain (PHD) domains, respectively. Detailed biochemical and structural studies suggest a binding mechanism that is mutually exclusive for either H3K4me3 or H3K27me3. SHL plays a role in the repression of flowering.	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT4G26360.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.9e-40 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G26370.1	protein_coding	antitermination NusB domain-containing protein		antitermination NusB domain-containing protein;(source:Araport11)
AT4G26380.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G26390.1	protein_coding	Pyruvate kinase family protein		Pyruvate kinase family protein;(source:Araport11)
AT4G26170.1	protein_coding		ET1 is a DNA and Zinc binding domain containing protein involved in DNA methylation.	transcription factor;(source:Araport11)
AT4G26180.1	protein_coding	Mitochondrial substrate carrier family protein	Encodes a mitochondrial CoA transporter.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G26190.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT4G09660.1	protein_coding			zinc finger MYM-type-like protein;(source:Araport11)
AT4G09670.1	protein_coding	Oxidoreductase family protein		Oxidoreductase family protein;(source:Araport11)
AT4G09680.1	protein_coding	conserved telomere maintenance component 1	Encodes CTC1 (Conserved Telomere Maintenance Component 1) involved in telomere maintenance.	conserved telomere maintenance component 1;(source:Araport11)
AT4G09690.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G09550.1	protein_coding	AtGCP3 interacting protein 1	Encodes a gamma-tubulin complex protein that plays a role in gamma-tubulin complex localization, spindle stability and chromosomal segregation.	AtGCP3 interacting protein 1;(source:Araport11)
AT4G09540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.7e-43 P-value blast match to GB:AAC64917 gag-pol polyprotein (Ty1_Copia-element) (Glycine max);(source:TAIR10)
AT4G11940.1	protein_coding		Encodes a nuclear localized dosage sensitive paternally expressed imprinted gene. It is a member of a family of molecular chaperones called J-domain. Loss of ADM function suppresses seed abortion of triploid embryos and also partially rescues the effect of mea mutations.	hypothetical protein;(source:Araport11)
AT4G11950.1	protein_coding	Protein of unknown function (DUF1191)		transmembrane protein, putative (DUF1191);(source:Araport11)
AT4G04510.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 38	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 38;(source:Araport11)
AT4G04520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-26 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT4G04530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G05280.1);(source:TAIR10)
AT4G04540.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 39	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 39;(source:Araport11)
AT4G37710.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT4G37720.1	protein_coding	phytosulfokine 6 precursor	Probable phytosulfokines 6 precursor, coding for a unique plant peptide growth factor.	phytosulfokine 6 precursor;(source:Araport11)
AT4G37700.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G27520.1	protein_coding	early nodulin-like protein 2		early nodulin-like protein 2;(source:Araport11)
AT4G27530.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G27540.1	protein_coding	prenylated RAB acceptor 1.H		prenylated RAB acceptor 1.H;(source:Araport11)
AT4G27760.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes an oxidoreductase required for vegetative shoot apex development.  Mutants display disruptions in leaf positioning and meristem maintenance.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G02200.1	protein_coding	Drought-responsive family protein		Drought-responsive family protein;(source:Araport11)
AT4G02210.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT4G02220.1	protein_coding	zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein		zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein;(source:Araport11)
AT4G25320.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT4G25330.1	protein_coding			SAWADEE protein;(source:Araport11)
AT4G23810.1	protein_coding	WRKY family transcription factor	member of WRKY Transcription Factor; Group III	WRKY family transcription factor;(source:Araport11)
AT4G23820.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G05010.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G05020.1	protein_coding	NAD(P)H dehydrogenase B2	Miitochondrial alternative NADH dehydrogenase.	NAD(P)H dehydrogenase B2;(source:Araport11)
AT4G05030.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT4G05050.1	protein_coding	ubiquitin 11	polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14.  Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.	ubiquitin 11;(source:Araport11)
AT4G05040.1	protein_coding	ankyrin repeat family protein		ankyrin repeat family protein;(source:Araport11)
AT4G05060.1	protein_coding	PapD-like superfamily protein		PapD-like superfamily protein;(source:Araport11)
AT4G04980.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G05070.1	protein_coding	Wound-responsive family protein	Member of the wound-induced polypeptide (WIP) family. Positively regulates plant resistance against Pst DC3000 by enhancing PTI responses.	Wound-responsive family protein;(source:Araport11)
AT4G04990.1	protein_coding	Protein of unknown function (DUF761)		serine/arginine repetitive matrix-like protein (DUF761);(source:Araport11)
AT4G05080.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G05000.1	protein_coding	Vacuolar protein sorting-associated protein VPS28 family protein		Vacuolar protein sorting-associated protein VPS28 family protein;(source:Araport11)
AT4G08590.1	protein_coding	ORTHRUS-like		ORTHRUS-like protein;(source:Araport11)
AT4G08690.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT4G08980.1	protein_coding	F-BOX WITH WD-40 2	Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response. It is a F-box subunit of the SCF E3 ubiquitin ligase complex that mediates the degradation of 14-3-3 proteins.	F-BOX WITH WD-40 2;(source:Araport11)
AT4G08970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.1e-28 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G12380.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G12390.1	protein_coding	pectin methylesterase inhibitor 1		pectin methylesterase inhibitor 1;(source:Araport11)
AT4G12400.1	protein_coding	stress-inducible protein, putative	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	stress-inducible protein;(source:Araport11)
AT4G12410.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G12140.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G12150.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G12160.1	pseudogene			pseudogene of Ribosomal protein S4;(source:Araport11)
AT4G10550.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G10650.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G10660.1	protein_coding	CDC68-related		CDC68-like protein;(source:Araport11)
AT4G10670.1	protein_coding	GTC2	Homologous to yeast SPT16, a general chromatin factor required for transcription	GTC2;(source:Araport11)
AT4G10680.1	protein_coding	transcription factor IIB (TFIIB) family protein		transcription factor IIB (TFIIB) family protein;(source:Araport11)
AT4G10690.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.5e-256 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT4G03100.1	protein_coding	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain		Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein;(source:Araport11)
AT4G03110.1	protein_coding	RNA-binding protein-defense related 1	Encodes a putative RNA-binding protein that is located in the cytoplasm and is involved in the hypersensitive response and positively regulates salicylic acid-mediated immunity.	RNA-binding protein-defense related 1;(source:Araport11)
AT4G34440.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT4G34450.1	protein_coding	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative		coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP;(source:Araport11)
AT4G34740.1	protein_coding	GLN phosphoribosyl pyrophosphate amidotransferase 2	Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage. Plays role in differential development of vascular-associated cells. Demonstrates a cell-specific difference in chloroplast development.Mutant leaves are highly reticulate with a green vascular pattern.	GLN phosphoribosyl pyrophosphate amidotransferase 2;(source:Araport11)
AT4G34750.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G34760.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G28690.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G28560.1	protein_coding	ROP-interactive CRIB motif-containing protein 7	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC6 and RIC8 (subfamily group II). Gene is  expressed in all tissues examined.	ROP-interactive CRIB motif-containing protein 7;(source:Araport11)
AT4G39800.1	protein_coding	myo-inositol-1-phosphate synthase 1	** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocalization experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	myo-inositol-1-phosphate synthase 1;(source:Araport11)
AT4G39810.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT4G39820.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G39830.1	protein_coding	Cupredoxin superfamily protein	role in the degradation of ascorbate to (mono)dehydroascorbate	Cupredoxin superfamily protein;(source:Araport11)
AT4G02720.1	protein_coding		Encodes an ortholog of NKAP (NF-kB activating protein), that interacts with splicing and ribosome biogenesis proteins, colocalizes with the 45S rDNA at the nucleolar organizer regions (NORs) and negatively regulates 45S rDNA expression.	Ras-induced vulval development antagonist protein;(source:Araport11)
AT4G02730.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G02910.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G02920.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G02930.1	protein_coding	GTP binding Elongation factor Tu family protein		GTP binding Elongation factor Tu family protein;(source:Araport11)
AT4G19460.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G09900.1	protein_coding	methyl esterase 12	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	methyl esterase 12;(source:Araport11)
AT4G10070.1	protein_coding	KH domain-containing protein		KH domain-containing protein;(source:Araport11)
AT4G10080.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G09920.1	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT4G10040.1	protein_coding	cytochrome c-2	Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers. Double mutants with CYTC-1 accumulate starch during the day, have delayed growth and development and reduced GA and DELLA proteins linking cellular metabolism and GA homeostasis.	cytochrome c-2;(source:Araport11)
AT4G10050.1	protein_coding	esterase/lipase/thioesterase family protein		esterase/lipase/thioesterase family protein;(source:Araport11)
AT4G10060.1	protein_coding	Beta-glucosidase, GBA2 type family protein		Beta-glucosidase, GBA2 type family protein;(source:Araport11)
AT4G09880.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G09890.1	protein_coding	Protein of unknown function (DUF3511)		mediator of RNA polymerase II transcription subunit, putative (DUF3511);(source:Araport11)
AT4G03560.1	protein_coding	two-pore  channel 1	Encodes a depolarization-activated Ca(2+) channel. Anti-sense experiments with this gene as well as Sucrose-H(+) symporters and complementation of yeast sucrose uptake mutant cch1 suggest that this protein mediates a voltage-activated Ca(2+ )influx. Mutants lack detectable SV channel activity suggesting TPC1 is essential component of the SV channel. Patch clamp analysis of loss of function mutation indicates TPC1 does not affect Ca2+ signaling in response to abiotic and biotic stress.	two-pore channel 1;(source:Araport11)
AT4G03520.1	protein_coding	Thioredoxin superfamily protein	Encodes a redox activated co-chaperone, chloroplast localized thioredoxin, similar to prokaryotic types.	Thioredoxin superfamily protein;(source:Araport11)
AT4G03530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.4e-66 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G03540.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G03550.1	protein_coding	glucan synthase-like 5	Encodes a callose synthase that is required for wound and papillary callose formation in response to fungal pathogens Erysiphe and Blumeria.  Mutants are resistant to P. parasitica and exhibit an exaggerated PR1 response.Contributes to PAMP-induced basal defense. The mRNA is cell-to-cell mobile.	glucan synthase-like 5;(source:Araport11)
AT4G17830.1	protein_coding	Peptidase M20/M25/M40 family protein	NAOD encodes a functional acetylornithine deacetylase. Silenced lines plants flower early but have reduced fertility (siliques do not develop) as well as reduced ornithine levels.NAOD mediates a linear pathway for ornithine biosynthesis.	Peptidase M20/M25/M40 family protein;(source:Araport11)
AT4G21400.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 28	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 28;(source:Araport11)
AT4G21410.1	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 29	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 29;(source:Araport11)
AT4G21420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.9e-06 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G21430.1	protein_coding	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase		protein B160;(source:Araport11)
AT4G21440.1	protein_coding	MYB-like 102	Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family.	MYB-like 102;(source:Araport11)
AT4G21280.1	protein_coding	photosystem II subunit QA	Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.	photosystem II subunit QA;(source:Araport11)
AT4G01760.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G01770.1	protein_coding	rhamnogalacturonan xylosyltransferase 1	Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the <i>O</i>-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT1 protein might be involved in the synthesis of the &alpha;-D-Xyl-(1,3)-&alpha;-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II.	rhamnogalacturonan xylosyltransferase 1;(source:Araport11)
AT4G01780.1	protein_coding	XH/XS domain-containing protein		XH/XS domain-containing protein;(source:Araport11)
AT4G01790.1	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT4G01750.1	protein_coding	rhamnogalacturonan xylosyltransferase 2	Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the <i>O</i>-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT2 protein might be involved in the synthesis of the &alpha;-D-Xyl-(1,3)-&alpha;-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II. The mRNA is cell-to-cell mobile.	rhamnogalacturonan xylosyltransferase 2;(source:Araport11)
AT4G02000.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT4G09140.1	protein_coding	MUTL-homologue 1	Encodes a protein with similarity to Mut1 DNA mismatch repair protein, from E.coli. The protein is expressed during prophase I of meiosis, colocalizes with MLH3 throughout pachytene and is dependent on MLH3 for proper localization.	MUTL-homologue 1;(source:Araport11)
AT4G09080.1	protein_coding	Outer membrane OMP85 family protein	Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Knockout mutants have abnormal etioplasts.	Outer membrane OMP85 family protein;(source:Araport11)
AT4G09090.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT4G09150.1	protein_coding	T-complex protein 11		T-complex protein 11;(source:Araport11)
AT4G09100.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G09190.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G09110.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G09200.1	protein_coding	SPla/RYanodine receptor (SPRY) domain-containing protein		SPla/RYanodine receptor (SPRY) domain-containing protein;(source:Araport11)
AT4G09120.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G09210.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G09040.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G09230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G09070.1	protein_coding	TATA-binding related factor (TRF) of subunit 20 of Mediator complex		TATA-binding related factor (TRF) of subunit 20 of Mediator complex;(source:Araport11)
AT4G09130.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G09060.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G21950.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G21960.1	protein_coding	Peroxidase superfamily protein	Encodes AT4g21960 (AT4g21960/T8O5_170). The mRNA is cell-to-cell mobile.	Peroxidase superfamily protein;(source:Araport11)
AT4G21970.1	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT4G21920.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G21930.1	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT4G21940.1	protein_coding	calcium-dependent protein kinase 15	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 15;(source:Araport11)
AT4G38660.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT4G38840.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G38670.1	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT4G38850.1	protein_coding	SAUR-like auxin-responsive protein family 	mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.	SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G38680.1	protein_coding	glycine rich protein 2	Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.	glycine rich protein 2;(source:Araport11)
AT4G38860.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G38690.1	protein_coding	PLC-like phosphodiesterases superfamily protein		PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT4G38870.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G38700.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT4G38880.1	protein_coding	GLN phosphoribosyl pyrophosphate amidotransferase 3	GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2	GLN phosphoribosyl pyrophosphate amidotransferase 3;(source:Araport11)
AT4G38620.1	protein_coding	myb domain protein 4	Encodes a R2R3 MYB protein which is involved in the response to UV-B.  It functions as a repressor of target gene expression.  One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2. The mRNA is cell-to-cell mobile.	myb domain protein 4;(source:Araport11)
AT4G38890.1	protein_coding	FMN-linked oxidoreductases superfamily protein		FMN-linked oxidoreductases superfamily protein;(source:Araport11)
AT4G38710.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G38900.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein. Mutants show defects in growth and development of reproductive structures.		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT4G38630.1	protein_coding	regulatory particle non-ATPase 10	Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities	regulatory particle non-ATPase 10;(source:Araport11)
AT4G38650.1	protein_coding	Glycosyl hydrolase family 10 protein		Glycosyl hydrolase family 10 protein;(source:Araport11)
AT4G38640.1	protein_coding	Plasma-membrane choline transporter family protein		Plasma-membrane choline transporter family protein;(source:Araport11)
AT4G18170.1	protein_coding	WRKY DNA-binding protein 28	Member of WRKY Transcription Factor; Group II-c.  Involved in the activation of salicylic acid biosynthesis genes ICS1 and PBS3. In the ovule, it is expressed in hypodermal somatic cells and appears to play a role in supression of megasporocyte cell fate.	WRKY DNA-binding protein 28;(source:Araport11)
AT4G18180.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G18190.1	protein_coding	purine permease 6	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 6;(source:Araport11)
AT5G03280.1	protein_coding	NRAMP metal ion transporter family protein	Involved in ethylene signal transduction. Acts downstream of CTR1. Positively regulates ORE1 and negatively regulates mir164A,B,C to regulate leaf senescence. A maternally expressed imprinted gene. Mutations in ein2 block ethylene stimulation of flavonol synthesis. The mRNA is cell-to-cell mobile.	NRAMP metal ion transporter family protein;(source:Araport11)
AT5G03290.1	protein_coding	isocitrate dehydrogenase V	Encodes a catalytic subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase. The mRNA is cell-to-cell mobile.	isocitrate dehydrogenase V;(source:Araport11)
AT5G27910.1	protein_coding	nuclear factor Y, subunit C8		nuclear factor Y, subunit C8;(source:Araport11)
AT5G27920.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G27930.1	protein_coding	Protein phosphatase 2C family protein	EGR2 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress. EGR2 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT5G03580.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G27500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43920.1);(source:TAIR10)
AT5G27510.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G27550.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G27520.1	protein_coding	peroxisomal adenine nucleotide carrier 2	encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.	peroxisomal adenine nucleotide carrier 2;(source:Araport11)
AT5G27530.1	protein_coding	Pectin lyase-like superfamily protein	Member of pectin lyase gene family.	Pectin lyase-like superfamily protein;(source:Araport11)
AT5G27450.1	protein_coding	mevalonate kinase	Encodes a protein with mevalonate kinase activity involved in the mevalonate pathway.	mevalonate kinase;(source:Araport11)
AT5G27540.1	protein_coding	MIRO-related GTP-ase 1	Encodes a protein with similarity to GTPases that is localized to the mitochondrion. Involved in embryogenesis, pollen tube growth and required for mitochondrial development.	MIRO-related GTP-ase 1;(source:Araport11)
AT5G27460.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G27470.1	protein_coding	seryl-tRNA synthetase / serine--tRNA ligase		seryl-tRNA synthetase / serine-tRNA ligase;(source:Araport11)
AT5G27480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, putative replication proteins - Arabidopsis thaliana;(source:TAIR10)
AT5G27490.1	protein_coding	Integral membrane Yip1 family protein		Integral membrane Yip1 family protein;(source:Araport11)
AT5G25270.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G11410.1	protein_coding	Protein kinase superfamily protein	Similar to receptor like kinase but does not appear to have kinase activity. It is involved in HopZ1a effector triggered immunity. Interacts with ZAR1 and ZED1.Localization to membrane is dependent on N-terminal myristoylation domain	Protein kinase superfamily protein;(source:Araport11)
AT5G11420.1	protein_coding	Protein of unknown function, DUF642	Encodes a DUF642 cell wall protein.	transmembrane protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT5G32600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1);(source:TAIR10)
AT5G28920.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G28910.1	protein_coding			alpha-(1,6)-fucosyltransferase;(source:Araport11)
AT5G04090.1	protein_coding	Plant protein 1589 of unknown function		histidine-tRNA ligase;(source:Araport11)
AT5G04060.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G04070.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G04080.1	protein_coding			cysteine-rich TM module stress tolerance protein;(source:Araport11)
AT5G15120.1	protein_coding	Protein of unknown function (DUF1637)		2-aminoethanethiol dioxygenase, putative (DUF1637);(source:Araport11)
AT5G02980.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G02990.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		galactose oxidase/kelch repeat protein;(source:Araport11)
AT5G03000.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G03010.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G03020.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G54390.1	protein_coding	HAL2-like	Encodes a 3'-phosphoadenosine-5'-phosphate (PAP) phosphatase that is sensitive to physiological concentrations of Na+.  It does not also act as inositol polyphosphate 1-phosphatases, which other members of the HAL2-like family do.  It is proposed that AHL acts in concert with sulphotransferases to prevent both the toxicity of PAP on RNA processing enzymes as well as the product inhibition of PAP on sulphate conjugation. The mRNA is cell-to-cell mobile.	HAL2-like protein;(source:Araport11)
AT5G54400.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G46550.1	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT5G06060.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G38000.1	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G38010.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G59020.1	protein_coding	Protein of unknown function (DUF3527)		hepatocyte growth factor activator, putative (DUF3527);(source:Araport11)
AT5G59030.1	protein_coding	copper transporter 1	encodes a putative copper transport protein that contains copper-binding motif and functionally complements in copper-transport defective yeast strains	copper transporter 1;(source:Araport11)
AT5G66370.1	protein_coding			metal ion-binding protein;(source:Araport11)
AT5G66380.1	protein_coding	folate transporter 1	Encodes a folate transporter that is located in the chloroplast envelope and is able to mediate exogenous folate uptake when expressed in E. coli.  However, this is not the sole folate transporter for chloroplasts as null mutants of this gene have no discernible phenotype when grown under folate-sufficient conditions and contained wild-type levels of folates in leaves.	folate transporter 1;(source:Araport11)
AT5G66390.1	protein_coding	Peroxidase superfamily protein	Encodes a peroxidase that is involved in lignin biosynthesis.	Peroxidase superfamily protein;(source:Araport11)
AT5G66400.1	protein_coding	Dehydrin family protein	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein.  The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway.  RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.	Dehydrin family protein;(source:Araport11)
AT5G49080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT5G06640.1);(source:TAIR10)
AT5G49090.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54955.1);(source:TAIR10)
AT5G49060.1	protein_coding	Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)		DnaJ heat shock amino-terminal domain protein (DUF1977);(source:Araport11)
AT5G49070.1	protein_coding	3-ketoacyl-CoA synthase 21	Encodes KCS21, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 21;(source:Araport11)
AT5G45060.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G65510.1	protein_coding	AINTEGUMENTA-like 7	Encodes one of three PLETHORA transcription factors required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions.	AINTEGUMENTA-like 7;(source:Araport11)
AT5G65520.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G65530.1	protein_coding	Protein kinase superfamily protein	Encodes a protein kinase involved in mediating resistance to fungi and also trichome branch number. Kinase activity is increased by ROP6 which also affects its sub-cellular localization  (becomes localized to the cell periphery_	Protein kinase superfamily protein;(source:Araport11)
AT5G58040.1	protein_coding	homolog of yeast FIP1 [V]	Encodes a subunit of the polyadenylation apparatus that interacts with and stimulates the activity of poly(A) polymerase.  Additionally , it interacts with several polyadenylation factor subunits and is an RNA-binding protein.  It is suggested that this protein coordinates a number of polyadenylation factor subunits with PAP and with RNA. The mRNA is cell-to-cell mobile.	FIP1[V]-like protein;(source:Araport11)
AT5G58030.1	protein_coding	Transport protein particle (TRAPP) component	Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	Transport protein particle (TRAPP) component;(source:Araport11)
AT5G49150.1	protein_coding	gamete expressed 2	Encodes a transmembrane domain containing protein expressed in sperm cells. Target promoter of the male germline-specific transcription factor DUO1.	gamete expressed 2;(source:Araport11)
AT5G37860.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G37850.1	protein_coding	pfkB-like carbohydrate kinase family protein	Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT5G65840.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT5G65850.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G65860.1	protein_coding	ankyrin repeat family protein		ankyrin repeat family protein;(source:Araport11)
AT5G65870.1	protein_coding	phytosulfokine 5 precursor	Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor.	phytosulfokine 5 precursor;(source:Araport11)
AT5G44680.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT5G44840.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G44850.1	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT5G44860.1	protein_coding			polyadenylate-binding protein 1-B-binding protein;(source:Araport11)
AT5G48690.1	protein_coding			ubiquitin-associated (UBA)/TS-N domain protein;(source:Araport11)
AT5G48700.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G52290.1	protein_coding	shortage in chiasmata 1	Encodes a protein with similarity to  XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility.	shortage in chiasmata 1;(source:Araport11)
AT5G05230.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G05240.1	protein_coding	Uncharacterised conserved protein (UCP030365)		cation-transporting ATPase;(source:Araport11)
AT5G05250.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G05220.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G65960.1	protein_coding	GTP binding		GTP binding protein;(source:Araport11)
AT5G65970.1	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s	Seven transmembrane MLO family protein;(source:Araport11)
AT5G66250.1	protein_coding	kinectin-related		kinectin-like protein;(source:Araport11)
AT5G66260.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G66240.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a WD40-repeat protein that interacts with the E3 Cullin Ring Ligase subunit DDB1a and is involved in secondary wall modification and thickening by regulating the degradation of specific proteins. RNAi-mediated silencing results in anther indehiscence and infertility.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G49800.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT5G67260.1	protein_coding	CYCLIN D3;2	Encode CYCD3;2, a CYCD3 D-type cyclin.  Important for determining cell number in developing lateral organs and mediating cytokinin effects in apical growth and development. With PPD and NINJA, it plays a crucial role in leaf morphogenesis.	CYCLIN D3;(source:Araport11)
AT5G67270.1	protein_coding	end binding protein 1C	encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.	end binding protein 1C;(source:Araport11)
AT5G50890.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G50900.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G50870.1	protein_coding	ubiquitin-conjugating enzyme 27		ubiquitin-conjugating enzyme 27;(source:Araport11)
AT5G53850.1	protein_coding	haloacid dehalogenase-like hydrolase family protein	Encodes a trifunctional dehydratase / enolase / phosphatase involved in the methionine salvage.	haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT5G53860.1	protein_coding	embryo defective 2737	Encodes a plant-specific protein with a domain similar to the central cysteine-rich domain of DnaJ proteins. It is involved in chloroplast and leaf development.	embryo defective 2737;(source:Araport11)
AT5G50850.1	protein_coding	Transketolase family protein		Transketolase family protein;(source:Araport11)
AT5G50860.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G49350.1	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT5G49360.1	protein_coding	beta-xylosidase 1	Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification.  Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	beta-xylosidase 1;(source:Araport11)
AT5G49480.1	protein_coding	Ca2+-binding protein 1	AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl. The mRNA is cell-to-cell mobile.	Ca2+-binding protein 1;(source:Araport11)
AT5G67050.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G67060.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a bHLH transcription factor that is involved in transmitting tract and stigma development and acts as a local modulator of auxin and cytokinin responses to control gynoecium development. HEC1 affects auxin transport by acting as a transcriptional regulator of PIN1 and PIN3.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G22790.1	protein_coding	reticulata-related 1		reticulata-related 1;(source:Araport11)
AT5G67290.1	protein_coding	FAD-dependent oxidoreductase family protein		FAD-dependent oxidoreductase family protein;(source:Araport11)
AT5G67300.1	protein_coding	myb domain protein r1	Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli. The mRNA is cell-to-cell mobile.	myb domain protein r1;(source:Araport11)
AT5G67310.1	protein_coding	cytochrome P450, family 81, subfamily G, polypeptide 1	member of CYP81G	cytochrome P450, family 81, subfamily G, polypeptide 1;(source:Araport11)
AT5G60340.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a nuclear adenylate kinase that interacts with a putative homolog of Rps14, AtRPS14-1 and affects the elongation of cells in the stem.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G60350.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G60320.1	protein_coding	Concanavalin A-like lectin protein kinase family protein		Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G45250.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	RPS4 belongs to the Toll/interleukin-1 receptor (TIR)-nucleotide binding site (NBS)-Leu-rich repeat (LRR) class of disease resistance (R ) genes. Confers specific resistance to Pseudomonas syringae pv. tomato carrying the avirulence gene AvrRPS4. Produces alternative transcripts with truncated open reading frames.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G67460.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G67470.1	protein_coding	formin homolog 6		formin homolog 6;(source:Araport11)
AT5G49870.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT5G61900.1	protein_coding	Calcium-dependent phospholipid-binding Copine family protein	Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response.	Calcium-dependent phospholipid-binding Copine family protein;(source:Araport11)
AT5G61890.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G61710.1	protein_coding			cotton fiber protein;(source:Araport11)
AT5G61720.1	protein_coding	Protein of unknown function (DUF1216)		hypothetical protein (DUF1216);(source:Araport11)
AT5G08460.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G08470.1	protein_coding	peroxisome 1	an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.	peroxisome 1;(source:Araport11)
AT5G08480.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT5G08490.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G08500.1	protein_coding	Transmembrane CLPTM1 family protein		Transmembrane CLPTM1 family protein;(source:Araport11)
AT5G08510.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G08520.1	protein_coding	Duplicated homeodomain-like superfamily protein		Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT5G54750.1	protein_coding	Transport protein particle (TRAPP) component	Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	Transport protein particle (TRAPP) component;(source:Araport11)
AT5G54760.1	protein_coding	Translation initiation factor SUI1 family protein		Translation initiation factor SUI1 family protein;(source:Araport11)
AT5G54770.1	protein_coding	thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)	Encodes a thiamine biosynthetic gene that has a dual function in thiamine biosynthesis and mitochondrial DNA damage tolerance. It appears to be involved in producing the thiazole portion of thiamine (vitamin B1). A crystal structure of the protein reveals that it forms a 2-ring homo-octamer. The mRNA is cell-to-cell mobile.	thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4);(source:Araport11)
AT5G55040.1	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT5G55010.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G55020.1	protein_coding	myb domain protein 120	Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB120).	myb domain protein 120;(source:Araport11)
AT5G06150.1	protein_coding	Cyclin family protein	Encodes a cyclin whose expression is reduced in response to high salt.	Cyclin family protein;(source:Araport11)
AT5G06160.1	protein_coding	splicing factor-related	Encodes a protein with similarity to pre-mRNA splicing factor SF3a60 that is involved in gametic cell fate determination. Loss of function results in the ectopic expression of egg cell makers suggesting a role in restriction of gametic cell fate.  Expressed strongly in gametophytes and weakly in sporophytes.	splicing factor-like protein;(source:Araport11)
AT5G47930.1	protein_coding	Zinc-binding ribosomal protein family protein		Zinc-binding ribosomal protein family protein;(source:Araport11)
AT5G47940.1	protein_coding			40S ribosomal protein S27;(source:Araport11)
AT5G61490.1	protein_coding	Uncharacterised conserved protein (UCP012943)		transmembrane protein;(source:Araport11)
AT5G58150.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G45970.1	protein_coding	RAC-like 2	Encodes a Rac-like protein ARAC2.  A member of ROP GTPase gene family.	RAC-like 2;(source:Araport11)
AT5G45980.1	protein_coding	WUSCHEL related homeobox 8	Arabidopsis thaliana WOX8 protein. Contains similarity to homeodomain transcription factor.  Positively regulates early embryonic growth. Together with CLE8 it forms a signaling module that promotes seed growth and overall seed size.	WUSCHEL related homeobox 8;(source:Araport11)
AT5G55060.1	protein_coding			Rab3 GTPase-activating protein catalytic subunit;(source:Araport11)
AT5G55070.1	protein_coding	Dihydrolipoamide succinyltransferase		Dihydrolipoamide succinyltransferase;(source:Araport11)
AT5G56200.1	protein_coding	C2H2 type zinc finger transcription factor family	Encodes a transcription factor expressed in the female gametophyte.	C2H2 type zinc finger transcription factor family;(source:Araport11)
AT5G56210.1	protein_coding	WPP domain interacting protein 2	Encodes an outer nuclear membrane protein that anchors RanGAP1 to the nuclear envelope.  It interacts with SUN proteins and is required for maintaining the elongated nuclear shape of epidermal cells.	WPP domain interacting protein 2;(source:Araport11)
AT5G63340.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G63350.1	protein_coding		ABA&#8208;induced transcription repressor that acts as feedback regulator in ABA signalling.	von willebrand factor A domain protein;(source:Araport11)
AT5G63320.1	protein_coding	nuclear protein X1	Encodes NPX1 (Nuclear Protein X1), a nuclear factor regulating abscisic acid responses.	nuclear protein X1;(source:Araport11)
AT5G46200.1	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal proteinase-like protein (DUF239);(source:Araport11)
AT5G46210.1	protein_coding	cullin4	Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development.  This CUL4-based E3 ligase is essential for the repression of photomorphogenesis.  The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1.	cullin4;(source:Araport11)
AT5G42330.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G42340.1	protein_coding	Plant U-Box 15		Plant U-Box 15;(source:Araport11)
AT5G42540.1	protein_coding	exoribonuclease 2	Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN2 acts as a suppressor of posttranscriptional gene silencing.	exoribonuclease 2;(source:Araport11)
AT5G42560.1	protein_coding	Abscisic acid-responsive (TB2/DP1, HVA22) family protein		Abscisic acid-responsive (TB2/DP1, HVA22) family protein;(source:Araport11)
AT5G22770.1	protein_coding	alpha-adaptin		alpha-adaptin;(source:Araport11)
AT5G54380.1	protein_coding	protein kinase family protein	Encodes THESEUS1 (THE1), a receptor kinase regulated by Brassinosteroids and required for cell elongation during vegetative growth.	protein kinase family protein;(source:Araport11)
AT5G47980.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G03820.1	protein_coding	GDSL-like Lipase/Acylhydrolase family protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase family protein;(source:Araport11)
AT5G03780.1	protein_coding	TRF-like 10	Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.	TRF-like 10;(source:Araport11)
AT5G03830.1	protein_coding	CDK inhibitor P21 binding protein		CDK inhibitor P21 binding protein;(source:Araport11)
AT5G03790.1	protein_coding	homeobox 51	Encodes a homeodomain leucine zipper class I (HD-Zip I) meristem identity regulator that acts together with LFY to induce CAL expression.  It binds to the CAL promoter proximal CAATNATTG element.  LMI1 acts primarily downstream of LFY in meristem identity regulation.  The interaction between LFY, LMI1 and CAL resembles a feed-forward loop transcriptional network motif.  The gene also had additional LFY-independent roles in leaf morphogenesis and bract formation.	homeobox 51;(source:Araport11)
AT5G03840.1	protein_coding	PEBP (phosphatidylethanolamine-binding protein) family protein	Controls inflorescence meristem identity. Involved in the floral initiation process. Ortholog of the Antirrhinum gene CENTRORADIALIS (CEN). Involved in protein trafficking to the protein storage vacuole. TFL1 plays an antagonistic role to FT/TSF in the determination of inflorescence meristem identity.	PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11)
AT5G03740.1	protein_coding	histone deacetylase 2C	HD2-type histone deacetylase HDAC. Involved in the ABA and stress responses. Mediates transcriptional repression	histone deacetylase 2C;(source:Araport11)
AT5G03850.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT5G03750.1	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT5G03860.1	protein_coding	malate synthase	Encodes a protein with malate synthase activity.	malate synthase;(source:Araport11)
AT5G03760.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT5G03870.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT5G03770.1	protein_coding	KDO transferase A	Encodes a putative KDO (3-deoxy-D-manno-octulosonate) transferase	KDO transferase A;(source:Araport11)
AT5G03880.1	protein_coding	Thioredoxin family protein		Thioredoxin family protein;(source:Araport11)
AT5G03810.1	protein_coding	GDSL-like Lipase/Acylhydrolase family protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase family protein;(source:Araport11)
AT5G03890.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G03900.1	protein_coding	Iron-sulphur cluster biosynthesis family protein		Iron-sulfur cluster biosynthesis family protein;(source:Araport11)
AT5G35940.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT5G41240.1	protein_coding	glutathione S-transferase THETA 2	Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase THETA 2;(source:Araport11)
AT5G41250.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT5G41220.1	protein_coding	glutathione S-transferase THETA 3	Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase THETA 3;(source:Araport11)
AT5G61260.1	protein_coding	Plant calmodulin-binding protein-related		Plant calmodulin-binding protein-like protein;(source:Araport11)
AT5G61450.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G61240.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G61250.1	protein_coding	glucuronidase 1	Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-&#946;-GlcNAc attachment sites and serine-, threonine- and  tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted  (WoLF PSORT program) to be secreted.	glucuronidase 1;(source:Araport11)
AT5G50630.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G50800.1	protein_coding	Nodulin MtN3 family protein	Encodes a member of the SWEET sucrose efflux transporter family proteins, together with RPG1, it is involved in pollen development. Together with SWEET14, it is likely involved in modulating the GA response and is required  for  proper development of anthers, seeds and seedlings.	Nodulin MtN3 family protein;(source:Araport11)
AT5G50620.1	protein_coding	Molecular chaperone Hsp40/DnaJ family protein		Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT5G44410.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT5G45350.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT5G45360.1	protein_coding	F-box family protein	Encodes a F-box subunit of the SCF E3 ubiquitin ligase complex that mediates the degradation of 14-3-3 proteins.	F-box family protein;(source:Araport11)
AT5G45370.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G45570.1	protein_coding	Ulp1 protease family protein		Ulp1 protease family protein;(source:Araport11)
AT5G51470.1	protein_coding	Auxin-responsive GH3 family protein		Auxin-responsive GH3 family protein;(source:Araport11)
AT5G47700.1	protein_coding	60S acidic ribosomal protein family	Co-orthologous gene of large ribosomal subunit protein RPP1.	60S acidic ribosomal protein family;(source:Araport11)
AT5G47710.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G63810.1	protein_coding	beta-galactosidase 10	member of Glycoside Hydrolase Family 35	beta-galactosidase 10;(source:Araport11)
AT5G63820.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT5G63830.1	protein_coding	HIT-type Zinc finger family protein		HIT-type Zinc finger family protein;(source:Araport11)
AT5G63920.1	protein_coding	topoisomerase 3alpha	Encodes topoisomerase 3alpha.  Suppresses somatic crossovers.  Essential for resolution of meiotic recombination intermediates.	topoisomerase 3alpha;(source:Araport11)
AT5G60150.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G06250.1	protein_coding	AP2/B3-like transcriptional factor family protein	Transcription repressor involved in regulation of inflorescence architecture.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G06480.1	protein_coding	Immunoglobulin E-set superfamily protein		Immunoglobulin E-set superfamily protein;(source:Araport11)
AT5G06490.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G06500.1	protein_coding	AGAMOUS-like 96		AGAMOUS-like 96;(source:Araport11)
AT5G64040.1	protein_coding	photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)	Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex. Phosphorylation of this protein is dependent on calcium.	photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN);(source:Araport11)
AT5G64050.1	protein_coding	glutamate tRNA synthetase	Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	glutamate tRNA synthetase;(source:Araport11)
AT5G64060.1	protein_coding	NAC domain containing protein 103		NAC domain containing protein 103;(source:Araport11)
AT5G40790.1	protein_coding		ABA&#8208;induced transcription repressor that acts as feedback regulator in ABA signalling.	hypothetical protein;(source:Araport11)
AT5G48300.1	protein_coding	ADP glucose pyrophosphorylase  1	Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested. The mRNA is cell-to-cell mobile.	ADP glucose pyrophosphorylase 1;(source:Araport11)
AT5G51680.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G51690.1	protein_coding	1-amino-cyclopropane-1-carboxylate synthase 12	Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity.	1-amino-cyclopropane-1-carboxylate synthase 12;(source:Araport11)
AT5G42830.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G42650.1	protein_coding	allene oxide synthase	Encodes a member of the  cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity.  CFA-Leu, CFA-Val, CFA-Met and CFA-Ala can induce the expression of AOS.	allene oxide synthase;(source:Araport11)
AT5G41910.1	protein_coding	Mediator complex, subunit Med10		Mediator complex, subunit Med10;(source:Araport11)
AT5G41920.1	protein_coding	GRAS family transcription factor	Encodes a GRAS family transcription factor that is involved in bundle sheath cell fate specification.	GRAS family transcription factor;(source:Araport11)
AT5G41940.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT5G42210.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G48560.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G48380.1	protein_coding	BAK1-interacting receptor-like kinase 1	Encodes a BAK1-interacting receptor-like kinase named BIR1.  Negatively regulates multiple plant resistance signaling pathways, one of which is the SOBIR1(AT2G31880)-dependent pathway.	BAK1-interacting receptor-like kinase 1;(source:Araport11)
AT5G48550.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G37040.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G37050.1	protein_coding			sorting nexin;(source:Araport11)
AT5G37060.1	protein_coding	cation/H+ exchanger 24	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 24;(source:Araport11)
AT5G63050.1	protein_coding	embryo defective 2759		embryo defective 2759;(source:Araport11)
AT5G63060.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G63070.1	protein_coding	Ribosomal protein S19 family protein		Ribosomal protein S19 family protein;(source:Araport11)
AT5G05880.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a nicotinate-N-glycosyltransferase.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G05900.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G51870.1	protein_coding	AGAMOUS-like 71	Encodes a MADS-box transcription factor involved in floral transition.	AGAMOUS-like 71;(source:Araport11)
AT5G51880.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G54060.1	protein_coding	UDP-glucose:flavonoid 3-o-glucosyltransferase	Encodes a anthocyanin 3-O-glucoside: 2"-O-xylosyl-transferase involved in anthocyanin modification that converts cyanidin 3-O-glucoside to cyanidin 3-O-xylosyl(1->2)glucoside.  Its preferred sugar donor is UDP-xylose.	UDP-glucose:flavonoid 3-o-glucosyltransferase;(source:Araport11)
AT5G38810.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G38820.1	protein_coding	Transmembrane amino acid transporter family protein	Encodes a putative amino acid transporter.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT5G38800.1	protein_coding	basic leucine-zipper 43		basic leucine-zipper 43;(source:Araport11)
AT5G39730.1	protein_coding	AIG2-like (avirulence induced gene) family protein		AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT5G39740.1	protein_coding	ribosomal protein L5 B	Encodes a ribosomal protein RPL5B that is involved in ribosome biogenesis and plays a role in organ size control by promoting cell proliferation and preventing compensation in normal leaf development.	ribosomal protein L5 B;(source:Araport11)
AT5G39720.1	protein_coding	avirulence induced gene 2 like protein		avirulence induced protein 2 like protein;(source:Araport11)
AT5G39830.1	protein_coding	Trypsin family protein with PDZ domain	Encodes DEG8.  Forms a hexamer with DEG5 in the thylakoid lumen.  Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII).  Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II.	Trypsin family protein with PDZ domain-containing protein;(source:Araport11)
AT5G56510.1	protein_coding	pumilio 12	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 12;(source:Araport11)
AT5G56600.1	protein_coding	profilin 3	Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs. Mutants have slightly elongated petioles.	profilin;(source:Araport11)
AT5G56570.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G56580.1	protein_coding	MAP kinase kinase 6	Encodes a member of the MAP Kinase Kinase family of proteins. It can phosphorylate MPK12 in vitro and it can be dephosphorylated by MKP2 in vitro.	MAP kinase kinase 6;(source:Araport11)
AT5G56590.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G63390.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT5G63400.1	protein_coding	adenylate kinase 1	encodes a protein similar to adenylate kinase.	adenylate kinase 1;(source:Araport11)
AT5G63410.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G63580.1	protein_coding	flavonol synthase 2	encodes a protein whose sequence is similar to flavonol synthase	flavonol synthase 2;(source:Araport11)
AT5G63560.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G63570.1	protein_coding	glutamate-1-semialdehyde-2,1-aminomutase	Encodes a protein with homology to glutamate-1-semialdehyde 2,1-aminomutase catalyzing the conversion of glutamate-1-semialdehyde (GSA) into 5-amino levulinate. The expression of this gene was demonstrated to be light-induced. The mRNA is cell-to-cell mobile.	glutamate-1-semialdehyde-2,1-aminomutase;(source:Araport11)
AT5G24150.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein	squalene monooxygenase gene homolog	FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT5G36890.1	protein_coding	beta glucosidase 42		beta glucosidase 42;(source:Araport11)
AT5G36900.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G37000.1	protein_coding	Exostosin family protein		glycosyltransferase family exostosin protein;(source:Araport11)
AT5G37010.1	protein_coding			rho GTPase-activating protein;(source:Araport11)
AT5G44260.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein	Encodes a Tandem CCCH Zinc Finger protein. Interacts and co-localizes with MARD1 and RD21A in processing bodies (PBs) and stress granules (SGs).	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G44270.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family		TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT5G40930.1	protein_coding	translocase of outer membrane 20-4	Form of TOM20, which is a component of the TOM complex  involved in transport of nuclear-encoded mitochondrial proteins	translocase of outer membrane 20-4;(source:Araport11)
AT5G40940.1	protein_coding	putative fasciclin-like arabinogalactan protein 20	Fasciclin-like arabinogalactan protein. Possibly involved in embryogenesis and seed development.	putative fasciclin-like arabinogalactan protein 20;(source:Araport11)
AT5G40950.1	protein_coding	ribosomal protein large subunit 27		ribosomal protein large subunit 27;(source:Araport11)
AT5G40960.1	protein_coding	Protein of unknown function (DUF 3339)		transmembrane protein, putative (DUF 3339);(source:Araport11)
AT5G40970.1	protein_coding	Protein of unknown function (DUF 3339)		hypothetical protein (DUF 3339);(source:Araport11)
AT5G43180.1	protein_coding	Protein of unknown function, DUF599		transmembrane protein, putative (Protein of unknown function, DUF599);(source:Araport11)
AT5G62420.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT5G60030.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G65480.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G65490.1	protein_coding			suppressor-like protein;(source:Araport11)
AT5G53090.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G53100.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G53110.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G59120.1	protein_coding	subtilase 4.13	SBT4.13 subtilase. Activity is inhibited by SPI-1.	subtilase 4.13;(source:Araport11)
AT5G59110.1	protein_coding	subtilisin-like serine protease-related		subtilisin-like serine protease-like protein;(source:Araport11)
AT5G59350.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G59360.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G53670.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G53680.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G53700.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G53710.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G40500.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G40520.1	protein_coding			DNA double-strand break repair protein;(source:Araport11)
AT5G40760.1	protein_coding	glucose-6-phosphate dehydrogenase 6	Encodes a cytosolic glucose-6-phosphate dehydrogenase that is insensitive to reduction by DTT and whose mRNA is expressed ubiquitously. The mRNA is cell-to-cell mobile.	glucose-6-phosphate dehydrogenase 6;(source:Araport11)
AT5G40770.1	protein_coding	prohibitin 3	prohibitin 3	prohibitin 3;(source:Araport11)
AT5G40490.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	HLP1 is a member of the conserved hnRNP A/B family and contains RNA Recognition Motifs (RRM).It binds mRNA and appears to be involved in targeting alternative polyadenylation (APA). APA targets include genes involved in flowering. Loss of HLP1 function results causes late flowering under long and short day conditions. This phenotype is suppressed by loss of FLC.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G49630.1	protein_coding	amino acid permease 6	Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.	amino acid permease 6;(source:Araport11)
AT5G49640.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G47690.1	protein_coding	binding	One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	binding protein;(source:Araport11)
AT5G43190.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G43200.1	protein_coding	Zinc finger, C3HC4 type (RING finger) family protein		Zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT5G35430.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G35450.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G35570.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT5G05650.1	protein_coding			fasciclin-like arabinogalactan protein 17 precursor;(source:Araport11)
AT5G05620.1	protein_coding	gamma-tubulin  complex protein 2	Paralog of TUBG1, required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant. Enriched at the post-cytokinetic cell edges in leaves and roots.	gamma-tubulin complex protein 2;(source:Araport11)
AT5G05480.1	protein_coding	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein		Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein;(source:Araport11)
AT5G05490.1	protein_coding	Rad21/Rec8-like family protein	Encodes a RAD21-like gene essential for meiosis. Encodes a 627 a.a. protein that is slightly longer in the N-terminus than SYN1 BP5.	Rad21/Rec8-like family protein;(source:Araport11)
AT5G05500.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein	Encodes Proline-rich protein-like PRPL1, controls elongation of root hairs.	Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G05630.1	protein_coding	Amino acid permease family protein	Encodes POLYAMINE UPTAKE TRANSPORTER 3, an amino acid permease family protein.	Amino acid permease family protein;(source:Araport11)
AT5G05640.1	protein_coding	nucleoprotein-related		nucleoprotein-like protein;(source:Araport11)
AT5G24340.1	protein_coding	3'-5' exonuclease domain-containing protein		3-5 exonuclease domain-containing protein;(source:Araport11)
AT5G24210.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G37570.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT5G37560.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G65670.1	protein_coding	indole-3-acetic acid inducible 9	auxin (indole-3-acetic acid) induced gene The mRNA is cell-to-cell mobile.	indole-3-acetic acid inducible 9;(source:Araport11)
AT5G65810.1	protein_coding		Encodes CGR3 (cotton Golgi-related 3). CGR3 and a close homologue CGR2 have overlapping roles in pectin methylesterification and plant growth.	transmembrane protein;(source:Araport11)
AT5G65820.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G50000.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G50010.1	protein_coding	sequence-specific DNA binding transcription factors;transcription regulators		transcription factor bHLH145;(source:Araport11)
AT5G06680.1	protein_coding	spindle pole body component 98	Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes. Enriched at the post-cytokinetic cell edges in leaves and roots. The mRNA is cell-to-cell mobile.	spindle pole body component 98;(source:Araport11)
AT5G06850.1	protein_coding	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein	Encodes an endoplasmic reticulum protein that is involved in the transport of the florigen FT from companion cells to sieve elements, thus affecting FT transport through the phloem to the SAM.	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT5G56910.1	protein_coding	Proteinase inhibitor I25, cystatin, conserved region		Proteinase inhibitor I25, cystatin, conserved region;(source:Araport11)
AT5G56860.1	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the GATA factor family of zinc finger transcription factors. Modulate chlorophyll biosynthesis and glutamate synthase (GLU1/Fd-GOGAT) expression.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT5G56900.1	protein_coding	CwfJ-like family protein / zinc finger (CCCH-type) family protein		CwfJ-like family protein / zinc finger (CCCH-type) family protein;(source:Araport11)
AT5G17930.1	protein_coding	MIF4G domain-containing protein / MA3 domain-containing protein		MIF4G domain-containing protein / MA3 domain-containing protein;(source:Araport11)
AT5G17960.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein	Encodes a member of a Cys-rich protein family known as C1-clan proteins, that contains C1_2, C1_3 and ZZ/PHD type C1 domains. Its expression is responsive to phytohormones and is affected by biotic (chitin) and different abiotic (salinity, drought, cold and UV) treatments.	Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G17950.1	protein_coding			disease resistance protein;(source:Araport11)
AT5G36780.1	protein_coding		AT5G36780 and AT5G36690 represent identical copies. The duplication within clone F27C7 is believed an artifact with only one true copy existing.	proton pump-interactor;(source:Araport11)
AT5G41510.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G41520.1	protein_coding	RNA binding Plectin/S10 domain-containing protein	The gene belongs  to  the  three-member  Arabidopsis  gene  family  encoding  the  eukaryote-specific protein S10e of the small cytoplasmic ribosomal subunit.	RNA binding Plectin/S10 domain-containing protein;(source:Araport11)
AT5G41530.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G46430.1	protein_coding	Ribosomal protein L32e		Ribosomal protein L32e;(source:Araport11)
AT5G46440.1	protein_coding			PPR containing-like protein;(source:Araport11)
AT5G46230.1	protein_coding	Protein of unknown function, DUF538		hypothetical protein (Protein of unknown function, DUF538);(source:Araport11)
AT5G46240.1	protein_coding	potassium channel in Arabidopsis thaliana 1	Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis  both in epidermal cells as  well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized  within 0.5?0.6 &#956;m diameter microdomains at the  plasma membrane surface.  KAT1 belongs to the Shaker family K+ channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).	1;(source:Araport11)
AT5G46420.1	protein_coding	16S rRNA processing protein RimM family		16S rRNA processing protein RimM family;(source:Araport11)
AT5G40460.1	protein_coding			cyclin-dependent kinase inhibitor SMR3-like protein;(source:Araport11)
AT5G62960.1	protein_coding			UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein;(source:Araport11)
AT5G43870.1	protein_coding	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region	FORKED-LIKE family member, part of Group 1 (FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT5G47070.1	protein_coding	Protein kinase superfamily protein	Encodes a member of the RLCK VII-4 subfamily of  receptor-like cytoplasmic kinases that has been shown to phosphorylate MAPKKK5 Ser-599 and MEKK1 Ser-603, both players in PRR-mediated resistance to bacterial   and fungal pathogens.	Protein kinase superfamily protein;(source:Araport11)
AT5G47080.1	protein_coding	casein kinase II  beta chain 1	Regulatory subunit beta of casein kinase II (CK2). purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)). One known substrate of CK2 is Phytochrome Interacting Factor 1 (PIF1). CK2-mediated phosphorylation enhances the light-induced degradation of PIF1 to promote photomorphogenesis.	casein kinase II beta chain 1;(source:Araport11)
AT5G22590.1	protein_coding	Leucine Rich Repeat protein family		Leucine Rich Repeat protein family;(source:Araport11)
AT5G22600.1	protein_coding	FBD / Leucine Rich Repeat domains containing protein		FBD / Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G58420.1	protein_coding	Ribosomal protein S4 (RPS4A) family protein		Ribosomal protein S4 (RPS4A) family protein;(source:Araport11)
AT5G58430.1	protein_coding	exocyst subunit exo70 family protein B1	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein B1;(source:Araport11)
AT5G47450.1	protein_coding	tonoplast intrinsic protein 2;3	Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).	tonoplast intrinsic protein 2;(source:Araport11)
AT5G47440.1	protein_coding	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region	FORKED-LIKE family member, part of Group 3 (Group 1 consists of FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT5G47160.1	protein_coding	YDG/SRA domain-containing protein		YDG/SRA domain-containing protein;(source:Araport11)
AT5G47170.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G23510.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G65290.1	protein_coding	LMBR1-like membrane protein		LMBR1-like membrane protein;(source:Araport11)
AT5G65090.1	protein_coding	DNAse I-like superfamily protein	Encodes a protein involved in root hair morphogenesis and tip growth.  Required for restricting both the size of the root-hair initiation site and the width of the root hairs during the transition to tip growth, but, apparently, is not required for normal subsequent tip growth.	DNAse I-like superfamily protein;(source:Araport11)
AT5G65100.1	protein_coding	Ethylene insensitive 3 family protein		Ethylene insensitive 3 family protein;(source:Araport11)
AT5G65300.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G43670.1	protein_coding	Sec23/Sec24 protein transport family protein		Sec23/Sec24 protein transport family protein;(source:Araport11)
AT5G43690.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G43700.1	protein_coding	AUX/IAA transcriptional regulator family protein	Auxin inducible protein similar to transcription factors.	AUX/IAA transcriptional regulator family protein;(source:Araport11)
AT5G45820.1	protein_coding	CBL-interacting protein kinase 20	Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.	CBL-interacting protein kinase 20;(source:Araport11)
AT5G45830.1	protein_coding	delay of germination 1	Encodes DOG1 (DELAY OF GERMINATION 1).  A quantitative trait locus involved in the control of seed dormancy.  Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1.  DOG1 expression is seed-specific.	delay of germination 1;(source:Araport11)
AT5G45610.1	protein_coding	protein dimerizations	Encodes a homologue of the ATR-interacting protein ATRIP.  Mutant (named sensitive to UV2 or suv2) is UVB-hypersensitive and defective in DNA damage response.	protein dimerization;(source:Araport11)
AT5G45620.1	protein_coding	Proteasome component (PCI) domain protein		Proteasome component (PCI) domain protein;(source:Araport11)
AT5G45810.1	protein_coding	CBL-interacting protein kinase 19	Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.5), which has also been reported as a member of the CBL-interacting protein kinases (CIPK19).	CBL-interacting protein kinase 19;(source:Araport11)
AT5G54670.1	protein_coding	kinesin 3	Encodes a truncated KatC polypeptide (KatC(207-754)), which includes the carboxyl-terminal region of KatC. This was expressed in Escherichia coli and was shown to possess microtubule-stimulated ATPase activity.	kinesin 3;(source:Araport11)
AT5G54680.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G43020.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G43030.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G62610.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G62620.1	protein_coding	Galactosyltransferase family protein	Encodes a Golgi-localized hydroxyproline-O-galactosyltransferase.  Mutants display multiple phenotypes including reduced seed coat mucilage and accelerated leaf senescence.	Galactosyltransferase family protein;(source:Araport11)
AT5G62710.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G62720.1	protein_coding	Integral membrane HPP family protein		Integral membrane HPP family protein;(source:Araport11)
AT5G18070.1	protein_coding	phosphoglucosamine mutase-related	encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).	phosphoglucosamine mutase-like protein;(source:Araport11)
AT5G18080.1	protein_coding	SAUR-like auxin-responsive protein family 	Encodes SAUR24 (small auxin up RNA 24).  Note that TAIR nomenclature is based on Plant Mol Biol. 2002, 49:373-85 (PMID:12036261). In Planta (2011) 233:1223–1235 (PMID:21327815), SAUR24 is At5g18010.	SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G18300.1	protein_coding	NAC domain containing protein 88		NAC domain containing protein 88;(source:Araport11)
AT5G43920.1	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G44090.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT5G23740.1	protein_coding	ribosomal protein S11-beta	Encodes a putative ribosomal protein S11 (RPS11-beta).	ribosomal protein S11-beta;(source:Araport11)
AT5G23750.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT5G23730.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2 (RUP2).  Functions as a repressor of UV-B signaling.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G46880.1	protein_coding	homeobox-7		homeobox-7;(source:Araport11)
AT5G46890.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G46900.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G57360.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	Encodes clock-associated PAS protein ZTL; Also known as FKF1-like protein 2 or ADAGIO1(ADO1). A protein containing a PAS domain  ZTL contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. ZTL is the F-box component of an SCF complex implicated in the degradation of TOC1.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G51930.1	protein_coding	Glucose-methanol-choline (GMC) oxidoreductase family protein		Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT5G51940.1	protein_coding	RNA polymerase Rpb6	One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.	RNA polymerase Rpb6;(source:Araport11)
AT5G52130.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G52140.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G64180.1	protein_coding			tropomyosin;(source:Araport11)
AT5G64190.1	protein_coding			neuronal PAS domain protein;(source:Araport11)
AT5G64200.1	protein_coding	ortholog of human splicing factor SC35	encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks.	serine/arginine-rich splicing factor-like protein, putative;(source:Araport11)
AT5G37230.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G37200.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G37210.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G37220.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G61010.1	protein_coding	exocyst subunit exo70 family protein E2	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein E2;(source:Araport11)
AT5G61020.1	protein_coding	evolutionarily conserved C-terminal region 3		evolutionarily conserved C-terminal region 3;(source:Araport11)
AT5G60890.1	protein_coding	myb domain protein 34	Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.	myb domain protein 34;(source:Araport11)
AT5G66640.1	protein_coding	DA1-related protein 3		DA1-related protein 3;(source:Araport11)
AT5G66650.1	protein_coding	Protein of unknown function (DUF607)	Chloroplast localized mitochondrial calcium uniporter.	calcium uniporter (DUF607);(source:Araport11)
AT5G40310.1	protein_coding	Exonuclease family protein		Exonuclease family protein;(source:Araport11)
AT5G40300.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT5G55300.1	protein_coding	DNA topoisomerase I alpha	Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.	DNA topoisomerase I alpha;(source:Araport11)
AT5G61990.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G62180.1	protein_coding	carboxyesterase 20		carboxyesterase 20;(source:Araport11)
AT5G62190.1	protein_coding	DEAD box RNA helicase (PRH75)	DEAD/DEAH box RNA helicase PRH75	DEAD box RNA helicase (PRH75);(source:Araport11)
AT5G62200.1	protein_coding	Embryo-specific protein 3, (ATS3)		Embryo-specific protein 3, (ATS3);(source:Araport11)
AT5G62210.1	protein_coding	Embryo-specific protein 3, (ATS3)		Embryo-specific protein 3, (ATS3);(source:Araport11)
AT5G16680.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G16690.1	protein_coding	origin recognition complex subunit 3	Origin Recognition Complex subunit 3. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.	origin recognition complex subunit 3;(source:Araport11)
AT5G59610.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G59620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.1e-125 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G59800.1	protein_coding	methyl-CPG-binding domain 7	Encodes a protein containing a methyl-CpG-binding domain that acts as an anti-silencing factor that prevent gene repression and DNA hypermethylation by tethering other anti-silencing factors to methylated DNA, which enables the function of DNA demethylases that in turn limit DNA methylation and prevent transcriptional gene silencing.	methyl-CPG-binding domain 7;(source:Araport11)
AT5G59790.1	protein_coding	Domain of unknown function (DUF966)	SOK5 is a DUF966 domain containing protein expressed in early embryos.	UPSTREAM OF FLC protein (DUF966);(source:Araport11)
AT5G57780.1	protein_coding		Encodes a atypical member of the bHLH (basic helix-loop-helix) family transcriptional factors.	transcription factor;(source:Araport11)
AT5G58010.1	protein_coding	LJRHL1-like 3	Encodes a basic helix-loop-helix (bHLH) protein that regulates root hair development.  One of the three Arabidopsis homologs of the Lotus japonicus ROOTHAIRLESS1 (LjRHL1) gene: At2g24260 (AtLRL1), At4g30980 (AtLRL2), and At5g58010 (AtLRL3).	LJRHL1-like 3;(source:Araport11)
AT5G57660.1	protein_coding	CONSTANS-like 5		CONSTANS-like 5;(source:Araport11)
AT5G57420.1	protein_coding	indole-3-acetic acid inducible 33	Belongs to auxin inducible gene family.	indole-3-acetic acid inducible 33;(source:Araport11)
AT5G57440.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	a member of haloacid dehalogenase-like hydrolase family	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G57450.1	protein_coding	homolog of X-ray repair cross complementing 3 (XRCC3)	Involved in homologous recombination and recombinational repair, mutants are sterile, hypersensitive to DNA crosslinking agents, show aberrant meiosis with extensive chromosome fragmentation	homolog of X-ray repair cross complementing 3 (XRCC3);(source:Araport11)
AT5G57460.1	protein_coding		TPLATE complex subunit involved in clathirin mediated endocytosis.	muniscin carboxy-terminal mu-like domain protein;(source:Araport11)
AT5G14030.1	protein_coding	translocon-associated protein beta (TRAPB) family protein		translocon-associated protein beta (TRAPB) family protein;(source:Araport11)
AT5G14040.1	protein_coding	phosphate transporter 3;1	Encodes a mitochondrial phosphate transporter. Modulates plant responses to salt stress.	phosphate transporter 3;(source:Araport11)
AT5G14220.1	protein_coding	Flavin containing amine oxidoreductase family	Encodes PPO2, a putative protoporphyrinogen oxidase based on sequence homology.  Also known as MEE61 (maternal effect embryo arrest 61).  mee61 mutant shows arrested endosperm development.	Flavin containing amine oxidoreductase family;(source:Araport11)
AT5G40120.1	protein_coding	AGAMOUS-like 76		AGAMOUS-like 76;(source:Araport11)
AT5G40130.1	pseudogene			pseudogene of ribosomal protein L5 B;(source:Araport11)
AT5G40110.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03950.1);(source:TAIR10)
AT5G66770.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT5G66780.1	protein_coding			late embryogenesis abundant protein;(source:Araport11)
AT5G66790.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G66940.1	protein_coding	Dof-type zinc finger DNA-binding family protein	Encodes a nuclear localized DOF-domain binding transcription factor.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT5G66950.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT5G41730.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT5G41740.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G60360.1	protein_coding	aleurain-like protease	Encodes a senescence-associated thiol protease. The mRNA is cell-to-cell mobile.	aleurain-like protease;(source:Araport11)
AT5G60370.1	protein_coding			exonuclease V-like protein;(source:Araport11)
AT5G60380.1	protein_coding	Protein of Unknown Function (DUF239)		transmembrane protein, putative (DUF239);(source:Araport11)
AT5G04900.1	protein_coding	NYC1-like	Encodes a chlorophyll b reducatase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II).	NYC1-like protein;(source:Araport11)
AT5G04910.1	protein_coding			DNA repair REX1-B protein;(source:Araport11)
AT5G04920.1	protein_coding	EAP30/Vps36 family protein		EAP30/Vps36 family protein;(source:Araport11)
AT5G05150.1	protein_coding	autophagy-related gene 18E		autophagy-related protein 18E;(source:Araport11)
AT5G05140.1	protein_coding	Transcription elongation factor (TFIIS) family protein		Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT5G57070.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G57080.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G57200.1	protein_coding	ENTH/ANTH/VHS superfamily protein		ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT5G57210.1	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT5G39340.1	protein_coding	histidine-containing phosphotransmitter 3	Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	histidine-containing phosphotransmitter 3;(source:Araport11)
AT5G39350.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G39360.1	protein_coding	EID1-like 2		EID1-like 2;(source:Araport11)
AT5G39540.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G39330.1	protein_coding	Protein of unknown function (DUF1163)		transmembrane protein, putative (DUF1163);(source:Araport11)
AT5G60590.1	protein_coding	DHBP synthase RibB-like alpha/beta domain		DHBP synthase RibB-like alpha/beta domain-containing protein;(source:Araport11)
AT5G60760.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G60600.1	protein_coding	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	Encodes a chloroplast-localized  hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP).  The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP<sup>+</sup> reductase. The mRNA is cell-to-cell mobile.	4-hydroxy-3-methylbut-2-enyl diphosphate synthase;(source:Araport11)
AT5G60610.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G17860.1	protein_coding	calcium exchanger 7		calcium exchanger 7;(source:Araport11)
AT5G17870.1	protein_coding	plastid-specific 50S ribosomal protein 6	plastid-specific ribosomal protein 6 precursor (Psrp-6) - like	plastid-specific 50S ribosomal protein 6;(source:Araport11)
AT5G64700.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G64710.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT5G64720.1	protein_coding	Protein of unknown function (DUF1278)	Encodes a small cysteine-rich protein that is secreted by the egg cell during gamete interactions. The regulated secretion of EC1 by the egg cell upon sperm-egg interaction is proposed to ensure the appropriate localization of the cell-fusion machinery in distinct sperm membrane domains to accomplish gamete fusion.	Egg cell-secreted-like protein (DUF1278);(source:Araport11)
AT5G55560.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G55570.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G55580.1	protein_coding	Mitochondrial transcription termination factor family protein	Encodes a mitochondrial transcription termination factor (mTERF) family protein. The gene product is targeted to the chloroplast and mutants are affected in chloroplast development. Mutants, named as twirt1 (twr-1), display altered root meristem function resulting in short roots.  Mutation also affects shoot meristem function.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT5G51080.1	protein_coding	RNase H family protein		RNase H family protein;(source:Araport11)
AT5G51090.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G51100.1	protein_coding	Fe superoxide dismutase 2	Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.	Fe superoxide dismutase 2;(source:Araport11)
AT5G51330.1	protein_coding	SWITCH1	Encodes novel protein involved in sister chromatid cohesion and meiotic chromosome organization during both male and female meiosis.  Gene has two alternate transcripts which produce two similar proteins, one 57 aa shorter than the other.	SWITCH1;(source:Araport11)
AT5G51320.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42556.1);(source:TAIR10)
AT5G22470.1	protein_coding	NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases	PARP3 is one of three canonical PARPs in Arabidopsis.	poly ADP-ribose polymerase 3;(source:Araport11)
AT5G43320.1	protein_coding	casein kinase I-like 8	Member of CKL gene family (CKL-C group)	casein kinase I-like 8;(source:Araport11)
AT5G43330.1	protein_coding	Lactate/malate dehydrogenase family protein	predicted to encode a cytosolic malate dehydrogenase. The mRNA is cell-to-cell mobile.	Lactate/malate dehydrogenase family protein;(source:Araport11)
AT5G55840.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		PPR superfamily protein;(source:Araport11)
AT5G55850.1	protein_coding	RPM1-interacting protein 4 (RIN4) family protein	NOI protein	RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT5G35780.1	pseudogene			pseudogene of B3 domain protein (DUF313);(source:Araport11)
AT5G35790.1	protein_coding	glucose-6-phosphate dehydrogenase 1	Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is more prevalent in developing organs but absent in the root.	glucose-6-phosphate dehydrogenase 1;(source:Araport11)
AT5G38120.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT5G38130.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G38140.1	protein_coding	nuclear factor Y, subunit C12		nuclear factor Y, subunit C12;(source:Araport11)
AT5G38290.1	protein_coding	Peptidyl-tRNA hydrolase family protein		Peptidyl-tRNA hydrolase family protein;(source:Araport11)
AT5G38300.1	protein_coding			homeobox Hox-B3-like protein;(source:Araport11)
AT5G24660.1	protein_coding	response to low sulfur 2		response to low sulfur 2;(source:Araport11)
AT5G52960.1	protein_coding			tRNA dimethylallyltransferase;(source:Araport11)
AT5G52970.1	protein_coding	thylakoid lumen 15.0 kDa protein		thylakoid lumen 15.0 kDa protein;(source:Araport11)
AT5G52980.1	protein_coding			ER-based factor for assembly of V-ATPase;(source:Araport11)
AT5G52800.1	protein_coding	DNA primases	primase/polymerase protein	DNA primase;(source:Araport11)
AT5G52810.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	SAR-DEFICIENT4 (SARD4) alias ORNITHINE CYCLODEAMINASE/m-CRYSTALLIN (ORNCD1) is involved in the biosynthesis of pipecolic acid. The reductase converts dehydropipecolic acid intermediates generated from L-Lysine by AGD2-LIKE DEFENSE RESPONSE PROTEIN1 (ALD1) to pipecolic acid (PMID:28330936).	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G52990.1	protein_coding	SNARE-like superfamily protein		SNARE-like superfamily protein;(source:Araport11)
AT5G52820.1	protein_coding	WD-40 repeat family protein / notchless protein, putative	Encodes a NOTCHLESS homolog, a non-ribosomal protein involved in the maturation and assembly of the 60S ribosomal subunit, that is required for female gametogenesis. The mRNA is cell-to-cell mobile.	WD-40 repeat family protein / notchless protein;(source:Araport11)
AT5G12060.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G12070.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G12080.1	protein_coding	mechanosensitive channel of small conductance-like 10	Encodes a mechanosensitive (or stretch-activated) ion channel in the plasma membrane with a moderate preference for anions.Cell death activity is negatively regulated by phosphorylation while mechanosensitive properties are unaffected.	mechanosensitive channel of small conductance-like 10;(source:Araport11)
AT5G13810.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT5G13750.1	protein_coding	zinc induced facilitator-like 1		zinc induced facilitator-like 1;(source:Araport11)
AT5G13760.1	protein_coding	Plasma-membrane choline transporter family protein		Plasma-membrane choline transporter family protein;(source:Araport11)
AT5G13800.1	protein_coding	pheophytinase	Encodes a pheophytinase that is involved in chlorophyll breakdown. Its transcript levels increase during senescence and pph-1 mutants have a stay-green phenotype.	pheophytinase;(source:Araport11)
AT5G39000.1	protein_coding	Malectin/receptor-like protein kinase family protein	Involved in growth adaptation upon exposure to metal ions. Contributes together with the other MDS genes to the complex network of CrRLK1Ls that positively and negatively affect growth.	Malectin/receptor-like protein kinase family protein;(source:Araport11)
AT5G39010.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G39160.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G39170.1	protein_coding			myb-like protein Q;(source:Araport11)
AT5G39180.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G35670.1	protein_coding	IQ-domain 33	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 33;(source:Araport11)
AT5G35680.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT5G38490.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein (DUF313);(source:Araport11)
AT5G38500.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein (DUF313);(source:Araport11)
AT5G38350.1	protein_coding	Disease resistance protein (NBS-LRR class) family		Disease resistance protein (NBS-LRR class) family;(source:Araport11)
AT5G38360.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G38510.1	protein_coding	Rhomboid-related intramembrane serine protease family protein		Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT5G50480.1	protein_coding	nuclear factor Y, subunit C6		nuclear factor Y, subunit C6;(source:Araport11)
AT5G50310.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G56270.1	protein_coding	WRKY DNA-binding protein 2	Encodes WRKY transcription factor 2, a zinc-finger protein.  In wrky2 mutants, egg cells polarize normally but zygotes fail to reestablish polar organelle positioning from a transient symmetric state, resulting in equal cell division and distorted embryo development.	WRKY DNA-binding protein 2;(source:Araport11)
AT5G56280.1	protein_coding	COP9 signalosome subunit 6A	one of two genes encoding subunit 6 of COP9 signalosome complex. Protein contains a MPR1p and PAD1p N-terminal (MPN) domain at the N-terminal region and belongs to the Mov34 superfamily. Mutant and antisense expression result in a number of developmental defects and in ubiquitin/proteasome-mediated protein degradation.	COP9 signalosome subunit 6A;(source:Araport11)
AT5G64790.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G64800.1	protein_coding	CLAVATA3/ESR-RELATED 21	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 21;(source:Araport11)
AT5G65060.1	protein_coding	K-box region and MADS-box transcription factor family protein 	MADS domain protein - flowering regulator that is closely related to FLC	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G07780.1	protein_coding	Actin-binding FH2 (formin homology 2) family protein	Encodes a class II formin that nucleates actin assembly, binds to the barbed-end of actin filaments and antagonizes the effect of FH1 on actin dynamics. The mRNA is cell-to-cell mobile.	Actin-binding FH2 (formin homology 2) family protein;(source:Araport11)
AT5G07790.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G07970.1	protein_coding	dentin sialophosphoprotein-related		dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G07980.1	protein_coding	dentin sialophosphoprotein-related		dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G07900.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT5G07870.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G07820.1	protein_coding	Plant calmodulin-binding protein-related		Plant calmodulin-binding protein-like protein;(source:Araport11)
AT5G07950.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G07830.1	protein_coding	glucuronidase 2	Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-&#946;-GlcNAc attachment sites and serine-, threonine- and  tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted  (WoLF PSORT program) to be membrane-associated.  It is involved in cell elongation. The mRNA is cell-to-cell mobile.	glucuronidase 2;(source:Araport11)
AT5G07960.1	protein_coding			asterix-like protein;(source:Araport11)
AT5G07910.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G07880.1	protein_coding	synaptosomal-associated protein SNAP25-like 29	member of mammalian SNAP25 Gene Family, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.	synaptosomal-associated protein SNAP25-like 29;(source:Araport11)
AT5G07840.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G07940.1	protein_coding			dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G07890.1	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT5G07920.1	protein_coding	diacylglycerol kinase1	Encodes a putative diacylglycerol kinase that is mainly expressed in roots, shoots and leaves, but its enzyme product was not active in vitro.	diacylglycerol kinase1;(source:Araport11)
AT5G07850.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G07930.1	protein_coding	MEI2 C-terminal RRM only like 2	A member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.	MEI2 C-terminal RRM only like 2;(source:Araport11)
AT5G07860.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G40040.1	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT5G40050.1	protein_coding	F-box/FBD-like domains containing protein		F-box/FBD-like domains containing protein;(source:Araport11)
AT5G40030.1	protein_coding	Protein kinase superfamily protein	Member of AGC VIIIa Kinase gene family.	Protein kinase superfamily protein;(source:Araport11)
AT5G39850.1	protein_coding	Ribosomal protein S4		Ribosomal protein S4;(source:Araport11)
AT5G23160.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G55900.1	protein_coding	Sucrase/ferredoxin-like family protein		Sucrase/ferredoxin-like family protein;(source:Araport11)
AT5G55910.1	protein_coding	D6 protein kinase	Member of AGC VIIIa Kinase family. D6PK is a protein kinase involved that plays a role in polar auxin transport. Most likely acts redundantly with the related proteins: D6PKL1,D6PKL2,and D6PKL3. PIN1 is a target of D6PK phosphorylation. D6PK is associated with sterol enriched membrane rafts and may be involved in regulation of the switch from basal to planar polarity during root hair initiation. Involved in pulse-induced phototropism but also for time-dependent second positive phototropism. Works with PIN3 in the same genetic pathway of hypocotyl phototropism under all light conditions. Involved in the generation of auxin asymmetrical distribution induced by phototropic stimulation.	D6 protein kinase;(source:Araport11)
AT5G55970.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G55980.1	protein_coding	serine-rich protein-related		serine-rich protein-like protein;(source:Araport11)
AT5G53480.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G53400.1	protein_coding	HSP20-like chaperones superfamily protein	Encodes BOBBER1 (BOB1), a non-canonical small heat shock protein required for both development and thermotolerance. BOB1 is cytoplasmic at basal temperatures but forms heat shock granules containing canonical small heat shock proteins at high temperatures. The mRNA is cell-to-cell mobile.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT5G53410.1	protein_coding			F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G46630.1	protein_coding	Clathrin adaptor complexes medium subunit family protein	clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexes	Clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT5G46640.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT5G46830.1	protein_coding	NACL-inducible gene 1	Calcium-binding transcription factor involved in salt stress signaling.	calcium-binding transcription factor NIG1;(source:Araport11)
AT5G46840.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G24120.1	protein_coding	sigma factor E	Encodes a specialized sigma factor that functions in regulation of plastid genes  and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.	sigma factor E;(source:Araport11)
AT5G24110.1	protein_coding	WRKY DNA-binding protein 30	member of WRKY Transcription Factor; Group III	WRKY DNA-binding protein 30;(source:Araport11)
AT5G58560.1	protein_coding	Phosphatidate cytidylyltransferase family protein	FOLK is a farnesol kinase that can phosphorylate farnesol using an NTP donor. It can also phosphorylate geraniol, or geranylgeraniol, but it prefers farnesol in experiments performed using yeast membranes. folk loss-of-function mutants show ABA hypersensitivity in a seed germination assay and the mutants also exhibit abnormal flower development, including extra carpel formation, when subjected to water stress. The mRNA is cell-to-cell mobile.	Phosphatidate cytidylyltransferase family protein;(source:Araport11)
AT5G58570.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G58550.1	protein_coding	ETO1-like 2	Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL2 also interacts with and inhibits the activity of ACS5.	ETO1-like 2;(source:Araport11)
AT5G58810.1	pseudogene			pseudogene of Subtilase family protein;(source:Araport11)
AT5G58820.1	protein_coding	Subtilisin-like serine endopeptidase family protein		Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT5G17380.1	protein_coding	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein		Thiamine pyrophosphate dependent pyruvate decarboxylase family protein;(source:Araport11)
AT5G17360.1	protein_coding			DNA ligase;(source:Araport11)
AT5G17370.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G17350.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G20990.1	protein_coding	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1)	Involved in molybdenum cofactor (Moco) biosynthesis, inserting Mo into Molybdopterin. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1);(source:Araport11)
AT5G21010.1	protein_coding	BTB-POZ and MATH domain 5	Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 5;(source:Araport11)
AT5G21030.1	protein_coding	PAZ domain-containing protein / piwi domain-containing protein		PAZ domain-containing protein / piwi domain-containing protein;(source:Araport11)
AT5G21040.1	protein_coding	F-box protein 2	Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses. Its expression is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.	F-box protein 2;(source:Araport11)
AT5G21050.1	protein_coding			hyccin;(source:Araport11)
AT5G01300.1	protein_coding	PEBP (phosphatidylethanolamine-binding protein) family protein		PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11)
AT5G01280.1	protein_coding		Encodes a microtubule-associated protein.	GPI-anchored protein;(source:Araport11)
AT5G01290.1	protein_coding	mRNA capping enzyme family protein		mRNA capping enzyme family protein;(source:Araport11)
AT5G01480.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G24990.1	protein_coding	Protein of unknown function (DUF1336)		enhanced disease resistance-like protein (DUF1336);(source:Araport11)
AT5G25130.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 12	putative cytochrome P450 The mRNA is cell-to-cell mobile.	cytochrome P450, family 71, subfamily B, polypeptide 12;(source:Araport11)
AT5G25140.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 13	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 13;(source:Araport11)
AT5G25150.1	protein_coding	TBP-associated factor 5	Encodes a putative TATA-binding-protein associated factor TAF5.  TAFs are subunits of the general transcription factor IID (TFIID).	TBP-associated factor 5;(source:Araport11)
AT5G24960.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 14	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 14;(source:Araport11)
AT5G24970.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G24980.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G64510.1	protein_coding		Encodes Tunicamycin Induced 1(TIN1), a plant-specic ER stress-inducible protein. TIN1 mutation affects pollen surface morphology. Transcriptionally induced by treatment with the N-linked glyclsylation inhibitor tunicamycin.	tunicamycin induced protein;(source:Araport11)
AT5G64430.1	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT5G64520.1	protein_coding	homolog of X-ray repair cross complementing 2 (XRCC2)	Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.	homolog of X-ray repair cross complementing 2 (XRCC2);(source:Araport11)
AT5G25440.1	protein_coding	Protein kinase superfamily protein	Receptor like kinase involved in HopZ1a effector triggered immunity. Interacts with ZAR1. Localization to membrane is dependent on N-terminal myristoylation domain.	Protein kinase superfamily protein;(source:Araport11)
AT5G25450.1	protein_coding	Cytochrome bd ubiquinol oxidase, 14kDa subunit		Cytochrome bd ubiquinol oxidase, 14kDa subunit;(source:Araport11)
AT5G25460.1	protein_coding	Protein of unknown function, DUF642	Encodes a DUF642 cell wall protein.	transmembrane protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT5G25430.1	protein_coding	HCO3- transporter family		HCO3- transporter family;(source:Araport11)
AT5G14510.1	protein_coding	ARM repeat superfamily protein	Armadillo (ARM) repeat containing protein involved in vascular development.	ARM repeat superfamily protein;(source:Araport11)
AT5G14480.1	protein_coding	beta-1,4-N-acetylglucosaminyltransferase family protein		beta-1,4-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G14490.1	protein_coding	NAC domain containing protein 85		NAC domain containing protein 85;(source:Araport11)
AT5G14500.1	protein_coding	aldose 1-epimerase family protein		aldose 1-epimerase family protein;(source:Araport11)
AT5G18970.1	protein_coding	AWPM-19-like family protein		AWPM-19-like family protein;(source:Araport11)
AT5G26280.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT5G26210.1	protein_coding	alfin-like 4	Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 4;(source:Araport11)
AT5G26220.1	protein_coding	ChaC-like family protein		ChaC-like family protein;(source:Araport11)
AT5G26230.1	protein_coding		Encodes a member of the MAKR (MEMBRANE-ASSOCIATED KINASE REGULATOR)  gene family. MAKRs have putative kinase interacting motifs and membrane localization signals. Known members include: AT5G26230 (MAKR1), AT1G64080 (MAKR2), AT2G37380 (MAKR3), AT2G39370 (MAKR4), AT5G52870 (MAKR5) and AT5G52900 (MAKR6).	membrane-associated kinase regulator;(source:Araport11)
AT5G26240.1	protein_coding	chloride channel D	Anion channel protein family member. Involved in negative regulation of pattern triggered immunity.	chloride channel D;(source:Araport11)
AT5G26250.1	protein_coding	Major facilitator superfamily protein	Sugar transporter expressed strongly in pollen and pollen tubes.	Major facilitator superfamily protein;(source:Araport11)
AT5G26260.1	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT5G26270.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G04250.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT5G04260.1	protein_coding	WCRKC thioredoxin 2	Encodes a thioredoxin (WCRKC2) localized in chloroplast stroma.  Contains a WCRKC motif. Functions in redox cascade with 2CPA and 2CPB via the ferredoxin-thioredoxin reductase (FTR)/thioredoxin (Trx) pathway to mediate the light-responsive reductive control of target proteins. Oxidizes redox-regulated proteins.	WCRKC thioredoxin 2;(source:Araport11)
AT5G04270.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT5G18730.1	protein_coding			DNAJ heat shock amino-terminal domain protein;(source:Araport11)
AT5G18740.1	protein_coding	Domain of unknown function (DUF3444)		hypothetical protein (DUF3444);(source:Araport11)
AT5G18750.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G18760.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G04740.1	protein_coding	ACT domain-containing protein	Encodes a ACT domain-containing protein.  The ACT domain, named after bacterial aspartate kinase, chorismate mutase and TyrA (prephenate dehydrogenase), is a regulatory domain that serves as an amino acid-binding site in feedback-regulated amino acid metabolic enzymes.	ACT domain-containing protein;(source:Araport11)
AT5G04750.1	protein_coding	F1F0-ATPase inhibitor protein, putative		F1F0-ATPase inhibitor protein;(source:Araport11)
AT5G04760.1	protein_coding	Duplicated homeodomain-like superfamily protein	R-R-type MYB protein which plays negative roles in salt stress and is required for ABA signaling in Arabidopsis.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT5G04770.1	protein_coding	cationic amino acid transporter 6	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.	cationic amino acid transporter 6;(source:Araport11)
AT5G04700.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G04780.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G04710.1	protein_coding	Zn-dependent exopeptidases superfamily protein	Plastid localized  metalloaminopeptidase.	Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT5G04720.1	protein_coding	ADR1-like 2	Encodes a member of the ADR1 family nucleotide-binding leucine-rich repeat (NB-LRR) immune receptors. The mRNA is cell-to-cell mobile.	ADR1-like 2;(source:Araport11)
AT5G04800.1	protein_coding	Ribosomal S17 family protein		Ribosomal S17 family protein;(source:Araport11)
AT5G04730.1	protein_coding	Ankyrin-repeat containing protein		Ankyrin-repeat containing protein;(source:Araport11)
AT5G04810.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein	Pentatricopeptide which is essential during the early stages of embryo development and acts in the plastid nucleoids as the factor responsible of rps12 intron 1 trans-splicing and, indirectly, in the assembly of 70S ribosomes and plastid translation.	pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT5G04790.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G27660.1	protein_coding	Trypsin family protein with PDZ domain	Encodes a protein with similarity to human PARK13, a mitochondrial protease implicated in Parkinson disease. DEG14  is induced by heat stress and involved in degradation of misfolded proteins.	Trypsin family protein with PDZ domain-containing protein;(source:Araport11)
AT5G27670.1	protein_coding	histone H2A 7	Encodes HTA7, a histone H2A protein.	histone H2A 7;(source:Araport11)
AT5G27640.1	protein_coding	translation initiation factor 3B1	encodes a member of eukaryotic translation initiation factor 3B family.	translation initiation factor 3B1;(source:Araport11)
AT5G27650.1	protein_coding	Tudor/PWWP/MBT superfamily protein	PWWP domain protein involved in regulation of FLC and flowering time.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT5G25870.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G25880.1	protein_coding	NADP-malic enzyme 3	The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals.	NADP-malic enzyme 3;(source:Araport11)
AT5G25890.1	protein_coding	indole-3-acetic acid inducible 28	encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.	indole-3-acetic acid inducible 28;(source:Araport11)
AT5G25900.1	protein_coding	GA requiring 3	Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway.	GA requiring 3;(source:Araport11)
AT5G25910.1	protein_coding	receptor like protein 52	putative disease resistance protein induced by chitin oligomers.	receptor like protein 52;(source:Araport11)
AT5G25920.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G25930.1	protein_coding	Protein kinase family protein with leucine-rich repeat domain		kinase family with leucine-rich repeat domain-containing protein;(source:Araport11)
AT5G25940.1	protein_coding	early nodulin-related		early nodulin-like protein;(source:Araport11)
AT5G25950.1	protein_coding	Protein of Unknown Function (DUF239)		AslB, putative (DUF239);(source:Araport11)
AT5G15390.1	protein_coding	tRNA/rRNA methyltransferase (SpoU) family protein		tRNA/rRNA methyltransferase (SpoU) family protein;(source:Araport11)
AT5G23000.1	protein_coding	myb domain protein 37	Putative homolog of the Blind gene in tomato. Together with RAX2 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB37, regulates axillary meristem formation.  RAX1 is expressed in a small central domain within the boundary zone separating SAM and leaf primordia during early leaf primordium development and is currently the earliest spatial marker for future axillary meristems. Member of the R2R3 factor gene family.	myb domain protein 37;(source:Araport11)
AT5G27290.1	protein_coding			stress regulated protein;(source:Araport11)
AT5G27250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);transposase IS4 family protein,  contains Pfam profile: PF01609 transposase DDE domain;(source:TAIR10)
AT5G27260.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT5G27270.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G27280.1	protein_coding	Zim17-type zinc finger protein		Zim17-type zinc finger protein;(source:Araport11)
AT5G08260.1	protein_coding	serine carboxypeptidase-like 35		serine carboxypeptidase-like 35;(source:Araport11)
AT5G08270.1	protein_coding			C5orf35;(source:Araport11)
AT5G08190.1	protein_coding	nuclear factor Y, subunit B12		nuclear factor Y, subunit B12;(source:Araport11)
AT5G08030.1	protein_coding	PLC-like phosphodiesterases superfamily protein	Encodes a member of the glycerophosphodiester phosphodiesterase (GDPD) family.	PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT5G08200.1	protein_coding	peptidoglycan-binding LysM domain-containing protein		peptidoglycan-binding LysM domain-containing protein;(source:Araport11)
AT5G08040.1	protein_coding	mitochondrial import receptor subunit TOM5 homolog		mitochondrial import receptor subunit TOM5-like protein;(source:Araport11)
AT5G08210.1	miRNA_primary_transcript	MIR834a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGGUAGCAGUAGCGGUGGUAA	microRNA ath-MIR834 precursor;(source:Araport11)
AT5G08050.1	protein_coding	Protein of unknown function (DUF1118)	Encodes a grana core localized protein. Mutant plants have reduced NPQ, affected organization of light-havesting complex II and an enhanced grana stacking.	wiskott-aldrich syndrome family protein, putative (DUF1118);(source:Araport11)
AT5G08060.1	protein_coding			furry;(source:Araport11)
AT5G08230.1	protein_coding	Tudor/PWWP/MBT domain-containing protein	HUA and HUA-LIKE (HULK) genes act redundantly to regulate a subset of essential genes, with some (or all) family members also having specific functions.	tudor/PWWP/MBT domain protein;(source:Araport11)
AT5G08240.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G08250.1	protein_coding	Cytochrome P450 superfamily protein		Cytochrome P450 superfamily protein;(source:Araport11)
AT5G02680.1	protein_coding			methionine-tRNA ligase;(source:Araport11)
AT5G02690.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G02720.1	protein_coding			valine-tRNA ligase;(source:Araport11)
AT5G02420.1	protein_coding			cyclin-dependent kinase inhibitor SMR3-like protein;(source:Araport11)
AT5G02430.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G02440.1	protein_coding			60S ribosomal protein L36;(source:Araport11)
AT5G02450.1	protein_coding	Ribosomal protein L36e family protein		Ribosomal protein L36e family protein;(source:Araport11)
AT5G02460.1	protein_coding	Dof-type zinc finger DNA-binding family protein	PEAR protein involved in the formation of a short-range concentration gradient that peaks at protophloem sieve elements, and activates gene expression that promotes radial growth. Locally promotes transcription of inhibitory HD-ZIP III genes, and thereby establishes a negative-feedback loop that forms a robust boundary that demarks the zone of cell division.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT5G02700.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G02470.1	protein_coding	Transcription factor DP	core cell cycle genes	Transcription factor DP;(source:Araport11)
AT5G02710.1	protein_coding			zinc/iron-chelating domain protein;(source:Araport11)
AT5G11590.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G11600.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G11810.1	protein_coding			rhomboid family protein;(source:Araport11)
AT5G11820.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G11830.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G11610.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT5G28190.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G28170.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35110.1);(source:TAIR10)
AT5G28180.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G19260.1	protein_coding	Protein of unknown function (DUF3049)	A member of the FAF family proteins encoded by the FANTASTIC FOUR (FAF) genes:   AT4G02810 (FAF1), AT1G03170 (FAF2), AT5G19260 (FAF3) and AT3G06020 (FAF4).  FAFs have the potential to regulate shoot meristem size in Arabidopsis thaliana. FAFs can repress WUS, which ultimately leads to an arrest of meristem activity in FAF overexpressing lines.	FANTASTIC four-like protein (DUF3049);(source:Araport11)
AT5G19280.1	protein_coding	kinase associated protein phosphatase	kinase associated protein phosphatase composed of three domains: an amino-terminal signal anchor, a kinase interaction (KI) domain, and a type 2C protein phosphatase catalytic region	kinase associated protein phosphatase;(source:Araport11)
AT5G19110.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G13030.1	protein_coding		Chloroplast localized homolog of SELO. Loss of function mutants have reduced production of reactive oxygen species (ROS) and higher ROS scavenging.	selenoprotein O;(source:Araport11)
AT5G13020.1	protein_coding	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein		Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein;(source:Araport11)
AT5G07070.1	protein_coding	CBL-interacting protein kinase 2	Encodes CBL-interacting protein kinase 2 (CIPK2).	CBL-interacting protein kinase 2;(source:Araport11)
AT5G07080.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G07100.1	protein_coding	WRKY DNA-binding protein 26	Encodes WRKY DNA-binding protein 26 (WRKY26).	WRKY DNA-binding protein 26;(source:Araport11)
AT5G07110.1	protein_coding	prenylated RAB acceptor 1.B6	Encodes PRA1.B6, an isoform of the PRA1 (Prenylated Rab acceptors) family.  PRAs bind to prenylated Rab proteins and possibly aids in targeting Rabs to their respective compartments. PRA1.B6 localizes to the Golgi apparatus and its ER-to-Golgi trafficking and localization to the Golgi apparatus are regulated by multiple sequence motifs in both the C- and N-terminal cytoplasmic domains.	prenylated RAB acceptor 1.B6;(source:Araport11)
AT5G07090.1	protein_coding	Ribosomal protein S4 (RPS4A) family protein		Ribosomal protein S4 (RPS4A) family protein;(source:Araport11)
AT5G18620.1	protein_coding	chromatin remodeling factor17	Encodes a member of the A. thaliana imitation switch (AtISWI) subfamily of chromatin remodeling factors. Double mutation in CHR17 and CHR11 results in the loss of the evenly spaced nucleosome pattern in gene bodies, but does not affect nucleosome density.	chromatin remodeling factor17;(source:Araport11)
AT5G18480.1	protein_coding	plant glycogenin-like starch initiation protein 6	Encodes an IPC (inositol phosphorylceramide) glucuronosyltransferase.  Defects in transmission via the pollen are evident but the defect in transmission through the male gametophyte  is not due to improper pollen development or inability of pollen tubes to germinate and grow. Using a pollen specific complementation strategy to obtain homozygotes, loss of function results in constitutive hypersensitive response and severe growth defects.	plant glycogenin-like starch initiation protein 6;(source:Araport11)
AT5G18490.1	protein_coding	Plant protein of unknown function (DUF946)		vacuolar sorting-associated protein (DUF946);(source:Araport11)
AT5G18500.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G18510.1	protein_coding	Aminotransferase-like, plant mobile domain family protein		Aminotransferase-like, plant mobile domain family protein;(source:Araport11)
AT5G18520.1	protein_coding	Lung seven transmembrane receptor family protein	Encodes a candidate G-protein Coupled Receptor that is involved in the regulation of root growth by bacterial N-acyl-homoserine lactones (AHLs) and plays a role in mediating interactions between plants and microbes. The mRNA is cell-to-cell mobile.	Lung seven transmembrane receptor family protein;(source:Araport11)
AT5G18590.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G18470.1	protein_coding	Curculin-like (mannose-binding) lectin family protein		Curculin-like (mannose-binding) lectin family protein;(source:Araport11)
AT5G18600.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2 and suppress ORA59 promoter activity.	Thioredoxin superfamily protein;(source:Araport11)
AT5G18610.1	protein_coding	Protein kinase superfamily protein	Encodes a receptor-like cytoplasmic kinase that is an immediate downstream component of the chitin receptor CERK1 and contributes to the regulation of chitin-induced immunity.	Protein kinase superfamily protein;(source:Araport11)
AT5G33280.1	protein_coding	Voltage-gated chloride channel family protein		Voltage-gated chloride channel family protein;(source:Araport11)
AT5G33290.1	protein_coding	xylogalacturonan deficient 1	Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis.	xylogalacturonan deficient 1;(source:Araport11)
AT5G19870.1	protein_coding	Family of unknown function (DUF716) 		transmembrane epididymal protein (DUF716);(source:Araport11)
AT5G07280.1	protein_coding	Leucine-rich repeat transmembrane protein kinase	Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther.	Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT5G07290.1	protein_coding	MEI2-like 4	AML4  A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML4 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM14. AML4 is expressed during embryo development (heart and torpedo stage) and in vegetative and floral apices.	MEI2-like 4;(source:Araport11)
AT5G07580.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	ethylene-responsive transcription factor;(source:Araport11)
AT5G08640.1	protein_coding	flavonol synthase 1	Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols. Co-expressed with CHI and CHS (qRT-PCR).	flavonol synthase 1;(source:Araport11)
AT5G08650.1	protein_coding	Small GTP-binding protein		Small GTP-binding protein;(source:Araport11)
AT5G36210.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G10740.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT5G10750.1	protein_coding	Protein of unknown function (DUF1336)		enhanced disease resistance-like protein (DUF1336);(source:Araport11)
AT5G10760.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G13330.1	protein_coding	related to AP2 6l	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	related to AP2 6l;(source:Araport11)
AT5G13340.1	protein_coding			arginine/glutamate-rich 1 protein;(source:Araport11)
AT5G13350.1	protein_coding	Auxin-responsive GH3 family protein		Auxin-responsive GH3 family protein;(source:Araport11)
AT5G13190.1	protein_coding		Encodes a plasma membrane localized LITAF domain protein that interacts with LSD1 and acts as a negative regulation of hypersensitive cell death.	GSH-induced LITAF domain protein;(source:Araport11)
AT5G13200.1	protein_coding	GRAM domain family protein	Encodes a protein with unknown function that is involved in hormone mediated regulation of seed germination/dormancy.	GRAM domain family protein;(source:Araport11)
AT5G13310.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G13320.1	protein_coding	Auxin-responsive GH3 family protein	Encodes an enzyme capable of conjugating amino acids to 4-substituted benzoates. 4-HBA (4-hydroxybenzoic acid) and pABA (4-aminobenzoate) may be targets of the enzyme in Arabidopsis, leading to the production of pABA-Glu, 4HBA-Glu, or other related compounds. This enzyme is involved in disease-resistance signaling. It is required for the accumulation of salicylic acid, activation of defense responses, and resistance to Pseudomonas syringae. Salicylic acid can decrease this enzyme's activity in vitro and may act as a competitive inhibitor. Expression of PBS3/GH3.12 can be detected in cotyledons, true leaves, hypocotyls, and occasionally in some parts of roots from 10-day-old seedlings.  No expression has been detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.	Auxin-responsive GH3 family protein;(source:Araport11)
AT5G37760.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G37770.1	protein_coding	EF hand calcium-binding protein family	Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in  plants subjected to touch, darkness, heat,  cold, hydrogen peroxide, abscisic acid  (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not  detectable. The putative CML24 regulatory region confers reporter expression at sites  of predicted mechanical stress; in regions undergoing growth; in vascular tissues and  various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2).  Also regulates nitric oxide levels.	EF hand calcium-binding protein family;(source:Araport11)
AT5G37780.1	protein_coding	calmodulin 1	encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.	calmodulin 1;(source:Araport11)
AT5G24510.1	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT5G24520.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes. Auxin and ethylene responsiveness of TTG1 transcription is lost in myb12 mutants.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G24500.1	protein_coding			fantom protein;(source:Araport11)
AT5G24440.1	protein_coding	CTC-interacting domain 13	RNA-binding protein, putative. Contains PAM2, PABC binding domain.	CTC-interacting domain 13;(source:Araport11)
AT5G10200.1	protein_coding	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein		ARM-repeat/Tetratricopeptide repeat (TPR)-like protein;(source:Araport11)
AT5G10210.1	protein_coding			nitric oxide synthase-interacting protein;(source:Araport11)
AT5G10220.1	protein_coding	annexin 6	Encodes a calcium-binding protein annexin (AnnAt6).	annexin 6;(source:Araport11)
AT5G10230.1	protein_coding	annexin 7	Encodes a calcium-binding protein annexin (AnnAt7).	annexin 7;(source:Araport11)
AT5G10190.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G23400.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G23410.1	other_rna			other_RNA;(source:Araport11)
AT5G23380.1	protein_coding	Protein of unknown function (DUF789)		hypothetical protein (DUF789);(source:Araport11)
AT5G23390.1	protein_coding	Plant protein of unknown function (DUF639)		polygalacturonase inhibitor (DUF639);(source:Araport11)
AT5G04410.1	protein_coding	NAC domain containing protein 2	NAC family member, functions as a transcriptional activator, regulates flavonoid biosynthesis under high light. The mRNA is cell-to-cell mobile.	NAC domain containing protein 2;(source:Araport11)
AT5G04420.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G04430.1	protein_coding	binding to TOMV RNA 1L (long form)	Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication.	binding to TOMV RNA 1L (long form);(source:Araport11)
AT5G04600.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G04440.1	protein_coding	Protein of unknown function (DUF1997)		RAP release 2, galactose-binding-like domain protein, putative (DUF1997);(source:Araport11)
AT5G04610.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G04620.1	protein_coding	biotin F	The cDNA encoding 7-keto-8-aminopelargonic acid (KAPA) synthase, the first committed enzyme of the biotin synthesis pathway has been cloned and its molecular function confirmed (functional complementation of an E. coli mutant). The subcellular localization of the enzyme (cytosol) proves that the biotin biosynthesis in plants takes place in different compartments which differs from the biosynthetic route found in microorganisms.	biotin F;(source:Araport11)
AT5G04460.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G04630.1	protein_coding	cytochrome P450, family 77, subfamily A, polypeptide 9	member of CYP77A	cytochrome P450, family 77, subfamily A, polypeptide 9;(source:Araport11)
AT5G04470.1	protein_coding	cyclin-dependent protein kinase inhibitors	Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins.  It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition.  It interacts with D-type cyclins in vivo.	cyclin-dependent protein kinase inhibitor;(source:Araport11)
AT5G04640.1	protein_coding	AGAMOUS-like 99		AGAMOUS-like 99;(source:Araport11)
AT5G04650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT5G04590.1	protein_coding	sulfite reductase	A.thaliana gene encoding sulfite reductase.	sulfite reductase;(source:Araport11)
AT5G34830.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G52510.1	protein_coding	SCARECROW-like 8		SCARECROW-like 8;(source:Araport11)
AT5G52540.1	protein_coding	Protein of unknown function (DUF819)		keratin-associated protein, putative (DUF819);(source:Araport11)
AT5G52550.1	protein_coding			stress response NST1-like protein;(source:Araport11)
AT5G09210.1	protein_coding	GC-rich sequence DNA-binding factor-like protein		GC-rich sequence DNA-binding factor-like protein;(source:Araport11)
AT5G09220.1	protein_coding	amino acid permease 2	member of AAAP family The mRNA is cell-to-cell mobile.	amino acid permease 2;(source:Araport11)
AT5G09230.1	protein_coding	sirtuin 2	Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).	sirtuin 2;(source:Araport11)
AT5G09240.1	protein_coding	ssDNA-binding transcriptional regulator		ssDNA-binding transcriptional regulator;(source:Araport11)
AT5G09250.1	protein_coding	ssDNA-binding transcriptional regulator	putative transcriptional co-activator (KIWI) mRNA, complete	ssDNA-binding transcriptional regulator;(source:Araport11)
AT5G09260.1	protein_coding	vacuolar protein sorting-associated protein 20.2		vacuolar protein sorting-associated protein 20.2;(source:Araport11)
AT5G09270.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G09520.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G09530.1	protein_coding	hydroxyproline-rich glycoprotein family protein	The gene encodes a unique protein which contains 36 repeats of a unique pentapeptide (Pro-Glu-Leu|Ile|Val-Pro-Lys). It has been shown tobe involved in growth and development.	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G10940.1	protein_coding	transducin family protein / WD-40 repeat family protein	ASG2 is farnesylated protein and this post-translational modification impacts its subcellular localization. It is the homolog of the human anti-obesity factor WDTC1 and is involved in the negative regulation of fatty acid biosynthesis. The non-farnesylated form displays a nucleo-cytosolic subcellular localization. The farnesylated form displays a cytosolic subcellular localization. Interaction with At4g05420 (DDB1a) was shown using BiFC approach.	transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G11130.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT5G10950.1	protein_coding	Tudor/PWWP/MBT superfamily protein		Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT5G10960.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G10970.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G10980.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT5G10990.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G11000.1	protein_coding	Plant protein of unknown function (DUF868)		hypothetical protein (DUF868);(source:Araport11)
AT5G11010.1	protein_coding	Pre-mRNA cleavage complex II protein family		Pre-mRNA cleavage complex II protein family;(source:Araport11)
AT5G22260.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein	Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors.	RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G22270.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G22280.1	protein_coding			peptidyl-prolyl cis-trans isomerase G;(source:Araport11)
AT5G22290.1	protein_coding	NAC domain containing protein 89	Encodes ANAC089, a membrane-tethered transcription factor that negatively regulates floral initiation. Also controls ER-stress-induced programmed cell death.	NAC domain containing protein 89;(source:Araport11)
AT5G22300.1	protein_coding	nitrilase 4	encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway. The mRNA is cell-to-cell mobile.	nitrilase 4;(source:Araport11)
AT5G22240.1	protein_coding	Ovate family protein		Ovate family protein;(source:Araport11)
AT5G22250.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Encodes one of the homologs of the yeast CCR4-associated factor 1: AT3G44260 (CAF1a), AT5G22250 (CAF1b). Has mRNA deadenylation activity.  Also plays a role in plant defense responses.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G13600.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G13610.1	protein_coding	Protein of unknown function (DUF155)	Encodes a mitochondria-localized protein involved in ABI4-mediated mitochondrial retrograde signalling.	sporulation RMD1-like protein, putative (DUF155);(source:Araport11)
AT5G13470.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G13620.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G13630.1	protein_coding	magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)	Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction.	magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH);(source:Araport11)
AT5G13560.1	protein_coding			structural maintenance of chromosomes protein;(source:Araport11)
AT5G13650.1	protein_coding	elongation factor family protein	Encodes SVR3, a putative chloroplast TypA translation elongation GTPase.  Loss of SVR3 suppresses variegation mediated by var2.  SVR3 is essential for plants’ ability to develop functional chloroplasts under chilling stress (8C), but not at normal temperature (22C).	elongation factor family protein;(source:Araport11)
AT5G13640.1	protein_coding	phospholipid:diacylglycerol acyltransferase	arabidopsis phospholipid:diacylglycerol acyltransferase (PDAT)	phospholipid:diacylglycerol acyltransferase;(source:Araport11)
AT5G13570.1	protein_coding	decapping 2	Encodes DCP2 with mRNA decapping activity.  DCP2 forms a mRNA decapping complex with DCP1 (At1g08370) and VCS (VARICOSE) (At3g13300). Recombinant DCP2 is enzymatically active in vitro, generating from capped mRNAs m7GDP, and 5’-phosphorylated mRNAs.  DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies.  Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP1.	decapping 2;(source:Araport11)
AT5G13660.1	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT5G13580.1	protein_coding	ABC-2 type transporter family protein	Belongs to a clade of five Arabidopsis thaliana ABCG half-transporters that are required for synthesis of an effective suberin barrier in roots and seed coats (ABCG2, ABCG6, and ABCG20) and for synthesis of an intact pollen wall (ABCG1 and ABCG16).	ABC-2 type transporter family protein;(source:Araport11)
AT5G13590.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G02240.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. The mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G14710.1	protein_coding			proteasome assembly chaperone-like protein;(source:Araport11)
AT5G14700.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G14890.1	protein_coding	NHL domain-containing protein		potassium transporter;(source:Araport11)
AT5G14690.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G14687.1	protein_coding	homeobox protein 32		homeobox protein 32;(source:Araport11)
AT1G33560.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family	Encodes a  NBS-LRR disease resistance protein that possesses N-terminal kinase subdomains. Activation tagged mutant of ADR1 showed elevated levels of SA and reactive oxygen species in addition to number of defense gene transcripts. Exhibits resistance to number of microbial pathogens.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G33550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G69330.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G69390.1	protein_coding	homologue of bacterial MinE 1	Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement.   It is an essential integral component of the plastid division machinery.	homologue of bacterial MinE 1;(source:Araport11)
AT1G69523.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G69380.1	protein_coding	Protein of unknown function (DUF155)	Encodes a mitochondria-localized protein that is required for cell division in the root meristem.	sporulation protein (DUF155);(source:Araport11)
AT1G69526.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G07135.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT1G07025.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G03055.1	protein_coding		Encodes the ortholog of rice D27.  It is plastid-localized and is required for the inhibition of secondary bud outgrowth and operates on a nonmobile precursor upstream of MAX1 in the SL biosynthesis pathway.	beta-carotene isomerase D27-like protein;(source:Araport11)
AT1G35950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05084.1);(source:TAIR10)
AT1G48410.1	protein_coding	Stabilizer of iron transporter SufD / Polynucleotidyl transferase	Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs.  There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC).  Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the  regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus.	Stabilizer of iron transporter SufD / Polynucleotidyl transferase;(source:Araport11)
AT1G48420.1	protein_coding	D-cysteine desulfhydrase	Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3.  Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. There is conflicting evidence on its 1-aminocyclopropane-1-carboxylate deaminase activity. Involved in regulating ethylene levels.	D-cysteine desulfhydrase;(source:Araport11)
AT1G17665.1	protein_coding			CA-responsive protein;(source:Araport11)
AT1G17745.1	protein_coding	D-3-phosphoglycerate dehydrogenase	encodes a 3-Phosphoglycerate dehydrogenase The mRNA is cell-to-cell mobile.	D-3-phosphoglycerate dehydrogenase;(source:Araport11)
AT1G50670.1	protein_coding	OTU-like cysteine protease family protein		OTU-like cysteine protease family protein;(source:Araport11)
AT1G50510.1	protein_coding	indigoidine synthase A family protein		indigoidine synthase A family protein;(source:Araport11)
AT1G50480.1	protein_coding	10-formyltetrahydrofolate synthetase	10-formyltetrahydrofolate synthetase (THFS) mRNA, complete The mRNA is cell-to-cell mobile.	10-formyltetrahydrofolate synthetase;(source:Araport11)
AT1G50530.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G50620.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G50550.1	pseudogene		a cytochrome P450 pseudogene	pseudogene of cytochrome P450;(source:Araport11)
AT1G50570.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G50660.1	protein_coding			actin cytoskeleton-regulatory complex pan-like protein;(source:Araport11)
AT1G50490.1	protein_coding	ubiquitin-conjugating enzyme 20	Encodes one of two ubiquitin-conjugating enzymes  belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells.	ubiquitin-conjugating enzyme 20;(source:Araport11)
AT1G51400.1	protein_coding	Photosystem II 5 kD protein		Photosystem II 5 kD protein;(source:Araport11)
AT1G51150.1	protein_coding	DegP protease 6	Encodes a putative DegP protease.	DegP protease 6;(source:Araport11)
AT1G51160.1	protein_coding	SNARE-like superfamily protein	TRAPP protein BET5 homolog.	SNARE-like superfamily protein;(source:Araport11)
AT1G67630.1	protein_coding	DNA polymerase alpha 2		DNA polymerase alpha 2;(source:Araport11)
AT1G67640.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G67590.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT1G67620.1	protein_coding	Lojap-related protein		Lojap-related protein;(source:Araport11)
AT1G67520.1	protein_coding	lectin protein kinase family protein		lectin protein kinase family protein;(source:Araport11)
AT1G67460.1	protein_coding	Minichromosome maintenance (MCM2/3/5) family protein		Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT1G67600.1	protein_coding	Acid phosphatase/vanadium-dependent haloperoxidase-related protein		Acid phosphatase/vanadium-dependent haloperoxidase-related protein;(source:Araport11)
AT1G67510.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G67500.1	protein_coding	recovery protein 3	Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).	recovery protein 3;(source:Araport11)
AT1G67490.1	protein_coding	glucosidase 1	Encodes an alpha-glucosidase I enzyme that catalyzes the first step in N-linked glycan processing. Localized to the endoplasmic reticulum (ER).	glucosidase 1;(source:Araport11)
AT1G67623.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G67480.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G67635.1	protein_coding			phosphatidylinositol 4-kinase gamma-like protein;(source:Araport11)
AT1G11915.1	protein_coding			wall-associated receptor kinase galacturonan-binding protein;(source:Araport11)
AT1G34065.1	protein_coding	S-adenosylmethionine carrier 2		S-adenosylmethionine carrier 2;(source:Araport11)
AT1G34575.1	protein_coding	FAD-binding Berberine family protein		FAD-binding Berberine family protein;(source:Araport11)
AT1G57770.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT1G53325.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G53160.1	protein_coding	squamosa promoter binding protein-like 4	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors.  Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change.  Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	squamosa promoter binding protein-like 4;(source:Araport11)
AT1G53345.1	protein_coding			DHHA1 domain protein;(source:Araport11)
AT1G57870.1	protein_coding	shaggy-like kinase 42		shaggy-like kinase 42;(source:Araport11)
AT1G12845.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G28140.1	protein_coding			integral membrane family protein;(source:Araport11)
AT1G28130.1	protein_coding	Auxin-responsive GH3 family protein	Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.	Auxin-responsive GH3 family protein;(source:Araport11)
AT1G28135.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G28160.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G28150.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G56380.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G56360.1	protein_coding	purple acid phosphatase 6		purple acid phosphatase 6;(source:Araport11)
AT1G56345.1	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT1G56520.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G54820.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G54840.1	protein_coding	HSP20-like chaperones superfamily protein	Encodes an atypical member of the sHSP20 family that is involved in histone demethylation. Loss of function mutations show increased methylation. IMD2 co-localizes to the nucleus with, and physically interacts with, IMD1, a protein involved in RNA directed DNA methylation. IMD2 contains an alpha crystallin domain , that is required for its function.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G19025.1	protein_coding	DNA repair metallo-beta-lactamase family protein		DNA repair metallo-beta-lactamase family protein;(source:Araport11)
AT1G26090.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G53010.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G52990.1	protein_coding	thioredoxin family protein		thioredoxin family protein;(source:Araport11)
AT1G52720.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G52730.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G52710.1	protein_coding	Rubredoxin-like superfamily protein		Rubredoxin-like superfamily protein;(source:Araport11)
AT1G53000.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Encodes a mitochondrial-localized CMP-KDO (3-deoxy-D-manno-octulosonate) synthetase. This is the enzyme activating KDO as a nucleotide sugar prior to its   incorporation into rhamnogalacturonan-II. Heterozygous mutants are defective in pollen development and in pollen tube elongation.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT1G56350.1	protein_coding	Peptide chain release factor 2		Peptide chain release factor 2;(source:Araport11)
AT1G55820.1	protein_coding	Kinase-related protein of unknown function (DUF1296)		lysine-specific demethylase, putative (DUF1296);(source:Araport11)
AT1G55915.1	protein_coding	zinc ion binding	DNA-protein crosslink repair protease. WSS1A is involved in DNA-protein crosslink (DPC) repair and acts in independent pathways of the nuclease MUS81 and the phosphodiesterase TDP1. WSS1A is involved in the repair of replicative DNA damage (determination of dead cells in the root meristem using propidium Iodide staining). CRISPR wss1A mutants are camptothecin (CPT) and cis-platin hypersensitive and exhibit a fasciated growth phenotype and shortened roots	zinc ion binding protein;(source:Araport11)
AT1G55810.1	protein_coding	uridine kinase-like 3	One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 3;(source:Araport11)
AT1G56010.1	protein_coding	NAC domain containing protein 1	Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1)	NAC domain containing protein 1;(source:Araport11)
AT1G55980.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT1G56020.1	protein_coding			serine/arginine repetitive matrix-like protein;(source:Araport11)
AT1G09575.1	protein_coding	Protein of unknown function (DUF607)	Mitochondrial calcium channel.	calcium uniporter-like protein (DUF607);(source:Araport11)
AT1G09415.1	protein_coding	NIM1-interacting 3	encodes a kinase that physically interacts with NPR1/NIM1	NIM1-interacting 3;(source:Araport11)
AT1G68840.1	protein_coding	related to ABI3/VP1 2	Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE) The mRNA is cell-to-cell mobile.	related to ABI3/VP1 2;(source:Araport11)
AT1G68795.1	protein_coding	CLAVATA3/ESR-RELATED 12	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 12;(source:Araport11)
AT1G68765.1	protein_coding	Putative membrane lipoprotein	Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely.	Putative membrane lipoprotein;(source:Araport11)
AT1G68810.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G68850.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT1G68830.1	protein_coding	STT7 homolog STN7	STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptation. STN7 is involved in state transitions.	Serine/Threonine kinase domain protein;(source:Araport11)
AT1G14345.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G33811.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G10385.1	protein_coding	Vps51/Vps67 family (components of vesicular transport) protein		Vps51/Vps67 family (components of vesicular transport) protein;(source:Araport11)
AT1G19620.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G29395.1	protein_coding	COLD REGULATED 314 INNER MEMBRANE 1	Integral membrane protein in the inner  envelope of chloroplasts. Provide  freezing tolerance. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment.	COLD REGULATED 314 INNER MEMBRANE 1;(source:Araport11)
AT1G29700.1	protein_coding	Metallo-hydrolase/oxidoreductase superfamily protein		Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT1G70760.1	protein_coding	inorganic carbon transport protein-related	a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. The mRNA is cell-to-cell mobile.	inorganic carbon transport protein-like protein;(source:Araport11)
AT1G70800.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	Encodes a novel NPH3/phototropin binding factor with a calcium binding domain that negatively affects hypocotyl bending under blue light conditions in Arabidopsis thaliana and may regulate phototropism.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G70770.1	protein_coding	Protein of unknown function DUF2359, transmembrane		transmembrane protein (Protein of unknown function DUF2359, transmembrane);(source:Araport11)
AT1G70985.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G70895.1	protein_coding	CLAVATA3/ESR-RELATED 17	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 17;(source:Araport11)
AT1G70780.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G18485.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G18280.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G18270.1	protein_coding	ketose-bisphosphate aldolase class-II family protein		ketose-bisphosphate aldolase class-II family protein;(source:Araport11)
AT1G18290.1	protein_coding			DUF4228 domain protein;(source:Araport11)
AT1G18300.1	protein_coding	nudix hydrolase homolog 4		nudix hydrolase homolog 4;(source:Araport11)
AT1G64450.1	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT1G64405.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G64355.1	protein_coding			1-acyl-sn-glycerol-3-phosphate acyltransferase;(source:Araport11)
AT1G54115.1	protein_coding	cation calcium exchanger 4	Involved in cation (Na and K) homeostasis.	cation calcium exchanger 4;(source:Araport11)
AT1G76450.1	protein_coding	Photosystem II reaction center PsbP family protein		Photosystem II reaction center PsbP family protein;(source:Araport11)
AT1G76280.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G76410.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G76430.1	protein_coding	phosphate transporter 1;9	Encodes Pht1;9, a member of the Pht1 family of phosphate transporters which include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341).	phosphate transporter 1;(source:Araport11)
AT1G76300.1	protein_coding	snRNP core protein SMD3		snRNP core protein SMD3;(source:Araport11)
AT1G76440.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G76405.1	protein_coding			outer envelope pore 21B-like protein;(source:Araport11)
AT1G76490.1	protein_coding	hydroxy methylglutaryl CoA reductase 1	Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confine The mRNA is cell-to-cell mobile.	hydroxy methylglutaryl CoA reductase 1;(source:Araport11)
AT1G76310.1	protein_coding	CYCLIN B2;4	core cell cycle genes	CYCLIN B2;(source:Araport11)
AT1G76420.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G76460.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G76320.1	protein_coding	FAR1-related sequence 4		FAR1-related sequence 4;(source:Araport11)
AT1G76480.1	protein_coding			caveolin-1 protein;(source:Araport11)
AT1G35490.1	protein_coding	bZIP family transcription factor		bZIP family transcription factor;(source:Araport11)
AT1G35500.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G42050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G47655.1	protein_coding	Dof-type zinc finger DNA-binding family protein		Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT1G47485.1	protein_coding		Encodes CEP1, a 15-amino-acid peptide, which is mainly expressed in the lateral root primordia.  When overexpressed or externally applied, CEP1 arrests root growth.  CEP1 is a candidate for a novel peptide plant hormone.	carboxy-terminally encoded peptide protein;(source:Araport11)
AT1G50560.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 25	member of CYP705A	cytochrome P450, family 705, subfamily A, polypeptide 25;(source:Araport11)
AT1G50470.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G50600.1	protein_coding	scarecrow-like 5	Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family.	scarecrow-like 5;(source:Araport11)
AT1G50630.1	protein_coding	Protein of unknown function (DUF3537)		extracellular ligand-gated ion channel protein (DUF3537);(source:Araport11)
AT1G50520.1	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 27	member of CYP705A The mRNA is cell-to-cell mobile.	cytochrome P450, family 705, subfamily A, polypeptide 27;(source:Araport11)
AT1G50610.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G50580.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G50575.1	protein_coding	Putative lysine decarboxylase family protein		Putative lysine decarboxylase family protein;(source:Araport11)
AT1G50500.1	protein_coding	Membrane trafficking VPS53 family protein	encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress.	Membrane trafficking VPS53 family protein;(source:Araport11)
AT1G50650.1	protein_coding	Stigma-specific Stig1 family protein	KRS is a member of the STIG1 family of peptides. Its expression in embryos appears to be dependent upon ZOU.Loss of function results in a reduction of &#945;-JIM12 labelled 'sheath' around the developing embryo.	Stigma-specific Stig1 family protein;(source:Araport11)
AT1G50590.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT1G50640.1	protein_coding	ethylene responsive element binding factor 3	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-3). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	ethylene responsive element binding factor 3;(source:Araport11)
AT1G27435.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G27385.1	protein_coding			phosphoribosylformylglycinamidine synthase;(source:Araport11)
AT1G72000.1	protein_coding	Plant neutral invertase family protein		Plant neutral invertase family protein;(source:Araport11)
AT1G70450.1	protein_coding	Protein kinase superfamily protein	Its expression is enriched in root hair cells (compared to non-root hair cells) and this enrichment is associated with increase in the transcription-associated mark trimethylation of H3 lysine 4 (H3K4me3) and decrease in the Polycomb silencing-associated mark trimethylation of H3 lysine 27 (H3K27me3) in root hair cells relative to non-root hair cells.	Protein kinase superfamily protein;(source:Araport11)
AT1G79990.1	protein_coding	structural molecules		coatomer subunit beta-2;(source:Araport11)
AT1G80020.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 5.0e-62 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G79940.1	protein_coding	DnaJ / Sec63 Brl domains-containing protein	J domain protein localized in ER membrane. Mutants have defective pollen germination.	DnaJ / Sec63 Brl domains-containing protein;(source:Araport11)
AT1G79930.1	protein_coding	heat shock protein 91	encodes high molecular weight heat shock protein 70 not a HSP90 homolog, mRNA is constitutively expressed but transiently induced after heat shock	heat shock protein 91;(source:Araport11)
AT1G80260.1	protein_coding	Spc97 / Spc98 family of spindle pole body (SBP) component		Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT1G80000.1	protein_coding	CASC3/Barentsz eIF4AIII binding		CASC3/Barentsz eIF4AIII binding protein;(source:Araport11)
AT1G19600.1	protein_coding	pfkB-like carbohydrate kinase family protein		pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT1G19610.1	protein_coding	Arabidopsis defensin-like protein	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	defensin-like protein;(source:Araport11)
AT1G19570.1	protein_coding	dehydroascorbate reductase	Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.Encodes about 50-60% of extractable leaf GSH-dependent DHAR activity, but single knockout mutants show unaltered ascorbate and glutathione status in optimal and oxidative stress conditions (PMID:28381499). Acts redundantly with DHAR2 to oxidize glutathione in response to increased intracelullar hydrogen peroxide (catalase deficiency) .   Complementation of a cat2 dhar1 dhar2 dhar3 quadruple mutant with DHAR1 fully restores cat2 phenotype and pathogenesis-related responses   (PMID:28381499).	dehydroascorbate reductase;(source:Araport11)
AT1G19485.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G51745.1	protein_coding	Tudor/PWWP/MBT superfamily protein		Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT1G51810.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G51820.1	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G22885.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G22985.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G79970.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G79810.1	protein_coding	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein	Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes.	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G79770.1	protein_coding	Protein of unknown function (DUF1677)		CASP-like protein (DUF1677);(source:Araport11)
AT1G79790.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	Encodes a chloroplast-localized FMN hydrolase that whose phosphatase activity is FMN-specific.	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G79780.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT1G79820.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G79800.1	protein_coding	early nodulin-like protein 7		early nodulin-like protein 7;(source:Araport11)
AT1G79950.1	protein_coding	RAD3-like DNA-binding helicase protein	Encodes a homologue of human Regulator of Telomere Elongation Helicase1 (RTEL1). Plays a central role in the preservation of genome stability.	RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G79960.1	protein_coding	ovate family protein 14		ovate family protein 14;(source:Araport11)
AT1G80010.1	protein_coding	FAR1-related sequence 8		FAR1-related sequence 8;(source:Araport11)
AT1G16530.1	protein_coding	ASYMMETRIC LEAVES 2-like 9		ASYMMETRIC LEAVES 2-like 9;(source:Araport11)
AT1G16705.1	protein_coding	p300/CBP acetyltransferase-related protein-related		p300/CBP acetyltransferase-related protein-like protein;(source:Araport11)
AT1G17480.1	protein_coding	IQ-domain 7	Transient expression of Pro35S:GFP-IQD7 in leaves of N. benthamiana alters microtubule organization, in patterns similar to Pro35S:GFP-IQD8 and Pro35S:GFP-IQD6.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 7;(source:Araport11)
AT1G17410.1	protein_coding	Nucleoside diphosphate kinase family protein		Nucleoside diphosphate kinase family protein;(source:Araport11)
AT1G17495.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.7e-213 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G17440.1	protein_coding	Transcription initiation factor TFIID subunit A	Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12.  The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction.  Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression. Cytokinin-hypersensitive 1 (CKH1) mutants are characterized by rapidly growing calli with a green color at low levels of cytokinins, which are insufficient to induce such cytokinin responses in wild-type explants. It is hypothesized that CKH1 acts as a negative regulator of cytokinin signaling in Arabidopsis.	Transcription initiation factor TFIID subunit A;(source:Araport11)
AT1G17400.1	protein_coding		Protein of unknown function. Similar to LAZY1, a gene required or gravitropic response in shoots and roots. Involved in determining lateral root branch angle.	hypothetical protein;(source:Araport11)
AT1G17360.1	protein_coding			LOW protein: protein phosphatase 1 regulatory subunit-like protein;(source:Araport11)
AT1G17650.1	protein_coding	glyoxylate reductase 2	Glyoxylate reductase located in chloroplasts.	glyoxylate reductase 2;(source:Araport11)
AT1G17460.1	protein_coding	TRF-like 3	Arabidopsis thaliana myb family transcription factor (At1g17460)	TRF-like 3;(source:Araport11)
AT1G74700.1	protein_coding	tRNAse Z1	Encodes a protein with RNAse Z activity suggesting a role in tRNA processing.	tRNAse Z1;(source:Araport11)
AT1G74680.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT1G74690.1	protein_coding	IQ-domain 31	Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 31;(source:Araport11)
AT1G29940.1	protein_coding	nuclear RNA polymerase A2	Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).	nuclear RNA polymerase A2;(source:Araport11)
AT1G64430.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G64440.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes a protein with UDP-D-glucose 4-epimerase activity. Mutants in RHD1 have abnormally shaped root hairs with a bulbous region at the base. Allelic to REB1 encoding a UDP-D-glucose 4-epimerase involved in cell wall biosynthesis.Involved in growth and cell wall carbohydrate biosynthesis.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G67200.1	pseudogene			pseudogene of Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G74350.1	protein_coding	Intron maturase, type II family protein	Encodes nMAT4, a maturase factor required for nad1 pre-mRNA processing and maturation. Essential for holocomplex I biogenesis in Arabidopsis mitochondria.	Intron maturase, type II family protein;(source:Araport11)
AT1G74340.1	protein_coding	dolichol phosphate-mannose biosynthesis regulatory protein-related	Encodes a subunit of the dolichol phosphate mannase synthase (DPMS) complex that may serve as membrane anchors for the catalytic core, DPMS1, or provide catalytic assistance. It is localized in the ER and mediates isoprenyl-linked glycan biogenesis.	dolichol phosphate-mannose biosynthesis regulatory protein-like protein;(source:Araport11)
AT1G74330.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G66950.1	protein_coding	pleiotropic drug resistance 11	Encodes a plasma membrane-localized ABC transporter. Confers tolerance to herbicide paraquat.	pleiotropic drug resistance 11;(source:Araport11)
AT1G66940.1	protein_coding	protein kinase-related		kinase-like protein;(source:Araport11)
AT1G36940.1	protein_coding			myotubularin-like protein;(source:Araport11)
AT1G79710.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G79760.1	protein_coding	downstream target of AGL15-4	Identified as target of the AGL15 binding motif CArG.	downstream target of AGL15-4;(source:Araport11)
AT1G79740.1	protein_coding	hAT transposon superfamily		hAT transposon superfamily;(source:Araport11)
AT1G79720.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G79730.1	protein_coding	hydroxyproline-rich glycoprotein family protein	Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit.  Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin.  Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. Member of PAF-C complex.	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G79750.1	protein_coding	NADP-malic enzyme 4	The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.	NADP-malic enzyme 4;(source:Araport11)
AT1G10750.1	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal peptidase, putative (DUF239);(source:Araport11)
AT1G10740.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G10730.1	protein_coding	Clathrin adaptor complexes medium subunit family protein		Clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT1G10690.1	protein_coding			cyclin-dependent kinase inhibitor;(source:Araport11)
AT1G10760.1	protein_coding	Pyruvate phosphate dikinase, PEP/pyruvate binding domain	Encodes an &#945;-glucan, water dikinase required for starch degradation. Involved  in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.	Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein;(source:Araport11)
AT1G10720.1	protein_coding	BSD domain-containing protein		BSD domain-containing protein;(source:Araport11)
AT1G17145.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G55790.1	protein_coding	Domain of unknown function (DUF2431)		ferredoxin-fold anticodon-binding domain protein;(source:Araport11)
AT1G55800.1	protein_coding	Domain of unknown function (DUF2431)		hypothetical protein;(source:Araport11)
AT1G55805.1	protein_coding	BolA-like family protein		BolA-like family protein;(source:Araport11)
AT1G55830.1	protein_coding			coiled-coil protein;(source:Araport11)
AT1G48175.1	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT1G24600.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G24575.1	protein_coding			DEAD-box ATP-dependent RNA helicase-like protein;(source:Araport11)
AT1G03905.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G09795.1	protein_coding	ATP phosphoribosyl transferase 2	ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesis	ATP phosphoribosyl transferase 2;(source:Araport11)
AT1G09815.1	protein_coding	polymerase delta 4		polymerase delta 4;(source:Araport11)
AT1G64185.1	protein_coding	Lactoylglutathione lyase / glyoxalase I family protein	Vicinal oxygen chelate (VOC) superfamily member.	Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT1G64105.1	protein_coding	NAC domain containing protein 27		NAC domain containing protein 27;(source:Araport11)
AT1G02813.1	protein_coding	Protein of unknown function, DUF538		pectinesterase (Protein of unknown function, DUF538);(source:Araport11)
AT1G02816.1	protein_coding	Protein of unknown function, DUF538		pectinesterase (Protein of unknown function, DUF538);(source:Araport11)
AT1G53760.1	protein_coding			K+-H+ exchange-like protein;(source:Araport11)
AT1G53750.1	protein_coding	regulatory particle triple-A 1A	26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,	regulatory particle triple-A 1A;(source:Araport11)
AT1G60870.1	protein_coding	maternal effect embryo arrest 9		maternal effect embryo arrest 9;(source:Araport11)
AT1G51170.1	protein_coding	Protein kinase superfamily protein	Encodes an active AGC VIII protein kinase that interacts with the putative transcription factor ATS and regulates planar growth during integument development in the ovule.  Mutants exhibit ectopic growth in filaments and petals, as well as aberrant embryogenesis.	Protein kinase superfamily protein;(source:Araport11)
AT1G34245.1	protein_coding	Putative membrane lipoprotein	Encodes a secretory peptide EPF2 expressed in proliferating cells of the stomatal lineage, known as meristemoids, and in guard mother cells, the progenitors of stomata.  Controls asymmetric cell divisions during stomatal development.  EPF2 is related to EPF1, also involved in stomatal development. Its transcript levels change after inducing MUTE expression in a mute background. EPF2 binds to the ER receptor triggering MAPK activation that in turn inhibits stomatal development. EPF2 competes with STOMAGEN for binding to receptor protein kinases ER, and TMM.	Putative membrane lipoprotein;(source:Araport11)
AT1G69180.1	protein_coding	Plant-specific transcription factor YABBY family protein	Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region. CRC targets YABBY genes  such as YUC4 in gynoecium development.	Plant-specific transcription factor YABBY family protein;(source:Araport11)
AT1G69400.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G69240.1	protein_coding	methyl esterase 15	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.	methyl esterase 15;(source:Araport11)
AT1G69260.1	protein_coding	ABI five binding protein		ABI five binding protein;(source:Araport11)
AT1G69410.1	protein_coding	eukaryotic elongation factor 5A-3	Encodes eIF5A-2, a putative eukaryotic translation initiation factor.  There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410.	eukaryotic elongation factor 5A-3;(source:Araport11)
AT1G69340.1	protein_coding	appr-1-p processing enzyme family protein		appr-1-p processing enzyme family protein;(source:Araport11)
AT1G69210.1	protein_coding	Uncharacterised protein family UPF0090		Uncharacterized protein family UPF0090;(source:Araport11)
AT1G69370.1	protein_coding	chorismate mutase 3	Encodes chorismate mutase 3 (CM3).	chorismate mutase 3;(source:Araport11)
AT1G69110.1	pseudogene			pseudogene of Ribosomal protein S10p/S20e family protein;(source:Araport11)
AT1G69270.1	protein_coding	receptor-like protein kinase 1	RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1. Mutations in RPK1 uncouple cotyledon anlagen and primordia by modulating epidermal cell shape and polarity.	receptor-like protein kinase 1;(source:Araport11)
AT1G69170.1	protein_coding	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein	Encodes SPL6. Required for the resistance mediated by the TIR-NB-LRR RPS4 against Pseudomonas syringae carrying the avrRps4 effector. Transcriptome analysis indicates that SPL6 positively regulates a subset of defense genes.	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein;(source:Araport11)
AT1G69280.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G69320.1	protein_coding	CLAVATA3/ESR-RELATED 10	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 10;(source:Araport11)
AT1G69295.1	protein_coding	plasmodesmata callose-binding protein 4	Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.	plasmodesmata callose-binding protein 4;(source:Araport11)
AT1G69420.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT1G69360.1	protein_coding	Plant protein of unknown function (DUF863)		T-box transcription factor, putative (DUF863);(source:Araport11)
AT1G69290.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G69350.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G69200.1	protein_coding	fructokinase-like 2	Encodes a fructokinase-like protein (AT3G54090/FLN1, AT1G69200/FLN2), a member of the pfkB-carbohydrate kinase family.  FLN1 and FLN2 are potential plastidial thioredoxin z (TRX z) targets. Mutants display mutant chloroplast development, general plant growth and development defects and defects in PEP-dependent transcription. The mRNA is cell-to-cell mobile.	fructokinase-like protein;(source:Araport11)
AT1G07705.1	protein_coding	NOT2 / NOT3 / NOT5 family		NOT2 / NOT3 / NOT5 family;(source:Araport11)
AT1G07795.1	protein_coding			forkhead box protein G1;(source:Araport11)
AT1G69570.1	protein_coding	Dof-type zinc finger DNA-binding family protein	CDF5 is a circadian regulated transcript that is antiphasic with respect to its natural antisense transcript (NAT) FLORE (AT1G69572).CDF5 transcript accumulation delays flowering. CDF5 links circadian oscillation and photoperiodism.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT1G69560.1	protein_coding	myb domain protein 105	Encodes LOF2 (LATERAL ORGAN FUSION2), a MYB-domain transcription factor expressed in organ boundaries.  Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF1 (At1g26780).	myb domain protein 105;(source:Araport11)
AT1G70640.1	protein_coding	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein		octicosapeptide/Phox/Bem1p (PB1) domain-containing protein;(source:Araport11)
AT1G70620.1	protein_coding	cyclin-related		cyclin-like protein;(source:Araport11)
AT1G70610.1	protein_coding	transporter associated with antigen processing protein 1	member of TAP subfamily	transporter associated with antigen processing protein 1;(source:Araport11)
AT1G70580.1	protein_coding	alanine-2-oxoglutarate aminotransferase 2	Encodes a protein with glyoxylate aminotransferase activity. It can act on a number of different small substrates and amino acids in vitro.	alanine-2-oxoglutarate aminotransferase 2;(source:Araport11)
AT1G68585.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G74710.1	protein_coding	ADC synthase superfamily protein	Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid.  Its function may be redundant with that of ICS2 (AT1G18870).	ADC synthase superfamily protein;(source:Araport11)
AT1G57540.1	protein_coding			40S ribosomal protein;(source:Araport11)
AT1G73805.1	protein_coding	Calmodulin binding protein-like	Encodes SAR Deficient 1 (SARD1), a key regulator for ICS1 (Isochorismate Synthase 1) induction and salicylic acid (SA) synthesis.	Calmodulin binding protein-like protein;(source:Araport11)
AT1G73655.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein		FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT1G73850.1	protein_coding	Protein of unknown function (DUF1666)		DNA ligase (DUF1666);(source:Araport11)
AT1G73860.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G71696.1	protein_coding	carboxypeptidase D, putative	Encodes a Putative Zn2+ carboxypeptidase, 4 splice variants have been identified but not characterized for different functions and/or expression patterns.SOL1 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol1 partially suppresses the short root phenotype caused  by CLE19 overexpression.	carboxypeptidase D;(source:Araport11)
AT1G71697.1	protein_coding	choline kinase 1	Encodes choline kinase.  mRNA levels are increased in response to wounding. The mRNA is cell-to-cell mobile.	choline kinase 1;(source:Araport11)
AT1G71680.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G71690.1	protein_coding	Protein of unknown function (DUF579)		glucuronoxylan 4-O-methyltransferase-like protein (DUF579);(source:Araport11)
AT1G71695.1	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT1G71691.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G71692.1	protein_coding	AGAMOUS-like 12	Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots.	AGAMOUS-like 12;(source:Araport11)
AT1G23200.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily	Encodes a pectin methyl esterase involved in embryo development.	Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT1G30515.1	protein_coding			GATA zinc finger protein;(source:Araport11)
AT1G49245.1	protein_coding	Prefoldin chaperone subunit family protein		Prefoldin chaperone subunit family protein;(source:Araport11)
AT1G49015.1	protein_coding	DPP6 N-terminal domain-like protein		DPP6 N-terminal domain-like protein;(source:Araport11)
AT1G31550.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G31570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT1G31540.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G26120.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G26100.1	protein_coding	Cytochrome b561/ferric reductase transmembrane protein family		Cytochrome b561/ferric reductase transmembrane protein family;(source:Araport11)
AT1G26110.1	protein_coding	decapping 5	Encodes Decapping 5, required for mRNA decapping, P-body formation and translational repression during postembryonic development.	decapping 5;(source:Araport11)
AT1G66420.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT1G66410.1	protein_coding	calmodulin 4	encodes a calmodulin	calmodulin 4;(source:Araport11)
AT1G17470.1	protein_coding	developmentally regulated G-protein 1	Encodes a member of the DRG (developmentally regulated G-protein) family expressed throughout the plant, with highest expression in actively growing tissues. Has GTPase activity.	developmentally regulated G-protein 1;(source:Araport11)
AT1G17420.1	protein_coding	lipoxygenase 3	LOX3 encode  a Lipoxygenase. Lipoxygenases (LOXs) catalyze the oxygenation of fatty acids (FAs).	lipoxygenase 3;(source:Araport11)
AT1G17490.1	protein_coding			epidermal patterning factor-like protein;(source:Araport11)
AT1G17430.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G17455.1	protein_coding	ELF4-like 4		ELF4-like 4;(source:Araport11)
AT1G17370.1	protein_coding	oligouridylate binding protein 1B	Encodes an RNA–binding protein involved in stress granule formation. Regulated by a transposable element small RNA.	oligouridylate binding protein 1B;(source:Araport11)
AT1G17380.1	protein_coding	jasmonate-zim-domain protein 5		jasmonate-zim-domain protein 5;(source:Araport11)
AT1G17450.1	protein_coding	B-block binding subunit of TFIIIC		B-block binding subunit of TFIIIC;(source:Araport11)
AT1G17390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1);(source:TAIR10)
AT1G29330.1	protein_coding	ER lumen protein retaining receptor family protein	Encodes a protein similar in sequence to animal and yeast endoplasmic reticulum retention signal receptor. This protein can functionally complement the yeast homologue. Transcript is detected in flower buds, stems, root, and leaves.	ER lumen protein retaining receptor family protein;(source:Araport11)
AT1G28960.1	protein_coding	nudix hydrolase homolog 15	Encodes a ppGpp pyrophosphohydrolase.	nudix hydrolase homolog 15;(source:Araport11)
AT1G29195.1	protein_coding			phosphatidylinositol 4-phosphate 5-kinase MSS4-like protein;(source:Araport11)
AT1G72830.1	protein_coding	nuclear factor Y, subunit A3	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. Expression is upregulated in the shoot of cax1/cax3 mutant.	nuclear factor Y, subunit A3;(source:Araport11)
AT1G72810.1	protein_coding	Pyridoxal-5'-phosphate-dependent enzyme family protein		Pyridoxal-5-phosphate-dependent enzyme family protein;(source:Araport11)
AT1G72820.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G20630.1	protein_coding	catalase 1	Catalyzes the reduction of hydrogen peroxide using heme group as cofactor. Protects cells from toxicity by H2O2.	catalase 1;(source:Araport11)
AT1G20693.1	protein_coding	high mobility group B2	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. The mRNA is cell-to-cell mobile.	high mobility group B2;(source:Araport11)
AT1G20696.1	protein_coding	high mobility group B3	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. The mRNA is cell-to-cell mobile.	high mobility group B3;(source:Araport11)
AT1G20580.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT1G20540.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G20620.1	protein_coding	catalase 3	Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. The mRNA is cell-to-cell mobile.	catalase 3;(source:Araport11)
AT1G20600.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT1G20560.1	protein_coding	acyl activating enzyme 1		acyl activating enzyme 1;(source:Araport11)
AT1G20590.1	protein_coding	Cyclin family protein		cyclin;(source:Araport11)
AT1G22015.1	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT1G49975.1	protein_coding			photosystem I reaction center subunit N;(source:Araport11)
AT1G25570.1	protein_coding	Di-glucose binding protein with Leucine-rich repeat domain		Di-glucose binding protein with Leucine-rich repeat domain-containing protein;(source:Araport11)
AT1G25580.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G74055.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G13195.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G05575.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G71200.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	bHLH160 transcription factor. Induced by copper deficiency and seems to mediate copper uptake along with SPL7.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G71210.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G28395.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G28375.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G73160.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G73130.1	protein_coding		ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	mucin;(source:Araport11)
AT1G73120.1	protein_coding			F-box/RNI superfamily protein;(source:Araport11)
AT1G16520.1	protein_coding		NAI1 interacting protein, involved in ER body and vesicle formation.	interactor of constitutive active ROPs protein;(source:Araport11)
AT1G25375.1	protein_coding	Metallo-hydrolase/oxidoreductase superfamily protein		Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT1G25275.1	protein_coding		Thionin-like gene involved in resistance against the beet cyst nematode (Heterodera schachtii).	thionin-like protein;(source:Araport11)
AT1G50760.1	protein_coding	Aminotransferase-like, plant mobile domain family protein		Aminotransferase-like, plant mobile domain family protein;(source:Araport11)
AT1G69220.1	protein_coding	Protein kinase superfamily protein	Encodes serine/threonine kinase 1 (SIK1), a Hippo homolog. Regulates cell proliferation and cell expansion.	Protein kinase superfamily protein;(source:Araport11)
AT1G69190.1	protein_coding	Dihydropterin pyrophosphokinase / Dihydropteroate synthase	encodes a bifunctional cytosolic hydroxymethyldihydropterin pyrophosphokinase/ dihydropteroate synthase (HPPK/DHPS)that is involved in tetrahydrofolate biosynthesis and is responsive to oxidative stress.	Dihydropterin pyrophosphokinase / Dihydropteroate synthase;(source:Araport11)
AT1G69250.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT1G69230.1	protein_coding	SPIRAL1-like2	SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.	SPIRAL1-like2;(source:Araport11)
AT1G70790.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	C2-domain ABA-related (CAR) protein, involved in the recruitment of ABA receptors to the plasma membrane to facilitate ABA signaling. Its stability and dynamic localization is regulated by LOT1.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G70550.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT1G70590.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G70630.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein		Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G70560.1	protein_coding	tryptophan aminotransferase of Arabidopsis 1	TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln. Lines carrying mutations in this gene are unaffected by auxin transporter inhibitor NPA. Double mutant analysis and exogenous auxin treatment suggest that this gene is required for auxin signaling during lateral root and root meristem development.	tryptophan aminotransferase of Arabidopsis 1;(source:Araport11)
AT1G70570.1	protein_coding	anthranilate phosphoribosyltransferase, putative		anthranilate phosphoribosyltransferase;(source:Araport11)
AT1G70600.1	protein_coding	Ribosomal protein L18e/L15 superfamily protein		Ribosomal protein L18e/L15 superfamily protein;(source:Araport11)
AT1G67210.1	protein_coding	Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein		Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT1G67220.1	protein_coding	histone acetyltransferase of the CBP family 2		histone acetyltransferase of the CBP family 2;(source:Araport11)
AT1G32415.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G32310.1	protein_coding		Encodes a plant-specific negative regulator of the APC/C complex. It is expressed during embryogenesis and early plant development and plays a key role in organ size control. Mutants are defective in mitosis I of pollen development, resulting in pollen without sperm nuclei.	valine-tRNA ligase;(source:Araport11)
AT1G32375.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G51390.1	protein_coding	NFU domain protein 5	Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU4 than to NFU1,2, and 3. Targeted to the mitochondrion. The mRNA is cell-to-cell mobile.	NFU domain protein 5;(source:Araport11)
AT1G80480.1	protein_coding	plastid transcriptionally active 17		plastid transcriptionally active 17;(source:Araport11)
AT1G80550.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G80470.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G80245.1	protein_coding	Spc97 / Spc98 family of spindle pole body (SBP) component		Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT1G80540.1	protein_coding			envelope glycoprotein B;(source:Araport11)
AT1G80560.1	protein_coding	isopropylmalate dehydrogenase 2	The AtIMD2 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids. The mRNA is cell-to-cell mobile.	isopropylmalate dehydrogenase 2;(source:Araport11)
AT1G80460.1	protein_coding	Actin-like ATPase superfamily protein	Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.	Actin-like ATPase superfamily protein;(source:Araport11)
AT1G80600.1	protein_coding	HOPW1-1-interacting 1	Encodes HopW1-1-Interacting protein 1 (WIN1).  Interacts with the P. syringae effector HopW1-1.  WIN1 is a putative acetylornithine transaminase.  Modulates plant defenses against bacteria.  Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320). Mediates red-light inhibition of seed germination.	HOPW1-1-interacting 1;(source:Araport11)
AT1G80610.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G80440.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	Encodes a member of a family of F-box proteins, called the KISS ME DEADLY (KMD) family, that targets type-B ARR proteins for degradation and is involved in the negative regulation of the cytokinin response. Also named as KFB20, a member of a group of Kelch repeat F-box proteins that negatively regulate phenylpropanoid biosynthesis by targeting the phenypropanoid biosynthesis enzyme phenylalanine ammonia-lyase. The mRNA is cell-to-cell mobile.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G80530.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G80450.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT1G80520.1	protein_coding	Sterile alpha motif (SAM) domain-containing protein		Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT1G80510.1	protein_coding	Transmembrane amino acid transporter family protein	Encodes a close relative of the amino acid transporter ANT1 (AT3G11900).	Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G80590.1	protein_coding	WRKY DNA-binding protein 66	member of WRKY Transcription Factor; Group III	WRKY DNA-binding protein 66;(source:Araport11)
AT1G80420.1	protein_coding	BRCT domain-containing DNA repair protein	Encodes a component of plant break excision repair and functions at several stages during active DNA demethylation in Arabidopsis.	BRCT domain-containing DNA repair protein;(source:Araport11)
AT1G80580.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G80500.1	protein_coding	SNARE-like superfamily protein	Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	SNARE-like superfamily protein;(source:Araport11)
AT1G80570.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT1G80490.1	protein_coding	TOPLESS-related 1		TOPLESS-related 1;(source:Araport11)
AT1G80410.1	protein_coding	tetratricopeptide repeat (TPR)-containing protein	Encodes the catalytic subunit of a N-terminal acetyltransferase.	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT1G20550.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G20640.1	protein_coding	Plant regulator RWP-RK family protein		Plant regulator RWP-RK family protein;(source:Araport11)
AT1G20650.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G20570.1	protein_coding	Spc97 / Spc98 family of spindle pole body (SBP) component		Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT1G20610.1	protein_coding	Cyclin B2;3		Cyclin B2;(source:Araport11)
AT1G20575.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Encodes the catalytic core of the dolichol phosphate mannase synthase (DPMS) complex.  It is not active on its own but requires the presence of DPMS2 and DPMS3 for full activity. It is localized in the ER and mediates isoprenyl-linked glycan biogenesis, in&#64258;uences development, stress response, and ammonium hypersensitivity.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT1G23570.1	protein_coding	Domain of unknown function (DUF220)		hypothetical protein (DUF220);(source:Araport11)
AT1G01225.1	protein_coding	NC domain-containing protein-related		NC domain-containing protein-like protein;(source:Araport11)
AT1G55170.1	protein_coding			DNA double-strand break repair protein;(source:Araport11)
AT1G55265.1	protein_coding	Protein of unknown function, DUF538		DUF538 family protein, putative (Protein of unknown function, DUF538);(source:Araport11)
AT1G14185.1	protein_coding	Glucose-methanol-choline (GMC) oxidoreductase family protein		Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT1G34355.1	protein_coding	forkhead-associated (FHA) domain-containing protein 	Encodes PS1 (Parallel Spindle 1). Mutations in PS1 lead to diploid male spores, diploid pollen grains, and spontaneous triploid plants in the next generation. Female meiosis is not affected in the mutants.	forkhead-associated (FHA) domain-containing protein;(source:Araport11)
AT1G51010.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G60830.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G47200.1	protein_coding	WPP domain protein 2	WPP family members contains an NE targeting domain. This domain, called the WPP domain  after a highly conserved Trp-Pro-Pro motif, is necessary  for NE targeting of WPP1. RNAi suppression of WPP2 resulted in reduced mitotic activity.	WPP domain protein 2;(source:Araport11)
AT1G62045.1	protein_coding			ankyrin repeat protein;(source:Araport11)
AT1G53035.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G52940.1	protein_coding	purple acid phosphatase 5		purple acid phosphatase 5;(source:Araport11)
AT1G52950.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G52960.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1);(source:TAIR10)
AT1G52970.1	protein_coding	downregulated in DIF1 11		downregulated in DIF1 11;(source:Araport11)
AT1G52980.1	protein_coding	GTP-binding family protein	Encodes a GTPase that belongs to the subfamily of YlqF/YawG GTPases.  Functions in Pre-60S ribosomal subunit maturation. The mRNA is cell-to-cell mobile.	GTP-binding family protein;(source:Araport11)
AT1G53170.1	protein_coding	ethylene response factor 8	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-8). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	ethylene response factor 8;(source:Araport11)
AT1G53165.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G44075.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G78815.1	protein_coding	Protein of unknown function (DUF640)		LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
AT1G78895.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT1G63210.1	protein_coding	Transcription elongation factor Spt6	SPT6L encodes a putative WG/GW-repeat  protein involved in the regulation of apical-basal polarity of embryo	Transcription elongation factor Spt6;(source:Araport11)
AT1G06225.1	protein_coding	CLAVATA3/ESR-RELATED 3	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 3;(source:Araport11)
AT1G17990.1	protein_coding	FMN-linked oxidoreductases superfamily protein		FMN-linked oxidoreductases superfamily protein;(source:Araport11)
AT1G18000.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G10522.1	protein_coding		Encodes PRIN2 (plastid redox insensitive 2). PRIN2 mutants are impaired in PEP (plastid-encoded RNA polymerase) activity and high light-dependent plastid redox signalling to the nucleus.	Serine/Threonine-kinase;(source:Araport11)
AT1G10585.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G66560.1	protein_coding	WRKY DNA-binding protein 64	member of WRKY Transcription Factor; Group III	WRKY DNA-binding protein 64;(source:Araport11)
AT1G66670.1	protein_coding	CLP protease proteolytic subunit 3	One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp).  The name reflects nomenclature described in Adam et. al (2001).	CLP protease proteolytic subunit 3;(source:Araport11)
AT1G66660.1	protein_coding	Protein with RING/U-box and TRAF-like domains		Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT1G09155.1	protein_coding	phloem protein 2-B15		phloem protein 2-B15;(source:Araport11)
AT1G51915.1	protein_coding	cryptdin protein-related		cryptdin protein-like protein;(source:Araport11)
AT1G02475.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G36600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.9e-21 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT1G36756.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G36763.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05560.1);(source:TAIR10)
AT1G10700.1	protein_coding	phosphoribosyl pyrophosphate (PRPP) synthase 3	Encodes a P-independent phosphoribosyl pyrophosphate (PRPP) synthase.	phosphoribosyl pyrophosphate (PRPP) synthase 3;(source:Araport11)
AT1G10710.1	protein_coding	poor homologous synapsis 1	Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007), but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene. PHS1 regulates recombination and pairing of homologous chromosomes during meiotic prophase by controlling transport of RAD50 from cytoplasm to the nucleus.	poor homologous synapsis 1;(source:Araport11)
AT1G10780.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G10790.1	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G10800.1	protein_coding			voltage-gated hydrogen channel-like protein;(source:Araport11)
AT1G10770.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein	Encodes a putative pectin methylesterase/invertase inhibitor. Anti-sense reduction of this gene's transcript results in pollen tube growth retardation and then partial male sterility and reduced seed set.	Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G22275.1	protein_coding	Myosin heavy chain-related protein	One of two nearly identical proteins (ZYP1a) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.	Myosin heavy chain-related protein;(source:Araport11)
AT1G33265.1	protein_coding	Transmembrane proteins 14C		Transmembrane proteins 14C;(source:Araport11)
AT1G69935.1	protein_coding	short hypocotyl in white light1	Encodes a nuclear localized serine-arginine-aspartate-rich protein that acts as a negative regulator of photomorphogenesis.	short hypocotyl in white light1;(source:Araport11)
AT1G30795.1	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT1G30825.1	protein_coding	Arp2/3 complex, 34 kD subunit p34-Arc	Involved in trichome maturation. mutant displays enlarged trichomes	Arp2/3 complex, 34 kD subunit p34-Arc;(source:Araport11)
AT1G53885.1	protein_coding	Protein of unknown function (DUF581)		linoleate 9S-lipoxygenase-4 protein, putative (DUF581);(source:Araport11)
AT1G49900.1	protein_coding	C2H2 type zinc finger transcription factor family		C2H2 type zinc finger transcription factor family;(source:Araport11)
AT1G49890.1	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT1G73177.1	protein_coding	bonsai	The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.	bonsai;(source:Araport11)
AT1G73320.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G73140.1	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).The dwarf phenotype can only be seen in tbl3 tbl31 esk1 triple mutant. tbl3 and tbl31 are specifically involved in 3-O-monoacetylation of xylan.	trichome birefringence-like protein (DUF828);(source:Araport11)
AT1G73150.1	protein_coding	global transcription factor group E3	Bromodomain and extra terminal domain family protein. Binds to acetyl-histone H3. Binding is reduced when GTE3 is SUMOylated by SIZ1.	global transcription factor group E3;(source:Araport11)
AT1G31335.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G67470.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G04645.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G01725.1	protein_coding			adenylosuccinate synthetase;(source:Araport11)
AT1G29950.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G05805.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G36040.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-34 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT1G36050.1	protein_coding	Endoplasmic reticulum vesicle transporter protein		Endoplasmic reticulum vesicle transporter protein;(source:Araport11)
AT1G36070.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G36035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to gb|AAO73523.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT1G36060.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.Overexpression results in increased drought tolerance and vitrified leaves. Binds to DRE/GCC promoter elements and activates expression of aquaporin genes AtTIP1;1, AtTIP2;3, and AtPIP2;2.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G68185.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT1G54830.1	protein_coding	nuclear factor Y, subunit C3	Encodes a NUCLEAR FACTOR-Y C (NF-YC) homologue NF-YC3. NF-YC3., NF-YC4 and NF-YC9 redundantly modulate GA- and ABA-mediated seed germination.	nuclear factor Y, subunit C3;(source:Araport11)
AT1G54860.1	protein_coding	Glycoprotein membrane precursor GPI-anchored		Glycoprotein membrane precursor GPI-anchored;(source:Araport11)
AT1G54850.1	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G21065.1	protein_coding			secondary thiamine-phosphate synthase enzyme;(source:Araport11)
AT1G76270.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G76290.1	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G76340.1	protein_coding	golgi nucleotide sugar transporter 3	Encodes a nucleotide-sugar transporter. It is  is likely the primary Golgi GDP-L-galactose transporter, and provides GDP-L-galactose for RG-II biosynthesis. Knockout lines are lethal. RNAi suppressor lines were used for analysis. GDP-L-Galactose transport was affected. This process was required for pectic RG-II biosynthesis.	golgi nucleotide sugar transporter 3;(source:Araport11)
AT1G76185.1	protein_coding			NADH-ubiquinone oxidoreductase chain;(source:Araport11)
AT1G67865.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G26795.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G26665.1	protein_coding	Mediator complex, subunit Med10		Mediator complex, subunit Med10;(source:Araport11)
AT1G61566.1	protein_coding	ralf-like 9	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 9;(source:Araport11)
AT1G61563.1	protein_coding	ralf-like 8	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 8;(source:Araport11)
AT1G61660.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a transcriptional activator that regulates the expression of genes by binding to their GCG- or E-boxes to mediate physiological responses, including proline biosynthesis and ROS scavenging pathways, to enhance stress tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G61650.1	pseudogene			pseudogene of chromomethylase 1;(source:Araport11)
AT1G61667.1	protein_coding	Protein of unknown function, DUF538		serine protease, putative (Protein of unknown function, DUF538);(source:Araport11)
AT1G05385.1	protein_coding	photosystem II 11 kDa protein-related	Encodes a Psb27 homolog involved in photosystem II biogenesis.	photosystem II 11 kDa protein-like protein;(source:Araport11)
AT1G23205.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G23210.1	protein_coding	glycosyl hydrolase 9B6		glycosyl hydrolase 9B6;(source:Araport11)
AT1G23220.1	protein_coding	Dynein light chain type 1 family protein		Dynein light chain type 1 family protein;(source:Araport11)
AT1G66430.1	protein_coding	pfkB-like carbohydrate kinase family protein	Encodes one of the several Arabidopsis fructokinases. Nomenclature according to Riggs 2017 has been adopted for the family by the community (personal communication, Boernke, Callis, Granot, Boernke, and Smeekens). Important for seed oil accumulation and vascular development.	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT1G68450.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT1G30200.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G30135.1	protein_coding	jasmonate-zim-domain protein 8		jasmonate-zim-domain protein 8;(source:Araport11)
AT1G30180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.5e-115 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G36830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.9e-38 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT1G53645.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G75780.1	protein_coding	tubulin beta-1 chain	beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses	tubulin beta-1 chain;(source:Araport11)
AT1G75790.1	protein_coding	SKU5  similar 18		SKU5 similar 18;(source:Araport11)
AT1G66930.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G30755.1	protein_coding	Protein of unknown function (DUF668)		elongation factor G, putative (DUF668);(source:Araport11)
AT1G77655.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G02440.1	protein_coding	ADP-ribosylation factor D1A	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.	ADP-ribosylation factor D1A;(source:Araport11)
AT1G02305.1	protein_coding	Cysteine proteinases superfamily protein	Encodes a capase involved in stress induced cell death.	Cysteine proteinases superfamily protein;(source:Araport11)
AT1G02460.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT1G02450.1	protein_coding	NIM1-interacting 1	NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA  factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.	NIM1-interacting 1;(source:Araport11)
AT1G47880.1	pseudogene			pseudogene of receptor like protein 6;(source:Araport11)
AT1G47885.1	protein_coding	Ribonuclease inhibitor		Ribonuclease inhibitor;(source:Araport11)
AT1G56145.1	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G55990.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT1G68880.1	protein_coding	basic leucine-zipper 8		basic leucine-zipper 8;(source:Araport11)
AT1G68870.1	protein_coding	SOB five-like 2	AtSOFL1 acts redundantly with AtSOFL2 as positive regulator of cytokinin levels and cytokinin-mediated development.	SOB five-like 2;(source:Araport11)
AT1G68875.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G68820.1	protein_coding	Transmembrane Fragile-X-F-associated protein	Putative C3HC4 zinc-finger ubiquitin E3 ligase, negative regulator in ABA and drought stress response.	Transmembrane Fragile-X-F-associated protein;(source:Araport11)
AT1G55160.1	protein_coding			WAS/WASL-interacting family protein;(source:Araport11)
AT1G60985.1	protein_coding	SCR-like 6	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 6;(source:Araport11)
AT1G61090.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G61065.1	protein_coding	Protein of unknown function (DUF1218)		1,3-beta-glucan synthase component (DUF1218);(source:Araport11)
AT1G31490.1	protein_coding	HXXXD-type acyl-transferase family protein		HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G31600.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G31520.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G31530.1	protein_coding	DNAse I-like superfamily protein	Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT1G31510.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G31580.1	protein_coding	ECS1	Encodes cell wall protein.  ECS1 is not a Xcc750 resistance gene, but the genetic data indicate that ECS1 is linked to a locus influencing resistance to Xcc750. The mRNA is cell-to-cell mobile.	ECS1;(source:Araport11)
AT1G31500.1	protein_coding	DNAse I-like superfamily protein	HESP identified based on similarity to nocturnins and presence circadian regulatory elements in the promoter. It functions as a Mg(II) dependent poly(A) exoribonuclease.It is under circadian regulation and expressed at night. Knockdowns affect the regulation of circadian genes CCA1 and TOC1.	DNAse I-like superfamily protein;(source:Araport11)
AT1G65295.1	protein_coding			ubiquitin carboxyl-terminal hydrolase;(source:Araport11)
AT1G57550.1	protein_coding	Low temperature and salt responsive protein family		Low temperature and salt responsive protein family;(source:Araport11)
AT1G73325.1	protein_coding	Kunitz family trypsin and protease inhibitor protein		Kunitz family trypsin and protease inhibitor protein;(source:Araport11)
AT1G33055.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G72320.1	protein_coding	pumilio 23	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 23;(source:Araport11)
AT1G72130.1	protein_coding	Major facilitator superfamily protein	Tonoplast localized pH dependent, low affinity nitrogen transporter.In shoots,  expressed in leaf veins and mesophyll. In roots, GUS activity was detected in root vascular stele. More highly expressed in roots.	Major facilitator superfamily protein;(source:Araport11)
AT1G72310.1	protein_coding	RING/U-box superfamily protein	Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3).	RING/U-box superfamily protein;(source:Araport11)
AT1G72175.1	protein_coding	RING/U-box protein with domain of unknown function (DUF 1232)		E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232);(source:Araport11)
AT1G05370.1	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G05205.1	protein_coding			hexokinase-1 protein;(source:Araport11)
AT1G78995.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G27520.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G27390.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT2G27380.1	protein_coding	extensin proline-rich 1	Encodes an extensin like gene involved in seed germination.	extensin proline-rich 1;(source:Araport11)
AT2G27370.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT2G27360.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G27550.1	protein_coding	centroradialis	encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.  It acts non-cell autonomously to inhibit floral initiation.	centroradiali;(source:Araport11)
AT2G27410.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein, putative (DUF313);(source:Araport11)
AT2G27530.1	protein_coding	Ribosomal protein L1p/L10e family	Encodes ribosomal protein L10aP. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.	Ribosomal protein L1p/L10e family;(source:Araport11)
AT2G27540.1	protein_coding			F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G12650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.3e-38 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G46375.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G26950.1	protein_coding	myb domain protein 104	Member of the R2R3 factor gene family.	myb domain protein 104;(source:Araport11)
AT2G27330.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G27340.1	protein_coding	N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein		N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein;(source:Araport11)
AT2G27375.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09490.1);(source:TAIR10)
AT2G27395.1	pseudogene		pseudogene of cysteine protease-related	pseudogene of Cysteine proteinases superfamily protein;(source:Araport11)
AT2G27285.1	protein_coding	Coiled-coil domain-containing protein 55 (DUF2040)		nuclear speckle splicing regulatory-like protein (DUF2040);(source:Araport11)
AT2G46505.1	protein_coding	succinate dehydrogenase subunit 4	Encodes succinate dehydrogenase ,a component of  mitochondrial respiratory complex II. Nuclear encoded gene which is imported into the mitochondrion.	succinate dehydrogenase subunit 4;(source:Araport11)
AT2G25390.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G25070.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT2G25060.1	protein_coding	early nodulin-like protein 14		early nodulin-like protein 14;(source:Araport11)
AT2G25220.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G25200.1	protein_coding	Plant protein of unknown function (DUF868)		hypothetical protein (DUF868);(source:Araport11)
AT2G25190.1	protein_coding	PPPDE putative thiol peptidase family protein		PPPDE putative thiol peptidase family protein;(source:Araport11)
AT2G38790.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G13860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.4e-275 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G13830.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.4e-283 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G13820.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G13840.1	protein_coding	Polymerase/histidinol phosphatase-like		Polymerase/histidinol phosphatase-like protein;(source:Araport11)
AT2G37730.1	protein_coding	Protein of unknown function (DUF604)		glycosyltransferase (DUF604);(source:Araport11)
AT2G37585.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	Encodes GlcAT14C. Has glucuronosyltransferase activity adding glucuronic acid residues to beta-1,3- and beta-1,6-linked galactans.	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT2G34315.1	protein_coding	Avirulence induced gene (AIG1) family protein		avirulence induced family protein;(source:Araport11)
AT2G34440.1	protein_coding	AGAMOUS-like 29	AGL29 MADS box gene.	AGAMOUS-like 29;(source:Araport11)
AT2G34500.1	protein_coding	cytochrome P450, family 710, subfamily A, polypeptide 1	Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of &beta;-sitosterol to stigmasterol, but not that of 24-<i>epi</i>-campesterol to brassicasterol (unlike CYP710A2).	cytochrome P450, family 710, subfamily A, polypeptide 1;(source:Araport11)
AT2G34490.1	protein_coding	cytochrome P450, family 710, subfamily A, polypeptide 2	Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-<i>epi</i>-campesterol and &beta;-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH.	cytochrome P450, family 710, subfamily A, polypeptide 2;(source:Araport11)
AT2G34410.1	protein_coding	O-acetyltransferase family protein	Encodes a homolog of the protein Cas1p known to be involved in polysaccharide O-acetylation in Cryptococcus neoformans.  Has high similarity to RWA2 whose mutant displays reduced acetylation. The protein is expressed in the Golgi and is involved in the acetylation of xylan during secondary wall biosynthesis.	O-acetyltransferase family protein;(source:Araport11)
AT2G34400.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT2G34450.1	protein_coding	HMG-box (high mobility group) DNA-binding family protein		HMG-box (high mobility group) DNA-binding family protein;(source:Araport11)
AT2G34470.1	protein_coding	urease accessory protein G	Encodes a urease accessory protein which is essential for the activation of plant urease.	urease accessory protein G;(source:Araport11)
AT2G34430.1	protein_coding	light-harvesting chlorophyll-protein complex II subunit B1	Photosystem II type I chlorophyll            a/b-binding protein The mRNA is cell-to-cell mobile.	light-harvesting chlorophyll-protein complex II subunit B1;(source:Araport11)
AT2G34390.1	protein_coding	NOD26-like intrinsic protein 2;1	aquaporin NIP2.1	NOD26-like intrinsic protein 2;(source:Araport11)
AT2G34380.1	protein_coding	Putative adipose-regulatory protein (Seipin)	Membrane protein involved in lipid droplet biogenesis primarily in pollen.	Putative adipose-regulatory protein (Seipin);(source:Araport11)
AT2G34420.1	protein_coding	photosystem II light harvesting complex gene B1B2	Photosystem II type I chlorophyll            a/b-binding protein	photosystem II light harvesting complex protein B1B2;(source:Araport11)
AT2G34460.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G34480.1	protein_coding	Ribosomal protein L18ae/LX family protein	Encodes a nuclear localized member of the ribosomal L18ae/LX  protein family.  Loss of function mutations show reduced transmission through the gametophytes and embryo lethality.	Ribosomal protein L18ae/LX family protein;(source:Araport11)
AT2G43080.1	protein_coding	P4H isoform 1	Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline),the collagen model peptide (Pro-Pro-Gly)10 and  other proline rich peptides.	P4H isoform 1;(source:Araport11)
AT2G02060.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT2G22570.1	protein_coding	nicotinamidase 1	encodes a nicotinamidase that converts nicotinamide into nicotinic acid. As such the encoded enzyme is involved in the pyridine nucleotide salvage pathway which may be connected to the de novo NAD biosynthesis through the ABA signaling pathway.	nicotinamidase 1;(source:Araport11)
AT2G22475.1	protein_coding	GRAM domain family protein	Encodes GL2-expression modulator (GEM).  Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells.  GEM interacts with CDT1, a DNA replication protein and TTG1 (TRANSPARENT TESTA GLABRA1), a WD40-repeat protein involved in GL2-dependent cell fate decision.  GEM seems to participate in the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC (CAPRICE) promoters.	GRAM domain family protein;(source:Araport11)
AT2G22425.1	protein_coding	Microsomal signal peptidase 12 kDa subunit (SPC12)		Microsomal signal peptidase 12 kDa subunit (SPC12);(source:Araport11)
AT2G46860.1	protein_coding	pyrophosphorylase 3	Encodes a protein that might have inorganic pyrophosphatase activity.	pyrophosphorylase 3;(source:Araport11)
AT2G46880.1	protein_coding	purple acid phosphatase 14		purple acid phosphatase 14;(source:Araport11)
AT2G46915.1	protein_coding	Protein of unknown function (DUF3754)		DUF3754 family protein, putative (DUF3754);(source:Araport11)
AT2G47115.1	protein_coding			protein rolling protein;(source:Araport11)
AT2G42490.1	protein_coding	Copper amine oxidase family protein	Peroxisome-localized copper amine oxidase involved in lateral root formation.	Copper amine oxidase family protein;(source:Araport11)
AT2G15130.1	protein_coding	Plant basic secretory protein (BSP) family protein		Plant basic secretory protein (BSP) family protein;(source:Araport11)
AT2G27600.1	protein_coding	AAA-type ATPase family protein	Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog.  Localized to the cytoplasm and to multivesicular endosomes.  Involved in multivesicular endosome function. The mRNA is cell-to-cell mobile.	AAA-type ATPase family protein;(source:Araport11)
AT2G27580.1	protein_coding	A20/AN1-like zinc finger family protein	Regulated by heat shock.	A20/AN1-like zinc finger family protein;(source:Araport11)
AT2G27590.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G27570.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G27775.1	protein_coding			PPR containing protein;(source:Araport11)
AT2G44810.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Mutant has defects in anther dehiscence, pollen maturation, and flower opening.  The DAD1 protein is a chloroplastic phospholipase A1 that catalyzes the initial step of jasmonic acid biosynthesis.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G44745.1	protein_coding	WRKY family transcription factor		WRKY family transcription factor;(source:Araport11)
AT2G31180.1	protein_coding	myb domain protein 14	Member of the R2R3 factor gene family.	myb domain protein 14;(source:Araport11)
AT2G31340.1	protein_coding	embryo defective 1381		embryo defective 1381;(source:Araport11)
AT2G31305.1	protein_coding	inhibitor-3	Encodes inhibitor-3 (Inh3), a regulatory subunit of protein phosphatase 1 (PP1).  Inh3 inhibits the phosphatase activity of the PP1 catalytic subunit (PP1c). Biochemical analyses demonstrate that Inh3 binds to PP1c via the RVxF motif of Inh3, a consensus PP1c-binding sequence both in vitro and in vivo.	inhibitor-3;(source:Araport11)
AT2G38185.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G38300.1	protein_coding	myb-like HTH transcriptional regulator family protein		myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT2G39705.1	protein_coding	ROTUNDIFOLIA like 8		ROTUNDIFOLIA like 8;(source:Araport11)
AT2G45700.1	protein_coding	sterile alpha motif (SAM) domain-containing protein		sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT2G13810.1	protein_coding	AGD2-like defense response protein 1	ALD1 is a L-lysine alpha-aminotransferase. It is part of the pipecolic acid biosynthetic pathway, where it catalyzes the biochemical conversion of lysine to epsilon-amino-alpha-ketocaproic acid (KAC) which is subject to subsequent transamination, cyclization and isomerization to form 2,3-dehydropipecolic acid.	AGD2-like defense response protein 1;(source:Araport11)
AT2G13920.1	pseudogene			pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G43570.1	protein_coding	chitinase, putative		chitinase;(source:Araport11)
AT2G06255.1	protein_coding	ELF4-like 3	DUF1313  domain containing protein.	ELF4-like 3;(source:Araport11)
AT2G46870.1	protein_coding	AP2/B3-like transcriptional factor family protein	Member of the RAV family  of DNA binding proteins. Contains B3 domain. Recognizes 5'-CACCTG-'3 motif.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT2G46735.1	protein_coding			death domain associated protein;(source:Araport11)
AT2G18915.1	protein_coding	LOV KELCH protein 2	encodes a member of F-box proteins that includes two other proteins in Arabidopsis (ZTL and FKF1). These proteins contain a unique structure containing a PAS domain at their N-terminus, an F-box motif, and 6 kelch repeats at their C-terminus. Overexpression results in arrhythmic phenotypes for a number of circadian clock outputs in both constant light and constant darkness, long hypocotyls under multiple fluences of both red and blue light, and a loss of photoperiodic control of flowering time. Although this the expression of this gene itself is not regulated by circadian clock, it physically interacts with Dof transcription factors that are transcriptionally regulated by circadian rhythm. LKP2 interacts with Di19, CO/COL family proteins.	LOV KELCH protein 2;(source:Araport11)
AT2G04900.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G31725.1	protein_coding	Eukaryotic protein of unknown function (DUF842)		FAM136A-like protein (DUF842);(source:Araport11)
AT2G31945.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G23150.1	protein_coding	natural resistance-associated macrophage protein 3	Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.	natural resistance-associated macrophage protein 3;(source:Araport11)
AT2G23140.1	protein_coding	RING/U-box superfamily protein with ARM repeat domain.	PUB4 encodes a functional ubiquitin-protein ligase. The gene is expressed in most plant tissues and the protein localizes to the nucleus. PUB4 has been recovered as a second site suppressor from several different genetic screens and from these, it has been inferred to have roles in regulating root development, pollen tapetum development and ROS induced chloroplast degredation.	RING/U-box superfamily protein with ARM repeat domain-containing protein;(source:Araport11)
AT2G29920.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G29995.1	protein_coding			PSY3-like protein;(source:Araport11)
AT2G12083.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.8e-75 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G12066.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to mutator-like transposase, putative;(source:TAIR10)
AT2G20585.1	protein_coding	nuclear fusion defective 6		nuclear fusion defective 6;(source:Araport11)
AT2G20595.1	protein_coding		highly expressed in the female gametophyte  central cell and expressed at low levels in the egg and synergids	plant thionin family protein;(source:Araport11)
AT2G28085.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT2G18630.1	protein_coding	Protein of unknown function (DUF677)		transmembrane protein, putative (DUF677);(source:Araport11)
AT2G18640.1	protein_coding	geranylgeranyl pyrophosphate synthase 4	Encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase	geranylgeranyl pyrophosphate synthase 4;(source:Araport11)
AT2G32765.1	protein_coding	small ubiquitinrelated modifier 5	Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.	small ubiquitinrelated modifier 5;(source:Araport11)
AT2G23680.1	protein_coding	Cold acclimation protein WCOR413 family		Cold acclimation protein WCOR413 family;(source:Araport11)
AT2G23670.1	protein_coding	homolog of Synechocystis YCF37		homolog of Synechocystis YCF37;(source:Araport11)
AT2G23640.1	protein_coding	Reticulan like protein B13	Encodes RTNLB13, a reticulon protein integral to the endoplasmic reticulum (ER) membrane that have the ability to shape the ER into tubules.	Reticulan like protein B13;(source:Araport11)
AT2G23630.1	protein_coding	SKU5  similar 16		SKU5 similar 16;(source:Araport11)
AT2G14850.1	protein_coding			transcriptional regulator of RNA polII, SAGA, subunit;(source:Araport11)
AT2G14835.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G21185.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G21195.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G15765.1	pseudogene			pseudogene of F-box/RNI-like superfamily protein;(source:Araport11)
AT2G15470.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT2G24765.1	protein_coding	ADP-ribosylation factor 3	GTPase required for Golgi targeting of GRIP domain  proteins. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner	ADP-ribosylation factor 3;(source:Araport11)
AT2G24790.1	protein_coding	CONSTANS-like 3	Positive  regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently  of COP1 and also function as a daylength-sensitive regulator of shoot branching. The mRNA is cell-to-cell mobile.	CONSTANS-like 3;(source:Araport11)
AT2G24762.1	protein_coding	glutamine dumper 4	Encodes a member of the GDU (glutamine dumper) family proteins involved in amino acid export: At4g31730 (GDU1), At4g25760 (GDU2), At5g57685 (GDU3), At2g24762 (GDU4), At5g24920 (GDU5), At3g30725 (GDU6) and At5g38770 (GDU7).	glutamine dumper 4;(source:Araport11)
AT2G24780.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G24255.1	protein_coding			LOW protein: F-box/kelch-repeat protein;(source:Araport11)
AT2G19385.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT2G23660.1	protein_coding	LOB domain-containing protein 10		LOB domain-containing protein 10;(source:Araport11)
AT2G04845.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G04795.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G04910.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT2G04890.1	protein_coding	SCARECROW-like 21	Encodes a scarecrow-like protein (SCL21). Member of GRAS gene family.	SCARECROW-like 21;(source:Araport11)
AT2G04920.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G04880.1	protein_coding	zinc-dependent activator protein-1	Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes.  WRKY1 is involved in the salicylic acid signaling pathway.  The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1. The mRNA is cell-to-cell mobile.	zinc-dependent activator protein-1;(source:Araport11)
AT2G04675.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G21690.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G21710.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT2G21655.1	protein_coding	Protein of unknown function (DUF784)		ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT2G36380.1	protein_coding	pleiotropic drug resistance 6		pleiotropic drug resistance 6;(source:Araport11)
AT2G36180.1	protein_coding	EF hand calcium-binding protein family		EF hand calcium-binding protein family;(source:Araport11)
AT2G01610.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT2G11270.1	protein_coding	citrate synthase-related		citrate synthase-like protein;(source:Araport11)
AT2G21385.1	protein_coding		Encodes a chloroplast stroma localized protein that is found only in the green plant lineage. It is involved in assembly of the chloroplast ATP synthase complex.	hypothetical protein;(source:Araport11)
AT2G21540.1	protein_coding	SEC14-like 3		SEC14-like 3;(source:Araport11)
AT2G04032.1	protein_coding	zinc transporter 7 precursor		zinc transporter 7 precursor;(source:Araport11)
AT2G04035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to (GB:AC005508);(source:TAIR10)
AT2G25625.1	protein_coding			histone deacetylase-like protein;(source:Araport11)
AT2G25735.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G25740.1	protein_coding	ATP-dependent protease La (LON) domain protein		ATP-dependent protease La (LON) domain protein;(source:Araport11)
AT2G45710.1	protein_coding	Zinc-binding ribosomal protein family protein		Zinc-binding ribosomal protein family protein;(source:Araport11)
AT2G45720.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT2G33255.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G33250.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G20815.1	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT2G21045.1	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein		Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT2G06220.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, expressed protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287;(source:TAIR10)
AT2G06230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33230.1);(source:TAIR10)
AT2G44065.1	protein_coding	Ribosomal protein L2 family		Ribosomal protein L2 family;(source:Araport11)
AT2G29930.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT2G17033.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT2G17036.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box SKIP23-like protein (DUF295);(source:Araport11)
AT2G22040.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a homolog of LST8 (Lethal with Sec Thirteen 8/G protein b subunit-like (LST8/GbL).	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G22030.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G31040.1	protein_coding	ATP synthase protein I -related	Encodes an integral thylakoid protein that facilitates assembly of the membranous part of the chloroplast ATPase.	ATP synthase protein I-like protein;(source:Araport11)
AT2G30925.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G16005.1	protein_coding	MD-2-related lipid recognition domain-containing protein	ROSY1 protein contains a MD-2-related lipid-recognition domain. It is rapidly upregulated in response to gravistimulation.	MD-2-related lipid recognition domain-containing protein;(source:Araport11)
AT2G21250.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G21260.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G13910.1	pseudogene			pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G36080.1	protein_coding	AP2/B3-like transcriptional factor family protein	Encodes a plant-specific B3 DNA-binding domain transcription factor.  Has transcription repressor activity.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT2G36145.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G36190.1	protein_coding	cell wall invertase 4	cwINV4 appears to function as a cell wall-localized invertase (that can catalyze the hydrolysis of sucrose into fructose and glucose) based on the phenotype of cwinv4 mutants. cwINV4 transcripts are expressed at high levels in lateral and median nectaries and this enzyme plays an important role in nectar production.	cell wall invertase 4;(source:Araport11)
AT2G15695.1	protein_coding	Protein of unknown function DUF829, transmembrane 53		peptide methionine sulfoxide reductase (Protein of unknown function DUF829, transmembrane 53);(source:Araport11)
AT2G15760.1	protein_coding	Protein of unknown function (DUF1645)		calmodulin-binding protein (DUF1645);(source:Araport11)
AT2G15535.1	protein_coding	low-molecular-weight cysteine-rich 10		low-molecular-weight cysteine-rich 10;(source:Araport11)
AT2G43100.1	protein_coding	isopropylmalate isomerase 2		isopropylmalate isomerase 2;(source:Araport11)
AT2G43090.1	protein_coding	Aconitase/3-isopropylmalate dehydratase protein	One of three genes encoding the small subunit of isopropylmalate isomerase, a heterodimer consisting of a large and a small subunit.  A function in both leucine biosynthesis and the first cycle of Met chain elongation has been demonstrated for this subunit. The mRNA is cell-to-cell mobile.	Aconitase/3-isopropylmalate dehydratase protein;(source:Araport11)
AT2G42500.1	protein_coding	protein phosphatase 2A-3	Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].  ACR4 phosphorylates the PROTEIN PHOSPHATASE 2A-3 (PP2A-3) catalytic subunit of the PP2A phosphatase holoenzyme and PP2A dephosphorylates ACR4.	protein phosphatase 2A-3;(source:Araport11)
AT2G41705.1	protein_coding	camphor resistance CrcB family protein	Encodes a fluoride export protein.	camphor resistance CrcB family protein;(source:Araport11)
AT2G30640.1	transposable_element_gene		Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1), AT2G30640 (MUG2), AT1G06740 (MUG3), AT5G16505 (MUG4), AT3G06940 (MUG5), AT5G48965 (MUG6), AT3G05850 (MUG7) and AT5G34853 (MUG8).	transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.9e-53 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G30695.1	protein_coding			bacterial trigger factor;(source:Araport11)
AT2G06630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12120.1);(source:TAIR10)
AT2G06640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G20570.1	protein_coding	GBF's pro-rich region-interacting factor 1	Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.	GBFs pro-rich region-interacting factor 1;(source:Araport11)
AT2G20430.1	protein_coding	ROP-interactive CRIB motif-containing protein 6	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC7 and RIC8 (subfamily group II). Gene is expressed predominantly in inflorescence and flower tissue.	ROP-interactive CRIB motif-containing protein 6;(source:Araport11)
AT2G20515.1	protein_coding			pollen Ole e I family allergen protein;(source:Araport11)
AT2G44820.1	protein_coding			axoneme-associated protein MST101(2) protein;(source:Araport11)
AT2G17845.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G14600.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28250.1);(source:TAIR10)
AT2G14590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27606.1);(source:TAIR10)
AT2G06620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06700.1);(source:TAIR10)
AT2G06645.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G06820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09700.1);(source:TAIR10)
AT2G31085.1	protein_coding	CLAVATA3/ESR-RELATED 6	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. Can replace CLV3 function in vivo.	CLAVATA3/ESR-RELATED 6;(source:Araport11)
AT2G31170.1	protein_coding	Cysteinyl-tRNA synthetase, class Ia family protein	Encodes the cysteinyl t-RNA synthetase SYCO ARATH (SYCO), which is expressed and required in the central cell but not in the antipodals. SYCO, localized to the mitochondria, is necessary for mitochondrial cristae integrity.  Mutation of this gene affects the lifespan of adjacent accessory cells.	Cysteinyl-tRNA synthetase, class Ia family protein;(source:Araport11)
AT2G31050.1	protein_coding	Cupredoxin superfamily protein		Cupredoxin superfamily protein;(source:Araport11)
AT2G05820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 6.4e-71 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G05790.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT2G28590.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G28580.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT2G07681.1	protein_coding	Cytochrome C assembly protein		Cytochrome C assembly protein;(source:Araport11)
AT2G02840.1	protein_coding			nucleic acid/zinc ion-binding protein;(source:Araport11)
AT2G38465.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G28460.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G28355.1	protein_coding	low-molecular-weight cysteine-rich 5		low-molecular-weight cysteine-rich 5;(source:Araport11)
AT2G33735.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G33845.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G36885.1	protein_coding			translation initiation factor;(source:Araport11)
AT2G36835.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G43600.1	protein_coding	Chitinase family protein		Chitinase family protein;(source:Araport11)
AT2G43590.1	protein_coding	Chitinase family protein		Chitinase family protein;(source:Araport11)
AT2G43580.1	protein_coding	Chitinase family protein		Chitinase family protein;(source:Araport11)
AT2G43535.1	protein_coding	Scorpion toxin-like knottin superfamily protein	Encodes a defensin-like (DEFL) family protein.	Scorpion toxin-like knottin superfamily protein;(source:Araport11)
AT2G40935.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT2G23130.1	protein_coding	arabinogalactan protein 17	AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.	arabinogalactan protein 17;(source:Araport11)
AT2G35736.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G35635.1	protein_coding	ubiquitin 7	encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. The mRNA is cell-to-cell mobile.	ubiquitin 7;(source:Araport11)
AT2G35733.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G14095.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G25370.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G25380.1	pseudogene		pseudogene of zinc finger protein-related	pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT2G25360.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G25355.1	protein_coding	PNAS-3 related		PNAS-3-like protein;(source:Araport11)
AT2G04220.1	protein_coding	Plant protein of unknown function (DUF868)		DUF868 family protein (DUF868);(source:Araport11)
AT2G16595.1	protein_coding	Translocon-associated protein (TRAP), alpha subunit		Translocon-associated protein (TRAP), alpha subunit;(source:Araport11)
AT2G42110.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05755.1	protein_coding	Nodulin MtN21 /EamA-like transporter family protein	Nucleotide/sugar transporter family protein	Nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT2G32650.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT2G32660.1	protein_coding	receptor like protein 22		receptor like protein 22;(source:Araport11)
AT2G32640.1	protein_coding	Lycopene beta/epsilon cyclase protein	Encodes a lycopene beta cyclase that catalyzes the addition of beta-ionone end groups to the end of lycopene molecules.	Lycopene beta/epsilon cyclase protein;(source:Araport11)
AT2G41430.1	protein_coding	dehydration-induced protein (ERD15)	Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a  CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.	dehydration-induced protein (ERD15);(source:Araport11)
AT2G29880.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT2G30220.1	protein_coding	GDSL-like Lipase/Acylhydrolase family protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase family protein;(source:Araport11)
AT2G30240.1	protein_coding	Cation/hydrogen exchanger family protein	Encodes a plasma membrane localized potassium transporter.	Cation/hydrogen exchanger family protein;(source:Araport11)
AT2G30250.1	protein_coding	WRKY DNA-binding protein 25	member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.	WRKY DNA-binding protein 25;(source:Araport11)
AT2G17972.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G31500.1	protein_coding	calcium-dependent protein kinase 24	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 24;(source:Araport11)
AT2G23945.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT2G37220.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a chloroplast RNA binding protein.  A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G40435.1	protein_coding			transcription factor SCREAM-like protein;(source:Araport11)
AT2G40430.1	protein_coding		Encodes a homolog of yeast NOP53 that is an important regulator of cell division during organ growth.	Nop53 protein;(source:Araport11)
AT2G40475.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G47640.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT2G47630.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G47670.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein	PMEI6 pectin methylesterase inhibitor functions in establishing a patter of homogalacturonan methylesterification of seed coat cell wall proteins .	Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT2G18245.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G34555.1	protein_coding	gibberellin 2-oxidase 3	Encodes a gibberellin 2-oxidase that acts on C19 gibberellins to deactivate them.	gibberellin 2-oxidase 3;(source:Araport11)
AT2G34585.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G35585.1	protein_coding			cystic fibrosis transmembrane conductance regulator;(source:Araport11)
AT2G35605.1	protein_coding	SWIB/MDM2 domain superfamily protein		SWIB/MDM2 domain superfamily protein;(source:Araport11)
AT2G32460.1	protein_coding	myb domain protein 101	Member of the R2R3 factor gene family.	myb domain protein 101;(source:Araport11)
AT2G47180.1	protein_coding	galactinol synthase 1	GolS1 is a galactinol synthase that catalyzes the formation of galactinol from UDP-galactose and myo-inositol. GolS1 transcript levels rise in response to methyl viologen, an oxidative damage-inducing agent. Plants over-expressing GolS1 have increased tolerance to salt, chilling, and high-light stress.	galactinol synthase 1;(source:Araport11)
AT2G47170.1	protein_coding	Ras-related small GTP-binding family protein	Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. The mRNA is cell-to-cell mobile.	Ras-related small GTP-binding family protein;(source:Araport11)
AT2G46330.1	protein_coding	arabinogalactan protein 16	Encodes arabinogalactan protein (AGP16).	arabinogalactan protein 16;(source:Araport11)
AT2G46225.1	protein_coding	ABI-1-like 1	Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching.  One of four ABI-like proteins.	ABI-1-like 1;(source:Araport11)
AT2G40440.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain protein;(source:Araport11)
AT2G40960.1	protein_coding	Single-stranded nucleic acid binding R3H protein		Single-stranded nucleic acid binding R3H protein;(source:Araport11)
AT2G40970.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT2G35155.1	protein_coding	Trypsin family protein		Trypsin family protein;(source:Araport11)
AT2G35075.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G06925.1	protein_coding	Phospholipase A2 family protein	Encodes a secretory phospholipase A2 enzyme, which specifically hydrolyzes the sn-2 position of phospholipids. The enzyme has a preference towards linoleoyl acyl chain over palmitoyl acyl chain. It also has a slight preference for phosphatidylcholine over phosphatidylethanolamine.	Phospholipase A2 family protein;(source:Araport11)
AT2G07722.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G39725.1	protein_coding	LYR family of Fe/S cluster biogenesis protein		LYR family of Fe/S cluster biogenesis protein;(source:Araport11)
AT2G39795.1	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT2G30400.1	protein_coding	ovate family protein 2		ovate family protein 2;(source:Araport11)
AT2G30410.1	protein_coding	tubulin folding cofactor A (KIESEL)	mutant has embryo defect; enlarged embryo cells and endosperm nuclei; Tubulin Folding Cofactor A	tubulin folding cofactor A (KIESEL);(source:Araport11)
AT2G30420.1	protein_coding	Homeodomain-like superfamily protein	In a tandem repeat with AT2G30424 and AT2G30432	Homeodomain-like superfamily protein;(source:Araport11)
AT2G30630.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G06005.1	protein_coding	FRIGIDA interacting protein 1	Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060.  FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time.	FRIGIDA interacting protein 1;(source:Araport11)
AT2G40765.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G40810.1	protein_coding	homolog of yeast autophagy 18C		yeast autophagy-like protein;(source:Araport11)
AT2G38905.1	protein_coding	Low temperature and salt responsive protein family		Low temperature and salt responsive protein family;(source:Araport11)
AT2G02515.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G01600.1	protein_coding	ENTH/ANTH/VHS superfamily protein		ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT2G28700.1	protein_coding	AGAMOUS-like 46		AGAMOUS-like 46;(source:Araport11)
AT2G37770.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein	Encodes an NADPH-dependent aldo-keto reductase that can act on a wide variety of substrates in vitro including saturated and unsaturated aldehydes, steroids, and sugars. GFP-tagged AKR4C9 localizes to the chloroplast where it may play a role in detoxifying reactive carbonyl compounds that threaten to impair the photosynthetic process. Transcript levels for this gene are up-regulated in response to cold, salt, and drought stress.	NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G37720.1	protein_coding	TRICHOME BIREFRINGENCE-LIKE 15	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 15;(source:Araport11)
AT2G38080.1	protein_coding	Laccase/Diphenol oxidase family protein	LAC4 appears to have laccase activity based on enzyme assays performed using lac4 mutants. These mutants also have reduced levels of lignin. LAC4 is expressed in vascular bundles and fibers and likely contributes to lignin biosynthesis, and hence cell wall biosynthesis, there. lac4/irx12 mutants have a mild irregular xylem phenotype.	Laccase/Diphenol oxidase family protein;(source:Araport11)
AT2G37740.1	protein_coding	zinc-finger protein 10		zinc-finger protein 10;(source:Araport11)
AT2G37975.1	protein_coding	Yos1-like protein		Yos1-like protein;(source:Araport11)
AT2G37750.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G37760.1	protein_coding	NAD(P)-linked oxidoreductase superfamily protein	Encodes an NADPH-dependent aldo-keto reductase that can act on a wide variety of substrates in vitro including aliphatic and aromatic aldehydes and steroids. Transcript levels for this gene are up-regulated in response to cold, salt, and drought stress.	NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G30390.1	protein_coding	ferrochelatase 2	Encodes one of two ferrochelatase genes in Arabidopsis. Ferrochelatase is the terminal enzyme of heme biosynthesis.  FC-II is speculated to operate in photosynthetic cytochromes.	ferrochelatase 2;(source:Araport11)
AT2G30210.1	protein_coding	laccase 3	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	laccase 3;(source:Araport11)
AT2G30230.1	protein_coding			6,7-dimethyl-8-ribityllumazine synthase;(source:Araport11)
AT2G31730.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G31490.1	protein_coding			neuronal acetylcholine receptor subunit alpha-5;(source:Araport11)
AT2G26350.1	protein_coding	peroxin 10	Zinc-binding peroxisomal integral membrane protein (PEX10). Inserted directly from the cytosol into peroxisomes and is involved in importing proteins into the peroxisome. Required for embryogenesis.	peroxin 10;(source:Araport11)
AT2G26340.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G47860.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT2G48110.1	protein_coding	reduced epidermal fluorescence 4	Encodes a novel protein of unknown function with homologs in non-seed plants. Sequence analysis predicts membrane spanning domains and a putative protein-protein interaction domain. Semi-dominant mutations display defects in phenylpropanoid accumulation suggesting a role in phenylpropanoid metabolism.  It has been shown to physically associate with the conserved transcriptional coregulatory complex, Mediator, and is involved in the regulation of phenylpropanoid homeostasis. Required for expression of some dark-upregulated genes.	reduced epidermal fluorescence 4;(source:Araport11)
AT3G05950.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT3G05930.1	protein_coding	germin-like protein 8	germin-like protein (GLP8)	germin-like protein 8;(source:Araport11)
AT3G05890.1	protein_coding	Low temperature and salt responsive protein family		Low temperature and salt responsive protein family;(source:Araport11)
AT3G05920.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G11350.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G11120.1	protein_coding	Ribosomal protein L41 family		Ribosomal protein L41 family;(source:Araport11)
AT3G11370.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G11090.1	protein_coding	LOB domain-containing protein 21		LOB domain-containing protein 21;(source:Araport11)
AT3G11200.1	protein_coding	alfin-like 2	Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 2;(source:Araport11)
AT3G11080.1	protein_coding	receptor like protein 35		receptor like protein 35;(source:Araport11)
AT3G11070.1	protein_coding	Outer membrane OMP85 family protein		Outer membrane OMP85 family protein;(source:Araport11)
AT3G11180.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	One of 4 paralogs encoding a 2-oxoglutarate/Fe(II)-dependent oxygenases  that hydroxylates JA to 12-OH-JA.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G11150.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G11130.1	protein_coding	Clathrin, heavy chain	CHC1 heavy chain subunit of clathrin. Involved in vesicle mediated trafficking. Mutants show reduced rates of endocytosis and defects clathrin mediated exocytosis. Mutants also have increased dehydration tolerance which may be related to the overall slower stomatal aperture dynamics. Overall growth is affected.	Clathrin, heavy chain;(source:Araport11)
AT3G09735.1	protein_coding	S1FA-like DNA-binding protein		S1FA-like DNA-binding protein;(source:Araport11)
AT3G09770.1	protein_coding	RING/U-box superfamily protein	Encodes a ubiquitin E3 ligase LOG2 (LOSS OF GDU2). Required for GLUTAMINE DUMPER1(GDU1)-induced amino secretion.	RING/U-box superfamily protein;(source:Araport11)
AT3G09440.1	protein_coding	Heat shock protein 70 (Hsp 70) family protein		Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT3G09450.1	protein_coding			fusaric acid resistance family protein;(source:Araport11)
AT3G09800.1	protein_coding	SNARE-like superfamily protein		SNARE-like superfamily protein;(source:Araport11)
AT3G09790.1	protein_coding	ubiquitin 8	encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions.	ubiquitin 8;(source:Araport11)
AT3G46480.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G46690.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G46320.1	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT3G46300.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G46310.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G02885.1	protein_coding	GAST1 protein homolog 5	GASA5, is involved in the regulation  of seedling thermotolerance.	GAST1 protein homolog 5;(source:Araport11)
AT3G46930.1	protein_coding	Protein kinase superfamily protein	Encodes a Raf-Like Mitogen-Activated Protein Kinase Kinase Kinase Raf43. Required for tolerance to multiple abiotic stresses.	Protein kinase superfamily protein;(source:Araport11)
AT3G47260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1);(source:TAIR10)
AT3G47270.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G30450.1);(source:TAIR10)
AT3G47280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 6.4e-82 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G46950.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT3G46940.1	protein_coding	DUTP-PYROPHOSPHATASE-LIKE 1		DUTP-PYROPHOSPHATASE-LIKE 1;(source:Araport11)
AT3G10525.1	protein_coding	LOSS OF GIANT CELLS FROM ORGANS	Encodes LGO (loss of giant cells from organs) required for endoreduplication in sepal giant cell formation.  Giant cells in both leaves and sepals are absent in lgo mutants.  LGO is a member of a plant specific cell cycle inhibitor family SIAMESE and was originally named as SMR1(SIAMESE RELATED 1).	LOSS OF GIANT CELLS FROM ORGANS;(source:Araport11)
AT3G45070.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a sulfotransferase with sulfating activity toward flavonoids.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G45080.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G45090.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G44450.1	protein_coding		Plant specific protein.BIC1 and BIC2  inhibit cryptochrome function by blocking blue light-dependent cryptochrome dimerization.Light activated transcription of BICs is mediated by cryptochromes.	hypothetical protein;(source:Araport11)
AT3G44440.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G02130.1	protein_coding	receptor-like protein kinase 2	Encodes a receptor-like kinase RPK2 (also known as TOADSTOOL 2/TOAD2).  Functions as a regulator of meristem maintenance.  Mutants are insensitive to synthetic CLV3 peptide.  Mutations in the RPK2 also result in stem cell expansion and increased number of floral organs, as seen in the other clv mutants. Forms homo-oligomers.	receptor-like protein kinase 2;(source:Araport11)
AT3G02320.1	protein_coding	N2,N2-dimethylguanosine tRNA methyltransferase		N2,N2-dimethylguanosine tRNA methyltransferase;(source:Araport11)
AT3G57785.1	protein_coding			ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) protein;(source:Araport11)
AT3G57800.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G61840.1	protein_coding	Protein of unknown function (DUF688)		auxin response factor, putative (DUF688);(source:Araport11)
AT3G61590.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein	F-box protein that is involved in some aspect of regulation of gene silencing by miRNA. Loss of function mutations have increased levels of some miRNAs. Its activity depends on the presence of functional F-box.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G61600.1	protein_coding	POZ/BTB containin G-protein 1	POZ/BTB containing-protein AtPOB1. Involvement in protein ubiquitylation is predicted based on physical interaction with CULLIN 3 proteins. The mRNA is cell-to-cell mobile.	POZ/BTB containin G-protein 1;(source:Araport11)
AT3G61610.1	protein_coding	Galactose mutarotase-like superfamily protein		Galactose mutarotase-like superfamily protein;(source:Araport11)
AT3G02390.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G02370.1	protein_coding			tRNA-splicing endonuclease subunit;(source:Araport11)
AT3G02720.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes a glyoxalase with high activity towards glyoxal and methylglyoxal.  It differs from its animal and bacterial homologs with respect to the configuration of its catalytic residues and the oligomeric property of the enzyme. The mRNA is cell-to-cell mobile.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT3G02555.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G02380.1	protein_coding	CONSTANS-like 2	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	CONSTANS-like 2;(source:Araport11)
AT3G45790.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G45770.1	protein_coding	Polyketide synthase, enoylreductase family protein		Polyketide synthase, enoylreductase family protein;(source:Araport11)
AT3G45780.1	protein_coding	phototropin 1	Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent  activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376.	phototropin 1;(source:Araport11)
AT3G07800.1	protein_coding	Thymidine kinase	Encodes a thymidine kinase that salvages DNA precursors.	Thymidine kinase;(source:Araport11)
AT3G07700.1	protein_coding	Protein kinase superfamily protein	ABC1K7 is a member of an atypical protein kinase family that is induced by salt stress. Loss of function mutations affect the metabolic profile of chloroplast lipids. It appears to function along with ABC1K8 in mediating lipid membrane changes in response to stress.	Protein kinase superfamily protein;(source:Araport11)
AT3G07720.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G07730.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G07740.1	protein_coding	homolog of yeast ADA2 2A	encodes a transcriptional adaptor ADA2a that interacts with histone acetyltransferase GCN5 homolog and CBF1	ADA2 2A;(source:Araport11)
AT3G07780.1	protein_coding	Protein of unknown function (DUF1423)	Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems. The mRNA is cell-to-cell mobile.	potyvirus VPg interacting protein (DUF1423);(source:Araport11)
AT3G07770.1	protein_coding	HEAT SHOCK PROTEIN 89.1		HEAT SHOCK PROTEIN 89.1;(source:Araport11)
AT3G08040.1	protein_coding	MATE efflux family protein	Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.	MATE efflux family protein;(source:Araport11)
AT3G07790.1	protein_coding	DGCR14-related		DGCR14-like protein;(source:Araport11)
AT3G07670.1	protein_coding	Rubisco methyltransferase family protein		Rubisco methyltransferase family protein;(source:Araport11)
AT3G07100.1	protein_coding	Sec23/Sec24 protein transport family protein	Encodes SEC24a/ERMO2.  Required for endoplasmic reticulum (ER) morphology. Has epistatic interactions with AT1G55350, AT3G59420, and AT3G10525.	Sec23/Sec24 protein transport family protein;(source:Araport11)
AT3G07090.1	protein_coding	PPPDE putative thiol peptidase family protein		PPPDE putative thiol peptidase family protein;(source:Araport11)
AT3G07080.1	protein_coding	EamA-like transporter family		EamA-like transporter family;(source:Araport11)
AT3G07070.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G59150.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI superfamily protein;(source:Araport11)
AT3G50760.1	protein_coding	galacturonosyltransferase-like 2	Encodes a protein with  putative galacturonosyltransferase activity. The mRNA is cell-to-cell mobile.	galacturonosyltransferase-like 2;(source:Araport11)
AT3G50740.1	protein_coding	UDP-glucosyl transferase 72E1	UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism.	UDP-glucosyl transferase 72E1;(source:Araport11)
AT3G50730.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G50750.1	protein_coding	BES1/BZR1 homolog 1		BES1/BZR1 homolog 1;(source:Araport11)
AT3G05730.1	protein_coding		Encodes a defensin-like (DEFL) family protein. The mRNA is cell-to-cell mobile.	defensin-like protein;(source:Araport11)
AT3G05740.1	protein_coding	RECQ helicase l1		RECQ helicase l1;(source:Araport11)
AT3G05675.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT3G45240.1	protein_coding	geminivirus rep interacting kinase 1	Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro. Involved in resistance to S. sclerotiorum, fungal sRNA target.	geminivirus rep interacting kinase 1;(source:Araport11)
AT3G33080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30650.1);(source:TAIR10)
AT3G33069.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.6e-294 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G01950.1	protein_coding	Protein of unknown function (DUF 3339)		peroxidase (DUF 3339);(source:Araport11)
AT3G02125.1	protein_coding			pinin-like protein;(source:Araport11)
AT3G02150.1	protein_coding	plastid transcription factor 1	a chloroplast trans-acting factor of the psbD light-responsive promoter.TCP gene involved in heterochronic control of leaf differentiation.	plastid transcription factor 1;(source:Araport11)
AT3G02140.1	protein_coding	AFP2 (ABI five-binding protein 2) family protein	Encodes a protein that acts in the nucleus and is an important negative regulator of ABA and salt stress responses, and could play a critical role in controlling root elongation, floral initiation and starch degradation.	AFP2 (ABI five-binding protein 2) family protein;(source:Araport11)
AT3G01910.1	protein_coding	sulfite oxidase	Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor.  It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum.  SO protein has been found in all parts of the plant. The plant SO combines its enzymatic  sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.	sulfite oxidase;(source:Araport11)
AT3G02190.1	protein_coding	Ribosomal protein L39 family protein		Ribosomal protein L39 family protein;(source:Araport11)
AT3G02200.1	protein_coding	Proteasome component (PCI) domain protein		Proteasome component (PCI) domain protein;(source:Araport11)
AT3G02180.1	protein_coding	SPIRAL1-like3	SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root,   leaf and petal growth as a result of defective anisotropic cell expansion.	SPIRAL1-like3;(source:Araport11)
AT3G02170.1	protein_coding	longifolia2	Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction.  The LNG2 homologue LNG1 (At5g15580) has similar function.	longifolia2;(source:Araport11)
AT3G02160.1	protein_coding	Bromodomain transcription factor		Bromodomain transcription factor;(source:Araport11)
AT3G01960.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G01880.1	protein_coding	Plant protein of unknown function (DUF946)		vacuolar sorting-associated protein (DUF946);(source:Araport11)
AT3G02000.1	protein_coding	Thioredoxin superfamily protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2 and suppress ORA59 promoter activity. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. Its function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).	Thioredoxin superfamily protein;(source:Araport11)
AT3G02010.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G55605.1	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT3G55580.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein	TCF1 encodes a member of the  RCC1 gene family and is required for chromatin based gene regulation of cold responsive genes in a CBF-independent manner. It is expressed in response to cold but not ABA.	Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G55590.1	protein_coding	Glucose-1-phosphate adenylyltransferase family protein		Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT3G47680.1	protein_coding	DNA binding		DNA binding protein;(source:Araport11)
AT3G47690.1	protein_coding	microtubule end binding protein EB1A	Encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.	microtubule end binding protein EB1A;(source:Araport11)
AT3G47700.1	protein_coding	RINT-1 / TIP-1 family	Involved in transportation of seed storage proteins from the ER to the vacuole. Mutant seed cell accumulates the precursors of 12S globulin and 2S albumin instead of the vacuolar-located mature proteins. Member of MAG2 complex, involved in the development of vegetative organs.	RINT-1 / TIP-1 family;(source:Araport11)
AT3G03710.1	protein_coding	polyribonucleotide nucleotidyltransferase, putative	Encodes a chloroplast polynucleotide phosphorylase (PNPase).  Involved in response to phosphorus (P) starvation. Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.	polyribonucleotide nucleotidyltransferase;(source:Araport11)
AT3G03700.1	protein_coding	Plasma-membrane choline transporter family protein		Plasma-membrane choline transporter family protein;(source:Araport11)
AT3G03910.1	protein_coding	glutamate dehydrogenase 3	GDH3 encodes a member of the glutamate dehydrogenease family. Its expression is upregulated in response to cytokinin and it may play a role in the control of nitrogen metabolism in leaf development.	glutamate dehydrogenase 3;(source:Araport11)
AT3G61780.1	protein_coding	embryo defective 1703		embryo defective 1703;(source:Araport11)
AT3G61790.1	protein_coding	Protein with RING/U-box and TRAF-like domains		Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT3G61800.1	protein_coding			ENTH/VHS protein;(source:Araport11)
AT3G62050.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G61770.1	protein_coding	Acid phosphatase/vanadium-dependent haloperoxidase-related protein		Acid phosphatase/vanadium-dependent haloperoxidase-related protein;(source:Araport11)
AT3G61710.1	protein_coding	AUTOPHAGY 6	Encodes autophagy protein 6 (ATG6), required for pollen germination and plant development.	AUTOPHAGY 6;(source:Araport11)
AT3G61820.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G61720.1	protein_coding	Ca2+dependent plant phosphoribosyltransferase family protein		Ca2+dependent plant phosphoribosyltransferase family protein;(source:Araport11)
AT3G61810.1	protein_coding	Glycosyl hydrolase family 17 protein		Glycosyl hydrolase family 17 protein;(source:Araport11)
AT3G61730.1	protein_coding	reduced male fertility	Encodes a nuclear localized F-box protein that is involved in tapetal layer degeneration and pollen development. Interacts with ASK1 and that interaction is mediated by the F-box domain.	reduced male fertility;(source:Araport11)
AT3G61830.1	protein_coding	auxin response factor 18		auxin response factor 18;(source:Araport11)
AT3G61740.1	protein_coding	SET domain protein 14	Encodes SET domain containing protein that acts redundantly with ATX4/5 to regulate histone H3-K4 methylation.	SET domain protein 14;(source:Araport11)
AT3G61750.1	protein_coding	Cytochrome b561/ferric reductase transmembrane with DOMON related domain		Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein;(source:Araport11)
AT3G61760.1	protein_coding	DYNAMIN-like 1B		DYNAMIN-like 1B;(source:Araport11)
AT3G05560.1	protein_coding	Ribosomal L22e protein family		Ribosomal L22e protein family;(source:Araport11)
AT3G05550.1	protein_coding	Hypoxia-responsive family protein		Hypoxia-responsive family protein;(source:Araport11)
AT3G05540.1	protein_coding	Methionine sulfoxide reductase (MSS4-like) family protein	Encodes TCTP2, a homolog of Translationally Controlled Tumor Protein. Enhances in vitro plant regeneration.	Methionine sulfoxide reductase (MSS4-like) family protein;(source:Araport11)
AT3G05580.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein	Encodes a Type One Protein Phosphatase that acts as a nucleocytoplasmic negative regulator of tip growth.  Mutants affect pollen germination, pollen tube growth, and root hair growth. It acts genetically downstream of ANX1 (AT3G04690) and ANX2 (AT5G28680) and is functionally redundant with TOPP8 (AT5G27840).	Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT3G05570.1	protein_coding			dipeptide transport ATP-binding protein;(source:Araport11)
AT3G05360.1	protein_coding	receptor like protein 30		receptor like protein 30;(source:Araport11)
AT3G05370.1	protein_coding	receptor like protein 31		receptor like protein 31;(source:Araport11)
AT3G43550.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G43630.1	protein_coding	Vacuolar iron transporter (VIT) family protein	The gene encodes nodulin-like3 whose transcript abundance was repressed under conditions of Fe-deficient growth.	Vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT3G52380.1	protein_coding	chloroplast RNA-binding protein 33	Encodes a chloroplast RNA-binding protein that stabilizes chloroplast RNAs as evidenced by analyses of transcript accumulation in null mutants. Essential for seedling development (albino, strongly retarded growth even on sucrose-containing medium).	chloroplast RNA-binding protein 33;(source:Araport11)
AT3G33075.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G33074.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G06035.1	protein_coding	Glycoprotein membrane precursor GPI-anchored		Glycoprotein membrane precursor GPI-anchored;(source:Araport11)
AT3G59845.1	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT3G11620.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G11600.1	protein_coding		One of two plant specific paralogs of unknown function. Interacts with GL2. GIR1/GIR2 loss of function resembles gl2 lof mutations.	E3 ubiquitin-protein ligase;(source:Araport11)
AT3G11380.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G59460.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT3G59470.1	protein_coding	Far-red impaired responsive (FAR1) family protein	Encodes one of four FRS (FAR1-RELATED SEQUENCE) factor-like genes in Arabidopsis.  FRS factors are characterized by having an N-terminal C2H2-type chelating motif of the WRKY- Glial Cell Missing1 family, a central core transposase domain of Mutator-like element transposases, and a C-terminal SWIM domain. The four FRF-like genes in  Arabidopsis share only the N-terminal motif with FRS proteins. FRF1 has been shown to bind the RB-box in vitro.  The RB-box contributes to restricting SHOOTMERISTEMLESS expression to the shoot apical meristem.	Far-red impaired responsive (FAR1) family protein;(source:Araport11)
AT3G59490.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G59480.1	protein_coding	pfkB-like carbohydrate kinase family protein	Encodes a member of the fructokinase gene family.  Nomenclature according to Riggs 2017 has been adopted for the family by the community (personal communication, Boernke, Callis, Granot, Boernke, and Smeekens).	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT3G42200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42810.1);(source:TAIR10)
AT3G42190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G42820.1);(source:TAIR10)
AT3G44050.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G11920.1	protein_coding	glutaredoxin-related		glutaredoxin-like protein;(source:Araport11)
AT3G11950.1	protein_coding	TRAF-like superfamily protein	publications Tian et al (2007) and Sadre et al (2006) refer to At3g11950. The prenyltransferase gene studied is actually At3g11945 which arises from a split of the previous At3g11950 gene model.	TRAF-like superfamily protein;(source:Araport11)
AT3G11710.1	protein_coding	lysyl-tRNA synthetase 1		lysyl-tRNA synthetase 1;(source:Araport11)
AT3G11960.1	protein_coding	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein		Cleavage and polyadenylation specificity factor (CPSF) A subunit protein;(source:Araport11)
AT3G11745.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G11940.1	protein_coding	ribosomal protein 5A	One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes.  Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant.	ribosomal protein 5A;(source:Araport11)
AT3G11930.1	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G51360.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G51340.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G51350.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G60350.1	protein_coding	ARABIDILLO-2	ARABIDILLO-2 and its homolog, ARABIDILLO -1, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-2 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-2-overexpressing lines produce more lateral roots than wild-type seedlings.	ARABIDILLO-2;(source:Araport11)
AT3G60180.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G60245.1	protein_coding	Zinc-binding ribosomal protein family protein		Zinc-binding ribosomal protein family protein;(source:Araport11)
AT3G60210.1	protein_coding	GroES-like family protein		GroES-like family protein;(source:Araport11)
AT3G60170.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.6e-229 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G60200.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G60190.1	protein_coding	DYNAMIN-like 1E	At3g60190 encodes Arabidopsis dynamin-related protein 1E, DRP1E, also known as EDR3, ADL4 and ADL1E, which is 624 amino acid residues long, has a predicted mass of 69.8 kDa and a pI of 7.5.  Dynamin-related protein 1E belongs to a plant-specific subclass of dynamin-related proteins (DRP1), consisting of five members in Arabidopsis (A, B, C, D, E). This class is characterized by having an N-terminal GTPase domain, a central ‘dynamin 2‘ domain and a C-terminal GTPase effector domain (GED), a typical structure for plant dynamin-related proteins. However, this class lacks a PH domain and a proline-rich domain, which are found in classical animal dynamin-like proteins. Based on work on animal dynamins, the plant DRP1 proteins should be able to form polymeric structures that wrap around membranes to facilitate membrane tubulation and pinching off of vesicles, processes that are essential to vesicle trafficking and membrane compartmentalization.  The edr3 mutation causes a P77L substitution in the G2 motif of the GTPase domain of DRP1E.  edr3 mutant Arabidopsis plants display enhanced cell death in response to powdery mildew infection.	DYNAMIN-like 1E;(source:Araport11)
AT3G56050.1	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT3G56060.1	protein_coding	Glucose-methanol-choline (GMC) oxidoreductase family protein		Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT3G56070.1	protein_coding	rotamase cyclophilin 2	rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction.	rotamase cyclophilin 2;(source:Araport11)
AT3G12320.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G12150.1	protein_coding			alpha/beta hydrolase family protein;(source:Araport11)
AT3G01930.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G01990.1	protein_coding	ACT domain repeat 6	Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.	ACT domain repeat 6;(source:Araport11)
AT3G01920.1	protein_coding	DHBP synthase RibB-like alpha/beta domain		DHBP synthase RibB-like alpha/beta domain-containing protein;(source:Araport11)
AT3G01750.1	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT3G01760.1	protein_coding	Transmembrane amino acid transporter family protein	Encodes an amino acid transporter expressed in the root that is involved in the uptake of acidic amino acids, glutamine and alanine, and probably phenylalanine.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT3G01690.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G01770.1	protein_coding	bromodomain and extraterminal domain protein 10	Bromodomain protein that functions as a negative regulator of sugar and ABA signaling.	bromodomain and extraterminal domain protein 10;(source:Araport11)
AT3G01900.1	protein_coding	cytochrome P450, family 94, subfamily B, polypeptide 2	member of CYP94B	cytochrome P450, family 94, subfamily B, polypeptide 2;(source:Araport11)
AT3G01890.1	protein_coding	SWIB/MDM2 domain superfamily protein	Encodes SWP73A, a subunit of the SWI/SNF chromatin remodeling complex. While undergoing normal vegetative development, swp73a mutants display reduced expression of FLOWERING LOCUS C and early flowering in short days.	SWIB/MDM2 domain superfamily protein;(source:Araport11)
AT3G01970.1	protein_coding	WRKY DNA-binding protein 45	member of WRKY Transcription Factor; Group I	WRKY DNA-binding protein 45;(source:Araport11)
AT3G01940.1	protein_coding	Protein of unknown function (DUF 3339)		transmembrane protein, putative (DUF 3339);(source:Araport11)
AT3G01980.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G02020.1	protein_coding	aspartate kinase 3	encodes a monofunctional aspartate kinase	aspartate kinase 3;(source:Araport11)
AT3G06320.1	protein_coding	Ribosomal protein L33 family protein		Ribosomal protein L33 family protein;(source:Araport11)
AT3G06455.1	protein_coding	ubiquitin family protein		ubiquitin family protein;(source:Araport11)
AT3G06080.1	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT3G06310.1	protein_coding	Cox19-like CHCH family protein		Cox19-like CHCH family protein;(source:Araport11)
AT3G06340.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT3G06330.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G06300.1	protein_coding	P4H isoform 2	Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins. The mRNA is cell-to-cell mobile.	P4H isoform 2;(source:Araport11)
AT3G61370.1	protein_coding	Protein of unknown function (DUF3245)		pre-mRNA-splicing factor CWC22-like protein (DUF3245);(source:Araport11)
AT3G61380.1	protein_coding	Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related		Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT3G61415.1	protein_coding	SKP1-like 21		SKP1-like 21;(source:Araport11)
AT3G61390.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G61400.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	1-aminocyclopropane-1-carboxylate oxidase-like protein	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G49130.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein;(source:Araport11)
AT3G49140.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G49120.1	protein_coding	peroxidase CB	Class III peroxidase Perx34. Expressed in roots, leaves and stems. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response. The mRNA is cell-to-cell mobile.	peroxidase CB;(source:Araport11)
AT3G49305.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G49110.1	protein_coding	peroxidase CA	Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light.  May play a role in generating H2O2 during defense response. The mRNA is cell-to-cell mobile.	peroxidase CA;(source:Araport11)
AT3G05940.1	protein_coding	Protein of unknown function (DUF300)		organic solute transporter ostalpha protein (DUF300);(source:Araport11)
AT3G05900.1	protein_coding	neurofilament protein-related		neurofilament protein-like protein;(source:Araport11)
AT3G05910.1	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT3G50180.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G49910.1	protein_coding	Translation protein SH3-like family protein		Translation protein SH3-like family protein;(source:Araport11)
AT3G49920.1	protein_coding	voltage dependent anion channel 5	Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.	voltage dependent anion channel 5;(source:Araport11)
AT3G50170.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G52540.1	protein_coding	ovate family protein 18		ovate family protein 18;(source:Araport11)
AT3G52560.1	protein_coding	ubiquitin E2 variant 1D-4	MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1D can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ4/UEV1D transcripts are found in most plant organs, like the other three MMZ/UEV1 family members, but it is normally present at higher levels. In addition, MMZ4/UEV1D is the only family member whose transcripts are detected in pollen. However, MMZ4/UEV1D transcript levels do not appear to be stress-inducible. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays.	ubiquitin E2 variant 1D-4;(source:Araport11)
AT3G52570.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G52600.1	protein_coding	cell wall invertase 2		cell wall invertase 2;(source:Araport11)
AT3G52530.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G52580.1	protein_coding	Ribosomal protein S11 family protein		Ribosomal protein S11 family protein;(source:Araport11)
AT3G52550.1	protein_coding			transcription repressor OFP15-like protein;(source:Araport11)
AT3G52590.1	protein_coding	ubiquitin extension protein 1	Ubiquitin extension protein The mRNA is cell-to-cell mobile.	ubiquitin extension protein 1;(source:Araport11)
AT3G06860.1	protein_coding	multifunctional protein 2	Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes. The mRNA is cell-to-cell mobile.	multifunctional protein 2;(source:Araport11)
AT3G06690.1	protein_coding	acyl-CoA oxidases;oxidoreductases, acting on the CH-CH group of donors;FAD binding;oxidoreductases;acyl-CoA oxidases		putative acyl-coenzyme A oxidase;(source:Araport11)
AT3G06700.1	protein_coding	Ribosomal L29e protein family		Ribosomal L29e protein family;(source:Araport11)
AT3G06670.1	protein_coding	binding	SMEK1 forms a catalytically active complex with  PP4 proteins. The complex has been shown to target and dephosphorylate HYL1 which in turn promotes miRNA biogenesis. Mutants have pleiotrophic phenotypes and decreased production of miRNA. SMEK1 accumulation is responsive to ABA.	binding protein;(source:Araport11)
AT3G09180.1	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT3G09170.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04545.1);(source:TAIR10)
AT3G15115.1	protein_coding			serine/arginine repetitive matrix protein;(source:Araport11)
AT3G52190.1	protein_coding	phosphate transporter traffic facilitator1	Encodes a plant specific protein structurally related to the SEC12 proteins of the early secretory pathway. Mutation of PHF1 impairs Pi transport. Expression was detected in all tissues, and was induced by Pi starvation. Localized in endoplasmic reticulum (ER), and mutation of PHF1 resulted in ER retention and reduced  accumulation of the plasma membrane PHT1;1 transporter. Its expression is responsive to both phosphate (Pi) and phosphite (Phi) in shoots.	phosphate transporter traffic facilitator1;(source:Araport11)
AT3G52230.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G52155.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT3G52200.1	protein_coding	Dihydrolipoamide acetyltransferase, long form protein	Encodes a dihydrolipoamide S-acetyltransferase, a subunit of the mitochondrial pyruvate dehydrogenase complex.	Dihydrolipoamide acetyltransferase, long form protein;(source:Araport11)
AT3G52220.1	protein_coding			leukocyte immunoglobulin-like receptor family A protein;(source:Araport11)
AT3G52210.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G42140.1	protein_coding	zinc ion binding;nucleic acid binding		zinc ion binding / nucleic acid binding protein;(source:Araport11)
AT3G53300.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 31	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 31;(source:Araport11)
AT3G01700.1	protein_coding	arabinogalactan protein 11	Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP11 function results in decreased fertility due to defects in pollen tube growth.	arabinogalactan protein 11;(source:Araport11)
AT3G01780.1	protein_coding	ARM repeat superfamily protein	Encodes TPLATE, a cytokinesis protein targeted to the cell plate.  Functions in vesicle-trafficking events required for site-specific cell wall modifications during pollen germination and for anchoring of the cell plate to the mother wall at the correct cortical position.	ARM repeat superfamily protein;(source:Araport11)
AT3G01720.1	protein_coding			peptidyl serine alpha-galactosyltransferase;(source:Araport11)
AT3G01740.1	protein_coding	Mitochondrial ribosomal protein L37		Mitochondrial ribosomal protein L37;(source:Araport11)
AT3G01710.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family		TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT3G01730.1	protein_coding		Mutants exhibit shorter root hairs under phosphate-deficient conditions.	transmembrane protein;(source:Araport11)
AT3G06630.1	protein_coding	protein kinase family protein		protein kinase family protein;(source:Araport11)
AT3G06650.1	protein_coding	ATP-citrate lyase B-1	One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase	ATP-citrate lyase B-1;(source:Araport11)
AT3G53690.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G53700.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G43310.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT3G04540.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT3G04800.1	protein_coding	translocase inner membrane subunit 23-3		translocase inner membrane subunit 23-3;(source:Araport11)
AT3G42725.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT3G42700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04130.1);(source:TAIR10)
AT3G42710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G09960.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT3G09970.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein	Encodes a cytosolic tyrosine phosphatase.	Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT3G09950.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G09780.1	protein_coding	CRINKLY4 related 1		CRINKLY4 related 1;(source:Araport11)
AT3G09940.1	protein_coding	monodehydroascorbate reductase	Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.	monodehydroascorbate reductase;(source:Araport11)
AT3G52830.1	protein_coding			ankyrin repeat protein;(source:Araport11)
AT3G58090.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT3G58070.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile–adult leaf transition and inducing the formation of rosette leaves on inflorescence stems.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT3G11060.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G11160.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G11210.1	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT3G11050.1	protein_coding	ferritin 2		ferritin 2;(source:Araport11)
AT3G11170.1	protein_coding	fatty acid desaturase 7	Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid. The mRNA is cell-to-cell mobile.	fatty acid desaturase 7;(source:Araport11)
AT3G11110.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G11220.1	protein_coding	Paxneb protein-related	A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1?ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.	Paxneb protein-like protein;(source:Araport11)
AT3G11100.1	protein_coding	sequence-specific DNA binding transcription factors	SANT and trihelix-domain protein. Interacts with agrobacterium virulence protein VirF. It also plays a role in regulation of histone acetylation during ethylene signaling. It binds EIN2 and EIN3 and histone H3.	sequence-specific DNA binding transcription factor;(source:Araport11)
AT3G25805.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G27810.1	protein_coding	myb domain protein 21	Encodes a member of the R2R3-MYB transcription factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development. MYB21 interacts with JAZ proteins, and functions redundantly with MYB24 and MYB57 to regulate stamen development.	myb domain protein 21;(source:Araport11)
AT3G15352.1	protein_coding	cytochrome c oxidase 17	Encodes protein similar to yeast COX17, a copper-binding protein that mediates the delivery of Cu to the mitochondria for the assembly of a functional cytochrome oxidase complex.	cytochrome c oxidase 17;(source:Araport11)
AT3G15353.1	protein_coding	metallothionein 3	metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage	metallothionein 3;(source:Araport11)
AT3G15351.1	protein_coding			P53/DNA damage-regulated protein;(source:Araport11)
AT3G24315.1	protein_coding	Sec20 family protein		Sec20 family protein;(source:Araport11)
AT3G63320.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G63350.1	protein_coding	winged-helix DNA-binding transcription factor family protein	member of Heat Stress Transcription Factor (Hsf) family	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT3G63360.1	protein_coding	defensin-related	Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT3G63280.1	protein_coding	NIMA-related kinase 4	Encodes AtNek4, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 4;(source:Araport11)
AT3G63370.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a chloroplast RNA editing factor.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G63290.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G63340.1	protein_coding	Protein phosphatase 2C family protein		kinase superfamily protein;(source:Araport11)
AT3G63300.1	protein_coding	FORKED 1	Encodes a pleckstrin homology domain- and DUF828-containing protein. Mutants have defects in leaf vascular pattering, with vascular bundles that fail to meet distally in both the cotyledons and leaves. Necessary to the formation of the closed leaf vascular pattern characteristic of dicot leaves in response to auxin. Redundant with FKD2. FKD1 may influence PIN1 localization in an auxin dependent  manner. proposed to be a key component of the auxin canalization pathway. FORKED-LIKE family member, part of Group 1 (FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	FORKED 1;(source:Araport11)
AT3G63310.1	protein_coding	Bax inhibitor-1 family protein	Mediates cell elongation in brassinosteroid signaling.	Bax inhibitor-1 family protein;(source:Araport11)
AT3G14075.1	protein_coding	Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3		Mono-/di-acylglycerol lipase, N-terminal;(source:Araport11)
AT3G14205.1	protein_coding	Phosphoinositide phosphatase family protein		Phosphoinositide phosphatase family protein;(source:Araport11)
AT3G12685.1	protein_coding	Acid phosphatase/vanadium-dependent haloperoxidase-related protein		Acid phosphatase/vanadium-dependent haloperoxidase-related protein;(source:Araport11)
AT3G12650.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G12670.1	protein_coding	CTP synthase family protein	Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT3G12640.1	protein_coding	RNA binding (RRM/RBD/RNP motifs) family protein		RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G13845.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G23605.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT3G13228.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G13235.1	protein_coding	ubiquitin family protein		ubiquitin family protein;(source:Araport11)
AT3G13226.1	protein_coding	regulatory protein RecX family protein		regulatory protein RecX family protein;(source:Araport11)
AT3G16430.1	protein_coding	jacalin-related lectin 31	Encodes a protein that increases the beta-glucosidase activities of three scopolin glucosidases in vitro.	jacalin-related lectin 31;(source:Araport11)
AT3G16560.1	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G11980.1	protein_coding	Jojoba acyl CoA reductase-related male sterility protein	Similar to fatty acid reductases.	Jojoba acyl CoA reductase-related male sterility protein;(source:Araport11)
AT3G12050.1	protein_coding	Aha1 domain-containing protein		Aha1 domain-containing protein;(source:Araport11)
AT3G12040.1	protein_coding	DNA-3-methyladenine glycosylase (MAG)	Encodes a 3-methyladenine-DNA glycosylase. Arabdiopsis cDNA complements the methyl methanesulfonate-sensitive phenotype of an Escherichia coli double mutant deficient in 3-methyladenine glycosylases (DNA-3-methyladenine glycosidases I and II, EC 3.2.2.20 and 3.2.2.21, respectively, encoded by tag and alkA).	DNA-3-methyladenine glycosylase (MAG);(source:Araport11)
AT3G12000.1	protein_coding	S-locus related protein SLR1, putative (S1)		S-locus related protein SLR1, putative (S1);(source:Araport11)
AT3G11970.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.5e-201 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G11990.1	protein_coding	Protein of unknown function (DUF784)		ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT3G17365.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G12955.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G13062.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT3G14595.1	protein_coding	Ribosomal protein L18ae family		Ribosomal protein L18ae family;(source:Araport11)
AT3G13175.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G15357.1	protein_coding			phosphopantothenoylcysteine decarboxylase subunit;(source:Araport11)
AT3G25165.1	protein_coding	ralf-like 25	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 25;(source:Araport11)
AT3G22231.1	protein_coding	pathogen and circadian controlled 1	Encodes a member of a novel 6 member Arabidopsis gene family.  Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato.	pathogen and circadian controlled 1;(source:Araport11)
AT3G23325.1	protein_coding	Splicing factor 3B subunit 5/RDS3 complex subunit 10		Splicing factor 3B subunit 5/RDS3 complex subunit 10;(source:Araport11)
AT3G14395.1	protein_coding		Protein Involved in the Regulation of Herbivore-Associated Signaling Pathways, affecting the expression of genes involved in biosynthesis and signaling of the jasmonic acid and salicylic acid hormones.	hypothetical protein;(source:Araport11)
AT3G07690.1	protein_coding	6-phosphogluconate dehydrogenase family protein		6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT3G07710.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G07750.1	protein_coding	3'-5'-exoribonuclease family protein		3-5-exoribonuclease family protein;(source:Araport11)
AT3G07680.1	protein_coding	emp24/gp25L/p24 family/GOLD family protein	Encodes an Golgi-localized p24 protein. Interacts with p24delta5 at ER export sites for ER exit and coupled transport to the Golgi apparatus. The mRNA is cell-to-cell mobile.	emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT3G07760.1	protein_coding	Sterile alpha motif (SAM) domain-containing protein	Ortholog of Peach WEEP gene containing a  sterile alpha motif. In peach, WEEP is responsible for pendulous branching phenotype. However in Arabidopsis no morphological branching defect has been observed in mutant lines.	Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G19770.1	protein_coding	Vacuolar sorting protein 9 (VPS9) domain	Guanine nucleotide exchange factor VPS9a. Can activate all Rab5 members to GTP-bound  forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development.	Vacuolar sorting protein 9 (VPS9) domain-containing protein;(source:Araport11)
AT3G19780.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G19790.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G28007.1	protein_coding	Nodulin MtN3 family protein		Nodulin MtN3 family protein;(source:Araport11)
AT3G22234.1	pseudogene			pseudogene of ribulose-bisphosphate carboxylases;(source:Araport11)
AT3G24515.1	protein_coding	ubiquitin-conjugating enzyme 37		ubiquitin-conjugating enzyme 37;(source:Araport11)
AT3G24503.1	protein_coding	aldehyde dehydrogenase 2C4	Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase  catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively	aldehyde dehydrogenase 2C4;(source:Araport11)
AT3G24506.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G20865.1	protein_coding	arabinogalactan protein 40	Encodes a putative arabinogalactan-protein (AGP40).	arabinogalactan protein 40;(source:Araport11)
AT3G26085.1	protein_coding	CAAX amino terminal protease family protein		CAAX amino terminal protease family protein;(source:Araport11)
AT3G25905.1	protein_coding	CLAVATA3/ESR-RELATED 27	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 27;(source:Araport11)
AT3G25855.1	protein_coding	Copper transport protein family		Copper transport protein family;(source:Araport11)
AT3G18215.1	protein_coding	Protein of unknown function, DUF599		transmembrane protein, putative (Protein of unknown function, DUF599);(source:Araport11)
AT3G18165.1	protein_coding	modifier of snc1,4	Encodes MOS4 (Modifier of snc1, 4), a nuclear protein homologous to human Breast Cancer-Amplified Sequence (BCAS2).  MOS4 interacts with AtCDC5 and PRL1.  All three proteins are essential for plant innate immunity.	modifier of snc1,4;(source:Araport11)
AT3G21055.1	protein_coding	photosystem II subunit T	Encodes photosystem II 5 kD protein subunit PSII-T. This is a nuclear-encoded gene (PsbTn) which also has a plastid-encoded paralog (PsbTc).	photosystem II subunit T;(source:Araport11)
AT3G30510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT3G16175.1	protein_coding	Thioesterase superfamily protein		Thioesterase superfamily protein;(source:Araport11)
AT3G29375.1	protein_coding	XH domain-containing protein		XH domain-containing protein;(source:Araport11)
AT3G19290.1	protein_coding	ABRE binding factor 4	bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediates ABA-dependent stress responses.ABF4 acts through SnRK2 pathway and binds to ABA response elements of the promoters of NYE1 and regulates their expression to promote chlorophyll degradation.	ABRE binding factor 4;(source:Araport11)
AT3G25485.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.3e-49 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G25545.1	protein_coding			trigger factor;(source:Araport11)
AT3G21175.1	protein_coding	ZIM-like 1	member of a novel family of plant-specific GATA-type transcription factors.	ZIM-like 1;(source:Araport11)
AT3G16270.1	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT3G23805.1	protein_coding	ralf-like 24	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 24;(source:Araport11)
AT3G09085.1	protein_coding	Protein of unknown function (DUF962)		transmembrane protein (DUF962);(source:Araport11)
AT3G09160.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G09190.1	protein_coding	Concanavalin A-like lectin family protein	Regulates flowering time in Ws ecotype.	Concanavalin A-like lectin family protein;(source:Araport11)
AT3G09150.1	protein_coding	phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)	Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin.  Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase.  It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.	phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2);(source:Araport11)
AT3G09020.1	protein_coding	alpha 1,4-glycosyltransferase family protein		alpha 1,4-glycosyltransferase family protein;(source:Araport11)
AT3G03930.1	protein_coding	protein kinase-related		kinase-like protein;(source:Araport11)
AT3G03920.1	protein_coding	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein		H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein;(source:Araport11)
AT3G05165.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G03520.1	protein_coding	non-specific phospholipase C3	Lysophosphatidic acid phosphatase highly expressed during phosphate starvation and abiotic stresses.  Role in lipid synthesis.	non-specific phospholipase C3;(source:Araport11)
AT3G03510.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G03530.1	protein_coding	non-specific phospholipase C4	PHOSPHOESTERASE FAMILY PROTEIN,  NPC4 is significantly induced upon phosphate starvation and plays an important role in the supply of inorganic phosphate and diacylglycerol from membrane-phospholipids during phosphate deprivation.	non-specific phospholipase C4;(source:Araport11)
AT3G01360.1	protein_coding	Family of unknown function (DUF716) 		plant viral-response family protein (DUF716);(source:Araport11)
AT3G01340.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G01350.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G01330.1	protein_coding	DP-E2F-like protein 3	Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway.	DP-E2F-like protein 3;(source:Araport11)
AT3G01320.1	protein_coding	SIN3-like 1	Encodes SIN3-like 1, a homolog of the transcriptional repressor SIN3 (AT1G24190).	SIN3-like 1;(source:Araport11)
AT3G33151.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 7.6e-76 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT3G54640.1	protein_coding	tryptophan synthase alpha chain	Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2).	tryptophan synthase alpha chain;(source:Araport11)
AT3G54410.1	protein_coding	Protein of unknown function (DUF1163)		hypothetical protein (DUF1163);(source:Araport11)
AT3G54400.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G54420.1	protein_coding	homolog of carrot EP3-3 chitinase	encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot.  Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.	homolog of carrot EP3-3 chitinase;(source:Araport11)
AT3G54430.1	protein_coding	SHI-related sequence 6	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	SHI-related sequence 6;(source:Araport11)
AT3G54620.1	protein_coding	basic leucine zipper 25	bZIP transcription factor-like protein mRNA	basic leucine zipper 25;(source:Araport11)
AT3G54390.1	protein_coding	sequence-specific DNA binding transcription factors		sequence-specific DNA binding transcription factor;(source:Araport11)
AT3G54610.1	protein_coding	histone acetyltransferase of the GNAT family 1	Encodes a histone acetyltransferase that plays a role in the determination of the embryonic root-shoot axis.  It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In addition, it is involved in stem cuticular wax accumulation by modulating CER3 expression via H3K9/14 acetylation. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates  for HAG1-catalyzed acetylation. However, prior acetylation  of H3 lysine 14 blocks radioactive acetylation of the  peptide by HAG1.  HAG1 is specific for  histone H3 lysine 14.	histone acetyltransferase of the GNAT family 1;(source:Araport11)
AT3G54380.1	protein_coding	SAC3/GANP/Nin1/mts3/eIF-3 p25 family		SAC3/GANP/Nin1/mts3/eIF-3 p25 family;(source:Araport11)
AT3G54540.1	protein_coding	general control non-repressible 4	member of GCN subfamily	general control non-repressible 4;(source:Araport11)
AT3G42280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.3e-71 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G42290.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);retrotransposon family;(source:TAIR10)
AT3G54990.1	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ),  share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G55000.1	protein_coding	tonneau family protein	Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1A can functionally complement TON1B and their roles appear to be redundant in plants. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1A associates with plant centrins CEN1 and CEN2.	tonneau family protein;(source:Araport11)
AT3G55005.1	protein_coding	tonneau 1b (TON1b)	Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1B appears to be redundant with TON1A. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1B associates with plant centrin CEN1.	tonneau 1b (TON1b);(source:Araport11)
AT3G54970.1	protein_coding	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein		D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT3G54930.1	protein_coding	Protein phosphatase 2A regulatory B subunit family protein		Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT3G54950.1	protein_coding	patatin-like protein 6	Encodes pPLAIIIbeta, a member of the Group 3 patatin-related phospholipases. pPLAIIIbeta hydrolyzes phospholipids and galactolipids and additionally has acyl-CoA thioesterase activity. Alterations of pPLAIII&#946; result in changes in lipid levels and composition.	patatin-like protein 6;(source:Araport11)
AT3G54960.1	protein_coding	PDI-like 1-3	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.	PDI-like 1-3;(source:Araport11)
AT3G54980.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G08820.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G08980.1	protein_coding	Peptidase S24/S26A/S26B/S26C family protein		Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT3G08990.1	protein_coding	Yippee family putative zinc-binding protein		Yippee family putative zinc-binding protein;(source:Araport11)
AT3G09010.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G03305.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT3G03040.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G62030.1	protein_coding	rotamase CYP 4	nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	rotamase CYP 4;(source:Araport11)
AT3G51590.1	protein_coding	lipid transfer protein 12	Encodes a member of the lipid transfer protein family.  Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues.  The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids.  They are localized to the cell wall.  The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	lipid transfer protein 12;(source:Araport11)
AT3G51610.1	protein_coding		Encodes a membrane protein NO PRIMEXINE AND PLASMA MEMBRANE UNDULATION (NPU). Involved in primexine deposition and plasma membrane undulation during early pollen wall development.	ATP-dependent helicase/deoxyribonuclease subunit B;(source:Araport11)
AT3G51560.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G51570.1	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G51600.1	protein_coding	lipid transfer protein 5	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	lipid transfer protein 5;(source:Araport11)
AT3G51580.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G51620.1	protein_coding	PAP/OAS1 substrate-binding domain superfamily		PAP/OAS1 substrate-binding domain superfamily;(source:Araport11)
AT3G11720.1	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT3G11630.1	protein_coding	Thioredoxin superfamily protein	Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues. Functions in redox cascade with TrxL2 via the ferredoxin-thioredoxin reductase (FTR)/thioredoxin (Trx) pathway to mediate the light-responsive reductive control of target proteins. Continuously transfers reducing power from TrxL2 to H2O2.	Thioredoxin superfamily protein;(source:Araport11)
AT3G07310.1	protein_coding	Protein of unknown function (DUF760)		phosphoserine aminotransferase, putative (DUF760);(source:Araport11)
AT3G31930.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28940.1);(source:TAIR10)
AT3G31920.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 3.0e-163 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT3G58960.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT3G63160.1	protein_coding		Member of the Arabidopsis 7-kDa OEP family. Tail-anchored (TA) membrane protein which possesses a single C-terminal transmembrane domain targeting post-translationally to plastids.	outer envelope membrane protein;(source:Araport11)
AT3G63180.1	protein_coding	TIC-like		TIC-like protein;(source:Araport11)
AT3G63170.1	protein_coding	Chalcone-flavanone isomerase family protein	Encodes a plastid stroma localized fatty acid binding protein involved in fatty acid metabolism.	Chalcone-flavanone isomerase family protein;(source:Araport11)
AT3G12010.1	protein_coding			C18orf8;(source:Araport11)
AT3G12020.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G12060.1	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT3G12160.1	protein_coding	RAB GTPase homolog A4D	Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity.	RAB GTPase homolog A4D;(source:Araport11)
AT3G12030.1	protein_coding	Protein of unknown function DUF106, transmembrane		transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane);(source:Araport11)
AT3G42780.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G48740.1	protein_coding	Nodulin MtN3 family protein	Encodes a member of the SWEET sucrose efflux transporter family proteins.	Nodulin MtN3 family protein;(source:Araport11)
AT3G47295.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G03540.1	protein_coding	non-specific phospholipase C5	Encodes a nonspecific phospholipase C. Located in the cytosol. Involved in the conversion of phospholipids to glycolipids under phosphate deprivation conditions.	non-specific phospholipase C5;(source:Araport11)
AT3G03560.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G03550.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G09930.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G01290.1	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT3G01300.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G47833.1	protein_coding		predicted to encode subunit 7 of mitochondrial complex II and to participate in the respiratory chain	succinate dehydrogenase subunit;(source:Araport11)
AT3G47836.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G48120.1	protein_coding			serine/arginine-rich splicing factor;(source:Araport11)
AT3G48240.1	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT3G48185.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G52170.1	protein_coding	DNA binding		DNA binding protein;(source:Araport11)
AT3G52180.1	protein_coding	dual specificity protein phosphatase (DsPTP1) family protein	Encodes a plant-specific glucan phosphatase that contains a noncatalytic  carbohydrate-binding module as well as a dual specificity protein phosphatase domain. SEX4 can dephosphorylate C6- and C3-glucosyl residues on native starch grains and related maltodextrin compounds in vitro. This protein interacts with the plant SnRK AKIN11, binds starch, and is localized in the chloroplast. sex4 mutants have elevated levels of starch.	dual specificity protein phosphatase (DsPTP1) family protein;(source:Araport11)
AT3G29763.1	protein_coding	General transcription factor 2-related zinc finger protein		General transcription factor 2-related zinc finger protein;(source:Araport11)
AT3G29765.1	protein_coding	General transcription factor 2-related zinc finger protein		General transcription factor 2-related zinc finger protein;(source:Araport11)
AT3G48425.1	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT3G48350.1	protein_coding	Cysteine proteinases superfamily protein	Involved in starvation-related responses that curtail primary root growth under severe nutrient limitation.	Cysteine proteinases superfamily protein;(source:Araport11)
AT3G12660.1	protein_coding	FASCICLIN-like arabinogalactan protein 14 precursor	fasciclin-like arabinogalactan-protein, family (FLA14). Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan protein 14 precursor;(source:Araport11)
AT3G12680.1	protein_coding	floral homeotic protein (HUA1)	Member of the floral homeotic AGAMOUS pathway.	floral homeotic protein (HUA1);(source:Araport11)
AT3G16340.1	protein_coding	pleiotropic drug resistance 1	Encodes a p-coumaryl alcohol exporter involved in lignin biosynthesis.	pleiotropic drug resistance 1;(source:Araport11)
AT3G16300.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT3G16280.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G16370.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates. The mRNA is cell-to-cell mobile.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G16410.1	protein_coding	nitrile specifier protein 4	Encodes a nitrile-specifier protein NSP4. NSP4 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation. The mRNA is cell-to-cell mobile.	nitrile specifier protein 4;(source:Araport11)
AT3G16320.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Subunit in the anaphase-promoting complex. Role in gametogenesis, control of mitotic  progression and cell differentiation during the entire life cycle.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G16415.1	pseudogene			pseudogene of myrosinase-binding protein 2;(source:Araport11)
AT3G16380.1	protein_coding	poly(A) binding protein 6	polyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins.	poly(A) binding protein 6;(source:Araport11)
AT3G16440.1	protein_coding	myrosinase-binding protein-like protein-300B	myrosinase-binding protein-like protein (AtMLP-300B) mRNA,	myrosinase-binding protein-like protein-300B;(source:Araport11)
AT3G16330.1	protein_coding			Avr9/Cf-9 rapidly elicited protein;(source:Araport11)
AT3G16360.1	protein_coding	HPT phosphotransmitter 4	Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	HPT phosphotransmitter 4;(source:Araport11)
AT3G16470.1	protein_coding	Mannose-binding lectin superfamily protein	Encodes a JA-responsive gene that coordinates with GRP7 in shaping plant development through the regulation of RNA processing in Arabidopsis. AtJAC1 interacts with RNA binding protein GRP7 specifically in the cytoplasm to regulate its nucleocytoplasmic distribution.	Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G16310.1	protein_coding	mitotic phosphoprotein N' end (MPPN) family protein		mitotic phosphoprotein N end (MPPN) family protein;(source:Araport11)
AT3G16400.1	protein_coding	nitrile specifier protein 1	Encodes a nitrile-specifier protein NSP1 responsible for constitutive and herbivore-induced simple nitrile formation in rosette leaves. NSP1 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation. The mRNA is cell-to-cell mobile.	nitrile specifier protein 1;(source:Araport11)
AT3G16350.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G16450.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G16420.1	protein_coding	PYK10-binding protein 1	The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular  chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests. The mRNA is cell-to-cell mobile.	PYK10-binding protein 1;(source:Araport11)
AT3G16390.1	protein_coding	nitrile specifier protein 3	Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation. The mRNA is cell-to-cell mobile.	nitrile specifier protein 3;(source:Araport11)
AT3G16480.1	protein_coding	mitochondrial processing peptidase alpha subunit		mitochondrial processing peptidase alpha subunit;(source:Araport11)
AT3G16460.1	protein_coding	Mannose-binding lectin superfamily protein	Mannose-binding protein	Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G60010.1	protein_coding	SKP1-like 13		SKP1-like 13;(source:Araport11)
AT3G60020.1	protein_coding	SKP1-like 5		SKP1-like 5;(source:Araport11)
AT3G44735.1	protein_coding	PHYTOSULFOKINE 3 PRECURSOR	Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor.	PHYTOSULFOKINE 3 PRECURSOR;(source:Araport11)
AT3G50685.1	protein_coding			anti-muellerian hormone type-2 receptor;(source:Araport11)
AT3G60590.1	protein_coding			cytochrome P450 family protein;(source:Araport11)
AT3G53310.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G01175.1	protein_coding	Protein of unknown function (DUF1666)		transmembrane protein;(source:Araport11)
AT3G01270.1	protein_coding	Pectate lyase family protein		Pectate lyase family protein;(source:Araport11)
AT3G01280.1	protein_coding	voltage dependent anion channel 1	Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol. The mRNA is cell-to-cell mobile.	voltage dependent anion channel 1;(source:Araport11)
AT3G35003.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G25655.1	protein_coding	inflorescence deficient in abscission (IDA)-like 1	Similar to Inflorescence Deficient in Abscission (IDA). Involved in floral organ abscission.	inflorescence deficient in abscission (IDA)-like 1;(source:Araport11)
AT3G54830.1	protein_coding	Transmembrane amino acid transporter family protein	Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G39130.1). Note that a different cDNA sequence has been reported (see Community Comments).	Transmembrane amino acid transporter family protein;(source:Araport11)
AT3G54820.1	protein_coding	plasma membrane intrinsic protein 2;5		plasma membrane intrinsic protein 2;(source:Araport11)
AT3G54810.1	protein_coding	Plant-specific GATA-type zinc finger transcription factor family protein	Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified.	Plant-specific GATA-type zinc finger transcription factor family protein;(source:Araport11)
AT3G56350.1	protein_coding	Iron/manganese superoxide dismutase family protein		Iron/manganese superoxide dismutase family protein;(source:Araport11)
AT3G56330.1	protein_coding	N2,N2-dimethylguanosine tRNA methyltransferase		N2,N2-dimethylguanosine tRNA methyltransferase;(source:Araport11)
AT3G56340.1	protein_coding	Ribosomal protein S26e family protein	Small ribosomal subunit protein.	Ribosomal protein S26e family protein;(source:Araport11)
AT3G45650.1	protein_coding	nitrate excretion transporter1	Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1).  Localized to the plasma membrane.  NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots.	nitrate excretion transporter1;(source:Araport11)
AT3G45660.1	protein_coding	Major facilitator superfamily protein	Encodes a member of the NAXT NPF subfamily.	Major facilitator superfamily protein;(source:Araport11)
AT3G45670.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G45640.1	protein_coding	mitogen-activated protein kinase 3	Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro. The mRNA is cell-to-cell mobile.	mitogen-activated protein kinase 3;(source:Araport11)
AT3G04070.1	protein_coding	NAC domain containing protein 47		NAC domain containing protein 47;(source:Araport11)
AT3G04060.1	protein_coding	NAC domain containing protein 46	NAC046 is a member of the NAC domain containing family of transcription factors. It was identified in a screen for regulators of chlorophyll protein gene expression. Mutants in NAC046 have delayed senescence and increased CHL content suggesting a role in regulation of senescence and chlorophyll degradation.	NAC domain containing protein 46;(source:Araport11)
AT3G10680.1	protein_coding	HSP20-like chaperones superfamily protein	SLI1 is a heat shock like protein that is found in sieve elements, sieve plates and spherical bodies peripheral to the mitochondria. Mutants show increased phloem feeding by aphids and decreased heat tolerance.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT3G10690.1	protein_coding	DNA GYRASE A	Encodes a protein that when expressed together with GYRB2 generates an active supercoiling DNA gyrase enzyme that shares similar properties to its bacterial counterpart, including sensitivity to gyrase-specific antibiotics.	DNA GYRASE A;(source:Araport11)
AT3G60330.1	protein_coding	H(+)-ATPase 7		H[+]-ATPase 7;(source:Araport11)
AT3G60340.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G06640.1	protein_coding	PAS domain-containing protein tyrosine kinase family protein		PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT3G06660.1	protein_coding	PAPA-1-like family protein / zinc finger (HIT type) family protein		PAPA-1-like family protein / zinc finger (HIT type) family protein;(source:Araport11)
AT3G06710.1	protein_coding			E3 ubiquitin ligase;(source:Araport11)
AT3G06680.1	protein_coding	Ribosomal L29e protein family		Ribosomal L29e protein family;(source:Araport11)
AT3G57590.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G57580.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G56650.1	protein_coding	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein		thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein);(source:Araport11)
AT3G56660.1	protein_coding	basic region/leucine zipper motif protein 49		basic region/leucine zipper motif protein 49;(source:Araport11)
AT3G56670.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT3G56930.1	protein_coding	DHHC-type zinc finger family protein	Protein S-acyl transferase 4 (PAT4). Mutants display defects in root hair elongation. Along with SCN1 , it may be involved in targeting of ROP2 to the plasma membrane.	DHHC-type zinc finger family protein;(source:Araport11)
AT3G56940.1	protein_coding	dicarboxylate diiron protein, putative (Crd1)	Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots.  Has a consensus carboxylate-bridged di-iron binding site. The mRNA is cell-to-cell mobile.	dicarboxylate diiron protein, putative (Crd1);(source:Araport11)
AT3G56960.1	protein_coding	phosphatidyl inositol monophosphate 5 kinase 4	Encodes a protein with phosphatidylinositol-4-phosphate 5-kinase activity that plays a role in pollen tip growth. The enzyme localizes to the apical plasma membrane and adjacent cytosolic region of pollen tubes. Overexpression of this gene leads to increased deposition of pectin in the cell wall at the tip of the pollen tube and causes altered pollen tube morphology.	phosphatidyl inositol monophosphate 5 kinase 4;(source:Araport11)
AT3G56970.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a member of the basic helix-loop-helix transcription factor family protein.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G56980.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a member of the basic helix-loop-helix transcription factor protein.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G56950.1	protein_coding	small and basic intrinsic protein 2;1	One of the Major Intrinsic Proteins(MIPs) which facilitate the passive transport of small molecules across membranes.Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER. Probably involved in the alleviation of ER stress; the lack of SIP2;1 reduces both pollen germination and pollen tube elongation.	small and basic intrinsic protein 2;(source:Araport11)
AT3G49670.1	protein_coding	Leucine-rich receptor-like protein kinase family protein	Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function.  Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. The mRNA is cell-to-cell mobile.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT3G49660.1	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a structural core component of a COMPASS-like H3K4 histone methylation complex.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G49680.1	protein_coding	branched-chain aminotransferase 3	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	branched-chain aminotransferase 3;(source:Araport11)
AT3G04790.1	protein_coding	Ribose 5-phosphate isomerase, type A protein		Ribose 5-phosphate isomerase, type A protein;(source:Araport11)
AT4G04970.1	protein_coding	glucan synthase-like 1	encodes a gene similar to callose synthase The mRNA is cell-to-cell mobile.	glucan synthase-like 1;(source:Araport11)
AT4G34265.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G32285.1	protein_coding	ENTH/ANTH/VHS superfamily protein	Putative clathrin assembly protein, component of TPLATE complex that functions in clathrin-mediated endocytosis.	ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT4G32105.1	protein_coding	Beta-1,3-N-Acetylglucosaminyltransferase family protein		Beta-1,3-N-Acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G31875.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G31985.1	protein_coding	Ribosomal protein L39 family protein		Ribosomal protein L39 family protein;(source:Araport11)
AT4G18975.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G18905.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G25835.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G00730.1	protein_coding	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein	Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development. Loss of function mutants have increased cell wall polysaccharide content.	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein;(source:Araport11)
AT4G28703.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT4G28706.1	protein_coding	pfkB-like carbohydrate kinase family protein		pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT4G23493.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G23496.1	protein_coding	SPIRAL1-like5	Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.	SPIRAL1-like5;(source:Araport11)
AT4G29285.1	protein_coding	low-molecular-weight cysteine-rich 24	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 24;(source:Araport11)
AT4G33945.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G33925.1	protein_coding		Encodes SSN2 (suppressor of sni1 2), a suppressor of SNI1 (AT4G18470).  SSN2 contains a SWIM (SWI2/SNF2 and MuDR) domain found in a variety of prokaryotic and eukaryotic proteins.  Involved in plant immune response and homologous recombination.	zinc finger SWIM domain protein;(source:Araport11)
AT4G33865.1	protein_coding	Ribosomal protein S14p/S29e family protein		Ribosomal protein S14p/S29e family protein;(source:Araport11)
AT4G33985.1	protein_coding	Protein of unknown function (DUF1685)		membrane insertase, putative (DUF1685);(source:Araport11)
AT4G33905.1	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT4G13235.1	protein_coding	embryo sac development arrest 21	Encodes a defensin-like (DEFL) family protein.	embryo sac development arrest 21;(source:Araport11)
AT4G13262.1	pseudogene			pseudogene of Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein;(source:Araport11)
AT4G13251.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 6.5e-48 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G13259.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 7.2e-42 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT4G13215.1	pseudogene			pseudogene of transmembrane kinase-like 1;(source:Araport11)
AT4G13258.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.9e-24 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G13261.1	protein_coding	Protein of unknown function (DUF784)		ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT4G13257.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 6.6e-40 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT4G13263.1	protein_coding	Protein of unknown function (DUF784)		ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT4G13256.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-29 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G13255.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.3e-41 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G13195.1	protein_coding	CLAVATA3/ESR-RELATED 44	Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini.  The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation.  TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770).  The protein is expressed in the vascular system and is involved in axillary bud formation.	CLAVATA3/ESR-RELATED 44;(source:Araport11)
AT4G13254.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.5e-28 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G13253.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.5e-42 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G13252.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-22 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G21605.1	pseudogene			pseudogene of Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G19985.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT4G38225.1	protein_coding			glycerol kinase;(source:Araport11)
AT4G38440.1	protein_coding		Encodes MINIYO (IYO), a positive regulator of transcriptional elongation that is essential for cells to initiate differentiation.	RPAP1-like, carboxy-terminal protein;(source:Araport11)
AT4G28395.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	related to lipid transfer proteins	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G28365.1	protein_coding	early nodulin-like protein 3		early nodulin-like protein 3;(source:Araport11)
AT4G36195.1	protein_coding	Serine carboxypeptidase S28 family protein		Serine carboxypeptidase S28 family protein;(source:Araport11)
AT4G10955.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G10925.1	protein_coding	Nuclear transport factor 2 (NTF2) family protein		Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT4G29030.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT4G32915.1	protein_coding			glutamyl-tRNA(Gln) amidotransferase subunit C;(source:Araport11)
AT4G27435.1	protein_coding	Protein of unknown function (DUF1218)		fiber (DUF1218);(source:Araport11)
AT4G34215.1	protein_coding	Domain of unknown function (DUF303) 	Encodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds.	carbohydrate esterase, putative (DUF303);(source:Araport11)
AT4G34138.1	protein_coding	UDP-glucosyl transferase 73B1		UDP-glucosyl transferase 73B1;(source:Araport11)
AT4G34135.1	protein_coding	UDP-glucosyltransferase 73B2	The At4g34135 gene encodes a flavonol 7-O-glucosyltransferase (EC 2.4.1.237) that glucosylates also with a 20 fold lower activity flavonols (kaempferol and quercetin) at the 3-O-position.	UDP-glucosyltransferase 73B2;(source:Araport11)
AT4G34000.1	protein_coding	abscisic acid responsive elements-binding factor 3	Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.	abscisic acid responsive elements-binding factor 3;(source:Araport11)
AT4G18465.1	protein_coding	RNA helicase family protein		RNA helicase family protein;(source:Araport11)
AT4G18395.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G18593.1	protein_coding	dual specificity protein phosphatase-related		dual specificity protein phosphatase-like protein;(source:Araport11)
AT4G18425.1	protein_coding	Protein of unknown function (DUF679)		transmembrane protein, putative (DUF679);(source:Araport11)
AT4G18596.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT4G31805.1	protein_coding	WRKY family transcription factor	Encodes POLAR, a scaffold protein associated with cellular asymmetry of meristemoids. Its transcript levels change after inducing MUTE expression in a mute background.	WRKY family transcription factor;(source:Araport11)
AT4G01026.1	protein_coding	PYR1-like 7	Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.  PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of ABI1 and ABI2.	PYR1-like 7;(source:Araport11)
AT4G01023.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G03156.1	protein_coding	small GTPase-related		small GTPase-like protein;(source:Araport11)
AT4G03205.1	protein_coding	Coproporphyrinogen III oxidase		Coproporphyrinogen III oxidase;(source:Araport11)
AT4G03153.1	protein_coding	Kinase interacting (KIP1-like) family protein		Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT4G00416.1	protein_coding	methyl-CPG-binding domain 3	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain 3;(source:Araport11)
AT4G00413.1	pseudogene			pseudogene of plasma membrane intrinsic protein 1;(source:Araport11)
AT4G00335.1	protein_coding	RING-H2 finger B1A		RING-H2 finger B1A;(source:Araport11)
AT4G00355.1	protein_coding		Encodes an Atg8-interacting protein that is partially associated with the ER during favorable growth conditions and becomes mainly associated with a spherical compartment that dynamically moves along the ER network.	mesoderm induction early response protein;(source:Araport11)
AT4G00234.1	protein_coding			mechanosensitive ion channel-like protein;(source:Araport11)
AT4G00236.1	pseudogene			pseudogene of Leucine-rich repeat transmembrane protein kinase protein;(source:Araport11)
AT4G00238.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator	STKL1 is a DUF domain containing DNA binding protein that may be involved in mediating certain glucose responses. Binds to promoter of PGR, a putative plasma membrane glucose response regulator.	DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT4G00305.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G37290.1	protein_coding		Encoding a precursor protein of a secreted peptide that is responsive to flg22 stimulus.	transmembrane protein;(source:Araport11)
AT4G37445.1	protein_coding			calcium ion-binding protein;(source:Araport11)
AT4G37295.1	protein_coding		Encodes an 86 AA polypeptide sequence that produces an 11 AA  secreted, bioactive peptide. It is induced by BD16. The peptide is bound by the RLK7 receptor kinase and inhibits the formation of lateral root founder cells. Homolog of prePIP1.	hypothetical protein;(source:Araport11)
AT4G30993.1	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT4G30996.1	protein_coding	Protein of unknown function (DUF1068)	NKS1, a plant-specific gene, encodes a 19 kDa endomembrane-localized protein. It is part of SOS independent ion homeostasis regulation pathway.	ubiquitin-associated protein (DUF1068);(source:Araport11)
AT4G30935.1	protein_coding	WRKY DNA-binding protein 32	member of WRKY Transcription Factor; Group I	WRKY DNA-binding protein 32;(source:Araport11)
AT4G00231.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G00225.1	pseudogene			pseudogene of Major facilitator superfamily protein;(source:Araport11)
AT4G00232.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT4G00585.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G21105.1	protein_coding	cytochrome-c oxidases;electron carriers		cytochrome-c oxidase/ electron carrier;(source:Araport11)
AT4G35725.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G16845.1	protein_coding	VEFS-Box of polycomb protein	The VERNALIZATION2 (VRN2) gene mediates vernalization and encodes a nuclear-localized zinc finger protein with similarity to Polycomb group (PcG) proteins of plants and animals. In wild-type Arabidopsis, vernalization results in the stable reduction of the levels of the floral repressor FLC. In vrn2 mutants, FLC expression is downregulated normally in response to vernalization, but instead of remaining low, FLC mRNA levels increase when plants are returned to normal temperatures. VRN2 maintains FLC repression after a cold treatment, serving as a mechanism for the cellular memory of vernalization. Required for complete repression of FLC. Required for the methylation of histone H3	VEFS-Box of polycomb protein;(source:Araport11)
AT4G14096.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G13985.1	protein_coding	FBD-associated F-box protein		FBD-associated F-box protein;(source:Araport11)
AT4G16155.1	protein_coding	dihydrolipoyl dehydrogenases		dihydrolipoamide dehydrogenase;(source:Araport11)
AT4G15093.1	protein_coding	catalytic LigB subunit of aromatic ring-opening dioxygenase family		catalytic LigB subunit of aromatic ring-opening dioxygenase family;(source:Araport11)
AT4G14965.1	protein_coding	membrane-associated progesterone binding protein 4		membrane-associated progesterone binding protein 4;(source:Araport11)
AT4G16265.1	protein_coding	RNA polymerases M/15 Kd subunit	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9.  Appears to be redundant with At3g16980	RNA polymerases M/15 Kd subunit;(source:Araport11)
AT4G14103.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G15975.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G17695.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT4G14716.1	protein_coding	acireductone dioxygenase 1	Encodes an acireductone dioxygenase that is activated by interaction with a heterotrimeric G protein beta subunit.  It is a metalloenzyme and is likely involved in the methionine salvage pathway.	acireductone dioxygenase 1;(source:Araport11)
AT4G16447.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G17785.1	protein_coding	myb domain protein 39	Encodes a putative transcription factor (MYB39).	myb domain protein 39;(source:Araport11)
AT4G15415.1	protein_coding	Protein phosphatase 2A regulatory B subunit family protein	B' regulatory subunit of PP2A (AtB'gamma)	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT4G16745.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT4G16146.1	protein_coding	cAMP-regulated phosphoprotein 19-related protein		cAMP-regulated phosphoprotein 19-related protein;(source:Araport11)
AT4G14385.1	protein_coding			histone acetyltransferase subunit NuA4-domain protein;(source:Araport11)
AT4G16444.1	protein_coding		GET1 membrane receptor homolog . ER localized protein that Interacts with GET3a. Disruption of both genes results in a decreased membrane localization of the SNARE proteinSYP123 and defects in root hair elongation.	tail-anchored protein insertion receptor WRB-like protein;(source:Araport11)
AT4G16563.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G15545.1	protein_coding		NAI1 interacting protein, involved in ER body formation.	PH-response transcription factor;(source:Araport11)
AT4G14815.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G15096.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G17245.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G14465.1	protein_coding	AT-hook motif nuclear-localized protein 20		AT-hook motif nuclear-localized protein 20;(source:Araport11)
AT4G14365.1	protein_coding	XB3 ortholog 4 in Arabidopsis thaliana		hypothetical protein;(source:Araport11)
AT4G14615.1	protein_coding			sporulation-specific protein;(source:Araport11)
AT4G16515.1	protein_coding		Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor;(source:Araport11)
AT4G16143.1	protein_coding	importin alpha isoform 2	Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	importin alpha isoform 2;(source:Araport11)
AT4G16566.1	protein_coding	histidine triad nucleotide-binding 4	Encodes a protein that has an unexpected bifunctional capability in vitro. The purified enzyme has  adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) and ADP-sulfurylase activity (E.C. 2.7.7.5). The latter is activated at low pH. The enzyme can exert it phosphorylase activity on a range of related substrates in vitro, but it acts best with APS (adenosine 5'-phsophosulfate). This protein appears to function as a homodimer.	histidine triad nucleotide-binding 4;(source:Araport11)
AT4G16442.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G17215.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT4G14605.1	protein_coding	Mitochondrial transcription termination factor family protein	Encodes a putative mitochondrial transcription termination factor whose mutation results in plants that exhibit altered chloroplast morphology and plant growth, and reduced pigmentation of cotyledons, leaves, stems and sepals.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT4G14695.1	protein_coding	Uncharacterised protein family (UPF0041)		Uncharacterized protein family (UPF0041);(source:Araport11)
AT4G14713.1	protein_coding	TIFY domain/Divergent CCT motif family protein	PPD1 (and its paralog, PPD2) encode plant-specific putative DNA-binding proteins. PPD1 and PPD2 are not found in grasses. Overexpression of PPD reduces lamina size by promoting the early arrest of dispersed meristematic cells DMC proliferation during leaf and silique development. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth. The curvature of a deltappd leaf reflects the difference between excess growth of the lamina and a limitation to the extension capacity of its perimeter.	TIFY domain/Divergent CCT motif family protein;(source:Araport11)
AT4G15475.1	protein_coding	F-box/RNI-like superfamily protein	Contributes to UV tolerance through nucleotide excision repair.	F-box/RNI-like superfamily protein;(source:Araport11)
AT4G30825.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	P-class pentatricopeptide repeat (PPR) protein essential for accumulation of the dicistronic atpH/F transcript in chloroplasts. Acts as barrier to prevent the atpH/F transcript degradation by exoribonucleases by binding to the consensus sequence of the atpF-atpA intergenic region.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G22165.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT4G22214.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT4G22212.1	protein_coding	Arabidopsis defensin-like protein	Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT4G22185.1	pseudogene			pseudogene of F-box protein (DUF295);(source:Araport11)
AT4G22217.1	protein_coding	Arabidopsis defensin-like protein	Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT4G22235.1	protein_coding	Arabidopsis defensin-like protein	Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT4G02075.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT4G22745.1	protein_coding	methyl-CPG-binding domain 1	Protein containing methyl-CpG-binding domain.	methyl-CPG-binding domain 1;(source:Araport11)
AT4G22756.1	protein_coding	sterol C4-methyl oxidase 1-2	Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase. Works together with SMO1-1 to maintain correct sterol composition and balance auxin and cytokinin activities during embryogenesis.	sterol C4-methyl oxidase 1-2;(source:Araport11)
AT4G28025.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G28085.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G02485.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G26555.1	protein_coding	FKBP-like peptidyl-prolyl cis-trans isomerase family protein		FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G33565.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G33666.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G29735.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G00955.1	protein_coding			wall-associated receptor kinase-like protein;(source:Araport11)
AT4G00895.1	protein_coding	ATPase, F1 complex, OSCP/delta subunit protein		ATPase, F1 complex, OSCP/delta subunit protein;(source:Araport11)
AT4G00755.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G19185.1	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G19095.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G24175.1	protein_coding			kinesin-like protein;(source:Araport11)
AT4G36105.1	protein_coding			polyamine-modulated factor 1-binding protein;(source:Araport11)
AT4G35985.1	protein_coding	Senescence/dehydration-associated protein-related		Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT4G35905.1	protein_coding			Trm112p-like protein;(source:Araport11)
AT4G39756.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G39753.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G39675.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G04955.1	protein_coding	allantoinase	Encodes an allantoinase which is involved in allantoin degradation and assimilation. Gene expression was induced when allantoin was added to the medium. The insertion mutant, ataln m2-1, did not grow well on the MS medium where allantoin, instead of ammonium nitrate, was supplied.	allantoinase;(source:Araport11)
AT4G39235.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G09560.1	protein_coding	Protease-associated (PA) RING/U-box zinc finger family protein		Protease-associated (PA) RING/U-box zinc finger family protein;(source:Araport11)
AT4G27652.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G27654.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G27657.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G27585.1	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family	Encodes a stomatin-like protein that is present in a mitochondrial membrane-bound 3 MDa protein complex and is involved in the assembly of mitochondrial respiratory supercomplexes.  There is an observed increase in abundance of respiratory complex III2 in SLP1 single and double knockout mutants. The protein is not redundant with Arabidopsis SLP2 (At5g54100).	SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT4G02195.1	protein_coding	syntaxin of plants 42	Encodes a member of SYP4 Gene Family that is a plant ortholog of the Tlg2/syntaxin16 Qa-SNARE.  Together with SYP43, it regulates the secretory and vacuolar transport pathways in the post-Golgi network and maintains the morphology of the Golgi apparatus and TGN and is required for extracellular resistance responses to a fungal pathogen.	syntaxin of plants 42;(source:Araport11)
AT4G25500.1	protein_coding	arginine/serine-rich splicing factor 35	Encodes an arginine/serine-rich splicing factor. The transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS40 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis (DOI:10.1093/nar/gkv751).	arginine/serine-rich splicing factor 35;(source:Araport11)
AT4G25490.1	protein_coding	C-repeat/DRE binding factor 1	Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.	C-repeat/DRE binding factor 1;(source:Araport11)
AT4G25450.1	protein_coding	non-intrinsic ABC protein 8	member of NAP subfamily	non-intrinsic ABC protein 8;(source:Araport11)
AT4G25470.1	protein_coding	C-repeat/DRE binding factor 2	Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.	C-repeat/DRE binding factor 2;(source:Araport11)
AT4G25440.1	protein_coding	zinc finger WD40 repeat protein 1		zinc finger WD40 repeat protein 1;(source:Araport11)
AT4G25430.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G25510.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G25480.1	protein_coding	dehydration response element B1A	Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.	dehydration response element B1A;(source:Araport11)
AT4G23885.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G07515.1	protein_coding	Protein of unknown function (DUF784)		ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT4G08580.1	protein_coding	microfibrillar-associated protein-related		microfibrillar-associated protein-like protein;(source:Araport11)
AT4G08685.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein	Encodes a protein, expressed in leaves, with similarity to pollen allergens. The mRNA is cell-to-cell mobile.	Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT4G34555.1	protein_coding	Ribosomal protein S25 family protein		Ribosomal protein S25 family protein;(source:Araport11)
AT4G39955.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G40045.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G17895.1	protein_coding	ubiquitin-specific protease 20	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 20;(source:Araport11)
AT4G21323.1	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G21326.1	protein_coding	subtilase 3.12		subtilase 3.12;(source:Araport11)
AT4G01895.1	protein_coding	systemic acquired resistance (SAR) regulator protein NIMIN-1-related		systemic acquired resistance (SAR) regulator protein NIMIN-1-like protein;(source:Araport11)
AT4G21865.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G10230.1	protein_coding			no-apical-meristem-associated carboxy-terminal domain protein;(source:Araport11)
AT4G10200.1	protein_coding	TTF-type zinc finger protein with HAT dimerisation domain		TTF-type zinc finger protein with HAT dimerization domain-containing protein;(source:Araport11)
AT4G10140.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G10130.1	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT4G10250.1	protein_coding	HSP20-like chaperones superfamily protein	Columbia endomembrane-localized small heat shock protein	HSP20-like chaperones superfamily protein;(source:Araport11)
AT4G10240.1	protein_coding	B-box zinc finger family protein		B-box zinc finger family protein;(source:Araport11)
AT4G10310.1	protein_coding	high-affinity K+ transporter 1	encodes a sodium transporter (HKT1) expressed in xylem parenchyma cells. Mutants over-accumulate sodium in shoot tissue and have increased sodium in the xylem sap and reduced sodium in phloem sap and roots.	high-affinity K+ transporter 1;(source:Araport11)
AT4G10150.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G10260.1	protein_coding	pfkB-like carbohydrate kinase family protein	Encodes a member of the fructokinase gene family.  Nomenclature according to Riggs 2017 has been adopted for the family by the community (personal communication, Boernke, Callis, Granot, Boernke, and Smeekens).	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT4G10160.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G10270.1	protein_coding	Wound-responsive family protein	Member of the wound-induced polypeptide (WIP) family.	Wound-responsive family protein;(source:Araport11)
AT4G10170.1	protein_coding	SNARE-like superfamily protein		SNARE-like superfamily protein;(source:Araport11)
AT4G10290.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT4G10220.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT4G10280.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT4G10300.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT4G10180.1	protein_coding	light-mediated development protein 1 / deetiolated1 (DET1)	Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling. The mRNA is cell-to-cell mobile.	light-mediated development protein 1 / deetiolated1 (DET1);(source:Araport11)
AT4G10190.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G13345.1	protein_coding	Serinc-domain containing serine and sphingolipid biosynthesis protein		Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT5G03555.1	protein_coding	permease, cytosine/purines, uracil, thiamine, allantoin family protein	Encodes PLUTO (plastidic nucleobase transporter), a member of the Nucleobase:Cation-Symporter1 protein family, capable of transporting purine and pyrimidine nucleobases.	permease, cytosine/purines, uracil, thiamine, allantoin family protein;(source:Araport11)
AT5G03345.1	protein_coding			membrane magnesium transporter-like protein;(source:Araport11)
AT5G03455.1	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein	Encodes a homolog of yeast cell cycle regulator CDC25.  It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast.  Non-plant CDC25 proteins have been shown to do this.  However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance.	Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT5G32267.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-229 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32280.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.6e-123 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT5G32254.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.7e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32241.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32215.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.6e-306 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32228.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32345.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.2e-183 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32293.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-314 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32306.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF2 -related, contains similarity to gi:806534;(source:TAIR10)
AT5G15725.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G27940.1	protein_coding	WPP domain protein 3		WPP domain protein 3;(source:Araport11)
AT5G27945.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G38035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.9e-71 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G33390.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT5G25415.1	protein_coding	Protein of Unknown Function (DUF239)		hypothetical protein (DUF239);(source:Araport11)
AT5G25470.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G32386.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.7e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32358.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.1e-59 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii);(source:TAIR10)
AT5G18290.1	protein_coding	Aquaporin-like superfamily protein	Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER	Aquaporin-like superfamily protein;(source:Araport11)
AT5G26731.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G20885.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G20935.1	protein_coding			DUF3148 family protein;(source:Araport11)
AT5G36650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13320.1);(source:TAIR10)
AT5G36737.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G36740.1	protein_coding	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein		Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT5G19875.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G16715.1	protein_coding	ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases		protein EMBRYO DEFECTIVE 2247;(source:Araport11)
AT5G01075.1	protein_coding	Glycosyl hydrolase family 35 protein	Encodes a small ER-localized protein that is strongly expressed in seeds and regulates both embryo development and accumulation of storage compounds. At the cellular level, TWS1 is responsible for cuticle deposition on epidermal cells and organization of the endomembrane system.	Glycosyl hydrolase family 35 protein;(source:Araport11)
AT5G01015.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G08415.1	protein_coding	Radical SAM superfamily protein		Radical SAM superfamily protein;(source:Araport11)
AT5G08335.1	protein_coding	Isoprenylcysteine carboxyl methyltransferase (ICMT) family 	Encodes an  isoprenyl cysteine methylatransferase (ICMT) involved in the post-translational processing of proteins that have a C-terminal CaaX box. This protein appears to have higher catalytic activity and a higher transcript expression level than the other ICMT present in Arabidopsis (At5g23320). Analysis of ICMT RNAi lines suggests that this protein is involved in flower and stem development.	Isoprenylcysteine carboxyl methyltransferase (ICMT) family;(source:Araport11)
AT5G26200.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G61605.1	protein_coding			EMBRYO SURROUNDING FACTOR-like protein;(source:Araport11)
AT5G24165.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G38895.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G48655.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G06070.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Isolated as a mutation defective in petal development with specific effects on  adaxial petals which  are filamentous or absent. Encodes a Superman (SUP) like protein with zinc finger motifs. Transcript is detected in petal primordia and protein is localized to the nucleus.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G62575.1	protein_coding		Encodes subunit 7 of mitochondrial complex II (succinate dehydrogenase complex) and participates in the respiratory chain. It contributes to anchoring succinate dehydrogenase to the inner mitochondrial membrane. The mRNA is cell-to-cell mobile.	succinate dehydrogenase subunit;(source:Araport11)
AT5G23405.1	protein_coding	HMG-box (high mobility group) DNA-binding family protein		HMG-box (high mobility group) DNA-binding family protein;(source:Araport11)
AT5G40510.1	protein_coding	Sucrase/ferredoxin-like family protein		Sucrase/ferredoxin-like family protein;(source:Araport11)
AT5G44785.1	protein_coding	organellar single-stranded DNA binding protein 3	Organellar Single-stranded DNA Binding protein. Decreases MMEJ on long ssDNA templates.	organellar single-stranded DNA binding protein 3;(source:Araport11)
AT5G43210.1	protein_coding	Excinuclease ABC, C subunit, N-terminal		Excinuclease ABC, C subunit, N-terminal;(source:Araport11)
AT5G48900.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G66055.1	protein_coding	ankyrin repeat protein	A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	ankyrin repeat protein;(source:Araport11)
AT5G50915.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G49555.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT5G66985.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G49945.1	protein_coding	Protein of unknown function (DUF1682)		hypothetical protein (DUF1682);(source:Araport11)
AT5G61865.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G08535.1	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT5G08565.1	protein_coding	Transcription initiation Spt4-like protein		Transcription initiation Spt4-like protein;(source:Araport11)
AT5G10695.1	protein_coding			methionyl-tRNA synthetase;(source:Araport11)
AT5G50470.1	protein_coding	nuclear factor Y, subunit C7		nuclear factor Y, subunit C7;(source:Araport11)
AT5G50460.1	protein_coding	secE/sec61-gamma protein transport protein		secE/sec61-gamma protein transport protein;(source:Araport11)
AT5G42955.1	protein_coding	Protein of unknown function (DUF784)		inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT5G54855.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G41685.1	protein_coding	Mitochondrial outer membrane translocase complex, subunit Tom7		Mitochondrial outer membrane translocase complex, subunit Tom7;(source:Araport11)
AT5G58375.1	protein_coding	Methyltransferase-related protein		Methyltransferase-related protein;(source:Araport11)
AT5G46115.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G63135.1	protein_coding			transcription termination factor;(source:Araport11)
AT5G12270.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G12360.1	protein_coding		Encodes a protein that protects meiotic centromere cohesion.	hypothetical protein;(source:Araport11)
AT5G12280.1	protein_coding	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein;(source:Araport11)
AT5G12370.1	protein_coding	exocyst complex component sec10		exocyst complex component sec10;(source:Araport11)
AT5G12290.1	protein_coding	dgd1 suppressor 1	Encodes a mitochondrial outer membrane protein, involved in galactoglycerolipid biosynthesis. The dgd1 mutant phenotype is suppressed in the dgs1 mutant background.	dgd1 suppressor 1;(source:Araport11)
AT5G12460.1	protein_coding	Protein of unknown function (DUF604)		fringe-like protein (DUF604);(source:Araport11)
AT5G12380.1	protein_coding	annexin 8		annexin 8;(source:Araport11)
AT5G12300.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G12470.1	protein_coding	Protein of unknown function (DUF3411)		UvrABC system C protein, putative (DUF3411);(source:Araport11)
AT5G12310.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G12390.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G12480.1	protein_coding	calmodulin-domain protein kinase 7	calmodulin-domain protein kinase CDPK isoform 7 (CPK7)	calmodulin-domain protein kinase 7;(source:Araport11)
AT5G12320.1	protein_coding	ankyrin repeat family protein		ankyrin repeat family protein;(source:Araport11)
AT5G12400.1	protein_coding	DNA binding;zinc ion binding;DNA binding		PHD-finger and DNA binding domain-containing protein;(source:Araport11)
AT5G12330.1	protein_coding	Lateral root primordium (LRP) protein-related	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin.  SWP1 is involved in the repression of LRP1 via histone deacetylation.	Lateral root primordium (LRP) protein-like protein;(source:Araport11)
AT5G12410.1	protein_coding	THUMP domain-containing protein		THUMP domain-containing protein;(source:Araport11)
AT5G12340.1	protein_coding			DUF4228 domain protein;(source:Araport11)
AT5G12420.1	protein_coding	O-acyltransferase (WSD1-like) family protein		O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT5G12350.1	protein_coding	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain		Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT5G12430.1	protein_coding	Heat shock protein DnaJ with tetratricopeptide repeat	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Heat shock protein DnaJ with tetratricopeptide repeat-containing protein;(source:Araport11)
AT5G12440.1	protein_coding	CCCH-type zinc fingerfamily protein with RNA-binding domain		CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT5G12450.1	protein_coding	FBD-like domain family protein		FBD-like domain family protein;(source:Araport11)
AT5G03905.1	protein_coding	Iron-sulphur cluster biosynthesis family protein		Iron-sulfur cluster biosynthesis family protein;(source:Araport11)
AT5G51460.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G63905.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G06265.1	protein_coding	hyaluronan mediated motility receptor-related		hyaluronan mediated motility receptor-like protein;(source:Araport11)
AT5G48290.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G48175.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G42765.1	protein_coding			plasma membrane fusion protein;(source:Araport11)
AT5G57345.1	protein_coding		OXR is a single copy gene in Arabidopsis. It is localized to the ER. It is expressed throughout the plant and expression is induced in response to abiotic stress. While the function of OXR is unknown, overexpression results in increased abiotic stress tolerance and increased ascorbic acid content.	transmembrane protein;(source:Araport11)
AT5G48485.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica. DIR1 protein is cell-to-cell mobile and is transported via phloem sap.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G37055.1	protein_coding	HIT-type Zinc finger family protein	Encodes SERRATED LEAVES AND EARLY FLOWERING (SEF), an Arabidopsis homolog of the yeast SWC6 protein, a conserved subunit of the SWR1/SRCAP complex. SEF loss-of-function mutants have a pleiotropic phenotype characterized by serrated leaves, frequent absence of inflorescence internodes, bushy aspect, and flowers with altered number and size of organs. sef plants flower earlier than wild-type plants both under inductive and non-inductive photoperiods. SEF, ARP6 and PIE1 might form a molecular complex in Arabidopsis related to the SWR1/SRCAP complex identified in other eukaryotes.	HIT-type Zinc finger family protein;(source:Araport11)
AT5G05870.1	protein_coding	UDP-glucosyl transferase 76C1		UDP-glucosyl transferase 76C1;(source:Araport11)
AT5G05890.1	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a nicotinate-N-glycosyltransferase.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G54095.1	protein_coding			proteoglycan-like protein;(source:Araport11)
AT5G39785.1	protein_coding	Protein of unknown function (DUF1666)		hypothetical protein (DUF1666);(source:Araport11)
AT5G40980.1	protein_coding	Protein of unknown function (DUF 3339)		AT.I.24-6 protein, putative (DUF 3339);(source:Araport11)
AT5G59845.1	protein_coding	Gibberellin-regulated family protein	Member of a family of proteins named as being GA inducible but GASA10 does not appear to be GA induced. It is likely to be secreted as the protein is found in the cell wall.	Gibberellin-regulated family protein;(source:Araport11)
AT5G59305.1	protein_coding			CLAVATA 3/ESR (CLE)-like protein;(source:Araport11)
AT5G40645.1	protein_coding	RPM1-interacting protein 4 (RIN4) family protein		RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT5G47635.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G47455.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G24313.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G24316.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT5G65685.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G46295.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G43745.1	protein_coding	Protein of unknown function (DUF1012)		ion channel POLLUX-like protein, putative (DUF1012);(source:Araport11)
AT5G22555.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G16505.1	transposable_element_gene		Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1), AT2G30640 (MUG2), AT1G06740 (MUG3), AT5G16505 (MUG4), AT3G06940 (MUG5), AT5G48965 (MUG6), AT3G05850 (MUG7) and AT5G34853 (MUG8).	transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-59 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G47435.1	protein_coding	formyltetrahydrofolate deformylase, putative	encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.	formyltetrahydrofolate deformylase;(source:Araport11)
AT5G65205.1	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G45775.1	protein_coding	Ribosomal L5P family protein		Ribosomal L5P family protein;(source:Araport11)
AT5G22875.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G23860.1	protein_coding	tubulin beta 8	beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers. The mRNA is cell-to-cell mobile.	tubulin beta 8;(source:Araport11)
AT5G46860.1	protein_coding	Syntaxin/t-SNARE family protein	Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164?220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic.	Syntaxin/t-SNARE family protein;(source:Araport11)
AT5G40155.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G62165.1	protein_coding	AGAMOUS-like 42	Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT5G16570.1	protein_coding	glutamine synthetase 1;4	Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	glutamine synthetase 1;(source:Araport11)
AT5G57815.1	protein_coding	Cytochrome c oxidase, subunit Vib family protein		Cytochrome c oxidase, subunit Vib family protein;(source:Araport11)
AT5G57785.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G57655.1	protein_coding	xylose isomerase family protein		xylose isomerase family protein;(source:Araport11)
AT5G14105.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G66815.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G04930.1	protein_coding	aminophospholipid ATPase 1	Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response.  It is targeted to the plasma membrane following association in the endoplasmic reticulum with an ALIS protein beta-subunit. The mRNA is cell-to-cell mobile.	aminophospholipid ATPase 1;(source:Araport11)
AT5G43380.1	protein_coding	type one serine/threonine protein phosphatase 6	encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.	type one serine/threonine protein phosphatase 6;(source:Araport11)
AT5G38195.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G24655.1	protein_coding	response to low sulfur 4		response to low sulfur 4;(source:Araport11)
AT5G52975.1	protein_coding	Protein of unknown function (DUF1278)		egg cell-secreted-like protein (DUF1278);(source:Araport11)
AT5G35735.1	protein_coding	Auxin-responsive family protein		Auxin-responsive family protein;(source:Araport11)
AT5G50335.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G50315.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.0e-14 P-value blast match to Q9XE24 /118-277 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G50375.1	protein_coding	cyclopropyl isomerase	Converts pentacyclic cyclopropyl sterols to conventional tetracyclic sterols. CPI1 function during and just after division and  support gravitropism by establishing polar PIN2 localization. Required for endocytosis of PIN2	cyclopropyl isomerase;(source:Araport11)
AT5G64816.1	protein_coding		Thionin-like gene.	thionin-like protein;(source:Araport11)
AT5G64905.1	protein_coding	elicitor peptide 3 precursor		elicitor peptide 3 precursor;(source:Araport11)
AT5G64813.1	protein_coding	Ras-related small GTP-binding family protein	The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis. The mRNA is cell-to-cell mobile.	Ras-related small GTP-binding family protein;(source:Araport11)
AT5G09995.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G46795.1	protein_coding	microspore-specific  promoter 2		microspore-specific promoter 2;(source:Araport11)
AT5G58784.1	protein_coding	Undecaprenyl pyrophosphate synthetase family protein		Undecaprenyl pyrophosphate synthetase family protein;(source:Araport11)
AT5G58575.1	protein_coding		Component of the deubiquitination module of the SAGA complex.	SAGA-associated factor-like protein;(source:Araport11)
AT5G58782.1	protein_coding	Undecaprenyl pyrophosphate synthetase family protein		Undecaprenyl pyrophosphate synthetase family protein;(source:Araport11)
AT5G58787.1	protein_coding	RING/U-box superfamily protein	Encodes a cytosolic protein with E3 ligase activity that is involved in positive regulation of ABA responses.	RING/U-box superfamily protein;(source:Araport11)
AT5G21105.1	protein_coding	Plant L-ascorbate oxidase		Plant L-ascorbate oxidase;(source:Araport11)
AT5G25475.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G19270.1	protein_coding			reverse transcriptase-like protein;(source:Araport11)
AT5G19855.1	protein_coding	Chaperonin-like RbcX protein	Encodes a chloroplast stromal localized RbcX protein that acts as a chaperone in the folding of Rubisco.	Chaperonin-like RbcX protein;(source:Araport11)
AT5G08740.1	protein_coding	NAD(P)H dehydrogenase C1	Encodes a dedicated Type II NADPH dehydrogenase that catalyzes the penultimate step in phylloquinone (vitamin K1). biosynthesis	NAD(P)H dehydrogenase C1;(source:Araport11)
AT5G08750.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G08690.1	protein_coding	ATP synthase alpha/beta family protein	Encodes the mitochondrial ATP synthase beta-subunit.  This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level. The mRNA is cell-to-cell mobile.	ATP synthase alpha/beta family protein;(source:Araport11)
AT5G08670.1	protein_coding	ATP synthase alpha/beta family protein	Encodes the mitochondrial ATP synthase beta-subunit.  This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.	ATP synthase alpha/beta family protein;(source:Araport11)
AT5G34885.1	protein_coding	Protein of unknown function (DUF784)		inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT5G24800.1	protein_coding	basic leucine zipper 9	Encodes bZIP protein BZO2H2.	basic leucine zipper 9;(source:Araport11)
AT5G22000.1	protein_coding	RING-H2 group F2A	encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.	RING-H2 group F2A;(source:Araport11)
AT5G22060.1	protein_coding	DNAJ homologue 2	Co-chaperonin similar to E. coli DnaJ	DNAJ homologue 2;(source:Araport11)
AT5G22030.1	protein_coding	ubiquitin-specific protease 8		ubiquitin-specific protease 8;(source:Araport11)
TTN4	protein_coding		Genetic locus involved in seed development.  Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to SAG18, nor does it correspond to At1G71190, even though this has been stated previously in a publication.	
ARC2	unknown		mutant has altered chloroplast division and expansion	
ARC10	unknown		A genetic locus involved in chloroplast development. Mesophyll cell chloroplasts in mutants are highly heterogeneous in size within a single cell.	
ARC4	unknown		A genetic locus involved in chloroplast development	
ARC7	unknown		This locus involved in chloroplast development. Lines carrying recessive mutations in this locus have larger number of smaller chloroplasts	
ARC8	unknown		A genetic locus involved in chloroplast development	
ARC9	unknown		A genetic locus involved in chloroplast development	
CER12	unknown		a genetic locus involved in cuticular wax biosynthesis. Lines carrying a recessive mutation have semi-glaucous stem surface and reduced wax load. This locus is genetically mapped to chr 4 at 61.6 cM.	
CER13	unknown		a genetic locus involved in cuticular wax biosynthesis. Lines carrying recessive mutations have increased chain-length distribution, semi-glaucous stem surface, and fused floral organs. This locus is genetically mapped to chr 3 at 66.2 cM.	
CER14	unknown		a genetic locus involved in cuticular wax biosynthesis. Lines carrying a recessive mutation have semi-glaucous stem surface and reduced wax load. This locus is genetically mapped to chr 2 at 29.0 cM.	
CER15	unknown		a genetic locus involved in cuticular wax biosynthesis. Mutants carrying recessive mutation in this gene have slight wax load reduction with relatively reduced secondary alcohols and ketones. This locus is genetically mapped on chr 3 at 82.7 cM. Stem surface is semi-glaucous and there are no apparent pleiotropic effects.	
CER16	unknown		a genetic locus involved in cuticular wax biosynthesis. Lines carrying recessive mutations have increased chain-length distribution, semi-glaucous stem surface, and no apparent pleiotropic effects. This locus is genetically mapped to chr 2 at 30.3 cM.	
CER17	unknown		a genetic locus involved in cuticular wax biosynthesis. Mutants carrying recessive mutation in this gene have slight wax load reduction with relatively reduced secondary alcohols and ketones. This locus is genetically mapped on chr 1 at 99.3 cM. Stem surface is semi-glaucous and there are no apparent pleiotropic effects.	
CER18	unknown		a genetic locus involved in cuticular wax biosynthesis. Lines carrying a recessive mutation have semi-glaucous stem surface and reduced wax load. This locus is genetically mapped to chr 5 at 138.1 cM.	
CER19	unknown		a genetic locus involved in cuticular wax biosynthesis. Lines carrying a recessive mutation in this locus has reduced chain-length distribution, semi-glaucous stem surface, and has no apparent pleiotropic effects. This locus is mapped on chr 1 at 72.7 cM.	
CER20	unknown		a genetic locus involved in cuticular wax biosynthesis. Mutants carrying recessive mutation in this gene have slight wax load reduction with relatively reduced secondary alcohols and ketones. This locus is genetically mapped on chr 5 at 62.1 cM. Stem surface is semi-glaucous and there are no apparent pleiotropic effects.	
AT5G22130.1	protein_coding	mannosyltransferase family protein	member of Glycosyltransferase Family- 50	mannosyltransferase family protein;(source:Araport11)
EGS2	unknown		a genetic locus involved in silencing of transgenes. Mutants carrying a recessive allele enhances the silencing of 35S::rolB transgene in Arabidopsis.	
FAE2	unknown		A genetic locus involved in fatty acid elongation	
GAR1	unknown		Suppresses Gibberellin insensitive phenotype of GAI. This locus is closely linked to the GAI locus.	
GAR3	unknown		Suppresses Gibberellin insensitive phenotype of GAI	
GAR4	unknown		Suppresses Gibberellin insensitive phenotype of GAI	
GAR5	unknown		Suppresses Gibberellin insensitive phenotype of GAI	
GAR6	unknown		Suppresses Gibberellin insensitive phenotype of GAI	
GAR7	unknown		Suppresses Gibberellin insensitive phenotype of GAI	
GAR8	unknown		Suppresses Gibberellin insensitive phenotype of GAI	
GAR9	unknown		Suppresses Gibberellin insensitive phenotype of GAI	
GPX	unknown		Mutants defective in the formation of secondary cell walls, leading to gaps in place of xylem elements.	
PUP1	unknown		a mendelian genetic locus involved in response to reduced levels of phosphorus. T-DNA lines carrying a semi-dominant mutation exhibit lack of induction of an acid phosphatase isoform. Genetically mapped on chr 2 near GPA1, between 34.0 cM and 54.8 cM.	
AT5G33204.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.9e-99 P-value blast match to F11B20 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT5G33207.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-122 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G33253.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.9e-29 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G33223.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT5G33252.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.1e-311 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G33232.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.0e-81 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G33251.1	pseudogene			pseudogene of Beta-galactosidase related protein;(source:Araport11)
AT5G33237.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.8e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G33234.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 3.1e-153 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT5G33175.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.0e-31 P-value blast match to GB:BAA01703 ORF (Ty1_Copia-element) (Drosophila simulans);(source:TAIR10)
AT5G33254.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT5G33257.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT5G33258.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT5G33226.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.3e-256 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G33202.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein;(source:TAIR10)
AT5G33255.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G33259.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to mutator-like transposase, putative;(source:TAIR10)
AT5G33285.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Hypothetical protein with similarity to putative Ac-like transposases, similar to Ac-like transposase;(source:TAIR10)
AT5G33256.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.7e-218 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G28523.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 8.9e-31 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT5G28535.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mariner-like transposase family, has a 1.2e-97 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max);(source:TAIR10)
AT5G28526.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 7.1e-289 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT5G35353.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.4e-44 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G35331.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.8e-44 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT5G35356.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative copia-like polyprotein, similar to transposon related protein;(source:TAIR10)
AT5G35336.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to SAE1-S9-protein, similar to putative non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT5G35334.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.3e-50 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G35332.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative reverse transcriptase;(source:TAIR10)
AT5G37415.1	protein_coding	AGAMOUS-like 105	Encodes a MADS-box gene AGL105 (AGAMOUS-LIKE 105). Note that previous reports (Plant Cell 2003,15:1538; PNAS 2003, 100:13407) have incorrectly named AT5G37420 as AGL105.  Current nomenclature is based on Plant Cell 2003, 15:1538 where the GenBank accession number given for AGL105 is AY141227 (Supplemental Table 3), which corresponds to AT5G37415.	AGAMOUS-like 105;(source:Araport11)
AT5G37385.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47320.1);(source:TAIR10)
AT5G35145.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, PF03078: ATHILA ORF-1 family;(source:TAIR10)
AT5G35205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.1e-36 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT5G28065.1	transposable_element_gene	transposable element gene	CACTA-like transposase family (En/Spm), has a 6.4e-100 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon= Shooter  (Zea mays)	transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 6.4e-100 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT5G28085.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.5e-13 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT5G28145.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.1e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT5G28165.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 3.1e-142 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT5G02502.1	protein_coding	Oligosaccaryltransferase		Oligosaccaryltransferase;(source:Araport11)
AT5G16285.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G20635.1	protein_coding		Encodes an atypical heterotrimeric G-protein gamma-subunit involved in guard cell K+-channel regulation and morphological development.	guanine nucleotide-binding protein subunit gamma;(source:Araport11)
AT5G27845.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.6e-32 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT5G19097.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.4e-284 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G32488.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, temporary automated functional assignment;(source:TAIR10)
AT5G32482.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G33303.1);(source:TAIR10)
AT5G32511.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32486.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-178 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32505.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.7e-299 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32495.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32484.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.9e-125 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT5G32512.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.1e-290 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32513.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-250 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32481.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.5e-294 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32475.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF2 -related;(source:TAIR10)
AT5G25425.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT5G25615.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.0e-122 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT5G25045.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.9e-186 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata);(source:TAIR10)
AT5G28615.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT5G28545.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.7e-08 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT5G28593.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.6e-78 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G28596.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.8e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G39865.1	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT5G41315.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix loop helix domain protein that interacts with GL1 in trichome development.GL3 interacts with JAZ and DELLA proteins to regulate trichome initiation.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G38386.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G38365.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.0e-32 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G38435.1	protein_coding	S-protein homologue 8	self-incompatibility (S) protein homolog, expressed at low levels in floral buds and very low levels in other plant tissues	S-protein homologue 8;(source:Araport11)
AT5G38393.1	pseudogene			pseudogene of F-box/RNI-like superfamily protein;(source:Araport11)
AT5G38383.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.9e-185 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G35775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G38396.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G35753.1	protein_coding	Domain of unknown function (DUF3444)		DnaJ heat shock amino-terminal domain protein (DUF3444);(source:Araport11)
AT5G35725.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.2e-39 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT5G35720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.9e-12 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT5G35715.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 8	encodes a protein with cytochrome P450 domain	cytochrome P450, family 71, subfamily B, polypeptide 8;(source:Araport11)
AT5G35695.1	protein_coding			nuclease HARBI1-like protein;(source:Araport11)
AT5G35756.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.3e-30 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT5G39095.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.1e-250 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT5G39155.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.0e-190 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G12235.1	protein_coding	CLAVATA3/ESR-RELATED 22	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. Can partially replace CLV3 function in vivo.	CLAVATA3/ESR-RELATED 22;(source:Araport11)
AT5G52965.1	protein_coding	Protein of unknown function (DUF1278)		egg cell-secreted-like protein (DUF1278);(source:Araport11)
AT5G38192.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.6e-236 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G55896.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.7e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G55855.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G55893.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G55875.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.4e-191 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata);(source:TAIR10)
AT5G43415.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.5e-36 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G43405.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43940.1);(source:TAIR10)
AT5G22355.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G51105.1	protein_coding	Protein of unknown function (DUF1278)		ECA1 gametogenesis family protein (DUF1278);(source:Araport11)
AT5G51195.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT5G17725.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.9e-07 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT5G57126.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.2e-282 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G57123.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G04885.1	protein_coding	Glycosyl hydrolase family protein	Encodes a beta-glucosidase involved in xyloglucan metabolism.	Glycosyl hydrolase family protein;(source:Araport11)
AT5G41755.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.5e-36 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT5G57625.1	protein_coding	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein		CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT5G57887.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G58005.1	protein_coding	Cytochrome c oxidase, subunit Vib family protein		Cytochrome c oxidase, subunit Vib family protein;(source:Araport11)
AT5G59616.1	protein_coding	Interleukin-1 receptor-associated kinase 4 protein		Interleukin-1 receptor-associated kinase 4 protein;(source:Araport11)
AT5G59613.1	protein_coding			ATP synthase;(source:Araport11)
AT5G55507.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G13655.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1);(source:TAIR10)
AT5G52065.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40680.1);(source:TAIR10)
AT5G46875.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT1G17390.1);(source:TAIR10)
AT5G22800.1	protein_coding	Alanyl-tRNA synthetase, class IIc	A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	Alanyl-tRNA synthetase, class IIc;(source:Araport11)
AT5G57685.1	protein_coding	glutamine dumper 3	Encodes a member of the GDU (glutamine dumper) family proteins involved in amino acid export: At4g31730 (GDU1), At4g25760 (GDU2), At5g57685 (GDU3), At2g24762 (GDU4), At5g24920 (GDU5), At3g30725 (GDU6) and At5g38770 (GDU7).	glutamine dumper 3;(source:Araport11)
AT5G57735.1	other_rna	tasiR-ARF; other RNA	One of 3 loci encoding tasiR-ARF. A small interfering RNA that regulates the accumulation of ARF2,3 and 4.	other_RNA;(source:Araport11)
AT5G43935.1	protein_coding	flavonol synthase 6		flavonol synthase 6;(source:Araport11)
AT5G18065.1	protein_coding			target of trans acting-siR480/255 protein;(source:Araport11)
AT5G54585.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G65207.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G65165.1	protein_coding	succinate dehydrogenase 2-3	One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion.  Transcripts appear during seed maturation, persist through desiccation, are abundant in dry seeds, and markedly decline during germination.	succinate dehydrogenase 2-3;(source:Araport11)
AT5G23575.1	protein_coding	Transmembrane CLPTM1 family protein		Transmembrane CLPTM1 family protein;(source:Araport11)
AT5G23535.1	protein_coding	KOW domain-containing protein		KOW domain-containing protein;(source:Araport11)
AT5G47225.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22440.1);(source:TAIR10)
AT5G22545.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G46915.1	protein_coding	transcriptional factor B3 family protein		transcriptional factor B3 family protein;(source:Araport11)
AT5G43755.1	protein_coding			non-LTR retrolelement reverse transcriptase-like protein;(source:Araport11)
AT5G41505.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1);(source:TAIR10)
AT5G56890.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G06805.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1);(source:TAIR10)
AT5G50115.1	protein_coding			molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT5G65687.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G65690.1	protein_coding	phosphoenolpyruvate carboxykinase 2	Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent). The mRNA is cell-to-cell mobile.	phosphoenolpyruvate carboxykinase 2;(source:Araport11)
AT5G65683.1	protein_coding	Zinc finger (C3HC4-type RING finger) family protein		Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT5G65676.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.5e-191 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT5G24314.1	protein_coding	plastid transcriptionally active7		plastid transcriptionally active7;(source:Araport11)
AT5G35525.1	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT5G35475.1	protein_coding	General transcription factor 2-related zinc finger protein		General transcription factor 2-related zinc finger protein;(source:Araport11)
AT5G06905.1	protein_coding	cytochrome P450, family 712, subfamily A, polypeptide 2	member of CYP712A	cytochrome P450, family 712, subfamily A, polypeptide 2;(source:Araport11)
AT5G49665.1	protein_coding	Zinc finger (C3HC4-type RING finger) family protein		Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT5G40595.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G59105.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G43175.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G43065.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.5e-20 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G43105.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.7e-39 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT5G40942.1	pseudogene		Annotated as pseudogene of ribonucleoside-diphosphate reductase small chain/ ribonucleotide reductase.Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of ribonucleotide reductase 2A;(source:Araport11)
AT5G04895.1	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT5G36905.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to reverse transcriptase-related [Arabidopsis thaliana] (TAIR:AT4G12275.1);(source:TAIR10)
AT5G36935.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.5e-51 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G38705.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.4e-305 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G54145.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G54062.1	protein_coding			egg cell-secreted-like protein;(source:Araport11)
AT5G54067.1	protein_coding			B3 domain protein;(source:Araport11)
AT5G37175.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT2G15750.1);(source:TAIR10)
AT5G37125.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.0e-35 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G37145.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.9e-29 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT5G35607.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.6e-07 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G35608.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 4.6e-38 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT5G35655.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42760.1);(source:TAIR10)
AT5G35606.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 9.5e-133 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT5G42785.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G42655.1	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT5G51795.1	protein_coding	DNA/RNA-binding protein Kin17, conserved region		DNA/RNA-binding protein Kin17, conserved region;(source:Araport11)
AT5G35794.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1);(source:TAIR10)
AT5G35805.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01700.1);(source:TAIR10)
AT5G35792.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29700.1);(source:TAIR10)
AT5G35796.1	pseudogene			pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT5G35798.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mariner-like transposase family, has a 1.9e-52 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max);(source:TAIR10)
AT5G35912.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 4.3e-120 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G35914.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Unknown protein, similar to En/Spm-like transposon protein;(source:TAIR10)
AT5G35791.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.8e-59 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G56747.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-45 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G57035.1	protein_coding	U-box domain-containing protein kinase family protein		U-box domain-containing protein kinase family protein;(source:Araport11)
AT5G57015.1	protein_coding	casein kinase I-like 12	Member of CKL gene family (member of CKL-B group).	casein kinase I-like 12;(source:Araport11)
AT5G40855.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G42635.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT5G53135.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.9e-199 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G44415.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1);(source:TAIR10)
AT5G44420.1	protein_coding	plant defensin 1.2	Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. CFA-Leu, CFA-Val, CFA-Met and CFA-Ala can induce the expression of PDF.	plant defensin 1.2;(source:Araport11)
AT5G50715.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.3e-40 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G50665.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G36015.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OSJNBa0026J14.30, blastp match of 57%25 identity and 3.0e-64 P-value to GP|20146463|dbj|BAB89243.1||AP004231 OSJNBa0026J14.30 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT5G35965.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.9e-244 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G36035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1);(source:TAIR10)
AT5G35995.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G35945.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT5G36005.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.3e-48 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT5G42445.1	pseudogene			pseudogene of R-protein L3 B;(source:Araport11)
AT5G42325.1	protein_coding	Transcription factor IIS protein		Transcription factor IIS protein;(source:Araport11)
AT5G56075.1	protein_coding	Domain of unknown function (DUF2431)		methyltransferase small domain protein, putative (DUF2431);(source:Araport11)
AT5G55135.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G46025.1	protein_coding	Ras-related small GTP-binding family protein		Ras-related small GTP-binding family protein;(source:Araport11)
AT5G56325.1	protein_coding	FBD-like domain family protein		FBD-like domain family protein;(source:Araport11)
AT5G56367.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-37 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G63595.1	protein_coding	flavonol synthase 4		flavonol synthase 4;(source:Araport11)
AT5G42965.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G42905.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G42957.1	protein_coding	Protein of unknown function (DUF784)		inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT5G38595.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G17277.1);(source:TAIR10)
AT5G38565.1	protein_coding	F-box/FBD-like domains containing protein		F-box/FBD-like domains containing protein;(source:Araport11)
AT5G13825.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G36125.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G44345.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G44316.1	protein_coding	Stabilizer of iron transporter SufD superfamily protein		Stabilizer of iron transporter SufD superfamily protein;(source:Araport11)
AT5G44313.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03950.1);(source:TAIR10)
AT5G67385.1	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G54745.1	protein_coding	Trypsin family protein		Trypsin family protein;(source:Araport11)
AT5G39205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43770.1);(source:TAIR10)
AT5G39185.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.8e-17 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT5G45595.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to reverse transcriptase-related [Arabidopsis thaliana] (TAIR:AT5G26642.1);(source:TAIR10)
AT5G45573.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G45576.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.0e-84 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G45605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.0e-230 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT5G35604.1	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT5G35603.1	protein_coding	Protein of unknown function (DUF3287)		hypothetical protein (DUF3287);(source:Araport11)
AT5G35601.1	pseudogene			pseudogene of aconitase 3;(source:Araport11)
AT5G35602.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.0e-171 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G66052.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G48375.1	protein_coding	thioglucoside glucosidase 3	Is a myrosinase pseudogene that codes for a truncated and frameshifted protein.  Although TGG3 apparently is a pseudogene, its mRNA is expressed specifically in stamen and petal according to RT-PCR analysis. Western analysis shows no band of the size expected for a TGG3 protein.	thioglucoside glucosidase 3;(source:Araport11)
AT5G49215.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G44925.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G35413.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.6e-41 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G35416.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-16 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G35425.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G53905.1	protein_coding			prolamin-like protein;(source:Araport11)
AT5G53895.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G48965.1	transposable_element_gene		Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1), AT2G30640 (MUG2), AT1G06740 (MUG3), AT5G16505 (MUG4), AT3G06940 (MUG5), AT5G48965 (MUG6), AT3G05850 (MUG7) and AT5G34853 (MUG8).	transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.7e-47 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G37875.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.0e-38 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G05965.1	protein_coding			cell wall RBR3-like protein;(source:Araport11)
AT5G45116.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.2e-227 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT5G45113.1	protein_coding	mitochondrial transcription termination factor-related / mTERF-related		mitochondrial transcription termination factor-related / mTERF-like protein;(source:Araport11)
AT5G45105.1	pseudogene	zinc transporter 8 precursor		zinc transporter 8 precursor;(source:Araport11)
AT5G45085.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-148 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT5G41765.1	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT5G24355.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G42565.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT5G48575.1	protein_coding	Protein of unknown function (DUF1216)		mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216);(source:Araport11)
AT5G44635.1	protein_coding	minichromosome maintenance (MCM2/3/5) family protein		minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT5G65925.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G24155.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT5G37665.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-44 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT5G28845.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.0e-184 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G28885.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G28892.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, blastp match of 40%25 identity and 7.3e-142 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT5G28923.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.2e-39 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G28826.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.9e-218 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT5G28926.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.3e-152 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT5G28897.1	pseudogene			pseudogene of tonoplast intrinsic protein 2;(source:Araport11)
AT5G35045.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.5e-66 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G35052.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.1e-94 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT5G35116.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.7e-85 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G35057.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.7e-292 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G35025.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT5G35035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24910.1);(source:TAIR10)
AT5G35113.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.8e-276 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G01185.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.4e-123 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT5G01225.1	protein_coding			josephin-like protein;(source:Araport11)
AT5G32112.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, replication protein A1 -related, similar to putative replication protein A1;(source:TAIR10)
AT5G32022.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.9e-06 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT5G31932.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.4e-11 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT5G32082.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.6e-05 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G31842.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT5G32162.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to P0474G09.36, similar to mutator-like transposase, putative;(source:TAIR10)
AT5G31662.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.6e-143 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT5G31905.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-09 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT5G31572.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein;(source:TAIR10)
AT5G30942.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.3e-162 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G31302.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT5G31212.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.1e-46 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT5G31752.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34590.1);(source:TAIR10)
AT5G32122.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1);(source:TAIR10)
AT5G31122.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Putative copia-type polyprotein, blastp match of 56%25 identity and 1.5e-39 P-value to GP|15209144|gb|AAK91877.1|AC091665_3|AC091665 Putative copia-type polyprotein {Oryza sativa};(source:TAIR10)
AT5G32042.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.9e-41 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G31032.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.4e-35 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT5G31923.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to Athila retroelement ORF2, putative;(source:TAIR10)
AT5G31884.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.8e-09 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G30852.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT5G32169.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32405.1);(source:TAIR10)
AT5G30762.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32136.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-29 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT5G30673.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.0e-275 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32103.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.3e-140 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT5G31845.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.1e-232 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32037.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, helicase -related, similar to putative helicase;(source:TAIR10)
AT5G31962.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.6e-12 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT5G32002.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.5e-200 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT5G52545.1	protein_coding			RNA-binding protein-like RNA recognition motif protein;(source:Araport11)
AT5G52600.1	protein_coding	myb domain protein 82	Encodes a nuclear-localized transcription activator that is a member of the R2R3 factor gene family. MYB82 and GL1 can form homodimers and heterodimers at R2R3-MYB domains.  At least one of the two introns in MYB82 is essential to the protein?s trichome developmental function.	myb domain protein 82;(source:Araport11)
AT5G24915.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.1e-38 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G20165.1	protein_coding			kish-A-like protein;(source:Araport11)
AT5G28698.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.1e-28 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G28675.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.9e-257 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G28622.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.1e-21 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G28646.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family	Encodes a novel protein. The wvd2 gain-of-function mutant has impaired cell expansion and root waving, and changed root skewing.	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT5G28635.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.1e-162 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G28643.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, temporary automated functional assignment;(source:TAIR10)
AT5G28624.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.1e-145 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G28627.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to oj991113_30.20, blastp match of 38%25 identity and 1.9e-08 P-value to GP|21741715|emb|CAD41338.1||AL662946 oj991113_30.20 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT5G28692.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.9e-66 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G28696.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.2e-184 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G29015.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.3e-121 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT5G29024.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.1e-05 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G29028.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.4e-48 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G29026.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.2e-83 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G29022.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.2e-160 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G28935.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.0e-48 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G32592.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.2e-127 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT5G32566.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.9e-32 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G32525.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.2e-51 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G32563.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 3.8e-149 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT5G32596.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.3e-13 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G32518.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.5e-246 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT5G32591.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, PF03078: ATHILA ORF-1 family;(source:TAIR10)
AT5G32514.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.6e-126 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT5G32598.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.4e-171 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G32594.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.3e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32593.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.7e-163 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT5G32516.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G17125.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.1e-182 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT5G28235.1	protein_coding	Ulp1 protease family protein		Ulp1 protease family protein;(source:Araport11)
AT5G28484.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06700.1);(source:TAIR10)
AT5G28495.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.8e-77 P-value blast match to gb|AAL06416.1|AF378057_1 reverse transcriptase (Sorghum bicolor) (Gypsy_Ty3-family);(source:TAIR10)
AT5G28482.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12120.1);(source:TAIR10)
AT5G28487.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.5e-79 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G28466.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.2e-14 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT5G36655.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.9e-132 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G29295.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.5e-29 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT5G29075.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.4e-317 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G29056.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 5.6e-136 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT5G29032.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.1e-191 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G29034.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G29037.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.2e-209 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G29465.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-296 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G29550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G29053.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.0e-179 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G29380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.2e-111 P-value blast match to F23C08 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT5G29046.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G29043.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-176 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G25265.1	protein_coding			Hyp O-arabinosyltransferase-like protein;(source:Araport11)
AT5G26742.1	protein_coding	DEAD box RNA helicase (RH3)		DEAD box RNA helicase (RH3);(source:Araport11)
AT5G26617.1	protein_coding			reverse transcriptase-like protein;(source:Araport11)
AT5G28405.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.9e-30 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT5G28415.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-302 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT5G28463.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G33392.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 3.1e-137 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT5G33315.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.7e-20 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT5G33391.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative transposon protein;(source:TAIR10)
AT5G33384.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, temporary automated functional assignment;(source:TAIR10)
AT5G33306.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.7e-209 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G33389.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to Athila retroelement ORF2, putative;(source:TAIR10)
AT5G33393.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G33303.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04135.1);(source:TAIR10)
AT5G33388.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-262 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G33387.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative transposon protein;(source:TAIR10)
AT5G33365.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);expressed protein, similar to reverse transcriptase, putative;(source:TAIR10)
AT5G33382.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.3e-126 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata);(source:TAIR10)
AT5G33381.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.1e-68 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT5G33383.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-152 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G33386.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein;(source:TAIR10)
AT5G33355.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G33385.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.6e-206 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G30870.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G31314.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative athila-like protein;(source:TAIR10)
AT5G29708.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G30721.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.9e-17 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G31087.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-153 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G30648.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.3e-39 P-value blast match to F23C08 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT5G31651.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.7e-100 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT5G31980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.3e-304 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G31092.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.1e-263 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G31758.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G30207.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.7e-111 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G30269.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.3e-141 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT5G31536.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G29646.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.9e-233 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT5G32408.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to see GB:AF077408;(source:TAIR10)
AT5G32406.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.0e-37 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G32404.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to Athila retroelement ORF2, putative;(source:TAIR10)
AT5G32402.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-297 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32423.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF1 protein -related, temporary automated functional assignment;(source:TAIR10)
AT5G32426.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.6e-227 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32433.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.6e-155 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G32436.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.5e-34 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii);(source:TAIR10)
AT5G25757.1	protein_coding	RNA polymerase I-associated factor PAF67		RNA polymerase I-associated factor PAF67;(source:Araport11)
AT5G33422.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 3.5e-121 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT5G33442.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G33398.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.5e-17 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G33431.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, temporary automated functional assignment;(source:TAIR10)
AT5G33415.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, blastp match of 40%25 identity and 1.9e-148 P-value to GP|14140286|gb|AAK54292.1|AC034258_10|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT5G33434.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.2e-76 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G33410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14455.1);(source:TAIR10)
AT5G33406.1	protein_coding	hAT dimerisation domain-containing protein / transposase-related		hAT dimerization domain-containing protein / transposase-like protein;(source:Araport11)
AT5G33438.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.4e-29 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G33428.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-295 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT5G33427.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative transposon protein;(source:TAIR10)
AT5G33402.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G33420.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G33395.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 7.1e-27 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G33424.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-135 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G31778.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.5e-07 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G31496.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.1e-10 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G31919.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0.00019 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G31807.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-05 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G31412.1	protein_coding	hAT transposon superfamily protein		hAT transposon superfamily protein;(source:Araport11)
AT5G32060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.2e-201 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G31511.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.8e-70 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT5G31355.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.8e-153 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G31637.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.4e-14 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G32654.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.8e-78 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32626.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.5e-45 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32628.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to mutator-like transposase, putative;(source:TAIR10)
AT5G32621.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1);(source:TAIR10)
AT5G32624.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative Athila retroelement ORF2;(source:TAIR10)
AT5G32622.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.0e-135 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32616.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.5e-18 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G32605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06140.1);(source:TAIR10)
AT5G32613.1	protein_coding	Zinc knuckle (CCHC-type) family protein		Zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT5G32678.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32702.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-150 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT5G27947.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-188 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT5G27965.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.9e-182 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G28056.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT5G28053.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.3e-34 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G27925.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.0e-249 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G27606.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G27603.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G27885.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.4e-260 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G27895.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.2e-102 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT5G27905.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.6e-35 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G32312.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G31787.1);(source:TAIR10)
AT5G35917.1	protein_coding	cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene	a pseudogene with cytochrome P450 domain	cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene;(source:Araport11)
AT5G35935.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.0e-232 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G03435.1	protein_coding	Ca2+dependent plant phosphoribosyltransferase family protein		Ca2+dependent plant phosphoribosyltransferase family protein;(source:Araport11)
AT5G34838.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1);(source:TAIR10)
AT5G34849.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.5e-166 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G34837.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Hypothetical protein, similar to myb family protein;(source:TAIR10)
AT5G34846.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-44 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34848.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT5G34833.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.7e-165 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G34847.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34836.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.6e-287 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34835.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G34845.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative transposon protein;(source:TAIR10)
AT5G34834.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.8e-76 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34844.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-166 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34839.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.4e-09 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34843.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to see GB:AF077408;(source:TAIR10)
AT5G34832.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT5G34825.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.7e-76 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G34842.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-209 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34831.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT5G34841.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0.00011 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G18335.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G09146.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.7e-196 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G09143.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G09205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.6e-146 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT4G03835.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.1e-78 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G03816.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.6e-22 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT4G03813.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.1e-16 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G03826.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-123 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G03823.1	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT4G01925.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G01995.1	protein_coding			beta-carotene isomerase D27;(source:Araport11)
AT4G01935.1	protein_coding			insulin-induced protein;(source:Araport11)
AT4G07755.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-131 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT4G21366.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G21363.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.4e-18 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G03565.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT4G03745.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 9.4e-105 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G09965.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G19305.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1);(source:TAIR10)
AT4G40042.1	protein_coding	Microsomal signal peptidase 12 kDa subunit (SPC12)		Microsomal signal peptidase 12 kDa subunit (SPC12);(source:Araport11)
AT4G39952.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G39795.1	protein_coding	Protein of unknown function (DUF581)		hypothetical protein (DUF581);(source:Araport11)
AT4G03775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 9.9e-25 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT4G12275.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1);(source:TAIR10)
AT4G04745.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G04885.1	protein_coding	PCF11P-similar protein 4	Encodes PCFS4 (Pcf11p-similar protein 4), a homolog of yeast polyadenylation factor Protein 1 of Cleavage Factor (Pcf11p).  Regulates FCA (AT4G16280) mRNA polyadenylation.  Promotes flowering time.	PCF11P-similar protein 4;(source:Araport11)
AT4G08895.1	protein_coding	inorganic phosphate transporter family protein		inorganic phosphate transporter family protein;(source:Araport11)
AT4G08874.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G08873.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-21 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08872.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.0e-16 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G08871.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.2e-15 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT4G08876.1	protein_coding	pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related		pyrophosphate-fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-like protein;(source:Araport11)
AT4G08878.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT4G08655.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G30480.1);(source:TAIR10)
AT4G08596.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, FAR1 -related protein, temporary automated functional assignment;(source:TAIR10)
AT4G08593.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G08695.1	pseudogene			pseudogene of ribosomal protein L2;(source:Araport11)
AT4G07563.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.0e-144 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07528.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.6e-141 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G07519.1	transposable_element_gene	transposable element gene	similarity to PttA-like transposon protein	transposable_element_gene;(source:Araport11);pseudogene, expressed protein, similar to putative PttA-like transposon protein;(source:TAIR10)
AT4G07524.1	protein_coding	Ras-related small GTP-binding family protein		Ras-related small GTP-binding family protein;(source:Araport11)
AT4G07522.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.0e-76 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G07517.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 4.4e-138 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT4G07518.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.9e-32 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G07507.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, replication protein A1 -related, similar to putative replication protein A1;(source:TAIR10)
AT4G07496.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G07504.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.0e-29 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07526.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G07492.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.1e-179 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07523.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27180.1);(source:TAIR10)
AT4G07525.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.7e-09 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G07521.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1);(source:TAIR10)
AT4G07516.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-08 P-value blast match to GB:AAC34906 reverse transcriptase (LINE-element) (Forficula auricularia);(source:TAIR10)
AT4G07502.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-43 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07498.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-42 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07475.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to En/Spm-like transposon protein;(source:TAIR10)
AT4G07495.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.8e-23 P-value blast match to Q9ZQK4 /162-295 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G07494.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);transposon protein -related, temporary automated functional assignment;(source:TAIR10)
AT4G07485.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G11135.1);(source:TAIR10)
AT4G07493.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12345.1);(source:TAIR10)
AT4G07566.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-72 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07491.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.2e-215 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G04985.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G05073.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.1e-300 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G05076.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT4G08860.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT2G27870.1);(source:TAIR10)
AT4G08765.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.2e-158 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata);(source:TAIR10)
AT4G25433.1	protein_coding	peptidoglycan-binding LysM domain-containing protein		peptidoglycan-binding LysM domain-containing protein;(source:Araport11)
AT4G09255.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.9e-147 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT4G27595.1	protein_coding	Plant protein of unknown function (DUF827)	Encodes a microtubule-associated protein.	WEB family protein (DUF827);(source:Araport11)
AT4G37685.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G37705.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.5e-203 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT4G08405.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.7e-11 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster);(source:TAIR10)
AT4G08375.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.4e-244 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT4G08333.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.9e-53 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G08336.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42810.1);(source:TAIR10)
AT4G08395.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G04245.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0.00030 P-value blast match to GB:CAA30503 pol polypeptide (Ty1_Copia-element) (Drosophila melanogaster);(source:TAIR10)
AT4G04165.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G04276.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.2e-34 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G04273.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G36756.1);(source:TAIR10)
AT4G04426.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.7e-149 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G04545.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G09170.1);(source:TAIR10)
AT4G04525.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42810.1);(source:TAIR10)
AT4G04423.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G09625.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 9.1e-76 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G09595.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.6e-299 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G03975.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36060.1);(source:TAIR10)
AT4G03965.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G03916.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31980.1);(source:TAIR10)
AT4G03913.1	pseudogene			pseudogene of Ulp1 protease family protein;(source:Araport11)
AT4G04155.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28130.1);(source:TAIR10)
AT4G04145.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.8e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT4G04105.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-179 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G07931.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.2e-105 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G07942.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to Athila retroelement ORF2, putative;(source:TAIR10)
AT4G07941.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-311 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07915.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.0e-15 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT4G07939.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT4G07938.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.9e-176 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07896.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT4G07893.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT4G07936.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G07937.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-243 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07874.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 5.3e-100 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G07935.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.4e-86 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G07862.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.9e-51 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT4G07932.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G07934.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-44 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07856.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.7e-218 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G07933.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.8e-47 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G07868.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G24275.1	protein_coding		Identified as a screen for stress-responsive genes.	hypothetical protein;(source:Araport11)
AT4G24265.1	protein_coding			homeobox protein;(source:Araport11)
AT4G12423.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.8e-26 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT4G12426.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-10 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster);(source:TAIR10)
AT4G05589.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.7e-295 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G05587.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative Athila retroelement ORF2;(source:TAIR10)
AT4G05581.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G03970.1);(source:TAIR10)
AT4G05586.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.3e-222 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G05553.1	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT4G05523.1	protein_coding			nucleoporin GLE1-like protein;(source:Araport11)
AT4G05585.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.1e-315 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G05584.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.8e-50 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G05582.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.2e-76 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT4G05505.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.2e-35 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G05495.1	pseudogene			pseudogene of temperature sensing protein-like protein;(source:Araport11)
AT4G05556.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-223 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G05526.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OSJNBb0043H09.1, similar to En/Spm-like transposon protein, putative;(source:TAIR10)
AT4G05588.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT4G05591.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to Athila retroelement ORF2, putative;(source:TAIR10)
AT4G39745.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G35987.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G36080.1	protein_coding	phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases	Component of the SPT module of the SAGA complex.	phosphotransferases/inositol or phosphatidylinositol kinase;(source:Araport11)
AT4G04695.1	protein_coding	calcium-dependent protein kinase 31	member of Calcium Dependent Protein Kinase. Involved in response to salicylic acid.	calcium-dependent protein kinase 31;(source:Araport11)
AT4G04635.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43722.1);(source:TAIR10)
AT4G04692.1	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT4G04404.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT4G04402.1	protein_coding	two-component phosphorelay mediator, putative		two-component phosphorelay mediator;(source:Araport11)
AT4G04407.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Ta11 non-LTR retroelement protein -related, temporary automated functional assignment;(source:TAIR10)
AT4G04398.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45370.1);(source:TAIR10)
AT4G04394.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09400.1);(source:TAIR10)
AT4G04396.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43920.1);(source:TAIR10)
AT4G04392.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.7e-51 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G04316.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 9.6e-40 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G04313.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.8e-52 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT4G00905.1	protein_coding	NC domain-containing protein-related		NC domain-containing protein-like protein;(source:Araport11)
AT4G08072.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-36 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08056.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30843.1);(source:TAIR10)
AT4G08071.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT4G08078.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.6e-276 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08076.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.7e-64 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08074.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.3e-20 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G08053.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 3.4e-89 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT4G09455.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-236 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT4G09425.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.0e-309 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G08455.1	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT4G01595.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G01735.1	protein_coding			polyhomeotic-like protein;(source:Araport11)
AT4G02482.1	protein_coding	chloroplast outer envelope GTP-binding protein, putative		translocase of chloroplast-like protein;(source:Araport11)
AT4G02465.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G28005.1	protein_coding			NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit;(source:Araport11)
AT4G08111.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28120.1);(source:TAIR10)
AT4G08095.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.5e-92 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT4G08098.1	pseudogene		pseudogene of hypothetical protein	pseudogene of hypothetical protein;(source:Araport11)
AT4G08103.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.7e-35 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08097.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G08096.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.3e-60 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT4G08112.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.3e-176 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08092.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.3e-143 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT4G08091.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.4e-31 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G08108.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G08102.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.9e-23 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi);(source:TAIR10)
AT4G08106.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-28 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08109.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.6e-161 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08101.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-31 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08107.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.4e-71 P-value blast match to T13P21 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT4G08105.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.5e-121 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G08099.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.1e-34 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G08104.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-45 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08093.1	pseudogene			pseudogene of dihydroorotate dehydrogenase;(source:Araport11)
AT4G08094.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.5e-198 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT4G35165.1	protein_coding	Protein of unknown function (DUF1278)		egg cell-secreted-like protein (DUF1278);(source:Araport11)
AT4G10695.1	protein_coding	CDC68-related		CDC68-like protein;(source:Araport11)
AT4G08262.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.5e-30 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G08275.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.3e-99 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08267.1	protein_coding	hAT transposon superfamily protein		hAT transposon superfamily protein;(source:Araport11)
AT4G02715.1	protein_coding			flocculation FLO11-like protein;(source:Araport11)
AT4G08264.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative transposable element, similar to transposase, putative;(source:TAIR10)
AT4G25515.1	protein_coding	SEUSS-like 3		SEUSS-like 3;(source:Araport11)
AT4G15236.1	protein_coding	ABC-2 and Plant PDR ABC-type transporter family protein		ABC-2 and Plant PDR ABC-type transporter family protein;(source:Araport11)
AT4G15233.1	protein_coding	ABC-2 and Plant PDR ABC-type transporter family protein		ABC-2 and Plant PDR ABC-type transporter family protein;(source:Araport11)
AT4G15215.1	protein_coding	pleiotropic drug resistance 13		pleiotropic drug resistance 13;(source:Araport11)
AT4G16215.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G15885.1	protein_coding	kinesin motor protein-related		kinesin motor protein-like protein;(source:Araport11)
AT4G15715.1	protein_coding	Proteinase inhibitor I25, cystatin, conserved region		Proteinase inhibitor I25, cystatin, conserved region;(source:Araport11)
AT4G15563.1	protein_coding			F-box-like protein;(source:Araport11)
AT4G15053.1	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT4G15056.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G15417.1	protein_coding	RNAse II-like 1		RNAse II-like 1;(source:Araport11)
AT4G14805.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G14225.1	protein_coding	A20/AN1-like zinc finger family protein		A20/AN1-like zinc finger family protein;(source:Araport11)
AT4G14165.1	protein_coding	F-box family protein-related		F-box family protein-like protein;(source:Araport11)
AT4G13965.1	protein_coding	Protein with RNI-like/FBD-like domains		F-box/FBD/LRR protein;(source:Araport11)
AT4G15765.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT4G15755.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT4G17820.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.7e-11 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT4G17587.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 5.8e-32 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G16765.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G16835.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G16295.1	protein_coding	S-protein homologue 1	self-incompatibility (S) protein homolog, expressed at very low levels in floral buds	S-protein homologue 1;(source:Araport11)
AT4G16195.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT4G16095.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G16144.1	protein_coding	associated molecule with the SH3 domain of STAM 3	Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro.  Required for intracellular trafficking and vacuole biogenesis.	associated molecule with the SH3 domain of STAM 3;(source:Araport11)
AT4G16141.1	protein_coding	GATA type zinc finger transcription factor family protein		GATA type zinc finger transcription factor family protein;(source:Araport11)
AT4G15396.1	protein_coding	cytochrome P450, family 702, subfamily A, polypeptide 6		cytochrome P450, family 702, subfamily A, polypeptide 6;(source:Araport11)
AT4G15075.1	protein_coding	FBD-like domain family protein		FBD-like domain family protein;(source:Araport11)
AT4G14743.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT4G14746.1	protein_coding			neurogenic locus notch-like protein;(source:Araport11)
AT4G14145.1	protein_coding			cytochrome C oxidase assembly protein;(source:Araport11)
AT4G16045.1	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT4G15393.1	protein_coding	cytochrome P450, family 702, subfamily A, polypeptide 5	a member of the cytochrome P450 gene family. molecular function unknown.	cytochrome P450, family 702, subfamily A, polypeptide 5;(source:Araport11)
AT4G08114.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.6e-193 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G08138.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.7e-299 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G08134.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.6e-103 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT4G08132.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.6e-206 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08145.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein, contains Pfam domain, PF04827: Protein of unknown function (DUF635);(source:TAIR10)
AT4G08136.1	pseudogene			pseudogene of purple acid phosphatase 10;(source:Araport11)
AT4G08131.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.3e-05 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G08115.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.2e-05 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G08113.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30810.1);(source:TAIR10)
AT4G03415.1	protein_coding	Protein phosphatase 2C family protein	Encodes a myristoylated 2C-type protein phosphatase that interacts with AGB1 and is localized to the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT4G11385.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G11375.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.3e-183 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT4G32375.1	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G22545.1	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT4G21215.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G00695.1	protein_coding			Spc97/Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT4G00525.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G00165.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G24805.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G24975.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT4G05592.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.7e-43 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT4G05594.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.4e-08 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT4G05613.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-266 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G05597.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein;(source:TAIR10)
AT4G05595.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.6e-125 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT4G05593.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.9e-10 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi);(source:TAIR10)
AT4G07803.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, helicase -related, similar to putative helicase;(source:TAIR10)
AT4G07843.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.4e-108 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G07806.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.0e-124 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT4G07846.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0.00049 P-value blast match to GB:AAA98435 POL3 gene product (gypsy_Ty3-element) (Saccharomyces cerevisiae);(source:TAIR10)
AT4G03175.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G03165.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G03115.1	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G03305.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40110.1);(source:TAIR10)
AT4G03292.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT4G35785.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G01265.1	pseudogene	raffinose synthase family protein / seed imbibition protein-related	Pseudogene of AT4G01265; raffinose synthase family protein	pseudogene of seed imbibition 1;(source:Araport11)
AT4G01245.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G31615.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT4G18372.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT4G07458.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF1 protein -related, temporary automated functional assignment;(source:TAIR10)
AT4G07452.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G24930.1);(source:TAIR10)
AT4G07435.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to cytochrome P-450 aromatase-related [Arabidopsis thaliana] (TAIR:AT5G35270.1);(source:TAIR10)
AT4G07355.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF1 protein -related, temporary automated functional assignment;(source:TAIR10)
AT4G07456.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07338.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, helicase -related, similar to putative helicase;(source:TAIR10)
AT4G07454.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.2e-139 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G29905.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G10865.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT4G19645.1	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT4G08995.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase., similar to putative reverse transcriptase;(source:TAIR10)
AT4G35295.1	protein_coding	homoserine kinase, putative / HSK, putative		homoserine kinase, putative / HSK;(source:Araport11)
AT4G35335.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT4G06474.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);retroelement pol polyprotein;(source:TAIR10)
AT4G05634.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.9e-123 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT4G05632.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G05633.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);contains InterPro domain Arabidopsis retrotransposon ORF-1 protein;(source:TAIR10)
AT4G05631.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G05616.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04155.1);(source:TAIR10)
AT4G06196.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.4e-76 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G05918.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.7e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G05638.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-249 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G05636.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32161.1);(source:TAIR10)
AT4G20715.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1);(source:TAIR10)
AT4G20725.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G28485.1	protein_coding	DUF679 domain membrane protein 7	The structure of this gene is mis-annotated in TAIR10. Please refer to PMID:20712629 and the Comment field on the TAIR locus page for revised annotation.	transmembrane protein, putative (DUF679 domain membrane protein 7);(source:Araport11)
AT4G07965.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G07944.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32394.1);(source:TAIR10)
AT4G08038.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to reverse transcriptase, putative;(source:TAIR10)
AT4G07943.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05290.1);(source:TAIR10)
AT4G08034.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative non-LTR retroelement reverse transcriptase, similar to reverse transcriptase, putative;(source:TAIR10)
AT4G08025.1	protein_coding	Protein of unknown function (DUF784)		ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT4G08036.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.1e-08 P-value blast match to GB:AAC34906 reverse transcriptase (LINE-element) (Forficula auricularia);(source:TAIR10)
AT4G08016.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.1e-36 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G08032.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative transposable element, similar to transposase, putative;(source:TAIR10)
AT4G07945.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase, similar to reverse transcriptase, putative;(source:TAIR10)
AT4G08013.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40125.1);(source:TAIR10)
AT4G20095.1	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT4G21445.1	protein_coding		CRR9 gene encodes a novel stromal protein without any known functional domains or motifs. It is highly conserved in cyanobacteria and land plants but not in green algae.	receptor-interacting protein;(source:Araport11)
AT4G21585.1	protein_coding	endonuclease 4	Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.	endonuclease 4;(source:Araport11)
AT4G13885.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT4G33355.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G33495.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein	A member of the RPD gene family - there are13 annotated genes and one EST encoding RPD1-like proteins in Arabidopsis. Shows no homology to any protein of known function. Abundant expression found in the shoot apex and the root. rpd1 mutant is a temperature-sensitive mutant isolated on the basis of the impairment in adventitious roots formation in hypocotyl region. Also, disruption of the RPD1 gene by a T-DNA insertion caused embryogenesis arrest at the globular to transition stages. This phenotype is consistent with the hypothesized function of RPD1 in the maintenance of active cell proliferation.	Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT4G21705.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G09775.1	protein_coding			non-LTR retroelement reverse transcriptase;(source:Araport11)
AT4G09875.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT4G09745.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT4G00752.1	protein_coding	UBX domain-containing protein		UBX domain-containing protein;(source:Araport11)
AT4G07334.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.4e-97 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT4G07332.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT4G07331.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.1e-23 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G07327.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.1e-57 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07324.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 2.0e-145 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT4G07315.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.8e-190 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G07031.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to cytochrome P-450 aromatase-related [Arabidopsis thaliana] (TAIR:AT2G05870.1);(source:TAIR10)
AT4G06752.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.8e-276 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G07336.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.8e-10 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G19003.1	protein_coding	E2F/DP family winged-helix DNA-binding domain		E2F/DP family winged-helix DNA-binding domain-containing protein;(source:Araport11)
AT4G19006.1	protein_coding	Proteasome component (PCI) domain protein		Proteasome component (PCI) domain protein;(source:Araport11)
AT4G01535.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G01525.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family	transposable_element_gene;(source:Araport11)
AT4G32175.1	protein_coding	PNAS-3 related		PNAS-3-like protein;(source:Araport11)
AT4G32295.1	protein_coding			histone acetyltransferase;(source:Araport11)
AT4G34412.1	protein_coding			EKC/KEOPS complex subunit tprkb-like protein;(source:Araport11)
AT4G07662.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, helicase -related, similar to putative helicase;(source:TAIR10)
AT4G07725.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.8e-193 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G07733.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.5e-37 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07703.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.1e-98 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT4G07664.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.6e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07706.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 4.2e-16 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT4G07696.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, includes At2g06610, At5g28266, At3g42620, At4g07696, At2g06690, At2g16160, At2g05480, At2g12140, At1g45080, At2g16330;(source:TAIR10)
AT4G07668.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.5e-141 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G07736.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.6e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07693.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.1e-44 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G07685.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G07675.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G07666.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G05133.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G05145.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1);(source:TAIR10)
AT4G05095.1	protein_coding			non-LTR retrolelement reverse transcriptase;(source:Araport11)
AT4G36925.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G63530.1	protein_coding	RING/U-box superfamily protein	Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size.  Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.	RING/U-box superfamily protein;(source:Araport11)
AT3G48675.1	protein_coding	Protein of unknown function (DUF1278)		egg cell-secreted-like protein (DUF1278);(source:Araport11)
AT3G32330.1	protein_coding	DNA repair protein-related		DNA repair protein-like protein;(source:Araport11)
AT3G57586.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.8e-42 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G36659.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G10845.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G32904.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT3G32903.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G41750.1);(source:TAIR10)
AT3G32902.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07710.1);(source:TAIR10)
AT3G32896.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43157.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein;(source:TAIR10)
AT3G43156.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-260 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G43152.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-274 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G43154.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G43153.1	protein_coding	cAMP-dependent protein kinase inhibitor-related		cAMP-dependent protein kinase inhibitor-like protein;(source:Araport11)
AT3G43144.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.9e-97 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT3G43146.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.9e-55 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G43151.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.6e-74 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT3G43148.1	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT3G43158.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative transposon protein;(source:TAIR10)
AT3G45755.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G09510.1);(source:TAIR10)
AT3G43433.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);putative Ta11-related non-LTR retroelement protein, temporary automated functional assignment;(source:TAIR10)
AT3G43436.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.4e-14 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT3G43355.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, temporary automated functional assignment;(source:TAIR10)
AT3G43315.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.0e-37 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G33494.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G33293.1	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT3G33393.1	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT3G33572.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1);(source:TAIR10)
AT3G33448.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT3G33230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14340.1);(source:TAIR10)
AT3G01185.1	protein_coding	Protein of unknown function (DUF784)		prolamin-like protein (DUF784);(source:Araport11)
AT3G01085.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G53305.1	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 32	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 32;(source:Araport11)
AT3G53235.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G44796.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.2e-307 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G44793.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-48 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G44755.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G44805.1	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT3G44716.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G44713.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G42471.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT3G42535.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.7e-10 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G42438.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.5e-79 P-value blast match to Q9S9W4 /247-408 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G42436.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT3G42445.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF2 -related;(source:TAIR10)
AT3G42434.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.5e-111 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT3G42545.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.5e-26 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G42433.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0.00033 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT3G42432.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.4e-45 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42478.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.5e-62 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G42476.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.8e-19 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G42431.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-78 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42472.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.4e-39 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G42474.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.5e-38 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G49055.1	protein_coding			ATP-binding protein;(source:Araport11)
AT3G12545.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G48300.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 23	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 23;(source:Araport11)
AT3G48380.1	protein_coding	Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2		Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2;(source:Araport11)
AT3G48290.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 24	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 24;(source:Araport11)
AT3G48280.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 25	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 25;(source:Araport11)
AT3G48260.1	protein_coding	with no lysine (K) kinase 3	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.	with no lysine (K) kinase 3;(source:Araport11)
AT3G48270.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 26	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 26;(source:Araport11)
AT3G48310.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 22	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 22;(source:Araport11)
AT3G48340.1	protein_coding	Cysteine proteinases superfamily protein	KDEL-tailed cysteine endopeptidase. Mutants generated via RNAi show decreased lateral root growth.	Cysteine proteinases superfamily protein;(source:Araport11)
AT3G48320.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 21	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 21;(source:Araport11)
AT3G48470.1	protein_coding	embryo defective 2423		embryo defective 2423;(source:Araport11)
AT3G48430.1	protein_coding	relative of early flowering 6	Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins. The mRNA is cell-to-cell mobile.	relative of early flowering 6;(source:Araport11)
AT3G48330.1	protein_coding	protein-l-isoaspartate methyltransferase 1	Encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.	protein-l-isoaspartate methyltransferase 1;(source:Araport11)
AT3G48400.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G33076.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.2e-187 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G43726.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to P0703B11.15, blastp match of 44%25 identity and 1.3e-42 P-value to GP|18844826|dbj|BAB85296.1||AP003302 P0703B11.15 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G43835.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.4e-26 P-value blast match to GB:NP_038604 L1 repeat, Tf subfamily, member 26 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G43825.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.3e-106 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT3G43723.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.2e-252 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT3G61035.1	protein_coding	Cytochrome P450 superfamily protein		Cytochrome P450 superfamily protein;(source:Araport11)
AT3G60955.1	pseudogene		a cytochrome P450 pseudogene. overlaps with a real gene on the other strand.	pseudogene of Cytochrome P450 superfamily protein;(source:Araport11)
AT3G42203.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.5e-39 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G42155.1	protein_coding	glycosyl hydrolase family 9 protein		glycosyl hydrolase family 9 protein;(source:Araport11)
AT3G42182.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT3G42186.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-118 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT3G42178.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-197 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42174.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-277 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT3G33131.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32610.1);(source:TAIR10)
AT3G29786.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43320.1);(source:TAIR10)
AT3G29785.1	protein_coding			Pol-like polyprotein/retrotransposon;(source:Araport11)
AT3G33070.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.8e-191 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G33067.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF2 -related, temporary automated functional assignment;(source:TAIR10)
AT3G48195.1	protein_coding	Phox (PX) domain-containing protein	Encodes a member of the Arabidopsis sorting nexin family.	Phox (PX) domain-containing protein;(source:Araport11)
AT3G48235.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Hypothetical protein with similarity to putative Ac-like transposases, similar to Ac-like transposase;(source:TAIR10)
AT3G09925.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT3G10113.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G10116.1	protein_coding	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family		COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family;(source:Araport11)
AT3G03405.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G42806.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.2e-53 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G42803.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to P0707D10.17, similar to putative non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT3G42798.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OSJNBb0043H09.1, similar to En/Spm-like transposon protein;(source:TAIR10)
AT3G42796.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.5e-31 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G42792.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-related transposase, temporary automated functional assignment;(source:TAIR10)
AT3G42794.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.2e-05 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G42786.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G42791.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.7e-56 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT3G42783.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.1e-172 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G42837.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.7e-110 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT3G42835.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retroelement reverse transcriptase -related, temporary automated functional assignment;(source:TAIR10)
AT3G31909.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.0e-54 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G07195.1	protein_coding	RPM1-interacting protein 4 (RIN4) family protein		RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT3G43523.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 3.0e-50 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT3G43524.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative Ta11-like non-LTR retroelement protein;(source:TAIR10)
AT3G43522.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative Ta11-like non-LTR retroelement protein;(source:TAIR10)
AT3G43521.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT3G43563.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, temporary automated functional assignment;(source:TAIR10)
AT3G43546.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.5e-10 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G43485.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.6e-45 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT3G43447.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.7e-53 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G43444.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.9e-293 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G43528.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37120.1);(source:TAIR10)
AT3G43442.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.3e-33 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G43526.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.0e-29 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G44705.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.6e-46 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G44605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.1e-38 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G43867.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.2e-284 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G43862.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF2 -related, temporary automated functional assignment;(source:TAIR10)
AT3G43864.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G43955.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT3G44035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.8e-13 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G42316.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.9e-38 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT3G42313.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.2e-227 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G42305.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.1e-101 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT3G42386.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.5e-116 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT3G42383.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.1e-209 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G42356.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.0e-15 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42353.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to Mutator-like transposase;(source:TAIR10)
AT3G54460.1	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein		SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein;(source:Araport11)
AT3G54440.1	protein_coding	glycoside hydrolase family 2 protein		glycoside hydrolase family 2 protein;(source:Araport11)
AT3G54470.1	protein_coding	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis	uridine 5-monophosphate synthase / UMP synthase (PYRE-F) (UMPS);(source:Araport11)
AT3G45095.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.4e-140 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT3G29638.1	protein_coding	General transcription factor 2-related zinc finger protein		General transcription factor 2-related zinc finger protein;(source:Araport11)
AT3G29636.1	protein_coding	transferase-related		transferase-like protein;(source:Araport11)
AT3G42624.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);transposon protein -related, temporary automated functional assignment;(source:TAIR10)
AT3G42656.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OJ1029_F04.11, similar to Ac-like transposase;(source:TAIR10)
AT3G42645.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.4e-127 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G42653.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.1e-117 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT3G42626.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 6.8e-78 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G42628.1	protein_coding	phosphoenolpyruvate carboxylase-related / PEP carboxylase-related		phosphoenolpyruvate carboxylase-related / PEP carboxylase-like protein;(source:Araport11)
AT3G42622.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G42621.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.2e-90 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42711.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.7e-08 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G42556.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G51320.1);(source:TAIR10)
AT3G42553.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.6e-22 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G05155.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G62455.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.1e-232 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G44215.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.8e-150 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT3G44235.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G09035.1	protein_coding	Concanavalin A-like lectin family protein		Concanavalin A-like lectin family protein;(source:Araport11)
AT3G23685.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G18485.1	protein_coding	iaa-leucine resistant 2	Encodes a novel protein with no predicted membrane-spanning domains that is polymorphic among Arabidopsis accessions.  The protein may modulate a metal transporter. Mutants are resistant to IAA-Leu, IAA-Phe, and the divalent metals cobalt and manganese but remain sensitive to free IAA; they are defective in lateral root formation and primary root elongation.	iaa-leucine resistant 2;(source:Araport11)
AT3G29225.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.2e-15 P-value blast match to GB:CAA30503 pol polypeptide (Ty1_Copia-element) (Drosophila melanogaster);(source:TAIR10)
AT3G21215.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G29560.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G29385.1	protein_coding			dentin sialophosphoprotein-like protein;(source:Araport11)
AT3G24225.1	protein_coding	CLAVATA3/ESR-RELATED 19	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. Can partially replace CLV3 function in vivo. Regulates root meristem size in a SCR and SHR-independent pathway.	CLAVATA3/ESR-RELATED 19;(source:Araport11)
AT3G26235.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G30645.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G24930.1);(source:TAIR10)
AT3G20362.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G19895.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G25882.1	protein_coding	NIM1-interacting 2	encodes a kinase that physically interacts with NPR1/NIM1	NIM1-interacting 2;(source:Araport11)
AT3G29739.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 1.8e-33 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT3G24535.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G24517.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G13677.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G29305.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G30848.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31915.1);(source:TAIR10)
AT3G13224.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Belongs to a member of the RNA-binding glycine-rich (RBG) gene superfamily.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G13227.1	protein_coding	serine-rich protein-related		serine-rich protein-like protein;(source:Araport11)
AT3G30755.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G30480.1);(source:TAIR10)
AT3G30766.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, temporary automated functional assignment;(source:TAIR10)
AT3G30751.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT3G16565.1	protein_coding	alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding		threonyl and alanyl tRNA synthetase second additional domain-containing protein;(source:Araport11)
AT3G17225.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G28415.1	protein_coding	ABC transporter family protein		ABC transporter family protein;(source:Araport11)
AT3G28455.1	protein_coding	CLAVATA3/ESR-RELATED 25	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. Can not replace CLV3 function in vivo.CLE25 participates in long distance signaling in response to dehydration. It produces a graft transmissible signal from root to shoot that induces ABA synthesis and results in stomatal closure. The BAM1 and BAM3 receptor-kinases are  likely receptors for CLE25 as they are required for this signaling.	CLAVATA3/ESR-RELATED 25;(source:Araport11)
AT3G26616.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G26855.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT3G26775.1	pseudogene			pseudogene of Protein with RNI-like/FBD-like domains;(source:Araport11)
AT3G13229.1	protein_coding	Plant protein of unknown function (DUF868)		kinesin-like protein (DUF868);(source:Araport11)
AT3G13275.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G22421.1	protein_coding	F-box and associated interaction domains-containing protein		F-box/associated interaction domain protein;(source:Araport11)
AT3G12775.1	protein_coding	ubiquitin-conjugating enzyme family protein		ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT3G20155.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15356.1	protein_coding	Legume lectin family protein		Legume lectin family protein;(source:Araport11)
AT3G15354.1	protein_coding	SPA1-related 3	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain.  SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants.	SPA1-related 3;(source:Araport11)
AT3G28958.1	protein_coding	Cupredoxin superfamily protein		Cupredoxin superfamily protein;(source:Araport11)
AT3G28956.1	protein_coding	RNA polymerase II, Rpb4, core protein		RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT3G28925.1	protein_coding			structural maintenance of chromosomes protein;(source:Araport11)
AT3G29033.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT3G23245.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G23175.1	protein_coding	HR-like lesion-inducing protein-related		HR-like lesion-inducing protein-like protein;(source:Araport11)
AT3G25727.1	protein_coding			non-LTR retrolelement reverse transcriptase;(source:Araport11)
AT3G19055.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G30816.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28120.1);(source:TAIR10)
AT3G20555.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G45446.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.8e-37 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G45443.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G45525.1	protein_coding			RING/U-box protein with C6HC-type zinc finger protein;(source:Araport11)
AT3G45555.1	protein_coding	RING/U-box protein		RING/U-box protein;(source:Araport11)
AT3G42723.1	protein_coding	aminoacyl-tRNA ligases;ATP binding;nucleotide binding		ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein;(source:Araport11)
AT3G42717.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-229 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42716.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF2 -related, temporary automated functional assignment;(source:TAIR10)
AT3G42715.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.4e-209 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42714.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to unnamed protein product, similar to putative helicase;(source:TAIR10)
AT3G42763.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.5e-80 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G42713.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT3G42766.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.1e-274 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT3G42712.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.6e-81 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G42724.1	pseudogene			pseudogene of F-box/RNI-like superfamily protein;(source:Araport11)
AT3G42722.1	pseudogene		pseudogene of the F-box protein family	pseudogene of F-box/RNI-like superfamily protein;(source:Araport11)
AT3G42721.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.2e-145 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT3G42718.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein;(source:TAIR10)
AT3G42996.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.4e-235 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT3G42993.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.2e-156 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G43142.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.0e-273 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G43141.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.1e-194 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G43126.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 6.3e-145 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT3G43123.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT3G43095.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT3G43302.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.7e-143 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G43307.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.6e-72 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT3G43304.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.1e-231 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G43205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.5e-21 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT3G43175.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.4e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G06545.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G01516.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G01513.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G42054.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.4e-63 P-value blast match to gb|AAL06420.1|AF378078_1 reverse transcriptase (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT3G42052.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.0e-162 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G42083.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), contains Pfam profile PF03078: ATHILA ORF-1 family;(source:TAIR10)
AT3G42115.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-28 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G42086.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.5e-98 P-value blast match to GB:AAA66266 unknown protein ORF1 transposable element En-1 (CACTA-element) (Zea mays);(source:TAIR10)
AT3G42065.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.5e-45 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii);(source:TAIR10)
AT3G42057.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.6e-177 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G05975.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT3G06145.1	protein_coding			RING zinc finger protein;(source:Araport11)
AT3G62725.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-41 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G44115.1	protein_coding	Protein of unknown function (DUF784)		ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT3G44205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.5e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT3G44175.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase, similar to reverse transcriptase, putative;(source:TAIR10)
AT3G44096.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.8e-23 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT3G44093.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.4e-162 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT3G42258.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.2e-52 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42257.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.0e-204 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42256.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.8e-238 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42233.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.2e-82 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT3G42206.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to pol polyprotein, blastp match of 35%25 identity and 3.4e-12 P-value to GP|14586969|gb|AAK70407.1|AF369930_2|AF369930 pol polyprotein {Citrus x paradisi};(source:TAIR10)
AT3G42255.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Hypothetical protein with similarity to putative Ac-like transposases, similar to Ac-like transposase;(source:TAIR10)
AT3G42254.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05560.1);(source:TAIR10)
AT3G42252.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.5e-85 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42251.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT3G42253.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF2 -related, temporary automated functional assignment;(source:TAIR10)
AT3G42245.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-95 P-value blast match to GB:AAC64917 gag-pol polyprotein (Ty1_Copia-element) (Glycine max);(source:TAIR10)
AT3G42236.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.7e-198 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G11402.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G43688.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G43652.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 5.2e-105 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT3G43654.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.7e-150 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT3G43657.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.7e-16 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT3G43675.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.3e-132 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G43681.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.6e-219 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G43682.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43715.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT3G43635.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G43684.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);contains InterPro domain Retrotransposon gag protein;(source:TAIR10)
AT3G43686.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.0e-142 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G43625.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.3e-32 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G52525.1	protein_coding	ovate family protein 6		ovate family protein 6;(source:Araport11)
AT3G43575.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.0e-44 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G43566.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-210 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G03847.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G03776.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G03773.1	protein_coding	HSP20-like chaperones superfamily protein	Encodes one of two isoforms of a co-chaperone of HSP90 that is required for root growth, in particular in the maintenance of the root meristem.  It can be phosphorylated in vitro by human and maize CK2.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT3G26445.1	protein_coding	beta-1,4-N-acetylglucosaminyltransferase family protein		beta-1,4-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT3G32394.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42750.1);(source:TAIR10)
AT3G32410.1	protein_coding			actin-binding FH2 (formin-like) protein;(source:Araport11)
AT3G42875.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative transposase, similar to En/Spm-like transposon protein, putative;(source:TAIR10)
AT3G42935.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.9e-27 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G42945.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.1e-74 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G42927.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.2e-94 P-value blast match to F18P9 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT3G42924.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.2e-102 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT3G42922.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to Mutator-like transposase;(source:TAIR10)
AT3G42913.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.8e-227 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G42886.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.0e-89 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G42883.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.5e-10 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster);(source:TAIR10)
AT3G42916.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);transposon protein -related, temporary automated functional assignment;(source:TAIR10)
AT3G56275.1	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT3G45256.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT3G45253.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.0e-48 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT3G46484.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.9e-151 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT3G46482.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT3G46387.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.6e-41 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT3G46384.1	pseudogene			pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT3G46382.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to P0416D03.16, similar to non-LTR reverse transcriptase, putative;(source:TAIR10)
AT3G46375.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-32 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G46345.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to non-LTR reverse transcriptase, putative;(source:TAIR10)
AT3G46487.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-38 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G05685.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT3G05625.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G24065.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G44935.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G10405.1	protein_coding			vacuolar acid trehalase;(source:Araport11)
AT3G10585.1	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G10595.1	protein_coding	Duplicated homeodomain-like superfamily protein		Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT3G46183.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.7e-230 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT3G46186.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT3G50373.1	protein_coding			transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT3G50376.1	pseudogene		pseudogene of NLI interacting factor (NIF) family protein	pseudogene of Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G11325.1	protein_coding	Phospholipid/glycerol acyltransferase family protein		Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT2G26455.1	pseudogene			pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT2G29125.1	protein_coding	ROTUNDIFOLIA like 2		ROTUNDIFOLIA like 2;(source:Araport11)
AT2G06875.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.6e-46 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT2G06845.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT2G06908.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G06906.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G06904.1	protein_coding	nucleic acid binding;zinc ion binding		nucleic acid / zinc ion binding protein;(source:Araport11)
AT2G06902.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 4.2e-39 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT2G30395.1	protein_coding	ovate family protein 17	Member of the plant specific ovate protein family of unknown function.	ovate family protein 17;(source:Araport11)
AT2G37925.1	protein_coding	copper transporter 4	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	copper transporter 4;(source:Araport11)
AT2G38025.1	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT2G01755.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G40205.1	protein_coding	Ribosomal protein L41 family		Ribosomal protein L41 family;(source:Araport11)
AT2G38995.1	protein_coding	O-acyltransferase (WSD1-like) family protein		O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT2G40745.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05915.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05845.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.3e-45 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G42005.1	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT2G30615.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT2G30575.1	protein_coding	los glycosyltransferase 5	Encodes a protein with  putative galacturonosyltransferase activity.	los glycosyltransferase 5;(source:Araport11)
AT2G10602.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07768.1	protein_coding	Cytochrome C assembly protein		Cytochrome C assembly protein;(source:Araport11)
AT2G07772.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07767.1	transposable_element_gene	transposable element gene	similarity to putative non-LTR retroelement reverse transcriptase	transposable_element_gene;(source:Araport11);expressed protein, similar to putative non-LTR retroelement reverse transcriptase;(source:TAIR10)
AT2G07744.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, low similarity to SP|Q9UUA2 DNA repair and recombination protein pif1, mitochondrial precursor {Schizosaccharomyces pombe};(source:TAIR10)
AT2G07747.1	pseudogene			pseudogene of Intron maturase;(source:Araport11)
AT2G07751.1	protein_coding	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein		NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein;(source:Araport11)
AT2G07749.1	protein_coding	Mitovirus RNA-dependent RNA polymerase		Mitovirus RNA-dependent RNA polymerase;(source:Araport11)
AT2G07774.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07769.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.2e-18 P-value blast match to gb|AAO73523.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT2G39805.1	protein_coding	Integral membrane Yip1 family protein		Integral membrane Yip1 family protein;(source:Araport11)
AT2G39855.1	protein_coding			plant/protein;(source:Araport11)
AT2G07775.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G03505.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT2G06965.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, temporary automated functional assignment;(source:TAIR10)
AT2G10555.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G35260.1);(source:TAIR10)
AT2G05645.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G32295.1	protein_coding	EXS (ERD1/XPR1/SYG1) family protein		EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT2G32415.1	protein_coding	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain		Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein;(source:Araport11)
AT2G22795.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G18465.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G37195.1	protein_coding			acyl-CoA-binding domain protein;(source:Araport11)
AT2G23985.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G39975.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G24395.1	protein_coding	chaperone protein dnaJ-related		chaperone protein dnaJ-like protein;(source:Araport11)
AT2G24285.1	protein_coding			zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT2G30115.1	other_rna			other_RNA;(source:Araport11)
AT2G12505.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47230.1);(source:TAIR10)
AT2G07215.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05752.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G04235.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G32905.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein, putative (DUF313);(source:Araport11)
AT2G26975.1	protein_coding	Ctr copper transporter family		Ctr copper transporter family;(source:Araport11)
AT2G02795.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G02835.1	protein_coding			nucleic acid/zinc ion-binding protein;(source:Araport11)
AT2G35615.1	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT2G40925.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G04395.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G04495.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G04515.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G37025.1	protein_coding	TRF-like 8		TRF-like 8;(source:Araport11)
AT2G37035.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G33835.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein	Encodes a zinc finger domain  containing protein that is expressed in the shoot/root apex and vasculature, and acts with FRI to repress flowering.FES1 mutants in a Col(FRI+) background will flower early under inductive conditions.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT2G33855.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G33775.1	protein_coding	ralf-like 19	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 19;(source:Araport11)
AT2G28315.1	protein_coding	Nucleotide/sugar transporter family protein	UXT1 is a member of the NST-KT subfamily  of nucleotide/sugar transporters. It is localized to the golgi and ER. UXT1 functions as a UDP-Xyl transporter. The mRNA is cell-to-cell mobile.	Nucleotide/sugar transporter family protein;(source:Araport11)
AT2G12875.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G12935.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G12945.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G12905.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G38365.1	protein_coding			endonuclease/glycosyl hydrolase;(source:Araport11)
AT2G12835.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-41 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT2G02955.1	protein_coding	maternal effect embryo arrest 12		maternal effect embryo arrest 12;(source:Araport11)
AT2G17705.1	protein_coding			methionine-S-oxide reductase;(source:Araport11)
AT2G17785.1	protein_coding	zinc-binding protein-related		zinc-binding protein-like protein;(source:Araport11)
AT2G13115.1	pseudogene		pseudogene of bZIP family transcription factor	pseudogene of Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G13145.1	pseudogene			pseudogene of Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G13125.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G31081.1	protein_coding	CLAVATA3/ESR-RELATED 4	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 4;(source:Araport11)
AT2G31082.1	protein_coding	CLAVATA3/ESR-RELATED 7	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 7;(source:Araport11)
AT2G31083.1	protein_coding	CLAVATA3/ESR-RELATED 5	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 5;(source:Araport11)
AT2G10175.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30650.1);(source:TAIR10)
AT2G09865.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G38380.1);(source:TAIR10)
AT2G06775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06140.1);(source:TAIR10)
AT2G14415.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.7e-18 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G11135.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04273.1);(source:TAIR10)
AT2G11165.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G20495.1	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT2G06555.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G28725.1	protein_coding			forkhead box protein G1;(source:Araport11)
AT2G41835.1	protein_coding	zinc finger (C2H2 type, AN1-like) family protein		zinc finger (C2H2 type, AN1-like) family protein;(source:Araport11)
AT2G12305.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 3.7e-143 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT2G17525.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G14045.1	protein_coding			c-Myc-binding protein;(source:Araport11)
AT2G21237.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G21235.1	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G16015.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G11775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT2G42975.1	protein_coding			myosin-G heavy chain-like protein;(source:Araport11)
AT2G10105.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);contains domain ATHILA RETROELEMENT ORF1 PROTEIN (PTHR10178:SF9);(source:TAIR10)
AT2G44175.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G06165.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06025.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G06095.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G17305.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT2G20724.1	pseudogene		Annotated as pseudogene of unknown protein.Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167 .	pseudogene of expressed protein;(source:Araport11)
AT2G33655.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G33385.1	protein_coding	actin-related protein C2B		actin-related protein C2B;(source:Araport11)
AT2G33585.1	protein_coding			subtilisin-like protease;(source:Araport11)
AT2G45403.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G45406.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G25737.1	protein_coding	Sulfite exporter TauE/SafE family protein		Sulfite exporter TauE/SafE family protein;(source:Araport11)
AT2G25605.1	protein_coding			DNA-directed RNA polymerase subunit beta;(source:Araport11)
AT2G04037.1	protein_coding	Protein of unknown function (DUF784)		ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT2G04041.1	protein_coding	Protein of unknown function (DUF784)		ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT2G04135.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G33303.1);(source:TAIR10)
AT2G11345.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04130.1);(source:TAIR10)
AT2G11405.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G11462.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G37435.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT2G01505.1	protein_coding	CLAVATA3/ESR-RELATED 16	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 16;(source:Araport11)
AT2G36295.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G36305.1	protein_coding	farnesylated protein-converting enzyme 2	Encodes an endoprotease involved in the cleavage of prenylated CaaX-box proteins. In vitro, it can cleave a farnesylated tetrapeptide and it can promote membrane-localization of a farnesylated GFP:AtROP9 protein when both are expressed in yeast.	farnesylated protein-converting enzyme 2;(source:Araport11)
AT2G04842.1	protein_coding	threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative	Encodes a dual localized threonyl-tRNA synthetase found both in the mitochondrion and the chloroplast.  Plants mutated in this gene terminate as embryos in the globular stage.	threonyl-tRNA synthetase, putative / threonine-tRNA ligase;(source:Araport11)
AT2G04865.1	protein_coding	Aminotransferase-like, plant mobile domain family protein	Encodes a nuclear localized aminotransferase-like protein containing a plant mobile domain. The mRNA is cell-to-cell mobile.	Aminotransferase-like, plant mobile domain family protein;(source:Araport11)
AT2G15327.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G40113.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT2G23755.1	protein_coding			transmembrane family 220 helix protein;(source:Araport11)
AT2G40116.1	protein_coding	Phosphoinositide-specific phospholipase C family protein		Phosphoinositide-specific phospholipase C family protein;(source:Araport11)
AT2G40095.1	protein_coding	Alpha/beta hydrolase related protein		Alpha/beta hydrolase related protein;(source:Araport11)
AT2G07455.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF1 protein -related, temporary automated functional assignment;(source:TAIR10)
AT2G24915.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G30480.1);(source:TAIR10)
AT2G24945.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G15345.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT2G33205.1	protein_coding	Serinc-domain containing serine and sphingolipid biosynthesis protein		Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT2G28105.1	protein_coding			replication factor-A carboxy-terminal domain protein;(source:Araport11)
AT2G12405.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G01034.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G01037.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G01031.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1);(source:TAIR10)
AT2G01022.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.3e-208 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G01024.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.7e-175 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G01026.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G01028.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.0e-150 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT2G31985.1	protein_coding	Protein of unknown function (DUF1264)		lipoprotein (DUF1264);(source:Araport11)
AT2G32235.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G31865.1	protein_coding	poly(ADP-ribose) glycohydrolase 2		poly(ADP-ribose) glycohydrolase 2;(source:Araport11)
AT2G16575.1	protein_coding		ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	mucin;(source:Araport11)
AT2G05025.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G36402.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1);(source:TAIR10)
AT2G35035.1	protein_coding	urease accessory protein D	Encodes a urease accessory protein which is essential for the activation of plant urease.	urease accessory protein D;(source:Araport11)
AT2G15815.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26350.1);(source:TAIR10)
AT2G43745.1	protein_coding			jacalin lectin-like protein;(source:Araport11)
AT2G43795.1	protein_coding			corepressor;(source:Araport11)
AT2G13865.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52840.1);(source:TAIR10)
AT2G29525.1	protein_coding	Arabidopsis Inositol phosphorylceramide synthase 3	Inositol phosphorylceramide synthase	Inositol phosphorylceramide synthase 3;(source:Araport11)
AT2G38255.1	protein_coding	Protein of Unknown Function (DUF239)		hypothetical protein (DUF239);(source:Araport11)
AT2G16365.1	protein_coding	F-box family protein	PCH1 binds and stabilizes the active (Pfr) form of phytochrome B and is involved in the formation of photobodies in the nucleus. PCH1 is expressed in evenings and is associated to the evening complex through binding to phyB, and represses hypocotyl elongation and growth. Using mass spec, the existence of the At2g16365.2 isoform has been verified, however here is no evidence that any of the other three variants are present. Atg2G16365.2 will be assigned PCH1; exon 4 and 5 in the other variants are actually another gene of the F-box/DUF295 family with gene name FDA10.	F-box family protein;(source:Araport11)
AT2G16405.1	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G31215.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G44735.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G13175.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.5e-34 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G27535.1	protein_coding	ribosomal protein L10A family protein		ribosomal protein L10A family protein;(source:Araport11)
AT2G11015.1	protein_coding	Protein of unknown function (DUF3287)		hypothetical protein (DUF3287);(source:Araport11)
AT2G11005.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT2G10975.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G10965.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G15185.1	protein_coding	zinc knuckle (CCHC-type) protein-related		zinc knuckle (CCHC-type) protein-like protein;(source:Araport11)
AT2G11623.1	protein_coding	Plant protein 1589 of unknown function		Plant protein 1589 of unknown function;(source:Araport11)
AT2G11626.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G43255.1	protein_coding			O-acyltransferase WSD1-like protein;(source:Araport11)
AT2G38823.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G46495.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G46535.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G27385.1	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT2G16905.1	pseudogene			pseudogene of MATE efflux family protein;(source:Araport11)
AT2G16895.1	pseudogene			pseudogene of UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G46455.1	protein_coding	OxaA/YidC-like membrane insertion protein		OxaA/YidC-like membrane insertion protein;(source:Araport11)
AT2G12685.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30610.1);(source:TAIR10)
AT2G12695.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24915.1);(source:TAIR10)
AT2G01275.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G27505.1	protein_coding	FBD-like domain family protein		FBD-like domain family protein;(source:Araport11)
AT1G78955.1	protein_coding	camelliol C synthase 1	Encodes a cyclase that generates predominantly a monocyclic triterpene alcohol. The product is 97% camelliol, 2% achilleol A and 0.2% beta-amyrin. Achilleol is an isomer of camelliol C with a 4-methylenecyclohexanol ring system.	camelliol C synthase 1;(source:Araport11)
AT1G58520.1	protein_coding	lipases;hydrolases, acting on ester bonds		GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT1G72260.1	protein_coding	thionin 2.1	Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	thionin 2.1;(source:Araport11)
AT1G33135.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13320.1);(source:TAIR10)
AT1G35365.1	protein_coding	Protein of unknown function (DUF1184)		hypothetical protein (DUF1184);(source:Araport11)
AT1G35375.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G32585.1	protein_coding	VQ motif-containing protein-related		VQ motif-containing protein-like protein;(source:Araport11)
AT1G65342.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G42515.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G45570.1);(source:TAIR10)
AT1G61095.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G02065.1	protein_coding	squamosa promoter binding protein-like 8	Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation.	squamosa promoter binding protein-like 8;(source:Araport11)
AT1G05065.1	protein_coding	CLAVATA3/ESR-RELATED 20	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 20;(source:Araport11)
AT1G05055.1	protein_coding	general transcription factor II H2	Member of transcription factor TFIIH complex. Involved in transcription and DNA repair and interacts with AtXPD.	general transcription factor II H2;(source:Araport11)
AT1G68845.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G68945.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G68935.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G13245.1	protein_coding	ROTUNDIFOLIA like 17		ROTUNDIFOLIA like 17;(source:Araport11)
AT1G66245.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G66235.1	protein_coding			no-apical-meristem-associated carboxy-terminal domain protein;(source:Araport11)
AT1G56085.1	protein_coding	Cyclophilin		Cyclophilin;(source:Araport11)
AT1G08035.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G47915.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G02405.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT1G30757.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G55535.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G77765.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G37045.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42430.1);(source:TAIR10)
AT1G36960.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G37015.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06716.1);(source:TAIR10)
AT1G37037.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT1G59690.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G59675.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G59722.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G45230.1	protein_coding	Protein of unknown function (DUF3223)		DCL protein (DUF3223);(source:Araport11)
AT1G60075.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G11145.1	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT1G39515.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-36 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G09995.1	protein_coding	DNA repair DEAD helicase RAD3/XP-D subfamily protein		DNA repair DEAD helicase RAD3/XP-D subfamily protein;(source:Araport11)
AT1G16025.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G27695.1	protein_coding	glycine-rich protein	TGD5 encodes a small glycine rich protein that is localized to the chloroplast envelope and is a component of the ER to plastid lipid trafficking pathway. TGD5 interacts with other components of this pathway including TGD1, TGD2, TGD3, and TGD4.	glycine-rich protein;(source:Araport11)
AT1G05785.1	protein_coding	Got1/Sft2-like vescicle transport protein family		Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT1G20225.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT1G04635.1	protein_coding	ribonuclease P family protein / Rpp14 family protein		ribonuclease P family protein / Rpp14 family protein;(source:Araport11)
AT1G67455.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G73165.1	protein_coding	CLAVATA3/ESR-RELATED 1	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. Can replace CLV3 function in vivo.	CLAVATA3/ESR-RELATED 1;(source:Araport11)
AT1G55365.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G58235.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53935.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G30845.1	protein_coding			cell growth defect protein;(source:Araport11)
AT1G30835.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family The mRNA is cell-to-cell mobile.	transposable_element_gene;(source:Araport11)
AT1G36745.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G36675.1	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT1G77145.1	protein_coding	Protein of unknown function (DUF506) 		transmembrane protein, putative (DUF506);(source:Araport11)
AT1G51965.1	protein_coding	ABA Overly-Sensitive 5	Encodes ABA Overly-Sensitive5 (ABO5), a pentatricopeptide repeat protein required for cis-splicing of mitochondrial nad2 intron 3.  Involved in response to abscisic acid.	ABA Overly-Sensitive 5;(source:Araport11)
AT1G63855.1	protein_coding	Putative methyltransferase family protein		Putative methyltransferase family protein;(source:Araport11)
AT1G31990.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G12725.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28570.1);(source:TAIR10)
AT1G44875.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42520.1);(source:TAIR10)
AT1G43415.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G10455.1	protein_coding			B3 DNA-binding domain protein;(source:Araport11)
AT1G58766.1	protein_coding			B-block-binding subunit of TFIIIC protein;(source:Araport11)
AT1G58725.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G58684.1	protein_coding	Ribosomal protein S5 family protein		Ribosomal protein S5 family protein;(source:Araport11)
AT1G58848.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G58561.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.8e-219 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT1G58807.1	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G58643.1	protein_coding	Inositol-pentakisphosphate 2-kinase family protein		Inositol-pentakisphosphate 2-kinase family protein;(source:Araport11)
AT1G58602.1	protein_coding	LRR and NB-ARC domains-containing disease resistance protein		LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT1G48635.1	protein_coding	peroxin 3		peroxin 3;(source:Araport11)
AT1G63245.1	protein_coding	CLAVATA3/ESR-RELATED 14	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. Can not replace CLV3 function in vivo.	CLAVATA3/ESR-RELATED 14;(source:Araport11)
AT1G41680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G32975.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G15165.1	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G15125.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G78915.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G52155.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G20925.1	protein_coding	Auxin efflux carrier family protein	Member of family of proteins that are similar to PIN auxin transporter.	Auxin efflux carrier family protein;(source:Araport11)
AT1G43895.1	pseudogene			pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT1G38203.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.5e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38212.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to see GB:AF077408;(source:TAIR10)
AT1G38131.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G38194.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT1G38185.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-21 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38230.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.7e-60 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38260.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.5e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38176.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein;(source:TAIR10)
AT1G38167.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.5e-98 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT1G38250.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein;(source:TAIR10)
AT1G38240.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.1e-20 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT1G38158.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.3e-228 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38221.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.2e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38149.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-51 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G38140.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 9.2e-38 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G21695.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G42655.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Putative retroelement, blastp match of 45%25 identity and 3.2e-41 P-value to GP|21671994|gb|AAM74356.1|AC115686_23|AC115686 Putative retroelement {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT1G15825.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G36395.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT1G14205.1	protein_coding	Ribosomal L18p/L5e family protein		Ribosomal L18p/L5e family protein;(source:Araport11)
AT1G52565.1	protein_coding			cytochrome P450 family protein;(source:Araport11)
AT1G41855.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05640.1);(source:TAIR10)
AT1G06925.1	protein_coding			endonuclease/glycosyl hydrolase;(source:Araport11)
AT1G16445.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G16225.1	protein_coding	Target SNARE coiled-coil domain protein		Target SNARE coiled-coil domain protein;(source:Araport11)
AT1G24265.1	protein_coding	Protein of unknown function (DUF1664)		bZIP transcription factor, putative (DUF1664);(source:Araport11)
AT1G71235.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G78355.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G17277.1);(source:TAIR10)
AT1G05577.1	protein_coding	Domain of unknown function (DUF966)	SOK1  is a DUF966 domain containing protein. It is expressed during embryogenesis in the apical-lateral plasma membrane. SOK1 can form homodimers and it's polar localization of SOK1 depends on N terminal domains within the protein. Misexpression of SOK1 or delocalization alters cell division planes.	UPSTREAM OF FLC protein (DUF966);(source:Araport11)
AT1G05615.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein (DUF313);(source:Araport11)
AT1G13145.1	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT1G73885.1	protein_coding			AT-rich interactive domain protein;(source:Araport11)
AT1G74045.1	protein_coding	tetraspanin 17	Member of TETRASPANIN family	tetraspanin-17 protein;(source:Araport11)
AT1G73875.1	protein_coding	DNAse I-like superfamily protein	Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT1G73965.1	protein_coding	CLAVATA3/ESR-RELATED 13	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. Can partially replace CLV3 function in vivo.	CLAVATA3/ESR-RELATED 13;(source:Araport11)
AT1G43665.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G43722.1	protein_coding			nuclease;(source:Araport11)
AT1G38380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34855.1);(source:TAIR10)
AT1G76705.1	protein_coding	calmodulin binding		calmodulin binding protein;(source:Araport11)
AT1G31175.1	protein_coding			cytochrome C oxidase biogenesis Cmc1-like protein;(source:Araport11)
AT1G31163.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G31166.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.7e-38 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G77855.1	protein_coding			BPS1-like protein;(source:Araport11)
AT1G43777.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28250.1);(source:TAIR10)
AT1G31740.1	protein_coding	beta-galactosidase 15	Encodes a putative &beta;-galactosidase.	beta-galactosidase 15;(source:Araport11)
AT1G49005.1	protein_coding	CLAVATA3/ESR-RELATED 11	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. Can partially replace CLV3 function in vivo.	CLAVATA3/ESR-RELATED 11;(source:Araport11)
AT1G45015.1	protein_coding	MD-2-related lipid recognition domain-containing protein		MD-2-related lipid recognition domain-containing protein;(source:Araport11)
AT1G56555.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G40143.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.5e-179 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G40130.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G40106.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G40100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-77 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G40112.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.1e-158 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT1G40124.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 4.4e-26 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT1G40118.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 7.6e-43 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G40136.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.7e-116 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G40076.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT1G11655.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G21475.1	protein_coding	Protein of unknown function (DUF506) 		hypothetical protein (DUF506);(source:Araport11)
AT1G21525.1	pseudogene		Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167 .	pseudogene of hypothetical protein;(source:Araport11)
AT1G70505.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G07725.1	protein_coding	exocyst subunit exo70 family protein H6	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein H6;(source:Araport11)
AT1G71015.1	protein_coding			plastid movement impaired protein;(source:Araport11)
AT1G34315.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G51055.1	protein_coding	FBD-like domain family protein		FBD-like domain family protein;(source:Araport11)
AT1G59885.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G59835.1	protein_coding			DNA-directed RNA polymerase II subunit RPB1-like protein;(source:Araport11)
AT1G80865.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G76965.1	protein_coding		Encodes a Protease inhibitor/seed storage/LTP family protein	hypothetical protein;(source:Araport11)
AT1G77095.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.8e-14 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G07473.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G07476.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G53705.1	protein_coding	aminoacyl-tRNA ligases;nucleotide binding;ATP binding		putative aminoacyl-tRNA ligase;(source:Araport11)
AT1G02965.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G09935.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT1G09812.1	protein_coding			multidrug resistance protein;(source:Araport11)
AT1G09665.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT1G09645.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G24570.1	protein_coding	Protein of unknown function (DUF707)		transmembrane protein, putative (DUF707);(source:Araport11)
AT1G48145.1	protein_coding			plant mobile domain protein;(source:Araport11)
AT1G03580.1	pseudogene			pseudogene of MATH domain/coiled-coil protein;(source:Araport11)
AT1G54385.1	protein_coding	ARM repeat superfamily protein	At1G54385 encodes the plant KASH protein SINE1; SINE1 interacts with SUN1 and SUN2, is colocalized with F-actin, and is localized at the nuclear envelope.	ARM repeat superfamily protein;(source:Araport11)
AT1G54215.1	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT1G36925.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G67025.1	protein_coding			wall-associated receptor kinase carboxy-terminal protein;(source:Araport11)
AT1G67325.1	protein_coding	Ran BP2/NZF zinc finger-like superfamily protein		Ran BP2/NZF zinc finger-like superfamily protein;(source:Araport11)
AT1G43245.1	protein_coding	SET domain-containing protein		SET domain-containing protein;(source:Araport11)
AT1G43205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1);(source:TAIR10)
AT1G04445.1	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT1G52325.1	protein_coding	Initiation factor eIF-4 gamma, MA3		Initiation factor eIF-4 gamma, MA3;(source:Araport11)
AT1G52415.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G62225.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G62305.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G79915.1	protein_coding	Putative methyltransferase family protein		Putative methyltransferase family protein;(source:Araport11)
AT1G22882.1	protein_coding	Galactose-binding protein	Encodes a member of the mid-SUN subfamily of SUN-domain proteins that is localized to both the nuclear envelope and the ER.  It is involved in early seed development and nuclear morphology. Secreted peptide which functions in plant growth and pathogen defense.	Galactose-binding protein;(source:Araport11)
AT1G62975.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G62935.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G47495.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G63105.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G21245.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G21323.1	protein_coding			dual specificity kinase;(source:Araport11)
AT1G21326.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT1G54095.1	protein_coding	Protein of unknown function (DUF1677)		DUF1677 family protein, putative (DUF1677);(source:Araport11)
AT1G64295.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G64385.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G18335.1	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G66045.1	protein_coding			reverse transcriptase-like protein;(source:Araport11)
AT1G66145.1	protein_coding	CLAVATA3/ESR-RELATED 18	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 18;(source:Araport11)
AT1G29355.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G10155.1	protein_coding	phloem protein 2-A10		phloem protein 2-A10;(source:Araport11)
AT1G33785.1	pseudogene			pseudogene of photosynthetic electron transfer B;(source:Araport11)
AT1G09483.1	protein_coding			myosin heavy chain, cardiac protein;(source:Araport11)
AT1G09486.1	pseudogene			pseudogene of Translation protein SH3-like family protein;(source:Araport11)
AT1G49405.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT1G49475.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT1G42740.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1);(source:TAIR10)
AT1G65985.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT1G53265.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G34095.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G11925.1	protein_coding	Stigma-specific Stig1 family protein	Encodes a Stigma-specific Stig1 family protein	Stigma-specific Stig1 family protein;(source:Araport11)
AT1G67785.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G61255.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G34910.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G51355.1	protein_coding			cyclin-dependent kinase inhibitor SMR3-like protein;(source:Araport11)
AT1G48405.1	protein_coding	Kinase interacting (KIP1-like) family protein		Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT1G69485.1	protein_coding	Ribosomal L32p protein family		Ribosomal L32p protein family;(source:Araport11)
AT1G33475.1	protein_coding	SNARE-like superfamily protein		SNARE-like superfamily protein;(source:Araport11)
AT1G14686.1	protein_coding	ENTH/ANTH/VHS superfamily protein		ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT5G07505.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.7e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G07475.1	protein_coding	Cupredoxin superfamily protein		Cupredoxin superfamily protein;(source:Araport11)
AT5G08790.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	induced by wounding, belongs to a large family of putative transcriptional activators with NAC domain.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT5G08770.1	protein_coding			topoisomerase I damage affected-like protein;(source:Araport11)
AT5G08660.1	protein_coding	Protein of unknown function (DUF668)		D-lactate dehydrogenase (DUF668);(source:Araport11)
AT5G08680.1	protein_coding	ATP synthase alpha/beta family protein	Encodes the mitochondrial ATP synthase beta-subunit.  This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level. The mRNA is cell-to-cell mobile.	ATP synthase alpha/beta family protein;(source:Araport11)
AT5G08710.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT5G08720.1	protein_coding		Encodes PIN2 PROMOTER BINDING PROTEIN 1 (PPP1), an evolutionary conserved plant-specific DNA binding protein that acts on transcription of PIN genes. Also named as HCF145. Mutations in HCF145 have reduced level of the tricistronic psaA-psaB-rps (small-subunit ribosomal protein)14 mRNA which encodes for the major subunits of the photosystem I (PSI). HCF145 binds to the 5'UTR of PSAA via a novel TMR domain. It functions to stabilize the PSAA transcript.	polyketide cyclase/dehydrase/lipid transporter;(source:Araport11)
AT5G08730.1	protein_coding	IBR domain-containing protein		IBR domain-containing protein;(source:Araport11)
AT5G08780.1	protein_coding	winged-helix DNA-binding transcription factor family protein		winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT5G34965.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G34945.1	pseudogene			pseudogene of Zinc-finger domain of monoamine-oxidase A repressor R1 protein;(source:Araport11)
AT5G34881.1	protein_coding	Protein of unknown function (DUF784)		inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT5G34883.1	protein_coding	Protein of unknown function (DUF784)		inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT5G34887.1	protein_coding	Protein of unknown function (DUF784)		inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT5G34905.1	protein_coding	Protein of unknown function (DUF784)		ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT5G34925.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.3e-38 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G36275.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.9e-34 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G13205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.1e-252 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT5G33806.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G34266.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein;(source:TAIR10)
AT5G34082.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.4e-97 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G33990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.0e-73 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34358.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT5G33624.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.9e-181 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G33898.1	protein_coding	Protein of unknown function (DUF3287)		hypothetical protein (DUF3287);(source:Araport11)
AT5G33533.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.9e-112 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G33715.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06140.1);(source:TAIR10)
AT5G34174.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 6.1e-57 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT5G28715.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G28776.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.6e-199 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT5G28773.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Putative retroelement, similar to putative reverse transcriptase;(source:TAIR10)
AT5G28765.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.9e-70 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G28785.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14630.1);(source:TAIR10)
AT5G28823.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G23395.1	protein_coding	Cox19-like CHCH family protein	Encodes Mia40, a component of the mitochondrial intermembrane space assembly machinery involved in the import pathway of the small intermembrane space proteins.	Cox19-like CHCH family protein;(source:Araport11)
AT5G34520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, contains similarity to Xenopus laevis replication protein A1             (SW:RFA1_XENLA), similar to contains similarity to Xenopus laevis replication protein A1             (SW:RFA1_XENLA);(source:TAIR10)
AT5G34665.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-62 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34686.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative myosin-like protein;(source:TAIR10)
AT5G34749.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein;(source:TAIR10)
AT5G34581.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G34602.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.3e-71 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G34728.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative myosin-like protein;(source:TAIR10)
AT5G34795.1	pseudogene			pseudogene of K-box region protein (DUF1985);(source:Araport11)
AT5G34707.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.6e-142 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34644.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.1e-50 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT1G35950.1);(source:TAIR10)
AT5G34623.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative transposon protein;(source:TAIR10)
AT5G34560.1	pseudogene			pseudogene of uridine kinase-like 4;(source:Araport11)
AT5G34480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.7e-49 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G34540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05080.1);(source:TAIR10)
AT5G30406.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.8e-131 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G29635.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 7.7e-111 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT5G30495.1	protein_coding	Fcf2 pre-rRNA processing protein		Fcf2 pre-rRNA processing protein;(source:Araport11)
AT5G29720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.7e-94 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT5G30584.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.1e-15 P-value blast match to GB:CAA28054 ORF (Ty1_Copia-element) (Drosophila melanogaster);(source:TAIR10)
AT5G29805.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.5e-33 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT5G29975.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-306 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G30060.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.9e-154 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G30341.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G30102.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.3e-270 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G30189.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.4e-179 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G30276.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.0e-99 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT5G34856.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.5e-111 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT5G34859.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.6e-08 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G34863.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.6e-173 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT5G34852.1	pseudogene			pseudogene of Intron maturase;(source:Araport11)
AT5G34864.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.3e-143 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G34855.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G38380.1);(source:TAIR10)
AT5G34865.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.5e-16 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi);(source:TAIR10)
AT5G34861.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.8e-10 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT5G34851.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G34866.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.8e-39 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34853.1	transposable_element_gene		Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1), AT2G30640 (MUG2), AT1G06740 (MUG3), AT5G16505 (MUG4), AT3G06940 (MUG5), AT5G48965 (MUG6), AT3G05850 (MUG7) and AT5G34853 (MUG8).	transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.7e-48 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G34867.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.7e-279 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G34854.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-96 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT5G34868.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-131 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G34857.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.7e-70 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT5G34862.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.4e-78 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G34858.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT5G25754.1	protein_coding	RNA polymerase I-associated factor PAF67		RNA polymerase I-associated factor PAF67;(source:Araport11)
AT5G25752.1	protein_coding	rhomboid-like protein 11	Chloroplast-localized rhomboid-like protein.	rhomboid-like protein 11 (RBL11); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT5G25640.1)
AT5G32800.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.2e-66 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G33125.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.4e-270 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32726.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein;(source:TAIR10)
AT5G32850.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.5e-178 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G33150.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT5G32750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.5e-224 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32925.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.0e-105 P-value blast match to GB:AAA66266 unknown protein ORF1 transposable element En-1 (CACTA-element) (Zea mays);(source:TAIR10)
AT5G32900.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.6e-05 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT5G32775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30700.1);(source:TAIR10)
AT5G32950.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.5e-33 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G32825.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-296 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT5G32975.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative transposase, similar to En/Spm-like transposon protein, putative;(source:TAIR10)
AT5G32875.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-79 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G33000.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G33075.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.5e-216 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT5G33025.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.0e-305 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G33050.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.2e-129 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT5G33100.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein             (GB:AC004483);(source:TAIR10)
AT5G21930.1	protein_coding	P-type ATPase of Arabidopsis 2	P-Type ATPase, mediates copper transport to chloroplast thylakoid lumen. Required for accumulation of copper-containing plastocyanin in the thylakoid lumen and for effective photosynthetic electron transport	P-type ATPase of Arabidopsis 2;(source:Araport11)
AT5G21970.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT5G21990.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808). Functions as a chaperone receptor at the chloroplast outer envelope, mediating Hsp70-dependent protein targeting to chloroplasts.   It has been localized to the ER membrane, interacts with the Sec translocon, and has a potential function in post-translational protein transport into the ER. The mRNA is cell-to-cell mobile.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G22050.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G22020.1	protein_coding	Calcium-dependent phosphotriesterase superfamily protein		Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT5G22070.1	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G22010.1	protein_coding	replication factor C1	Encodes RFC1, the largest subunit of replication factor C.  Mediates genomic stability and transcriptional gene silencing.	replication factor C1;(source:Araport11)
AT5G21280.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G22100.1	protein_coding	RNA cyclase family protein		RNA cyclase family protein;(source:Araport11)
AT5G22150.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G21960.1	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G22160.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G21950.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G22170.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G21940.1	protein_coding			hybrid signal transduction histidine kinase M-like protein;(source:Araport11)
AT5G22200.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT5G21920.1	protein_coding	YGGT family protein	One of four Arabidopsis homologs of bacterial ymlg proteins.	YGGT family protein;(source:Araport11)
AT5G21535.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G22190.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G22210.1	protein_coding			aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B;(source:Araport11)
AT5G22180.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G22140.1	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT5G21900.1	protein_coding	RNI-like superfamily protein	Contributes to UV tolerance through nucleotide excision repair.	RNI-like superfamily protein;(source:Araport11)
AT5G22120.1	protein_coding			coiled-coil protein;(source:Araport11)
AT5G21910.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G22110.1	protein_coding	DNA polymerase epsilon subunit B2	Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic , rapidly dividing regions.	DNA polymerase epsilon subunit B2;(source:Araport11)
AT5G22090.1	protein_coding	Protein of unknown function (DUF3049)	EAR1 is a negative regulator of ABA signaling that enhances the activity of all six clade A PP2Cs (ABI1, ABI2, HAB1, HAB2, AHG1, AHG3) by interacting with and releasing the N-terminal autoinhibition of these proteins. EAR1 indirectly affects OST1 activity through enhancing ABI1 activity. The EAR1 141-287 fragment is sufficient for the functioning of EAR1 in ABA responses; the 131-248 region harbors an intrinsically disordered region and only 249-278 can form a predicted regular structure. EAR1 is located in the ER, nuclei, and cytoplasm; ABA signaling promotes the translocation of EAR1 from the ER and/or cytoplasm to the nucleus. Mutations showed that it functions in seed germination, primary root growth, and drought tolerance.	FAF-like protein (DUF3049);(source:Araport11)
AT5G22080.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G22040.1	protein_coding			ubiquitin carboxyl-terminal hydrolase;(source:Araport11)
AT5G13485.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.7e-12 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT5G13475.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.7e-39 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT5G28253.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.2e-60 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G28263.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.6e-72 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G28266.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, includes At2g06610, At5g28266, At3g42620, At4g07696, At2g06690, At2g16160, At2g05480, At2g12140, At1g45080, At2g16330;(source:TAIR10)
AT5G28285.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 9.8e-101 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT5G28335.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.8e-178 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G28295.1	protein_coding			hypothetical protein;(source:Araport11)
KATE	protein_coding		kinesin-related gene, identified by genomic Southern blotting, not yet sequenced	
AT5G01750.2	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT5G27840.2	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein	Encodes a Type One Protein Phosphatase that acts as a nucleocytoplasmic negative regulator of tip growth. Mutants affect pollen germination, pollen tube growth, and root hair growth. It acts genetically downstream of ANX1 (AT3G04690) and ANX2 (AT5G28680) and is functionally redundant with ATUNIS1/TOPP9 (AT3G05580).	Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT5G35680.2	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT5G13750.2	protein_coding	zinc induced facilitator-like 1		zinc induced facilitator-like 1;(source:Araport11)
AT5G05000.2	protein_coding	translocon at the outer envelope membrane of chloroplasts 34	Outer membrane GTPase protein that may function in import of nuclear encoded proteins into the chloroplast. Phosphorylation of the G-domains regulate translocon assembly.	translocon at the outer envelope membrane of chloroplasts 34;(source:Araport11)
AT5G57655.2	protein_coding	xylose isomerase family protein		xylose isomerase family protein;(source:Araport11)
AT5G54590.2	protein_coding	Protein kinase superfamily protein	Splice variant At5g54590.2 encodes CRLK1 (440-amino acid in length) calcium/calmodulin-regulated receptor-like kinase crucial for cold tolerance. CRLK1 is Primarily localized in the plasma membrane.	Protein kinase superfamily protein;(source:Araport11)
AT5G45775.2	protein_coding	Ribosomal L5P family protein		Ribosomal L5P family protein;(source:Araport11)
AT5G47180.2	protein_coding	Plant VAMP (vesicle-associated membrane protein) family protein		Plant VAMP (vesicle-associated membrane protein) family protein;(source:Araport11)
AT5G16540.2	protein_coding	zinc finger nuclease 3	Encodes a zinc finger protein.	zinc finger nuclease 3;(source:Araport11)
AT5G58470.2	protein_coding	TBP-associated factor 15B		TBP-associated factor 15B;(source:Araport11)
AT5G62760.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G06980.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G59890.2	protein_coding	actin depolymerizing factor 4	actin depolymerizing factor 4 (ADF4) mRNA, complete cds	actin depolymerizing factor 4;(source:Araport11)
AT5G42080.2	protein_coding	dynamin-like protein	Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching.  Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.	dynamin-like protein;(source:Araport11)
AT5G63890.2	protein_coding	histidinol dehydrogenase	Encodes histidinol dehydrogenase. Up-regulated in response to UV-B.	histidinol dehydrogenase;(source:Araport11)
AT5G41700.2	protein_coding	ubiquitin conjugating enzyme 8	One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 The mRNA is cell-to-cell mobile.	ubiquitin conjugating enzyme 8;(source:Araport11)
AT5G54940.2	protein_coding	Translation initiation factor SUI1 family protein		Translation initiation factor SUI1 family protein;(source:Araport11)
AT5G08535.2	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT5G61880.2	protein_coding	Protein Transporter, Pam16	Encodes PAM16L, a paralog of PAM16 (AT3G59280).	Protein Transporter, Pam16;(source:Araport11)
AT5G53860.2	protein_coding	embryo defective 2737	Encodes a plant-specific protein with a domain similar to the central cysteine-rich domain of DnaJ proteins. It is involved in chloroplast and leaf development.  This is the predominant isoform of the protein.	embryo defective 2737;(source:Araport11)
AT5G66040.2	protein_coding	sulfurtransferase protein 16	Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity  in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo. The mRNA is cell-to-cell mobile.	sulfurtransferase protein 16;(source:Araport11)
AT5G24590.2	protein_coding	TCV-interacting protein	Member of NAc protein family. Interacts with  turnip crinkle virus (TCV) capsid protein. Transcription factor  involved in regulating the defense response of Arabidopsis to TCV.	TCV-interacting protein;(source:Araport11)
AT5G41810.2	protein_coding			Avr9/Cf-9 rapidly elicited protein;(source:Araport11)
AT5G48655.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G28850.2	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT5G01230.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a tRNA methyltransferase that mediates the 2'-O-ribose methylation of selected tRNA species in the anticodon loop. Mutation of this gene compromises plant immunity against bacteria.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G29000.2	protein_coding	Homeodomain-like superfamily protein	MYB-CC family member. PHL1 acts redundantly with PHR1 to regulate responses to Pi starvation.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G59400.2	protein_coding			PGR5-like A protein;(source:Araport11)
AT5G14930.2	protein_coding	senescence-associated gene 101	encodes an acyl hydrolase involved in senescence .	senescence-associated gene 101;(source:Araport11)
AT5G20040.2	protein_coding	isopentenyltransferase 9	Encodes tRNA isopentenyltransferase AtIPT9.	isopentenyltransferase 9;(source:Araport11)
AT5G25280.2	protein_coding	serine-rich protein-related		serine-rich protein-like protein;(source:Araport11)
AT5G52210.2	protein_coding	GTP-binding protein 1	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	GTP-binding protein 1;(source:Araport11)
AT4G11830.2	protein_coding	phospholipase D gamma 2	Encodes one of three phospholipase D enzymes of the gamma class.	phospholipase D gamma 2;(source:Araport11)
AT4G27080.2	protein_coding	PDI-like 5-4	putative protein	PDI-like 5-4;(source:Araport11)
AT4G27120.2	protein_coding			DDRGK domain protein;(source:Araport11)
AT4G29670.2	protein_coding	atypical CYS  HIS rich thioredoxin 2	Encodes a member of the thioredoxin family protein.  Located in the chloroplast.  Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate   dehydrogenase.	atypical CYS HIS rich thioredoxin 2;(source:Araport11)
AT4G19690.2	protein_coding	iron-regulated transporter 1	The gene encodes Fe2+ transporter protein. It is a member of the Zrt/Irt-like protein (ZIP) family of transporters. AtIRT1 has broad specificity for divalent heavy metals, mediating the transport of zinc, manganese, cobalt and cadmium under Fe-deficient conditions. IRT1 is monoubiquitinated to promote endocytic trafficking. The mRNA is cell-to-cell mobile.	iron-regulated transporter 1;(source:Araport11)
AT4G02430.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G02640.2	protein_coding	bZIP transcription factor family protein	Encodes a basic leucine zipper (bZIP) transcription factor AtbZIP10.  AtbZIP10 shuttles between the nucleus and the cytoplasm.  It binds consensus G- and C-box DNA sequences.  AtbZIP10 acts antagonistically with LSD1 in both pathogen-induced hypersensitive response and basal defense responses.	bZIP transcription factor family protein;(source:Araport11)
AT4G16280.4	protein_coding	RNA binding;abscisic acid binding	Flowering time control protein (FCA)	flowering time control protein FCA;(source:Araport11)
AT4G16280.3	protein_coding	RNA binding;abscisic acid binding	Involved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha, beta, delta and gamma) are produced by alternative splicing. Involved in RNA-mediated chromatin silencing. At one point it was believed to act as an abscisic acid receptor but the paper describing that function was retracted.	flowering time control protein FCA;(source:Araport11)
AT4G16280.2	protein_coding	RNA binding;abscisic acid binding	Involved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha, beta, delta and gamma) are produced by alternative splicing. Involved in RNA-mediated chromatin silencing. At one point it was believed to act as an abscisic acid receptor but the paper describing that function was retracted.	flowering time control protein FCA;(source:Araport11)
AT4G20380.2	protein_coding	LSD1 zinc finger family protein	LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge	LSD1 zinc finger family protein;(source:Araport11)
AT4G03205.2	protein_coding	Coproporphyrinogen III oxidase		Coproporphyrinogen III oxidase;(source:Araport11)
AT4G31550.2	protein_coding	WRKY DNA-binding protein 11	member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.	WRKY DNA-binding protein 11;(source:Araport11)
AT4G10100.2	protein_coding	co-factor for nitrate, reductase and xanthine dehydrogenase 7	molybdenum cofactor synthesis family protein, similar to Molybdenum cofactor synthesis protein 2 small subunit (Molybdopterin- synthase small subunit) (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) (Homo sapiens); contains TIGRFAM TIGR01682: molybdopterin converting factor, subunit 1; sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.	co-factor for nitrate, reductase and xanthine dehydrogenase 7;(source:Araport11)
AT4G34135.2	protein_coding	UDP-glucosyltransferase 73B2	The At4g34135 gene encodes a flavonol 7-O-glucosyltransferase (EC 2.4.1.237) that glucosylates also with a 20 fold lower activity flavonols (kaempferol and quercetin) at the 3-O-position.	UDP-glucosyltransferase 73B2;(source:Araport11)
AT4G27410.2	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	Encodes a NAC transcription factor induced in response to desiccation. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT4G30480.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808).  Interacts with Hsp90/Hsp70 as co-chaperone.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G09760.2	protein_coding	Protein kinase superfamily protein	encodes a choline synthase whose gene expression is induced by high salt and mannitol.	Protein kinase superfamily protein;(source:Araport11)
AT4G29360.2	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT4G35450.3	protein_coding	ankyrin repeat-containing protein 2	Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.	ankyrin repeat-containing protein 2;(source:Araport11)
AT4G35450.2	protein_coding	ankyrin repeat-containing protein 2	Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.	ankyrin repeat-containing protein 2;(source:Araport11)
AT3G04830.2	protein_coding	Protein prenylyltransferase superfamily protein		Protein prenylyltransferase superfamily protein;(source:Araport11)
AT3G56860.2	protein_coding	UBP1-associated protein 2A	encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.	UBP1-associated protein 2A;(source:Araport11)
AT3G10720.2	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily		Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT3G50670.2	protein_coding	U1 small nuclear ribonucleoprotein-70K	Encodes U1 snRNP 70K	U1 small nuclear ribonucleoprotein-70K;(source:Araport11)
AT3G16450.2	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G49010.2	protein_coding	breast basic conserved 1	Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).	breast basic conserved 1;(source:Araport11)
AT3G48880.2	protein_coding	RNI-like superfamily protein	Encodes an F-box protein, SNIPER4, that regulates the turnover of MUSE13 and MUSE14, redundant TRAF proteins serving as adaptors in the SCFCRP1 complex to facilitate the turnover of nucleotide-binding domain and leucine-rich repeats (NLR) immune receptors.	RNI-like superfamily protein;(source:Araport11)
AT3G14840.2	protein_coding	Leucine-rich repeat transmembrane protein kinase	Encodes LRR-RLK protein that  is localized to the plasma membrane and is involved in regulation of plant innate immunity to microbes. LIK1 is phosphorylated by CERK1, a kinase involved in chitin perception. The mRNA is cell-to-cell mobile.	Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT3G58710.2	protein_coding	WRKY DNA-binding protein 69	member of WRKY Transcription Factor; Group II-e	WRKY DNA-binding protein 69;(source:Araport11)
AT3G03270.2	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	HRU1 is a hypoxia induced universal stress protein. It exists as two splice variants with AT3G03270.2 , which contains a putative dimerization domain, the predominant transcript found under anoxia. It is induced by RAP2.12. Subcellular localization is dynamic; under anoxia the localization of HRU1 shifts from cytoplasm to the plasma membrane.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G54380.2	protein_coding	SAC3/GANP/Nin1/mts3/eIF-3 p25 family		SAC3/GANP/Nin1/mts3/eIF-3 p25 family;(source:Araport11)
AT3G54480.2	protein_coding	SKP1/ASK-interacting protein 5	Encodes an SKP1 interacting partner (SKIP5).	SKP1/ASK-interacting protein 5;(source:Araport11)
AT3G57810.2	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G44310.2	protein_coding	nitrilase 1	Mutants are resistant to indole-3-acetonitrile (IAN). NIT1 catalyzes the terminal activation step in indole-acetic acid biosynthesis. Predominantly expressed isoform of nitrilase isoenzyme family.   Aggregation of NIT1 in cells directly abutting wound sites is one of the earliest events associated with wound and herbicide-induced cell death.  The protein undergoes thiolation following treatment with the  oxidant tert-butylhydroperoxide. It is also involved in the conversion of IAN to IAM (indole-3-acetamide) and other non-auxin-related metabolic processes. The mRNA is cell-to-cell mobile.	nitrilase 1;(source:Araport11)
AT3G09150.2	protein_coding	phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)	Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin.  Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase.  It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.	phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2);(source:Araport11)
AT3G20280.2	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G20270.2	protein_coding	lipid-binding serum glycoprotein family protein	Encodes one of the two LBP/BPI related proteins (AT1G04970/LBR-1, AT3G20270/LBR-2) that bind to LPS directly and regulate PR1 expression.	lipid-binding serum glycoprotein family protein;(source:Araport11)
AT3G07760.2	protein_coding	Sterile alpha motif (SAM) domain-containing protein	Ortholog of Peach WEEP gene containing a  sterile alpha motif. In peach, WEEP is responsible for pendulous branching phenotype. However in Arabidopsis no morphological branching defect has been observed in mutant lines.	Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G14230.2	protein_coding	related to AP2 2	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	related to AP2 2;(source:Araport11)
AT3G13224.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Belongs to a member of the RNA-binding glycine-rich (RBG) gene superfamily.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G17240.2	protein_coding	lipoamide dehydrogenase 2	lipoamide dehydrogenase precursor	lipoamide dehydrogenase 2;(source:Araport11)
AT3G11930.2	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G16520.2	protein_coding	UDP-glucosyl transferase 88A1		UDP-glucosyl transferase 88A1;(source:Araport11)
AT3G23280.2	protein_coding	XB3 ortholog 5 in Arabidopsis thaliana	Encodes a ubiquitin ligase that is a novel player in ethylene signaling involved in negatively regulating apical hook curvature, with alternative splicing controlling dual targeting to the nuclear and cytoplasmic compartments.	hypothetical protein;(source:Araport11)
AT3G06850.2	protein_coding	2-oxoacid dehydrogenases acyltransferase family protein	dihydrolipoamide branched chain acyltransferase	2-oxoacid dehydrogenases acyltransferase family protein;(source:Araport11)
AT3G06720.2	protein_coding	importin alpha isoform 1	Encodes importin alpha involved in nuclear import.	importin alpha isoform 1;(source:Araport11)
AT3G03780.2	protein_coding	methionine synthase 2	Encodes a cytosolic methionine synthase, involved in methionine regeneration via the activated methyl cycle (or SAM cycle)	methionine synthase 2;(source:Araport11)
AT3G03890.2	protein_coding	FMN binding		FMN binding protein;(source:Araport11)
AT3G55630.2	protein_coding	DHFS-FPGS homolog D	Encodes one of the three folylpolyglutamate synthetase isoforms (FPGSs): FPGS1 (At5g05980, plastidic), FPGS2 (At3g10160, mitochondrial) and FPGS3 (At3g55630, cytosolic).	DHFS-FPGS homolog D;(source:Araport11)
AT3G08580.2	protein_coding	ADP/ATP carrier 1	mitochondrial ADP/ATP carrier	ADP/ATP carrier 1;(source:Araport11)
AT2G26430.2	protein_coding	arginine-rich cyclin 1	Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.	arginine-rich cyclin 1;(source:Araport11)
AT2G38860.2	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes protease I (pfpI)-like protein YLS5.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT2G39730.2	protein_coding	rubisco activase	Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco. Involved in jasmonate-induced leaf senescence.	rubisco activase;(source:Araport11)
AT2G41070.2	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G28290.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral  homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates  flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation.  Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms  differs in juvenile and in adult tissues. The C-terminal domain is not required for activity. The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G41430.2	protein_coding	dehydration-induced protein (ERD15)	Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a  CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.	dehydration-induced protein (ERD15);(source:Araport11)
AT2G14120.2	protein_coding	dynamin related protein	Encodes a dynamin related protein. DRPs are self-assembling GTPasse involved in fission and fusion of membranes. DRP3B functions in mitochondrion and peroxisome fission in combination with DRP3A.	dynamin related protein;(source:Araport11)
AT2G26980.2	protein_coding	CBL-interacting protein kinase 3	encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.	CBL-interacting protein kinase 3;(source:Araport11)
AT2G33830.2	protein_coding	Dormancy/auxin associated family protein		Dormancy/auxin associated family protein;(source:Araport11)
AT2G39190.2	protein_coding	Protein kinase superfamily protein	member of ATH subfamily	Protein kinase superfamily protein;(source:Araport11)
AT2G44920.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a pentapeptide-repeat protein (PRP) composed of 25 repeats capped by N- and C-terminal a-helices. Unlike other PRPs, At2g44920 consists exclusively of type II b-turns	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G44120.2	protein_coding	Ribosomal protein L30/L7 family protein		Ribosomal protein L30/L7 family protein;(source:Araport11)
AT2G20820.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G45740.2	protein_coding	peroxin 11D	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. The mRNA is cell-to-cell mobile.	peroxin 11D;(source:Araport11)
AT2G25625.2	protein_coding			histone deacetylase-like protein;(source:Araport11)
AT2G21620.2	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	Encodes gene that is induced in response to desiccation; mRNA expression is seen 10 and 24 hrs after start of desiccation treatment.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT2G32710.2	protein_coding	Cyclin-dependent kinase inhibitor family protein	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI). A member of seven KRP genes found in Arabidopsis thaliana. Negative regulator of cell division. Expressed in actively dividing cells.	Cyclin-dependent kinase inhibitor family protein;(source:Araport11)
AT2G32060.2	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT2G32060.3	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT2G46830.2	protein_coding	circadian clock associated 1	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. CCA1 binds the GI promoter.	circadian clock associated 1;(source:Araport11)
AT2G46800.2	protein_coding	zinc transporter of Arabidopsis thaliana	Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis.	zinc transporter;(source:Araport11)
AT2G45670.2	protein_coding	calcineurin B subunit-related	Encodes an acyl-CoA: lysophosphatidylethanolamine acyltransferase with 20:0-CoA being the best acyl donor. Mutations adversely affect the growth of plants and result in decreased lipid content in roots and seeds.	calcineurin B subunit-like protein;(source:Araport11)
AT2G45560.2	protein_coding	cytochrome P450, family 76, subfamily C, polypeptide 1	cytochrome P450 monooxygenase	cytochrome P450, family 76, subfamily C, polypeptide 1;(source:Araport11)
AT2G39410.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G16890.2	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G36000.2	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G02090.2	protein_coding	Proteasome component (PCI) domain protein	encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.	Proteasome component (PCI) domain protein;(source:Araport11)
AT1G59640.2	protein_coding	BIG PETAL P	A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size.  BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS.	transcription factor BIG PETAL P (BPE);(source:Araport11)
AT1G01100.2	protein_coding	60S acidic ribosomal protein family	Co-orthologous gene of large ribosomal subunit protein RPP1.	60S acidic ribosomal protein family;(source:Araport11)
AT1G15930.2	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT1G23970.2	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT1G22700.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G54730.3	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G54730.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G27770.2	protein_coding	autoinhibited Ca2+-ATPase 1	Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.	autoinhibited Ca2+-ATPase 1;(source:Araport11)
AT1G02500.2	protein_coding	S-adenosylmethionine synthetase 1	encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity.	S-adenosylmethionine synthetase 1;(source:Araport11)
AT1G63970.2	protein_coding	isoprenoid F	Encodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The protein's activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype.	isoprenoid F;(source:Araport11)
AT1G47210.2	protein_coding	cyclin-dependent protein kinase 3;2		cyclin-dependent protein kinase 3;(source:Araport11)
AT1G60650.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain	Encodes one of the zinc finger-containing glycine-rich RNA-binding proteins involved in cold tolerance: AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b), AT5G04280 (AtRZ-1c). It also, along with AtRZ-1c, plays important roles in plant development, pre- mRNA splicing, and general gene expression.	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT1G80380.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G51520.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G66760.2	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G16460.2	protein_coding	rhodanese homologue 2	encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast.  Can also act as a mercaptopyruvate sulfurtransferase.	rhodanese homologue 2;(source:Araport11)
AT1G24260.2	protein_coding	K-box region and MADS-box transcription factor family protein 	Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G13220.2	protein_coding	nuclear matrix constituent protein-related	Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. Member of a small gene family in Arabidopsis containing 4 proteins (LNC1-4 or CRWN 1-4) with redundant functions in protection from oxidative damage, control of nuclear morphology and degradation of ABI5.	nuclear matrix constituent protein-like protein;(source:Araport11)
AT1G45474.2	protein_coding	photosystem I light harvesting complex gene 5	Encodes a component of the light harvesting complex of photosystem I.	photosystem I light harvesting complex protein 5;(source:Araport11)
AT1G23380.2	protein_coding	KNOTTED1-like homeobox gene 6	homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.	homeobox protein knotted-1-like 6;(source:Araport11)
AT1G07640.2	protein_coding	Dof-type zinc finger DNA-binding family protein	A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis. PEAR protein involved in the formation of a short-range concentration gradient that peaks at protophloem sieve elements, and activates gene expression that promotes radial growth. Locally promotes transcription of inhibitory HD-ZIP III genes, and thereby establishes a negative-feedback loop that forms a robust boundary that demarks the zone of cell division.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT1G60850.2	protein_coding	DNA-directed RNA polymerase family protein		DNA-directed RNA polymerase family protein;(source:Araport11)
AT1G77080.4	protein_coding	K-box region and MADS-box transcription factor family protein 	MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G77080.2	protein_coding	K-box region and MADS-box transcription factor family protein 	MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G77080.3	protein_coding	K-box region and MADS-box transcription factor family protein 	MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G07350.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a serine/arginine rich-like protein, SR45a. Involved in the regulation of stress-responsive alternative splicing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G02840.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	SR34/SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G79650.2	protein_coding	Rad23 UV excision repair protein family	Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.	Rad23 UV excision repair protein family;(source:Araport11)
AT1G67360.2	protein_coding	Rubber elongation factor protein (REF)	Encodes a small rubber particle protein homolog.  Plays dual roles as positive factors for tissue growth and development and in drought stress responses.	Rubber elongation factor protein (REF);(source:Araport11)
AT1G27450.2	protein_coding	adenine phosphoribosyl transferase 1	Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP.	adenine phosphoribosyl transferase 1;(source:Araport11)
AT1G31070.2	protein_coding	N-acetylglucosamine-1-phosphate uridylyltransferase 1	Encodes a protein that functions as an N-acetylglucosamine-1-phosphate uridylyltransferase that catalyzes the formation of UDP-N-acetylglucosamine (UDP-GlcNAc). This is an essential precursor for glycolipid and glycoprotein synthesis and is also used for regulatory protein modification in signaling pathways. The enzyme can also catalyze the reverse reaction using both UDP-GlcNAc and the less common UDP-N-acetylgalactosamine as substrates.	N-acetylglucosamine-1-phosphate uridylyltransferase 1;(source:Araport11)
AT1G76405.2	protein_coding			outer envelope pore 21B-like protein;(source:Araport11)
AT1G52870.2	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT1G19010.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G67700.2	protein_coding			multidrug resistance protein;(source:Araport11)
RPW8.2	unknown		Resistance locus present in accession Ms-0 that confers resistance to powdery mildew. Absent in Col-0. Would be located around At3g50470. Targeted to the interfacial membrane encasing the fungal haustorium.	
GUP1	unknown		mutants have epinastic leaves and cotyledons when grown in vitro, have increased sensitivity to IAA	
GUP2	unknown		mutants have epinastic leaves and cotyledons when grown in vitro, have increased sensitivity to IAA	
FBR	unknown		Fumonisin B1-Resistant, a programmed cell death eliciting toxin produced by the necrotrophic fungal plant pathogen  Fusarium moniliforme. Cloning is in progress. Preliminary analysis suggests a possible ncRNA gene between At3g24225 and At3g24230.	
XAV	unknown		Homozygote mutants are pale yellow and die at the seedling stage, in heterozygotes the youngest leaves are yellow-green	
RD	unknown		a genetic locus that exhibits broad and roundish leaves, short petioles, and late flowering. This may be similar to Rotunda (RON) genes.	
PSV	unknown		PSEUDOVERTICILLATA	
LY	unknown		Lycopodioformia (Forked inflorescence) gene	
DN	unknown		A genetic locus involved in regulating flowering time.	
LC	unknown		light green mutant	
CHM3	unknown		Mutant phenotype: cotyledons light green, leaves light yellow green, young rosette leaves yellow green	
ECO1	unknown			
GHO	unknown		A recessive mutation that when homozygous produces viable albino plants. Maps on chromosome 4, 25 cM below FCA.	
VI	unknown		Viridis mutants are defective in chlorophyll a and b, as well as other photosynthetic pigments and cofactors derived from leucine metabolism.	
SPR2	unknown		a viviparous recessive spermine-resistant mutant of Arabidopsis thaliana	
FRC1	unknown		a genetic locus involved in trichome branch formation. genetically mapped on chr 3, tightly linked to cer7.	
FRC3	unknown		a genetic locus involved in trichome branch formation. genetically mapped on chr 4, app. 3 cM south of CAPS marker g4539	
FRC4	unknown		a genetic locus closely linked to er on chr 2. recessive mutation has defect in trichome branch formation.	
SHL1	unknown		Light-dependent negative regulator of photomorphogenesis, mutants are hyperresponsive to light.	
18S RRNA	ribosomal_rna		18S ribosomal RNA, nuclear encoded	
25S RRNA	ribosomal_rna		This gene encodes for 25S ribosomal RNA, which is a component of the large subunit of the ribosome and is thought to play a role in the formation of peptide bonds during protein synthesis. Multiple copies of the gene are located on nucleolar organizer regions.(NORs) at one end of chromosomes 2 and 4.	
5.8S RRNA	ribosomal_rna		gene for 5.8S rRNA, which is a component of the 60S large subunit of the cytosolic ribosome	
ARP1	unknown		mutant exhibits altered RNase profiles.	
CAM1	protein_coding		has role in regulation of starch metabolism and floral initiation.	
IRE1	unknown		Mutation in this genetic locus exhibits enhanced shoot development at sub-optimal concentrations of cytokinin. Genetic locus maps on chr 1 near CAPS marker PVV4.	
DST1	unknown		Encodes unstable mRNA.mRNAs encoded by this gene family share a sequence element called DST in their 3' untranslated region (UTR) which has been shown to target otherwise stable reporter transcripts for rapid turnover in plants.	
CIM7	unknown		a genetic locus involved in systemic acquired resistance. Mutant lines exhibit constitutive expression of PR1 promoter-reporter transgene and has high levels of salicylic acid.	
PNT2	unknown		A genetic locus involved in cell wall synthesis and GPI-anchor synthesis. Mutants have radially swollen embryos and are embryo lethal. Also GPI-anchored proteins are reduced in the mutant.	
PNT3	unknown		A genetic locus involved in cell wall synthesis and GPI-anchor synthesis. Mutants have radially swollen embryos and are embryo lethal. Also GPI-anchored proteins are reduced in the mutant.	
PNT4	unknown		A genetic locus involved in cell wall synthesis and GPI-anchor synthesis. Mutants have radially swollen embryos and are embryo lethal. Also GPI-anchored proteins are reduced in the mutant.	
HYP2	unknown		QTL responsible for natural variation in light and hormone response between Cape Verde Islands (Cvi) and Landsberg erecta (Ler), may correspond to erecta mutation.  The HYP2 locus exemplifies the difficulty in distinguishing between a single gene with effects in multiple environments and multiple genes in tight linkage with effects in specific environments. HYP2 has effects in blue, brassinazole  and dark environments that are due to erecta but a separate far-red phenotype that is likely not due to erecta but to another tightly linked gene. May be allelic to VLF1.	
HYP1	unknown		QTL responsible for natural variation in light and hormone response between the Cape Verde Islands (Cvi) and Landsberg erecta (Ler)	
AT5G66250.3	protein_coding	kinectin-related		kinectin-like protein;(source:Araport11)
AT5G66250.2	protein_coding	kinectin-related		kinectin-like protein;(source:Araport11)
AT5G66120.2	protein_coding	3-dehydroquinate synthase, putative		3-dehydroquinate synthase;(source:Araport11)
AT5G66210.2	protein_coding	calcium-dependent protein kinase 28	Calcium Dependent Protein Kinase. Functions in the BIK1 innate immune response pathway.	calcium-dependent protein kinase 28;(source:Araport11)
AT5G66030.2	protein_coding	Golgi-localized GRIP domain-containing protein	Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in  AtGRIP is crucial for Golgi localization.	Golgi-localized GRIP domain-containing protein;(source:Araport11)
AT5G66240.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a WD40-repeat protein that interacts with the E3 Cullin Ring Ligase subunit DDB1a and is involved in secondary wall modification and thickening by regulating the degradation of specific proteins. RNAi-mediated silencing results in anther indehiscence and infertility.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G05180.2	protein_coding			myosin heavy chain, striated protein;(source:Araport11)
AT5G52495.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAA);(source:Araport11, TAIR10)
AT5G52355.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
AT5G48880.2	protein_coding	peroxisomal 3-keto-acyl-CoA thiolase 2	Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.	peroxisomal 3-keto-acyl-CoA thiolase 2;(source:Araport11)
AT5G48835.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met (anticodon: CAT);(source:Araport11, TAIR10)
AT5G44705.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: AGT);(source:Araport11, TAIR10)
AT5G44740.2	protein_coding	Y-family DNA polymerase H	Y-family DNA polymerase. Catalyses translesion synthesis in response to UV damage. Functionally interacts with PCNA2. Has a ubiquitin binding motif.	Y-family DNA polymerase H;(source:Araport11)
AT5G48385.1	protein_coding	FRIGIDA-like protein		FRIGIDA-like protein;(source:Araport11)
AT5G37795.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT5G49210.2	protein_coding			stress response NST1-like protein;(source:Araport11)
AT5G58140.3	protein_coding	phototropin 2	Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation.  Localized to the Golgi apparatus under the induction of blue light. The mRNA is cell-to-cell mobile.	phototropin 2;(source:Araport11)
AT5G58140.2	protein_coding	phototropin 2	Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation.  Localized to the Golgi apparatus under the induction of blue light. The mRNA is cell-to-cell mobile.	phototropin 2;(source:Araport11)
AT5G58140.4	protein_coding	phototropin 2	Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation.  Localized to the Golgi apparatus under the induction of blue light. The mRNA is cell-to-cell mobile.	phototropin 2;(source:Araport11)
AT5G65670.2	protein_coding	indole-3-acetic acid inducible 9	auxin (indole-3-acetic acid) induced gene The mRNA is cell-to-cell mobile.	indole-3-acetic acid inducible 9;(source:Araport11)
AT5G44930.2	protein_coding	Exostosin family protein	Encodes a putative arabinosyltransferase that is associated with arabinan biosynthesis and is not redundant with ARAD1.  The two glycosyltransferases may function in complexes held together by disulfide bridges.	Exostosin family protein;(source:Araport11)
AT5G44920.2	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein	Encodes a KASH domain protein that localizes to the nuclear envelope and affects nuclear morphology.	Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT5G45050.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class)	Encodes a member of the WRKY Transcription Factor (Group II-e) family.	Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G41265.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT5G66567.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT5G66564.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT5G66562.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT5G53902.1	small_nucleolar_rna	U3B; snoRNA	U3 small nucleolar RNA	U3B,snoRNA;(source:Araport11)
AT5G40780.2	protein_coding	lysine histidine transporter 1	Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll.	lysine histidine transporter 1;(source:Araport11)
AT5G53900.2	protein_coding	Serine/threonine-protein kinase WNK (With No Lysine)-related		Serine/threonine-protein kinase WNK (With No Lysine)-like protein;(source:Araport11)
AT5G58960.2	protein_coding	Plant protein of unknown function (DUF641)	Mutant plants display impaired light-regulation of the hypocotyl randomization response.	glucose-6-phosphate isomerase, putative (DUF641);(source:Araport11)
AT5G23450.2	protein_coding	long-chain base (LCB) kinase 1	Encodes a sphingosine kinase that specifically phosphorylates D-erythro-dihydrosphingosine (DHS), but not N-acetyl-DHS or D-threo-DHS. It also also phosphorylates D-erythro-sphingosine, trans-4, trans-8-sphingadienine and phytosphingosine.	long-chain base (LCB) kinase 1;(source:Araport11)
AT5G23430.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G53300.2	protein_coding	ubiquitin-conjugating enzyme 10	Encodes a ubiquitin conjugating enzyme.	ubiquitin-conjugating enzyme 10;(source:Araport11)
AT5G62480.2	protein_coding	glutathione S-transferase tau 9	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase tau 9;(source:Araport11)
AT5G62470.2	protein_coding	myb domain protein 96	Encodes a R2R3 type Myb transcription factor whose expression is strongly induced by abscisic acid. Mediates abscisic acid signaling during drought stress response.	myb domain protein 96;(source:Araport11)
AT5G05985.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: CAC);(source:Araport11, TAIR10)
AT5G05945.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT5G05987.1	protein_coding	prenylated RAB acceptor 1.A2		prenylated RAB acceptor 1.A2;(source:Araport11)
AT5G05270.2	protein_coding	Chalcone-flavanone isomerase family protein		Chalcone-flavanone isomerase family protein;(source:Araport11)
AT5G05310.3	protein_coding	TLC ATP/ADP transporter		TLC ATP/ADP transporter;(source:Araport11)
AT5G05310.2	protein_coding	TLC ATP/ADP transporter		TLC ATP/ADP transporter;(source:Araport11)
AT5G05490.2	protein_coding	Rad21/Rec8-like family protein	Encodes a RAD21-like gene essential for meiosis. Encodes a 617 a.a. protein that is slightly shorter in the N-terminus than SYN1 BP2.	Rad21/Rec8-like family protein;(source:Araport11)
AT5G59055.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT5G45100.2	protein_coding	SBP (S-ribonuclease binding protein) family protein	Encodes one of the BRGs (BOI-related gene) involved in resistance to Botrytis cinerea.	SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT5G45095.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G51630.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G06125.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAG);(source:Araport11, TAIR10)
AT5G06130.2	protein_coding	chaperone protein dnaJ-related	Encodes an OR(orange)-like protein that interacts directly with the PSY (phytoene synthase) protein and acts as a positive posttranscriptional regulator of its expression, thereby affecting carotenoid biosynthesis.	chaperone protein dnaJ-like protein;(source:Araport11)
AT5G06100.2	protein_coding	myb domain protein 33	Encodes a member of the myb family of transcription factors (MYB33), contains Pfam profile: PF00249 myb DNA-binding domain. Double mutants with MYB65 are male sterile- anthers are small, pollen development is defective. Spatial expression appears to be under the control of miR159, contains a target site for this micro RNA. A highly conserved RNA secondary structure abuts the miR159 binding site which facilitates its regulation by miR159. When the target site is mutated, expression is detected in leaves, roots, anther filament, pistil. The expression of a translational fusion is specific to anther locules in contrast to constructs lacking the miR159 target site. Phenotype is conditional and can be restored by lower temperature or higher light intensity.	myb domain protein 33;(source:Araport11)
AT5G48675.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT5G38905.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT5G38970.2	protein_coding	brassinosteroid-6-oxidase 1	Encodes a polypeptide involved in the C-6 oxidation of brassinosteroids. Heterologous expression of the protein in yeast conferred the ability to catalyze multiple reactions in which the C-6 position of 6-deoxocastasterone, 6-deoxotyphasterol, 3-dehydro-6-deoxoteasterone and 6-deoxoteasterone are oxidized.	brassinosteroid-6-oxidase 1;(source:Araport11)
AT5G44575.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G65930.2	protein_coding	kinesin-like calmodulin-binding protein (ZWICHEL)	encodes a novel member of the kinesin superfamily of motor proteins. recessive mutations have reduced number of trichome branches.	kinesin-like calmodulin-binding protein (ZWICHEL);(source:Araport11)
AT5G55045.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT5G55055.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT5G17530.2	protein_coding	phosphoglucosamine mutase family protein		phosphoglucosamine mutase family protein;(source:Araport11)
AT5G02815.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
AT5G02840.2	protein_coding	LHY/CCA1-like 1	Encodes RVE4, a homolog of the circadian rhythm regulator RVE8. rve4 rve6 rve8 triple mutants display an extremely long circadian period, with delayed and reduced expression of evening-phased clock genes. Involved in heat shock response.	LHY/CCA1-like 1;(source:Araport11)
AT5G15175.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: CAC);(source:Araport11, TAIR10)
AT5G15270.2	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT5G15190.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G08480.2	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT5G08450.2	protein_coding		Component of histone-deacetylase complexes. Interacts with HDA6 and HDA19 and facilitates histone deacetylation. Several salt-inducible genes are de-repressed in hdc1 mutants. Mutants are hypersensitive to ABA during germination, grow less and flower later than wildtype. HDC1-overexpressing plants display opposite phenotypes.	zinc finger CCCH domain protein;(source:Araport11)
AT5G03900.2	protein_coding	Iron-sulphur cluster biosynthesis family protein		Iron-sulfur cluster biosynthesis family protein;(source:Araport11)
AT5G19450.2	protein_coding	calcium-dependent protein kinase 19	calcium-dependent protein kinase (CDPK19) mRNA, complete	calcium-dependent protein kinase 19;(source:Araport11)
AT5G19330.2	protein_coding	ARM repeat protein interacting with  ABF2	Encodes an armadillo repeat protein involved in the abscisic acid response.  The protein interacts with a transcription factor, ABF2, which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements.	ARM repeat protein interacting with ABF2;(source:Araport11)
AT5G19390.2	protein_coding	Rho GTPase activation protein (RhoGAP) with PH domain	Encodes a protein with similarity to REN1, a Rho GTPase activating protein.It is cytoplasmic and plasma membrane associated in interphase, but during mitosis  localizes to the CDZ/CDS in a POK-dependent manner.	Rho GTPase activation protein (RhoGAP) with PH domain-containing protein;(source:Araport11)
AT5G01030.2	protein_coding	Protein of unknown function (DUF3527)		enolase, putative (DUF3527);(source:Araport11)
AT5G30410.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G30380.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, predicted proteins - Arabidopsis thaliana;(source:TAIR10)
AT5G30400.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.0e-29 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G30390.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 1.3e-10 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT5G01620.2	protein_coding	TRICHOME BIREFRINGENCE-LIKE 35	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).TBL35 are required only for xylan 3-O-monoacetylation and 2,3-di-O-acetylation. The biochemical phenotype can be observed in tbl35 esk1, double mutant and tbl34 tbl35 esk1 triple mutants.	TRICHOME BIREFRINGENCE-LIKE 35;(source:Araport11)
AT5G01670.2	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT5G52815.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT5G52660.2	protein_coding	Homeodomain-like superfamily protein	Encodes RVE6, a homolog of the circadian rhythm regulator RVE8. rve4 rve6 rve8 triple mutants display an extremely long circadian period, with delayed and reduced expression of evening-phased clock genes.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G20180.2	protein_coding	Ribosomal protein L36		Ribosomal protein L36;(source:Araport11)
AT5G20250.2	protein_coding	Raffinose synthase family protein	encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. The mRNA is cell-to-cell mobile.	Raffinose synthase family protein;(source:Araport11)
AT5G20160.2	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT5G16820.2	protein_coding	heat shock factor 3	Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP.  Required early in the stress response for transient expression of heat shock genes.	heat shock factor 3;(source:Araport11)
AT5G32197.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);athila retroelement ORF1 protein, contains Pfam PF03078: ATHILA ORF-1 family;(source:TAIR10)
AT5G32035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32179.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.8e-301 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32107.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32143.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32089.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32125.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32071.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.8e-293 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32161.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05636.1);(source:TAIR10)
AT5G32053.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G26780.3	protein_coding	serine hydroxymethyltransferase 2	Encodes a protein with serine hydroxymethyltransferase activity which is thought to be localized in the mitochondrial matrix. SHM2 expression fails to rescue the conditional lethal phenotype of the shm1-1 mutant, defective in SHM1.	serine hydroxymethyltransferase 2;(source:Araport11)
AT5G26780.2	protein_coding	serine hydroxymethyltransferase 2	Encodes a protein with serine hydroxymethyltransferase activity which is thought to be localized in the mitochondrial matrix. SHM2 expression fails to rescue the conditional lethal phenotype of the shm1-1 mutant, defective in SHM1.	serine hydroxymethyltransferase 2;(source:Araport11)
AT5G26940.3	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Encodes a Mg2+-dependent DNA exonuclease that degrades organelle DNA during Arabidopsis pollen development.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G26940.2	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Encodes a Mg2+-dependent DNA exonuclease that degrades organelle DNA during Arabidopsis pollen development.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G59385.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
AT5G59395.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
AT5G59510.1	protein_coding	ROTUNDIFOLIA like 5		ROTUNDIFOLIA like 5;(source:Araport11)
AT5G59560.2	protein_coding	sensitivity to red light reduced protein (SRR1)	Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling.	sensitivity to red light reduced protein (SRR1);(source:Araport11)
AT5G59440.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of  263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G59430.2	protein_coding	telomeric repeat binding protein 1	Encodes a telomeric repeat binding protein with a DNA binding domain at its C terminus. The DNA binding domain has a preference for GGTTTAG sequences and at least five of these repeats are required for recognition by a nearly full-length TRP1 protein.	telomeric repeat binding protein 1;(source:Araport11)
AT5G59480.2	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G16880.3	protein_coding	Target of Myb protein 1		Target of Myb protein 1;(source:Araport11)
AT5G16880.2	protein_coding	Target of Myb protein 1		Target of Myb protein 1;(source:Araport11)
AT5G17010.3	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G17010.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G11325.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
AT5G11225.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
AT5G11170.2	protein_coding	DEAD/DEAH box RNA helicase family protein 	One of two genes encoding an ATP-dependent RNA helicase that localizes predominantly to euchromatic regions of Arabidopsis nuclei, and associates with genes transcribed by RNA polymerase II independently from the presence of introns.  It is not detected at non-transcribed loci. It interacts with ssRNA, dsRNA and dsDNA, but not with ssDNA. Its ATPase activity is stimulated by RNA and dsDNA and its ATP-dependent RNA helicase activity unwinds dsRNA but not dsDNA.	DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT5G11320.2	protein_coding	Flavin-binding monooxygenase family protein	Belongs to the YUC gene family.  Encodes a predicted flavin monooxygenase. YUC4 is part of a pathway linking auxin biosynthesis and gynoecium development.	Flavin-binding monooxygenase family protein;(source:Araport11)
AT5G31736.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.7e-306 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G31753.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32312.1);(source:TAIR10)
AT5G31719.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF1 protein, contains Pfam PF03078: ATHILA ORF-1 family;(source:TAIR10)
AT5G31702.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G31668.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.8e-40 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT5G31787.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32312.1);(source:TAIR10)
AT5G31685.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31540.1);(source:TAIR10)
AT5G31804.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G31770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.7e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G19950.2	protein_coding	Domain of unknown function (DUF1767)		tudor domain protein (DUF1767);(source:Araport11)
AT5G28225.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, blastp match of 54%25 identity and 2.1e-37 P-value to GP|21104536|dbj|BAB93131.1||AP003196 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT5G29602.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07090.1);(source:TAIR10)
AT5G29613.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G29624.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G29580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.4e-130 P-value blast match to GB:AAA66266 unknown protein ORF1 transposable element En-1 (CACTA-element) (Zea mays);(source:TAIR10)
AT5G20856.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT5G20858.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT5G29591.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-14 P-value blast match to Q9XE24 /118-277 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G20854.1	pre_trna	ATC2; pre-tRNA	a nuclear-encoded, cytoplasmic tRNA gene for cysteine	pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT5G20852.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT5G20950.2	protein_coding	Glycosyl hydrolase family protein	Encodes a beta-glucosidase involved in xyloglucan metabolism.	Glycosyl hydrolase family protein;(source:Araport11)
AT5G20960.2	protein_coding	aldehyde oxidase 1	Encodes aldehyde oxidase AA01.	aldehyde oxidase 1;(source:Araport11)
AT5G26690.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G26700.1	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G26680.1	protein_coding	5'-3' exonuclease family protein	Encodes a FEN1 homolog that has double-flap endonuclease activity, weak GEN activity towards bubble DNA structures and flap endonuclease activity towards substrates with a single-flap structure, but lacks the 5&#8242; exonuclease activity towards DNA substrates with a nick on one strand, and GEN activity towards gapped DNA without any flap. It is expressed in rapidly dividing cells and mutants have smaller roots and hypocotyls.	5-3 exonuclease family protein;(source:Araport11)
AT5G26600.1	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT5G26590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.3e-11 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT5G26670.1	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT5G26580.1	protein_coding	AGAMOUS-like-34	Type I member of MADs box domain transcription factor family. This class lacks the K-domain required for dimerization that is characteristic of class II MADS box proteins.	AGAMOUS-like-34;(source:Araport11)
AT5G26610.2	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT5G26610.1	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT5G26710.1	protein_coding	Glutamyl/glutaminyl-tRNA synthetase, class Ic		Glutamyl/glutaminyl-tRNA synthetase, class Ic;(source:Araport11)
AT5G26730.1	protein_coding	Fasciclin-like arabinogalactan family protein		Fasciclin-like arabinogalactan family protein;(source:Araport11)
AT5G26650.1	protein_coding	AGAMOUS-like 36		AGAMOUS-like 36;(source:Araport11)
AT5G26640.1	protein_coding			anaphase-promoting complex subunit 11 RING-H2 finger protein;(source:Araport11)
AT5G26630.1	protein_coding	MADS-box transcription factor family protein		MADS-box transcription factor family protein;(source:Araport11)
AT5G26660.1	protein_coding	myb domain protein 86		myb domain protein 86;(source:Araport11)
AT5G26720.1	protein_coding			ubiquitin carboxyl-terminal hydrolase-like protein;(source:Araport11)
AT5G26620.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G26740.1	protein_coding	Protein of unknown function (DUF300)		organic solute transporter ostalpha protein (DUF300);(source:Araport11)
AT5G04140.2	protein_coding	glutamate synthase 1	Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation. The mRNA is cell-to-cell mobile.	glutamate synthase 1;(source:Araport11)
AT5G04130.2	protein_coding	DNA GYRASE B2	Encodes a protein that when expressed together with GYRA generates an active supercoiling DNA gyrase enzyme that shares similar properties to its bacterial counterpart, including sensitivity to gyrase-specific antibiotics.	DNA GYRASE B2;(source:Araport11)
AT5G27345.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.0e-48 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G27450.2	protein_coding	mevalonate kinase	Encodes a protein with mevalonate kinase activity involved in the mevalonate pathway.	mevalonate kinase;(source:Araport11)
AT5G18400.2	protein_coding	Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis		Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesi;(source:Araport11)
AT5G18310.2	protein_coding			ubiquitin hydrolase;(source:Araport11)
AT5G18420.2	protein_coding			CCR4-NOT transcription complex subunit;(source:Araport11)
AT5G30510.1	protein_coding	ribosomal protein S1		ribosomal protein S1;(source:Araport11)
AT5G30490.1	protein_coding			craniofacial development-like protein;(source:Araport11)
AT5G30545.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-34 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G30480.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-37 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G30470.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 4.1e-26 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT5G30520.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G30500.1	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein		Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT5G14495.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT5G14260.2	protein_coding	Rubisco methyltransferase family protein		Rubisco methyltransferase family protein;(source:Araport11)
AT5G14420.2	protein_coding	RING domain ligase2	Encodes RGLG2 (RING domain ligase 2), a RING domain ubiquitin E3 ligase that negatively regulates the drought stress response by mediating ERF53 transcriptional activity.	RING domain ligase2;(source:Araport11)
AT5G25390.2	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G30460.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G30450.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.3e-19 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G30440.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.6e-22 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G30420.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT5G18830.2	protein_coding	squamosa promoter binding protein-like 7	Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter  of the copper responsive miRNAs miR398b and miR389c.	squamosa promoter binding protein-like 7;(source:Araport11)
AT5G18800.2	protein_coding	Cox19-like CHCH family protein		Cox19-like CHCH family protein;(source:Araport11)
AT5G09655.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT5G09585.1	small_nuclear_rna	U2.5; snRNA		U2;(source:Araport11)
AT5G09755.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT5G09690.2	protein_coding	magnesium transporter 7	Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT5G09670.2	protein_coding	loricrin-related		loricrin-like protein;(source:Araport11)
AT5G03745.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAA);(source:Araport11, TAIR10)
AT5G03705.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: AAG);(source:Araport11, TAIR10)
AT5G03690.2	protein_coding	Aldolase superfamily protein		Aldolase superfamily protein;(source:Araport11)
AT5G03730.2	protein_coding	Protein kinase superfamily protein	Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed.	Protein kinase superfamily protein;(source:Araport11)
AT5G11475.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT5G06530.2	protein_coding	ABC-2 type transporter family protein	Encodes ABCG22, an ABC transporter gene. Mutation results in increased water transpiration and drought susceptibility.	ABC-2 type transporter family protein;(source:Araport11)
AT5G06600.2	protein_coding	ubiquitin-specific protease 12	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 12;(source:Araport11)
AT5G06570.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G60285.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: AAG);(source:Araport11, TAIR10)
AT5G60300.2	protein_coding	Concanavalin A-like lectin protein kinase family protein	Encodes a legume-type lectin receptor kinase that is structurally distinct from the mammalian extracellular ATP receptors and acts as an extracellular ATP receptor in Arabidopsis. Extracellular ATP acts as a damage-associated molecular pattern in plants, and its signaling through P2K1 is important for mounting an effective defense response against various pathogenic microorganisms. It also plays a role in cell wall-plasma membrane adhesion.	Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G28020.2	protein_coding	cysteine synthase D2	Encodes cysteine synthase CysD2.	cysteine synthase D2;(source:Araport11)
AT5G27505.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.5e-26 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G03240.2	protein_coding	polyubiquitin 3	encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.	polyubiquitin 3;(source:Araport11)
AT5G27930.2	protein_coding	Protein phosphatase 2C family protein	EGR2 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress. EGR2 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT5G15815.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT5G15805.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT5G15802.1	protein_coding			chaperone;(source:Araport11)
AT5G12080.2	protein_coding	mechanosensitive channel of small conductance-like 10	Encodes a mechanosensitive (or stretch-activated) ion channel in the plasma membrane with a moderate preference for anions.Cell death activity is negatively regulated by phosphorylation while mechanosensitive properties are unaffected.	mechanosensitive channel of small conductance-like 10;(source:Araport11)
AT5G11860.2	protein_coding	SCP1-like small phosphatase 5	Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).	SCP1-like small phosphatase 5;(source:Araport11)
AT5G21378.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT5G21222.1	protein_coding	protein kinase family protein		protein kinase family protein;(source:Araport11)
AT5G21274.1	protein_coding	calmodulin 6	Encodes a calmodulin isoform. Expressed in leaves.	calmodulin 6;(source:Araport11)
AT5G21430.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G21326.1	protein_coding	Ca2+regulated serine-threonine protein kinase family protein		Ca2+regulated serine-threonine protein kinase family protein;(source:Araport11)
AT5G21482.1	protein_coding	cytokinin oxidase 7	This gene used to be called AtCKX5. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase 7;(source:Araport11)
AT5G03452.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT5G03445.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT5G03545.1	protein_coding		Expressed in response to phosphate starvation, this response is enhanced by the presence of IAA. Additionally, its expression is responsive to both phosphate (Pi) and phosphite (Phi) in shoots. The mRNA is cell-to-cell mobile.	expressed in response to phosphate starvation protein;(source:Araport11)
AT5G03415.1	protein_coding	Transcription factor DP	Encodes a homolog of the animal DP protein.  DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost.	Transcription factor DP;(source:Araport11)
AT5G10525.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: CCT);(source:Araport11, TAIR10)
AT5G10455.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT5G10350.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a nuclear-localized RNA recognition motif-containing protein that forms homodimers.  It interacts with telomere and non-telomere associated proteins. Null mutation does not result in changes in telomerase activity or telomere length.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G46595.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT4G13445.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT4G13265.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: AAG);(source:Araport11, TAIR10)
AT4G13350.2	protein_coding	NSP (nuclear shuttle protein)-interacting GTPase	Encodes a GTPase that interacts with nuclear shuttle proteins (NSPs) from a number of different plant viruses. The gene is widely expressed and NIG transcript levels do not rise in response to viral infection. This cytoplasmic protein does not directly interact with a viral movement protein (MP), but, it does promote the movement of NSP from the nucleus to the cytoplasm. Overexpression of NIG in Arabidopsis plants renders them more sensitive to geminivirus infection.	NSP (nuclear shuttle protein)-interacting GTPase;(source:Araport11)
AT4G13345.2	protein_coding	Serinc-domain containing serine and sphingolipid biosynthesis protein		Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT4G18255.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAG);(source:Araport11, TAIR10)
AT4G38900.2	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT4G38810.2	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT4G21850.2	protein_coding	methionine sulfoxide reductase B9		methionine sulfoxide reductase B9;(source:Araport11)
AT4G06658.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.4e-182 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT4G06656.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.5e-294 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06664.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G01865.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT4G06660.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.8e-275 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G01860.2	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G01897.1	protein_coding			dihydroorotate dehydrogenase;(source:Araport11)
AT4G17975.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT4G18010.2	protein_coding	myo-inositol polyphosphate 5-phosphatase 2	Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not appear to be active against phosphatidylinositol 4,5 bisphosphate. Overexpression of this gene renders plants insensitive to ABA in germination and growth assays.	myo-inositol polyphosphate 5-phosphatase 2;(source:Araport11)
AT4G18020.3	protein_coding	CheY-like two-component responsive regulator family protein	Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).	CheY-like two-component responsive regulator family protein;(source:Araport11)
AT4G18020.2	protein_coding	CheY-like two-component responsive regulator family protein	Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).	CheY-like two-component responsive regulator family protein;(source:Araport11)
AT4G13615.1	protein_coding	Uncharacterised protein family SERF		Uncharacterized protein family SERF;(source:Araport11)
AT4G13530.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G09970.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G09960.2	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a MADS box transcription factor expressed in the carpel and ovules. Plays a maternal role in fertilization and seed development. Controls the structure and mechanical properties of the seed coat.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT4G10000.2	protein_coding	Thioredoxin family protein		Thioredoxin family protein;(source:Araport11)
AT4G02920.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G02890.3	protein_coding	Ubiquitin family protein	Polyubiquitin gene containing 4 ubiquitin repeats.	Ubiquitin family protein;(source:Araport11)
AT4G02890.2	protein_coding	Ubiquitin family protein	Polyubiquitin gene containing 4 ubiquitin repeats.	Ubiquitin family protein;(source:Araport11)
AT4G39865.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: ACG);(source:Araport11, TAIR10)
AT4G39985.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT4G39860.2	protein_coding			hematological/neurological-like protein;(source:Araport11)
AT4G06626.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-157 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G11745.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G34695.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT4G34460.2	protein_coding	GTP binding protein beta 1	Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER.  Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase.  It seems to be involved in the calcium-mediated response to extracellular ATP.	GTP binding protein beta 1;(source:Araport11)
AT4G03110.2	protein_coding	RNA-binding protein-defense related 1	Encodes a putative RNA-binding protein that is located in the cytoplasm and is involved in the hypersensitive response and positively regulates salicylic acid-mediated immunity.	RNA-binding protein-defense related 1;(source:Araport11)
AT4G10590.2	protein_coding	ubiquitin-specific protease 10	encodes a member of the ubiquitin-specific protease family, UBP10	ubiquitin-specific protease 10;(source:Araport11)
AT4G12405.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT4G08980.2	protein_coding	F-BOX WITH WD-40 2	Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response. It is a F-box subunit of the SCF E3 ubiquitin ligase complex that mediates the degradation of 14-3-3 proteins.	F-BOX WITH WD-40 2;(source:Araport11)
AT4G08850.2	protein_coding	Leucine-rich repeat receptor-like protein kinase family protein	MIK1 encodes a receptor kinase that forms a complex with MDIS1/MIK2 and binds LURE1, the female pollen guidance chemi-attractant. MIK1 phosphorylates MDIS1 and is autophosphorylated.	Leucine-rich repeat receptor-like protein kinase family protein;(source:Araport11)
AT4G23915.1	pre_trna	pre-tRNA	Encodes an alanine tRNA with the anticodon CGC that recognizes the alanine codon GCG.	pre-tRNA tRNA-Ala (anticodon: CGC);(source:Araport11, TAIR10)
AT4G25435.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT4G25434.1	protein_coding	nudix hydrolase homolog 10		nudix hydrolase homolog 10;(source:Araport11)
AT4G25390.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G06597.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT4G06587.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.4e-06 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06595.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.3e-49 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G06594.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.1e-215 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G06585.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.8e-06 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06591.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.1e-121 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G06589.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.7e-95 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT4G06588.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.0e-130 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G06590.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06592.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06598.1	protein_coding			basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT4G06596.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.7e-05 P-value blast match to GB:AAA98435 POL3 gene product (gypsy_Ty3-element) (Saccharomyces cerevisiae);(source:TAIR10)
AT4G06593.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-187 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06692.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.8e-160 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G06676.1	protein_coding			etoposide-induced protein;(source:Araport11)
AT4G06674.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.1e-71 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G06688.1	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT4G06700.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT4G06686.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.7e-122 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT4G06672.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32070.1);(source:TAIR10)
AT4G06698.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.4e-40 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G06684.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.2e-22 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT4G06682.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-196 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT4G06670.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.4e-141 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G06694.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-68 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06696.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.7e-64 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G06680.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF1 protein;(source:TAIR10)
AT4G06668.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.7e-21 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G06678.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06666.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G02260.2	protein_coding	RELA/SPOT homolog 1	Displays guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity  but not  guanosine-3',5'-bis(diphosphate) 3'-diphosphate synthase activity.	RELA/SPOT homolog 1;(source:Araport11)
AT4G06560.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06559.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.7e-117 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT4G06562.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.9e-144 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06558.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 1.4e-83 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT4G06557.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 6.5e-16 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT4G06563.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-227 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06561.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-80 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G27630.2	protein_coding	GPCR-type G protein 2	Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG2 binds to GPA1, the alpha subunit of the heterotrimeric G protein.  GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG2 and may act to down-regulate GTG2 binding to ABA. GTG2 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG2 transcript levels do not appear to change in response to ABA or abiotic stresses.	GPCR-type G protein 2;(source:Araport11)
AT4G27610.2	protein_coding			intracellular protein transporter;(source:Araport11)
AT4G08345.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAG);(source:Araport11, TAIR10)
AT4G27875.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: CTG);(source:Araport11, TAIR10)
AT4G27885.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: CGC);(source:Araport11, TAIR10)
AT4G27800.2	protein_coding	thylakoid-associated phosphatase 38	Choroplast protein phosphatase TAP38/PPH1 is  required for efficient dephosphorylation of the LHCII anthena and state transition from state 2 to state 1.	thylakoid-associated phosphatase 38;(source:Araport11)
AT4G27800.3	protein_coding	thylakoid-associated phosphatase 38	Choroplast protein phosphatase TAP38/PPH1 is  required for efficient dephosphorylation of the LHCII anthena and state transition from state 2 to state 1.	thylakoid-associated phosphatase 38;(source:Araport11)
AT4G11890.2	protein_coding	Protein kinase superfamily protein	Encodes a receptor-like cytosolic kinase ARCK1. Negatively controls abscisic acid and osmotic stress signal transduction.	Protein kinase superfamily protein;(source:Araport11)
AT4G11820.2	protein_coding	hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase	Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant.	hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase;(source:Araport11)
AT4G26385.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT4G26375.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT4G26225.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT4G06584.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.9e-239 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G06568.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-22 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G06575.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06583.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G06574.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.3e-274 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06572.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-68 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G06567.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.2e-85 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G06581.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.7e-64 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06573.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF1 protein;(source:TAIR10)
AT4G06582.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT4G06580.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06566.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.9e-101 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G06576.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.5e-174 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06579.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, temporary gene name assignment;(source:TAIR10)
AT4G06571.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06578.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.2e-127 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT4G06577.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.7e-38 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06570.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.3e-26 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G06565.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06569.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.2e-59 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT4G06564.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.5e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G39366.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT4G39363.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT4G39364.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT4G39345.1	pre_trna	pre-tRNA		pre-tRNA tRNA-His (anticodon: GTG);(source:Araport11, TAIR10)
AT4G39361.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT4G39195.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT4G39300.2	protein_coding			envelope glycoprotein;(source:Araport11)
AT4G39140.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G39260.2	protein_coding	cold, circadian rhythm, and RNA binding 1	Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7.  A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	cold, circadian rhythm, and RNA binding 1;(source:Araport11)
AT4G39260.4	protein_coding	cold, circadian rhythm, and RNA binding 1	Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7.  A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	cold, circadian rhythm, and RNA binding 1;(source:Araport11)
AT4G39260.3	protein_coding	cold, circadian rhythm, and RNA binding 1	Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7.  A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	cold, circadian rhythm, and RNA binding 1;(source:Araport11)
AT4G11177.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT4G11070.2	protein_coding	WRKY family transcription factor	member of WRKY Transcription Factor; Group III	WRKY family transcription factor;(source:Araport11)
AT4G24440.2	protein_coding	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)		transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S);(source:Araport11)
AT4G24270.2	protein_coding	EMBRYO DEFECTIVE 140	A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	EMBRYO DEFECTIVE 140;(source:Araport11)
AT4G24290.2	protein_coding	MAC/Perforin domain-containing protein		MAC/Perforin domain-containing protein;(source:Araport11)
AT4G24470.2	protein_coding	GATA-type zinc finger protein with TIFY domain	ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif.	GATA-type zinc finger protein with TIFY domain-containing protein;(source:Araport11)
AT4G24230.2	protein_coding	acyl-CoA-binding domain 3	acyl-CoA-binding protein ACBP3. Localized  extracellularly in transiently expressed tobacco BY-2  cells and onion epidermal cells. Binds arachidonyl-CoA with high  affinity. Microarray data shows up-regulation of many biotic- and abiotic-stress-related genes in an ACBP3 OE-1 in comparison to wild type.	acyl-CoA-binding domain 3;(source:Araport11)
AT4G12720.3	protein_coding	MutT/nudix family protein	Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.	MutT/nudix family protein;(source:Araport11)
AT4G12720.2	protein_coding	MutT/nudix family protein	Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.	MutT/nudix family protein;(source:Araport11)
AT4G12790.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G12545.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G12440.2	protein_coding	adenine phosphoribosyl transferase 4		adenine phosphoribosyl transferase 4;(source:Araport11)
AT4G05497.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G36060.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G24025.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: CCC);(source:Araport11, TAIR10)
AT4G04340.3	protein_coding	ERD (early-responsive to dehydration stress) family protein	Encodes a plasma membrane localized hyperosmolality gated calcium channel that is expressed in guard cells and roots.	ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G04340.2	protein_coding	ERD (early-responsive to dehydration stress) family protein	Encodes a plasma membrane localized hyperosmolality gated calcium channel that is expressed in guard cells and roots.	ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G19110.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G19120.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G00985.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: CTG);(source:Araport11, TAIR10)
AT4G00755.2	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G00810.2	protein_coding	60S acidic ribosomal protein family	Co-orthologous gene of large ribosomal subunit protein RPP1.	60S acidic ribosomal protein family;(source:Araport11)
AT4G29740.2	protein_coding	cytokinin oxidase 4	It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase 4;(source:Araport11)
AT4G33625.1	protein_coding			vacuole protein;(source:Araport11)
AT4G33630.2	protein_coding	Protein of unknown function (DUF3506)	Encodes one of the two plastid proteins EXECUTER (EX1, AT4G33630) and EX2 (AT1G27510). Mediates singlet oxygen induced programmed cell death.	UvrB/UvrC domain protein (DUF3506);(source:Araport11)
AT4G33740.2	protein_coding			myb-like protein X;(source:Araport11)
AT4G32850.3	protein_coding	nuclear poly(a) polymerase	Encodes a nuclear poly(A) polymerase. Located in the nucleus. The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT4G32850.2	protein_coding	nuclear poly(a) polymerase	Encodes a nuclear poly(A) polymerase. Located in the nucleus. The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT4G19865.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G19870.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G26675.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT4G26570.2	protein_coding	calcineurin B-like 3	member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins)	calcineurin B-like 3;(source:Araport11)
AT4G26640.2	protein_coding	WRKY family transcription factor family protein	member of WRKY Transcription Factor; Group I	WRKY family transcription factor family protein;(source:Araport11)
AT4G08555.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G01690.2	protein_coding	Flavin containing amine oxidoreductase family	Encodes protoporphyrinogen oxidase (PPOX).	Flavin containing amine oxidoreductase family;(source:Araport11)
AT4G01650.2	protein_coding	Polyketide cyclase / dehydrase and lipid transport protein		Polyketide cyclase / dehydrase and lipid transport protein;(source:Araport11)
AT4G01610.2	protein_coding	Cysteine proteinases superfamily protein	Encodes a capase involved in stress induced cell death.  Activity detected in leaf and cell culture.	Cysteine proteinases superfamily protein;(source:Araport11)
AT4G02425.1	protein_coding			LYR motif protein;(source:Araport11)
AT4G27900.2	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT4G27960.2	protein_coding	ubiquitin conjugating enzyme 9	ubiquitin conjugating enzyme	ubiquitin conjugating enzyme 9;(source:Araport11)
AT4G22754.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT4G22785.1	pre_trna	pre-tRNA		tRNA-Lys (anticodon: CTT)
AT4G22740.2	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G08180.2	protein_coding	OSBP(oxysterol binding protein)-related protein 1C		OSBP(oxysterol binding protein)-related protein 1C;(source:Araport11)
AT4G08170.2	protein_coding	Inositol 1,3,4-trisphosphate 5/6-kinase family protein		Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11)
AT4G08240.2	protein_coding			histone-lysine N-methyltransferase;(source:Araport11)
AT4G06611.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT4G06622.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, expressed protein;(source:TAIR10)
AT4G06612.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06610.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.9e-35 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06613.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.5e-52 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G06618.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 42%25 identity and 1.2e-18 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus};(source:TAIR10)
AT4G06624.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Athila retroelement ORF1 protein;(source:TAIR10)
AT4G06616.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.9e-231 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06614.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Putative transposase, blastp match of 29%25 identity and 4.4e-17 P-value to GP|20042909|gb|AAM08737.1|AC025098_4|AC025098 Putative transposase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT4G06603.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34590.1);(source:TAIR10)
AT4G06602.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.0e-80 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G06604.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.4e-248 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G06600.1	pseudogene			pseudogene of nucleic acid binding / zinc ion binding protein;(source:Araport11)
AT4G06608.1	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT4G06609.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.8e-179 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G06607.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06601.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06620.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.5e-83 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT4G06606.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G02555.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT4G06599.1	protein_coding	ubiquitin family protein		ubiquitin family protein;(source:Araport11)
AT4G02550.2	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT4G02055.1	pre_trna	pre-tRNA		pre-tRNA tRNA-His (anticodon: GTG);(source:Araport11, TAIR10)
AT4G02200.2	protein_coding	Drought-responsive family protein		Drought-responsive family protein;(source:Araport11)
AT4G02130.2	protein_coding	galacturonosyltransferase 6	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 6;(source:Araport11)
AT4G22265.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT4G22230.2	protein_coding	Arabidopsis defensin-like protein	Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT4G22160.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G30820.2	protein_coding	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related		cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30760.2	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT4G25585.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
AT4G27395.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT4G35110.2	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G26510.2	protein_coding	uridine kinase-like 4	One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 4;(source:Araport11)
AT4G26400.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G25635.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAA);(source:Araport11, TAIR10)
AT4G25650.2	protein_coding	ACD1-like	Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.	ACD1-like protein;(source:Araport11)
AT4G16475.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAG);(source:Araport11, TAIR10)
AT4G14345.1	pre_trna	pre-tRNA		pre-tRNA tRNA-His (anticodon: GTG);(source:Araport11, TAIR10)
AT4G16235.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: TAC);(source:Araport11, TAIR10)
AT4G17612.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT4G16465.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: AGT);(source:Araport11, TAIR10)
AT4G17765.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT4G16105.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: AGT);(source:Araport11, TAIR10)
AT4G15775.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT4G14415.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: AGT);(source:Araport11, TAIR10)
AT4G16520.2	protein_coding	Ubiquitin-like superfamily protein	Autophagy protein.	Ubiquitin-like superfamily protein;(source:Araport11)
AT4G16990.2	protein_coding	disease resistance protein (TIR-NBS class), putative		disease resistance protein (TIR-NBS class);(source:Araport11)
AT4G16990.3	protein_coding	disease resistance protein (TIR-NBS class), putative		disease resistance protein (TIR-NBS class);(source:Araport11)
AT4G15530.2	protein_coding	pyruvate orthophosphate dikinase	Encodes a dual-targeted protein believed to act as a pyruvate, orthophosphate dikinase. These enzymes are normally associated with C4 photosynthesis which does not occur in Arabidopsis. However, PPDK may play a role in remobilizing nitrogen during leaf senescence in Arabidopsis. The product of the long transcript (.1 gene model) was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. The two proteins were also found to be expressed in slightly different tissues.	pyruvate orthophosphate dikinase;(source:Araport11)
AT4G16950.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family	Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.Redundant function together with SIKIC1 and 3 in SNC1-mediated autoimmunity. Protein levels controlled by MUSE1 and MUSE2.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16765.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G14520.2	protein_coding	DNA-directed RNA polymerase II-related		DNA-directed RNA polymerase II-like protein;(source:Araport11)
AT4G16770.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G16160.2	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco.	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT4G14410.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Basic helix loop helix transcription factor involved in stress mediated signaling during germination.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G14960.2	protein_coding	Tubulin/FtsZ family protein	Encodes an alpha-tubulin isoform required for right handed helical growth.	Tubulin/FtsZ family protein;(source:Araport11)
AT4G14400.3	protein_coding	ankyrin repeat family protein	encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.	ankyrin repeat family protein;(source:Araport11)
AT4G14400.2	protein_coding	ankyrin repeat family protein	encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.	ankyrin repeat family protein;(source:Araport11)
AT4G14350.2	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein		AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT4G14310.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G17740.2	protein_coding	Peptidase S41 family protein		Peptidase S41 family protein;(source:Araport11)
AT4G16980.1	protein_coding	arabinogalactan-protein family		arabinogalactan-protein family;(source:Araport11)
AT4G15802.1	protein_coding	heat shock factor binding protein	Encodes a protein with similarity to heat shock factor binding proteins. Involved in negative regulation of heat shock response. Becomes nuclear localized upon heat treatment.	heat shock factor binding protein;(source:Araport11)
AT4G16695.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G15955.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G15415.2	protein_coding	Protein phosphatase 2A regulatory B subunit family protein	B' regulatory subunit of PP2A (AtB'gamma)	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT4G14905.1	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G14455.1	protein_coding	Target SNARE coiled-coil domain protein	Encodes a Bet1/Sft1-like SNARE protein, which  can only partially suppresses the temperature-sensitive  growth defect in <i>sft1-1</i> yeast cells; however, it cannot support the deletion of the yeast BET1 gene (<i>bet1&#916;</i>).  In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi.	Target SNARE coiled-coil domain protein;(source:Araport11)
AT4G14342.1	protein_coding	Splicing factor 3B subunit 5/RDS3 complex subunit 10		Splicing factor 3B subunit 5/RDS3 complex subunit 10;(source:Araport11)
AT4G14160.2	protein_coding	Sec23/Sec24 protein transport family protein		Sec23/Sec24 protein transport family protein;(source:Araport11)
AT4G15210.2	protein_coding	beta-amylase 5	cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.	beta-amylase 5;(source:Araport11)
AT4G14880.2	protein_coding	O-acetylserine (thiol) lyase (OAS-TL) isoform A1	Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma.  Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA. Lines carrying semi-dominant mutations exhibit early senescence. Required for pollen tube growth and/or fertilization.	O-acetylserine (thiol) lyase (OAS-TL) isoform A1;(source:Araport11)
AT4G16710.2	protein_coding	glycosyltransferase family protein 28		glycosyltransferase family protein 28;(source:Araport11)
AT4G30210.2	protein_coding	P450 reductase 2	Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway. The mRNA is cell-to-cell mobile.	P450 reductase 2;(source:Araport11)
AT4G30200.2	protein_coding	vernalization5/VIN3-like	Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.	vernalization5/VIN3-like protein;(source:Araport11)
AT4G03435.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT4G20380.3	protein_coding	LSD1 zinc finger family protein	LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge	LSD1 zinc finger family protein;(source:Araport11)
AT4G20440.2	protein_coding	small nuclear ribonucleoprotein associated protein B		small nuclear ribonucleoprotein associated protein B;(source:Araport11)
AT4G06499.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.1e-26 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06485.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.0e-252 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06505.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06494.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains Pfam domain PF03778: Protein of unknown function (DUF321);(source:TAIR10)
AT4G06498.1	pseudogene			pseudogene of vacuolar sorting receptor 4;(source:Araport11)
AT4G06491.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.4e-214 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G06483.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-19 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06497.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.0e-48 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G06490.1	protein_coding	Protein of unknown function (DUF3287)		hypothetical protein (DUF3287);(source:Araport11)
AT4G06482.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.7e-180 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06489.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT4G06481.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains Pfam domain PF03078: ATHILA ORF-1 family;(source:TAIR10)
AT4G06484.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06492.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06486.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06501.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06496.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06504.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.5e-102 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G06502.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains Pfam domain PF02721: Domain of unknown function DUF223;(source:TAIR10)
AT4G06488.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.5e-167 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G06503.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.2e-53 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G06487.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-23 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06495.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06500.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease family, contains Pfam PF02902: Ulp1 protease family, C-terminal catalytic domain;(source:TAIR10)
AT4G23635.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAA);(source:Araport11, TAIR10)
AT4G06493.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase, similar to  putative non-LTR retroelement reverse transcript GP:4432866 (Arabidopsis thaliana);(source:TAIR10)
AT4G23600.2	protein_coding	Tyrosine transaminase family protein	Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis.  mRNA levels are elevated in response to wounding.	Tyrosine transaminase family protein;(source:Araport11)
AT4G23570.2	protein_coding	phosphatase-related	Closely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly  expressed than AtSGT1. The N-terminal TPR domain of  AtSGT1a reduces the steady-state level of Arabidopsis SGT1  proteins whereas the same domain from AtSGT1b enhances  SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.	phosphatase-like protein;(source:Araport11)
AT4G23660.2	protein_coding	polyprenyltransferase 1	Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50).	polyprenyltransferase 1;(source:Araport11)
AT4G11355.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT4G11216.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAA);(source:Araport11, TAIR10)
AT4G11213.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAA);(source:Araport11, TAIR10)
AT4G06646.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OJ1081_B12.13, blastp match of 33%25 identity and 9.8e-51 P-value to GP|27817864|dbj|BAC55632.1||AP003865 OJ1081_B12.13 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT4G06652.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.5e-31 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G06650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 9.1e-125 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT4G06632.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 3.9e-05 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G06644.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-19 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT4G06636.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.9e-74 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G06640.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.4e-159 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT4G06628.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.2e-125 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G06630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.1e-46 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G06638.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, Ulp1 protease -related, temporary gene name assignment;(source:TAIR10)
AT4G06634.1	protein_coding	zinc finger (C2H2 type) family protein	Encodes an ABA responsive C2H2-type zinc finger transcription factor with both transcriptional repression and activation domains, that binds a G-rich, 11-bp DNA-binding motif. YY1 binds to the promoter of ABR1 and disruption represses ABA- and salt-induced ABR1 expression.	zinc finger (C2H2 type) family protein;(source:Araport11)
AT4G06642.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06648.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-181 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06654.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.2e-88 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G31410.2	protein_coding	Protein of unknown function (DUF1644)		E3 ubiquitin-protein ligase, putative (DUF1644);(source:Araport11)
AT4G31265.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: ACG);(source:Araport11, TAIR10)
AT4G31200.2	protein_coding	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein;(source:Araport11)
AT4G35740.2	protein_coding	DEAD/DEAH box RNA helicase family protein 	Encodes RECQ3, an ATP-dependent helicase.	DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT4G32475.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT4G32470.2	protein_coding	Cytochrome bd ubiquinol oxidase, 14kDa subunit		Cytochrome bd ubiquinol oxidase, 14kDa subunit;(source:Araport11)
AT4G22635.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT4G21090.2	protein_coding	MITOCHONDRIAL  FERREDOXIN 2		MITOCHONDRIAL FERREDOXIN 2;(source:Araport11)
AT4G21160.2	protein_coding	Calcium-dependent ARF-type GTPase activating protein family	ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	Calcium-dependent ARF-type GTPase activating protein family;(source:Araport11)
AT4G23050.2	protein_coding	PAS domain-containing protein tyrosine kinase family protein		PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT4G23130.2	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 5	Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	cysteine-rich RLK (RECEPTOR-like protein kinase) 5;(source:Araport11)
AT4G23140.2	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 6	Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	cysteine-rich RLK (RECEPTOR-like protein kinase) 6;(source:Araport11)
AT4G22890.3	protein_coding	PGR5-LIKE A	Encodes PGRL1A, a transmembrane protein present in thylakoids.  PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). The mRNA is cell-to-cell mobile.	PGR5-LIKE A;(source:Araport11)
AT4G22890.2	protein_coding	PGR5-LIKE A	Encodes PGRL1A, a transmembrane protein present in thylakoids.  PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). The mRNA is cell-to-cell mobile.	PGR5-LIKE A;(source:Araport11)
AT4G00540.2	protein_coding	myb domain protein 3r2	Encodes a putative c-myb-like transcription factor.  Member of a class of domain proteins containing structural features of the vertebrate c-Myb proto-oncoprotein, including the presence of three Myb motifs (R1,R2,R3).	myb domain protein 3r2;(source:Araport11)
AT4G00660.2	protein_coding	RNAhelicase-like 8		RNAhelicase-like 8;(source:Araport11)
AT4G00085.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT4G31075.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCT);(source:Araport11, TAIR10)
AT4G30993.2	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT4G31180.2	protein_coding	Class II aminoacyl-tRNA and biotin synthetases superfamily protein	The IBI1 gene encodes an aspartyl tRNA synthetase (AspRS). In addition, the IBI1 protein acts as a receptor protein of the chemical plant defence activator beta-aminobutyric acid (BABA). Binding of IBI1 to the active R-enantiomer of BABA primes non-canonical defence activity of the AspRS protein against pathogen attack.	Class II aminoacyl-tRNA and biotin synthetases superfamily protein;(source:Araport11)
AT4G31115.1	protein_coding	Protein of unknown function (DUF1997)		DUF1997 family protein, putative (DUF1997);(source:Araport11)
AT4G07825.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G00315.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein	Member of a family of F-Box proteins. May function redundantly with FOF2 to negatively regulate FLC and flowering.	F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT4G00420.2	protein_coding	Double-stranded RNA-binding domain (DsRBD)-containing protein		Double-stranded RNA-binding domain (DsRBD)-containing protein;(source:Araport11)
AT4G00355.3	protein_coding		Encodes an Atg8-interacting protein that is partially associated with the ER during favorable growth conditions and becomes mainly associated with a spherical compartment that dynamically moves along the ER network.	mesoderm induction early response protein;(source:Araport11)
AT4G00355.2	protein_coding		Encodes an Atg8-interacting protein that is partially associated with the ER during favorable growth conditions and becomes mainly associated with a spherical compartment that dynamically moves along the ER network.	mesoderm induction early response protein;(source:Araport11)
AT4G33150.2	protein_coding	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme	This is a splice variant of the LKR/SDH locus. It encodes a bifunctional polypeptide lysine-ketoglutarate reductase and saccharopine dehydrogenase involved in lysine degradation. There is another splice variant that encodes a mono saccharopine dehydrogenase protein. Gene expression is induced by abscisic acid, jasmonate, and under sucrose starvation.	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme;(source:Araport11)
AT4G04620.2	protein_coding	Ubiquitin-like superfamily protein	Autophagy protein.	Ubiquitin-like superfamily protein;(source:Araport11)
AT4G32765.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: CGA);(source:Araport11, TAIR10)
AT4G03295.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT4G03135.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT4G03405.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: CTG);(source:Araport11, TAIR10)
AT4G03285.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: TGT);(source:Araport11, TAIR10)
AT4G03280.2	protein_coding	photosynthetic electron transfer C	Encodes the Rieske FeS center of cytochrome b6f complex. Gene is expressed in shoot but not in root. Mutant has reduced electron transport at saturating light intensities and Q-cycle activity is hypersensitive to acidification of the thylakoid lumen. The mRNA is cell-to-cell mobile.	photosynthetic electron transfer C;(source:Araport11)
AT4G35790.3	protein_coding	phospholipase D delta	Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.	phospholipase D delta;(source:Araport11)
AT4G35790.2	protein_coding	phospholipase D delta	Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.	phospholipase D delta;(source:Araport11)
AT4G35920.3	protein_coding	PLAC8 family protein	Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium.	PLAC8 family protein;(source:Araport11)
AT4G35920.2	protein_coding	PLAC8 family protein	Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium.	PLAC8 family protein;(source:Araport11)
AT4G01355.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT4G01220.2	protein_coding	Nucleotide-diphospho-sugar transferase family protein	Encodes MGP4 (MALE GAMETOPHYTE DEFECTIVE 4), a rhamnogalacturonan II xylosyltransferase important for growth of pollen tubes and roots.	Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT4G31695.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met (anticodon: CAT);(source:Araport11, TAIR10)
AT4G31720.2	protein_coding	TBP-associated factor II 15	Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15)	TBP-associated factor II 15;(source:Araport11)
AT4G31780.2	protein_coding	monogalactosyl diacylglycerol synthase 1	Encodes an A-type monogalactosyldiacylglycerol (MGDG) synthase. It represents the isoform responsible for the bulk of MGDG synthesis in Arabidopsis.	monogalactosyl diacylglycerol synthase 1;(source:Araport11)
AT4G18375.2	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT4G07425.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 2.5e-22 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT4G34035.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCT);(source:Araport11, TAIR10)
AT4G34050.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Methyltransferase in the lignin biosynthetic pathway.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G34215.2	protein_coding	Domain of unknown function (DUF303) 	Encodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds.	carbohydrate esterase, putative (DUF303);(source:Araport11)
AT4G18725.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT4G18815.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
AT4G33000.2	protein_coding	calcineurin B-like protein 10	Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis. In the shoot SCABP recruits the protein kinase SOS2 to the plasma membrane. SCABP is partially redundant with SOS3 but neither protein can fully complement the loss of the other protein.	calcineurin B-like protein 10;(source:Araport11)
AT4G28150.2	protein_coding	Protein of unknown function (DUF789)		hypothetical protein (DUF789);(source:Araport11)
AT4G28915.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT4G28980.2	protein_coding	CDK-activating kinase 1AT	Encodes a CDK-activating kinase that regulates root initial cell differentiation.  Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription.	CDK-activating kinase 1AT;(source:Araport11)
AT4G28910.2	protein_coding	novel interactor of JAZ	Encodes a transcriptional repressor that functions in the jasmonic acid (JA) signalling pathway, root development, and has a key role in leaf development, likely due to the transcriptional regulation of CYCD3 expression.	Putative interactor of JAZ;(source:Araport11)
AT4G10815.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: CCC);(source:Araport11, TAIR10)
AT4G10925.2	protein_coding	Nuclear transport factor 2 (NTF2) family protein		Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT4G10890.1	protein_coding			DDE family endonuclease;(source:Araport11)
AT4G13020.2	protein_coding	Protein kinase superfamily protein	Encodes a member of the cdc2+ family of protein kinases MHK.  Similar to the mak genes of rats.  mak encodes a protein kinase that may play a role in spermatogenesis.	Protein kinase superfamily protein;(source:Araport11)
AT4G13030.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G13100.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G11405.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: TGT);(source:Araport11, TAIR10)
AT4G11570.2	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	Encodes plastid localized protein involved in riboflavin biosynthesis. It dephosphorylates  5-amino-6-ribitylamino- 2,4(1H,3H) pyrimidinedione 5&#8242;-phosphate (ARPP) .	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT4G19645.2	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT4G19510.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class)		Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT4G19490.2	protein_coding	VPS54	Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system.	VPS54;(source:Araport11)
AT4G10265.1	protein_coding	Wound-responsive family protein	Member of the wound-induced polypeptide (WIP) family.	Wound-responsive family protein;(source:Araport11)
AT4G25230.2	protein_coding	RPM1 interacting protein 2	RPM1 interacting protein 2, has a CUE domain which is sufficient for the interaction with RPM1.Positive regulator of RPM1 and PRS2 mediated hypersensitive response.Functions as ubiquitin ligase and binds to RPM1.	RPM1 interacting protein 2;(source:Araport11)
AT4G39615.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT4G39672.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: CAC);(source:Araport11, TAIR10)
AT4G39390.2	protein_coding	nucleotide sugar transporter-KT 1	Encodes a golgi localized  nucleotide sugar transporter.	nucleotide sugar transporter-KT 1;(source:Araport11)
AT4G36197.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT4G36245.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: CGG);(source:Araport11, TAIR10)
AT4G36210.2	protein_coding	Protein of unknown function (DUF726)		transmembrane/coiled-coil protein (DUF726);(source:Araport11)
AT4G36360.2	protein_coding	beta-galactosidase 3	putative beta-galactosidase (BGAL3 gene)	beta-galactosidase 3;(source:Araport11)
AT4G35300.2	protein_coding	tonoplast monosaccharide transporter2		tonoplast monosaccharide transporter2;(source:Araport11)
AT4G35410.2	protein_coding	Clathrin adaptor complex small chain family protein		Clathrin adaptor complex small chain family protein;(source:Araport11)
AT4G24565.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT4G24500.2	protein_coding	hydroxyproline-rich glycoprotein family protein	Encodes a proline-rich protein SICKLE (SIC). Required for development and abiotic stress tolerance. Involved in microRNA biogenesis. It is involved in mRNA splicing. It is a single copy gene in Arabidopsis and likely specific to higher plants. Along with RCN1, it functions in regulating auxin transport processes in part by regulating the recycling of PIN1 and PIN2 auxin transporters. It is required for circadian clock temperature responses.	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G24550.2	protein_coding	Clathrin adaptor complexes medium subunit family protein	Encodes a component of the AP4 complex and is involved in vacuolar sorting of storage proteins.	Clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT4G38495.1	protein_coding			chromatin-remodeling complex subunit;(source:Araport11)
AT4G23290.2	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 21	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 21;(source:Araport11)
AT4G23210.2	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 13	Encodes a Cysteine-rich receptor-like kinase (CRK13).  Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.	cysteine-rich RLK (RECEPTOR-like protein kinase) 13;(source:Araport11)
AT4G28362.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT4G28520.3	protein_coding	cruciferin 3	Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	cruciferin 3;(source:Araport11)
AT4G28520.2	protein_coding	cruciferin 3	Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	cruciferin 3;(source:Araport11)
AT4G38600.2	protein_coding	HEAT repeat ;HECT-domain (ubiquitin-transferase)	encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.	HECT ubiquitin protein ligase family protein KAK;(source:Araport11)
AT4G37890.2	protein_coding	Zinc finger (C3HC4-type RING finger) family protein		Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT4G38240.2	protein_coding	alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative	Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.	alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase;(source:Araport11)
AT4G38090.2	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		ribosomal protein S5 domain protein;(source:Araport11)
AT4G38220.2	protein_coding	Peptidase M20/M25/M40 family protein		Peptidase M20/M25/M40 family protein;(source:Araport11)
AT4G26070.2	protein_coding	MAP kinase/ ERK kinase 1	Member of MAP Kinase Kinase.  Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding.	MAP kinase/ ERK kinase 1;(source:Araport11)
AT4G26140.2	protein_coding	beta-galactosidase 12	putative beta-galactosidase	beta-galactosidase 12;(source:Araport11)
AT4G07990.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G20260.2	protein_coding	plasma-membrane associated cation-binding protein 1	Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and  PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels. The mRNA is cell-to-cell mobile.	plasma-membrane associated cation-binding protein 1;(source:Araport11)
AT4G20300.2	protein_coding	Protein of unknown function (DUF1639)		Serine/Threonine-kinase, putative (DUF1639);(source:Araport11)
AT4G06521.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.8e-23 P-value blast match to GB:NP_038604 L1 repeat, Tf subfamily, member 26 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G06525.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.8e-68 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT4G06541.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06530.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06540.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.5e-89 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06533.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06539.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.6e-174 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06531.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06536.1	protein_coding	SPla/RYanodine receptor (SPRY) domain-containing protein		SPla/RYanodine receptor (SPRY) domain-containing protein;(source:Araport11)
AT4G06529.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.7e-246 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G06534.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G06538.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06535.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06523.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.1e-36 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT4G06537.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.5e-20 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06515.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06528.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 3.4e-78 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT4G06520.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06544.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06527.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.3e-72 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G06522.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-22 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G06543.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.1e-132 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06519.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.4e-41 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06532.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-268 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06518.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06542.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06526.1	protein_coding	nucleic acid binding;zinc ion binding		nucleic acid binding / zinc ion binding protein;(source:Araport11)
AT4G06517.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06524.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.9e-264 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06514.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.4e-226 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06516.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G39040.2	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain protein		RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT4G20115.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: AGT);(source:Araport11, TAIR10)
AT4G21560.2	protein_coding	vacuolar protein sorting-associated protein 28 homolog 1		vacuolar protein sorting-associated protein-like protein;(source:Araport11)
AT4G13830.2	protein_coding	DNAJ-like 20	DnaJ-like protein (J20); nuclear gene	DNAJ-like 20;(source:Araport11)
AT4G13850.2	protein_coding	glycine-rich RNA-binding protein 2	Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.	glycine-rich RNA-binding protein 2;(source:Araport11)
AT4G13245.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT4G34000.2	protein_coding	abscisic acid responsive elements-binding factor 3	Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.	abscisic acid responsive elements-binding factor 3;(source:Araport11)
AT4G30310.2	protein_coding	FGGY family of carbohydrate kinase		FGGY family of carbohydrate kinase;(source:Araport11)
AT4G30310.3	protein_coding	FGGY family of carbohydrate kinase		FGGY family of carbohydrate kinase;(source:Araport11)
AT4G06508.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.5e-72 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G06506.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.1e-255 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06513.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06512.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-29 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06511.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06507.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06510.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.3e-15 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G06509.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.0e-27 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G09720.2	protein_coding	RAB GTPase homolog G3A		RAB GTPase homolog G3A;(source:Araport11)
AT4G29415.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT4G11985.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT4G12065.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT4G12115.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT4G12005.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G12040.2	protein_coding	A20/AN1-like zinc finger family protein		A20/AN1-like zinc finger family protein;(source:Araport11)
AT4G23430.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G28706.2	protein_coding	pfkB-like carbohydrate kinase family protein		pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT4G06750.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 3.0e-60 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G06728.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06724.1);(source:TAIR10)
AT4G06730.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06714.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06726.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.6e-284 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06712.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06724.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06728.1);(source:TAIR10)
AT4G06736.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06722.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.3e-199 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06734.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 8.0e-279 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06732.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06720.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06738.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06748.1	pseudogene			pseudogene of TSK-associating protein 1;(source:Araport11)
AT4G06718.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, expressed protein;(source:TAIR10)
AT4G06742.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.8e-29 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06716.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37015.1);(source:TAIR10)
AT4G06746.1	protein_coding	related to AP2 9	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.9). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1 and RAP2.10.	related to AP2 9;(source:Araport11)
AT4G06744.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G18070.2	protein_coding			suppressor;(source:Araport11)
AT4G35450.4	protein_coding	ankyrin repeat-containing protein 2	Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.	ankyrin repeat-containing protein 2;(source:Araport11)
AT4G25990.2	protein_coding	CCT motif family protein	chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes	CCT motif family protein;(source:Araport11)
AT4G25080.3	protein_coding	magnesium-protoporphyrin IX methyltransferase	Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.	magnesium-protoporphyrin IX methyltransferase;(source:Araport11)
AT4G25080.2	protein_coding	magnesium-protoporphyrin IX methyltransferase	Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.	magnesium-protoporphyrin IX methyltransferase;(source:Araport11)
AT4G25100.3	protein_coding	Fe superoxide dismutase 1	Fe-superoxide dismutase	Fe superoxide dismutase 1;(source:Araport11)
AT4G25100.2	protein_coding	Fe superoxide dismutase 1	Fe-superoxide dismutase	Fe superoxide dismutase 1;(source:Araport11)
AT4G06702.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06710.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06708.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.9e-289 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06704.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to retrotransposons;(source:TAIR10)
AT4G06479.1	protein_coding	zinc ion binding;nucleic acid binding		nucleic acid binding / zinc ion binding protein;(source:Araport11)
AT4G06477.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.1e-112 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G06552.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.6e-69 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G06553.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.2e-21 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT4G06547.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.1e-14 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06551.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06556.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 3.3e-152 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G06555.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06546.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.4e-161 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G06550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.8e-107 P-value blast match to gb|AAL06420.1|AF378078_1 reverse transcriptase (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT4G06554.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.1e-211 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06545.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-127 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G06549.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, temporary gene name assignment;(source:TAIR10)
AT4G06548.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.5e-39 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G01455.1	pre_trna	pre-tRNA		tRNA-Glu (anticodon: TTC)
AT4G01450.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G34975.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: AGT);(source:Araport11, TAIR10)
AT4G31895.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: AGT);(source:Araport11, TAIR10)
AT4G31990.2	protein_coding	aspartate aminotransferase 5	Encodes a plastid-localized aspartate aminotransferase.  Does not display any PAT (glutamate/aspartate-prephenate aminotransferase) activity even in the presence of a high concentration of prephenate.	aspartate aminotransferase 5;(source:Araport11)
AT4G32265.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCT);(source:Araport11, TAIR10)
AT4G32250.2	protein_coding	Protein kinase superfamily protein	Encodes a component of the TOC machinery that phosphorylates import receptors, supports pre-protein import, and contributes to efficient chloroplast biogenesis.	Protein kinase superfamily protein;(source:Araport11)
AT4G26910.3	protein_coding	Dihydrolipoamide succinyltransferase		Dihydrolipoamide succinyltransferase;(source:Araport11)
AT4G26910.2	protein_coding	Dihydrolipoamide succinyltransferase		Dihydrolipoamide succinyltransferase;(source:Araport11)
AT4G26940.2	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT4G26790.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT4G26965.1	protein_coding	NADH:ubiquinone oxidoreductase, 17.2kDa subunit		NADH:ubiquinone oxidoreductase, 17.2kDa subunit;(source:Araport11)
AT4G34415.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: CCT);(source:Araport11, TAIR10)
AT4G34430.3	protein_coding	DNA-binding family protein	Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002).	DNA-binding family protein;(source:Araport11)
AT4G34430.2	protein_coding	DNA-binding family protein	Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002).	DNA-binding family protein;(source:Araport11)
AT4G05470.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G05320.4	protein_coding	polyubiquitin 10	One of five polyubiquitin genes in A. thaliana.  These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. The mRNA is cell-to-cell mobile.	polyubiquitin 10;(source:Araport11)
AT4G05320.3	protein_coding	polyubiquitin 10	One of five polyubiquitin genes in A. thaliana.  These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. The mRNA is cell-to-cell mobile.	polyubiquitin 10;(source:Araport11)
AT4G05320.2	protein_coding	polyubiquitin 10	One of five polyubiquitin genes in A. thaliana.  These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. The mRNA is cell-to-cell mobile.	polyubiquitin 10;(source:Araport11)
AT4G37175.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
AT4G36635.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: TAT);(source:Araport11, TAIR10)
AT4G37070.3	protein_coding	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein	Patatin-related phospholipase A. Expressed strongly  and exclusively in roots. AtplaIVA-null mutants have reduced lateral root development. Phosphorylation by calcium-dependent protein kinases in vitro  enhances its activity.	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein;(source:Araport11)
AT4G37070.2	protein_coding	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein	Patatin-related phospholipase A. Expressed strongly  and exclusively in roots. AtplaIVA-null mutants have reduced lateral root development. Phosphorylation by calcium-dependent protein kinases in vitro  enhances its activity.	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein;(source:Araport11)
AT4G36530.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G37180.2	protein_coding	Homeodomain-like superfamily protein	UIF1 is a nuclear and cytoplasmically localized myb-domain containing member of the GARP G2-like subfamily of transcription factors. Interacts with ULT1 and binds to the WUS promoter. UIF1 binding domains are also found in CUC and AG promoters suggesting they are also direct targets.  This locus was also identified as a putative cytoskeletal protein in a yeast screen.	Homeodomain-like superfamily protein;(source:Araport11)
AT4G36690.2	protein_coding	U2 snRNP auxilliary factor, large subunit, splicing factor	Regulates flowering time and displays a redundant role in pollen tube growth together with AtU2AF65b.	U2 snRNP auxilliary factor, large subunit, splicing factor;(source:Araport11)
AT4G36730.2	protein_coding	G-box binding factor 1	member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box	G-box binding factor 1;(source:Araport11)
AT4G36540.2	protein_coding	BR enhanced expression 2	Encodes the brassinosteroid signaling component BEE2 (BR-ENHANCED EXPRESSION 2). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	BR enhanced expression 2;(source:Araport11)
AT3G29350.2	protein_coding	histidine-containing phosphotransmitter 2	Encodes AHP2, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function in His-to-Asp phosphorelay signal transduction and as redundant positive regulators of cytokinin signaling.  Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	histidine-containing phosphotransmitter 2;(source:Araport11)
AT3G27750.1	protein_coding		Encodes a pentatricopeptide repeat (PPR) protein required for the splicing of specific  group II introns. Null alleles are embryo lethal.	PPR containing protein;(source:Araport11)
AT3G27700.2	protein_coding	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein		zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT3G49590.2	protein_coding	Autophagy-related protein 13		Autophagy-related protein 13;(source:Araport11)
AT3G48515.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT3G56825.1	small_nuclear_rna	U2.4; snRNA		U2-4;(source:Araport11)
AT3G56705.1	small_nuclear_rna	U2.6; snRNA		U2-6;(source:Araport11)
AT3G56860.3	protein_coding	UBP1-associated protein 2A	encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.	UBP1-associated protein 2A;(source:Araport11)
AT3G57520.2	protein_coding	seed imbibition 2	SIP2 encodes a raffinose-specific alpha-galactosidase that catalyzes the breakdown of raffinose into alpha-galatose and sucrose. This enzyme may function in unloading raffinose from the phloem as part of sink metabolism. Although it was originally predicted to act as a raffinose synthase (RS), that activity was not observed for recombinant SIP2.	seed imbibition 2;(source:Araport11)
AT3G06665.1	pre_trna	pre-tRNA		pre-tRNA tRNA-His (anticodon: GTG);(source:Araport11, TAIR10)
AT3G60590.2	protein_coding			cytochrome P450 family protein;(source:Araport11)
AT3G10770.2	protein_coding	Single-stranded nucleic acid binding R3H protein		Single-stranded nucleic acid binding R3H protein;(source:Araport11)
AT3G04280.2	protein_coding	response regulator 22	Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators.	response regulator 22;(source:Araport11)
AT3G30345.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT3G46875.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT3G56590.1	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G56410.2	protein_coding	Protein of unknown function (DUF3133)		hypothetical protein (DUF3133);(source:Araport11)
AT3G54810.2	protein_coding	Plant-specific GATA-type zinc finger transcription factor family protein	Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified.	Plant-specific GATA-type zinc finger transcription factor family protein;(source:Araport11)
AT3G54750.2	protein_coding			downstream neighbor of Son;(source:Araport11)
AT3G25585.2	protein_coding	aminoalcoholphosphotransferase	aminoalcoholphosphotransferase (AAPT2)	aminoalcoholphosphotransferase;(source:Araport11)
AT3G01090.2	protein_coding	SNF1 kinase homolog 10	encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase	SNF1 kinase homolog 10;(source:Araport11)
AT3G53270.3	protein_coding	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein		Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein;(source:Araport11)
AT3G53270.2	protein_coding	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein		Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein;(source:Araport11)
AT3G60805.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT3G60880.2	protein_coding	dihydrodipicolinate synthase 1	Encodes a dihydropicolinate synthase involved in lysine biosynthesis. The enzyme is allosterically inhibited by lysine. It is predicted to localize to the cholorplast.	dihydrodipicolinate synthase 1;(source:Araport11)
AT3G30725.1	protein_coding	glutamine dumper 6	Encodes a member of the GDU (glutamine dumper) family proteins involved in amino acid export: At4g31730 (GDU1), At4g25760 (GDU2), At5g57685 (GDU3), At2g24762 (GDU4), At5g24920 (GDU5), At3g30725 (GDU6) and At5g38770 (GDU7).	glutamine dumper 6;(source:Araport11)
AT3G50665.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
AT3G60075.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT3G60180.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G16420.2	protein_coding	PYK10-binding protein 1	The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular  chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests. The mRNA is cell-to-cell mobile.	PYK10-binding protein 1;(source:Araport11)
AT3G16430.2	protein_coding	jacalin-related lectin 31	Encodes a protein that increases the beta-glucosidase activities of three scopolin glucosidases in vitro.	jacalin-related lectin 31;(source:Araport11)
AT3G12585.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: CCG);(source:Araport11, TAIR10)
AT3G12385.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT3G12490.2	protein_coding	cystatin B	Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmotic, cold stress).	cystatin B;(source:Araport11)
AT3G12570.2	protein_coding	FYD		FYD;(source:Araport11)
AT3G48275.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: TGT);(source:Araport11, TAIR10)
AT3G48330.2	protein_coding	protein-l-isoaspartate methyltransferase 1	Encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.	protein-l-isoaspartate methyltransferase 1;(source:Araport11)
AT3G61105.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: AAG);(source:Araport11, TAIR10)
AT3G61040.2	protein_coding	cytochrome P450, family 76, subfamily C, polypeptide 7	encodes a protein with cytochrome P450 domain	cytochrome P450, family 76, subfamily C, polypeptide 7;(source:Araport11)
AT3G04525.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: CCG);(source:Araport11, TAIR10)
AT3G52285.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT3G52345.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT3G48160.2	protein_coding	DP-E2F-like 1	E2F-like protein, an inhibitor of the endocycle, preserves the mitotic state of proliferating cells by suppressing transcription of genes that are required for cells to enter the DNA endoreduplication cycle.	DP-E2F-like 1;(source:Araport11)
AT3G01313.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G01316.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G10035.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCT);(source:Araport11, TAIR10)
AT3G10015.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAA);(source:Araport11, TAIR10)
AT3G47348.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G47347.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G47342.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G47340.2	protein_coding	glutamine-dependent asparagine synthase 1	encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	glutamine-dependent asparagine synthase 1;(source:Araport11)
AT3G47340.3	protein_coding	glutamine-dependent asparagine synthase 1	encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	glutamine-dependent asparagine synthase 1;(source:Araport11)
AT3G47370.2	protein_coding	Ribosomal protein S10p/S20e family protein		Ribosomal protein S10p/S20e family protein;(source:Araport11)
AT3G47450.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a protein with similarity to the bacterial YqeH GTPase required for proper ribosome assembly. Mutant analyses show that this protein regulates growth and hormonal signaling and attenuates oxidative stress and reactive oxygen species (ROS). It also seems to be involved in regulating leaf senescence, cell death, nitric oxide biosynthesis in response to ABA but not exogenous H2O2. This protein also appears to be required for proper plastid biogenesis. Levels of several plastid-localized proteins, including RBCL, ClpP1, and the MEP biosynthesis enzymes DXS and DXR are altered in rif1-1 mutants. This protein was originally characterized as a mitrochondrial-localized nitric oxide synthase, but, the synthase activity was later disproven. In addition, new studies with GFP fusion proteins and chloroplast import assays suggest that this protein is found in chloroplasts.  Its localization to the chloroplast is enhanced by S-acylation.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G48745.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: TTG);(source:Araport11, TAIR10)
AT3G48860.2	protein_coding			coiled-coil protein;(source:Araport11)
AT3G14855.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT3G14800.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.1e-83 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT3G12070.2	protein_coding	RAB geranylgeranyl transferase beta subunit 2		RAB geranylgeranyl transferase beta subunit 2;(source:Araport11)
AT3G12140.2	protein_coding	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein		Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein;(source:Araport11)
AT3G63003.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: TGC);(source:Araport11, TAIR10)
AT3G63006.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: TGC);(source:Araport11, TAIR10)
AT3G62940.2	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G61390.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G50505.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
AT3G50550.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G07185.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT3G07115.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
AT3G07140.2	protein_coding	GPI transamidase component Gpi16 subunit family protein		GPI transamidase component Gpi16 subunit family protein;(source:Araport11)
AT3G11670.2	protein_coding	UDP-Glycosyltransferase superfamily protein	Responsible for the final assembly of galactolipids in photosynthetic membranes.  Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE).	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G44630.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G44630.3	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G62285.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT3G62245.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: TGC);(source:Araport11, TAIR10)
AT3G62120.2	protein_coding	Class II aaRS and biotin synthetases superfamily protein	Encodes a cytosolic prolyl-tRNA synthetase.	Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT3G62260.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G48050.2	protein_coding	BAH domain ;TFIIS helical bundle-like domain	Encodes a large protein with N-terminal bromo-adjacent homology (BAH) and transcription elongation factor S-II (TFS2N) domains and two C-terminal GW (glycine and tryptophan) repeats. It is nuclear and colocalizes with the processing-body component DCP1 in the cytoplasm. SOU is a component of the miRNA pathway and is involved in translational repression.	protein SUO;(source:Araport11)
AT3G08940.2	protein_coding	light harvesting complex photosystem II	Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of photosystem II The mRNA is cell-to-cell mobile.	light harvesting complex photosystem II;(source:Araport11)
AT3G08890.2	protein_coding	Protein of unknown function, DUF538		hypothetical protein (Protein of unknown function, DUF538);(source:Araport11)
AT3G49925.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT3G45100.2	protein_coding	UDP-Glycosyltransferase superfamily protein	encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G01390.2	protein_coding	vacuolar membrane ATPase 10	Subunit G of the vacuolar membrane ATPAse complex	vacuolar membrane ATPase 10;(source:Araport11)
AT3G05090.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a DCAF protein.  Mutants are defective in lateral root development and suggest roles for DDB1­Cul4–mediated protein degradation in regulating auxin accumulation during lateral root primordium development and lateral root meristem emergence.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G54350.2	protein_coding	Forkhead-associated (FHA) domain-containing protein 		Forkhead-associated (FHA) domain-containing protein;(source:Araport11)
AT3G62400.2	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT3G03950.2	protein_coding	evolutionarily conserved C-terminal region 1	Physically interacts with CIPK1. Located in the nucleus.	evolutionarily conserved C-terminal region 1;(source:Araport11)
AT3G58035.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT3G57800.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G28695.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT3G28685.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT3G28630.2	protein_coding	Protein of unknown function (DUF569)		actin cross-linking protein, putative (DUF569);(source:Araport11)
AT3G28270.2	protein_coding	Protein of unknown function (DUF677)	AFL1 was first identified by immunoscreening an Arabidopsis expression library with antisera recognizing mammalian &#946;1-integrin. It is a peripheral membrane protein associated with endomembranes and plasmamembrane. Based on overexpression and knockdown phenotypes, AFL1 is postulated to function in regulation of growth and proline accumulation in response to drought. AFL1 protein co-localizes with clatharin coated vesicles and has been shown to interact with itself and several endomembrane associated proteins.	transmembrane protein, putative (DUF677);(source:Araport11)
AT3G18520.2	protein_coding	histone deacetylase 15	Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation.	histone deacetylase 15;(source:Araport11)
AT3G29240.2	protein_coding	Protein of unknown function (DUF179)		PPR containing protein (DUF179);(source:Araport11)
AT3G29185.2	protein_coding	Domain of unknown function (DUF3598)	Encodes a chloroplast protein that interacts with the CF1&#946;, &#947;, and &#949; subunits of the chloroplast ATP synthase and is required for assembly of its F1 module. The protein is comprised primarily of two   &#946;-barrels and acts as a chaperone orchestrating the early steps of   the CF1 assembly pathway via specific interaction with the CF1 &#946;, &#947;, and &#949; subunits.	glutamate NMDA receptor subunit epsilon-1, putative (DUF3598);(source:Araport11)
AT3G21260.2	protein_coding	Glycolipid transfer protein (GLTP) family protein		Glycolipid transfer protein (GLTP) family protein;(source:Araport11)
AT3G21175.2	protein_coding	ZIM-like 1	member of a novel family of plant-specific GATA-type transcription factors.	ZIM-like 1;(source:Araport11)
AT3G29095.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT3G19235.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: CCT);(source:Araport11, TAIR10)
AT3G18815.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: AGT);(source:Araport11, TAIR10)
AT3G18780.2	protein_coding	actin 2	Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs.	actin 2;(source:Araport11)
AT3G16857.2	protein_coding	response regulator 1	Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Also involved in cytokinin-dependent inhibition of hypocotyl elongation and cytokinin-dependent greening and shooting in tissue culture. ARR1, ARR10, and ARR12 are redundant regulators of drought response, with ARR1 being the most critical. ARR1, ARR10 and ARR12 redundantly bind to the promoter of WUSCHEL (WUS), directly activate its transcription. In parallel, ARR1, ARR10 and ARR12 repress the expression of YUCCAs (YUCs), which encode a key enzyme for auxin biosynthesis, indirectly promoting WUS induction. The regulation of ARR1, ARR10 and ARR12 on WUS and YUCs is required for regeneration and maintenance of shoot meristem.	response regulator 1;(source:Araport11)
AT3G15980.3	protein_coding	Coatomer, beta' subunit		Coatomer, beta subunit;(source:Araport11)
AT3G15980.2	protein_coding	Coatomer, beta' subunit		Coatomer, beta subunit;(source:Araport11)
AT3G15690.2	protein_coding	Single hybrid motif superfamily protein		Single hybrid motif superfamily protein;(source:Araport11)
AT3G15880.2	protein_coding	WUS-interacting protein 2		WUS-interacting protein 2;(source:Araport11)
AT3G21805.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G21700.3	protein_coding	Ras-related small GTP-binding family protein	Monomeric G protein. Expressed in root epidermal cells that are destined to become atrichoblasts. Also expressed during pollen development and in the pollen tube tip.	Ras-related small GTP-binding family protein;(source:Araport11)
AT3G21700.2	protein_coding	Ras-related small GTP-binding family protein	Monomeric G protein. Expressed in root epidermal cells that are destined to become atrichoblasts. Also expressed during pollen development and in the pollen tube tip.	Ras-related small GTP-binding family protein;(source:Araport11)
AT3G13525.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G13435.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G13460.2	protein_coding	evolutionarily conserved C-terminal region 2	Physically interacts with CIPK1.	evolutionarily conserved C-terminal region 2;(source:Araport11)
AT3G18100.2	protein_coding	myb domain protein 4r1	Member of the R2R3 transcription factor gene family.	myb domain protein 4r1;(source:Araport11)
AT3G26935.1	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT3G15585.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT3G20365.1	pre_trna	pre-tRNA		tRNA-Tyr (anticodon: GTA)
AT3G19820.2	protein_coding	cell elongation protein / DWARF1 / DIMINUTO (DIM)	Involved in the conversion of the early brassinosteroid precursor  24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype.  DWF1 is a Ca2+-dependent calmodulin-binding protein.	cell elongation protein / DWARF1 / DIMINUTO (DIM);(source:Araport11)
AT3G27110.2	protein_coding	Peptidase family M48 family protein	PGM48 is a member of a plant specific clade of metallo-endopeptidase proteins. It is found in plastoglobules. Analysis of over-expression and loss of function phenotypes suggests PGM48 may have a role in positively regulating senescence.	Peptidase family M48 family protein;(source:Araport11)
AT3G20885.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT3G20810.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	JMJD5 encodes a protein which contains  a jumonji-C (jmjC) domain. jmjd5 mutant plants have a short-period circadian phenotype. JMJD5 has histone demethylase activity and interacts with EFM to repress FT.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G24612.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G24495.1	protein_coding	MUTS homolog 7	encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2*MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts.	MUTS homolog 7;(source:Araport11)
AT3G14475.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G14420.3	protein_coding	Aldolase-type TIM barrel family protein	Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance. The mRNA is cell-to-cell mobile.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G14420.2	protein_coding	Aldolase-type TIM barrel family protein	Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance. The mRNA is cell-to-cell mobile.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G22238.1	pseudogene			pseudogene of ribulose-bisphosphate carboxylases;(source:Araport11)
AT3G13624.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G27555.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT3G28140.2	protein_coding	RNA ligase/cyclic nucleotide phosphodiesterase family protein		RNA ligase/cyclic nucleotide phosphodiesterase family protein;(source:Araport11)
AT3G28080.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G19720.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP-ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G19570.2	protein_coding	Family of unknown function (DUF566) 	Encodes SCO3 (snowy cotyledon3), a member of a largely uncharacterized protein family unique to the plant kingdom. The sco3-1 mutation alters chloroplast morphology and development, reduces chlorophyll accumulation, impairs thylakoid formation and photosynthesis in seedlings, and results in photoinhibition under extreme CO(2) concentrations in mature leaves. SCO3 is targeted to the periphery of peroxisomes.	SNOWY COTYLEDON protein (DUF566);(source:Araport11)
AT3G07700.2	protein_coding	Protein kinase superfamily protein	ABC1K7 is a member of an atypical protein kinase family that is induced by salt stress. Loss of function mutations affect the metabolic profile of chloroplast lipids. It appears to function along with ABC1K8 in mediating lipid membrane changes in response to stress.	Protein kinase superfamily protein;(source:Araport11)
AT3G07568.1	protein_coding			fanconi anemia group D2 protein;(source:Araport11)
AT3G07750.2	protein_coding	3'-5'-exoribonuclease family protein		3-5-exoribonuclease family protein;(source:Araport11)
AT3G14230.3	protein_coding	related to AP2 2	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	related to AP2 2;(source:Araport11)
AT3G26690.2	protein_coding	nudix hydrolase homolog 13	Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.	nudix hydrolase homolog 13;(source:Araport11)
AT3G26680.2	protein_coding	DNA repair metallo-beta-lactamase family protein	involved in a SNM-dependent recombinational  repair process of oxidatively induced DNA damage.	DNA repair metallo-beta-lactamase family protein;(source:Araport11)
AT3G26670.2	protein_coding	Protein of unknown function (DUF803)		magnesium transporter, putative (DUF803);(source:Araport11)
AT3G17609.2	protein_coding	HY5-homolog	Encodes a homolog of HY5 (HYH).  Involved in phyB signaling pathway.	HY5-homolog;(source:Araport11)
AT3G17609.1	protein_coding	HY5-homolog	Encodes a homolog of HY5 (HYH).  Involved in phyB signaling pathway.	HY5-homolog;(source:Araport11)
AT3G17611.1	protein_coding	RHOMBOID-like protein 14		RHOMBOID-like protein 14;(source:Araport11)
AT3G22235.1	protein_coding			cysteine-rich TM module stress tolerance protein;(source:Araport11)
AT3G15530.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G13223.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: AAG);(source:Araport11, TAIR10)
AT3G13080.2	protein_coding	multidrug resistance-associated protein 3	encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites.  The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.	multidrug resistance-associated protein 3;(source:Araport11)
AT3G21475.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT3G21500.2	protein_coding	1-deoxy-D-xylulose 5-phosphate synthase 1	Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.	1-deoxy-D-xylulose 5-phosphate synthase 1;(source:Araport11)
AT3G18240.2	protein_coding	Ribosomal protein S24/S35, mitochondrial		Ribosomal protein S24/S35;(source:Araport11)
AT3G14735.1	small_nuclear_rna	U6-1; snRNA		U6;(source:Araport11)
AT3G16630.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Kinesin-13A localized to entire Golgi stacks. Involved in trichome development.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G16760.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G13060.2	protein_coding	evolutionarily conserved C-terminal region 5		evolutionarily conserved C-terminal region 5;(source:Araport11)
AT3G13062.3	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT3G13062.2	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT3G17265.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G17240.3	protein_coding	lipoamide dehydrogenase 2	lipoamide dehydrogenase precursor	lipoamide dehydrogenase 2;(source:Araport11)
AT3G17310.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes DRM3 (Domains Rearranged Methyltransferase3), a catalytically mutated paralog of the cytosine methyltransferase DRM2. Despite being catalytically mutated, DRM3 is required for normal maintenance of non-CG DNA methylation, establishment of RNA-directed DNA methylation triggered by repeat sequences and accumulation of repeat-associated small RNAs.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G26510.2	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT3G26570.2	protein_coding	phosphate transporter 2;1	low affinity phosphate transporter	phosphate transporter 2;(source:Araport11)
AT3G12050.2	protein_coding	Aha1 domain-containing protein		Aha1 domain-containing protein;(source:Araport11)
AT3G26747.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: CAC);(source:Araport11, TAIR10)
AT3G26890.2	protein_coding			meiosis chromosome segregation family protein;(source:Araport11)
AT3G16552.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT3G16520.3	protein_coding	UDP-glucosyl transferase 88A1		UDP-glucosyl transferase 88A1;(source:Araport11)
AT3G13965.1	pseudogene		Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of proline-rich family protein;(source:Araport11)
AT3G13335.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT3G13300.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes VCS (VARICOSE).   Involved in mRNA decapping.  VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570).  Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro.  DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies.  Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology.  VCS is also required for leaf development.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G13855.1	small_nuclear_rna	U6-26; snRNA		U6;(source:Araport11)
AT3G18860.2	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G22425.1	protein_coding	imidazoleglycerol-phosphate dehydratase	Encodes imidazoleglycerolphosphate dehydratase.	imidazoleglycerol-phosphate dehydratase;(source:Araport11)
AT3G22425.2	protein_coding	imidazoleglycerol-phosphate dehydratase	Encodes imidazoleglycerolphosphate dehydratase.	imidazoleglycerol-phosphate dehydratase;(source:Araport11)
AT3G22380.1	protein_coding	time for coffee	Encodes a nucleus-acting plant-specific clock regulator working close to the central oscillator and affecting the circadian gating of light responses.  Circadian gating is the alteration of circadian phase according to the photoperiod of the entraining day/light cycle and the rhythmic antagonism of light responses in the early subjective night.  TIC differentially regulates CCA1 and PRR9 from LHY, with LHY expression as a dominant genetic target of TIC action. Also shown to be invoved in the maintenance of Arabidopsis thaliana metabolic homeostasis.	time for coffee;(source:Araport11)
AT3G14080.2	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT3G14120.2	protein_coding			nuclear pore complex protein;(source:Araport11)
AT3G63480.2	protein_coding	ATP binding microtubule motor family protein	Encodes a protein with sequence similarity to rice kinesin protein. Homozygous loss of function mutations have reduced seed set due to defects in megagametogenesis and reduced pollen viability.	ATP binding microtubule motor family protein;(source:Araport11)
AT3G63460.2	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G63420.2	protein_coding	Ggamma-subunit 1	heterotrimeric G protein gamma-subunit (AGG1) mRNA,	Ggamma-subunit 1;(source:Araport11)
AT3G63500.2	protein_coding	Protein of unknown function (DUF1423)	Encodes a PHD-finger protein that, with TTA2, is redundantly required for MP-dependent embryonic root meristem initiation.	fibronectin type III domain protein (DUF1423);(source:Araport11)
AT3G63400.2	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G25820.1	protein_coding	terpene synthase-like sequence-1,8-cineole	Encodes the monoterpene 1,8-cineole synthase, atTPS-Cin. This polypeptide was also shown to synthesize other monoterpenes albeit in minor quantities. The same polypeptide is encoded at two different loci, the result of gene duplication: at3g25820 and at3g25830.	terpene synthase-like sequence-1,8-cineole;(source:Araport11)
AT3G29034.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G16800.2	protein_coding	Protein phosphatase 2C family protein	EGR3 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress, EGR3 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT3G27430.2	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	Encodes 20S proteasome beta subunit PBB1 (PBB1).	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT3G27865.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G27825.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT3G27845.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT3G15055.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: TAT);(source:Araport11, TAIR10)
AT3G14930.2	protein_coding	Uroporphyrinogen decarboxylase		Uroporphyrinogen decarboxylase;(source:Araport11)
AT3G14890.2	protein_coding	phosphoesterase	Encodes a base excision repair protein that, together with APE2, it plays overlapping roles in the maintenance of epigenome and genome stability in plants.	phosphoesterase;(source:Araport11)
AT3G15030.2	protein_coding	TCP family transcription factor 4	Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.	TCP family transcription factor 4;(source:Araport11)
AT3G14990.2	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes a homolog of animal DJ-1 superfamily protein.  In the A. thaliana genome, three genes encoding close homologs of human DJ-1 were identified AT3G14990 (DJ1A), AT1G53280 (DJ1B) and AT4G34020 (DJ1C).  Among the three homologs, DJ1C is essential for chloroplast development and viability.  It exhibits glyoxalase activity towards glyoxal and methylglyoxal. The mRNA is cell-to-cell mobile.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT3G23172.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G17100.2	protein_coding	sequence-specific DNA binding transcription factors		sequence-specific DNA binding transcription factor;(source:Araport11)
AT3G25715.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT3G25717.1	protein_coding	ROTUNDIFOLIA like 16		ROTUNDIFOLIA like 16;(source:Araport11)
AT3G18952.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT3G19010.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G20630.1	protein_coding	ubiquitin-specific protease 14	Encodes a ubiquitin-specific protease.  Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage.  Also involved in root responses to phosphate deficiency.	ubiquitin-specific protease 14;(source:Araport11)
AT3G10915.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G58196.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G58193.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G58165.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT3G52955.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAA);(source:Araport11, TAIR10)
AT3G52920.2	protein_coding	Family of unknown function (DUF662) 		transcriptional activator (DUF662);(source:Araport11)
AT3G52890.2	protein_coding	KCBP-interacting protein kinase	KCBP-interacting protein kinase interacts specifically with the tail region of KCBP	KCBP-interacting protein kinase;(source:Araport11)
AT3G09922.1	protein_coding	induced by phosphate starvation1	Encodes a gene product whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.	induced by phosphate starvation1;(source:Araport11)
AT3G09810.1	protein_coding	isocitrate dehydrogenase VI	Encodes a catalytic subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase	isocitrate dehydrogenase VI;(source:Araport11)
AT3G04630.2	protein_coding	WVD2-like 1	Member of a small gene family  which have a KLEEK domain which may be involved in  protein- protein interactions. Over expression of WDL1 results in abnormal root development.	WVD2-like 1;(source:Araport11)
AT3G04590.2	protein_coding	AT hook motif DNA-binding family protein	AHL proteins contain two conserved structural units, the AT-hook motif and DUF296 domain.	AT hook motif DNA-binding family protein;(source:Araport11)
AT3G04770.2	protein_coding	40s ribosomal protein SA B		40s ribosomal protein SA B;(source:Araport11)
AT3G22942.1	protein_coding	G-protein gamma subunit 2	heterotrimeric G-protein gamma subunit 2(AGG2)	G-protein gamma subunit 2;(source:Araport11)
AT3G53775.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT3G53965.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT3G54010.2	protein_coding	FKBP-type peptidyl-prolyl cis-trans isomerase family protein	Immunophilin-like protein similar to the p59 FK506-binding protein (FKBP52). Shows rotamase activity and contains an FKBP-like domain and three tetratricopeptide repeat units. Members of this class of mutation show ectopic cell proliferation in cotyledons. Gene may be alternatively spliced.  Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	FKBP-type peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G53780.2	protein_coding	RHOMBOID-like protein 4		RHOMBOID-like protein 4;(source:Araport11)
AT3G53900.2	protein_coding	uracil phosphoribosyltransferase	Encodes UPP, a plastidial uracil phosphoribosyltransferase (UPRT) involved in uracil salvage.  Loss-of-function mutation causes dramatic growth retardation, a pale-green to albino phenotype, abnormal root morphology and chloroplastic disorders.	uracil phosphoribosyltransferase;(source:Araport11)
AT3G53980.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G53740.2	protein_coding	Ribosomal protein L36e family protein		Ribosomal protein L36e family protein;(source:Araport11)
AT3G01705.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT3G01500.2	protein_coding	carbonic anhydrase 1	Encodes a putative beta-carbonic anhydrase betaCA1.  Together with betaCA4 (At1g70410) regulates CO2-controlled stomatal movements in guard cells.	carbonic anhydrase 1;(source:Araport11)
AT3G01500.3	protein_coding	carbonic anhydrase 1	Encodes a putative beta-carbonic anhydrase betaCA1.  Together with betaCA4 (At1g70410) regulates CO2-controlled stomatal movements in guard cells.	carbonic anhydrase 1;(source:Araport11)
AT3G01540.2	protein_coding	DEAD box RNA helicase 1	RNA HELICASE DRH1	DEAD box RNA helicase 1;(source:Araport11)
AT3G01590.2	protein_coding	Galactose mutarotase-like superfamily protein		Galactose mutarotase-like superfamily protein;(source:Araport11)
AT3G53570.2	protein_coding	FUS3-complementing gene 1	a  member of a CDC2-related kinase subfamily,  the LAMMER kinases. activates STE12-dependent functions in yeast.	serine/threonine-protein kinase AFC1;(source:Araport11)
AT3G53470.2	protein_coding			2,3-bisphosphoglycerate-independent phosphoglycerate mutase;(source:Araport11)
AT3G53440.2	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G53610.2	protein_coding	RAB GTPase homolog 8	GTPase AtRAB8 (atrab8)	RAB GTPase homolog 8;(source:Araport11)
AT3G53460.2	protein_coding	chloroplast RNA-binding protein 29	Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast.	chloroplast RNA-binding protein 29;(source:Araport11)
AT3G53520.2	protein_coding	UDP-glucuronic acid decarboxylase 1	Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis.  This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate  several cell wall biosynthetic enzymes.	UDP-glucuronic acid decarboxylase 1;(source:Araport11)
AT3G53500.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain	Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT3G52115.1	protein_coding	gamma response gene 1	Induced in response to ionizing radiation, shows basal expression in mitotically active cells and high expression in endoreduplicating cells.  May be involved in DNA damage-induced growth arrest.  Protein sequence contains a PEST destruction box.	protein gamma response 1;(source:Araport11)
AT3G52070.2	protein_coding			RNA/RNP complex-1-interacting phosphatase;(source:Araport11)
AT3G51960.2	protein_coding	basic leucine zipper 24	bZIP transcription  factor induced by salt stress and promoted salt tolerance. Localized to the cytoplasm and nucleus under control conditions and targeted preferentially to the nucleus under salt stress	basic leucine zipper 24;(source:Araport11)
AT3G20655.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: ACG);(source:Araport11, TAIR10)
AT3G06770.3	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G06770.2	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G52765.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT3G52720.2	protein_coding	alpha carbonic anhydrase 1	Encodes an alpha carbonic anhydrase (CAH1) located in the chloroplast stroma. Most chloroplast proteins are encoded by the nuclear genome and imported with the help of sorting signals that are intrinsic parts of the polypeptides. CAH1 takes an alternative route through the secretory pathway, and becomes N-glycosylated before entering the chloroplast.  Glycosylation and intra-molecular disulfide bridge fromation are necessary for the correct folding, ER export, trafficking and activity of the protein.	alpha carbonic anhydrase 1;(source:Araport11)
AT3G52780.2	protein_coding	Purple acid phosphatases superfamily protein		Purple acid phosphatases superfamily protein;(source:Araport11)
AT3G61545.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT3G61600.2	protein_coding	POZ/BTB containin G-protein 1	POZ/BTB containing-protein AtPOB1. Involvement in protein ubiquitylation is predicted based on physical interaction with CULLIN 3 proteins. The mRNA is cell-to-cell mobile.	POZ/BTB containin G-protein 1;(source:Araport11)
AT3G54890.3	protein_coding	photosystem I light harvesting complex gene 1	Encodes a component of the light harvesting complex associated with photosystem I.	chlorophyll a-b binding protein 6;(source:Araport11)
AT3G54890.2	protein_coding	photosystem I light harvesting complex gene 1	Encodes a component of the light harvesting complex associated with photosystem I.	chlorophyll a-b binding protein 6;(source:Araport11)
AT3G54940.2	protein_coding	Papain family cysteine protease		Papain family cysteine protease;(source:Araport11)
AT3G57340.2	protein_coding	Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)		DnaJ heat shock amino-terminal domain protein (DUF1977);(source:Araport11)
AT3G06335.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT3G06105.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT3G06110.2	protein_coding	MAPK phosphatase 2	Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.	MAPK phosphatase 2;(source:Araport11)
AT3G01850.2	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G01930.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G01790.2	protein_coding	Ribosomal protein L13 family protein		Ribosomal protein L13 family protein;(source:Araport11)
AT3G01860.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G12210.2	protein_coding	DNA binding		DNA binding protein;(source:Araport11)
AT3G55880.2	protein_coding	Alpha/beta hydrolase related protein	A gain-of-function mutant of SUE4 exhibited improved low sulphur tolerance.	Alpha/beta hydrolase related protein;(source:Araport11)
AT3G60340.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G60260.2	protein_coding	ELMO/CED-12 family protein		ELMO/CED-12 family protein;(source:Araport11)
AT3G51620.2	protein_coding	PAP/OAS1 substrate-binding domain superfamily		PAP/OAS1 substrate-binding domain superfamily;(source:Araport11)
AT3G62735.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: CCC);(source:Araport11, TAIR10)
AT3G11930.3	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G11940.2	protein_coding	ribosomal protein 5A	One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes.  Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant.	ribosomal protein 5A;(source:Araport11)
AT3G11960.2	protein_coding	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein		Cleavage and polyadenylation specificity factor (CPSF) A subunit protein;(source:Araport11)
AT3G44110.2	protein_coding	DNAJ homologue 3	homologous to the co-chaperon DNAJ protein from E coli	DNAJ homologue 3;(source:Araport11)
AT3G59415.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: TGT);(source:Araport11, TAIR10)
AT3G59350.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G59360.2	protein_coding	UDP-galactose transporter 6		UDP-galactose transporter 6;(source:Araport11)
AT3G51265.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT3G51135.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT3G11505.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: CGG);(source:Araport11, TAIR10)
AT3G11395.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: CAC);(source:Araport11, TAIR10)
AT3G11580.2	protein_coding	AP2/B3-like transcriptional factor family protein	SOD7 encodes nuclear localized B3 DNA binding domain and a transcriptional repression motif. Belongs to the RAV gene family. Functions in regulation of seed size and binds to and represses KLU. Transcription repressor involved in regulation of inflorescence architecture.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G11560.3	protein_coding	LETM1-like protein		LETM1-like protein;(source:Araport11)
AT3G11560.2	protein_coding	LETM1-like protein		LETM1-like protein;(source:Araport11)
AT3G11620.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G57160.1	protein_coding			cysteine-rich TM module stress tolerance protein;(source:Araport11)
AT3G57050.3	protein_coding	cystathionine beta-lyase	Encodes cystathionine beta-lyase, the second enzyme in the methionine biosynthetic pathway. Mutants show defects in root development, reduced methylation and maintenance of the quiescent center.	cystathionine beta-lyase;(source:Araport11)
AT3G57050.2	protein_coding	cystathionine beta-lyase	Encodes cystathionine beta-lyase, the second enzyme in the methionine biosynthetic pathway. Mutants show defects in root development, reduced methylation and maintenance of the quiescent center.	cystathionine beta-lyase;(source:Araport11)
AT3G59926.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT3G59923.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT3G59970.3	protein_coding	methylenetetrahydrofolate reductase 1	methylenetetrahydrofolate reductase MTHFR1 mRNA, complete	methylenetetrahydrofolate reductase 1;(source:Araport11)
AT3G59970.2	protein_coding	methylenetetrahydrofolate reductase 1	methylenetetrahydrofolate reductase MTHFR1 mRNA, complete	methylenetetrahydrofolate reductase 1;(source:Araport11)
AT3G59990.2	protein_coding	methionine aminopeptidase 2B	Encodes a MAP2 like methionine aminopeptidase	methionine aminopeptidase 2B;(source:Araport11)
AT3G59950.2	protein_coding	Peptidase family C54 protein		Peptidase family C54 protein;(source:Araport11)
AT3G59760.2	protein_coding	O-acetylserine (thiol) lyase isoform C	Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC. Required for pollen tube growth and/or fertilization.	O-acetylserine (thiol) lyase isoform C;(source:Araport11)
AT3G59760.3	protein_coding	O-acetylserine (thiol) lyase isoform C	Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC. Required for pollen tube growth and/or fertilization.	O-acetylserine (thiol) lyase isoform C;(source:Araport11)
AT3G52565.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAG);(source:Araport11, TAIR10)
AT3G52560.2	protein_coding	ubiquitin E2 variant 1D-4	MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions.  UEV1D-4, a predicted splice variant, can interact relatively weakly with UBC35/UBC13A and UBC36/UBC13B in a yeast-2-hybrid  UEV1D-4 can also significantly, but not totally, functionally complement an mms2 mutation in budding yeast by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays.	ubiquitin E2 variant 1D-4;(source:Araport11)
AT3G05525.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
AT3G05545.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G07550.2	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G07360.2	protein_coding	plant U-box 9	The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.	plant U-box 9;(source:Araport11)
AT3G07525.1	protein_coding	autophagocytosis-associated family protein	Encodes an E1 ligase involved in autophagic vesicle formation.	autophagocytosis-associated family protein;(source:Araport11)
AT3G07525.2	protein_coding	autophagocytosis-associated family protein	Encodes an E1 ligase involved in autophagic vesicle formation.	autophagocytosis-associated family protein;(source:Araport11)
AT3G61950.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	MYC-type transcription factor which interacts with ICE1 and negatively regulates cold-responsive genes and cold tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G61850.2	protein_coding	Dof-type zinc finger DNA-binding family protein	Zinc finger transcription factor of the Dof family involved in the control of seed germination.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT3G41979.1	ribosomal_rna	5.8SrRNA	5.8SrRNA	5.8SrRNA;(source:Araport11)
AT3G41768.1	ribosomal_rna	rRNA		rRNA;(source:Araport11)
AT3G03845.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT3G03852.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT3G03870.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G47550.3	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G47550.2	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G55795.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
AT3G55735.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
AT3G55760.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G55630.3	protein_coding	DHFS-FPGS homolog D	Encodes one of the three folylpolyglutamate synthetase isoforms (FPGSs): FPGS1 (At5g05980, plastidic), FPGS2 (At3g10160, mitochondrial) and FPGS3 (At3g55630, cytosolic).	DHFS-FPGS homolog D;(source:Araport11)
AT3G02090.2	protein_coding	Insulinase (Peptidase family M16) protein		Insulinase (Peptidase family M16) protein;(source:Araport11)
AT3G02200.2	protein_coding	Proteasome component (PCI) domain protein		Proteasome component (PCI) domain protein;(source:Araport11)
AT3G02150.2	protein_coding	plastid transcription factor 1	a chloroplast trans-acting factor of the psbD light-responsive promoter.TCP gene involved in heterochronic control of leaf differentiation.	plastid transcription factor 1;(source:Araport11)
AT3G01980.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G56085.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT3G05675.2	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT3G05710.2	protein_coding	syntaxin of plants 43	Encodes a member of SYP4 Gene Family that is a plant ortholog of the Tlg2/syntaxin16 Qa-SNARE.  Together with SYP42, it regulates the secretory and vacuolar transport pathways in the post-Golgi network and maintains the morphology of the Golgi apparatus and TGN and is required for extracellular resistance responses to a fungal pathogen.	syntaxin of plants 43;(source:Araport11)
AT3G50835.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: TAC);(source:Araport11, TAIR10)
AT3G50825.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT3G50895.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT3G50950.2	protein_coding	HOPZ-ACTIVATED RESISTANCE 1	Encodes a canonical CC-type NLR protein that is required for the recognition of the T3SE HopZ1a from the pathogenic bacteria P. syringae.	HOPZ-ACTIVATED RESISTANCE 1;(source:Araport11)
AT3G08720.2	protein_coding	serine/threonine protein kinase 2	Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl).  Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.	serine/threonine protein kinase 2;(source:Araport11)
AT3G08590.2	protein_coding	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent	Encodes a 2,3-biphosphoglycerate-independent phosphoglycerate mutase that is involved in pollen development and stomatal movement.	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent;(source:Araport11)
AT3G59090.2	protein_coding			tobamovirus multiplication protein;(source:Araport11)
AT3G59060.2	protein_coding	phytochrome interacting factor 3-like 6	Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.	phytochrome interacting factor 3-like 6;(source:Araport11)
AT3G07055.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met (anticodon: CAT);(source:Araport11, TAIR10)
AT3G06900.1	small_nuclear_rna	U4.2; snRNA		U4;(source:Araport11)
AT3G07025.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: TAC);(source:Araport11, TAIR10)
AT3G07020.2	protein_coding	UDP-Glycosyltransferase superfamily protein	encodes a 3beta-hydroxy sterol UDP-glucosyltransferase. ugt80a2 mutant plants have reduced steryl glycoside and acyl steryl glycoside levels and reduced seed size. ugt80a2/b1 double mutants have normal levels of celluose and normal cold stress tolerance.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G06930.2	protein_coding	protein arginine methyltransferase 4B	Encodes an type I protein arginine methyltransferase. PRMT4b can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.	protein arginine methyltransferase 4B;(source:Araport11)
AT3G07810.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G45955.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT3G45965.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT3G45935.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT3G22480.2	protein_coding	prefoldin 2		prefoldin 2;(source:Araport11)
AT3G02715.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT3G02460.2	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT3G02560.2	protein_coding	Ribosomal protein S7e family protein		Ribosomal protein S7e family protein;(source:Araport11)
AT3G61825.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: CTG);(source:Araport11, TAIR10)
AT3G61755.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: CGC);(source:Araport11, TAIR10)
AT3G61715.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT3G57645.1	small_nuclear_rna	U2.2; snRNA		U2-2;(source:Araport11)
AT3G57765.1	small_nuclear_rna	U2.3; snRNA	encodes a small nuclear RNA, which is a part of small nuclear ribonuclear particle (snRNP) and is involved in RNA processing such as splicing and polyadenylation.	U2-3;(source:Araport11)
AT3G02315.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT3G58640.2	protein_coding	Mitogen activated protein kinase kinase kinase-related		Mitogen activated protein kinase kinase kinase-like protein;(source:Araport11)
AT3G58450.2	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	USP domain containing protein, member of the universal stress protein family, regulated by ABA and possibly regulated by the ABA-dependent transcription factor AREB/ABF. Involved in the regulation of seed germination.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G10260.2	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G10260.3	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G10300.3	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G10300.2	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G23830.2	protein_coding	glycine-rich RNA-binding protein 4	encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.	glycine-rich RNA-binding protein 4;(source:Araport11)
AT3G44955.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
AT3G45050.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G45050.3	protein_coding			transmembrane protein;(source:Araport11)
AT3G10415.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT3G10572.1	protein_coding	3-phosphoinositide-dependent protein kinase-1, putative	APEM9 is required for both PTS1- and PTS2-dependent protein transport. APEM9 interacts with PEX6 in BiFC assay and mating-based Split ubiquitin system. BiFC data shows that APEM9 is required for peroxisomal localization of PEX1-PEX6 complex. These results indicate that APEM9 functions like mammalian PEX26 and yeast PEX15.	3-phosphoinositide-dependent protein kinase-1;(source:Araport11)
AT3G10490.2	protein_coding	NAC domain containing protein 52	Encodes a NAC transcription factor that physically associates with the histone H3K4 demethylase JMJ14 and through that association is involved in transcriptional repression and flowering time control.	NAC domain containing protein 52;(source:Araport11)
AT3G10420.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G47250.2	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G47250.3	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G02860.2	protein_coding	zinc ion binding	Encodes a C2H2 zinc finger protein that is localized to the nucleus and is translocated to the cytoplasm in response to ABA or oxidative stress.  It functions as a positive regulator countering ABA to break seed dormancy and maintain ROS homeostasis in response to ABA and oxidative stress.	zinc ion binding protein;(source:Araport11)
AT3G46585.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
AT3G09595.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
AT3G09585.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: CGA);(source:Araport11, TAIR10)
AT3G09505.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCG);(source:Araport11, TAIR10)
AT3G09470.2	protein_coding	Major facilitator superfamily protein	Protein similar to UNC93 of C.elegans. Mutants are hypersensitive to ABA treatment and salt sensitive and have disregulated K+ accumulation.	Major facilitator superfamily protein;(source:Araport11)
AT3G09770.2	protein_coding	RING/U-box superfamily protein	Encodes a ubiquitin E3 ligase LOG2 (LOSS OF GDU2). Required for GLUTAMINE DUMPER1(GDU1)-induced amino secretion.	RING/U-box superfamily protein;(source:Araport11)
AT3G11285.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: CCT);(source:Araport11, TAIR10)
AT3G11280.2	protein_coding	Duplicated homeodomain-like superfamily protein	Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT3G02335.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT3G02360.2	protein_coding	6-phosphogluconate dehydrogenase family protein		6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT3G05755.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: CGG);(source:Araport11, TAIR10)
AT3G05835.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: TAT);(source:Araport11, TAIR10)
AT3G05935.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G05840.2	protein_coding	Protein kinase superfamily protein	encodes a SHAGGY-like kinase involved in meristem organization.	Protein kinase superfamily protein;(source:Araport11)
AT3G51800.2	protein_coding	metallopeptidase M24 family protein	putative nuclear DNA-binding protein G2p (AtG2) mRNA,	metallopeptidase M24 family protein;(source:Araport11)
AT2G48070.2	protein_coding	resistance to phytophthora 1	Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1).  Involved in immune response to Phytophthora brassicae.  rph1 mutant plants (in Ws background) are susceptible to P. brassicae.	resistance to phytophthora 1;(source:Araport11)
AT2G48020.2	protein_coding	Major facilitator superfamily protein	Encodes a zinc transporter ZIF2. Expression of ZIF2 is regulated by alternative splicing.	Major facilitator superfamily protein;(source:Araport11)
AT2G26580.2	protein_coding	plant-specific transcription factor YABBY family protein		plant-specific transcription factor YABBY family protein;(source:Araport11)
AT2G26600.2	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT2G26500.2	protein_coding	cytochrome b6f complex subunit (petM), putative		cytochrome b6f complex subunit (petM);(source:Araport11)
AT2G29030.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
AT2G22670.2	protein_coding	indoleacetic acid-induced protein 8	Encodes a transcriptional repressor of the auxin response that is auxin inducible and is involved in lateral root formation. The mRNA is cell-to-cell mobile.	indoleacetic acid-induced protein 8;(source:Araport11)
AT2G30350.2	protein_coding	Excinuclease ABC, C subunit, N-terminal		Excinuclease ABC, C subunit, N-terminal;(source:Araport11)
AT2G38030.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT2G38040.2	protein_coding	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit	encodes the carboxyltransferase alpha subunit of acetyl-CoA carboxylase, involved in de novo fatty acid biosynthesis	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit;(source:Araport11)
AT2G37840.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G37860.2	protein_coding	Protein of unknown function (DUF3411)	Encodes a protein involved in differential development of bundle sheath and mesophyll cell chloroplasts.	reticulata-like protein, putative (DUF3411);(source:Araport11)
AT2G01735.1	protein_coding	RING-finger protein for embryogenesis	encodes a RING-H2 zinc finger protein essential for seed development.	RING-finger protein for embryogenesi;(source:Araport11)
AT2G02600.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT2G02570.2	protein_coding	nucleic acid binding;RNA binding		nucleic acid binding/RNA binding protein;(source:Araport11)
AT2G38880.3	protein_coding	nuclear factor Y, subunit B1	Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1.  Confers drought tolerance.	nuclear factor Y, subunit B1;(source:Araport11)
AT2G38880.2	protein_coding	nuclear factor Y, subunit B1	Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1.  Confers drought tolerance.	nuclear factor Y, subunit B1;(source:Araport11)
AT2G39000.2	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Encodes a chloroplast localized n-acetyltransfefase involved in  N-terminal protein amino acid acetylation.	Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G05990.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes enoyl-ACP reductase a component of the fatty acid synthase complex.  A reduced function mutation in this gene, mod1, was found in a screen for premature cell death mutants. Mutant plants have reduced lipid level and pleiotropic morphological defects, including chlorotic and abnormally shaped leaves. The mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G42020.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT2G09388.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G09589.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-32 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G09187.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.3e-226 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G08986.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07981.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G30450.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT2G30550.2	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G30600.2	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT2G14740.2	protein_coding	vaculolar sorting receptor 3	Encodes a vacuolar sorting receptor that participates in vacuolar sorting in vegetative tissues and in seeds. The mRNA is cell-to-cell mobile.	vaculolar sorting receptor 3;(source:Araport11)
AT2G14720.2	protein_coding	vacuolar sorting receptor 4	encodes a vacuolar sorting receptor	vacuolar sorting receptor 4;(source:Araport11)
AT2G38610.2	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT2G07743.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT2G07742.1	pre_trna	pre-tRNA		tRNA-Ile (anticodon: AAT)
AT2G39860.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT2G39730.3	protein_coding	rubisco activase	Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco. Involved in jasmonate-induced leaf senescence.	rubisco activase;(source:Araport11)
AT2G07762.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT2G07758.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
AT2G07756.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT2G07765.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT2G07761.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT2G07763.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT2G07764.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT2G07757.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GGA);(source:Araport11, TAIR10)
AT2G07759.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT2G07766.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
AT2G03490.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: TGC);(source:Araport11, TAIR10)
AT2G35220.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met (anticodon: CAT);(source:Araport11, TAIR10)
AT2G35215.1	protein_coding			plant/protein;(source:Araport11)
AT2G05647.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42680.1);(source:TAIR10)
AT2G05642.1	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G41100.2	protein_coding	Calcium-binding EF hand family protein	encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers. The mRNA is cell-to-cell mobile.	Calcium-binding EF hand family protein;(source:Araport11)
AT2G41150.2	protein_coding			plant/protein;(source:Araport11)
AT2G40400.2	protein_coding	Protein of unknown function (DUF399 and DUF3411)	Encodes a chloroplast localized protein of unknown function that is involved in regulation of chloroplast development.	DUF399 family protein, putative (DUF399 and DUF3411);(source:Araport11)
AT2G46120.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT2G46320.2	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT2G46060.2	protein_coding	transmembrane protein-related		transmembrane protein-like protein;(source:Araport11)
AT2G46270.2	protein_coding	G-box binding factor 3	encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3¡¯s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2.	G-box binding factor 3;(source:Araport11)
AT2G46280.2	protein_coding	TGF-beta receptor interacting protein 1	Encodes a homolog of mammalian TGF-beta receptor interacting protein.  Co-immunoprecipitates with BRI1 and can be phosphorylated in vitro by BRI1 at specific sites (Thr-14, Thr-89, and either Thr-197 or Ser-198).  May therefore be a cytoplasmic BRI1 substrate and involved in brassinosteroid regulated plant growth and development.The encoded protein has two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	TGF-beta receptor interacting protein 1;(source:Araport11)
AT2G46130.2	protein_coding	WRKY DNA-binding protein 43	member of WRKY Transcription Factor; Group II-c	WRKY DNA-binding protein 43;(source:Araport11)
AT2G28290.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral  homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates  flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation.  Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms  differs in juvenile and in adult tissues. The C-terminal domain is not required for activity. The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G28310.2	protein_coding	Protein of unknown function (DUF707)		trimethylguanosine synthase (DUF707);(source:Araport11)
AT2G41540.2	protein_coding	6-phosphogluconate dehydrogenase family protein	Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene.	6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT2G35387.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G35384.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G35382.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G35520.2	protein_coding	Defender against death (DAD family) protein		Defender against death (DAD family) protein;(source:Araport11)
AT2G35550.2	protein_coding	basic pentacysteine 7		basic pentacysteine 7;(source:Araport11)
AT2G35390.2	protein_coding	Phosphoribosyltransferase family protein		Phosphoribosyltransferase family protein;(source:Araport11)
AT2G18310.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT2G18240.2	protein_coding	Rer1 family protein		Rer1 family protein;(source:Araport11)
AT2G18300.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G47640.2	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT2G40640.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G20110.2	protein_coding	Tesmin/TSO1-like CXC domain-containing protein		Tesmin/TSO1-like CXC domain-containing protein;(source:Araport11)
AT2G20180.2	protein_coding	phytochrome interacting factor 3-like 5	Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark.  It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls.  Light reduces this activity in a phy-dependent manner.  The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis.  It also negatively regulates GA3 oxidase expression.	phytochrome interacting factor 3-like 5;(source:Araport11)
AT2G31370.3	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G31370.2	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G31350.2	protein_coding	glyoxalase 2-5	Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II).	glyoxalase 2-5;(source:Araport11)
AT2G24380.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: ACG);(source:Araport11, TAIR10)
AT2G24430.2	protein_coding	NAC domain containing protein 38		NAC domain containing protein 38;(source:Araport11)
AT2G24420.2	protein_coding	DNA repair ATPase-related		DNA repair ATPase-like protein;(source:Araport11)
AT2G18050.2	protein_coding	histone H1-3	encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. The mRNA is cell-to-cell mobile.	histone H1-3;(source:Araport11)
AT2G30190.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT2G30180.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT2G29650.2	protein_coding	phosphate transporter 4;1	Encodes an inorganic phosphate transporter that  is localized to the thylakoid membrane.	phosphate transporter 4;(source:Araport11)
AT2G29630.2	protein_coding	thiaminC	Encodes a protein involved in thiamin biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine (HMP) or  hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. A conserved TPP-binding site is located in the 3' UTR of the At2g29630.2 gene model, and is predicted to function as a riboswitch. The riboswitch controls the  formation of transcripts with alternative 3' UTR lengths, which affect mRNA accumulation and protein production. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene.  Recessive mutant isolated by Redei. Leaves but not cotyledons white, lethal; restored to normal by thiamine or 2,5-dimethyl-4-aminopyrimidine.	thiaminC;(source:Araport11)
AT2G29680.2	protein_coding	cell division control 6	Encodes cell division control protein 6 (CDC6).	cell division control 6;(source:Araport11)
AT2G22220.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT2G22280.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: ACG);(source:Araport11, TAIR10)
AT2G22250.2	protein_coding	aspartate aminotransferase	Encodes a prokaryotic-type plastidic aspartate aminotransferase with glutamate/aspartate-prephenate aminotransferase (PAT) activity.	aspartate aminotransferase;(source:Araport11)
AT2G05765.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G04270.3	protein_coding	RNAse E/G-like	Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.	RNAse E/G-like protein;(source:Araport11)
AT2G04270.2	protein_coding	RNAse E/G-like	Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.	RNAse E/G-like protein;(source:Araport11)
AT2G04270.4	protein_coding	RNAse E/G-like	Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.	RNAse E/G-like protein;(source:Araport11)
AT2G04350.2	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT2G01830.2	protein_coding	CHASE domain containing histidine kinase protein	Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane	CHASE domain containing histidine kinase protein;(source:Araport11)
AT2G25400.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCT);(source:Araport11, TAIR10)
AT2G26980.3	protein_coding	CBL-interacting protein kinase 3	encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.	CBL-interacting protein kinase 3;(source:Araport11)
AT2G26980.4	protein_coding	CBL-interacting protein kinase 3	encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.	CBL-interacting protein kinase 3;(source:Araport11)
AT2G27110.2	protein_coding	FAR1-related sequence 3		FAR1-related sequence 3;(source:Araport11)
AT2G27030.3	protein_coding	calmodulin 5	encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. The mRNA is cell-to-cell mobile.	calmodulin 5;(source:Araport11)
AT2G22990.3	protein_coding	sinapoylglucose 1	sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.	sinapoylglucose 1;(source:Araport11)
AT2G22990.2	protein_coding	sinapoylglucose 1	sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.	sinapoylglucose 1;(source:Araport11)
AT2G22990.4	protein_coding	sinapoylglucose 1	sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.	sinapoylglucose 1;(source:Araport11)
AT2G22920.2	protein_coding	serine carboxypeptidase-like 12		serine carboxypeptidase-like 12;(source:Araport11)
AT2G05590.2	protein_coding	TLD-domain containing nucleolar protein		TLD-domain containing nucleolar protein;(source:Araport11)
AT2G05440.2	protein_coding	GLYCINE RICH PROTEIN 9		GLYCINE RICH PROTEIN 9;(source:Araport11)
AT2G02710.2	protein_coding	PAS/LOV protein B	Encodes a putative blue light receptor protein.	PAS/LOV protein B;(source:Araport11)
AT2G35747.1	small_nucleolar_rna	snoRNA	HID1 is a 236-nt ncRNA that is ubiquitously expressed in plants.Mediates  transcriptional control of PIF3 under continuous red light.	snoRNA;(source:Araport11)
AT2G35742.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G35744.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G23310.2	protein_coding	Rer1 family protein	Encodes AtRER1C1, a Golgi membrane protein involved in returning the molecules that are exported from the endoplasmic reticulum (ER) to the Golgi apparatus back to the ER (a mechanism known as retrieval).  There are two Arabidopsis homologues of AtRERC1: AtRER1A and AtRER1B.	Rer1 family protein;(source:Araport11)
AT2G40935.2	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT2G36860.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT2G36895.1	protein_coding			D-tagatose-1,6-bisphosphate aldolase subunit;(source:Araport11)
AT2G36960.2	protein_coding	TSL-kinase interacting protein 1	Arabidopsis thaliana myb/SANT domain protein	TSL-kinase interacting protein 1;(source:Araport11)
AT2G33950.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: CGG);(source:Araport11, TAIR10)
AT2G33930.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT2G33940.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT2G33910.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT2G33920.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT2G33890.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT2G33900.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT2G33960.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT2G33970.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT2G33740.2	protein_coding	Nitrogen regulatory PII-like, alpha/beta	encodes a copper binding protein that forms tetramers in vitro. Gene is expressed in all tissues examined and protein is localized to the chloroplast. The mRNA is cell-to-cell mobile.	Nitrogen regulatory PII-like, alpha/beta;(source:Araport11)
AT2G26090.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: AAG);(source:Araport11, TAIR10)
AT2G26170.2	protein_coding	cytochrome P450, family 711, subfamily A, polypeptide 1	Encodes a protein with similarity to thromboxane-A synthase, member of the CYP711A cytochrome P450 family. MAX1 is a specific repressor of vegetative axillary buds generated by the axillary meristem. Expressed in vascular traces in the rosette stem and axillary buds throughout plant development. Mutants have increased axillary branches. Along with MAX3,4 thought to mediate control of shoot branching via synthesis of a signal molecule which is transported over long distance mediated by MAX2. cDNA supports the existence of the longer transcript predicted for this locus, no cDNA isolated for shorter transcript. MAX1 downregulates 11 genes involved in flavonoid pathway (CHS, CHI, F3H, F3'H, FLS, DFR, ANS, UFGT, RT, AAC and GST).	cytochrome P450, family 711, subfamily A, polypeptide 1;(source:Araport11)
AT2G03870.2	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT2G02900.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT2G02960.2	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G07752.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
AT2G07753.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT2G07755.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
AT2G07745.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT2G07748.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT2G07746.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: TTG);(source:Araport11, TAIR10)
AT2G07754.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT2G05810.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT2G17810.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT2G17695.1	protein_coding			outer envelope protein;(source:Araport11)
AT2G02390.2	protein_coding	glutathione S-transferase zeta 1	Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the  oxidant tert-butylhydroperoxide.  It functions in vitro as a maleylacetoacetate isomerase and is likely to be involved in tyrosine catabolism.	glutathione S-transferase zeta 1;(source:Araport11)
AT2G02450.1	protein_coding	NAC domain containing protein 35		NAC domain containing protein 35;(source:Araport11)
AT2G02450.2	protein_coding	NAC domain containing protein 35		NAC domain containing protein 35;(source:Araport11)
AT2G22110.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: CAC);(source:Araport11, TAIR10)
AT2G22090.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G15000.2	protein_coding			caspase-6 protein;(source:Araport11)
AT2G15080.2	protein_coding	receptor like protein 19		receptor like protein 19;(source:Araport11)
AT2G45020.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCT);(source:Araport11, TAIR10)
AT2G45135.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G45170.2	protein_coding	AUTOPHAGY 8E	Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.	AUTOPHAGY 8E;(source:Araport11)
AT2G34040.2	protein_coding	Apoptosis inhibitory protein 5 (API5)		Apoptosis inhibitory protein 5 (API5);(source:Araport11)
AT2G07340.2	protein_coding	PREFOLDIN 1		PREFOLDIN 1;(source:Araport11)
AT2G20465.1	protein_coding	Molecular chaperone Hsp40/DnaJ family protein	Encodes a defensin-like (DEFL) family protein.	Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT2G28730.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT2G41710.2	protein_coding	Integrase-type DNA-binding superfamily protein		Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G41720.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a pentatricopeptide repeat protein that is essential for trans-splicing of a chloroplast small ribosomal subunit transcript.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G13680.1	protein_coding	callose synthase 5	Responsible for the synthesis of callose deposited at the primary cell wall of meiocytes, tetrads and microspores. Required for exine formation during microgametogenesis and for pollen viability. Highest expression in meiocytes, tetrads, microspores and mature pollen.	callose synthase 5;(source:Araport11)
AT2G13650.2	protein_coding	golgi nucleotide sugar transporter 1	Encodes a Golgi-localized GDP-mannose transporter.  It can transport ADP-glucose in vitro.	golgi nucleotide sugar transporter 1;(source:Araport11)
AT2G17500.2	protein_coding	Auxin efflux carrier family protein		Auxin efflux carrier family protein;(source:Araport11)
AT2G42420.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT2G42380.2	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G43070.1	protein_coding	SIGNAL PEPTIDE PEPTIDASE-LIKE 3		SIGNAL PEPTIDE PEPTIDASE-LIKE 3;(source:Araport11)
AT2G43010.2	protein_coding	phytochrome interacting factor 4	Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized  bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.Involved in the regulation of response to nutrient levels.	phytochrome interacting factor 4;(source:Araport11)
AT2G15590.2	protein_coding	Protein of unknown function (DUF1685)		spire, putative (DUF1685);(source:Araport11)
AT2G36140.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT2G36150.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAG);(source:Araport11, TAIR10)
AT2G14045.2	protein_coding			c-Myc-binding protein;(source:Araport11)
AT2G28770.1	pre_trna	pre-tRNA		pre-tRNA tRNA-His (anticodon: GTG);(source:Araport11, TAIR10)
AT2G28800.2	protein_coding	63 kDa inner membrane family protein	member of Chloroplast membrane protein ALBINO3 family. Similar to pea PPF1 and may play a role in plant senescence.	63 kDa inner membrane family protein;(source:Araport11)
AT2G18196.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT2G18193.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G21240.2	protein_coding	basic pentacysteine 4	Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.	basic pentacysteine 4;(source:Araport11)
AT2G16070.2	protein_coding	plastid division2	An integral outer envelope membrane protein (its homolog in A thaliana PDV1), component of the plastid division machinery. Similar to ARC6, PDV2 localizes to a continuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site.	plastid division2;(source:Araport11)
AT2G30850.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT2G21760.1	pre_trna	pre-tRNA		tRNA-Leu (anticodon: GAG)
AT2G21870.2	protein_coding	copper ion binding;cobalt ion binding;zinc ion binding	Encodes the FAd subunit of mitochondrial F1F0-ATP synthase.  Essential for pollen formation.	MALE GAMETOPHYTE DEFECTIVE 1;(source:Araport11)
AT2G42885.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G42830.2	protein_coding	K-box region and MADS-box transcription factor family protein 	AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT2G17033.2	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT2G17130.2	protein_coding	isocitrate dehydrogenase subunit 2	Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.	isocitrate dehydrogenase subunit 2;(source:Araport11)
AT2G29910.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT2G19940.2	protein_coding	oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding		Putative N-acetyl-gamma-glutamyl-phosphate reductase;(source:Araport11)
AT2G43970.2	protein_coding	RNA-binding protein		RNA-binding protein;(source:Araport11)
AT2G44060.2	protein_coding	Late embryogenesis abundant protein, group 2		Late embryogenesis abundant protein, group 2;(source:Araport11)
AT2G43950.2	protein_coding	chloroplast outer envelope protein 37	Constitutes a peptide sensitive ion  channel in chloroplast outer membranes. Accumulates in germinating  seeds and developing embryos.	chloroplast outer envelope protein 37;(source:Araport11)
AT2G43945.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G17295.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G20723.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G20721.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G20722.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G20900.2	protein_coding	diacylglycerol kinase 5		diacylglycerol kinase 5;(source:Araport11)
AT2G33650.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT2G33660.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT2G33340.2	protein_coding	MOS4-associated  complex 3B	Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19.  Associated with the MOS4-Associated Complex (MAC).  Involved in plant innate immunity.	MOS4-associated complex 3B;(source:Araport11)
AT2G33620.2	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT2G33310.2	protein_coding	auxin-induced protein 13	Auxin induced gene, IAA13 (IAA13).	auxin-induced protein 13;(source:Araport11)
AT2G33435.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G45390.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT2G45990.2	protein_coding			ribosomal RNA small subunit methyltransferase G;(source:Araport11)
AT2G45850.2	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT2G44320.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT2G44350.2	protein_coding	Citrate synthase family protein	encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA.	Citrate synthase family protein;(source:Araport11)
AT2G44260.2	protein_coding	Plant protein of unknown function (DUF946)		DUF946 family protein (DUF946);(source:Araport11)
AT2G19640.2	protein_coding	ASH1-related protein 2		ASH1-related protein 2;(source:Araport11)
AT2G25670.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G25710.2	protein_coding	holocarboxylase synthase 1	Encodes a dual-targeted biotin holocarboxylase synthetase that can localize to the chloroplast and the cytosol. In vitro, it has been shown to catalyze the addition of biotin to the BCCP subunit of acetyl-CoA carboxylase and it can also biotinylate methylcrotonyl-CoA carboxylase. A small upstream ORF in the 5'UTR (uORF24) regulates the differential targeting of this enzyme.	holocarboxylase synthase 1;(source:Araport11)
AT2G04039.2	protein_coding		NdhV is loosely associated with the NDH complex and is required for stabilizing NDH subcomplexes A and E.	DUF2996 family protein;(source:Araport11)
AT2G21360.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: CGG);(source:Araport11, TAIR10)
AT2G21500.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G04030.2	protein_coding	Chaperone protein htpG family protein	Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response and crucial for protein import into the chloroplast stroma. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR.	Chaperone protein htpG family protein;(source:Araport11)
AT2G36280.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT2G21700.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: CTG);(source:Araport11, TAIR10)
AT2G21570.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT2G21670.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: AAG);(source:Araport11, TAIR10)
AT2G21660.2	protein_coding	cold, circadian rhythm, and rna binding 2	Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript.  Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway.   There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus.  A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	cold, circadian rhythm, and rna binding 2;(source:Araport11)
AT2G04780.2	protein_coding	FASCICLIN-like arabinoogalactan 7	fasciclin-like arabinogalactan-protein 7 (Fla7). Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinoogalactan 7;(source:Araport11)
AT2G04880.2	protein_coding	zinc-dependent activator protein-1	Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes.  WRKY1 is involved in the salicylic acid signaling pathway.  The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1. The mRNA is cell-to-cell mobile.	zinc-dependent activator protein-1;(source:Araport11)
AT2G23760.2	protein_coding	BEL1-like homeodomain 4	Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw2 and saw1 may act redundantly to repress BP in leaves.	BEL1-like homeodomain 4;(source:Araport11)
AT2G19340.2	protein_coding	Oligosaccharyltransferase complex/magnesium transporter family protein		Oligosaccharyltransferase complex/magnesium transporter family protein;(source:Araport11)
AT2G25030.1	pseudogene			pseudogene of casein lytic proteinase B4;(source:Araport11)
AT2G23650.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
AT2G23450.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G23550.2	protein_coding	methyl esterase 6	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.	methyl esterase 6;(source:Araport11)
AT2G24600.2	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT2G33140.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met (anticodon: CAT);(source:Araport11, TAIR10)
AT2G32850.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G32700.3	protein_coding	LEUNIG_homolog	Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. Involved in cell wall modifications necessary for mucilage extrusion and mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification.	LEUNIG-like protein;(source:Araport11)
AT2G32700.2	protein_coding	LEUNIG_homolog	Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. Involved in cell wall modifications necessary for mucilage extrusion and mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification.	LEUNIG-like protein;(source:Araport11)
AT2G32700.5	protein_coding	LEUNIG_homolog	Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. Involved in cell wall modifications necessary for mucilage extrusion and mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification.	LEUNIG-like protein;(source:Araport11)
AT2G32700.4	protein_coding	LEUNIG_homolog	Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. Involved in cell wall modifications necessary for mucilage extrusion and mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification.	LEUNIG-like protein;(source:Araport11)
AT2G32770.2	protein_coding	purple acid phosphatase 13		purple acid phosphatase 13;(source:Araport11)
AT2G20585.2	protein_coding	nuclear fusion defective 6		nuclear fusion defective 6;(source:Araport11)
AT2G11910.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G11890.1	protein_coding	adenylate cyclases	Encodes a tripolyphosphatase that is involved in root development.	adenylate cyclase;(source:Araport11)
AT2G01020.1	ribosomal_rna	5.8SrRNA	5.8SrRNA	5.8SrRNA;(source:Araport11)
AT2G01010.1	ribosomal_rna	rRNA		rRNA;(source:Araport11)
AT2G01100.2	protein_coding			FAM133-like protein;(source:Araport11)
AT2G29980.2	protein_coding	fatty acid desaturase 3	Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor.	fatty acid desaturase 3;(source:Araport11)
AT2G42970.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: ACG);(source:Araport11, TAIR10)
AT2G32110.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT2G32160.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G32080.2	protein_coding	purin-rich alpha 1	similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication	purin-rich alpha 1;(source:Araport11)
AT2G32120.2	protein_coding	heat-shock protein 70T-2		heat-shock protein 70T-2;(source:Araport11)
AT2G23020.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
AT2G23093.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G23096.1	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Encodes a prolyl 4-hydroxylase that modifies the extensin proteins in root hair cells.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G31810.3	protein_coding	ACT domain-containing small subunit of acetolactate synthase protein		ACT domain-containing small subunit of acetolactate synthase protein;(source:Araport11)
AT2G31810.2	protein_coding	ACT domain-containing small subunit of acetolactate synthase protein		ACT domain-containing small subunit of acetolactate synthase protein;(source:Araport11)
AT2G36520.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAA);(source:Araport11, TAIR10)
AT2G36600.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCT);(source:Araport11, TAIR10)
AT2G36510.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAA);(source:Araport11, TAIR10)
AT2G36410.2	protein_coding	Family of unknown function (DUF662) 		transcriptional activator (DUF662);(source:Araport11)
AT2G34950.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: AGT);(source:Araport11, TAIR10)
AT2G34985.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: CGT);(source:Araport11, TAIR10)
AT2G15950.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT2G18915.2	protein_coding	LOV KELCH protein 2	encodes a member of F-box proteins that includes two other proteins in Arabidopsis (ZTL and FKF1). These proteins contain a unique structure containing a PAS domain at their N-terminus, an F-box motif, and 6 kelch repeats at their C-terminus. Overexpression results in arrhythmic phenotypes for a number of circadian clock outputs in both constant light and constant darkness, long hypocotyls under multiple fluences of both red and blue light, and a loss of photoperiodic control of flowering time. Although this the expression of this gene itself is not regulated by circadian clock, it physically interacts with Dof transcription factors that are transcriptionally regulated by circadian rhythm. LKP2 interacts with Di19, CO/COL family proteins.	LOV KELCH protein 2;(source:Araport11)
AT2G18876.1	protein_coding	Afadin/alpha-actinin-binding protein	Encodes a microtubule-associated protein.	Afadin/alpha-actinin-binding protein;(source:Araport11)
AT2G18876.2	protein_coding	Afadin/alpha-actinin-binding protein	Encodes a microtubule-associated protein.	Afadin/alpha-actinin-binding protein;(source:Araport11)
AT2G03700.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: CGT);(source:Araport11, TAIR10)
AT2G03660.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: CGT);(source:Araport11, TAIR10)
AT2G03790.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: TAC);(source:Araport11, TAIR10)
AT2G03710.2	protein_coding	K-box region and MADS-box transcription factor family protein 	This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT2G43710.2	protein_coding	Plant stearoyl-acyl-carrier-protein desaturase family protein	Encodes a stearoyl-ACP desaturase, involved in fatty acid desaturation. The ssi2 mutants have increased 18:0 and reduced 18:1 fatty acids. Exogenous application of glycerol to wild type plants mimics the ssi2 mutant phenotype. The altered 18:1 fatty acid content in the ssi2 mutants has an impact on SA- and JA-mediated defense signaling. ssi2 mutants resulted in hyper-resistance to green peach aphid and antibiosis activity in petiole exudates.	Plant stearoyl-acyl-carrier-protein desaturase family protein;(source:Araport11)
AT2G26770.2	protein_coding	plectin-related	Encodes a plant-specific actin binding protein SCAB1 (STOMATAL CLOSURE-RELATED ACTIN BINDING PROTEIN1).  SCAB1 stabilizes actin filaments and regulates stomatal movement.	plectin-like protein;(source:Araport11)
AT2G25850.2	protein_coding	poly(A) polymerase 2	Encodes a poly(A) polymerase. Located in the nucleus.	poly(A) polymerase 2;(source:Araport11)
AT2G47740.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: CCC);(source:Araport11, TAIR10)
AT2G47830.2	protein_coding	Cation efflux family protein		Cation efflux family protein;(source:Araport11)
AT2G39670.2	protein_coding	Radical SAM superfamily protein		Radical SAM superfamily protein;(source:Araport11)
AT2G29520.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: TAC);(source:Araport11, TAIR10)
AT2G29390.2	protein_coding	sterol 4-alpha-methyl-oxidase 2-2	Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.	sterol 4-alpha-methyl-oxidase 2-2;(source:Araport11)
AT2G29340.2	protein_coding	NAD-dependent epimerase/dehydratase family protein		NAD-dependent epimerase/dehydratase family protein;(source:Araport11)
AT2G38280.2	protein_coding	AMP deaminase, putative / myoadenylate deaminase, putative	Encodes a protein with in vitro AMP deaminase activity that is involved in embryogenesis. Homozygous mutant embryos fail to develop past the zygote stage.	AMP deaminase, putative / myoadenylate deaminase;(source:Araport11)
AT2G38170.2	protein_coding	cation exchanger 1	Encodes a high affinity vacuolar calcium antiporter.  The residue His 338 is critical to Ca2+ transport activity. Disruption of CAX1 reduces manganese and zinc of shoot tissue and results in a decrease in the activity of vacuolar V-type proton ATPase.	cation exchanger 1;(source:Araport11)
AT2G16240.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: CTG);(source:Araport11, TAIR10)
AT2G16430.2	protein_coding	purple acid phosphatase 10		purple acid phosphatase 10;(source:Araport11)
AT2G44680.2	protein_coding	casein kinase II  beta subunit 4	Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.	casein kinase II beta subunit 4;(source:Araport11)
AT2G44820.2	protein_coding			axoneme-associated protein MST101(2) protein;(source:Araport11)
AT2G44590.3	protein_coding	DYNAMIN-like 1D		DYNAMIN-like 1D;(source:Araport11)
AT2G44590.2	protein_coding	DYNAMIN-like 1D		DYNAMIN-like 1D;(source:Araport11)
AT2G44750.2	protein_coding	thiamin pyrophosphokinase 2	Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.	thiamin pyrophosphokinase 2;(source:Araport11)
AT2G27850.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
AT2G27775.2	protein_coding			PPR containing protein;(source:Araport11)
AT2G27710.2	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT2G27840.2	protein_coding	histone deacetylase-related / HD-related	Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39	histone deacetylase-related / HD-like protein;(source:Araport11)
AT2G10940.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G13360.2	protein_coding	alanine:glyoxylate aminotransferase	Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration.	alanine:glyoxylate aminotransferase;(source:Araport11)
AT2G42540.2	protein_coding	cold-regulated 15a	A cold-regulated gene whose product is targeted to the chloroplast. Cor15am  protects stromal proteins from aggregation under various stress conditions. Constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.  Late Embryogenesis abundant protein (LEA). Protects chloroplast membranes during freezing.	cold-regulated 15a;(source:Araport11)
AT2G42600.2	protein_coding	phosphoenolpyruvate carboxylase 2	Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.PPC1 and PPC2 are crucial for balancing carbon and nitrogen metabolism.	phosphoenolpyruvate carboxylase 2;(source:Araport11)
AT2G42610.2	protein_coding	Protein of unknown function (DUF640)		LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
AT2G47100.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: TGC);(source:Araport11, TAIR10)
AT2G46920.2	protein_coding	Protein phosphatase 2C family protein	Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal.  Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.	Protein phosphatase 2C family protein;(source:Araport11)
AT2G46960.2	protein_coding	cytochrome P450, family 709, subfamily B, polypeptide 1	member of CYP709B	cytochrome P450, family 709, subfamily B, polypeptide 1;(source:Araport11)
AT2G47060.2	protein_coding	Protein kinase superfamily protein	Encodes Pto-interacting 1-4 (PTI1-4), a member of the PTI1-like serine/threonine protein kinases that share strong sequence identity to the tomato PTI1 kinase.	Protein kinase superfamily protein;(source:Araport11)
AT2G46980.2	protein_coding		Encodes ASY3, a coiled-coil domain protein that is required for normal meiosis.	asynaptic protein;(source:Araport11)
AT2G22380.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT2G22580.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: CGC);(source:Araport11, TAIR10)
AT2G43139.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G43141.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G43137.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G43138.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT2G43300.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: TGT);(source:Araport11, TAIR10)
AT2G43210.2	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT2G43190.2	protein_coding	ribonuclease P family protein	Encodes a protein involved in rRNA but not tRNA maturation.	ribonuclease P family protein;(source:Araport11)
AT2G43110.1	protein_coding			U3 containing 90S pre-ribosomal complex subunit;(source:Araport11)
AT2G43180.2	protein_coding	Phosphoenolpyruvate carboxylase family protein		Phosphoenolpyruvate carboxylase family protein;(source:Araport11)
AT2G43160.2	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT2G34355.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G34310.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G34310.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G36680.2	protein_coding	Modifier of rudimentary (Mod(r)) protein		Modifier of rudimentary (Mod(r)) protein;(source:Araport11)
AT2G38810.3	protein_coding	histone H2A 8	Encodes HTA8, a histone H2A protein. Loss of all H2A.Z (triple mutant with HTA9 and HTA11) results in a reduction in DNA methylation of transposons but not that of genes.  Loss of H2A.Z causes misregulation of many genes involved in the response to developmental and environmental cues, and that these genes tend to have high levels of gene-body H2A.Z.	histone H2A 8;(source:Araport11)
AT2G38810.2	protein_coding	histone H2A 8	Encodes HTA8, a histone H2A protein. Loss of all H2A.Z (triple mutant with HTA9 and HTA11) results in a reduction in DNA methylation of transposons but not that of genes.  Loss of H2A.Z causes misregulation of many genes involved in the response to developmental and environmental cues, and that these genes tend to have high levels of gene-body H2A.Z.	histone H2A 8;(source:Araport11)
AT2G41240.2	protein_coding	basic helix-loop-helix protein 100	Encodes a member of the basic helix-loop-helix transcription factor family protein. Functions as a key regulator of iron-deficiency responses independent of the master regulator FIT. Likely regulates genes involved in the distribution of iron within the plant.	basic helix-loop-helix protein 100;(source:Araport11)
AT2G39600.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT2G39610.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT2G39630.2	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Encodes a putative dolichyl-phosphate &#946;-glucosyltransferase.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT2G27350.2	protein_coding	OTU-like cysteine protease family protein	Encodes an otubain-like histone deubiquitinase involved in chromatin modification and regulation of plant gene expression.	OTU-like cysteine protease family protein;(source:Araport11)
AT2G26800.2	protein_coding	Aldolase superfamily protein	Mutant has increased seed ile, leu and val as well as his and arg.	Aldolase superfamily protein;(source:Araport11)
AT2G26800.3	protein_coding	Aldolase superfamily protein	Mutant has increased seed ile, leu and val as well as his and arg.	Aldolase superfamily protein;(source:Araport11)
AT2G16930.2	protein_coding	Ribosomal protein L27 family protein		Ribosomal protein L27 family protein;(source:Araport11)
AT2G36060.2	protein_coding	MMS ZWEI homologue 3	MMZ3/UEV1C encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1C can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ3/UEV1C transcripts are found at moderate levels in most plant organs, but cannot be detected in the pollen or 2 days after germination. Transcript levels do not appear to be stress-inducible.	MMS ZWEI homologue 3;(source:Araport11)
AT2G35940.2	protein_coding	BEL1-like homeodomain 1	Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles.  Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.	BEL1-like homeodomain 1;(source:Araport11)
AT2G36080.2	protein_coding	AP2/B3-like transcriptional factor family protein	Encodes a plant-specific B3 DNA-binding domain transcription factor.  Has transcription repressor activity.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT2G46370.2	protein_coding	Auxin-responsive GH3 family protein	Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.	Auxin-responsive GH3 family protein;(source:Araport11)
AT2G01160.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT2G01320.3	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT2G01320.2	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT2G01420.2	protein_coding	Auxin efflux carrier family protein	Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems.  It is involved in the maintenance of embryonic auxin gradients.  A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).	Auxin efflux carrier family protein;(source:Araport11)
AT2G01220.2	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT2G27560.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT2G27530.2	protein_coding	Ribosomal protein L1p/L10e family	Encodes ribosomal protein L10aP. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.	Ribosomal protein L1p/L10e family;(source:Araport11)
AT2G27490.2	protein_coding	dephospho-CoA kinase family	AT2G27490 encodes dephospho-CoA kinase. The molecular function was shown to phosphorylate the ribosyl moiety forming CoA.	dephospho-CoA kinase family;(source:Araport11)
AT2G27450.2	protein_coding	nitrilase-like protein 1	Encodes N-carbamoylputrescine amidohydrolase that is involved in putrescine and polyamine biosynthesis.	nitrilase-like protein 1;(source:Araport11)
AT1G79290.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT1G79300.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT1G79240.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: CCG);(source:Araport11, TAIR10)
AT1G79090.2	protein_coding		Encodes a component of the mRNA decapping machinery that is found in complexes with and is phosphorylated by MPK4.  The protein can be found in P-bodies after treatment with PAMPs. Pat1 mutants exhibit dwarfism and de-repressed immunity dependent on the immune receptor SUMM2.  The pat1 constitutive defense phenotype is suppressed by summ2 such that pat1 summ2 mutants display a wild-type phenotype in response to biotrophic and necrotrophic pathogens.	topoisomerase II-associated protein;(source:Araport11)
AT1G78970.2	protein_coding	lupeol synthase 1	Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17&#946;-dammarenyl cation.	lupeol synthase 1;(source:Araport11)
AT1G05135.1	pseudogene		Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in   PMID:27791167.	pseudogene of expressed protein;(source:Araport11)
AT1G05230.2	protein_coding	homeodomain GLABROUS 2	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes.  The mutations do not affect trichome growth or branch number.	homeodomain GLABROUS 2;(source:Araport11)
AT1G72320.2	protein_coding	pumilio 23	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 23;(source:Araport11)
AT1G73470.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G35340.2	protein_coding	ATP-dependent protease La (LON) domain protein		ATP-dependent protease La (LON) domain protein;(source:Araport11)
AT1G32540.2	protein_coding	lsd one like 1	Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.	lsd one like 1;(source:Araport11)
AT1G57710.1	pre_trna	pre-tRNA		tRNA-Undet (anticodon: ???)
AT1G79500.2	protein_coding	Aldolase-type TIM barrel family protein	Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT1G79550.2	protein_coding	phosphoglycerate kinase	Encodes cytosolic phosphoglycerate kinase (PGK3). Expression studies in PGK mutants showed that PGK1 and PGK3 were down-regulated in pgk3.2 and pgk1.1, respectively. These results indicate that the down-regulation of photosynthetic activity could be a plant strategy when glycolysis is impaired to achieve metabolic adjustment and optimize growth.	phosphoglycerate kinase;(source:Araport11)
AT1G79430.2	protein_coding	Homeodomain-like superfamily protein	Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene.  Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G65270.2	protein_coding			ER membrane protein complex subunit-like protein;(source:Araport11)
AT1G60910.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT1G61020.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCG);(source:Araport11, TAIR10)
AT1G60940.2	protein_coding	SNF1-related protein kinase 2.10	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.	SNF1-related protein kinase 2.10;(source:Araport11)
AT1G61010.2	protein_coding	cleavage and polyadenylation specificity factor 73-I		cleavage and polyadenylation specificity factor 73-I;(source:Araport11)
AT1G44170.2	protein_coding	aldehyde dehydrogenase 3H1	Encodes an aldehyde dehydrogenase induced by ABA and dehydration that can oxidize saturated aliphatic aldehydes. It is also able to oxidize beta-unsaturated aldehydes, but not aromatic aldehydes. Activity of ALDH3H1 is NAD +-dependent.	aldehyde dehydrogenase 3H1;(source:Araport11)
AT1G02205.2	protein_coding	Fatty acid hydroxylase superfamily	Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined.	Fatty acid hydroxylase superfamily;(source:Araport11)
AT1G68950.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT1G68970.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT1G68860.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT1G69000.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
AT1G68920.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G13390.2	protein_coding			translocase subunit seca;(source:Araport11)
AT1G66270.2	protein_coding	Glycosyl hydrolase superfamily protein	BGLU21 encodes a beta-glucosidase that has a high level of activity against the naturally occuring secondary metabolite scopolin. Recombinant BGLU21 produced in insect cells shows lower levels of activity using the structurally similar substrates esculin (33%) and 4-MU-glucoside (9%).    BGLU21 is glycosylated in planta and has a C-terminal ER retention signal. Transcript analysis as well as protein extraction and western blotting from various plant organs suggest that BGLU21 is only present in roots and seedlings. Transcript levels increase in response to cold, auxin (2,4-D), and methyl jasmonate treatments.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G56070.1	protein_coding	Ribosomal protein S5/Elongation factor G/III/V family protein	encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive.	Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT1G08115.1	small_nuclear_rna	snRNA	U1A small nuclear RNA	U1;(source:Araport11)
AT1G08135.1	protein_coding	cation/H+ exchanger 6B		cation/H+ exchanger 6B;(source:Araport11)
AT1G08140.1	protein_coding	cation/H+ exchanger 6A	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 6A;(source:Araport11)
AT1G08160.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT1G08060.2	protein_coding	ATP-dependent helicase family protein	Encodes a transcriptional silencer that is required for proper expression of PRR/NLR immune receptor genes.	ATP-dependent helicase family protein;(source:Araport11)
AT1G08110.2	protein_coding	lactoylglutathione lyase family protein / glyoxalase I family protein	Encodes a Zn2+ dependent glyoxylase.	lactoylglutathione lyase family protein / glyoxalase I family protein;(source:Araport11)
AT1G77560.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: TTG);(source:Araport11, TAIR10)
AT1G77480.2	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G30680.1	protein_coding	toprim domain-containing protein	Twinkle is a dual localized (mitochondria and chloroplast) DNA primase-helicase. It synthesizes RNA primers from a 5&#8242; -(G/C)GGA-3&#8242; template, where the last two  3' nucleotides are  cryptic. Mitochondrial protein involved in DNA replication which binds to DNA polymerases, Pol1A and Pol1B.	toprim domain-containing protein;(source:Araport11)
AT1G41630.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.1e-280 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G41115.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G41726.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G41723.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G41650.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05636.1);(source:TAIR10)
AT1G14685.2	protein_coding	basic pentacysteine 2	Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.	basic pentacysteine 2;(source:Araport11)
AT1G55520.2	protein_coding	TATA binding protein 2	TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.	TATA binding protein 2;(source:Araport11)
AT1G55490.2	protein_coding	chaperonin 60 beta	encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.	chaperonin 60 beta;(source:Araport11)
AT1G75970.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
AT1G76000.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT1G59520.3	protein_coding	CW7	Encodes CW7.	CW7;(source:Araport11)
AT1G59520.2	protein_coding	CW7	Encodes CW7.	CW7;(source:Araport11)
AT1G30430.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT1G47290.2	protein_coding	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1	Encodes an enzyme with 3&#946;-hydroxysteroid dehydrogenase/C4-decarboxylase activity <i>in vitro</i>. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the <i>Arabidopsis</i> gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound.	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1;(source:Araport11)
AT1G47395.1	protein_coding		Involved in regulation of iron deficiency response genes.	hypothetical protein;(source:Araport11)
AT1G53625.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53570.2	protein_coding	mitogen-activated protein kinase kinase kinase 3	Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK3 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens.	mitogen-activated protein kinase kinase kinase 3;(source:Araport11)
AT1G77815.1	protein_coding			ribonuclease H superfamily polynucleotidyl transferase;(source:Araport11)
AT1G78660.2	protein_coding	gamma-glutamyl hydrolase 1	The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.	gamma-glutamyl hydrolase 1;(source:Araport11)
AT1G59570.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G45243.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G45248.1	protein_coding	Nucleolar histone methyltransferase-related protein		Nucleolar histone methyltransferase-related protein;(source:Araport11)
AT1G45249.2	protein_coding	abscisic acid responsive elements-binding factor 2	Leucine zipper transcription factor that binds to the abscisic acid (ABA)–responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus.  Expressed constitutively in roots,  leaf vascular tissues, and hydathodes or  in all tissues under stress conditions. It's phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment.	abscisic acid responsive elements-binding factor 2;(source:Araport11)
AT1G45191.1	protein_coding	Glycosyl hydrolase superfamily protein	beta-glucosidase related protein, similar to beta-glucosidase GI:3820531 from (Pinus contorta); contains Pfam profile: PF00232 Glycosyl hydrolase family 1	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G45201.2	protein_coding	triacylglycerol lipase-like 1	Target of AtGRP7 regulation.	triacylglycerol lipase-like 1;(source:Araport11)
AT1G26850.3	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G26850.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G26945.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix-loop-helix (bHLH) protein involved in blue/far-red light signaling. Physically interacts with HFR1 and negatively regulates its activity.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G60000.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G48080.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT1G48030.2	protein_coding	mitochondrial lipoamide dehydrogenase 1	Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light.	mitochondrial lipoamide dehydrogenase 1;(source:Araport11)
AT1G47820.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G11280.3	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G11280.2	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G10060.2	protein_coding	branched-chain amino acid transaminase 1	encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	branched-chain amino acid transaminase 1;(source:Araport11)
AT1G10095.1	protein_coding	Protein prenylyltransferase superfamily protein		Protein prenylyltransferase superfamily protein;(source:Araport11)
AT1G66345.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Pentatricopeptide Repeat Protein involved in splicing of nad4 intron which affects biogenesis of the respiratory complex I.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G68530.2	protein_coding	3-ketoacyl-CoA synthase 6	Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 6;(source:Araport11)
AT1G23080.2	protein_coding	Auxin efflux carrier family protein	Encodes a novel component of auxin efflux that is located  apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo.  It is also involved in pattern specification during root development.  In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific  to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing  cellular auxin efflux.	Auxin efflux carrier family protein;(source:Araport11)
AT1G21880.2	protein_coding	lysm domain GPI-anchored protein 1 precursor	Encodes a lysin-motif protein mediating bacterial peptidoglycan sensing and immunity to bacterial infection. Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant. It contains a C-terminal GPI anchor signal and is an ortholog of OsLYP4 and OsLYP6.	lysm domain GPI-anchored protein 1 precursor;(source:Araport11)
AT1G05390.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT1G01060.2	protein_coding	Homeodomain-like superfamily protein	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	Homeodomain-like superfamily protein;(source:Araport11)
AT1G01140.3	protein_coding	CBL-interacting protein kinase 9	Encodes a CBL-interacting protein kinase with similarity to SOS2	CBL-interacting protein kinase 9;(source:Araport11)
AT1G01140.2	protein_coding	CBL-interacting protein kinase 9	Encodes a CBL-interacting protein kinase with similarity to SOS2	CBL-interacting protein kinase 9;(source:Araport11)
AT1G61660.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a transcriptional activator that regulates the expression of genes by binding to their GCG- or E-boxes to mediate physiological responses, including proline biosynthesis and ROS scavenging pathways, to enhance stress tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G48830.2	protein_coding	Ribosomal protein S7e family protein		Ribosomal protein S7e family protein;(source:Araport11)
AT1G26797.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G40103.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to hypothetical proteins from (Arabidopsis thaliana);(source:TAIR10)
AT1G40099.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to hypothetical proteins from (Arabidopsis thaliana);(source:TAIR10)
AT1G40091.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.3e-177 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT1G40097.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.1e-81 P-value blast match to Q9S9W4 /247-408 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G40093.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.9e-258 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G40095.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.4e-256 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G40101.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.6e-152 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G16100.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT1G16020.2	protein_coding	Protein of unknown function (DUF1712)		vacuolar fusion protein (DUF1712);(source:Araport11)
AT1G67950.4	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	ACD11 binding partner, negatively regulates ROS-mediated defense response.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G67950.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	ACD11 binding partner, negatively regulates ROS-mediated defense response.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G67950.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	ACD11 binding partner, negatively regulates ROS-mediated defense response.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G11550.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAG);(source:Araport11, TAIR10)
AT1G11360.2	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT1G11400.2	protein_coding	partner of Y14-MAGO	The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.	partner of Y14-MAGO;(source:Araport11)
AT1G08240.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
AT1G08315.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G24080.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT1G24040.2	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G23900.2	protein_coding	gamma-adaptin 1	Encodes large subunit of the heterotetrameric adaptor protein complex AP-1. AP-1 is required for clathrin coated vesicles budding from the trans-Golgi network or plasma membrane	gamma-adaptin 1;(source:Araport11)
AT1G22750.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G21130.2	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT1G54670.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: TGC);(source:Araport11, TAIR10)
AT1G54830.2	protein_coding	nuclear factor Y, subunit C3	Encodes a NUCLEAR FACTOR-Y C (NF-YC) homologue NF-YC3. NF-YC3., NF-YC4 and NF-YC9 redundantly modulate GA- and ABA-mediated seed germination.	nuclear factor Y, subunit C3;(source:Araport11)
AT1G27760.2	protein_coding	interferon-related developmental regulator family protein / IFRD protein family	Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.	interferon-related developmental regulator family protein / IFRD protein family;(source:Araport11)
AT1G35960.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.3e-34 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT1G35980.1	pseudogene			pseudogene of Ta11-like non-LTR retrotransposon;(source:Araport11)
AT1G35990.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-23 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G80620.1	protein_coding	S15/NS1, RNA-binding protein		S15/NS1, RNA-binding protein;(source:Araport11)
AT1G05980.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: TGT);(source:Araport11, TAIR10)
AT1G06040.2	protein_coding	B-box zinc finger family protein	Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.STO transcript levels are regulated by photoperiod and phtyohormones. STO competes with FLC in the regulation of floral transition genes SOC1 and FT.	B-box zinc finger family protein;(source:Araport11)
AT1G06130.2	protein_coding	glyoxalase 2-4		glyoxalase 2-4;(source:Araport11)
AT1G05785.2	protein_coding	Got1/Sft2-like vescicle transport protein family		Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT1G20040.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAA);(source:Araport11, TAIR10)
AT1G20015.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G20170.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
AT1G20210.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT1G29965.1	protein_coding	Ribosomal protein L18ae/LX family protein		Ribosomal protein L18ae/LX family protein;(source:Araport11)
AT1G01640.2	protein_coding	BTB/POZ domain-containing protein	Putative role in flower development.  Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P=0.1) (Stapleton and Woodruff 2009, personal communication).	BTB/POZ domain-containing protein;(source:Araport11)
AT1G40085.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-132 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G40079.1	pseudogene			pseudogene of zinc ion-binding protein;(source:Araport11)
AT1G40083.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G40084.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains similarity to hypothetical proteins from (Arabidopsis thaliana);(source:TAIR10)
AT1G40080.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT1G42630.1);(source:TAIR10)
AT1G40081.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains similarity to hypothetical proteins from Arabidopsis.;(source:TAIR10)
AT1G40089.1	pseudogene			pseudogene of fructose-2;(source:Araport11)
AT1G40087.1	protein_coding	Plant transposase (Ptta/En/Spm family)		Plant transposase (Ptta/En/Spm family);(source:Araport11)
AT1G26490.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: TGC);(source:Araport11, TAIR10)
AT1G26430.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT1G26440.2	protein_coding	ureide permease 5	uptake assays in a yeast mutant indicated this splice variant is not a cellular importer for allantoin, uracil or xanthine	ureide permease 5;(source:Araport11)
AT1G04720.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met (anticodon: CAT);(source:Araport11, TAIR10)
AT1G04590.2	protein_coding			PPR containing-like protein;(source:Araport11)
AT1G04550.2	protein_coding	AUX/IAA transcriptional regulator family protein	IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem	AUX/IAA transcriptional regulator family protein;(source:Araport11)
AT1G61275.1	small_nuclear_rna	U12; snRNA		U12;(source:Araport11)
AT1G11010.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met (anticodon: CAT);(source:Araport11, TAIR10)
AT1G11030.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCG);(source:Araport11, TAIR10)
AT1G10990.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G38065.1	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G37999.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains similarity to replication proteins from (Arabidopsis thaliana);(source:TAIR10)
AT1G37933.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein GI:4309763 from (Arabidopsis thaliana);(source:TAIR10)
AT1G37801.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.9e-24 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT1G37867.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-195 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G37669.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.0e-258 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G37735.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.9e-189 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G37603.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein GI:4263544 from (Arabidopsis thaliana);(source:TAIR10)
AT1G37340.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.2e-199 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G37537.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.5e-34 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G37471.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.0e-262 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G37405.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.0e-229 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G58225.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G30830.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT1G69840.2	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT1G33370.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: ACC);(source:Araport11, TAIR10)
AT1G33290.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G15450.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT1G15650.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G15420.1	protein_coding		Encodes a novel plant specific protein that is co-expressed with components of pre-rRNA processing complex. Co-localizes with NuGWD1 and SWA1.	WD repeat protein;(source:Araport11)
AT1G22320.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met (anticodon: CAT);(source:Araport11, TAIR10)
AT1G22310.2	protein_coding	methyl-CPG-binding domain 8	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain 8;(source:Araport11)
AT1G22300.2	protein_coding	general regulatory factor 10	Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.	general regulatory factor 10;(source:Araport11)
AT1G58030.1	protein_coding	cationic amino acid transporter 2	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast.	cationic amino acid transporter 2;(source:Araport11)
AT1G58180.2	protein_coding	beta carbonic anhydrase 6		beta carbonic anhydrase 6;(source:Araport11)
AT1G15040.2	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes a nitrogen regulated putative glutamine amidotransferase that represses shoot branching.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT1G15040.1	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes a nitrogen regulated putative glutamine amidotransferase that represses shoot branching.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT1G15020.2	protein_coding	quiescin-sulfhydryl oxidase 1	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.	quiescin-sulfhydryl oxidase 1;(source:Araport11)
AT1G02600.1	pre_trna	pre-tRNA		pre-tRNA tRNA-His (anticodon: GTG);(source:Araport11, TAIR10)
AT1G02480.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT1G77190.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT1G77122.1	protein_coding	Uncharacterised protein family UPF0090		Uncharacterized protein family UPF0090;(source:Araport11)
AT1G63940.2	protein_coding	monodehydroascorbate reductase 6		monodehydroascorbate reductase 6;(source:Araport11)
AT1G63940.4	protein_coding	monodehydroascorbate reductase 6		monodehydroascorbate reductase 6;(source:Araport11)
AT1G63940.3	protein_coding	monodehydroascorbate reductase 6		monodehydroascorbate reductase 6;(source:Araport11)
AT1G63855.2	protein_coding	Putative methyltransferase family protein		Putative methyltransferase family protein;(source:Araport11)
AT1G09245.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G09160.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G09270.2	protein_coding	importin alpha isoform 4	Protein interacts with Agrobacterium proteins VirD2 and VirE2.	importin alpha isoform 4;(source:Araport11)
AT1G66590.2	protein_coding	cytochrome c oxidase 19-1	Mitochondrial copper chaperone which influences copper and iron homeostasis.	cytochrome c oxidase 19-1;(source:Araport11)
AT1G12590.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
AT1G10440.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT1G10590.3	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G10590.2	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G18020.1	protein_coding	FMN-linked oxidoreductases superfamily protein		FMN-linked oxidoreductases superfamily protein;(source:Araport11)
AT1G18210.2	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT1G18090.2	protein_coding	5'-3' exonuclease family protein		5-3 exonuclease family protein;(source:Araport11)
AT1G18150.2	protein_coding	Protein kinase superfamily protein	Encodes mitogen-activated protein kinase 8 (MPK8).  MPK8 connects protein phosphorylation, Ca2+, and ROS in the wound-signaling pathway.	Protein kinase superfamily protein;(source:Araport11)
AT1G06230.2	protein_coding	global transcription factor group E4	This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.	global transcription factor group E4;(source:Araport11)
AT1G06220.2	protein_coding	Ribosomal protein S5/Elongation factor G/III/V family protein	Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS. The mRNA is cell-to-cell mobile.	Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT1G33050.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G15090.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT1G15385.1	protein_coding			cotton fiber protein;(source:Araport11)
AT1G15215.1	protein_coding		Encodes SHH1, a homeodomain protein required for DNA methylation. It is an atypical RNA-directed DNA methylation component, and functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways.	SAWADEE HOMEODOMAIN protein;(source:Araport11)
AT1G15215.2	protein_coding		Encodes SHH1, a homeodomain protein required for DNA methylation. It is an atypical RNA-directed DNA methylation component, and functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways.	SAWADEE HOMEODOMAIN protein;(source:Araport11)
AT1G15350.3	protein_coding			DUF4050 family protein;(source:Araport11)
AT1G15350.2	protein_coding			DUF4050 family protein;(source:Araport11)
AT1G15280.2	protein_coding	CASC3/Barentsz eIF4AIII binding		CASC3/Barentsz eIF4AIII binding protein;(source:Araport11)
AT1G15400.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G78870.2	protein_coding	ubiquitin-conjugating enzyme 35	UBC35/UBC13A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UBC35/UBC13A can form diubiquitin and triubiquitin chains in combination with MMZ1,2,3,4/(UEV1A,B,C,D) in vitro. It can also functionally complement an mms2 ubc13 mutation in budding yeast by increasing the double mutant's viability in the presence of the DNA damaging agent MMS, when it is co-expressed with MMZ / UEV1 genes. A wild type phenotype is restored with MMZ3/UEV1C and MMZ4/UEV1D, but only partial complementation is achieved with MMZ1/UEV1A or MMZ2/UEV1B. The mRNA is cell-to-cell mobile.	ubiquitin-conjugating enzyme 35;(source:Araport11)
AT1G78780.2	protein_coding	pathogenesis-related family protein		pathogenesis-related family protein;(source:Araport11)
AT1G52170.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT1G75070.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT1G40141.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.9e-98 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G40139.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G40137.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.0e-165 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT1G40133.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1);(source:TAIR10)
AT1G40135.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-40 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G40131.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.9e-118 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G40129.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G40127.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.2e-59 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT1G53090.2	protein_coding	SPA1-related 4	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain.  SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	SPA1-related 4;(source:Araport11)
AT1G21800.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: TTG);(source:Araport11, TAIR10)
AT1G21690.2	protein_coding	ATPase family associated with various cellular activities (AAA) 		ATPase family associated with various cellular activities (AAA);(source:Araport11)
AT1G21750.2	protein_coding	PDI-like 1-1	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response. The mRNA is cell-to-cell mobile.	PDI-like 1-1;(source:Araport11)
AT1G61880.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT1G61910.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAG);(source:Araport11, TAIR10)
AT1G60580.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT1G60820.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT1G34370.2	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity.  In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity. Cell wall of the mutant is unstable in low pH medium (pH 4.5) in low Ca solution. This would mediate Ca-alleviation of low pH stress through pectin-Ca interaction. In vitro binding and mutated-promoter-GUS assays identified that STOP1 directly activates AtALMT1 expression through the binding to the promoter by four zinc finger domains. Binding of STOP1 to promoter is an essential step of Al-inducible AtALMT1 expression. The mRNA is cell-to-cell mobile.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G76900.2	protein_coding	tubby like protein 1	Member of plant TLP family. Contains terminal F-box domain, interacts with ASK proteins. Tethered to the PM.	tubby like protein 1;(source:Araport11)
AT1G76890.2	protein_coding	Duplicated homeodomain-like superfamily protein	encodes a plant trihelix DNA-binding protein	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT1G15750.2	protein_coding	Transducin family protein / WD-40 repeat family protein	Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus.  Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top help of the embryo during the transition stage of embryogenesis. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT1G09110.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
AT1G08870.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: TGC);(source:Araport11, TAIR10)
AT1G08950.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT1G08845.1	protein_coding	Ribosomal L18p/L5e family protein		Ribosomal L18p/L5e family protein;(source:Araport11)
AT1G08985.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT1G08920.2	protein_coding	ERD (early response to dehydration) six-like 1	Encodes ESL1, a transporter for monosaccharides.	ERD (early response to dehydration) six-like 1;(source:Araport11)
AT1G08970.2	protein_coding	nuclear factor Y, subunit C9	Encodes a NUCLEAR FACTOR-Y C (NF-YC) homologue NF-YC9. NF-YC3., NF-YC4 and NF-YC9 redundantly modulate GA- and ABA-mediated seed germination.	nuclear factor Y, subunit C9;(source:Araport11)
AT1G36350.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCT);(source:Araport11, TAIR10)
AT1G36390.2	protein_coding	Co-chaperone GrpE family protein	Chloroplast GrpE protein.	Co-chaperone GrpE family protein;(source:Araport11)
AT1G14060.1	protein_coding	GCK domain-containing protein		GCK domain-containing protein;(source:Araport11)
AT1G55370.2	protein_coding	NDH-dependent cyclic electron flow 5		NDH-dependent cyclic electron flow 5;(source:Araport11)
AT1G55325.1	protein_coding	RNA polymerase II transcription mediators	Encodes the Arabidopsis homolog of the transcriptional regulator MED13, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation.	RNA polymerase II transcription mediator;(source:Araport11)
AT1G55350.4	protein_coding	calpain-type cysteine protease family	Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway. It localizes to membranes and undergoes intramolecular autolytic cleavage events that release the calpain domain into  the cytoplasm.	calpain-type cysteine protease family;(source:Araport11)
AT1G55350.2	protein_coding	calpain-type cysteine protease family	Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway. It localizes to membranes and undergoes intramolecular autolytic cleavage events that release the calpain domain into  the cytoplasm.	calpain-type cysteine protease family;(source:Araport11)
AT1G55350.3	protein_coding	calpain-type cysteine protease family	Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway. It localizes to membranes and undergoes intramolecular autolytic cleavage events that release the calpain domain into  the cytoplasm.	calpain-type cysteine protease family;(source:Araport11)
AT1G32620.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met (anticodon: CAT);(source:Araport11, TAIR10)
AT1G01270.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: CTG);(source:Araport11, TAIR10)
AT1G52695.1	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52500.2	protein_coding	MUTM homolog-1	Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Encodes a formamidopyrimidine-DNA glycosylase that has abasic lyase activity and is able to nick double- stranded oligonucleotides containing 8-oxo-7,8-dihydroguanine (8-oxoG) in vitro.	MUTM homolog-1;(source:Araport11)
AT1G18820.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAG);(source:Araport11, TAIR10)
AT1G18660.3	protein_coding	zinc finger (C3HC4-type RING finger) family protein	Membrane localized protein of unknown function. Involved in negative regulation of immune response. Mutants have increased resistance to pathogens.	zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G18660.2	protein_coding	zinc finger (C3HC4-type RING finger) family protein	Membrane localized protein of unknown function. Involved in negative regulation of immune response. Mutants have increased resistance to pathogens.	zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G12510.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT1G12370.2	protein_coding	photolyase 1	encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The  uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele	photolyase 1;(source:Araport11)
AT1G12440.2	protein_coding	A20/AN1-like zinc finger family protein		A20/AN1-like zinc finger family protein;(source:Araport11)
AT1G31850.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G31930.2	protein_coding	extra-large GTP-binding protein 3	Encodes XLG3 (extra-large G protein 3) that shows significant similarity to the G protein alpha subunit in its C terminal region.  Involved in the regulation of root morphological and growth responses.	extra-large GTP-binding protein 3;(source:Araport11)
AT1G20420.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G20450.2	protein_coding	Dehydrin family protein	Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.	Dehydrin family protein;(source:Araport11)
AT1G80430.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G80490.2	protein_coding	TOPLESS-related 1		TOPLESS-related 1;(source:Araport11)
AT1G80420.2	protein_coding	BRCT domain-containing DNA repair protein	Encodes a component of plant break excision repair and functions at several stages during active DNA demethylation in Arabidopsis.	BRCT domain-containing DNA repair protein;(source:Araport11)
AT1G52030.2	protein_coding	myrosinase-binding protein 2	Similar to  myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.	myrosinase-binding protein 2;(source:Araport11)
AT1G52150.2	protein_coding	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein	Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein;(source:Araport11)
AT1G40121.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to hypothetical proteins from (Arabidopsis thaliana);(source:TAIR10)
AT1G40125.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30670.1);(source:TAIR10)
AT1G40123.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.0e-142 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT1G51405.1	protein_coding	myosin-related		myosin-like protein;(source:Araport11)
AT1G32385.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G32370.2	protein_coding	tobamovirus multiplication 2B	Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta. The mRNA is cell-to-cell mobile.	tobamovirus multiplication 2B;(source:Araport11)
AT1G32410.2	protein_coding	Vacuolar protein sorting 55 (VPS55) family protein		Vacuolar protein sorting 55 (VPS55) family protein;(source:Araport11)
AT1G70790.2	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	C2-domain ABA-related (CAR) protein, involved in the recruitment of ABA receptors to the plasma membrane to facilitate ABA signaling. Its stability and dynamic localization is regulated by LOT1.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G66650.1	protein_coding	Protein with RING/U-box and TRAF-like domains		Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT1G69130.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT1G69060.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G69220.2	protein_coding	Protein kinase superfamily protein	Encodes serine/threonine kinase 1 (SIK1), a Hippo homolog. Regulates cell proliferation and cell expansion.	Protein kinase superfamily protein;(source:Araport11)
AT1G06860.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT1G06880.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT1G06800.2	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G25210.1	protein_coding	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein		UDP-3-O-acyl N-acetylglycosamine deacetylase family protein;(source:Araport11)
AT1G16450.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: CCG);(source:Araport11, TAIR10)
AT1G72880.2	protein_coding	Survival protein SurE-like phosphatase/nucleotidase		Survival protein SurE-like phosphatase/nucleotidase;(source:Araport11)
AT1G28395.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G24267.1	protein_coding	Protein of unknown function (DUF1664)		bZIP transcription factor, putative (DUF1664);(source:Araport11)
AT1G24145.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G71310.2	protein_coding	cobalt ion binding	A protein coding gene with unknown function.  The 5’ UTR and the first two exons and introns of this gene overlap with a RNA coding gene TER1. TER1 (GenBank accession no. HQ401284) encodes a putative template sequence (5&#8242;-CTAAACCCTA-3&#8242;) corresponding to 1.5 copies of the Arabidopsis telomere repeat (PNAS 2011, 108:73-78).	cobalt ion binding protein;(source:Araport11)
AT1G28210.2	protein_coding	DNAJ heat shock family protein	DnaJ homolog AtJ1 (atj)	DNAJ heat shock family protein;(source:Araport11)
AT1G28330.3	protein_coding	dormancy-associated protein-like 1	dormancy-associated protein (DRM1)	dormancy-associated protein-like 1;(source:Araport11)
AT1G28330.2	protein_coding	dormancy-associated protein-like 1	dormancy-associated protein (DRM1)	dormancy-associated protein-like 1;(source:Araport11)
AT1G78250.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met (anticodon: CAT);(source:Araport11, TAIR10)
AT1G05710.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G13010.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: ACG);(source:Araport11, TAIR10)
AT1G13240.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT1G13080.2	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 2	cytochrome P450 monooxygenase	cytochrome P450, family 71, subfamily B, polypeptide 2;(source:Araport11)
AT1G32230.2	protein_coding	WWE protein-protein interaction domain protein family	Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family.  Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants.  Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm. The mRNA is cell-to-cell mobile.	WWE protein-protein interaction domain protein family;(source:Araport11)
AT1G32200.2	protein_coding	phospholipid/glycerol acyltransferase family protein	Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol.	phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT1G73900.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT1G73920.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G63510.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT1G25500.2	protein_coding	Plasma-membrane choline transporter family protein		Plasma-membrane choline transporter family protein;(source:Araport11)
AT1G43667.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G50100.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAG);(source:Araport11, TAIR10)
AT1G50070.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAG);(source:Araport11, TAIR10)
AT1G49950.2	protein_coding	telomere repeat binding factor 1	Encodes a telomeric DNA binding protein and Single Myb Histone (SMH) gene family member. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats.Mutations in TRB1 and TRB3 enhance the lhp1 mutant phenotype. Triple mutants are more strongly affected than the respective double mutants with lhp1. TRB1 binds non-H3K27me3 target genes predominantly at the transcription start sites and its presence increases the expression of several of these targets, enriched for functions of primary metabolism. At H3K27me3 target genes, TRB1 binding is more distributed across gene bodies and at extended promoter regions, corresponding to an enrichment of putative binding sites "RMCCTAR". At these genes, TRB1 particiaptes in the repression because several direct targets are further upregulated in trb1 lhp1 double mutants as compared to lhp1 mutants.	telomere repeat binding factor 1;(source:Araport11)
AT1G20820.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT1G20795.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G72780.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G72550.2	protein_coding	tRNA synthetase beta subunit family protein		tRNA synthetase beta subunit family protein;(source:Araport11)
AT1G29210.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT1G29040.2	protein_coding			50S ribosomal protein L34;(source:Araport11)
AT1G37200.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.3e-185 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT1G37275.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30600.1);(source:TAIR10)
AT1G37190.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, contains similarity to hypothetical proteins from (Arabidopsis thaliana);(source:TAIR10)
AT1G37180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.2e-07 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G37210.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.4e-67 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G37150.3	protein_coding	holocarboxylase synthetase 2	Although HCS2 is predicted to encode a biotin protein ligase / holocarboxylase synthetase (HCS), hcs2 mutants do not show a decrease in HCS activity. A dual-targeted HCS1 (At2g25710) might account for the HCS activity observed in multiple subcellular compartments in Arabidopsis.	holocarboxylase synthetase 2;(source:Araport11)
AT1G37150.4	protein_coding	holocarboxylase synthetase 2	Although HCS2 is predicted to encode a biotin protein ligase / holocarboxylase synthetase (HCS), hcs2 mutants do not show a decrease in HCS activity. A dual-targeted HCS1 (At2g25710) might account for the HCS activity observed in multiple subcellular compartments in Arabidopsis.	holocarboxylase synthetase 2;(source:Araport11)
AT1G37150.2	protein_coding	holocarboxylase synthetase 2	Although HCS2 is predicted to encode a biotin protein ligase / holocarboxylase synthetase (HCS), hcs2 mutants do not show a decrease in HCS activity. A dual-targeted HCS1 (At2g25710) might account for the HCS activity observed in multiple subcellular compartments in Arabidopsis.	holocarboxylase synthetase 2;(source:Araport11)
AT1G31110.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT1G78000.2	protein_coding	sulfate transporter 1;2	Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.	sulfate transporter 1;(source:Araport11)
AT1G43820.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT1G17345.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G17440.2	protein_coding	Transcription initiation factor TFIID subunit A	Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12.  The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction.  Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression. Cytokinin-hypersensitive 1 (CKH1) mutants are characterized by rapidly growing calli with a green color at low levels of cytokinins, which are insufficient to induce such cytokinin responses in wild-type explants. It is hypothesized that CKH1 acts as a negative regulator of cytokinin signaling in Arabidopsis.	Transcription initiation factor TFIID subunit A;(source:Araport11)
AT1G66510.3	protein_coding	AAR2 protein family		AAR2 protein family;(source:Araport11)
AT1G66510.2	protein_coding	AAR2 protein family		AAR2 protein family;(source:Araport11)
AT1G23480.2	protein_coding	cellulose synthase-like A3	encodes a gene similar to cellulose synthase	cellulose synthase-like A3;(source:Araport11)
AT1G49020.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT1G49160.2	protein_coding	Protein kinase superfamily protein	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its	Protein kinase superfamily protein;(source:Araport11)
AT1G49040.2	protein_coding	stomatal cytokinesis defective / SCD1 protein (SCD1)	Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells.  The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile.	stomatal cytokinesis defective / SCD1 protein (SCD1);(source:Araport11)
AT1G30450.3	protein_coding	cation-chloride co-transporter 1	member of Cation-chloride co-transporter family	cation-chloride co-transporter 1;(source:Araport11)
AT1G30450.2	protein_coding	cation-chloride co-transporter 1	member of Cation-chloride co-transporter family	cation-chloride co-transporter 1;(source:Araport11)
AT1G30500.2	protein_coding	nuclear factor Y, subunit A7		nuclear factor Y, subunit A7;(source:Araport11)
AT1G30510.2	protein_coding	root FNR 2	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	root FNR 2;(source:Araport11)
AT1G73650.2	protein_coding	Protein of unknown function (DUF1295)		3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295);(source:Araport11)
AT1G56790.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G56760.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G56730.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G56850.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G56820.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G56880.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G56910.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G56940.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G56980.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56960.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56990.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57010.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57410.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57430.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57440.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57020.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57040.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57460.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57470.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57050.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57490.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57070.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57080.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57500.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57100.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57520.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57530.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56970.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57030.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57000.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57090.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57060.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57150.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57120.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57240.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57270.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57210.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57180.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57300.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57330.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57390.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57360.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57480.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57450.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57420.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57510.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G57130.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57110.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57140.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57190.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57170.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57160.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57200.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57220.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57250.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57230.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56740.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56750.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57260.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56770.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56780.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57290.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57280.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57310.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56800.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57320.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57350.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57340.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57370.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57380.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G57400.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56810.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56840.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56830.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56860.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56870.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56890.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56900.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56930.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56920.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G56950.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G11640.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT1G11765.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G11806.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G11803.1	pseudogene		pseudogene of (SAUR) auxin-responsive family protein	pseudogene of SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G11650.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes an RNA binding protein with three RNA recognition motifs. The mRNA is cell-to-cell mobile.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G74960.2	protein_coding	fatty acid biosynthesis 1	Encodes a plastidic beta-ketoacyl-ACP synthase II, involved in fatty acid elongation from 16:0-ACP to 18:0-ACP. Homozygous knock-out mutants are embryo lethal, indicating early embryo development is sensitive to elevated 16:0.	fatty acid biosynthesis 1;(source:Araport11)
AT1G74910.3	protein_coding	ADP-glucose pyrophosphorylase family protein	KONJAC1 is imilar to sugar pyrophosphorylases but has an insertion of 2 AA in the pyrophosphorylase consensus motif that is highly conserved in GMPPs. It lacks GDP-mannose pyrophosphorylase activity but can simulate GDP-mannose pyrophosphorylase activity of VTC1.	ADP-glucose pyrophosphorylase family protein;(source:Araport11)
AT1G74910.2	protein_coding	ADP-glucose pyrophosphorylase family protein	KONJAC1 is imilar to sugar pyrophosphorylases but has an insertion of 2 AA in the pyrophosphorylase consensus motif that is highly conserved in GMPPs. It lacks GDP-mannose pyrophosphorylase activity but can simulate GDP-mannose pyrophosphorylase activity of VTC1.	ADP-glucose pyrophosphorylase family protein;(source:Araport11)
AT1G21420.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: TTG);(source:Araport11, TAIR10)
AT1G21350.2	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT1G68580.2	protein_coding	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein		Agenet and bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT1G70490.2	protein_coding	Ras-related small GTP-binding family protein	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	Ras-related small GTP-binding family protein;(source:Araport11)
AT1G70620.2	protein_coding	cyclin-related		cyclin-like protein;(source:Araport11)
AT1G63790.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: TGT);(source:Araport11, TAIR10)
AT1G07702.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G07760.1	pre_trna	pre-tRNA		pre-tRNA tRNA-His (anticodon: GTG);(source:Araport11, TAIR10)
AT1G07820.2	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT1G07890.2	protein_coding	ascorbate peroxidase 1	Encodes a cytosolic ascorbate peroxidase APX1.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. The mRNA is cell-to-cell mobile.	ascorbate peroxidase 1;(source:Araport11)
AT1G07780.2	protein_coding	phosphoribosylanthranilate isomerase 1	Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family. The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT1G69300.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT1G69325.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT1G62800.2	protein_coding	aspartate aminotransferase 4	Encodes aspartate aminotransferase (Asp4).	aspartate aminotransferase 4;(source:Araport11)
AT1G62760.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein	Pectin methylesterase inhibitor that controls PME activity and pectin methylesterification during Botrytis infection.	Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G62790.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G59880.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT1G59750.2	protein_coding	auxin response factor 1	Encodes a member of the auxin response factor family. ARFs bind to the cis element 5'-TGTCTC-3' ARFs mediate changes in gene expression in response to auxin. ARF's form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence.ARF1:LUC and 3xHA:ARF1 proteins have a half-life of ~3-4 hours and their degradation is reduced by proteasome inhibitors. 3xHA:ARF1 degradation is not affected by a pre-treatment with IAA. A nuclear-targeted fusion protein containing the middle region of ARF1 linked to LUC:NLS has a similar half-life to the full-length ARF1:LUC construct. The degradation of 3xHA:ARF1 is not affected in an axr6-3 mutant grown at room temperature, although the degradation of AXR2/IAA7 is slowed under these conditions.	auxin response factor 1;(source:Araport11)
AT1G60840.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT1G80860.2	protein_coding	phospholipid N-methyltransferase	Encodes a single-copy phospholipid N-methyltransferase, involved in phosphatidylcholine biosynthesis. Has specific activity towards phosphatidylmonomethylethanolamine and phosphatidyldimethylethanolamine, but not phosphatidylethanolamine.	phospholipid N-methyltransferase;(source:Araport11)
AT1G80780.2	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Deadenylase.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G08630.3	protein_coding	threonine aldolase 1	Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.	threonine aldolase 1;(source:Araport11)
AT1G08630.2	protein_coding	threonine aldolase 1	Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.	threonine aldolase 1;(source:Araport11)
AT1G08750.2	protein_coding	Peptidase C13 family	GPI8/PIG-K homolog involved in stomata development. Loss of function alleles do not transmit through the pollen.	Peptidase C13 family;(source:Araport11)
AT1G08680.2	protein_coding	ARF GAP-like zinc finger-containing protein ZIGA4	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.	ARF GAP-like zinc finger-containing protein ZIGA4;(source:Araport11)
AT1G08660.2	protein_coding	MALE GAMETOPHYTE DEFECTIVE 2	Encodes a sialyltransferase-like protein that is localized to the Golgi apparatus and is involved in pollen tube growth and pollen germination.	MALE GAMETOPHYTE DEFECTIVE 2;(source:Araport11)
AT1G01870.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: TAC);(source:Araport11, TAIR10)
AT1G01890.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT1G01910.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G01480.2	protein_coding	1-amino-cyclopropane-1-carboxylate synthase 2	a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family,  isolated from a flower-specific cDNA library.	1-amino-cyclopropane-1-carboxylate synthase 2;(source:Araport11)
AT1G01540.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G77040.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: TTG);(source:Araport11, TAIR10)
AT1G76930.2	protein_coding	extensin 4	Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins.  The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.	extensin 4;(source:Araport11)
AT1G76990.3	protein_coding	ACT domain repeat 3		ACT domain repeat 3;(source:Araport11)
AT1G76990.2	protein_coding	ACT domain repeat 3		ACT domain repeat 3;(source:Araport11)
AT1G75166.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G75163.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G75180.2	protein_coding	Erythronate-4-phosphate dehydrogenase family protein		Erythronate-4-phosphate dehydrogenase family protein;(source:Araport11)
AT1G07580.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT1G07320.2	protein_coding	ribosomal protein L4	encodes a plastid ribosomal protein L4	ribosomal protein L4;(source:Araport11)
AT1G07480.2	protein_coding	Transcription factor IIA, alpha/beta subunit		Transcription factor IIA, alpha/beta subunit;(source:Araport11)
AT1G02760.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT1G02950.2	protein_coding	glutathione S-transferase F4	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase F4;(source:Araport11)
AT1G02850.2	protein_coding	beta glucosidase 11		beta glucosidase 11;(source:Araport11)
AT1G02960.2	protein_coding			kinetochore protein;(source:Araport11)
AT1G02840.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	SR34/SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G02880.2	protein_coding	thiamin pyrophosphokinase1	Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.	thiamin pyrophosphokinase1;(source:Araport11)
AT1G02880.3	protein_coding	thiamin pyrophosphokinase1	Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.	thiamin pyrophosphokinase1;(source:Araport11)
AT1G64120.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAA);(source:Araport11, TAIR10)
AT1G64110.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Target promoter of the male germline-specific transcription factor DUO1.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G09932.1	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT1G09840.2	protein_coding	shaggy-like protein kinase 41		shaggy-like protein kinase 41;(source:Araport11)
AT1G09970.2	protein_coding	Leucine-rich receptor-like protein kinase family protein	RLK7 belongs to a leucine-rich repeat class of receptor-likekinase (LRR-RLKs). It is involved in the control of germination speed and the tolerance to oxidant stress. The mRNA is cell-to-cell mobile.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT1G03935.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G03746.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G03850.2	protein_coding	Glutaredoxin family protein	Encodes glutaredoxin ATGRXS13, required to facilitate Botrytis cinerea infection of Arabidopsis thaliana plants. Sylvain La Camera et al (2011, PMID:21756272) reported a third splice variant in addition to the two annotated in TAIR10. It is a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2 and suppress ORA59 promoter activity.	Glutaredoxin family protein;(source:Araport11)
AT1G13720.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: CGT);(source:Araport11, TAIR10)
AT1G13650.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G03743.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G03502.1	small_nucleolar_rna	snoRNA	small nucleolar RNA	snoRNA;(source:Araport11)
AT1G03515.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT1G03506.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G03640.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT1G03570.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: CTG);(source:Araport11, TAIR10)
AT1G03680.1	protein_coding	thioredoxin M-type 1	encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.	thioredoxin M-type 1;(source:Araport11)
AT1G70050.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT1G70180.2	protein_coding	Sterile alpha motif (SAM) domain-containing protein		Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT1G70100.2	protein_coding			neurofilament heavy protein;(source:Araport11)
AT1G55625.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
AT1G55620.2	protein_coding	chloride channel F	Encodes a chloride channel protein that has been localized to the chloroplast and golgi apparatus. Complements yeast gef1 mutant and therefor may function to acidify the golgi lumen.	chloride channel F;(source:Araport11)
AT1G55690.3	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G55690.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G04140.2	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT1G10670.2	protein_coding	ATP-citrate lyase A-1	One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase.  Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.	ATP-citrate lyase A-1;(source:Araport11)
AT1G79670.2	protein_coding	Wall-associated kinase family protein	Encodes a receptor-like kinase that does not contain an extracellular leucine-rich repeat domain.  A novel type of dominant disease-resistance protein that confers resistance to a broad spectrum of Fusarium races.	Wall-associated kinase family protein;(source:Araport11)
AT1G79820.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G67300.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G64625.1	protein_coding	Serine/threonine-protein kinase WNK (With No Lysine)-related	Encodes a plant-specific basic helix-loop-helix (bHLH) protein that is required for normal meiotic entry and the establishment of meiotic synchrony.  It plays a role in xylem differentiation downstream of auxin.	Serine/threonine-protein kinase WNK (With No Lysine)-like protein;(source:Araport11)
AT1G29850.2	protein_coding	double-stranded DNA-binding family protein	Encodes a protein that by its interaction with HAM acetyltransferases plays an important role during DNA damage responses induced by UV-B radiation and participates in programmed cell death programs.	double-stranded DNA-binding family protein;(source:Araport11)
AT1G29750.2	protein_coding	receptor-like kinase in flowers 1	Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains.	receptor-like kinase in flowers 1;(source:Araport11)
AT1G74456.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G74453.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G74610.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAG);(source:Araport11, TAIR10)
AT1G74570.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: AAG);(source:Araport11, TAIR10)
AT1G74530.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G74510.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G17570.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G28900.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28920.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28910.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28930.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28940.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28970.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28950.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28980.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28990.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28800.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28810.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28820.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT1G28720.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28830.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28730.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT1G28740.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28750.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28840.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28850.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28770.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28860.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28870.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT1G28780.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28880.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28790.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28890.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G28960.3	protein_coding	nudix hydrolase homolog 15	Encodes a ppGpp pyrophosphohydrolase.	nudix hydrolase homolog 15;(source:Araport11)
AT1G28660.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G65830.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT1G65845.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G65680.1	protein_coding	expansin B2	member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin B2;(source:Araport11)
AT1G75380.3	protein_coding	bifunctional nuclease in basal defense response 1	Encodes a nuclease involved in ABA-mediated callose deposition.  It has been shown to interact with JAZ proteins, binds to a jasmonic acid-responsive element (JARE) and repress AtJMT expression.	bifunctional nuclease in basal defense response 1;(source:Araport11)
AT1G75380.2	protein_coding	bifunctional nuclease in basal defense response 1	Encodes a nuclease involved in ABA-mediated callose deposition.  It has been shown to interact with JAZ proteins, binds to a jasmonic acid-responsive element (JARE) and repress AtJMT expression.	bifunctional nuclease in basal defense response 1;(source:Araport11)
AT1G04320.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT1G04400.2	protein_coding	cryptochrome 2	Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function.  It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.The life-time of cry2 signaling state in situ (in planta) is about 16 min.	cryptochrome 2;(source:Araport11)
AT1G52350.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCG);(source:Araport11, TAIR10)
AT1G52320.2	protein_coding			kinesin-like protein;(source:Araport11)
AT1G52410.2	protein_coding	TSK-associating protein 1	Contains a novel calcium-binding repeat sequence.  Binds TSK in vitro.  Localizes to small cytoplasmic vesicles in interphase cells.  In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis.  May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex.  Can form multimers. The mRNA is cell-to-cell mobile.	TSK-associating protein 1;(source:Araport11)
AT1G79980.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCG);(source:Araport11, TAIR10)
AT1G79920.2	protein_coding	Heat shock protein 70 (Hsp 70) family protein		Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT1G51680.2	protein_coding	4-coumarate:CoA ligase 1	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate.  The catalytic efficiency was in the following (descending) order:  p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.	4-coumarate:CoA ligase 1;(source:Araport11)
AT1G42120.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
AT1G58280.2	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT1G58265.1	protein_coding	Cytochrome P450 superfamily protein		Cytochrome P450 superfamily protein;(source:Araport11)
AT1G19376.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G19373.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G19580.1	protein_coding	gamma carbonic anhydrase 1	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	gamma carbonic anhydrase 1;(source:Araport11)
AT1G19400.2	protein_coding	Erythronate-4-phosphate dehydrogenase family protein	Tail-anchored (TA) OEP membrane protein which possesses a single C-terminal transmembrane domain targeting post-translationally to plastids.	Erythronate-4-phosphate dehydrogenase family protein;(source:Araport11)
AT1G80250.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT1G80030.3	protein_coding	Molecular chaperone Hsp40/DnaJ family protein		Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT1G80030.2	protein_coding	Molecular chaperone Hsp40/DnaJ family protein		Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT1G70280.2	protein_coding	NHL domain-containing protein		NHL domain-containing protein;(source:Araport11)
AT1G70410.2	protein_coding	beta carbonic anhydrase 4	Encodes a putative beta-carbonic anhydrase betaCA4.  Together with betaCA1 (At3g01500) regulates CO2-controlled stomatal movements in guard cells.	beta carbonic anhydrase 4;(source:Araport11)
AT1G27380.2	protein_coding	ROP-interactive CRIB motif-containing protein 2	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.	ROP-interactive CRIB motif-containing protein 2;(source:Araport11)
AT1G16840.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G16840.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G16890.2	protein_coding	ubiquitin-conjugating enzyme 36	UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.	ubiquitin-conjugating enzyme 36;(source:Araport11)
AT1G63110.2	protein_coding	GPI transamidase subunit PIG-U		GPI transamidase subunit PIG-U;(source:Araport11)
AT1G22180.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G65040.2	protein_coding	RING/U-box superfamily protein	Encodes one of the Arabidopsis homologs of the yeast/human Hrd1 protein: AT3G16090 (Hrd1A), AT1G65040 (Hrd1B). Involved in ERAD (Endoplasmic reticulum-associated degradation).	RING/U-box superfamily protein;(source:Araport11)
AT1G65060.2	protein_coding	4-coumarate:CoA ligase 3	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica.  mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and  bolting stems of mature plants.  The catalytic efficiency was in the following (descending) order:  p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.	4-coumarate:CoA ligase 3;(source:Araport11)
AT1G13850.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: TGC);(source:Araport11, TAIR10)
AT1G13840.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: TGC);(source:Araport11, TAIR10)
AT1G13960.2	protein_coding	WRKY DNA-binding protein 4	Encodes WRKY DNA-binding protein 4 (WRKY4).	WRKY DNA-binding protein 4;(source:Araport11)
AT1G13860.3	protein_coding	QUASIMODO2 LIKE 1	Encodes QUASIMODO2 LIKE1 (QUL1), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.	QUASIMODO2 LIKE 1;(source:Araport11)
AT1G13860.2	protein_coding	QUASIMODO2 LIKE 1	Encodes QUASIMODO2 LIKE1 (QUL1), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.	QUASIMODO2 LIKE 1;(source:Araport11)
AT1G35580.2	protein_coding	cytosolic invertase 1	CINV1 / A/N-InvG is an alkaline/neutral invertase that breaks sucrose down into fructose and glucose (GH100). The exact localization of CINV1 remains under investigation but there is evidence that fluorescently-tagged CINV1 localizes to the cytoplasm. atinvg mutants have reduced root growth, reduced invertase activity, and increased expression of antioxidant genes under basal conditions. The levels of CINV1 / A/N-InvG transcripts rise in response to a hydrogen peroxide treatment. The protein has been shown to interact with PIP5K9.	cytosolic invertase 1;(source:Araport11)
AT1G35515.1	protein_coding			high response to osmotic stress 10;(source:Araport11)
AT1G76330.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
AT1G03190.2	protein_coding	RAD3-like DNA-binding helicase protein	UV damage and heat induce a common stress response in plants that leads to tissue death and reduced chloroplast function. The UVH6 product is suggested to be a negative regulator of this response.	RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G54020.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G54080.2	protein_coding	oligouridylate-binding protein 1A		oligouridylate-binding protein 1A;(source:Araport11)
AT1G54100.2	protein_coding	aldehyde dehydrogenase 7B4	Aldehyde dehydrogenase	aldehyde dehydrogenase 7B4;(source:Araport11)
AT1G54040.2	protein_coding	epithiospecifier protein	Epithiospecifier protein, interacts with WRKY53. Involved in pathogen resistance and leaf senescence.	epithiospecifier protein;(source:Araport11)
AT1G64420.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: CGC);(source:Araport11, TAIR10)
AT1G18430.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT1G70850.2	protein_coding	MLP-like protein 34		MLP-like protein 34;(source:Araport11)
AT1G70830.2	protein_coding	MLP-like protein 28		MLP-like protein 28;(source:Araport11)
AT1G66160.2	protein_coding	CYS, MET, PRO, and GLY protein 1		CYS, MET, PRO, and GLY protein 1;(source:Araport11)
AT1G29400.2	protein_coding	MEI2-like protein 5	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML5 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML5 is the transcript with highest frequency of alternative splicing. Expression was detected during embryo development (heart and torpedo stage) and in vegetative and floral apices.	MEI2-like protein 5;(source:Araport11)
AT1G29410.2	protein_coding	phosphoribosylanthranilate isomerase 3	Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.	phosphoribosylanthranilate isomerase 3;(source:Araport11)
AT1G19715.1	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G71700.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT1G71865.1	protein_coding			PyrD;(source:Araport11)
AT1G20250.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT1G10340.2	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT1G14530.2	protein_coding	Protein of unknown function (DUF1084)		tobamovirus multiplication-like protein (DUF1084);(source:Araport11)
AT1G14260.2	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G68770.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT1G09530.2	protein_coding	phytochrome interacting factor 3	Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a  significant role in controlling light input and function of the circadian  clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.	phytochrome interacting factor 3;(source:Araport11)
AT1G09500.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G49690.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: CCT);(source:Araport11, TAIR10)
AT1G49630.3	protein_coding	presequence protease 2	Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot.	presequence protease 2;(source:Araport11)
AT1G49630.2	protein_coding	presequence protease 2	Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot.	presequence protease 2;(source:Araport11)
AT1G49730.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G56010.2	protein_coding	NAC domain containing protein 1	Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1)	NAC domain containing protein 1;(source:Araport11)
AT1G56220.3	protein_coding	Dormancy/auxin associated family protein		Dormancy/auxin associated family protein;(source:Araport11)
AT1G56220.2	protein_coding	Dormancy/auxin associated family protein		Dormancy/auxin associated family protein;(source:Araport11)
AT1G56280.2	protein_coding	drought-induced 19	Encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The increase in transcript level is independent from abscisic acid level. Sequence is not similar to any protein of known function. It appears to be a member of plant-specific gene family. It's phosphorylated by AtCPK11 in a Ca(2+)-dependent manner at Thr105 and Ser107 within the AtDi19 bipartite nuclear localization signal	drought-induced 19;(source:Araport11)
AT1G76520.2	protein_coding	Auxin efflux carrier family protein		Auxin efflux carrier family protein;(source:Araport11)
AT1G52860.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G52825.1	protein_coding			sporulation-specific protein;(source:Araport11)
AT1G52730.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G19000.2	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT1G40117.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-281 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G40119.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, member of hypothetical protein common family;(source:TAIR10)
AT1G40115.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09900.1);(source:TAIR10)
AT1G40113.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.1e-155 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT1G40109.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 0. P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT1G40107.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT1G40105.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 5.1e-40 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G04950.2	protein_coding	TATA BOX ASSOCIATED FACTOR II 59	Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.  Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced.  This is due to reduced pollen tube growth of the mutant.	TATA BOX ASSOCIATED FACTOR II 59;(source:Araport11)
AT1G04870.2	protein_coding	protein arginine methyltransferase 10	Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro.  Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.	protein arginine methyltransferase 10;(source:Araport11)
AT1G04970.2	protein_coding	lipid-binding serum glycoprotein family protein	Encodes one of the two LBP/BPI related proteins (AT1G04970/LBR-1, AT3G20270/LBR-2) that bind to LPS directly and regulate PR1 expression.	lipid-binding serum glycoprotein family protein;(source:Araport11)
AT1G28130.2	protein_coding	Auxin-responsive GH3 family protein	Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.	Auxin-responsive GH3 family protein;(source:Araport11)
AT1G28100.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G49280.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: AGT);(source:Araport11, TAIR10)
AT1G49460.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT1G49340.2	protein_coding	Phosphatidylinositol 3- and 4-kinase family protein	Encodes a phosphatidylinositol 4-kinase that is expressed in inflorescences and shoots.	Phosphatidylinositol 3- and 4-kinase family protein;(source:Araport11)
AT1G30210.2	protein_coding	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24	TCP family protein involved in heterochronic regulation of leaf differentiation.	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24;(source:Araport11)
AT1G53410.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
AT1G53220.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: TAT);(source:Araport11, TAIR10)
AT1G06480.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT1G06610.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT1G06650.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase The mRNA is cell-to-cell mobile.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G34120.2	protein_coding	inositol polyphosphate 5-phosphatase I	Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.	inositol polyphosphate 5-phosphatase I;(source:Araport11)
AT1G12015.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT1G11905.1	protein_coding	B-cell receptor-associated protein 31-like 		B-cell receptor-associated protein 31-like protein;(source:Araport11)
AT1G11850.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G12080.2	protein_coding	Vacuolar calcium-binding protein-related		Vacuolar calcium-binding protein-like protein;(source:Araport11)
AT1G11860.2	protein_coding	Glycine cleavage T-protein family		Glycine cleavage T-protein family;(source:Araport11)
AT1G11870.2	protein_coding	Seryl-tRNA synthetase	Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	Seryl-tRNA synthetase;(source:Araport11)
AT1G11930.2	protein_coding	Predicted pyridoxal phosphate-dependent enzyme, YBL036C type		Putative pyridoxal phosphate-dependent enzyme, YBL036C type;(source:Araport11)
AT1G11840.3	protein_coding	glyoxalase I homolog	Encodes Ni+ dependent glyoxalase I homolog ATGLX1.	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein;(source:Araport11)
AT1G11840.2	protein_coding	glyoxalase I homolog	Encodes Ni+ dependent glyoxalase I homolog ATGLX1.	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein;(source:Araport11)
AT1G67800.2	protein_coding	Copine (Calcium-dependent phospholipid-binding protein) family		Copine (Calcium-dependent phospholipid-binding protein) family;(source:Araport11)
AT1G40074.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.9e-56 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G40073.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G40071.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.9e-10 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G40078.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT1G40075.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 4.1e-155 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT1G40072.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G40077.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-256 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G48760.2	protein_coding	delta-adaptin	Encodes the putative delta subunit of the AP(adaptor protein)-3  complex and plays a role in vacuolar function.	delta-adaptin;(source:Araport11)
AT1G50440.2	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G17660.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT1G17670.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT1G17720.2	protein_coding	Protein phosphatase 2A, regulatory subunit PR55	type 2A protein serine/threonine phosphatase 55 kDa B	Protein phosphatase 2A, regulatory subunit PR55;(source:Araport11)
AT1G17680.2	protein_coding	tetratricopeptide repeat (TPR)-containing protein		tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT1G48410.2	protein_coding	Stabilizer of iron transporter SufD / Polynucleotidyl transferase	Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs.  There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC).  Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the  regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus.	Stabilizer of iron transporter SufD / Polynucleotidyl transferase;(source:Araport11)
AT1G03090.2	protein_coding	methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)	MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.	methylcrotonyl-CoA carboxylase alpha chain;(source:Araport11)
AT1G07100.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: TAT);(source:Araport11, TAIR10)
AT1G06960.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Similar to U2B'. Functions in  cold stress induced alternative splicing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G69510.2	protein_coding	cAMP-regulated phosphoprotein 19-related protein		cAMP-regulated phosphoprotein 19-related protein;(source:Araport11)
AT1G69530.3	protein_coding	expansin A1	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A1;(source:Araport11)
AT1G69530.2	protein_coding	expansin A1	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A1;(source:Araport11)
AT1G14710.2	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G75570.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT1G75740.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: CGT);(source:Araport11, TAIR10)
AT1G75650.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: CTC);(source:Araport11, TAIR10)
AT5G50915.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G50950.2	protein_coding	FUMARASE 2	Encodes a fumarase enzyme initially shown to be in the mitochondria through proteomic studies but later shown to be present in the cytosol using an RFP fluorescent protein tag. It appears to be important for the accumulation of fumarate from malate in leaves in the light, and helps to promote nitrogen assimilation under high nitrogen conditions. It does not appear to be necessary for lipid metabolism and seedling growth. Inhibition of fumarate accumulation results in an overall shift in the cold response of leaves, with a complete inhibition of cold acclimation of photosynthesis.	FUMARASE 2;(source:Araport11)
AT5G50995.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT5G51055.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT5G50200.3	protein_coding	nitrate transmembrane transporters	Wound-responsive gene 3 (WR3).  Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.	nitrate transmembrane transporter;(source:Araport11)
AT5G50200.2	protein_coding	nitrate transmembrane transporters	Wound-responsive gene 3 (WR3).  Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.	nitrate transmembrane transporter;(source:Araport11)
AT5G49525.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G50805.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: TTG);(source:Araport11, TAIR10)
AT5G49435.1	pre_trna	pre-tRNA		pre-tRNA tRNA-His (anticodon: GTG);(source:Araport11, TAIR10)
AT5G67030.2	protein_coding	zeaxanthin epoxidase (ZEP) (ABA1)	Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.	zeaxanthin epoxidase (ZEP) (ABA1);(source:Araport11)
AT5G43560.2	protein_coding	TRAF-like superfamily protein	Encodes MUSE14, a TRAF domain protein. Regulates the turnover of nucleotide-binding domain and leucine-rich repeat-containing (NLR) immune receptors SNC1 and RPS2. Loss of both MUSE13 and MUSE14 leads to enhanced pathogen resistance, NLR accumulation, and autoimmunity. In addition, MUSE13/14 physically interact with ATG6 and appear to regulate ATG6 ubiquitination and thus formation of autophagosomes.	TRAF-like superfamily protein;(source:Araport11)
AT5G43535.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT5G45280.2	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT5G45340.2	protein_coding	cytochrome P450, family 707, subfamily A, polypeptide 3	Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor).	cytochrome P450, family 707, subfamily A, polypeptide 3;(source:Araport11)
AT5G67580.2	protein_coding	Homeodomain-like/winged-helix DNA-binding family protein	Encodes a telomeric DNA binding protein and Single Myb Histone (SMH) gene family member. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.	Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
AT5G44310.2	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT5G44283.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT5G44375.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: TAC);(source:Araport11, TAIR10)
AT5G44286.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT5G36170.3	protein_coding	high chlorophyll fluorescent 109	Required for normal processing of polycistronic plastidial transcripts	high chlorophyll fluorescent 109;(source:Araport11)
AT5G36170.2	protein_coding	high chlorophyll fluorescent 109	Required for normal processing of polycistronic plastidial transcripts	high chlorophyll fluorescent 109;(source:Araport11)
AT5G13890.2	protein_coding	Family of unknown function (DUF716) 		plant viral-response family protein (DUF716);(source:Araport11)
AT5G13890.3	protein_coding	Family of unknown function (DUF716) 		plant viral-response family protein (DUF716);(source:Araport11)
AT5G13980.2	protein_coding	Glycosyl hydrolase family 38 protein		Glycosyl hydrolase family 38 protein;(source:Araport11)
AT5G13845.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT5G14035.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT5G61770.2	protein_coding	PETER PAN-like protein	A single-copy gene  encoding a 346 aa protein with a single Brix domain. Similar to yeast ribosome biogenesis proteins Ssf1/2.	PETER PAN-like protein;(source:Araport11)
AT5G61150.2	protein_coding	leo1-like family protein	Encodes highly hydrophilic protein involved in positively regulating FLC expression.  Mutants are early flowering and show a loss of FLC expression in the absence of cold. Member of PAF-C complex.	leo1-like family protein;(source:Araport11)
AT5G61250.2	protein_coding	glucuronidase 1	Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-&#946;-GlcNAc attachment sites and serine-, threonine- and  tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted  (WoLF PSORT program) to be secreted.	glucuronidase 1;(source:Araport11)
AT5G10710.2	protein_coding			centromere protein O;(source:Araport11)
AT5G50580.2	protein_coding	SUMO-activating enzyme 1B	Encodes one of the two subunits of the SUMO activation enzyme required during sumolation.  Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.	SUMO-activating enzyme 1B;(source:Araport11)
AT5G50570.2	protein_coding	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein		Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein;(source:Araport11)
AT5G42900.2	protein_coding	cold regulated gene 27		cold regulated protein 27;(source:Araport11)
AT5G55000.2	protein_coding	potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein	FH protein interacting protein FIP2	potassium channel tetramerization domain-containing protein / pentapeptide repeat-containing protein;(source:Araport11)
AT5G54865.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
AT5G07680.2	protein_coding	NAC domain containing protein 80		NAC domain containing protein 80;(source:Araport11)
AT5G07625.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAA);(source:Araport11, TAIR10)
AT5G07675.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT5G41700.4	protein_coding	ubiquitin conjugating enzyme 8	One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 The mRNA is cell-to-cell mobile.	ubiquitin conjugating enzyme 8;(source:Araport11)
AT5G41700.3	protein_coding	ubiquitin conjugating enzyme 8	One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 The mRNA is cell-to-cell mobile.	ubiquitin conjugating enzyme 8;(source:Araport11)
AT5G41670.2	protein_coding	6-phosphogluconate dehydrogenase family protein		6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT5G41675.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
AT5G41605.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAA);(source:Araport11, TAIR10)
AT5G63620.2	protein_coding	GroES-like zinc-binding alcohol dehydrogenase family protein	Encodes an oxidoreductase involved in transducing the perception of E-2-hexenal, which changes the redox status of the mitochondria.	GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT5G47820.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfibrils and reduced mechanical strength of fibers.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G47720.2	protein_coding	Thiolase family protein	Encodes a functional acetoacetyl-CoA thiolase that is functionally redundant with AACT2.  Loss-of-function mutants show no apparent growth phenotypes.	Thiolase family protein;(source:Araport11)
AT5G56365.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT5G58330.2	protein_coding	lactate/malate dehydrogenase family protein		lactate/malate dehydrogenase family protein;(source:Araport11)
AT5G58320.2	protein_coding	Kinase interacting (KIP1-like) family protein	Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the tonoplast membrane. It is expressed in the epidermis of the root meristem and the early expansion zone.	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT5G46160.2	protein_coding	Ribosomal protein L14p/L23e family protein		Ribosomal protein L14p/L23e family protein;(source:Araport11)
AT5G46150.2	protein_coding	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein		LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein;(source:Araport11)
AT5G46110.2	protein_coding	Glucose-6-phosphate/phosphate translocator-related	Encodes a chloroplast triose phosphate / 3-phosphoglycerate translocator that transports triose phosphates derived from the Calvin cycle in the stroma to the cytosol for use in sucrose synthesis and other biosynthetic processes. A tpt mutant has altered acclimation responses. The mRNA is cell-to-cell mobile.	Glucose-6-phosphate/phosphate translocator-like protein;(source:Araport11)
AT5G46105.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT5G18005.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT5G18015.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT5G18085.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
AT5G55100.2	protein_coding	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G55132.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G56150.2	protein_coding	ubiquitin-conjugating enzyme 30		ubiquitin-conjugating enzyme 30;(source:Araport11)
AT5G56190.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G63190.2	protein_coding	MA3 domain-containing protein	Encodes a member of the MRF (MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR) gene family under TOR control that is transcriptionally induced by dark and starvation. MRF1 can be phosphorylated in vitro by S6K1 and S6K2.	MA3 domain-containing protein;(source:Araport11)
AT5G63090.4	protein_coding	Lateral organ boundaries (LOB) domain family protein	Involved in lateral organ development	Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT5G63090.3	protein_coding	Lateral organ boundaries (LOB) domain family protein	Involved in lateral organ development	Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT5G63090.2	protein_coding	Lateral organ boundaries (LOB) domain family protein	Involved in lateral organ development	Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT5G55630.2	protein_coding	Outward rectifying potassium channel protein	Encodes AtTPK1 (KCO1), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK1 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. Voltage-independent and Ca2+-activated K+ channel. Activated by 14-3-3 proteins.	Outward rectifying potassium channel protein;(source:Araport11)
AT5G22770.3	protein_coding	alpha-adaptin		alpha-adaptin;(source:Araport11)
AT5G22770.2	protein_coding	alpha-adaptin		alpha-adaptin;(source:Araport11)
AT5G22650.2	protein_coding	histone deacetylase 2B	Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.	histone deacetylase 2B;(source:Araport11)
AT5G54250.2	protein_coding	cyclic nucleotide-gated cation channel 4	member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.	cyclic nucleotide-gated cation channel 4;(source:Araport11)
AT5G54375.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT5G54365.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT5G48000.3	protein_coding	cytochrome P450, family 708, subfamily A, polypeptide 2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	cytochrome P450, family 708, subfamily A, polypeptide 2;(source:Araport11)
AT5G48000.2	protein_coding	cytochrome P450, family 708, subfamily A, polypeptide 2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	cytochrome P450, family 708, subfamily A, polypeptide 2;(source:Araport11)
AT5G03775.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCT);(source:Araport11, TAIR10)
AT5G41100.2	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G41040.2	protein_coding	HXXXD-type acyl-transferase family protein	Encodes a feruloyl-CoA transferase required for suberin synthesis. Has feruloyl-CoA-dependent feruloyl transferase activity towards substrates with a primary alcohol.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT5G61410.2	protein_coding	D-ribulose-5-phosphate-3-epimerase	Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA	D-ribulose-5-phosphate-3-epimerase;(source:Araport11)
AT5G61310.2	protein_coding	Cytochrome c oxidase subunit Vc family protein		Cytochrome c oxidase subunit Vc family protein;(source:Araport11)
AT5G61420.2	protein_coding	myb domain protein 28	Encodes a nuclear localized member of the MYB transcription factor family. Involved in positive regulation of aliphatic glucosinolate biosynthesis.Expression is induced by touch, wounding and glucose.	myb domain protein 28;(source:Araport11)
AT5G61445.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT5G61345.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT5G61455.1	small_nuclear_rna	U2.7; snRNA		U2-7;(source:Araport11)
AT5G51410.2	protein_coding	LUC7 N_terminus domain-containing protein		LUC7 N terminus domain-containing protein;(source:Araport11)
AT5G51460.2	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G53160.2	protein_coding	regulatory components of ABA receptor 3	Encodes RCAR3, a regulatory component of ABA receptor.  Interacts with protein phosphatase 2Cs ABI1 and ABI2.  Stimulates ABA signaling. The mRNA is cell-to-cell mobile.	regulatory components of ABA receptor 3;(source:Araport11)
AT5G53120.3	protein_coding	spermidine synthase 3	encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.	spermidine synthase 3;(source:Araport11)
AT5G53120.2	protein_coding	spermidine synthase 3	encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.	spermidine synthase 3;(source:Araport11)
AT5G63870.3	protein_coding	serine/threonine phosphatase 7	Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling.	serine/threonine phosphatase 7;(source:Araport11)
AT5G63870.2	protein_coding	serine/threonine phosphatase 7	Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling.	serine/threonine phosphatase 7;(source:Araport11)
AT5G06440.2	protein_coding			polyketide cyclase/dehydrase/lipid transport superfamily protein;(source:Araport11)
AT5G06420.2	protein_coding	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein		Zinc finger (CCCH-type/C3HC4-type RING finger) family protein;(source:Araport11)
AT5G64200.2	protein_coding	ortholog of human splicing factor SC35	encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks.	serine/arginine-rich splicing factor-like protein, putative;(source:Araport11)
AT5G40840.2	protein_coding	Rad21/Rec8-like family protein	Cohesion family protein SYN2 (SYN2). Plays a role in somatic DNA double strand break damage repair.	Rad21/Rec8-like family protein;(source:Araport11)
AT5G56975.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: CAC);(source:Araport11, TAIR10)
AT5G48230.2	protein_coding	acetoacetyl-CoA thiolase 2	Encodes an acetoacetyl-CoA thiolase that generates the bulk of the acetoacetyl-CoA precursor needed for the cytosolic localized, mevalonate-derived isoprenoids biosynthetic pathway.  Loss-of-function mutants are embryo lethal.	acetoacetyl-CoA thiolase 2;(source:Araport11)
AT5G39660.2	protein_coding	cycling DOF factor 2	Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.	cycling DOF factor 2;(source:Araport11)
AT5G56745.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT5G42020.2	protein_coding	Heat shock protein 70 (Hsp 70) family protein	Luminal binding protein (BiP2) involved in polar nuclei fusion during proliferation of endosperm nuclei.	Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT5G35605.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: CCT);(source:Araport11, TAIR10)
AT5G48400.2	protein_coding	Glutamate receptor family protein	member of Putative ligand-gated ion channel subunit family	Glutamate receptor family protein;(source:Araport11)
AT5G48465.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
AT5G05657.1	protein_coding			late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G05795.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: CCT);(source:Araport11, TAIR10)
AT5G51910.2	protein_coding	TCP family transcription factor 		TCP family transcription factor;(source:Araport11)
AT5G54080.2	protein_coding	homogentisate 1,2-dioxygenase	Encodes a homogentisate 1,2-dioxygenase that can convert homogentisate to malylacetoacetate and is likely to be involved in tyrosine catabolism.	homogentisate 1,2-dioxygenase;(source:Araport11)
AT5G54075.1	small_nucleolar_rna	U3D; snoRNA	U3 small nucleolar RNA	U3D,snoRNA;(source:Araport11)
AT5G23210.2	protein_coding	serine carboxypeptidase-like 34		serine carboxypeptidase-like 34;(source:Araport11)
AT5G39785.2	protein_coding	Protein of unknown function (DUF1666)		hypothetical protein (DUF1666);(source:Araport11)
AT5G17310.2	protein_coding	UDP-glucose pyrophosphorylase 2		UDP-glucose pyrophosphorylase 2;(source:Araport11)
AT5G63440.2	protein_coding	Protein of unknown function (DUF167)	Encodes a single copy protein in Arabidopsis containing a DUF167 domain that is conserved in eukaryotes.  Genetically CSU suppresses mutations in COP1.  In vitro, it interacts with CACTIN and in vivo with CCA1. CSU4 promotes photomorphogenesis via negative regulation of CCA1 and PIF4 expression.	hypothetical protein (DUF167);(source:Araport11)
AT5G36925.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G44120.3	protein_coding	RmlC-like cupins superfamily protein	Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	RmlC-like cupins superfamily protein;(source:Araport11)
AT5G44120.2	protein_coding	RmlC-like cupins superfamily protein	Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	RmlC-like cupins superfamily protein;(source:Araport11)
AT5G40945.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: AAG);(source:Araport11, TAIR10)
AT5G59880.2	protein_coding	actin depolymerizing factor 3	Encodes actin depolymerizing factor 3 (ADF3).	actin depolymerizing factor 3;(source:Araport11)
AT5G59950.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G59945.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT5G65495.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G65430.2	protein_coding	general regulatory factor 8	member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1	general regulatory factor 8;(source:Araport11)
AT5G53045.1	protein_coding			transcription factor;(source:Araport11)
AT5G59210.2	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT5G59160.2	protein_coding	type one serine/threonine protein phosphatase 2	Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.	type one serine/threonine protein phosphatase 2;(source:Araport11)
AT5G53620.2	protein_coding			RNA polymerase II degradation factor;(source:Araport11)
AT5G53490.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	thylakoid lumenal 17.4 kDa protein, chloroplast, identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}. Putative pentapeptide protein.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G40580.2	protein_coding	20S proteasome beta subunit PBB2	Encodes 20S proteasome beta subunit PBB2 (PBB2).	20S proteasome beta subunit PBB2;(source:Araport11)
AT5G40545.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT5G47455.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G47455.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G47455.4	protein_coding			hypothetical protein;(source:Araport11)
AT5G47620.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G37380.2	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G37370.2	protein_coding	PRP38 family protein	encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	PRP38 family protein;(source:Araport11)
AT5G37350.2	protein_coding	Serine/threonine-protein kinase Rio1		Serine/threonine-protein kinase Rio1;(source:Araport11)
AT5G43270.2	protein_coding	squamosa promoter binding protein-like 2	member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors.    In conjunction with SPL10 and SPL11, SPL2 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.	squamosa promoter binding protein-like 2;(source:Araport11)
AT5G05610.2	protein_coding	alfin-like 1	Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 1;(source:Araport11)
AT5G05550.2	protein_coding	sequence-specific DNA binding transcription factors	Encodes trihelix-domain transcription factor VFP5. Interacts with agrobacterium virulence protein VirF.	sequence-specific DNA binding transcription factor;(source:Araport11)
AT5G24320.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G24290.2	protein_coding	Vacuolar iron transporter (VIT) family protein		Vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT5G37510.2	protein_coding	NADH-ubiquinone dehydrogenase, mitochondrial, putative	Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I).  The protein has been isolated in the male gametophyte. The mRNA is cell-to-cell mobile.	NADH-ubiquinone dehydrogenase;(source:Araport11)
AT5G06839.1	protein_coding	bZIP transcription factor family protein		bZIP transcription factor family protein;(source:Araport11)
AT5G06685.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT5G46430.2	protein_coding	Ribosomal protein L32e		Ribosomal protein L32e;(source:Araport11)
AT5G46250.2	protein_coding	RNA-binding protein		RNA-binding protein;(source:Araport11)
AT5G46325.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: TAG);(source:Araport11, TAIR10)
AT5G46315.1	small_nuclear_rna	U6-29; snRNA		U6-29;(source:Araport11)
AT5G40395.1	small_nuclear_rna	U6acat; snRNA		U6acat;(source:Araport11)
AT5G62890.2	protein_coding	Xanthine/uracil permease family protein		Xanthine/uracil permease family protein;(source:Araport11)
AT5G43740.2	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G58540.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G58495.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: CGA);(source:Araport11, TAIR10)
AT5G16290.2	protein_coding	VALINE-TOLERANT 1	Encodes a regulatory subunit of acetohydroxy acid synthase (AHAS), the &#64257;rst committed enzyme in the branched chain amino acid biosynthesis pathway.	VALINE-TOLERANT 1;(source:Araport11)
AT5G16450.2	protein_coding	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase		Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase;(source:Araport11)
AT5G16510.2	protein_coding	Alpha-1,4-glucan-protein synthase family protein	RGP5 is a member of the reversably-glycosylated family of proteins. Analyses using tagged RGP5 suggest that it is present in the cytosol and in association with the Golgi apparatus. Recombinant RGP5 does not have UDP-arabinose mutase activity based on an in vitro assay even though the related RGP1, RGP2, and RGP3 proteins do have activity in the same assay. RGP5 can form complexes with RGP1 and RGP2.	Alpha-1,4-glucan-protein synthase family protein;(source:Araport11)
AT5G16375.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10)
AT5G47435.2	protein_coding	formyltetrahydrofolate deformylase, putative	encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.	formyltetrahydrofolate deformylase;(source:Araport11)
AT5G47445.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.6e-84 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G23720.2	protein_coding	dual specificity protein phosphatase family protein	Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1).  One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells.  A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling.	dual specificity protein phosphatase family protein;(source:Araport11)
AT5G23665.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: TTG);(source:Araport11, TAIR10)
AT5G65210.2	protein_coding	bZIP transcription factor family protein	Encodes TGA1, a redox-controlled regulator of systemic acquired resistance.  TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.	bZIP transcription factor family protein;(source:Araport11)
AT5G45745.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
AT5G45715.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
AT5G54600.2	protein_coding	Translation protein SH3-like family protein		Translation protein SH3-like family protein;(source:Araport11)
AT5G54650.2	protein_coding	formin homology5	Encodes a protein with similarity to formins that is involved in cytokinesis. Loss of function mutations exhibit delayed cellularization during endosperm development.  FH5 is expressed in the endosperm and the protein localizes to the cell plate.  FH5 was shown to be a maternally expressed imprinted gene.	formin homology5;(source:Araport11)
AT5G18240.2	protein_coding	myb-related protein 1	Encodes MYR1 (MYR1).	myb-related protein 1;(source:Araport11)
AT5G57700.2	protein_coding	BNR/Asp-box repeat family protein		BNR/Asp-box repeat family protein;(source:Araport11)
AT5G22860.2	protein_coding	Serine carboxypeptidase S28 family protein		Serine carboxypeptidase S28 family protein;(source:Araport11)
AT5G57450.2	protein_coding	homolog of X-ray repair cross complementing 3 (XRCC3)	Involved in homologous recombination and recombinational repair, mutants are sterile, hypersensitive to DNA crosslinking agents, show aberrant meiosis with extensive chromosome fragmentation	homolog of X-ray repair cross complementing 3 (XRCC3);(source:Araport11)
AT5G52040.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes an arginine/serine-rich splicing factor. Transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS41 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G64240.2	protein_coding	metacaspase 3	Encodes a type I metacaspase. Two Arabidopsis metacaspases, AT1G02170 (MC1) and AT4G25110 (MC2)  antagonistically control programmed cell death in Arabidopsis. MC1 is a positive regulator of cell death and requires conserved caspase-like putative catalytic residues for its function. MC2 negatively regulates cell death. This function is independent of the putative catalytic residues.  A third type I Arabidopsis metacaspase is MC3 (AT5g64240).	metacaspase 3;(source:Araport11)
AT5G64250.2	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT5G64360.3	protein_coding	Chaperone DnaJ-domain superfamily protein	EIP9 interacts with EMF1 to regulate flowering. It functions partially redundantly with SDJ2 and SDJ3 and interacts with SUVH1 and SUVH3 to form a SUVH-SDJ complex. The complex binds promoters with DNA methylation and mediates transcriptional activation of promoter methylated genes.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G64360.2	protein_coding	Chaperone DnaJ-domain superfamily protein	EIP9 interacts with EMF1 to regulate flowering. It functions partially redundantly with SDJ2 and SDJ3 and interacts with SUVH1 and SUVH3 to form a SUVH-SDJ complex. The complex binds promoters with DNA methylation and mediates transcriptional activation of promoter methylated genes.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G60980.2	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT5G61020.2	protein_coding	evolutionarily conserved C-terminal region 3		evolutionarily conserved C-terminal region 3;(source:Araport11)
AT5G60963.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: CGC);(source:Araport11, TAIR10)
AT5G60966.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: CGT);(source:Araport11, TAIR10)
AT5G66675.1	protein_coding	Protein of unknown function (DUF677)		transmembrane protein, putative (DUF677);(source:Araport11)
AT5G55550.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G55505.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT5G62000.2	protein_coding	auxin response factor 2	Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation. The mRNA is cell-to-cell mobile.	auxin response factor 2;(source:Araport11)
AT5G62090.2	protein_coding	SEUSS-like 2	Encodes a protein that functions with LUH to promote Al binding to the root cell wall.	SEUSS-like 2;(source:Araport11)
AT5G62100.2	protein_coding	BCL-2-associated athanogene 2	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	BCL-2-associated athanogene 2;(source:Araport11)
AT5G62165.2	protein_coding	AGAMOUS-like 42	Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT5G59780.2	protein_coding	myb domain protein 59	Encodes a putative transcription factor (MYB59). In roots it  is involved in K+/NO3- transport and expression of the NPF7.3 transporter.	myb domain protein 59;(source:Araport11)
AT5G59780.3	protein_coding	myb domain protein 59	Encodes a putative transcription factor (MYB59). In roots it  is involved in K+/NO3- transport and expression of the NPF7.3 transporter.	myb domain protein 59;(source:Araport11)
AT5G57930.2	protein_coding	Arabidopsis thaliana protein of unknown function (DUF794)	ACCUMULATION OF PHOTOSYSTEM ONE 2	APO RNA-binding protein (DUF794);(source:Araport11)
AT5G57940.2	protein_coding	cyclic nucleotide gated channel 5	Encodes a cyclic GMP activated Ca2+-permeable cation channel in the plasma membrane of guard cells.	cyclic nucleotide gated channel 5;(source:Araport11)
AT5G57860.3	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G57860.2	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G57870.2	protein_coding	MIF4G domain-containing protein / MA3 domain-containing protein	Encodes a putative eukaryotic translation initiation factor The mRNA is cell-to-cell mobile.	MIF4G domain-containing protein / MA3 domain-containing protein;(source:Araport11)
AT5G57885.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
AT5G64680.2	protein_coding			mediator-associated protein;(source:Araport11)
AT5G64560.2	protein_coding	magnesium transporter 9	Transmembrane magnesium transporter that is located in plasma membrane of microspores to take up Mg from the locule. One of 9 family members.	magnesium transporter 9;(source:Araport11)
AT5G66930.2	protein_coding			meiotically up-regulated protein;(source:Araport11)
AT5G41750.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G60580.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G60580.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G60600.2	protein_coding	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	Encodes a chloroplast-localized  hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP).  The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP<sup>+</sup> reductase. The mRNA is cell-to-cell mobile.	4-hydroxy-3-methylbut-2-enyl diphosphate synthase;(source:Araport11)
AT5G04940.2	protein_coding	SU(VAR)3-9 homolog 1	Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. SUVH1 has been shown to have a preference for binding methylated DNA.	SU(VAR)3-9 homolog 1;(source:Araport11)
AT5G04830.2	protein_coding	Nuclear transport factor 2 (NTF2) family protein		Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT5G57110.2	protein_coding	autoinhibited Ca2+ -ATPase, isoform 8	Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.	autoinhibited Ca2+ -ATPase, isoform 8;(source:Araport11)
AT5G57180.2	protein_coding	chloroplast import apparatus 2	Transcription regulator responsible for  specific upregulation of the translocon genes  atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.	chloroplast import apparatus 2;(source:Araport11)
AT5G39535.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: AGG);(source:Araport11, TAIR10)
AT5G60640.2	protein_coding	PDI-like 1-4	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.	PDI-like 1-4;(source:Araport11)
AT5G17710.2	protein_coding	Co-chaperone GrpE family protein	Chloroplast GrpE protein involved in chloroplastic response to heat stress and the correct oligomerization of the photosynthesis-related LHCII complex.	Co-chaperone GrpE family protein;(source:Araport11)
AT5G17760.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G51230.2	protein_coding	VEFS-Box of polycomb protein	Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.	VEFS-Box of polycomb protein;(source:Araport11)
AT5G51180.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G51300.2	protein_coding	splicing factor-related	Encodes a nuclear localized splicing factor homolog that is involved in alternative splicing of some mRNAs.	splicing factor-like protein;(source:Araport11)
AT5G22460.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G22315.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gln (anticodon: CTG);(source:Araport11, TAIR10)
AT5G43470.2	protein_coding	Disease resistance protein (CC-NBS-LRR class) family	Confers resistance to Peronospora parasitica. In arabidopsis ecotype Dijon-17, HRT-mediated signaling is dependent on light for the induction of  hypersensitive response and resistance to turnip crinkle virus.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G43380.2	protein_coding	type one serine/threonine protein phosphatase 6	encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.	type one serine/threonine protein phosphatase 6;(source:Araport11)
AT5G43455.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT5G55920.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a homolog of the S. cerevisiae Nop2 that is involved in ribosome biogenesis and plays a role on organ size control by promoting cell proliferation and preventing compensation in normal leaf development.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G38155.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: CAC);(source:Araport11, TAIR10)
AT5G13800.2	protein_coding	pheophytinase	Encodes a pheophytinase that is involved in chlorophyll breakdown. Its transcript levels increase during senescence and pph-1 mutants have a stay-green phenotype.	pheophytinase;(source:Araport11)
AT5G38380.2	protein_coding			zinc transporter;(source:Araport11)
AT5G64940.2	protein_coding	ABC2 homolog 13	ABC1K8 is a member of an atypical protein kinase family that is induced by heavy metals. Loss of function mutations affect the metabolic profile of chloroplast lipids. It appears to function along with ABC1K7 in mediating lipid membrane changes in response to stress. The mRNA is cell-to-cell mobile.	ABC2 homolog 13;(source:Araport11)
AT5G65010.2	protein_coding	asparagine synthetase 2	Encodes asparagine synthetase (ASN2).	asparagine synthetase 2;(source:Araport11)
AT5G39895.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT5G09975.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: AAG);(source:Araport11, TAIR10)
AT5G23090.2	protein_coding	nuclear factor Y, subunit B13		nuclear factor Y, subunit B13;(source:Araport11)
AT5G23090.3	protein_coding	nuclear factor Y, subunit B13		nuclear factor Y, subunit B13;(source:Araport11)
AT5G55970.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G58595.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT5G17410.2	protein_coding	Spc97 / Spc98 family of spindle pole body (SBP) component		Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT5G21125.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G01365.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: AGC);(source:Araport11, TAIR10)
AT5G64520.2	protein_coding	homolog of X-ray repair cross complementing 2 (XRCC2)	Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.	homolog of X-ray repair cross complementing 2 (XRCC2);(source:Araport11)
AT5G64460.2	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT5G64470.2	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT5G25475.2	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G25470.2	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G25625.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT5G25585.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAA);(source:Araport11, TAIR10)
AT5G14550.2	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G14660.2	protein_coding	peptide deformylase 1B	Encodes a peptide deformylase PDF1B.  The crystal structure has been determined at a resolution of 0.24 nm (Biochem J, 2008, vol 413:417-427).	peptide deformylase 1B;(source:Araport11)
AT5G19015.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 8.7e-16 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT5G19090.2	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G19095.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT5G26180.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G04430.2	protein_coding	binding to TOMV RNA 1L (long form)	Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication.	binding to TOMV RNA 1L (long form);(source:Araport11)
AT5G18620.2	protein_coding	chromatin remodeling factor17	Encodes a member of the A. thaliana imitation switch (AtISWI) subfamily of chromatin remodeling factors. Double mutation in CHR17 and CHR11 results in the loss of the evenly spaced nucleosome pattern in gene bodies, but does not affect nucleosome density.	chromatin remodeling factor17;(source:Araport11)
AT5G18630.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G18755.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT5G02470.2	protein_coding	Transcription factor DP	core cell cycle genes	Transcription factor DP;(source:Araport11)
AT5G02470.3	protein_coding	Transcription factor DP	core cell cycle genes	Transcription factor DP;(source:Araport11)
AT5G02290.2	protein_coding	Protein kinase superfamily protein	Encodes a candidate protein kinase NAK that is similar to the oncogenes met and abl.	Protein kinase superfamily protein;(source:Araport11)
AT5G02435.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT5G02385.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Lys (anticodon: CTT);(source:Araport11, TAIR10)
AT5G04800.2	protein_coding	Ribosomal S17 family protein		Ribosomal S17 family protein;(source:Araport11)
AT5G27715.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
AT5G20730.2	protein_coding	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related	Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses.  Together with AUX19, it is  involved in the response to ethylene.  In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein;(source:Araport11)
AT5G20730.3	protein_coding	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related	Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses.  Together with AUX19, it is  involved in the response to ethylene.  In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein;(source:Araport11)
AT5G20720.2	protein_coding	chaperonin 20	Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES.	chaperonin 20;(source:Araport11)
AT5G26000.2	protein_coding	thioglucoside glucohydrolase 1	member of Glycoside Hydrolase Family 1. encodes one of two known functional myrosinase enzymes in Arabidopsis. The enzyme catalyzes the hydrolysis of glucosinolates into compounds that are toxic to various microbes and herbivores.	thioglucoside glucohydrolase 1;(source:Araport11)
AT5G25980.2	protein_coding	glucoside glucohydrolase 2	Myrosinase (thioglucoside glucohydrolase) gene involved in glucosinoloate metabolism. The mRNA is cell-to-cell mobile.	glucoside glucohydrolase 2;(source:Araport11)
AT5G26040.2	protein_coding	histone deacetylase 2	Class III RPD3 type protein. Encodes HDA2, a member of the histone deacetylase family proteins.	histone deacetylase 2;(source:Araport11)
AT5G15460.2	protein_coding	membrane-anchored ubiquitin-fold protein 2		membrane-anchored ubiquitin-fold protein 2;(source:Araport11)
AT5G15500.2	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT5G15610.2	protein_coding	Proteasome component (PCI) domain protein		Proteasome component (PCI) domain protein;(source:Araport11)
AT5G16150.2	protein_coding	plastidic GLC translocator	Encodes a putative plastidic glucose transporter.	plastidic GLC translocator;(source:Araport11)
AT5G08160.2	protein_coding	serine/threonine protein kinase 3	Encodes a serine/threonine protein kinase.	serine/threonine protein kinase 3;(source:Araport11)
AT5G08141.1	protein_coding	basic leucine-zipper 75		basic leucine-zipper 75;(source:Araport11)
AT5G08139.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G08075.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ala (anticodon: CGC);(source:Araport11, TAIR10)
AT5G02505.1	pre_trna	pre-tRNA		pre-tRNA tRNA-His (anticodon: GTG);(source:Araport11, TAIR10)
AT5G02725.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: CGA);(source:Araport11, TAIR10)
AT5G02615.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: TCG);(source:Araport11, TAIR10)
AT5G34412.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 8.7e-05 P-value blast match to GB:BAA84457 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902444|dbj|BAA84457.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G34394.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.2e-56 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT5G34376.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.4e-31 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G34431.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G35207.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to simiar to ribosomal protein, blastp match of 45%25 identity and 6.7e-47 P-value to GP|19571128|dbj|BAB86552.1||AP003566 simiar to ribosomal protein {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT5G35210.2	protein_coding	metalloendopeptidases;zinc ion binding;DNA binding	Encodes a chloroplast envelope-bound plant homeodomain (PHD) transcription factor with transmembrane domains that functions in multiple retrograde signal pathways. The proteolytic cleavage of PTM occurs in response to retrograde signals and amino-terminal PTM accumulates in the nucleus, where it activates ABI4 transcription in a PHD-dependent manner associated with histone modifications.	PHD type transcription factor with transmembrane domain protein (PTM);(source:Araport11)
AT5G29560.1	protein_coding	caleosin-related family protein		caleosin-related family protein;(source:Araport11)
AT5G07135.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT5G18590.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G07370.2	protein_coding	inositol polyphosphate kinase 2 alpha	Encodes inositol polyphosphate kinase, which phosphorylates inositol 1,4,5-triphosphate and inositol 1,3,4,5-tetrakisphosphate to generate inositol 1,3,4,5,6-pentakisphosphate. Acts redundantly with ATIPK2beta during pollen   development, pollen tube guidance and embryogenesis. The mRNA is cell-to-cell mobile.	inositol polyphosphate kinase 2 alpha;(source:Araport11)
AT5G07370.3	protein_coding	inositol polyphosphate kinase 2 alpha	Encodes inositol polyphosphate kinase, which phosphorylates inositol 1,4,5-triphosphate and inositol 1,3,4,5-tetrakisphosphate to generate inositol 1,3,4,5,6-pentakisphosphate. Acts redundantly with ATIPK2beta during pollen   development, pollen tube guidance and embryogenesis. The mRNA is cell-to-cell mobile.	inositol polyphosphate kinase 2 alpha;(source:Araport11)
AT5G07540.2	protein_coding	glycine-rich protein 16	encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12).	glycine-rich protein 16;(source:Araport11)
AT5G07315.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT5G09270.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G09240.2	protein_coding	ssDNA-binding transcriptional regulator		ssDNA-binding transcriptional regulator;(source:Araport11)
AT5G09230.4	protein_coding	sirtuin 2	Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).	sirtuin 2;(source:Araport11)
AT5G09230.2	protein_coding	sirtuin 2	Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).	sirtuin 2;(source:Araport11)
AT5G09230.3	protein_coding	sirtuin 2	Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).	sirtuin 2;(source:Araport11)
AT5G12840.2	protein_coding	nuclear factor Y, subunit A1	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	nuclear factor Y, subunit A1;(source:Araport11)
AT5G34940.3	protein_coding	glucuronidase 3	The protein is predicted  (WoLF PSORT program) to be membrane-associated.	glucuronidase 3;(source:Araport11)
AT5G34940.2	protein_coding	glucuronidase 3	The protein is predicted  (WoLF PSORT program) to be membrane-associated.	glucuronidase 3;(source:Araport11)
AT5G36290.2	protein_coding	Uncharacterized protein family (UPF0016)		Uncharacterized protein family (UPF0016);(source:Araport11)
AT5G13290.2	protein_coding	Protein kinase superfamily protein	Encodes a protein with predicted Ser/Thr kinase activity and membrane localization that is involved in the CLV3 signaling pathway that represses WUS expression in the meristem. Loss of function of CRN can suppress the phenotype caused by overexpression of CLV3. SOL2 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol2 partially suppresses the short root phenotype caused  by CLE19 overexpression. Mutant flowers have extra carpels.	Protein kinase superfamily protein;(source:Araport11)
AT5G13225.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT5G24520.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes. Auxin and ethylene responsiveness of TTG1 transcription is lost in myb12 mutants.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G24520.3	protein_coding	Transducin/WD40 repeat-like superfamily protein	Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes. Auxin and ethylene responsiveness of TTG1 transcription is lost in myb12 mutants.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G10235.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: ACG);(source:Araport11, TAIR10)
AT5G28770.2	protein_coding	bZIP transcription factor family protein	BASIC LEUCINE ZIPPER protein which regulates the circadian oscillator gene PSEUDO RESPONSE REGULATOR7 (PRR7) to change the circadian phase in response to sugars. It upregulates PRR7 in response to low energy. bZIP63 and PRR7 are required for correct oscillator phase under light/dark cycles. bZIP protein BZO2H3 mRNA, partial cds	bZIP transcription factor family protein;(source:Araport11)
AT5G23405.2	protein_coding	HMG-box (high mobility group) DNA-binding family protein		HMG-box (high mobility group) DNA-binding family protein;(source:Araport11)
AT5G30495.2	protein_coding	Fcf2 pre-rRNA processing protein		Fcf2 pre-rRNA processing protein;(source:Araport11)
AT5G52530.2	protein_coding	dentin sialophosphoprotein-related		dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G09370.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G09345.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: CAA);(source:Araport11, TAIR10)
AT5G11020.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G11010.2	protein_coding	Pre-mRNA cleavage complex II protein family		Pre-mRNA cleavage complex II protein family;(source:Araport11)
AT5G22050.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G22030.2	protein_coding	ubiquitin-specific protease 8		ubiquitin-specific protease 8;(source:Araport11)
AT5G22000.2	protein_coding	RING-H2 group F2A	encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.	RING-H2 group F2A;(source:Araport11)
AT5G22000.3	protein_coding	RING-H2 group F2A	encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.	RING-H2 group F2A;(source:Araport11)
AT5G22220.2	protein_coding	E2F transcription factor 1	Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. Binds DPA and RBR1 proteins. Expressed throughout the cell cycle. Abundance increased by auxin through stabilization of the protein. Elevates CDK levels and activity, even under hormone-free conditions. Promotes cell division and shortens cell doubling time, inhibits cell growth. Transgenic plants overexpressing AtE2Fa contained an increased level of AtE2Fb transcripts that is paralleled by an increase in the amount of the AtE2Fb protein, suggesting that AtE2Fb expression might actually be up-regulated by the AtE2Fa transcription factor.	E2F transcription factor 1;(source:Araport11)
AT5G13500.2	protein_coding			Hyp O-arabinosyltransferase-like protein;(source:Araport11)
AT5G13650.2	protein_coding	elongation factor family protein	Encodes SVR3, a putative chloroplast TypA translation elongation GTPase.  Loss of SVR3 suppresses variegation mediated by var2.  SVR3 is essential for plants’ ability to develop functional chloroplasts under chilling stress (8C), but not at normal temperature (22C).	elongation factor family protein;(source:Araport11)
AT5G02230.2	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G02020.2	protein_coding		Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich).	E3 ubiquitin-protein ligase RLIM-like protein;(source:Araport11)
AT5G02040.2	protein_coding	prenylated RAB acceptor 1.A1		prenylated RAB acceptor 1.A1;(source:Araport11)
AT5G02025.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT5G26692.1	protein_coding	Putative membrane lipoprotein	Encodes a Plant thionin family protein	Putative membrane lipoprotein;(source:Araport11)
AT5G26594.1	protein_coding	response regulator 24	Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family . It appears to be expressed in floral buds, mature flowers, and pollen. But, unlike the related ARR22 protein, it does not appear to be expressed at the seed:funiculus junction.	response regulator 24;(source:Araport11)
AT5G26618.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.3e-33 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT5G26642.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1);(source:TAIR10)
AT5G26667.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	encodes a uridine 5'-monophosphate (UMP)/cytidine 5'-monophosphate (CMP) kinase. The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G26667.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	encodes a uridine 5'-monophosphate (UMP)/cytidine 5'-monophosphate (CMP) kinase. The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G26717.1	protein_coding	Putative membrane lipoprotein	Encodes a Plant thionin family protein	Putative membrane lipoprotein;(source:Araport11)
AT5G31963.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);athila retroelement ORF1 protein, contains Pfam PF03078: ATHILA ORF-1 family;(source:TAIR10)
AT5G31981.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G31838.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10285.1);(source:TAIR10)
AT5G31999.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-44 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G31821.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G31891.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G31927.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.3e-132 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G31873.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30816.1);(source:TAIR10)
AT5G31855.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G31909.1	pseudogene			pseudogene of DNA-directed RNA polymerase family protein;(source:Araport11)
AT5G31945.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.4e-299 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32017.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
AT5G14850.2	protein_coding	Alg9-like mannosyltransferase family	Encodes a putative mannosyltransferase homolog to human PIG-B and yeast GPI10, both of which are involved in the biosynthesis of glycosylphosphatidylinositol (GPI) anchors.  Disruption of the gene affects COBRA-LIKE10 localization, a GPI-anchored protein (GPI-AP) important for pollen tube growth and guidance.	Alg9-like mannosyltransferase family;(source:Araport11)
AT5G46780.2	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT5G53450.2	protein_coding	OBP3-responsive gene 1		OBP3-responsive protein 1;(source:Araport11)
AT5G53487.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: CCC);(source:Araport11, TAIR10)
CER23	unknown		a genetic locus involved in cuticular wax biosynthesis. Lines carrying a recessive mutation have weakly glaucous stem surface and deficient in alkane, secondary alcohol, and ketone. This locus is genetically mapped to chr 2 at 21.7 cM.	
CER24	unknown		a genetic locus involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and has glaucous stem surface. The locus is genetically mapped on chr 3 at 88.9 cM.	
CER25	unknown		a genetic locus involved in cuticular wax biosynthesis. Lines carrying a recessive mutation have reduced wax load, elevated transcription rate, and reduced cuticle membrane. Genetic map location is unknown.	
WAX1	unknown		a genetic locus involved in cuticular wax synthesis or utilization. Mutants have reduced wax load, glossy stem surface, and fused leaves and floral organs, and indeterminate growth. Mutant plants are also sterile.	
BCF1	unknown		a genetic locus involved in cuticular wax biosynthesis or utilization. Mutants have wild-type stem waxes but glaucous leaves. Also mutant lines accumulate wax crystals on leaves. Leaves are deficient in primary alcohol, are small and wrinkled, greater in number than in wild type. Stems are stunted and plants are sterile.	
KNB1	unknown		a genetic locus involved in cuticular wax biosynthesis or utilization. Mutants have wild-type stem waxes but glaucous leaves. Also mutant lines accumulate wax crystals on leaves. Leaves are large and wrinkled and stems are twisted. Mutants also have elevated leaf wax load.	
DED	unknown		a genetic locus involved in cuticular wax biosynthesis or utilization.  Mutants show reduced fertility, organ fusion defects in juvenile and adult rosette leaves, flowers and some ovules. Mutants also show a waxless (glossy) phenotype. Not allelic to cer5-1.	
APG5	unknown			
ART2	unknown			
ASB3	unknown			
ASB4	protein_coding			
CLL14	unknown			
CLL15	unknown			
DLL1	unknown		Gain of function mutant of dll1 spontaneously develops lesions mimicking bacterial speck disease and constitutively  expresses biochemical and molecular markers associated with pathogen infection. Despite the constitutive expression of defense-related responses, dll1 is unable to suppress the growth of virulent  pathogens.	
EAL1	unknown		Genetic locus that affects hypocotyl and inflorescence stem gravitropism but not root gravitropism.  Mutant plants do not contain amyloplasts in the hypocotyl endodermis.  EAL1 may be involved in differentiation or development of gravity-sensing amyloplasts in the hypocotyl endodermis.	
EDR5	unknown			
EDS10	unknown		genetic locus involved in the jasmonate (JA)- and ethylene (ET)-dependent induced systemic resistance.  Mutants are more susceptible to the virulent bacterial pathogen Pseudomonas syringae Pseudomonas syringae pv. maculicola (Psm) ES4326 and to the biotrophic fungus Erysiphe orontii.	
EDS12	unknown		mutant with enhanced disease susceptibility to the virulent bacterial pathogen Pseudomonas syringae pv. maculicola (Psm) ES4326.	
ET22	unknown			
FKL1	unknown			
FLP2	unknown			
FRY2	unknown			
HIF1	unknown			
HSUB2	unknown			
IABH1	unknown			
LFT1	unknown			
MIL1	unknown			
MPI1	unknown			
NDK2	unknown			
OLD1	unknown		a genetic locus involved in leaf senescence in response to ethylene. Lines carrying recessive alleles exhibit early leaf senescence both in air and upon ethylene exposure. The etiolated old1 seedlings exhibited a hypersensitive triple response. The gene has recently been cloned and encodes a plant-specific protein of unknown function.	
OLD2	unknown		a genetic locus involved in leaf senescence in response to ethylene. Lines carrying dominant mutations exhibit early senescence in response to ethylene treatment.	
ORE5	unknown			
PAI4	unknown		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of a PAI gene family.Exists as tandem array of inverted repeat at one locus with PAI1 in Wassilewskija.	
PGR98	unknown			
PIG4	unknown			
PRP1	unknown			
RPW10	unknown			
RTR1	unknown			
RTR2	unknown			
SDS1	unknown			
SFR1	unknown		Isolated as a mutant defective in freezing tolerance. Mutants have impaired cold responses, reduced levels of cold induced RNA transcripts.	
SIS2	unknown			
SPY2	unknown			
SSI4	unknown		encodes a TIR-NBS-LRR protein. The gain of function mutant plant shows enhanced disease resistance.	
TOR3	unknown			
UPS1	unknown		Isolated in a EMS screen for mutations defective in TRP biosynthetic pathway regulation in response to stress. Mutants have reduced levels of camalexin biosynthesis and induction of JA/SA biosynthesis.Unmapped locus appears to segregate as a single mendelian trait.	
UVI1	unknown		UV-B insensitive 1	
WET368	unknown			
WET393	unknown			
YC58	unknown			
ALI	unknown		belongs to the DIS(distorted) gene family. Affects actin organization and trichome cell expansion.	
RDO3	unknown		Isolated in a screen for mutants with reduced dormancy by assaying percentage of seed germination from 1-4 weeks of dry storage.	
HIP2	unknown			
LOBC	protein_coding			
CIM5	unknown		a genetic locus involved in systemic acquired resistance. Mutant lines exhibit constitutive expression of PR1 promoter-reporter transgene and has high levels of salicylic acid. Genetically maps to chr 2 between markers ve017 and nga168.	
CIM6	unknown		a genetic locus involved in systemic acquired resistance. Mutant lines exhibit constitutive expression of PR1 promoter-reporter transgene and has high levels of salicylic acid. Genetically maps to chr 1 between markers nag280 and m185.	
CIM10	unknown		a genetic locus involved in systemic acquired resistance. Mutant lines exhibit constitutive expression of PR1 promoter-reporter transgene and has high levels of salicylic acid. Genetically maps to chr 5 between markers DFR and LFY3.	
CIM11	unknown		a genetic locus involved in systemic acquired resistance. Mutant lines exhibit constitutive expression of PR1 promoter-reporter transgene and has high levels of salicylic acid. Genetically maps to chr 1 between markers mi291a and nga280.	
PMR3	unknown		Genetic locus involved in resistance to the powdery mildew pathogen Erysiphe chicoracearum. The recessive mutant pmr3 is also a conditional dwarf. Resistance is not correlated with cell death. Gene is mapped to chromosome 5 between nga 249 and nga151.	
ALR-104	unknown			
ALR-128	unknown		Identified in a screen for aluminum resistant mutants using an aluminum mediated root growth inhibition assay. One of four mutants that map to the same locus on chromosome1.	
CHS2	unknown		a genetic locus involved in response to low temperature	
CHS4	unknown		a genetic locus involved in response to low temperature	
CHS5	unknown		a genetic locus involved in response to low temperature	
CHS6	unknown		a genetic locus involved in response to low temperature	
ELK2	unknown		Identified by a genetic screen performed to find new mutants with an erecta (er) phenotype. The screen was based on the appearance of the er clustered flower phenotype and the silique morphology (shorter, wider and blunt tip). It maps to chromosome 1, at approximately 85 cM. It has also been shown to be involved in resistance to Plectosphaerella cucumerina.	
ELK3	unknown		Mutants have shorter silique length than plants carrying the erecta mutant reference allele. The gene product likely functions in either separate and/or additional developmental pathways, with ER controlling silique shape.	
ELK5	unknown		Mutants have shorter silique length than plants carrying the erecta mutant reference allele. The gene product likely functions in either separate and/or additional developmental pathways, with ER controlling silique shape. The mutation is mapped on chromosome 1 between nga280 and ATHATPase.	
GAR10	unknown		Suppresses Gibberellin insensitive phenotype of GAI.	
GAR11	unknown		Suppresses Gibberellin insensitive phenotype of GAI.	
GAR12	unknown		Suppresses Gibberellin insensitive phenotype of GAI.	
GAR13	unknown		Suppresses Gibberellin insensitive phenotype of GAI.	
GAR14	unknown		Suppresses Gibberellin insensitive phenotype of GAI.	
GAR15	unknown		Suppresses Gibberellin insensitive phenotype of GAI.	
GAR16	unknown		Suppresses Gibberellin insensitive phenotype of GAI.	
GAR17	unknown		Suppresses Gibberellin insensitive phenotype of GAI.	
CEL3	unknown			
CLF1	unknown			
DAB5	unknown			
ATDRG3	unknown			
ATDRG2	unknown			
FCL1	unknown			
FCL2	unknown			
HRG1	unknown			
LRD1	unknown			
LRF1	unknown			
LRF2	unknown			
LRF3	unknown			
PAX1	unknown			
PSE13	unknown			
REM10	unknown			
REM14	unknown			
REM40	unknown			
REM42	unknown			
REM9	unknown			
RFI3	unknown			
ROT120	unknown			
RRB129	unknown			
RRD1	unknown		Involved in the process of organogenesis.  Mutants display temperature-sensitive defects in root redifferentiation of hypocotyl explants and as well as temperature-sensitive ability to form calli in vitro.	
RRD2	unknown		Involved in the process of organogenesis.  Mutants display temperature-sensitive defects in root redifferentiation of hypocotyl explants and as well as temperature-sensitive ability to form calli in vitro.	
RRD4	unknown		Involved in the process of organogenesis.  Mutants display temperature-sensitive defects in root redifferentiation of hypocotyl explants and as well as temperature-sensitive ability to form calli in vitro.	
RTE2	unknown			
BXL4	protein_coding		encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	
BXL5	protein_coding		encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	
BXL6	protein_coding		encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	
BXL7	protein_coding		encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	
ABE1	unknown			
ABE2	unknown			
ACW2	unknown			
AIP4	unknown			
AL29	unknown			
AME6	unknown			
ART3	unknown			
ATR5	unknown			
ATR8	unknown			
AVP3	unknown			
BBF1	unknown			
BBF2	unknown			
BBF3	unknown			
BPY1	unknown			
CIF2	unknown		The compact inflorescence (cif) phenotype appears to be adult-vegetative phase specific and depends on mutations in both CIF1 and CIF2 genes. Linkage analysis places the allele CIF2N between BAC T19E23 and BAC F3C3 on the top arm of chr.1.	
CLL4	unknown			
COIN3	unknown			
COIN4	unknown			
CRR1	unknown			
CRR3	unknown			
CSL1	unknown			
CSL4	unknown			
DHY1	unknown			
EAF20	unknown			
EB3	unknown			
ECL1	unknown			
EED1	unknown			
EF57	unknown			
ER6	unknown			
ERT1	unknown			
FASS1	unknown			
FIE3	unknown			
FOR1	protein_coding			
GM308	unknown		mutant line	
GRL1	unknown			
GRL2	unknown			
GRL3	unknown			
GRL7	unknown			
GRL8	unknown			
GRL9	unknown			
HIG5	unknown			
HOS7	unknown			
KNAT411	unknown			
LBD6	unknown			
LLM1	unknown		Encodes dominant resistance gene involved in blocking the replication or cell-to-cell movement of the LMV-0 (Lettuce mosaic virus) isolate in the Columbia accession; linked to marker	
LLP1	unknown			
LLP18	unknown			
LLP2	unknown			
LRA1	unknown			
MRC8	unknown			
MYM9	unknown			
NAT15	unknown			
NAT20	unknown			
NTL7	unknown			
PCE5	unknown			
RAP12	unknown			
RAP23	unknown			
SAT52	unknown			
SECY1	unknown			
SECY2	unknown			
SET1	unknown			
SGT90	unknown			
SOZ2	unknown			
TFA1	unknown			
TFA2	unknown			
TGG6	unknown			
TSL1	unknown			
TTV1	unknown			
TTV2	unknown			
VW331	unknown			
WVC16	unknown			
ZOX1	unknown			
AtCPRF2-1	unknown			
AtCPRF2-2	unknown			
AtCPRF2-3	unknown			
AtCR4	unknown			
ATRSR1	unknown		Mutants are hypersensitive to proline and are impaired in sugar signalling.	
AT-TCP11	unknown			
TSD3	unknown		a genetic locus involved in post-embryonic shoot morphogenesis. Mutants in this locus develop tumorous tissue at the base of the leaf and growth is enhanced by high levels of exogenous cytokinin. This locus is genetically mapped to upper arm of chr 3, approximately 1 cM from nga172.	
ZOX2	unknown			
ZOX3	unknown			
LN	unknown		ln mutant plants leaves are narrow, pointed, lance-shaped, and pods are short. Partial fertility resulted in inability of pollen to self fertilize.	
CAT3	unknown		Constitutively expresses auxin responsive transgenes.	
FKD2	unknown		Genetic locus crucial to the formation of the closed leaf vascular pattern characteristic of dicot leaves.  Mutants display an open venation pattern that lacks distal meeting.  Maps near SCF on chromosome 5 and may be allelic to it.	
EEN	unknown		Identified as a second site enhancer of the ein6 mutation which renders plants insensitive to ethylene.	
MAM2	protein_coding		encodes methylthioalkylmalate synthase 2 (MAM2), one of the three MAM genes in glucosinolate biosynthetic loci (GS-Elong) containing a combination of MAM1, MAM2 or MAM-L. MAMs determine the side chain length of glucosinolate structures. This locus is highly variable among ecotypes and is correlated with insect resistance quantitative trait locus. Col-0 ecotype lacks MAM2. The gene would be located between At5g23000 and At5g23010 (MAM1) on the Col genome.	
VET1	unknown		Single genetic locus involved in Verticillium dahliae-tolerance.  The ecotype C-24 displays increased tolerance to this fungal pathogen, whereas Columbia responds to the pathogen by flowering early and then dying.	
OHP	unknown		Encodes a gene involved in glucosinolate biosynthesis by regulating the conversion of 3-methylsulphinylpropyl to 3-hydroxypropyl glucosinolate.  Mapping experiments positioned the gene within a 56 kb region on chromosome IV.  The region contains three genes encoding 2-oxoglutarate-dependent dioxygenases but the specific gene encoding OHP has not been identified.	
ATAFC1	protein_coding			
ATGSTF1	protein_coding		Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Its transcript was isolated from Landsberg erecta ecotype and is not found in the Columbia ecotype. Therefore no AGI locus name has been designated and its chromosomal location in Ler is unknown.	
AXS1	unknown			
AT2G27340.2	protein_coding	N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein		N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein;(source:Araport11)
AT2G27500.2	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT2G27402.1	protein_coding			plastid transcriptionally active protein;(source:Araport11)
AT2G01200.2	protein_coding	indole-3-acetic acid inducible 32	Belongs to auxin inducible gene family.	indole-3-acetic acid inducible 32;(source:Araport11)
AT2G01180.2	protein_coding	phosphatidic acid phosphatase 1	Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.	phosphatidic acid phosphatase 1;(source:Araport11)
AT2G01175.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G01350.2	protein_coding	quinolinate phoshoribosyltransferase	At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.	quinolinate phoshoribosyltransferase;(source:Araport11)
AT2G01260.2	protein_coding	Protein of unknown function (DUF789)		hypothetical protein (DUF789);(source:Araport11)
AT2G01320.4	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT2G01170.2	protein_coding	bidirectional amino acid transporter 1	Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys, GABA but not pro with both export and import activity.  Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.	bidirectional amino acid transporter 1;(source:Araport11)
AT2G46330.2	protein_coding	arabinogalactan protein 16	Encodes arabinogalactan protein (AGP16).	arabinogalactan protein 16;(source:Araport11)
AT2G46530.2	protein_coding	auxin response factor 11		auxin response factor 11;(source:Araport11)
AT2G46500.2	protein_coding	phosphoinositide 4-kinase gamma 4	Phosphoinositide  kinase which undergo autophosphorylation and phosphorylate serine/threonine  residues of protein substrates. Contains phosphoinositide 3/4-kinase and ubiquitin-like domains. Phosphorylates PUFD1 and RPN10 in vitro.	phosphoinositide 4-kinase gamma 4;(source:Araport11)
AT2G35840.2	protein_coding	Sucrose-6F-phosphate phosphohydrolase family protein		Sucrose-6F-phosphate phosphohydrolase family protein;(source:Araport11)
AT2G36010.3	protein_coding	E2F transcription factor 3	Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway.	E2F transcription factor 3;(source:Araport11)
AT2G36010.2	protein_coding	E2F transcription factor 3	Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway.	E2F transcription factor 3;(source:Araport11)
AT2G16980.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G16832.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.7e-22 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT2G26860.2	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT2G27315.1	protein_coding	Protein of unknown function (DUF1278)		egg cell-secreted-like protein (DUF1278);(source:Araport11)
AT2G27250.2	protein_coding	CLAVATA3	One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis.  Belongs to a large gene family called CLE for CLAVATA3/ESR-related.  Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone.  The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide.  The functional form of CLV3 (MCLV3) was first reported to be a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline (Ito et al., Science 2006, 313:842; Kondo et al., Science 2006, 313:845).  Ohyama et al. (2009) later reported that the active mature CLV3 is a 13-amino-acid arabinosylated glycopeptide (Nature Chemical Biology, 5:578).  CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein.  It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function. Results obtained from whole seedlings challenge the concept that the immune receptor FLS2 perceives the meristematic regulatory peptide CLV3p in mesophyll, seedlings, and SAM cells and that CLV3p contributes to SAM immunity against bacterial infection (PMID:22923673).	CLAVATA3;(source:Araport11)
AT2G27350.5	protein_coding	OTU-like cysteine protease family protein	Encodes an otubain-like histone deubiquitinase involved in chromatin modification and regulation of plant gene expression.	OTU-like cysteine protease family protein;(source:Araport11)
AT2G27350.4	protein_coding	OTU-like cysteine protease family protein	Encodes an otubain-like histone deubiquitinase involved in chromatin modification and regulation of plant gene expression.	OTU-like cysteine protease family protein;(source:Araport11)
AT2G27350.3	protein_coding	OTU-like cysteine protease family protein	Encodes an otubain-like histone deubiquitinase involved in chromatin modification and regulation of plant gene expression.	OTU-like cysteine protease family protein;(source:Araport11)
AT2G39415.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G10405.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 1.3e-19 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT2G46610.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G41260.2	protein_coding	glycine-rich protein / late embryogenesis abundant protein (M17)	Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.	glycine-rich protein / late embryogenesis abundant protein (M17);(source:Araport11)
AT2G41430.3	protein_coding	dehydration-induced protein (ERD15)	Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a  CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.	dehydration-induced protein (ERD15);(source:Araport11)
AT2G41430.4	protein_coding	dehydration-induced protein (ERD15)	Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a  CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.	dehydration-induced protein (ERD15);(source:Araport11)
AT2G38820.2	protein_coding	Protein of unknown function (DUF506) 		DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506);(source:Araport11)
AT2G13705.1	pseudogene			pseudogene of DNA topoisomerase 1 beta;(source:Araport11)
AT2G13820.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G36670.2	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT2G36695.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G37570.2	protein_coding	HSP20-like chaperones superfamily protein	encodes a protein that can complement the salt-sensitive phenotype of a calcineurin (CaN)-deficient yeast mutant. This gene occurs in a single-copy and is 75% identical to tobacco SLT1 gene.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT2G37560.2	protein_coding	origin recognition complex second largest subunit 2	Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits.	origin recognition complex second largest subunit 2;(source:Araport11)
AT2G34357.1	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT2G34260.2	protein_coding	transducin family protein / WD-40 repeat family protein	Encodes a WDxR motif-containing protein that is required for gametogenesis, seed and endosperm development.	transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G43160.3	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT2G43180.4	protein_coding	Phosphoenolpyruvate carboxylase family protein		Phosphoenolpyruvate carboxylase family protein;(source:Araport11)
AT2G43180.3	protein_coding	Phosphoenolpyruvate carboxylase family protein		Phosphoenolpyruvate carboxylase family protein;(source:Araport11)
AT2G43190.3	protein_coding	ribonuclease P family protein	Encodes a protein involved in rRNA but not tRNA maturation.	ribonuclease P family protein;(source:Araport11)
AT2G22570.2	protein_coding	nicotinamidase 1	encodes a nicotinamidase that converts nicotinamide into nicotinic acid. As such the encoded enzyme is involved in the pyridine nucleotide salvage pathway which may be connected to the de novo NAD biosynthesis through the ABA signaling pathway.	nicotinamidase 1;(source:Araport11)
AT2G22475.2	protein_coding	GRAM domain family protein	Encodes GL2-expression modulator (GEM).  Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells.  GEM interacts with CDT1, a DNA replication protein and TTG1 (TRANSPARENT TESTA GLABRA1), a WD40-repeat protein involved in GL2-dependent cell fate decision.  GEM seems to participate in the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC (CAPRICE) promoters.	GRAM domain family protein;(source:Araport11)
AT2G47020.2	protein_coding	Peptide chain release factor 1		Peptide chain release factor 1;(source:Araport11)
AT2G46880.2	protein_coding	purple acid phosphatase 14		purple acid phosphatase 14;(source:Araport11)
AT2G47010.2	protein_coding			calcium/calcium/calmodulin-dependent Serine/Threonine-kinase;(source:Araport11)
AT2G42500.2	protein_coding	protein phosphatase 2A-3	Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].  ACR4 phosphorylates the PROTEIN PHOSPHATASE 2A-3 (PP2A-3) catalytic subunit of the PP2A phosphatase holoenzyme and PP2A dephosphorylates ACR4.	protein phosphatase 2A-3;(source:Araport11)
AT2G11485.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G11502.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G11504.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G11507.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G15145.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to P0458A05.18, blastp match of 30%25 identity and 2.6e-10 P-value to GP|11875196|dbj|BAB19409.1||AP002870 P0458A05.18 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G27810.2	protein_coding	nucleobase-ascorbate transporter 12	Encodes a plasma-membrane localized nucleobase transporter capable of transporting adenine, guanine, uracil and hypoxanthine. Likely to be a proton-nucleobase symporter.	nucleobase-ascorbate transporter 12;(source:Araport11)
AT2G27710.3	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT2G13290.2	protein_coding	beta-1,4-N-acetylglucosaminyltransferase family protein		beta-1,4-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT2G31345.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G16365.2	protein_coding	F-box family protein	PCH1 binds and stabilizes the active (Pfr) form of phytochrome B and is involved in the formation of photobodies in the nucleus. PCH1 is expressed in evenings and is associated to the evening complex through binding to phyB, and represses hypocotyl elongation and growth. Using mass spec, the existence of the At2g16365.2 isoform has been verified, however here is no evidence that any of the other three variants are present. Atg2G16365.2 will be assigned PCH1; exon 4 and 5 in the other variants are actually another gene of the F-box/DUF295 family with gene name FDA10.	F-box family protein;(source:Araport11)
AT2G16385.1	protein_coding		CAF1 is a peptide hormone expressed in the root stele that specifically binds the endodermis-expressed leucine-rich repeat receptor kinase GASSHO1 (GSO1)/SCHENGEN3 and its homolog, GSO2. Together with CAF2 it is required for formation of the casparian band.	aspartate carbamoyltransferase;(source:Araport11)
AT2G16460.2	protein_coding	Protein of unknown function (DUF1640)		coiled-coil 90B-like protein (DUF1640);(source:Araport11)
AT2G10895.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G38130.2	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.	Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G38185.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G38185.4	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G38185.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G38290.2	protein_coding	ammonium transporter 2	encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.	ammonium transporter 2;(source:Araport11)
AT2G38170.3	protein_coding	cation exchanger 1	Encodes a high affinity vacuolar calcium antiporter.  The residue His 338 is critical to Ca2+ transport activity. Disruption of CAX1 reduces manganese and zinc of shoot tissue and results in a decrease in the activity of vacuolar V-type proton ATPase.	cation exchanger 1;(source:Araport11)
AT2G29390.3	protein_coding	sterol 4-alpha-methyl-oxidase 2-2	Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.	sterol 4-alpha-methyl-oxidase 2-2;(source:Araport11)
AT2G29525.2	protein_coding	Arabidopsis Inositol phosphorylceramide synthase 3	Inositol phosphorylceramide synthase	Inositol phosphorylceramide synthase 3;(source:Araport11)
AT2G29350.2	protein_coding	senescence-associated gene 13	senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase	senescence-associated gene 13;(source:Araport11)
AT2G29165.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.9e-35 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT2G47890.2	protein_coding	B-box type zinc finger protein with CCT domain		B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT2G47860.2	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT2G47640.3	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT2G47910.2	protein_coding	chlororespiratory reduction 6	Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.	chlororespiratory reduction 6;(source:Araport11)
AT2G25760.2	protein_coding	Protein kinase family protein	Casein kinase involved in phosphorylation and ubiquination of RYR/PYLs, resulting in negative regulation of ABA response.	Protein kinase family protein;(source:Araport11)
AT2G25840.2	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT2G25840.3	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT2G45630.2	protein_coding	D-isomer specific 2-hydroxyacid dehydrogenase family protein	Hydroxyphenylpyruvate reductase (HPPR) family member with low activity.	D-isomer specific 2-hydroxyacid dehydrogenase family protein;(source:Araport11)
AT2G13895.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G26695.1	protein_coding	Ran BP2/NZF zinc finger-like superfamily protein		Ran BP2/NZF zinc finger-like superfamily protein;(source:Araport11)
AT2G43680.2	protein_coding	IQ-domain 14	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 14;(source:Araport11)
AT2G43660.2	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT2G43850.2	protein_coding	Integrin-linked protein kinase family		Integrin-linked protein kinase family;(source:Araport11)
AT2G43840.2	protein_coding	UDP-glycosyltransferase 74 F1	UGT74F1 transfers UDP:glucose to salicylic acid (forming a glucoside), benzoic acid, quercetin, and athranilate in vitro. UGT74F1 shows a weak ability to catalyze the formation of the p-aminobenzoate-glucose ester in vitro. But, UGT75B1 appears to be the dominant pABA acylglucosyltransferase in vivo based on assays in leaves, flowers, and siliques. The true biological substrate(s) of UGT74F1 are not known, but mutant plants lacking UGT74F1 have a decreased level of salicylate glucoside.	UDP-glycosyltransferase 74 F1;(source:Araport11)
AT2G06296.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06303.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06335.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06235.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06245.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06285.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G03710.3	protein_coding	K-box region and MADS-box transcription factor family protein 	This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT2G03810.2	protein_coding	18S pre-ribosomal assembly protein gar2-related		18S pre-ribosomal assembly protein gar2-like protein;(source:Araport11)
AT2G46790.2	protein_coding	pseudo-response regulator 9	Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY.	pseudo-response regulator 9;(source:Araport11)
AT2G34900.2	protein_coding	Transcription factor GTE6	Encodes a member of the BET subgroup of bromodomain proteins, a novel class of putative transcription factors.  Its expression is induced during seed imbibition and downregulated during germination. Seeds of a loss-of-function mutant allele, imb1, show impaired cotyledon greening during germination in abscisic acid (ABA) and express higher levels of ABI5 protein than the wild type. Moreover, imb1 seeds are deficient in the phytochrome A (phyA)-mediated very-low-fluence response of germination.	Transcription factor GTE6;(source:Araport11)
AT2G34835.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.6e-32 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G05084.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT1G35950.1);(source:TAIR10)
AT2G05082.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT3G13260.1);(source:TAIR10)
AT2G05087.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT3G42410.1);(source:TAIR10)
AT2G16530.2	protein_coding	3-oxo-5-alpha-steroid 4-dehydrogenase family protein	Encodes  polyprenol reductase involved in N-gylcosylation. Mutants are defective in pollen development. Knockouts are embryo lethal	3-oxo-5-alpha-steroid 4-dehydrogenase family protein;(source:Araport11)
AT2G31865.2	protein_coding	poly(ADP-ribose) glycohydrolase 2		poly(ADP-ribose) glycohydrolase 2;(source:Araport11)
AT2G31862.1	protein_coding			B3 domain protein;(source:Araport11)
AT2G22990.5	protein_coding	sinapoylglucose 1	sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.	sinapoylglucose 1;(source:Araport11)
AT2G23080.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G23010.2	protein_coding	serine carboxypeptidase-like 9		serine carboxypeptidase-like 9;(source:Araport11)
AT2G23130.2	protein_coding	arabinogalactan protein 17	AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.	arabinogalactan protein 17;(source:Araport11)
AT2G32090.2	protein_coding	Lactoylglutathione lyase / glyoxalase I family protein		Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT2G29930.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT2G29930.3	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT2G01060.2	protein_coding	myb-like HTH transcriptional regulator family protein		myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT2G01100.3	protein_coding			FAM133-like protein;(source:Araport11)
AT2G01029.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.7e-215 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT2G01930.2	protein_coding	basic pentacysteine1	BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.	basic pentacysteine1;(source:Araport11)
AT2G12025.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.9e-47 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G20590.2	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT2G20650.2	protein_coding	RING/U-box superfamily protein	Encodes a putative RING E3 ubiquitin ligase based on its 84.5% amino acid identity with FLY1, which possesses this activity in vitro.  It is predicted to be localized to the endomembrane system based on protein topology.The mucilage of fly2 mutant seeds hydrated in water resembles  wild type seed mucilage.	RING/U-box superfamily protein;(source:Araport11)
AT2G20610.2	protein_coding	Tyrosine transaminase family protein	Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.	Tyrosine transaminase family protein;(source:Araport11)
AT2G20630.2	protein_coding	PP2C induced by AVRRPM1		PP2C induced by AVRRPM1;(source:Araport11)
AT2G12407.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.7e-15 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G12325.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.9e-16 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G12385.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G12345.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07493.1);(source:TAIR10)
AT2G28056.1	miRNA_primary_transcript	MIR172/MIR172A; miRNA	Encodes a microRNA that targets several genes containing AP2 domains including AP2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AGAAUCUUGAUGAUGCUGCAU. Pri-mRNA coordinates for MIR172a (converted to TAIR10 based on PMID19304749): Chr2: 11943611-11941515 (reverse), length:  2097 bp; exon coordinates: exon 1: 11943611 to 11942837, exon 2: 11942688 to 11942600, exon 3: 11941905 to 11941515; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR172a precursor;(source:Araport11)
AT2G28053.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.6e-06 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G32650.2	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT2G32770.3	protein_coding	purple acid phosphatase 13		purple acid phosphatase 13;(source:Araport11)
AT2G32640.2	protein_coding		Encodes a lycopene beta cyclase that catalyzes the addition of beta-ionone end groups to the end of lycopene molecules.	Lycopene beta/epsilon cyclase protein;(source:Araport11)
AT2G32840.2	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT2G24600.3	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT2G14774.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05564.1);(source:TAIR10)
AT2G14772.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G14843.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.5e-35 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT2G14796.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.7e-05 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G14770.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1);(source:TAIR10)
AT2G14793.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.0e-24 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G14846.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G14835.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G14777.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);expressed protein, No suitable start codon could be identified.;(source:TAIR10)
AT2G20950.2	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G20950.3	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G20950.4	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G15390.2	protein_coding	fucosyltransferase 4	Encodes an alpha-(1,2)-fucosyltransferase.	fucosyltransferase 4;(source:Araport11)
AT2G24790.2	protein_coding	CONSTANS-like 3	Positive  regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently  of COP1 and also function as a daylength-sensitive regulator of shoot branching. The mRNA is cell-to-cell mobile.	CONSTANS-like 3;(source:Araport11)
AT2G24696.1	protein_coding	transcriptional factor B3 family protein		transcriptional factor B3 family protein;(source:Araport11)
AT2G24693.1	protein_coding	Protein of unknown function (PD694200)	Encodes a defensin-like (DEFL) family protein.	Protein of unknown function (PD694200);(source:Araport11)
AT2G25040.1	pseudogene			pseudogene of casein lytic proteinase B4;(source:Araport11)
AT2G25025.1	pseudogene			pseudogene of AGAMOUS-like 28;(source:Araport11)
AT2G25015.1	pseudogene			pseudogene of DNA repair protein-like protein;(source:Araport11)
AT2G24120.2	protein_coding	DNA/RNA polymerases superfamily protein		DNA/RNA polymerases superfamily protein;(source:Araport11)
AT2G24270.2	protein_coding	aldehyde dehydrogenase 11A3	Encodes a protein with non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase activity. The activity of the enzyme was determined from leaf extracts; the enzyme has not been purified to confirm activity.	aldehyde dehydrogenase 11A3;(source:Araport11)
AT2G24165.1	pseudogene			pseudogene of receptor like protein 30;(source:Araport11)
AT2G40110.2	protein_coding	Yippee family putative zinc-binding protein		Yippee family putative zinc-binding protein;(source:Araport11)
AT2G15280.2	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT2G04790.2	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G36250.2	protein_coding	Tubulin/FtsZ family protein	Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis.  It is involved in chloroplast division.	Tubulin/FtsZ family protein;(source:Araport11)
AT2G03935.1	pseudogene		pseudogene similar to putative carboxyl-terminal proteinase	pseudogene of carboxyl-terminal peptidase (DUF239);(source:Araport11)
AT2G03915.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G03930.2	protein_coding	Protein of Unknown Function (DUF239)		hypothetical protein (DUF239);(source:Araport11)
AT2G37480.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G37340.3	protein_coding	arginine/serine-rich zinc knuckle-containing protein 33	encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	arginine/serine-rich zinc knuckle-containing protein 33;(source:Araport11)
AT2G37340.2	protein_coding	arginine/serine-rich zinc knuckle-containing protein 33	encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	arginine/serine-rich zinc knuckle-containing protein 33;(source:Araport11)
AT2G37440.2	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT2G37410.2	protein_coding	translocase inner membrane subunit 17-2	Mitochondrial inner membrane translocase. Together with AtTIM17-1, TIM17-2 has a long C-terminal extension not present in other TIMs. The extension is located in the outer membrane and so TIM17-2 links the inner and outer mitochondrial membranes. The C-terminal region is essential for protein import into mitochondria via the general import pathway but is not necessary for import via the carrier pathway.	translocase inner membrane subunit 17-2;(source:Araport11)
AT2G21370.2	protein_coding	xylulose kinase-1	Although this gene has a sequence similar to xylulose kinases, several lines of experimental evidence suggest that it does not act on xylulose or deoxy-xylulose.	xylulose kinase-1;(source:Araport11)
AT2G21470.2	protein_coding	SUMO-activating enzyme 2	Encodes one of the two subunits of the SUMO activation enzyme required during sumolation.  Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.	SUMO-activating enzyme 2;(source:Araport11)
AT2G21340.2	protein_coding	MATE efflux family protein	Encodes a homolog of the multidrug and toxin extrusion transporter ENHANCED DISEASE SUSCEPTIBILITY5 that is constitutively expressed in green tissues independent of pathogen infection and is expressed in the chloroplast envelope.  Unlike EDS5, it does not contribute to pathogen-induced SA accumulation.	MATE efflux family protein;(source:Araport11)
AT2G21250.2	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G04043.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 3.7e-41 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G04042.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.0e-26 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G19610.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G45830.2	protein_coding	downstream target of AGL15 2		downstream target of AGL15 2;(source:Araport11)
AT2G44500.2	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT2G33470.2	protein_coding	glycolipid transfer protein 1		glycolipid transfer protein 1;(source:Araport11)
AT2G33620.3	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT2G33500.2	protein_coding	B-box type zinc finger protein with CCT domain		B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT2G05115.1	pseudogene			pseudogene of F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT2G05185.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G20740.2	protein_coding	Tetraspanin family protein		Tetraspanin family protein;(source:Araport11)
AT2G20740.3	protein_coding	Tetraspanin family protein		Tetraspanin family protein;(source:Araport11)
AT2G20710.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G20900.3	protein_coding	diacylglycerol kinase 5		diacylglycerol kinase 5;(source:Araport11)
AT2G20830.2	protein_coding	transferases;folic acid binding		folic acid binding / transferase;(source:Araport11)
AT2G20790.2	protein_coding	clathrin adaptor complexes medium subunit family protein		clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT2G20790.3	protein_coding	clathrin adaptor complexes medium subunit family protein		clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT2G06125.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein;(source:TAIR10)
AT2G06045.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.2e-12 P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa);(source:TAIR10)
AT2G06050.2	protein_coding	oxophytodienoate-reductase 3	Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. Shows activity towards 2,4,6-trinitrotoluene.  CFA-Ile, CFA-Leu, CFA-Val, CFA-Met and CFA-Ala can restore the fertility of opr3 plants by inducing filament elongation and anther dehiscence.	oxophytodienoate-reductase 3;(source:Araport11)
AT2G02205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G44110.2	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO15 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root tips and flower (papillae, anthers and pollen grains), as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT2G44140.2	protein_coding	Peptidase family C54 protein		Peptidase family C54 protein;(source:Araport11)
AT2G44065.2	protein_coding	Ribosomal protein L2 family		Ribosomal protein L2 family;(source:Araport11)
AT2G19803.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G19806.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mariner-like transposase family, has a 1.2e-19 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max);(source:TAIR10)
AT2G19825.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G19755.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.2e-08 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT2G17055.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT2G10070.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40125.1);(source:TAIR10)
AT2G09956.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G09953.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G42890.2	protein_coding	MEI2-like 2	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.	MEI2-like 2;(source:Araport11)
AT2G21940.2	protein_coding	shikimate kinase 1	Encodes a shikimate kinase. Its transcripts appear to be expressed most highly in mature embryos and senescing leaves, and its transcript levels rise during heat stress and recovery. It is believed to be localized to the chloroplast.	shikimate kinase 1;(source:Araport11)
AT2G30940.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G30985.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G30942.1	protein_coding	Protein of unknown function (DUF3317)	Encodes a 56-amino acid polypeptide with low but significant similarity to human small subunit of serine palmitoyltransferase that localizes to the ER and physically interacts with and greatly stimulates the activity of LCB1/LCB2 heterodimer ser palmitoyltransferase complex.	transmembrane protein, putative (DUF3317);(source:Araport11)
AT2G30880.2	protein_coding	Pleckstrin homology (PH) domain-containing protein		Pleckstrin homology (PH) domain-containing protein;(source:Araport11)
AT2G30910.2	protein_coding	actin-related protein C1A		actin-related protein C1A;(source:Araport11)
AT2G16210.2	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT2G10285.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G31838.1);(source:TAIR10)
AT2G21230.2	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	bZIP30 is a transcriptional activator that is involved in regulation of growth and development of reproductive organs. It interacts with a number of developmental regulators including WUS, HEC1, KNAT1/BP, KNAT2, JAB, BEL1, and NGA1.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G28940.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G28760.2	protein_coding	UDP-XYL synthase 6		UDP-XYL synthase 6;(source:Araport11)
AT2G07635.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.6e-89 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10)
AT2G13975.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43920.1);(source:TAIR10)
AT2G15530.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G15490.2	protein_coding	UDP-glycosyltransferase 73B4		UDP-glycosyltransferase 73B4;(source:Araport11)
AT2G42395.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G17540.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G17500.3	protein_coding	Auxin efflux carrier family protein		Auxin efflux carrier family protein;(source:Araport11)
AT2G41745.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase, blastp match of 28%25 identity and 4.7e-24 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G41860.2	protein_coding	calcium-dependent protein kinase 14	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 14;(source:Araport11)
AT2G30630.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G30695.2	protein_coding			bacterial trigger factor;(source:Araport11)
AT2G06510.2	protein_coding	replication protein A 1A	Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I.	replication protein A 1A;(source:Araport11)
AT2G07789.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G07788.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.5e-221 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G07880.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G11090.1);(source:TAIR10)
AT2G07791.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G07790.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 6.6e-74 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G07365.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.1e-23 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT2G07395.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G11235.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.6e-94 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT2G11168.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G11166.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G11115.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G14535.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-19 P-value blast match to GB:CAA37925 orf 3 (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G14605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.9e-29 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G14475.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT2G14405.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT2G14560.2	protein_coding	Protein of unknown function (DUF567)	Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica.  LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5. The mRNA is cell-to-cell mobile.	LURP-one-like protein (DUF567);(source:Araport11)
AT2G14455.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT1G35930.1);(source:TAIR10)
AT2G06715.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G09862.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.8e-13 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT2G34090.2	protein_coding	maternal effect embryo arrest 18		maternal effect embryo arrest 18;(source:Araport11)
AT2G44980.2	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein		SNF2 domain-containing protein / helicase domain-containing protein;(source:Araport11)
AT2G45150.3	protein_coding	cytidinediphosphate diacylglycerol synthase 4		cytidinediphosphate diacylglycerol synthase 4;(source:Araport11)
AT2G45150.2	protein_coding	cytidinediphosphate diacylglycerol synthase 4		cytidinediphosphate diacylglycerol synthase 4;(source:Araport11)
AT2G45010.2	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT2G10205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.4e-36 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G10265.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 0.00012 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT2G10256.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 9.0e-27 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G10223.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10226.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase., blastp match of 28%25 identity and 1.0e-07 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT2G10165.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.7e-22 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10232.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10234.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10237.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10253.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G15045.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT4G08860.1);(source:TAIR10)
AT2G15050.2	protein_coding	lipid transfer protein	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	lipid transfer protein;(source:Araport11)
AT2G22122.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G02390.3	protein_coding	glutathione S-transferase zeta 1	Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the  oxidant tert-butylhydroperoxide.  It functions in vitro as a maleylacetoacetate isomerase and is likely to be involved in tyrosine catabolism.	glutathione S-transferase zeta 1;(source:Araport11)
AT2G10836.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to cytochrome P-450 aromatase-related [Arabidopsis thaliana] (TAIR:AT2G10470.1);(source:TAIR10)
AT2G10833.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10802.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.5e-28 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G13118.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.3e-08 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT2G13116.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G13128.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G13126.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G13142.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G13143.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G17670.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G17787.1	protein_coding			cylicin;(source:Araport11)
AT2G28550.2	protein_coding	related to AP2.7		related to AP2.7;(source:Araport11)
AT2G07783.1	pseudogene			pseudogene of cytochrome C biogenesis 382;(source:Araport11)
AT2G07784.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to reverse transcriptase, blastp match of 68%25 identity and 1.0e-16 P-value to GP|18643970|emb|CAD22561.1||AJ417799 reverse transcriptase {Brassica rapa subsp. rapa};(source:TAIR10)
AT2G02860.2	protein_coding	sucrose transporter 2	encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.	sucrose transporter 2;(source:Araport11)
AT2G02960.3	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G02960.5	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G02960.4	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G03020.2	protein_coding	Heat shock protein HSP20/alpha crystallin family		Heat shock protein HSP20/alpha crystallin family;(source:Araport11)
AT2G03890.2	protein_coding	phosphoinositide 4-kinase gamma 7	Phosphoinositide  kinase which undergo autophosphorylation and phosphorylate serine/threonine  residues of protein substrates. Contains phosphoinositide 3/4-kinase and ubiquitin-like domains. The mRNA is cell-to-cell mobile.	phosphoinositide 4-kinase gamma 7;(source:Araport11)
AT2G07785.1	protein_coding	NADH dehydrogenase family protein		NADH dehydrogenase family protein;(source:Araport11)
AT2G07786.1	pseudogene			pseudogene of NADH dehydrogenase 1A;(source:Araport11)
AT2G12855.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.4e-13 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT2G12845.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G12815.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein;(source:TAIR10)
AT2G12832.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G26030.2	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT2G26135.1	protein_coding	RING/U-box protein with C6HC-type zinc finger		RING/U-box protein with C6HC-type zinc finger;(source:Araport11)
AT2G33705.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G33793.1	protein_coding		Encodes a protein component of the pre-synaptic chromosome axis. Mutants show quantitative defects in meiotic recombination. Interacts with ASY1/ASY3.	DNA ligase-like protein;(source:Araport11)
AT2G33796.1	protein_coding	FBD-like domain family protein		FBD-like domain family protein;(source:Araport11)
AT2G33750.2	protein_coding	purine permease 2	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 2;(source:Araport11)
AT2G27920.2	protein_coding	serine carboxypeptidase-like 51		serine carboxypeptidase-like 51;(source:Araport11)
AT2G27935.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.2e-17 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT2G36885.2	protein_coding			translation initiation factor;(source:Araport11)
AT2G36985.1	protein_coding	DVL family protein	Encodes ROTUNDIFOLIA4, a member of the seed plant-specific family of small peptides, RTFL (ROT FOUR LIKE), characterised by the presence of a 29-amino acid domain: RTF. Expressed in shoot apices, young leaves and flowers. Involved in controlling polarity-dependent cell proliferation.	DVL family protein;(source:Araport11)
AT2G14260.2	protein_coding	proline iminopeptidase	encodes proline iminopeptidase	proline iminopeptidase;(source:Araport11)
AT2G14335.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G14255.1	protein_coding	Ankyrin repeat family protein with DHHC zinc finger domain		Ankyrin repeat family protein with DHHC zinc finger domain-containing protein;(source:Araport11)
AT2G14247.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT2G43430.2	protein_coding	glyoxalase 2-1	Encodes a predicted mitochondrial glyoxalase GLX2-1.  Studies using recombinant protein show that GLX2-1 contains a dinuclear metal binding site, but does not have glyoxalase 2 activity. Required for abiotic stress but not for normal plant growth.	glyoxalase 2-1;(source:Araport11)
AT2G04550.3	protein_coding	indole-3-butyric acid response 5	Encodes a protein phosphatase that interacts with MPK12, but not with other MAP kinases. It can dephosphorylate a dually phosphorylated MPK12 in vitro and can inactivate MPK12 in vivo. ibr5 mutants have reduced sensitivity to auxin and abscisic acid.  IBR5 promotes auxin responses, including auxin-inducible transcription, differently than the TIR1 auxin receptor and without destabilizing Aux/IAA repressor proteins. It plays a role in male gametophyte development, auxin and TCP growth regulatory pathways. Regulates leaf serrations development via modulation of the expression of PIN1.	indole-3-butyric acid response 5;(source:Araport11)
AT2G40810.2	protein_coding	homolog of yeast autophagy 18C		yeast autophagy-like protein;(source:Araport11)
AT2G40910.2	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G40830.3	protein_coding	RING-H2 finger C1A	Encodes an E3 ubiquitin ligase for the GA-receptor GID1 that functions as a negative regulator of GA signaling in seedlings and seeds by inducing ubiquitin-dependent proteolysis of GID1s. Tyr321 phosphorylation of GARU by TAGK2 inactivates GARU.	RING-H2 finger C1A;(source:Araport11)
AT2G40830.2	protein_coding	RING-H2 finger C1A	Encodes an E3 ubiquitin ligase for the GA-receptor GID1 that functions as a negative regulator of GA signaling in seedlings and seeds by inducing ubiquitin-dependent proteolysis of GID1s. Tyr321 phosphorylation of GARU by TAGK2 inactivates GARU.	RING-H2 finger C1A;(source:Araport11)
AT2G23240.2	protein_coding	Plant EC metallothionein-like protein, family 15	AtMT4b is a member of Type 4 metallothionein (MT) genes. It is involved in the early develoment of the embryo and in the accumulation of metal ions especially Zn in the seeds.	Plant EC metallothionein-like protein, family 15;(source:Araport11)
AT2G23320.2	protein_coding	WRKY DNA-binding protein 15	Encodes WRKY DNA-binding protein 15 (WRKY15).	WRKY DNA-binding protein 15;(source:Araport11)
AT2G35612.1	protein_coding			copper amine oxidase family protein;(source:Araport11)
AT2G35660.2	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein	Encodes a member of a novel gene family with  homology to known proteins involved in hydroxylation and oxidation of an aromatic ring.	FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT2G35710.2	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein		Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT2G35710.3	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein		Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT2G02730.2	protein_coding	Protein of unknown function (DUF1664)		GRIP/coiled-coil protein, putative (DUF1664);(source:Araport11)
AT2G02800.2	protein_coding	protein kinase 2B	Encodes protein kinase APK2b.	protein kinase 2B;(source:Araport11)
AT2G02710.3	protein_coding	PAS/LOV protein B	Encodes a putative blue light receptor protein.	PAS/LOV protein B;(source:Araport11)
AT2G05564.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14774.1);(source:TAIR10)
AT2G05567.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G05635.1	protein_coding	DNA repair DEAD helicase RAD3/XP-D subfamily protein		DNA repair DEAD helicase RAD3/XP-D subfamily protein;(source:Araport11)
AT2G05475.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G05562.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1);(source:TAIR10)
AT2G22905.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT2G27035.1	protein_coding	early nodulin-like protein 20	Has been classified as a stellacyanin.  Has also been classified as an early nodulin-like protein (ENODL), because it does not have a His residue involved in Cu binding.  ENODLs are proteins having one plastocyanin-like (PCNL) domain lacking the amino acid residues necessary for Cu binding.	early nodulin-like protein 20;(source:Araport11)
AT2G27080.2	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT2G32860.2	protein_coding	beta glucosidase 33		beta glucosidase 33;(source:Araport11)
AT2G25305.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT2G17220.2	protein_coding	Protein kinase superfamily protein	Encodes a putative serine/threonine-specific protein kinase kin3. Protein is N-myristoylated.	Protein kinase superfamily protein;(source:Araport11)
AT2G01830.3	protein_coding	CHASE domain containing histidine kinase protein	Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane	CHASE domain containing histidine kinase protein;(source:Araport11)
AT2G01890.2	protein_coding	purple acid phosphatase 8	Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group.	purple acid phosphatase 8;(source:Araport11)
AT2G04240.2	protein_coding	RING/U-box superfamily protein	Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus.  Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism.	RING/U-box superfamily protein;(source:Araport11)
AT2G42280.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G42230.2	protein_coding	C-CAP/cofactor C-like domain-containing protein		C-CAP/cofactor C-like domain-containing protein;(source:Araport11)
AT2G42120.2	protein_coding	DNA polymerase delta small subunit		DNA polymerase delta small subunit;(source:Araport11)
AT2G42130.2	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT2G42130.3	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT2G42130.4	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT2G42130.5	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT2G07185.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G07212.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G07155.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 7.9e-17 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT2G32480.2	protein_coding	ARABIDOPSIS SERIN PROTEASE	Metalloprotease essential for plastid development. Located in the inner membrane of chloroplasts.	chloroplastic membrane metallo proteases;(source:Araport11)
AT2G22240.2	protein_coding	myo-inositol-1-phosphate synthase 2	** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocalization experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	myo-inositol-1-phosphate synthase 2;(source:Araport11)
AT2G14890.2	protein_coding	arabinogalactan protein 9	putative proline-rich protein (At2g14890) mRNA, complete The mRNA is cell-to-cell mobile.	arabinogalactan protein 9;(source:Araport11)
AT2G14910.2	protein_coding			MAR-binding filament-like protein;(source:Araport11)
AT2G29650.3	protein_coding	phosphate transporter 4;1	Encodes an inorganic phosphate transporter that  is localized to the thylakoid membrane.	phosphate transporter 4;(source:Araport11)
AT2G30200.2	protein_coding	catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding	Malonyl-ACP expressed in developing seeds. Loss of function mutants are embryo lethal and over expression in seeds leads to increased seed oil content.	EMBRYO DEFECTIVE 3147;(source:Araport11)
AT2G18030.2	protein_coding	Peptide methionine sulfoxide reductase family protein		Peptide methionine sulfoxide reductase family protein;(source:Araport11)
AT2G24300.2	protein_coding	Calmodulin-binding protein		Calmodulin-binding protein;(source:Araport11)
AT2G39855.2	protein_coding			plant/protein;(source:Araport11)
AT2G40085.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G40020.2	protein_coding	Nucleolar histone methyltransferase-related protein		Nucleolar histone methyltransferase-related protein;(source:Araport11)
AT2G23990.2	protein_coding	early nodulin-like protein 11		early nodulin-like protein 11;(source:Araport11)
AT2G23820.2	protein_coding	Metal-dependent phosphohydrolase		Metal-dependent phosphohydrolase;(source:Araport11)
AT2G24030.2	protein_coding	zinc ion binding;nucleic acid binding		zinc ion binding / nucleic acid binding protein;(source:Araport11)
AT2G20080.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G20142.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT2G37060.2	protein_coding	nuclear factor Y, subunit B8		nuclear factor Y, subunit B8;(source:Araport11)
AT2G37150.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G47470.2	protein_coding	thioredoxin family protein	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response. The mRNA is cell-to-cell mobile.	thioredoxin family protein;(source:Araport11)
AT2G47485.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G34530.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G34560.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G34655.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G32250.2	protein_coding	FAR1-related sequence 2		FAR1-related sequence 2;(source:Araport11)
AT2G32275.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT2G41600.2	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT2G41520.2	protein_coding	Heat shock protein DnaJ with tetratricopeptide repeat	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Heat shock protein DnaJ with tetratricopeptide repeat-containing protein;(source:Araport11)
AT2G46280.3	protein_coding	TGF-beta receptor interacting protein 1	Encodes a homolog of mammalian TGF-beta receptor interacting protein.  Co-immunoprecipitates with BRI1 and can be phosphorylated in vitro by BRI1 at specific sites (Thr-14, Thr-89, and either Thr-197 or Ser-198).  May therefore be a cytoplasmic BRI1 substrate and involved in brassinosteroid regulated plant growth and development.The encoded protein has two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	TGF-beta receptor interacting protein 1;(source:Araport11)
AT2G46320.3	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT2G46200.2	protein_coding			U11/U12 small nuclear ribonucleoprotein;(source:Araport11)
AT2G46020.2	protein_coding	transcription regulatory protein SNF2, putative	Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.	transcription regulatory protein SNF2;(source:Araport11)
AT2G40410.2	protein_coding	Staphylococcal nuclease homologue	Encodes a Ca(2+)-dependent nuclease that can degrade both DNA and RNA.	Ca(2+)-dependent nuclease family protein;(source:Araport11)
AT2G40270.2	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT2G40290.2	protein_coding	Eukaryotic translation initiation factor 2 subunit 1	Encodes an eIF2alpha homolog that can be phosphorylated by GCN2 in vitro.	Eukaryotic translation initiation factor 2 subunit 1;(source:Araport11)
AT2G41020.2	protein_coding	WW domain-containing protein		WW domain-containing protein;(source:Araport11)
AT2G41070.3	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G05715.1	pseudogene			pseudogene of GLU-ADT subunit B;(source:Araport11)
AT2G35210.2	protein_coding	root and pollen arfgap	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	root and pollen arfgap;(source:Araport11)
AT2G35230.2	protein_coding	VQ motif-containing protein	Contains a plant-specific VQ motif. Involved in endosperm growth and seed size determination. IKU1 is expressed in the early endosperm and its progenitor, the central cell.IKU1 interacts with MINI3 in the yeast two-hybrid system.	VQ motif-containing protein;(source:Araport11)
AT2G06967.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.2e-202 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G06973.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.1e-07 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT2G06922.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-20 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT2G06912.1	pseudogene			pseudogene of nucleic acid binding / zinc ion binding protein;(source:Araport11)
AT2G06914.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32775.1);(source:TAIR10)
AT2G06917.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G06985.1	pseudogene			pseudogene of Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G03470.2	protein_coding	ELM2 domain-containing protein		ELM2 domain-containing protein;(source:Araport11)
AT2G03480.2	protein_coding	QUASIMODO2 LIKE 2	Encodes QUASIMODO2 LIKE2 (QUL2), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.	QUASIMODO2 LIKE 2;(source:Araport11)
AT2G07787.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G39725.2	protein_coding	LYR family of Fe/S cluster biogenesis protein		LYR family of Fe/S cluster biogenesis protein;(source:Araport11)
AT2G39800.2	protein_coding	delta1-pyrroline-5-carboxylate synthase 1	This splice variant is not translated into a protein. Transgenic plants with a c-terminal fusion of YFP to either the full length P5CS1 cDNA or the exon 3-skip cDNA were constructed. The exon 3-skip cDNA could not drive expression of fusion protein while the full length cDNA could do so. Also, the full length cDNA could increase proline when expressed in p5cs1 mutant background while expression of the exon 3-skip cDNA did not. Thus several lines of evidence show that At2g39800.2 does not encode any protein.	delta1-pyrroline-5-carboxylate synthase 1;(source:Araport11)
AT2G07773.1	protein_coding			cytochrome B/B6 protein;(source:Araport11)
AT2G07771.2	protein_coding	Cytochrome C assembly protein		Cytochrome C assembly protein;(source:Araport11)
AT2G07777.1	protein_coding	ATP synthase 9 mitochondrial		ATP synthase 9 mitochondrial;(source:Araport11)
AT2G07779.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07776.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G10617.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.0e-32 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G10614.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT2G10608.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G10611.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.3e-12 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT2G38695.1	protein_coding			Gag-Pol polyprotein/retrotransposon;(source:Araport11)
AT2G14635.1	protein_coding			ARABIDILLO protein;(source:Araport11)
AT2G30480.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G30505.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT2G41905.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G41945.1	protein_coding		Encodes a novel protein found only in plants. RED1 has two isoforms RED1.1 and RED1.2. It is localized to the nucleus. Loss of function mutants are embryo lethal but can be rescued before desiccation by embryo culture.	transmembrane protein;(source:Araport11)
AT2G06000.2	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G05830.2	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein	Encodes a 5-methylthioribose-1-phosphate isomerase.	NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT2G06005.2	protein_coding	FRIGIDA interacting protein 1	Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060.  FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time.	FRIGIDA interacting protein 1;(source:Araport11)
AT2G05935.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.9e-28 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT2G05985.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein;(source:TAIR10)
AT2G38960.2	protein_coding	endoplasmic reticulum oxidoreductins 2	Encodes an oxidoreductin required for oxidative protein folding in the ER and exists in two distinct oxidized isoforms (Ox1 and Ox2), which are determined by the formation or breakage of the putative regulatory disulfide. AtERO2 is mainly present in the Ox2 redox state.	endoplasmic reticulum oxidoreductins 2;(source:Araport11)
AT2G39000.3	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Encodes a chloroplast localized n-acetyltransfefase involved in  N-terminal protein amino acid acetylation.	Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G40130.2	protein_coding	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein	Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance.	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G47350.2	protein_coding	HIT zinc finger ;PAPA-1-like conserved region		HIT zinc finger and PAPA-1-like domain-containing protein;(source:Araport11)
AT2G01660.2	protein_coding	plasmodesmata-located protein 6	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	plasmodesmata-located protein 6;(source:Araport11)
AT2G01690.2	protein_coding	ARM repeat superfamily protein	Homologous to mammalian VAC14s, which is involved in the production of phosphatidylinositol 3,5-bisphosphate. Mutants are male gametophyte lethal.	ARM repeat superfamily protein;(source:Araport11)
AT2G28625.1	protein_coding		Encodes a cytoplasmic protein that genetically interacts with AtRZF1, a RING-type subunit of the E3 ubiquitin ligase family, to mediate proline accumulation in response to abiotic stress.	hypothetical protein;(source:Araport11)
AT2G38010.2	protein_coding	Neutral/alkaline non-lysosomal ceramidase		Neutral/alkaline non-lysosomal ceramidase;(source:Araport11)
AT2G37760.3	protein_coding	NAD(P)-linked oxidoreductase superfamily protein	Encodes an NADPH-dependent aldo-keto reductase that can act on a wide variety of substrates in vitro including aliphatic and aromatic aldehydes and steroids. Transcript levels for this gene are up-regulated in response to cold, salt, and drought stress.	NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G37760.2	protein_coding	NAD(P)-linked oxidoreductase superfamily protein	Encodes an NADPH-dependent aldo-keto reductase that can act on a wide variety of substrates in vitro including aliphatic and aromatic aldehydes and steroids. Transcript levels for this gene are up-regulated in response to cold, salt, and drought stress.	NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G06885.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-16 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT2G31560.2	protein_coding	Protein of unknown function (DUF1685)		signal transducer/transcription protein, putative (DUF1685);(source:Araport11)
AT2G31600.2	protein_coding			INO80 complex subunit D-like protein;(source:Araport11)
AT2G22740.2	protein_coding	SU(VAR)3-9 homolog 6	Encodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation.  The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs but has a preference for the latter two. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.	SU(VAR)3-9 homolog 6;(source:Araport11)
AT2G22720.2	protein_coding	SPT2 chromatin protein		SPT2 chromatin protein;(source:Araport11)
AT2G22720.3	protein_coding	SPT2 chromatin protein		SPT2 chromatin protein;(source:Araport11)
AT2G29070.2	protein_coding	Ubiquitin fusion degradation UFD1 family protein		Ubiquitin fusion degradation UFD1 family protein;(source:Araport11)
AT2G48100.2	protein_coding	Exonuclease family protein		Exonuclease family protein;(source:Araport11)
AT2G47970.2	protein_coding	Nuclear pore localisation protein NPL4		Nuclear pore localization protein NPL4;(source:Araport11)
AT3G51880.2	protein_coding	high mobility group B1	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.	high mobility group B1;(source:Araport11)
AT3G05860.2	protein_coding	MADS-box transcription factor family protein		MADS-box transcription factor family protein;(source:Araport11)
AT3G05937.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G11200.2	protein_coding	alfin-like 2	Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 2;(source:Araport11)
AT3G50295.1	pseudogene			pseudogene of Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G50210.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G09560.2	protein_coding	Lipin family protein	The PAH1 gene encodes a phosphatidate phosphohydrolase. Mutant analysis revealed its involvement in galactolipid synthesis pathway, and the membrane lipid remodeling. The pah1pah2 double-mutant showed enhanced Al-susceptibility under low-P conditions, but there was no significant differences in Al tolerance between pah1pah2 and wild type when they were grown in a solution containing 35 &#956;M Pi.	Lipin family protein;(source:Araport11)
AT3G30803.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.0e-16 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT3G46600.2	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT3G46110.2	protein_coding	Domain of unknown function (DUF966)	DUF966 domain containing protein, expressed during embryogenesis.	UPSTREAM OF FLC-like protein (DUF966);(source:Araport11)
AT3G46980.2	protein_coding	phosphate transporter 4;3	Encodes an inorganic phosphate transporter (PHT4;3).	phosphate transporter 4;(source:Araport11)
AT3G47165.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.4e-14 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT3G10480.2	protein_coding	NAC domain containing protein 50	Encodes a NAC transcription factor that physically associates with the histone H3K4 demethylase JMJ14 and through that association is involved in transcriptional repression and flowering time control. It binds the NAC-binding site, the Mitochondrial Dysfunction Motif.	NAC domain containing protein 50;(source:Araport11)
AT3G10640.2	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT3G45090.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G45050.4	protein_coding			transmembrane protein;(source:Araport11)
AT3G44590.2	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT3G10250.2	protein_coding	Plant protein 1589 of unknown function		histidine-tRNA ligase;(source:Araport11)
AT3G58510.2	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT3G02180.2	protein_coding	SPIRAL1-like3	SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root,   leaf and petal growth as a result of defective anisotropic cell expansion.	SPIRAL1-like3;(source:Araport11)
AT3G02290.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G57630.2	protein_coding	exostosin family protein	Encodes a glycoprotein glycosyl transferase ExAD. Knockout mutants show truncated root hair phenotype.	exostosin family protein;(source:Araport11)
AT3G61710.2	protein_coding	AUTOPHAGY 6	Encodes autophagy protein 6 (ATG6), required for pollen germination and plant development.	AUTOPHAGY 6;(source:Araport11)
AT3G02540.2	protein_coding	Rad23 UV excision repair protein family	Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.	Rad23 UV excision repair protein family;(source:Araport11)
AT3G45770.2	protein_coding	Polyketide synthase, enoylreductase family protein		Polyketide synthase, enoylreductase family protein;(source:Araport11)
AT3G45775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 9.5e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT3G63290.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G63300.2	protein_coding	FORKED 1	Encodes a pleckstrin homology domain- and DUF828-containing protein. Mutants have defects in leaf vascular pattering, with vascular bundles that fail to meet distally in both the cotyledons and leaves. Necessary to the formation of the closed leaf vascular pattern characteristic of dicot leaves in response to auxin. Redundant with FKD2. FKD1 may influence PIN1 localization in an auxin dependent  manner. proposed to be a key component of the auxin canalization pathway. FORKED-LIKE family member, part of Group 1 (FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	FORKED 1;(source:Araport11)
AT3G63250.2	protein_coding	homocysteine methyltransferase 2	Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.	homocysteine methyltransferase 2;(source:Araport11)
AT3G63260.2	protein_coding	Protein kinase superfamily protein	protein kinase, similar to mammal mixed-lineage kinase and Raf protein kinase	Protein kinase superfamily protein;(source:Araport11)
AT3G63220.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G07930.2	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT3G07930.3	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT3G08030.2	protein_coding	Protein of unknown function, DUF642	The mRNA of this gene is expressed in viable seeds.  Its detection in a dry seed lot has potential for use as a molecular marker for germination performance as absence of expression correlates with decreased germination. Encodes DUF642 cell wall protein.	DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642);(source:Araport11)
AT3G07740.2	protein_coding	homolog of yeast ADA2 2A	encodes a transcriptional adaptor ADA2a that interacts with histone acetyltransferase GCN5 homolog and CBF1	ADA2 2A;(source:Araport11)
AT3G06960.2	protein_coding	pigment defective 320	TGD4 is an integral dimeric beta-barrel lipid transfer protein that binds PtdOH with its N-terminus and contains dimerization domains at its C-terminus. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	pigment defective 320;(source:Araport11)
AT3G59040.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Involved in chloroplast biogenesis and function.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G58975.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box/RNI-like superfamily protein;(source:Araport11)
AT3G08680.2	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G08650.2	protein_coding	ZIP metal ion transporter family		ZIP metal ion transporter family;(source:Araport11)
AT3G50755.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.3e-35 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT3G05725.1	protein_coding	Protein of unknown function (DUF3511)		hypothetical protein (DUF3511);(source:Araport11)
AT3G05560.2	protein_coding	Ribosomal L22e protein family		Ribosomal L22e protein family;(source:Araport11)
AT3G05640.2	protein_coding	Protein phosphatase 2C family protein	EGR1 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress.EGR1 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT3G46385.1	pseudogene			pseudogene of Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G46450.2	protein_coding	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein		SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein;(source:Araport11)
AT3G56130.2	protein_coding	biotin/lipoyl attachment domain-containing protein		biotin/lipoyl attachment domain-containing protein;(source:Araport11)
AT3G56310.2	protein_coding	Melibiase family protein	Member of Glycoside Hydrolase Family 27 (GH27)that functions as an &#945;-galactosidase.	Melibiase family protein;(source:Araport11)
AT3G56277.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.6e-16 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT3G02065.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G55740.2	protein_coding	proline transporter 2	Encodes a proline transporter with affinity for gly betaine, proline, and GABA.  Protein is expressed most highly in the roots.	proline transporter 2;(source:Araport11)
AT3G47675.1	protein_coding			ternary complex factor MIP1 leucine-zipper protein;(source:Araport11)
AT3G47560.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G47550.6	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G47490.2	protein_coding	HNH endonuclease		HNH endonuclease;(source:Araport11)
AT3G03750.2	protein_coding	SET domain protein 20		SET domain protein 20;(source:Araport11)
AT3G03790.2	protein_coding	ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein		ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G62020.2	protein_coding	germin-like protein 10	germin-like protein (GLP10)	germin-like protein 10;(source:Araport11)
AT3G61870.2	protein_coding			plant/protein;(source:Araport11)
AT3G07460.2	protein_coding	Protein of unknown function, DUF538		transmembrane protein, putative (Protein of unknown function, DUF538);(source:Araport11)
AT3G07425.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G05420.2	protein_coding	acyl-CoA binding protein 4	Acyl-CoA binding protein with high affinity for   oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.	acyl-CoA binding protein 4;(source:Araport11)
AT3G05510.2	protein_coding	Phospholipid/glycerol acyltransferase family protein		Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT3G43571.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-57 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G43573.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.7e-27 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G43622.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.7e-37 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G43586.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G43583.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G52390.2	protein_coding	TatD related DNase		TatD related DNase;(source:Araport11)
AT3G52527.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.6e-22 P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa);(source:TAIR10)
AT3G33077.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.7e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G33084.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.6e-186 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G06040.2	protein_coding	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein		Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein;(source:Araport11)
AT3G06080.2	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT3G59890.2	protein_coding	Dihydrodipicolinate reductase, bacterial/plant		Dihydrodipicolinate reductase, bacterial/plant;(source:Araport11)
AT3G57140.2	protein_coding	sugar-dependent 1-like		sugar-dependent 1-like protein;(source:Araport11)
AT3G11540.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling.  Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. SPY may be involved in reducing ROS accumulation in response to stress.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G11620.3	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G11470.2	protein_coding	4'-phosphopantetheinyl transferase superfamily	Encodes one of three splice variants. Differs in having CM in positions 88 and 89. The protein is localized to the mitochondria where it phosphopantetheinylates the mature apo mtACP isoforms. It is an essential gene as homozygous mutants cannot be recovered (embryo lethal).	4-phosphopantetheinyl transferase superfamily;(source:Araport11)
AT3G11385.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G11530.2	protein_coding	Vacuolar protein sorting 55 (VPS55) family protein		Vacuolar protein sorting 55 (VPS55) family protein;(source:Araport11)
AT3G11405.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G11397.1	protein_coding	prenylated RAB acceptor 1.A3		prenylated RAB acceptor 1.A3;(source:Araport11)
AT3G51100.2	protein_coding			altered inheritance of mitochondria protein;(source:Araport11)
AT3G51325.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G51040.2	protein_coding	RTE1-homolog	Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids.	RTE1-homolog;(source:Araport11)
AT3G06435.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT3G59390.2	protein_coding			glycosyltransferase family protein;(source:Araport11)
AT3G59310.2	protein_coding	Eukaryotic protein of unknown function (DUF914)		solute carrier family 35 protein (DUF914);(source:Araport11)
AT3G59320.2	protein_coding	Eukaryotic protein of unknown function (DUF914)		solute carrier family 35 protein (DUF914);(source:Araport11)
AT3G59430.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G11850.2	protein_coding	Protein of unknown function, DUF593		myosin-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT3G11820.2	protein_coding	syntaxin of plants 121	Encodes a syntaxin localized at the plasma membrane. SYR1/PEN1 is a member of the SNARE superfamily and functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling.  Also functions in non-host resistance against barley powdery mildew. It is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. The syp121 point mutation results in stomatal phenotypes that reduce CO2 assimilation, slow vegetative growth and increase water use efficiency in the whole plant, conditional upon high light intensities and low relative humidity. The R20R21 motif of SYP121 are essential for SEC11 interaction. Mutation of the R20R21 motif blocks vesicle traffic without uncoupling the effects of SYP121 on solute and K+ uptake associated with the F9xRF motif; the mutation also mimicks the effects on traffic block observed on coexpression of the dominant negative SEC11?149 fragment.	syntaxin of plants 121;(source:Araport11)
AT3G11890.2	protein_coding	Sterile alpha motif (SAM) domain-containing protein		Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G62800.2	protein_coding	double-stranded-RNA-binding protein 4	Encodes a nuclear dsRNA-binding protein DRB4 that interacts specifically with DCL4.  May regulate DCL4 function and thereby affect miRNA biogenesis. Also has an impact on polymerase IV-dependent siRNA levels. DRB4 interacts with the P6 viral protein from Cauliflower mosaic virus and may be a target of viral silencing suppression.	double-stranded-RNA-binding protein 4;(source:Araport11)
AT3G62650.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G51370.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G55850.2	protein_coding	Amidohydrolase family	Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids.	Amidohydrolase family;(source:Araport11)
AT3G12250.3	protein_coding	TGACG motif-binding factor 6	basic leucine zipper transcription factor involved in the activation of SA-responsive genes.	TGACG motif-binding factor 6;(source:Araport11)
AT3G12250.2	protein_coding	TGACG motif-binding factor 6	basic leucine zipper transcription factor involved in the activation of SA-responsive genes.	TGACG motif-binding factor 6;(source:Araport11)
AT3G01830.2	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G06190.2	protein_coding	BTB-POZ and MATH domain 2	Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 2;(source:Araport11)
AT3G57390.2	protein_coding	AGAMOUS-like 18	encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.	AGAMOUS-like 18;(source:Araport11)
AT3G54970.2	protein_coding	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein		D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT3G54826.1	protein_coding	Zim17-type zinc finger protein		Zim17-type zinc finger protein;(source:Araport11)
AT3G54823.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.4e-203 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT3G61530.2	protein_coding	Phosphoenolpyruvate carboxylase family protein	Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.	Phosphoenolpyruvate carboxylase family protein;(source:Araport11)
AT3G61490.2	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G49307.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT3G49260.2	protein_coding	IQ-domain 21		IQ-domain 21;(source:Araport11)
AT3G52640.2	protein_coding	Zn-dependent exopeptidases superfamily protein	Encodes a gamma-secretase subunit.  Associates with other subunits in intracellular membrane compartments.	Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT3G52705.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.3e-24 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G06790.2	protein_coding	plastid developmental protein DAG, putative	Encodes a protein involved in RNA editing in mitochondria. Member of MORF family consisting of of nine full-length proteins encoded in the nuclear genome. MORF proteins are required for all RNA editing events in plastids and for many, possibly also all, sites in mitochondria. Potential link between the RNA binding PPR protein and the protein contributing the enzymatic activity in RNA editing.	plastid developmental protein DAG;(source:Araport11)
AT3G20650.2	protein_coding	mRNA capping enzyme family protein		mRNA capping enzyme family protein;(source:Araport11)
AT3G09162.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G09410.3	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT3G09150.3	protein_coding	phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)	Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin.  Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase.  It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.	phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2);(source:Araport11)
AT3G52050.2	protein_coding	5'-3' exonuclease family protein		5-3 exonuclease family protein;(source:Araport11)
AT3G52105.1	protein_coding			DIS3-exonuclease-like protein;(source:Araport11)
AT3G53350.2	protein_coding	ROP interactive partner 4	Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.	ROP interactive partner 4;(source:Araport11)
AT3G53350.3	protein_coding	ROP interactive partner 4	Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.	ROP interactive partner 4;(source:Araport11)
AT3G53570.3	protein_coding	FUS3-complementing gene 1	a  member of a CDC2-related kinase subfamily,  the LAMMER kinases. activates STE12-dependent functions in yeast.	serine/threonine-protein kinase AFC1;(source:Araport11)
AT3G01540.3	protein_coding	DEAD box RNA helicase 1	RNA HELICASE DRH1	DEAD box RNA helicase 1;(source:Araport11)
AT3G06590.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes RITF1, a bHLH transcription factor that regulates the transcription of several genes involved in the detoxification of reactive oxygen species generated by salt stress.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G53970.2	protein_coding	proteasome inhibitor-related	PTRE1 was identified as homologous to human PI31. It has a conserved proline-rich domain at the C-terminus and a highly conserved FP (Fbxo7/PI31) dimerization domain at the N-terminus as well as some novel, conserved domains found only in plants. It regulates auxin signaling possibly via its proteosome suppressing activity.	proteasome inhibitor-like protein;(source:Araport11)
AT3G54000.2	protein_coding			TIP41-like protein;(source:Araport11)
AT3G54000.3	protein_coding			TIP41-like protein;(source:Araport11)
AT3G53990.2	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	Encodes universal stress protein (USP). Functions as a molecular chaperone under heat shock and oxidative stress conditions. Chaperone activity and assembly into complexes is redox regulated.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G43303.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G43025.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G43005.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.3e-32 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT3G43128.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 5.1e-95 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G04680.2	protein_coding	CLP-similar protein 3	Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.	CLP-similar protein 3;(source:Araport11)
AT3G04580.2	protein_coding	Signal transduction histidine kinase, hybrid-type, ethylene sensor	Ethylene receptor, subfamily 2. Has serine kinase activity.	Signal transduction histidine kinase, hybrid-type, ethylene sensor;(source:Araport11)
AT3G04600.2	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT3G42726.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.3e-12 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT3G42719.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G42727.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G09830.2	protein_coding	Protein kinase superfamily protein	Encodes a member of subfamily VIIa of the receptor-like cytoplasmic kinases (RLCKs).  It contributes to pattern-triggered immunity in response to P. syringae.	Protein kinase superfamily protein;(source:Araport11)
AT3G09820.2	protein_coding	adenosine kinase 1	Involved in the salvage synthesis of                      adenylates and methyl recycling	adenosine kinase 1;(source:Araport11)
AT3G52940.2	protein_coding	Ergosterol biosynthesis ERG4/ERG24 family	Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo.	Ergosterol biosynthesis ERG4/ERG24 family;(source:Araport11)
AT3G31993.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 3.3e-25 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G31996.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G32020.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G10970.2	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G10915.3	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G10915.2	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G10985.1	protein_coding	senescence associated gene 20	A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis. The mRNA is cell-to-cell mobile.	senescence associated gene 20;(source:Araport11)
AT3G30827.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G30839.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-11 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G18930.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G19000.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G19025.1	pseudogene			pseudogene of alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G17120.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G16895.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT3G15010.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G14930.3	protein_coding	Uroporphyrinogen decarboxylase		Uroporphyrinogen decarboxylase;(source:Araport11)
AT3G27280.2	protein_coding	prohibitin 4	Part of protein complexes that are necessary for proficient mitochondrial function or  biogenesis, thereby supporting cell division and differentiation in apical tissues	prohibitin 4;(source:Araport11)
AT3G13580.3	protein_coding	Ribosomal protein L30/L7 family protein		Ribosomal protein L30/L7 family protein;(source:Araport11)
AT3G13580.2	protein_coding	Ribosomal protein L30/L7 family protein		Ribosomal protein L30/L7 family protein;(source:Araport11)
AT3G27965.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.5e-26 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata);(source:TAIR10)
AT3G15350.2	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT3G15260.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G15358.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G63490.2	protein_coding	Ribosomal protein L1p/L10e family		Ribosomal protein L1p/L10e family;(source:Araport11)
AT3G14110.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis.  Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G20080.3	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 15		cytochrome P450, family 705, subfamily A, polypeptide 15;(source:Araport11)
AT3G20080.2	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 15		cytochrome P450, family 705, subfamily A, polypeptide 15;(source:Araport11)
AT3G20070.2	protein_coding	titan9	Encodes a plant-specific protein of unknown function.  Mutant embryos contain at most four small cells.  The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information.	titan9;(source:Araport11)
AT3G12690.2	protein_coding	AGC kinase 1.5	Encodes a putative serine/threonine kinase It is expressed specifically in pollen and appears to function redundantly with AGC1.7 to regulate polarized growth of pollen tubes.	AGC kinase 1.5;(source:Araport11)
AT3G12690.3	protein_coding	AGC kinase 1.5	Encodes a putative serine/threonine kinase It is expressed specifically in pollen and appears to function redundantly with AGC1.7 to regulate polarized growth of pollen tubes.	AGC kinase 1.5;(source:Araport11)
AT3G22415.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G22420.2	protein_coding	with no lysine (K) kinase 2	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.  Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 2;(source:Araport11)
AT3G18850.2	protein_coding	lysophosphatidyl acyltransferase 5		lysophosphatidyl acyltransferase 5;(source:Araport11)
AT3G17185.1	other_rna	TAS3/TASIR-ARF (TRANS-ACTING SIRNA3); other RNA	Encodes a trans-acting siRNA (tasi-RNA) that regulates the expression of auxin response factor genes (ARF2, ARF4, ETT). One of 3 genomic loci that encode the TAS3 siRNA. Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT3G13870.2	protein_coding	Root hair defective 3 GTP-binding protein (RHD3)	required for regulated cell expansion and normal root hair development. Encodes an evolutionarily conserved protein with putative GTP-binding motifs that is implicated in the control of vesicle trafficking between the endoplasmic reticulum and the Golgi compartments.	Root hair defective 3 GTP-binding protein (RHD3);(source:Araport11)
AT3G13857.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G14000.2	protein_coding	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein;(source:Araport11)
AT3G16460.2	protein_coding	Mannose-binding lectin superfamily protein	Mannose-binding protein	Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G26850.2	protein_coding	histone-lysine N-methyltransferases		histone-lysine N-methyltransferase;(source:Araport11)
AT3G17860.2	protein_coding	jasmonate-zim-domain protein 3	JAZs are direct targets of the SCFCOI1 E3 ubiquitin-ligase and JA treatment  induces their proteasome-mediated degradation. Furthermore, JAI3 negatively  regulates the key transcriptional activator of JA responses, AtMYC2. The C-terminal portion of JAZ3, including the Jas domain, appears to be important for JAZ3-COI1 binding in the presence of coronatine.	jasmonate-zim-domain protein 3;(source:Araport11)
AT3G26605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.4e-51 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G26510.4	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT3G26510.3	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT3G28412.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.3e-08 P-value blast match to GB:AAC34906 reverse transcriptase (LINE-element) (Forficula auricularia);(source:TAIR10)
AT3G13000.2	protein_coding	Protein of unknown function, DUF547		ubiquinone biosynthesis protein (Protein of unknown function, DUF547);(source:Araport11)
AT3G13040.2	protein_coding	myb-like HTH transcriptional regulator family protein		myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT3G14740.2	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G28157.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G21600.2	protein_coding	Senescence/dehydration-associated protein-related		Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT3G13190.2	protein_coding	Plant protein of unknown function (DUF827)		WEB family protein (DUF827);(source:Araport11)
AT3G13080.3	protein_coding	multidrug resistance-associated protein 3	encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites.  The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.	multidrug resistance-associated protein 3;(source:Araport11)
AT3G13080.4	protein_coding	multidrug resistance-associated protein 3	encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites.  The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.	multidrug resistance-associated protein 3;(source:Araport11)
AT3G15430.2	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G15395.1	protein_coding			HrpN-interacting protein from malus protein;(source:Araport11)
AT3G15395.2	protein_coding			HrpN-interacting protein from malus protein;(source:Araport11)
AT3G25180.2	protein_coding	cytochrome P450, family 82, subfamily G, polypeptide 1	Encodes a cytochrome P450 monooxygenase (CYP82G1) that catalyzes the production of two volatile homoterpenes, TMTT and DMNT, although it is only likely to produce TMTT in planta. TMTT can be involved in attracting predatory insects to protect Arabidopsis plants from herbivorous pests. Homoterpene synthesis is also stimulated by fungal elicitors which increase the transcript levels of CYP82G1.	cytochrome P450, family 82, subfamily G, polypeptide 1;(source:Araport11)
AT3G26115.2	protein_coding	Pyridoxal-5'-phosphate-dependent enzyme family protein		Pyridoxal-5-phosphate-dependent enzyme family protein;(source:Araport11)
AT3G17510.2	protein_coding	CBL-interacting protein kinase 1	Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.	CBL-interacting protein kinase 1;(source:Araport11)
AT3G17611.2	protein_coding	RHOMBOID-like protein 14		RHOMBOID-like protein 14;(source:Araport11)
AT3G19400.2	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G19330.2	protein_coding	Protein of unknown function (DUF677)		transmembrane protein, putative (DUF677);(source:Araport11)
AT3G19330.3	protein_coding	Protein of unknown function (DUF677)		transmembrane protein, putative (DUF677);(source:Araport11)
AT3G28917.1	protein_coding	mini zinc finger 2		mini zinc finger 2;(source:Araport11)
AT3G28857.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding family protein	Encodes a atypical member of the bHLH (basic helix-loop-helix) family transcriptional factors.	basic helix-loop-helix (bHLH) DNA-binding family protein;(source:Araport11)
AT3G26670.3	protein_coding	Protein of unknown function (DUF803)		magnesium transporter, putative (DUF803);(source:Araport11)
AT3G14350.3	protein_coding	STRUBBELIG-receptor family 7		STRUBBELIG-receptor family 7;(source:Araport11)
AT3G14350.2	protein_coding	STRUBBELIG-receptor family 7		STRUBBELIG-receptor family 7;(source:Araport11)
AT3G07650.2	protein_coding	CONSTANS-like 9	This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO. The mRNA is cell-to-cell mobile.	CONSTANS-like 9;(source:Araport11)
AT3G07630.2	protein_coding	arogenate dehydratase 2	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis.  Not less than six genes encoding ADT were identi&#64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	arogenate dehydratase 2;(source:Araport11)
AT3G29270.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G28130.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G28070.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G27997.1	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT3G13672.2	protein_coding	TRAF-like superfamily protein	SINAT homolog with truncated RING finger and zinc finger domains.	TRAF-like superfamily protein;(source:Araport11)
AT3G22260.2	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G24560.3	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	novel gene involved in embryogenesis	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G24560.2	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein	novel gene involved in embryogenesis	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G25900.2	protein_coding	Homocysteine S-methyltransferase family protein		Homocysteine S-methyltransferase family protein;(source:Araport11)
AT3G26100.2	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G20320.2	protein_coding	trigalactosyldiacylglycerol2	Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	trigalactosyldiacylglycerol2;(source:Araport11)
AT3G30582.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.9e-156 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G30587.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G18160.2	protein_coding	peroxin 3-1		peroxin 3-1;(source:Araport11)
AT3G18040.2	protein_coding	MAP kinase 9	Encodes a protein with similarity to MAP kinases (MAPK9).Expressed preferentially in guard cells and appears to be involved in reactive oxygen species mediated ABA signaling.	MAP kinase 9;(source:Araport11)
AT3G13560.3	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT3G13560.2	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT3G21070.2	protein_coding	NAD kinase 1	Encodes a protein with NAD(H) kinase activity.	NAD kinase 1;(source:Araport11)
AT3G21710.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G21730.2	protein_coding	Dihydroneopterin aldolase		Dihydroneopterin aldolase;(source:Araport11)
AT3G26180.2	protein_coding	cytochrome P450, family 71, subfamily B, polypeptide 20	putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 20;(source:Araport11)
AT3G24120.2	protein_coding	Homeodomain-like superfamily protein	MYB-CC protein involved in regulation of response to phosphate starvation.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G19150.2	protein_coding	KIP-related protein 6	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division.  Binds to D type cyclins. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. KRP6 appears to be targeted for degradation by RHF1a and RHF2a to allow mitotic divisions during gametogenesis. In addition, KRP6 transcript levels rise prior to and drop following the meitotic divisions of gametogenesis. Elevated levels of KRP6 negatively affect plant development and fertility.	KIP-related protein 6;(source:Araport11)
AT3G25560.2	protein_coding	NSP-interacting kinase 2		NSP-interacting kinase 2;(source:Araport11)
AT3G23050.2	protein_coding	indole-3-acetic acid 7	Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. Pseudomonas syringae type III effector AvrRpt2 stimulates AXR2 protein turnover.	indole-3-acetic acid 7;(source:Araport11)
AT3G29160.2	protein_coding	SNF1 kinase homolog 11	encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1.  It has also been shown to interact with the WD protein PDL1.	SNF1 kinase homolog 11;(source:Araport11)
AT3G29160.3	protein_coding	SNF1 kinase homolog 11	encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1.  It has also been shown to interact with the WD protein PDL1.	SNF1 kinase homolog 11;(source:Araport11)
AT3G18380.2	protein_coding	sequence-specific DNA binding transcription factors;sequence-specific DNA binding		DNA-BINDING TRANSCRIPTION FACTOR 2;(source:Araport11)
AT3G09100.2	protein_coding	mRNA capping enzyme family protein		mRNA capping enzyme family protein;(source:Araport11)
AT3G09032.1	protein_coding			josephin-like protein;(source:Araport11)
AT3G44325.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.4e-28 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT3G44264.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.7e-99 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT3G44262.1	pseudogene			pseudogene of subtilisin-like serine protease 2;(source:Araport11)
AT3G44245.1	pseudogene			pseudogene of cytochrome P450;(source:Araport11)
AT3G44267.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.1e-114 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G58030.2	protein_coding	RING/U-box superfamily protein	Encodes a RING domain E3 ligase. Has overlapping function with MUSE2 in the negative regulation of defence responses. SIKIC2 (and possibly SIKIC1 and 3) is ubiquination target.	RING/U-box superfamily protein;(source:Araport11)
AT3G58030.3	protein_coding	RING/U-box superfamily protein	Encodes a RING domain E3 ligase. Has overlapping function with MUSE2 in the negative regulation of defence responses. SIKIC2 (and possibly SIKIC1 and 3) is ubiquination target.	RING/U-box superfamily protein;(source:Araport11)
AT3G04030.2	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G03970.2	protein_coding	ARM repeat superfamily protein	At3G03970 encodes the plant KASH protein SINE2; SINE2 interacts with SUN1 and SUN2 and is localized at the nuclear envelope.	ARM repeat superfamily protein;(source:Araport11)
AT3G03970.3	protein_coding	ARM repeat superfamily protein	At3G03970 encodes the plant KASH protein SINE2; SINE2 interacts with SUN1 and SUN2 and is localized at the nuclear envelope.	ARM repeat superfamily protein;(source:Araport11)
AT3G62475.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.3e-55 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT3G54320.2	protein_coding	Integrase-type DNA-binding superfamily protein	WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation. Splice form 3 is the major form expressed in seedlings.Mutations in the C terminal intrinsically disordered region increase the stability of WRI1 and lead to increased oil production.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G05220.2	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G05165.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G29550.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.7e-22 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT3G29545.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G01311.1	protein_coding	Protein of unknown function (DUF569)		actin cross-linking protein, putative (DUF569);(source:Araport11)
AT3G01435.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT3G01345.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT3G01325.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT3G54450.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G54500.2	protein_coding		Member of a small family (4 proteins) in Arabidopsis that have some overlap in function. LNK2 along with LNK1  functions in the integration of light signaling and circadian clock. It is regulated by  the clock TOC1 complex. Functions as a transcriptional coactivator.	agglutinin-like protein;(source:Araport11)
AT3G44005.1	pseudogene			pseudogene of Mitochondrial transcription termination factor family protein;(source:Araport11)
AT3G44045.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.6e-08 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster);(source:TAIR10)
AT3G55050.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G55010.2	protein_coding	phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)	encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)	phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5);(source:Araport11)
AT3G49765.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.7e-20 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT3G59680.2	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT3G59530.2	protein_coding	Calcium-dependent phosphotriesterase superfamily protein		Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT3G08840.3	protein_coding	D-alanine--D-alanine ligase family		D-alanine-D-alanine ligase family;(source:Araport11)
AT3G08840.2	protein_coding	D-alanine--D-alanine ligase family		D-alanine-D-alanine ligase family;(source:Araport11)
AT3G47965.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G47875.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.1e-40 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT3G43540.2	protein_coding	Protein of unknown function (DUF1350)		initiation factor 4F subunit (DUF1350);(source:Araport11)
AT3G51750.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G07270.2	protein_coding	GTP cyclohydrolase I		GTP cyclohydrolase I;(source:Araport11)
AT3G07180.2	protein_coding	GPI transamidase component PIG-S-related		GPI transamidase component PIG-S-like protein;(source:Araport11)
AT3G50625.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.1e-96 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT3G61240.2	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT3G61160.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G58810.2	protein_coding	metal tolerance protein A2	Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high  rates of Zn influx into the root symplasm. Localizes to  the vacuolar membrane.	metal tolerance protein A2;(source:Araport11)
AT3G42836.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.5e-21 P-value blast match to MVA11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT3G14860.2	protein_coding	NHL domain-containing protein		NHL domain-containing protein;(source:Araport11)
AT3G14850.2	protein_coding	TRICHOME BIREFRINGENCE-LIKE 41	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 41;(source:Araport11)
AT3G48820.2	protein_coding	Glycosyltransferase family 29 (sialyltransferase) family protein	Encodes a homolog of the animal sialyltransferases but sialyltransferase activity was not detected (Plant Biology 2009, 11:284).  Located in the Golgi apparatus.	Glycosyltransferase family 29 (sialyltransferase) family protein;(source:Araport11)
AT3G31422.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 4.9e-70 P-value blast match to GB:CAA38906 Tam3-transposase (hAT-element) (Antirrhinum majus);(source:TAIR10)
AT3G55370.2	protein_coding	OBF-binding protein 3	Encodes a nuclear localized Dof domain containing transcription factor expressed primarily in roots. Responsive to salicylic acid. Transgenic overexpressors have yellow leaves and short, defective roots.	OBF-binding protein 3;(source:Araport11)
AT3G55480.2	protein_coding	protein affected traf&#64257;cking 2	Encodes PAT2, a putative beta-subunit of adaptor protein complex 3 (AP-3) that can partially complement the corresponding yeast mutant. Mediates the biogenesis and function of lytic vacuoles.	protein affected traf%26#64257;(source:Araport11)
AT3G44425.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.1e-41 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT3G44420.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G47810.3	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein	Homolog of yeast retromer subunit VPS29.  Part of a retromer-like protein complex involved in endosome to lysosome protein transport.	Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT3G47810.2	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein	Homolog of yeast retromer subunit VPS29.  Part of a retromer-like protein complex involved in endosome to lysosome protein transport.	Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT3G52340.2	protein_coding	sucrose-6F-phosphate phosphohydrolase 2	sucrose-phosphatase (SPP2)	sucrose-6F-phosphate phosphohydrolase 2;(source:Araport11)
AT3G52260.2	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT3G55290.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G55140.2	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G55170.2	protein_coding	Ribosomal L29 family protein 		Ribosomal L29 family protein;(source:Araport11)
AT3G42150.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G04380.2	protein_coding	SET-domain containing protein lysine methyltransferase family protein	Encodes SUVR4, a nucleolar histone methyltransferase with preference for monomethylated H3K9.  One of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT3G60935.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.9e-127 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT3G60965.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.8e-146 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT3G61060.2	protein_coding	phloem protein 2-A13		phloem protein 2-A13;(source:Araport11)
AT3G43740.2	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G43826.1	pseudogene			pseudogene of P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G43790.2	protein_coding	zinc induced facilitator-like 2		zinc induced facilitator-like 2;(source:Araport11)
AT3G43790.3	protein_coding	zinc induced facilitator-like 2		zinc induced facilitator-like 2;(source:Araport11)
AT3G43828.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 5.8e-16 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT3G43832.1	pseudogene			pseudogene of carboxyl-terminal peptidase (DUF239);(source:Araport11)
AT3G48380.2	protein_coding	Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2		Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2;(source:Araport11)
AT3G12570.3	protein_coding	FYD		FYD;(source:Araport11)
AT3G44785.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT3G60810.2	protein_coding			DUF1499 family protein;(source:Araport11)
AT3G53232.1	protein_coding	ROTUNDIFOLIA like 1		ROTUNDIFOLIA like 1;(source:Araport11)
AT3G53270.4	protein_coding	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein		Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein;(source:Araport11)
AT3G01060.3	protein_coding			lysine-tRNA ligase;(source:Araport11)
AT3G01060.2	protein_coding			lysine-tRNA ligase;(source:Araport11)
AT3G43357.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.3e-50 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G43359.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative helicase, blastp match of 49%25 identity and 3.0e-51 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT3G43358.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.8e-69 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT3G43356.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.2e-93 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G43352.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.6e-09 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT3G43425.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.2e-17 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT3G54780.2	protein_coding	Zinc finger (C3HC4-type RING finger) family protein		Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT3G56580.2	protein_coding	RING/U-box superfamily protein	Encodes a functional E3 ubiquitin ligase involved in the dehydration stress response and regulation of proline biosynthesis.	RING/U-box superfamily protein;(source:Araport11)
AT3G43147.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G10815.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G60500.2	protein_coding	3'-5'-exoribonuclease family protein	Encodes a 3'-5' exoribonuclease, positively regulates CER3 transcription, involved in cuticular wax biosynthesis.	3-5-exoribonuclease family protein;(source:Araport11)
AT3G60590.3	protein_coding			cytochrome P450 family protein;(source:Araport11)
AT3G60410.2	protein_coding	Protein of unknown function (DUF1639)		hypothetical protein (DUF1639);(source:Araport11)
AT3G60565.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.6e-249 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT3G60540.2	protein_coding	Preprotein translocase Sec, Sec61-beta subunit protein		Preprotein translocase Sec, Sec61-beta subunit protein;(source:Araport11)
AT3G66654.2	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G66654.3	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G66658.2	protein_coding	aldehyde dehydrogenase 22A1	Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures.	aldehyde dehydrogenase 22A1;(source:Araport11)
AT3G08505.2	protein_coding	zinc finger (CCCH-type/C3HC4-type RING finger) family protein		zinc finger (CCCH-type/C3HC4-type RING finger) family protein;(source:Araport11)
AT3G57520.3	protein_coding	seed imbibition 2	SIP2 encodes a raffinose-specific alpha-galactosidase that catalyzes the breakdown of raffinose into alpha-galatose and sucrose. This enzyme may function in unloading raffinose from the phloem as part of sink metabolism. Although it was originally predicted to act as a raffinose synthase (RS), that activity was not observed for recombinant SIP2.	seed imbibition 2;(source:Araport11)
AT3G32023.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.7e-54 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G32027.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT3G32033.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.2e-19 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT3G48523.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT3G48526.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.7e-41 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT3G48670.2	protein_coding	XH/XS domain-containing protein	Encodes IDN2 (INVOLVED IN DE NOVO 2), a double-stranded RNA-binding protein involved in de novo methylation and small interfering RNA (siRNA)-mediated maintenance methylation. IND2 is a component of the RNA-directed DNA methylation pathway.	XH/XS domain-containing protein;(source:Araport11)
AT3G04870.2	protein_coding	zeta-carotene desaturase	Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.	zeta-carotene desaturase;(source:Araport11)
AT3G04810.2	protein_coding	NIMA-related kinase 2	Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 2;(source:Araport11)
AT3G04970.2	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT4G36690.3	protein_coding	U2 snRNP auxilliary factor, large subunit, splicing factor	Regulates flowering time and displays a redundant role in pollen tube growth together with AtU2AF65b.	U2 snRNP auxilliary factor, large subunit, splicing factor;(source:Araport11)
AT4G37210.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G36400.2	protein_coding	FAD-linked oxidases family protein	Encodes a (D)-2-hydroxyglutarate dehydrogenase.	FAD-linked oxidases family protein;(source:Araport11)
AT4G37080.2	protein_coding	Protein of unknown function, DUF547		ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT4G36515.1	protein_coding			trichohyalin-like protein;(source:Araport11)
AT4G37235.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G05000.2	protein_coding	Vacuolar protein sorting-associated protein VPS28 family protein		Vacuolar protein sorting-associated protein VPS28 family protein;(source:Araport11)
AT4G05306.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.4e-82 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G05040.2	protein_coding	ankyrin repeat family protein		ankyrin repeat family protein;(source:Araport11)
AT4G05303.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43370.1);(source:TAIR10)
AT4G05320.5	protein_coding	polyubiquitin 10	One of five polyubiquitin genes in A. thaliana.  These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. The mRNA is cell-to-cell mobile.	polyubiquitin 10;(source:Araport11)
AT4G07688.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.3e-06 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G07713.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-21 P-value blast match to O81510 /24-166 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G07738.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.2e-18 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G07686.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G34430.4	protein_coding	DNA-binding family protein	Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002).	DNA-binding family protein;(source:Araport11)
AT4G34310.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G34240.2	protein_coding	aldehyde dehydrogenase 3I1	Encodes an aldehyde dehydrogenase induced by ABA and dehydration that can oxidize saturated aliphatic aldehydes. It is also able to oxidize beta-unsaturated aldehydes, but not aromatic aldehydes. ALDH3I1 was able to use both NAD+ and NADP+ as cofactors.	aldehyde dehydrogenase 3I1;(source:Araport11)
AT4G34265.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G27050.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G26710.2	protein_coding	ATPase, V0 complex, subunit E		ATPase, V0 complex, subunit E;(source:Araport11)
AT4G32215.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.1e-09 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT4G32330.2	protein_coding	TPX2 (targeting protein for Xklp2) protein family	WDL5 is an target of EIN3 that co-localizes with cortical microtubles. It its thought to function to stabilize microtubles during ethylene induced hypocotyl elongation.	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT4G32030.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G31790.2	protein_coding	Tetrapyrrole (Corrin/Porphyrin) Methylases		Tetrapyrrole (Corrin/Porphyrin) Methylase;(source:Araport11)
AT4G31860.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT4G31877.1	miRNA_primary_transcript	MIR156C; miRNA	Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC. Pri-mRNA coordinates for MIR156c (converted to TAIR10 based on PMID19304749): Chr4: 15415873-15413295 (reverse), length: 2580 bp; exon coordinates: exon 1: 15415873 to 15415333, exon 2: 15414352 to 15414313, exon 3: 15413822 to 15413759, exon 4: 15413594 to 15413295; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR156c precursor;(source:Araport11)
AT4G01515.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.1e-18 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT4G01450.3	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G19003.2	protein_coding	E2F/DP family winged-helix DNA-binding domain		E2F/DP family winged-helix DNA-binding domain-containing protein;(source:Araport11)
AT4G06623.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06621.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06480.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G24972.1	protein_coding	tapetum determinant 1	Encodes a novel small protein which is similar to proteins of unknown function from other plant species. TPD1 is involved in cell specification during anther and pollen development. Identified in a screen for male steriles. Mutants lack tapetal cells and have an increased number of microsporocytes. Expressed in flower buds, leaves and young seedlings. In anthers, TPD1 is expressed throughout pollen development in parietal cells and sporocytes. Physically interacts with the LRR kinase EMS1 and that interaction results in phosphorylation of TPD1.	tapetum determinant 1;(source:Araport11)
AT4G25030.2	protein_coding		Plastid localized protein of unknown function. Mutants are more susceptible to P. syringae and produce less callose upon infection.	Serine/Threonine-kinase;(source:Araport11)
AT4G25880.2	protein_coding	pumilio 6	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 6;(source:Araport11)
AT4G35430.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G35500.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G28790.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G28760.2	protein_coding	Protein of unknown function (DUF3741)		methyl-coenzyme M reductase II subunit gamma, putative (DUF3741);(source:Araport11)
AT4G28706.3	protein_coding	pfkB-like carbohydrate kinase family protein		pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT4G23470.2	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT4G23515.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT4G23340.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G23420.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G11970.2	protein_coding	YTH family protein		YTH family protein;(source:Araport11)
AT4G12030.2	protein_coding	bile acid transporter 5	Required for the biosynthesis of methionine-derived glucosinolates. Involved in the  transport of 2-keto acids between chloroplasts and the cytosol.	bile acid transporter 5;(source:Araport11)
AT4G12135.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.1e-16 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G11945.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein, similar to transposases;(source:TAIR10)
AT4G29210.2	protein_coding	gamma-glutamyl transpeptidase 4	The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the vacuole and is most active in roots. The encoded enzyme is involved in the initial degradation of glutathione conjugates in this cell compartment. It is also induced by xenobiotics and contributes to xenobiotics metabolism.  Note that conflicting nomenclature exists in the literature: At4g29210 is named as GGT3 in Plant J. 2007 Mar 49(5):878-88;  At4g29210 is named as GGT4 and At1g69820 as GGT3 in Plant Physiol. 2007 Aug 144(4):1715-32.	gamma-glutamyl transpeptidase 4;(source:Araport11)
AT4G09760.3	protein_coding	Protein kinase superfamily protein	encodes a choline synthase whose gene expression is induced by high salt and mannitol.	Protein kinase superfamily protein;(source:Araport11)
AT4G30410.2	protein_coding	sequence-specific DNA binding transcription factors		sequence-specific DNA binding transcription factor;(source:Araport11)
AT4G30510.2	protein_coding	homolog of yeast autophagy 18 (ATG18) B		yeast autophagy 18 B-like protein;(source:Araport11)
AT4G33890.2	protein_coding			transcriptional regulator of RNA polII, SAGA, subunit;(source:Araport11)
AT4G21560.3	protein_coding	vacuolar protein sorting-associated protein 28 homolog 1		vacuolar protein sorting-associated protein-like protein;(source:Araport11)
AT4G21800.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes QQT2.  Required for early embryo development.  qqt1 mutant lines are embryo-defective.  Participates in the organization of microtubules during cell division.  Interacts with QQT1 (encoded by AT5G22370).	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G33520.2	protein_coding	P-type ATP-ase 1	Encodes a putative metal-transporting P-type ATPase PAA1.  An alternative-splicing event of the PAA1 pre-mRNA produces a copper chaperon named PCH1. The mRNA is cell-to-cell mobile.	P-type ATP-ase 1;(source:Araport11)
AT4G33520.3	protein_coding	P-type ATP-ase 1	Encodes a putative metal-transporting P-type ATPase PAA1.  An alternative-splicing event of the PAA1 pre-mRNA produces a copper chaperon named PCH1. The mRNA is cell-to-cell mobile.	P-type ATP-ase 1;(source:Araport11)
AT4G13266.1	protein_coding			ankyrin repeat protein;(source:Araport11)
AT4G13264.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.3e-23 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G13730.2	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT4G13870.2	protein_coding	Werner syndrome-like exonuclease	Encodes a protein with homology to the exonuclease domain of hWRN-p of human protein Werner Syndrome Exonuclease (WEX). Forms a complex with the heterodimeric factor Ku. The interaction with KU stimulates WEX exonuclease activity.	Werner syndrome-like exonuclease;(source:Araport11)
AT4G21450.2	protein_coding	PapD-like superfamily protein		PapD-like superfamily protein;(source:Araport11)
AT4G20020.2	protein_coding		Encodes a protein involved in RNA editing in mitochondria. Member of MORF family consisting of of nine full-length proteins encoded in the nuclear genome. MORF proteins are required for all RNA editing events in plastids and for many, possibly also all, sites in mitochondria. Potential link between the RNA binding PPR protein and the protein contributing the enzymatic activity in RNA editing.	multiple organellar RNA editing factor;(source:Araport11)
AT4G19910.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT4G19925.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT4G29160.2	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT4G37670.2	protein_coding	N-acetyl-l-glutamate synthase 2		N-acetyl-l-glutamate synthase 2;(source:Araport11)
AT4G38970.2	protein_coding	fructose-bisphosphate aldolase 2	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	fructose-bisphosphate aldolase 2;(source:Araport11)
AT4G38930.2	protein_coding	Ubiquitin fusion degradation UFD1 family protein		Ubiquitin fusion degradation UFD1 family protein;(source:Araport11)
AT4G06586.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06615.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06617.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-37 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G06619.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-28 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G08033.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G08022.1	pseudogene			pseudogene of ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT4G07967.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G22065.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.5e-09 P-value blast match to GB:AAB51275 reverse transcriptase, gag, polyprotein (Ty1_Copia-element) (Volvox carteri f. nagariensis);(source:TAIR10)
AT4G22110.2	protein_coding	GroES-like zinc-binding dehydrogenase family protein		GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT4G26070.3	protein_coding	MAP kinase/ ERK kinase 1	Member of MAP Kinase Kinase.  Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding.	MAP kinase/ ERK kinase 1;(source:Araport11)
AT4G38160.2	protein_coding	Mitochondrial transcription termination factor family protein	Encodes a member of the mitochondrial transcription termination factor family. MTERF6 is localized to both the mitochondria and chloroplast. It is required for ILE tRNA maturation during chloroplast development. Loss of function of MTERF6 results in plants with defective chloroplasts or reduced rate of photosynthesis when MTERF6 expression is low.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT4G38060.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G38225.3	protein_coding			glycerol kinase;(source:Araport11)
AT4G38225.2	protein_coding			glycerol kinase;(source:Araport11)
AT4G38520.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT4G38510.2	protein_coding	ATPase, V1 complex, subunit B protein	One of three genes encoding the vacuolar ATP synthase subunit B1.  The protein binds to and co-localizes with F-actin, bundles F-actin to form higher-order structure, and stabilizes actin filaments in vitro.	ATPase, V1 complex, subunit B protein;(source:Araport11)
AT4G28405.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT4G20830.2	protein_coding	FAD-binding Berberine family protein	Encodes an oligogalacturonide oxidase that inactivates the elicitor-active oligogalacturonides (OGs). It is involved in plant immunity. Overexpressing plants are more resistant to B. cinerea.	FAD-binding Berberine family protein;(source:Araport11)
AT4G05635.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.6e-58 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G38360.2	protein_coding	Protein of unknown function (DUF300)	LAZ1 is a DUF300 domain protein that appears to function in vacuolar transport effecting brassinosteroid and programmed cell dealth signaling pathways.	organic solute transporter ostalpha protein (DUF300);(source:Araport11)
AT4G24730.2	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like protein;(source:Araport11)
AT4G24740.2	protein_coding	FUS3-complementing gene 2	a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.	LAMMER-type protein kinase AFC2;(source:Araport11)
AT4G24670.2	protein_coding	tryptophan aminotransferase related 2	Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.TAR2 is required for reprogramming root architecture in response to low nitrogen conditions.	tryptophan aminotransferase related 2;(source:Araport11)
AT4G35350.2	protein_coding	xylem cysteine peptidase 1	tracheary element vacuolar protein	xylem cysteine peptidase 1;(source:Araport11)
AT4G35290.2	protein_coding	glutamate receptor 2	Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family	glutamate receptor 2;(source:Araport11)
AT4G08980.3	protein_coding	F-BOX WITH WD-40 2	Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response. It is a F-box subunit of the SCF E3 ubiquitin ligase complex that mediates the degradation of 14-3-3 proteins.	F-BOX WITH WD-40 2;(source:Araport11)
AT4G39540.2	protein_coding	shikimate kinase 2	Encodes a shikimate kinase. Its transcripts appear to be expressed in vegetative tissues and developing embryos. SK2 transcript levels rise in response to Phytophthora infestans spores. SK2 is believed to be localized to the chloroplast.	shikimate kinase 2;(source:Araport11)
AT4G39560.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G39640.2	protein_coding	gamma-glutamyl transpeptidase 1	The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is  located in  vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.	gamma-glutamyl transpeptidase 1;(source:Araport11)
AT4G39370.2	protein_coding	ubiquitin-specific protease 27	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 27;(source:Araport11)
AT4G25300.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G25315.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT4G12915.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-20 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G10840.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G10895.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT4G10970.2	protein_coding		UAP56-interacting factor1, binds single stranded RNA and, along with UIEF2,,appears to play a role in nuclear export of RNA.	ribosome maturation factor;(source:Araport11)
AT4G10970.3	protein_coding		UAP56-interacting factor1, binds single stranded RNA and, along with UIEF2,,appears to play a role in nuclear export of RNA.	ribosome maturation factor;(source:Araport11)
AT4G28300.2	protein_coding	Protein of unknown function (DUF1421)	Encodes a protein with 13.6% proline amino acids that is predicted to localize to the cell wall. The mRNA is cell-to-cell mobile.	formin-like protein (DUF1421);(source:Araport11)
AT4G32900.2	protein_coding	Peptidyl-tRNA hydrolase II (PTH2) family protein		Peptidyl-tRNA hydrolase II (PTH2) family protein;(source:Araport11)
AT4G33050.3	protein_coding	calmodulin-binding family protein	Encodes a calmodulin-binding protein involved in stomatal movement.	calmodulin-binding family protein;(source:Araport11)
AT4G33050.2	protein_coding	calmodulin-binding family protein	Encodes a calmodulin-binding protein involved in stomatal movement.	calmodulin-binding family protein;(source:Araport11)
AT4G29950.2	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT4G27415.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G27415.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G18740.2	protein_coding	Rho termination factor		Rho termination factor;(source:Araport11)
AT4G34090.2	protein_coding			cyclin delta-3;(source:Araport11)
AT4G07339.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.1e-75 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G07415.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.5e-148 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G18580.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G10170.2	protein_coding	SNARE-like superfamily protein		SNARE-like superfamily protein;(source:Araport11)
AT4G01060.2	protein_coding	CAPRICE-like MYB3	Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.	CAPRICE-like MYB3;(source:Araport11)
AT4G01430.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	Encodes a plasma membrane-localized amino acid transporter likely involved in amino acid export in the developing seed.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G31430.2	protein_coding		Encodes a plant-specific protein that physically interacts with CRWN1 and its homolog CRWN4 and localizes at the inner nuclear membrane. KAKU4 deforms the nuclear envelope in a dose-dependent manner, in association with nuclear membrane invagination and stack formation.	flocculation protein;(source:Araport11)
AT4G31420.2	protein_coding	Zinc finger protein 622		Zinc finger protein 622;(source:Araport11)
AT4G35785.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G03410.2	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT4G32650.2	protein_coding	potassium channel in Arabidopsis thaliana 3	Encodes KAT3, a member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. The Shaker family K+ ion channels include five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inwardly rectifying conductance): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).	potassium channel protein;(source:Araport11)
AT4G32660.2	protein_coding	Protein kinase superfamily protein	Encodes protein kinase AME3.	Protein kinase superfamily protein;(source:Araport11)
AT4G32730.2	protein_coding	Homeodomain-like protein	Encodes a putative c-myb-like transcription factor with three MYB repeats.	Homeodomain-like protein;(source:Araport11)
AT4G32590.2	protein_coding	2Fe-2S ferredoxin-like superfamily protein		2Fe-2S ferredoxin-like superfamily protein;(source:Araport11)
AT4G32590.3	protein_coding	2Fe-2S ferredoxin-like superfamily protein		2Fe-2S ferredoxin-like superfamily protein;(source:Araport11)
AT4G04547.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.9e-68 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G33130.2	protein_coding			rho GTPase-activating protein;(source:Araport11)
AT4G00335.2	protein_coding	RING-H2 finger B1A		RING-H2 finger B1A;(source:Araport11)
AT4G00430.2	protein_coding	plasma membrane intrinsic protein 1;4	a member of the plasma membrane intrinsic protein subfamily PIP1.	plasma membrane intrinsic protein 1;(source:Araport11)
AT4G07795.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, replication protein A1;(source:TAIR10)
AT4G31120.2	protein_coding	SHK1 binding protein 1	Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.	SHK1 binding protein 1;(source:Araport11)
AT4G31150.2	protein_coding	endonuclease V family protein		endonuclease V family protein;(source:Araport11)
AT4G31170.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G31190.1	pseudogene			pseudogene of SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein;(source:Araport11)
AT4G30890.2	protein_coding	ubiquitin-specific protease 24	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 24;(source:Araport11)
AT4G31010.2	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	Encodes a nuclear CRM protein required for the processing of many mitochondrial introns. It is involved in the biogenesis of respiratory complexes I and IV in Arabidopsis.	RNA-binding CRS1 / YhbY (CRM) domain-containing protein;(source:Araport11)
AT4G30850.2	protein_coding	heptahelical transmembrane  protein2	heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors	heptahelical transmembrane protein2;(source:Araport11)
AT4G31020.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G24820.2	protein_coding	26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain		26S proteasome regulatory subunit Rpn7;(source:Araport11)
AT4G00560.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G00560.3	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G00500.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G22820.2	protein_coding	A20/AN1-like zinc finger family protein	A member of the A20/AN1 zinc finger protein family involved in stress response.Expression is increased in response to water, salt , pathogen and other stressors.SAP9 can  pull down both K48-linked and K63- linked tetraubiquitin chains and functions as a E3 ubiquitin ligase suggesting a role in proteasome-dependent protein degradation.	A20/AN1-like zinc finger family protein;(source:Araport11)
AT4G21160.3	protein_coding	Calcium-dependent ARF-type GTPase activating protein family	ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	Calcium-dependent ARF-type GTPase activating protein family;(source:Araport11)
AT4G21160.4	protein_coding	Calcium-dependent ARF-type GTPase activating protein family	ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	Calcium-dependent ARF-type GTPase activating protein family;(source:Araport11)
AT4G21215.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G22540.2	protein_coding	OSBP(oxysterol binding protein)-related protein 2A		OSBP(oxysterol binding protein)-related protein 2A;(source:Araport11)
AT4G22415.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.8e-181 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G10430.3	protein_coding	TMPIT-like protein		TMPIT-like protein;(source:Araport11)
AT4G10430.2	protein_coding	TMPIT-like protein		TMPIT-like protein;(source:Araport11)
AT4G32440.2	protein_coding	Plant Tudor-like RNA-binding protein		Plant Tudor-like RNA-binding protein;(source:Araport11)
AT4G32460.2	protein_coding	Protein of unknown function, DUF642	BDX is a DUF642 cell wall protein primarily expressed in vascular tissues of roots, leaves and embryos. Mutants show defects in seed and embryo development.	choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT4G31200.3	protein_coding	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein;(source:Araport11)
AT4G31240.2	protein_coding	protein kinase C-like zinc finger protein		protein kinase C-like zinc finger protein;(source:Araport11)
AT4G11211.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G23750.2	protein_coding	cytokinin response factor 2	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Monopteros target gene. CRF proteins relocalize to the nucleus in response to cytokinin.	cytokinin response factor 2;(source:Araport11)
AT4G20365.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.7e-254 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT4G03510.2	protein_coding	RING membrane-anchor 1	RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity.	RING membrane-anchor 1;(source:Araport11)
AT4G08135.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-10 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G30200.3	protein_coding	vernalization5/VIN3-like	Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.	vernalization5/VIN3-like protein;(source:Araport11)
AT4G16845.2	protein_coding	VEFS-Box of polycomb protein	The VERNALIZATION2 (VRN2) gene mediates vernalization and encodes a nuclear-localized zinc finger protein with similarity to Polycomb group (PcG) proteins of plants and animals. In wild-type Arabidopsis, vernalization results in the stable reduction of the levels of the floral repressor FLC. In vrn2 mutants, FLC expression is downregulated normally in response to vernalization, but instead of remaining low, FLC mRNA levels increase when plants are returned to normal temperatures. VRN2 maintains FLC repression after a cold treatment, serving as a mechanism for the cellular memory of vernalization. Required for complete repression of FLC. Required for the methylation of histone H3	VEFS-Box of polycomb protein;(source:Araport11)
AT4G14210.2	protein_coding	phytoene desaturase 3	Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.	phytoene desaturase 3;(source:Araport11)
AT4G16420.2	protein_coding	homolog of yeast ADA2 2B	Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations.	ADA2 2B;(source:Araport11)
AT4G16420.3	protein_coding	homolog of yeast ADA2 2B	Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations.	ADA2 2B;(source:Araport11)
AT4G15010.2	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G15010.3	protein_coding	Mitochondrial substrate carrier family protein		Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G15510.2	protein_coding	Photosystem II reaction center PsbP family protein	A nuclear-encoded thylakoid lumenal protein that is associated with photosystem I (PSI) but is not an integral subunit of PSI.  It is an PSI assembly factor that assists the proper folding and integration of PsaB and PsaA into the thylakoid membrane. It is involved in the assembly of PSI reaction center heterodimer core.	Photosystem II reaction center PsbP family protein;(source:Araport11)
AT4G17190.2	protein_coding	farnesyl diphosphate synthase 2	Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis.  Its mRNA is most abundantly expressed in flowers.	farnesyl diphosphate synthase 2;(source:Araport11)
AT4G14160.3	protein_coding	Sec23/Sec24 protein transport family protein		Sec23/Sec24 protein transport family protein;(source:Araport11)
AT4G14905.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G16695.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G17615.2	protein_coding	calcineurin B-like protein 1	Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.	calcineurin B-like protein 1;(source:Araport11)
AT4G16380.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G16015.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G16020.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.3e-221 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT4G16935.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 3.3e-16 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G17005.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.3e-14 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT4G15735.1	protein_coding	SCR-like 10	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 10;(source:Araport11)
AT4G16165.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT4G14385.3	protein_coding			histone acetyltransferase subunit NuA4-domain protein;(source:Araport11)
AT4G14385.2	protein_coding			histone acetyltransferase subunit NuA4-domain protein;(source:Araport11)
AT4G14950.3	protein_coding	SNARE associated Golgi protein family	KMS1 encode a endoplasmic reticulum protein  involved in the early secretory pathway.	SNARE associated Golgi protein family;(source:Araport11)
AT4G14950.2	protein_coding	SNARE associated Golgi protein family	KMS1 encode a endoplasmic reticulum protein  involved in the early secretory pathway.	SNARE associated Golgi protein family;(source:Araport11)
AT4G14713.2	protein_coding	TIFY domain/Divergent CCT motif family protein	PPD1 (and its paralog, PPD2) encode plant-specific putative DNA-binding proteins. PPD1 and PPD2 are not found in grasses. Overexpression of PPD reduces lamina size by promoting the early arrest of dispersed meristematic cells DMC proliferation during leaf and silique development. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth. The curvature of a deltappd leaf reflects the difference between excess growth of the lamina and a limitation to the extension capacity of its perimeter.	TIFY domain/Divergent CCT motif family protein;(source:Araport11)
AT4G14740.2	protein_coding	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region	FORKED-LIKE family member, part of Group 1 (FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT4G17020.2	protein_coding	transcription factor-related		transcription factor-like protein;(source:Araport11)
AT4G32560.2	protein_coding	paramyosin-related		paramyosin-like protein;(source:Araport11)
AT4G25690.2	protein_coding			stress response NST1-like protein;(source:Araport11)
AT4G26370.2	protein_coding	antitermination NusB domain-containing protein		antitermination NusB domain-containing protein;(source:Araport11)
AT4G35080.2	protein_coding	high-affinity nickel-transport family protein		high-affinity nickel-transport family protein;(source:Araport11)
AT4G25500.2	protein_coding	arginine/serine-rich splicing factor 35	Encodes an arginine/serine-rich splicing factor. The transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS40 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis (DOI:10.1093/nar/gkv751).	arginine/serine-rich splicing factor 35;(source:Araport11)
AT4G30710.2	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT4G22280.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G22340.2	protein_coding	cytidinediphosphate diacylglycerol synthase 2		cytidinediphosphate diacylglycerol synthase 2;(source:Araport11)
AT4G02725.1	protein_coding			spindle pole body-associated protein;(source:Araport11)
AT4G08290.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G08180.3	protein_coding	OSBP(oxysterol binding protein)-related protein 1C		OSBP(oxysterol binding protein)-related protein 1C;(source:Araport11)
AT4G22720.2	protein_coding	Actin-like ATPase superfamily protein		Actin-like ATPase superfamily protein;(source:Araport11)
AT4G28040.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G28088.1	protein_coding	Low temperature and salt responsive protein family		Low temperature and salt responsive protein family;(source:Araport11)
AT4G07583.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G07595.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G07586.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G02405.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G02314.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.7e-126 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G02312.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G02487.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.2e-30 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G02317.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.6e-25 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT4G08460.2	protein_coding	Protein of unknown function (DUF1644)		hypothetical protein (DUF1644);(source:Araport11)
AT4G09510.2	protein_coding	cytosolic invertase 2	CINV2 appears to function as a neutral invertase based on the phenotype of a  cinv1(AT1G35580)/cinv2 double mutant. It is predicted to be a cytosolic enzyme. CINV1, CINV2, and possibly other cytosolic invertases may play an important role in supplying carbon from sucrose to non-photosynthetic tissues.	cytosolic invertase 2;(source:Araport11)
AT4G09500.2	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G09565.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.8e-08 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT4G19710.2	protein_coding	aspartate kinase-homoserine dehydrogenase ii	Encodes a bifunctional aspartate kinase/homoserine dehydrogenase.  These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.	aspartate kinase-homoserine dehydrogenase ii;(source:Araport11)
AT4G32850.5	protein_coding	nuclear poly(a) polymerase	Encodes a nuclear poly(A) polymerase. Located in the nucleus. The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT4G32850.4	protein_coding	nuclear poly(a) polymerase	Encodes a nuclear poly(A) polymerase. Located in the nucleus. The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT4G32850.6	protein_coding	nuclear poly(a) polymerase	Encodes a nuclear poly(A) polymerase. Located in the nucleus. The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT4G08054.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.0e-70 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT4G19160.3	protein_coding			transglutaminase family protein;(source:Araport11)
AT4G19160.2	protein_coding			transglutaminase family protein;(source:Araport11)
AT4G19230.2	protein_coding	cytochrome P450, family 707, subfamily A, polypeptide 1	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy.	cytochrome P450, family 707, subfamily A, polypeptide 1;(source:Araport11)
AT4G19100.1	protein_coding	Protein of unknown function (DUF3464)		PAM68-like protein (DUF3464);(source:Araport11)
AT4G04320.2	protein_coding	malonyl-CoA decarboxylase family protein		malonyl-CoA decarboxylase family protein;(source:Araport11)
AT4G04375.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G04393.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.7e-43 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G04395.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G04405.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.6e-50 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G04408.1	pseudogene			pseudogene of histone H2A 4;(source:Araport11)
AT4G04296.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.4e-13 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G24160.2	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes a soluble lysophosphatidic acid acyltransferase with additional triacylglycerol lipase and phosphatidylcholine hydrolyzing enzymatic activities. Plays a pivotal role in maintaining the lipid homeostasis by regulating both phospholipid and neutral lipid levels.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G04692.2	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT4G04655.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.0e-19 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT4G04693.1	pseudogene			pseudogene of F-box family protein;(source:Araport11)
AT4G36050.2	protein_coding	endonuclease/exonuclease/phosphatase family protein	Encodes a base excision repair protein with 3'-phosphatase activity and strong 3'-5' exonuclease activity. Together with ZDP, it plays overlapping roles in the maintenance of epigenome and genome stability in plants.	endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT4G04925.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G05520.2	protein_coding	EPS15 homology domain 2	Encodes AtEHD2, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD1, At3g20290).	EPS15 homology domain 2;(source:Araport11)
AT4G05502.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.5e-53 P-value blast match to Q9ZQK9 /304-464 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G05583.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.9e-48 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G12735.1	protein_coding		Encodes a peroxisomal protein.	hypothetical protein;(source:Araport11)
AT4G24390.2	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G24190.2	protein_coding	Chaperone protein htpG family protein	encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat.  Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues.	Chaperone protein htpG family protein;(source:Araport11)
AT4G39270.2	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G39140.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G39140.4	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G07946.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.8e-24 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G07947.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G07917.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.0e-08 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT4G03912.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G03911.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G03923.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G03926.1	pseudogene			pseudogene of methylesterase PCR A;(source:Araport11)
AT4G03976.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G03977.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44860.1);(source:TAIR10)
AT4G03978.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G03979.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36035.1);(source:TAIR10)
AT4G03981.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.8e-62 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G03885.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-192 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G03876.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G26210.2	protein_coding	Mitochondrial ATP synthase subunit G protein		Mitochondrial ATP synthase subunit G protein;(source:Araport11)
AT4G11890.3	protein_coding	Protein kinase superfamily protein	Encodes a receptor-like cytosolic kinase ARCK1. Negatively controls abscisic acid and osmotic stress signal transduction.	Protein kinase superfamily protein;(source:Araport11)
AT4G04495.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.9e-24 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT4G04190.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G04293.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to P0703B11.15, blastp match of 38%25 identity and 2.2e-25 P-value to GP|18844826|dbj|BAB85296.1||AP003302 P0703B11.15 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT4G04157.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.4e-202 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT4G04167.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 3.0e-60 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT4G04175.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative reverse transcriptase, blastp match of 28%25 identity and 7.7e-08 P-value to GP|14018103|gb|AAK52166.1|AC084831_20|AC084831 putative reverse transcriptase {Oryza sativa};(source:TAIR10)
AT4G04255.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to unnamed protein product, blastp match of 37%25 identity and 5.0e-30 P-value to GP|6815097|dbj|BAA90383.1||AP001081 unnamed protein product {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT4G08390.2	protein_coding	stromal ascorbate peroxidase	Encodes a chloroplastic stromal ascorbate peroxidase sAPX.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. The mRNA is cell-to-cell mobile.	stromal ascorbate peroxidase;(source:Araport11)
AT4G08347.1	pseudogene			pseudogene of Ta11-like non-LTR retrotransposon;(source:Araport11)
AT4G27620.2	protein_coding			intracellular protein transporter;(source:Araport11)
AT4G27597.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 7.3e-86 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT4G02260.3	protein_coding	RELA/SPOT homolog 1	Displays guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity  but not  guanosine-3',5'-bis(diphosphate) 3'-diphosphate synthase activity.	RELA/SPOT homolog 1;(source:Araport11)
AT4G02235.1	protein_coding	AGAMOUS-like 51		AGAMOUS-like 51;(source:Araport11)
AT4G06699.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06697.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-34 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT4G06627.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.2e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G06629.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.6e-12 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G06635.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06633.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06631.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G06625.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.8e-63 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G09316.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.3e-116 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT4G09313.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.9e-148 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata);(source:TAIR10)
AT4G23882.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G23895.1	protein_coding	Pleckstrin homology (PH) domain-containing protein		Pleckstrin homology (PH) domain-containing protein;(source:Araport11)
AT4G24015.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G23930.2	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT4G23860.2	protein_coding	PHD finger protein-related		PHD finger protein-like protein;(source:Araport11)
AT4G08692.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G08652.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35030.1);(source:TAIR10)
AT4G08657.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G08598.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-24 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT4G08645.1	pseudogene			pseudogene of unknown protein;(source:Araport11)
AT4G08945.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.2e-16 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT4G08956.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G08953.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.4e-22 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT4G03000.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G34710.2	protein_coding	arginine decarboxylase 2	Encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.	arginine decarboxylase 2;(source:Araport11)
AT4G34460.3	protein_coding	GTP binding protein beta 1	Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER.  Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase.  It seems to be involved in the calcium-mediated response to extracellular ATP.	GTP binding protein beta 1;(source:Araport11)
AT4G11655.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G03770.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.8e-206 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10)
AT4G03795.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.2e-111 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G19420.2	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT4G03732.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G03726.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G03695.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT4G13455.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.0e-12 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans);(source:TAIR10)
AT4G07742.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.2e-55 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT4G07744.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.1e-79 P-value blast match to aT6L9 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT4G07747.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT4G01915.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G01915.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G01915.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G01985.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G01975.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to B, blastp match of 51%25 identity and 4.5e-98 P-value to GP|22830897|dbj|BAC15771.1||AB087616 B {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT4G03820.2	protein_coding	Protein of unknown function (DUF3537)		transmembrane protein, putative (DUF3537);(source:Araport11)
AT4G03824.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mariner-like transposase family, has a 1.5e-62 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max);(source:TAIR10)
AT4G03873.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 8.5e-06 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT4G03865.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G03837.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.0e-09 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT4G03825.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT4G21910.3	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT4G21910.2	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT4G18330.2	protein_coding	Translation elongation factor EF1A/initiation factor IF2gamma family protein		Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT4G13310.2	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 20	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 20;(source:Araport11)
AT4G13442.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT5G46630.2	protein_coding	Clathrin adaptor complexes medium subunit family protein	clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexes	Clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT5G46645.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 0.00040 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G10625.1	protein_coding			flowering-promoting factor-like protein;(source:Araport11)
AT5G10580.2	protein_coding	Protein of unknown function, DUF599		plant/protein (Protein of unknown function, DUF599);(source:Araport11)
AT5G03330.2	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT5G03440.2	protein_coding			zinc finger protein;(source:Araport11)
AT5G35926.1	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT5G35932.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT5G35923.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.6e-33 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G35918.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.6e-17 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G11950.2	protein_coding	Putative lysine decarboxylase family protein	Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.	Putative lysine decarboxylase family protein;(source:Araport11)
AT5G12040.2	protein_coding	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein		Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein;(source:Araport11)
AT5G11860.3	protein_coding	SCP1-like small phosphatase 5	Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).	SCP1-like small phosphatase 5;(source:Araport11)
AT5G12085.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.0e-197 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G15860.2	protein_coding	prenylcysteine methylesterase	Encodes a protein with prenylcysteine methylesterase activity.	prenylcysteine methylesterase;(source:Araport11)
AT5G15790.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G27902.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 5.3e-51 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G27882.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.5e-36 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G28067.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.4e-88 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT5G28030.2	protein_coding	L-cysteine desulfhydrase 1	Encodes a novel l-cysteine desulfhydrase involved in cysteine homeostasis that catalyzes the desulfuration of Cys, instead of the synthesis of Cys like the OASTL, to produce sulfide plus ammonia and pyruvate.	L-cysteine desulfhydrase 1;(source:Araport11)
AT5G32627.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 7.4e-28 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32623.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32625.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 9.5e-50 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G60230.2	protein_coding	splicing endonuclease 2	putative subunit of tRNA splicing endonuclease	splicing endonuclease 2;(source:Araport11)
AT5G06510.2	protein_coding	nuclear factor Y, subunit A10		nuclear factor Y, subunit A10;(source:Araport11)
AT5G06510.3	protein_coding	nuclear factor Y, subunit A10		nuclear factor Y, subunit A10;(source:Araport11)
AT5G11610.2	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT5G27037.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT5G27035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.6e-16 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT5G27043.1	pseudogene			pseudogene of cell division cycle 20.2;(source:Araport11)
AT5G38037.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28010.1);(source:TAIR10)
AT5G09690.3	protein_coding	magnesium transporter 7	Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT5G18940.2	protein_coding	Mo25 family protein		Mo25 family protein;(source:Araport11)
AT5G31989.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 6.7e-11 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G33405.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G33433.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-14 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G33441.1	pseudogene			pseudogene of cytochrome P450;(source:Araport11)
AT5G33436.1	pseudogene			pseudogene of Ribonuclease H-like superfamily protein;(source:Araport11)
AT5G33432.1	transposable_element_gene	transposable element gene	similar to En/Spm-like transposon 	transposable_element_gene;(source:Araport11);expressed protein;(source:TAIR10)
AT5G33400.1	pseudogene			pseudogene of Single-stranded nucleic acid binding R3H protein;(source:Araport11)
AT5G33404.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 4.5e-12 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT5G25770.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G25305.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 9.2e-51 P-value blast match to Tat4-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)T24H24-Lys reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT5G14420.3	protein_coding	RING domain ligase2	Encodes RGLG2 (RING domain ligase 2), a RING domain ubiquitin E3 ligase that negatively regulates the drought stress response by mediating ERF53 transcriptional activity.	RING domain ligase2;(source:Araport11)
AT5G14420.4	protein_coding	RING domain ligase2	Encodes RGLG2 (RING domain ligase 2), a RING domain ubiquitin E3 ligase that negatively regulates the drought stress response by mediating ERF53 transcriptional activity.	RING domain ligase2;(source:Araport11)
AT5G14430.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G14260.3	protein_coding	Rubisco methyltransferase family protein		Rubisco methyltransferase family protein;(source:Araport11)
AT5G32410.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07710.1);(source:TAIR10)
AT5G32434.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32430.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32420.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32431.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32400.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein;(source:TAIR10)
AT5G32405.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32169.1);(source:TAIR10)
AT5G30532.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G15995.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.2e-36 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G18410.2	protein_coding	transcription activators	distorted trichomes and exhibits a diffuse actin cytoskeleton	transcription activator;(source:Araport11)
AT5G18420.3	protein_coding			CCR4-NOT transcription complex subunit;(source:Araport11)
AT5G18475.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G18525.1	protein_coding	protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases	Encodes a BEACH domain containing protein that is involved in targeting storage proteins to the protein storage vacuoles and effector triggered immunity to Psuedomonas syringae.	protein serine/threonine kinase;(source:Araport11)
AT5G28350.2	protein_coding	Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor		Quinoprotein amine dehydrogenase, beta chain-like;(source:Araport11)
AT5G26740.2	protein_coding	Protein of unknown function (DUF300)		organic solute transporter ostalpha protein (DUF300);(source:Araport11)
AT5G26582.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.1e-42 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT5G26670.2	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT5G26600.2	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT5G04090.2	protein_coding	Plant protein 1589 of unknown function		histidine-tRNA ligase;(source:Araport11)
AT5G04220.2	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G04235.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.2e-38 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G25205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.0e-33 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT5G20920.2	protein_coding	eukaryotic translation initiation factor 2 beta subunit	protein synthesis initiation factor eIF2 beta	eukaryotic translation initiation factor 2 beta subunit;(source:Araport11)
AT5G21020.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G29629.1	pseudogene			pseudogene of UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G29436.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.4e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G29408.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 7.8e-116 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G29060.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G29041.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-43 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G29035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.9e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G29036.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G29058.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G29337.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.7e-77 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G36685.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.8e-11 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT5G28468.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.9e-46 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G28464.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 9.6e-23 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G28173.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.8e-63 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G28176.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28232.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.1e-85 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G19950.3	protein_coding	Domain of unknown function (DUF1767)		tudor domain protein (DUF1767);(source:Araport11)
AT5G20060.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G20045.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G26760.2	protein_coding		Encodes RPAP2 IYO Mate (RIMA), a homologue of yeast and human proteins linked to nuclear import of selective cargo. Knockdown of RIMA causes delayed onset of cell differentiation.	RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein;(source:Araport11)
AT5G26770.2	protein_coding		NEAP2 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.	myosin heavy chain, cardiac protein;(source:Araport11)
AT5G26775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.9e-28 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT5G26805.1	protein_coding			B3 domain protein;(source:Araport11)
AT5G26940.4	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Encodes a Mg2+-dependent DNA exonuclease that degrades organelle DNA during Arabidopsis pollen development.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G32569.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT5G32595.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.1e-97 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32576.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32572.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.4e-16 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G32521.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative;(source:TAIR10)
AT5G32522.1	pseudogene			pseudogene of nuclease HARBI1-like protein;(source:Araport11)
AT5G28913.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family	transposable_element_gene;(source:Araport11)
AT5G28916.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.7e-16 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10)
AT5G29031.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G29029.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Putative copia-type polyprotein, blastp match of 46%25 identity and 3.0e-30 P-value to GP|15209144|gb|AAK91877.1|AC091665_3|AC091665 Putative copia-type polyprotein {Oryza sativa};(source:TAIR10)
AT5G28996.1	pseudogene			pseudogene of phosphoenolpyruvate carboxykinase 1;(source:Araport11)
AT5G28993.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.2e-57 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G28937.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28929.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-47 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT5G28928.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28927.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 3.9e-45 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays);(source:TAIR10)
AT5G29033.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.5e-58 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G28667.1	pseudogene			pseudogene of nuclease;(source:Araport11)
AT5G28672.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28712.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28673.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.1e-40 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays);(source:TAIR10)
AT5G28671.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28664.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OSJNBa0029C04.8, blastp match of 44%25 identity and 1.9e-20 P-value to GP|21741659|emb|CAD39584.1||AL662943 OSJNBa0029C04.8 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT5G28655.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28641.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.3e-21 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G28637.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-23 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G28623.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44570.1);(source:TAIR10)
AT5G28625.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT5G28644.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mariner-like transposase family, has a 4.4e-101 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max);(source:TAIR10)
AT5G28662.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G16770.2	protein_coding	myb domain protein 9	Member of the R2R3 factor gene family.	myb domain protein 9;(source:Araport11)
AT5G16800.2	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT5G36825.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.2e-83 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G36775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.8e-11 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT5G24870.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G43910.3	protein_coding	pfkB-like carbohydrate kinase family protein		pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT5G43910.2	protein_coding	pfkB-like carbohydrate kinase family protein		pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT5G52547.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G01715.1	pseudogene			pseudogene of RNI-like superfamily protein;(source:Araport11)
AT5G01520.2	protein_coding	RING/U-box superfamily protein	Encodes a cytosolic RING-type E3 ubiquitin (Ub) ligase that is critical for ABA and high salinity responses during germination.  AtAIRP2 and SDIR1 likely play a combinatory role in ABA signaling and the response to high salt in Arabidopsis.	RING/U-box superfamily protein;(source:Araport11)
AT5G20580.2	protein_coding			TMEM192 family protein;(source:Araport11)
AT5G01240.2	protein_coding	like AUXIN RESISTANT 1	Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers.  Required for the establishment of embryonic root cell organization.	like AUXIN RESISTANT 1;(source:Araport11)
AT5G01260.2	protein_coding	Carbohydrate-binding-like fold		Carbohydrate-binding-like fold;(source:Araport11)
AT5G35046.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.3e-226 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G35048.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G35076.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.4e-45 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT5G35118.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.5e-10 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G35111.1	pseudogene			pseudogene of Peroxidase superfamily protein;(source:Araport11)
AT5G35073.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.3e-39 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G35070.2	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT5G35023.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 9.4e-88 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G35065.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.3e-33 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);(source:TAIR10)
AT5G35021.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G35061.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28865.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 7.1e-80 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G28888.1	transposable_element_gene	transposable element gene	pseudogene similar to terpenoid cyclase/protein prenyltransferase alpha-alpha toroid	transposable_element_gene;(source:Araport11);pseudogene, expressed protein;(source:TAIR10)
AT5G28886.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28894.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.8e-23 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT5G04045.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT5G08340.2	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT5G26283.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 5.7e-145 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G26233.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 6.2e-18 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G26286.1	pseudogene			pseudogene of TRAF-like family protein;(source:Araport11)
AT5G26345.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.9e-43 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G26236.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.5e-307 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G02740.2	protein_coding	Ribosomal protein S24e family protein		Ribosomal protein S24e family protein;(source:Araport11)
AT5G46490.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G61540.2	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein		N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT5G61670.2	protein_coding		Encodes a close homolog of the Cauliflower OR (Orange) protein that is located in the chloroplast of light grown organs but in the nucleus of etiolated cotyledons.  The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation.  Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons.  The AtOR protein interacts directly with the PSY (phytoene synthase) protein and acts as a positive posttranscriptional regulator of its expression, thereby affecting carotenoid biosynthesis.	orange protein;(source:Araport11)
AT5G61530.2	protein_coding	small G protein family protein / RhoGAP family protein		small G protein family protein / RhoGAP family protein;(source:Araport11)
AT5G39830.2	protein_coding	Trypsin family protein with PDZ domain	Encodes DEG8.  Forms a hexamer with DEG5 in the thylakoid lumen.  Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII).  Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II.	Trypsin family protein with PDZ domain-containing protein;(source:Araport11)
AT5G47080.2	protein_coding	casein kinase II  beta chain 1	Regulatory subunit beta of casein kinase II (CK2). purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)). One known substrate of CK2 is Phytochrome Interacting Factor 1 (PIF1). CK2-mediated phosphorylation enhances the light-induced degradation of PIF1 to promote photomorphogenesis.	casein kinase II beta chain 1;(source:Araport11)
AT5G44565.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G38970.3	protein_coding	brassinosteroid-6-oxidase 1	Encodes a polypeptide involved in the C-6 oxidation of brassinosteroids. Heterologous expression of the protein in yeast conferred the ability to catalyze multiple reactions in which the C-6 position of 6-deoxocastasterone, 6-deoxotyphasterol, 3-dehydro-6-deoxoteasterone and 6-deoxoteasterone are oxidized.	brassinosteroid-6-oxidase 1;(source:Araport11)
AT5G38975.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.0e-15 P-value blast match to GB:CAA30503 pol polypeptide (Ty1_Copia-element) (Drosophila melanogaster);(source:TAIR10)
AT5G48655.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G48657.2	protein_coding	defense protein-related		defense protein-like protein;(source:Araport11)
AT5G48657.1	protein_coding	defense protein-related		defense protein-like protein;(source:Araport11)
AT5G41835.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.2e-43 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT5G51620.2	protein_coding	Uncharacterised protein family (UPF0172)		Uncharacterized protein family (UPF0172);(source:Araport11)
AT5G45082.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 4.1e-38 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G59050.2	protein_coding			G patch domain protein;(source:Araport11)
AT5G54203.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-192 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT5G54206.1	pseudogene			pseudogene of 12-oxophytodienoate reductase 2;(source:Araport11)
AT5G05360.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G05930.2	protein_coding	guanylyl cyclase 1		guanylyl cyclase 1;(source:Araport11)
AT5G37872.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.4e-54 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G24580.2	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G62520.2	protein_coding	similar to RCD one 5	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.	similar to RCD one 5;(source:Araport11)
AT5G62575.2	protein_coding		Encodes subunit 7 of mitochondrial complex II (succinate dehydrogenase complex) and participates in the respiratory chain. It contributes to anchoring succinate dehydrogenase to the inner mitochondrial membrane. The mRNA is cell-to-cell mobile.	succinate dehydrogenase subunit;(source:Araport11)
AT5G49020.2	protein_coding	protein arginine methyltransferase 4A	Encodes a type I protein arginine methyltransferase. PRMT4a can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.	protein arginine methyltransferase 4A;(source:Araport11)
AT5G48950.2	protein_coding	Thioesterase superfamily protein	Encodes one of the two functional DHNA-CoA (1,4-dihydroxy-2-naphthoyl-CoA) thioesterases found in Arabidopsis.	Thioesterase superfamily protein;(source:Araport11)
AT5G49015.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT5G58970.2	protein_coding	uncoupling protein 2	UCP2 and its paralog UCP1 is a member of the PUMP2 family of uncoupling proteins. It functions as a mitochondrial transporter of spartate, glutamate and dicarboxylates.	uncoupling protein 2;(source:Araport11)
AT5G53850.3	protein_coding	haloacid dehalogenase-like hydrolase family protein	Encodes a trifunctional dehydratase / enolase / phosphatase involved in the methionine salvage.	haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT5G53850.2	protein_coding	haloacid dehalogenase-like hydrolase family protein	Encodes a trifunctional dehydratase / enolase / phosphatase involved in the methionine salvage.	haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT5G66360.2	protein_coding	Ribosomal RNA adenine dimethylase family protein	Encodes a mitochondrial rRNA dimethylase.	Ribosomal RNA adenine dimethylase family protein;(source:Araport11)
AT5G66320.2	protein_coding	GATA transcription factor 5	Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of  development and is inducible by nitrate.	GATA transcription factor 5;(source:Araport11)
AT5G44875.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G67245.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G67170.2	protein_coding	SEC-C motif-containing protein / OTU-like cysteine protease family protein		SEC-C motif-containing protein / OTU-like cysteine protease family protein;(source:Araport11)
AT5G61910.2	protein_coding	DCD (Development and Cell Death) domain protein		DCD (Development and Cell Death) domain protein;(source:Araport11)
AT5G61910.3	protein_coding	DCD (Development and Cell Death) domain protein		DCD (Development and Cell Death) domain protein;(source:Araport11)
AT5G61900.3	protein_coding	Calcium-dependent phospholipid-binding Copine family protein	Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response.	Calcium-dependent phospholipid-binding Copine family protein;(source:Araport11)
AT5G48335.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G44730.2	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G44785.2	protein_coding	organellar single-stranded DNA binding protein 3	Organellar Single-stranded DNA Binding protein. Decreases MMEJ on long ssDNA templates.	organellar single-stranded DNA binding protein 3;(source:Araport11)
AT5G44720.2	protein_coding	Molybdenum cofactor sulfurase family protein		Molybdenum cofactor sulfurase family protein;(source:Araport11)
AT5G56250.2	protein_coding	hapless 8		hapless 8;(source:Araport11)
AT5G43185.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT5G52410.2	protein_coding			oxidoreductase/transition metal ion-binding protein;(source:Araport11)
AT5G52415.1	pseudogene			pseudogene of TRAF-like family protein;(source:Araport11)
AT5G66160.2	protein_coding	receptor homology region transmembrane domain ring H2 motif protein 1	Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Localized to endoplasmic reticulum and co-localizes with DIP positive vesicles and to the trans-golgi network when complexed with RMR2.	receptor homology region transmembrane domain ring H2 motif protein 1;(source:Araport11)
AT5G66055.2	protein_coding	ankyrin repeat protein	A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	ankyrin repeat protein;(source:Araport11)
AT5G66050.2	protein_coding	Wound-responsive family protein		Wound-responsive family protein;(source:Araport11)
AT5G66005.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT5G66005.2	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT5G49746.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.0e-20 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT5G49743.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G49710.2	protein_coding			RING finger protein;(source:Araport11)
AT5G49710.3	protein_coding			RING finger protein;(source:Araport11)
AT5G35575.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.5e-41 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G45620.2	protein_coding	Proteasome component (PCI) domain protein		Proteasome component (PCI) domain protein;(source:Araport11)
AT5G39245.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.0e-51 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT5G17450.2	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G42235.1	protein_coding	Expressed protein	Encodes a defensin-like (DEFL) family protein.	Expressed protein;(source:Araport11)
AT5G50840.2	protein_coding			alpha-taxilin-like protein;(source:Araport11)
AT5G49465.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.0e-21 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT5G49470.2	protein_coding	PAS domain-containing protein tyrosine kinase family protein	Encodes a protein with similarity to RAF MAP Kinase that is expressed in most plant tissues. Based on loss of function and gain of function phenotypes, RAF10 appears to be involved in ABA response.	PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT5G45275.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G45370.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G45370.3	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G67540.2	protein_coding	Arabinanase/levansucrase/invertase		Arabinanase/levansucrase/invertase;(source:Araport11)
AT5G67480.2	protein_coding	BTB and TAZ domain protein 4	BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.	BTB and TAZ domain protein 4;(source:Araport11)
AT5G44255.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.5e-09 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica);(source:TAIR10)
AT5G49970.2	protein_coding	pyridoxin (pyrodoxamine) 5'-phosphate oxidase	encodes the bifunctional pyridoxine (pyridoxamine) 5?-phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group). NAD(P)HX epimerase (AT5G49970) interconverts the two epimers of NAD(P)HX.	pyridoxin (pyrodoxamine) 5-phosphate oxidase;(source:Araport11)
AT5G36075.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 3.2e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G36185.1	pseudogene			pseudogene of serine carboxypeptidase-like 1;(source:Araport11)
AT5G61770.3	protein_coding	PETER PAN-like protein	A single-copy gene  encoding a 346 aa protein with a single Brix domain. Similar to yeast ribosome biogenesis proteins Ssf1/2.	PETER PAN-like protein;(source:Araport11)
AT5G60870.2	protein_coding	Regulator of chromosome condensation (RCC1) family protein	Encodes a mitochondrial protein RUG3 that is required for accumulation of mitochondrial respiratory chain complex I. RUG3 is related to human REGULATOR OF CHROMOSOME CONDENSATION 1 (RCC1) and Arabidopsis UV-B RESISTANCE 8 (UVR8).	Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT5G10745.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G38590.2	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G42850.2	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT5G43015.1	transposable_element_gene	transposable element gene	Mutator-like transposase family, has a 2.3e-39 P-value blast match to GB:AAA21566 mudrA of transposon= MuDR  (MuDr-element) (Zea mays)	transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.3e-39 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G42920.2	protein_coding	THO complex,  subunit 5	Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	THO complex, subunit 5;(source:Araport11)
AT5G42825.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G54840.2	protein_coding	Ras-related small GTP-binding family protein	Monomeric G protein. Expressed in the root quiescent center, flowers, and leaf guard cells and hydathodes.	Ras-related small GTP-binding family protein;(source:Araport11)
AT5G07685.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.0e-118 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT5G41680.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G41610.2	protein_coding	cation/H+ exchanger 18	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 18;(source:Araport11)
AT5G63760.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G06230.2	protein_coding	TRICHOME BIREFRINGENCE-LIKE 9	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 9;(source:Araport11)
AT5G06180.2	protein_coding	Protein of unknown function (DUF1022)		fission ELM1-like protein (DUF1022);(source:Araport11)
AT5G63990.2	protein_coding	Inositol monophosphatase family protein		Inositol monophosphatase family protein;(source:Araport11)
AT5G47830.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G47815.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.0e-38 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G47720.3	protein_coding	Thiolase family protein	Encodes a functional acetoacetyl-CoA thiolase that is functionally redundant with AACT2.  Loss-of-function mutants show no apparent growth phenotypes.	Thiolase family protein;(source:Araport11)
AT5G47720.4	protein_coding	Thiolase family protein	Encodes a functional acetoacetyl-CoA thiolase that is functionally redundant with AACT2.  Loss-of-function mutants show no apparent growth phenotypes.	Thiolase family protein;(source:Araport11)
AT5G56370.2	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G56420.2	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G58190.2	protein_coding	evolutionarily conserved C-terminal region 10		evolutionarily conserved C-terminal region 10;(source:Araport11)
AT5G58330.3	protein_coding	lactate/malate dehydrogenase family protein		lactate/malate dehydrogenase family protein;(source:Araport11)
AT5G58370.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G58210.3	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G58210.2	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G58240.2	protein_coding	FRAGILE HISTIDINE TRIAD	Encodes a Fhit protein. Has nucleoside phosphoramidase and adenylylsulfatase activities.	FRAGILE HISTIDINE TRIAD;(source:Araport11)
AT5G46195.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 8.8e-38 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G56180.2	protein_coding	actin-related protein 8	encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.	actin-related protein 8;(source:Araport11)
AT5G63120.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G55610.2	protein_coding			isopentenyl-diphosphate delta-isomerase;(source:Araport11)
AT5G55565.1	protein_coding		Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT5G42505.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.1e-23 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element);(source:TAIR10)
AT5G41080.2	protein_coding	PLC-like phosphodiesterases superfamily protein	Encodes a member of the glycerophosphodiester phosphodiesterase (GDPD) family.	PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT5G44417.1	pseudogene			pseudogene of FAD-binding Berberine family protein;(source:Araport11)
AT5G44418.1	pseudogene			pseudogene of cytochrome P450;(source:Araport11)
AT5G44416.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.6e-75 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G51460.3	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G42645.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.6e-234 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G53815.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 6.6e-26 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G53775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.4e-39 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10)
AT5G06280.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G64080.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G57060.2	protein_coding			60S ribosomal L18a-like protein;(source:Araport11)
AT5G56900.2	protein_coding	CwfJ-like family protein / zinc finger (CCCH-type) family protein		CwfJ-like family protein / zinc finger (CCCH-type) family protein;(source:Araport11)
AT5G48150.2	protein_coding	GRAS family transcription factor	Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.	GRAS family transcription factor;(source:Araport11)
AT5G48205.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT5G39533.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.1e-41 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G56605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 5.8e-10 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster);(source:TAIR10)
AT5G56850.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G35802.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.6e-27 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G51870.2	protein_coding	AGAMOUS-like 71	Encodes a MADS-box transcription factor involved in floral transition.	AGAMOUS-like 71;(source:Araport11)
AT5G42820.2	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein	U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35.    U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G57340.2	protein_coding			ras guanine nucleotide exchange factor Q-like protein;(source:Araport11)
AT5G57270.2	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G57270.3	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G42100.2	protein_coding	beta-1,3-glucanase_putative	encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd	beta-1,3-glucanase;(source:Araport11)
AT5G35615.1	pseudogene			pseudogene of Ribonuclease H-like superfamily protein;(source:Araport11)
AT5G35643.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G35646.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14774.1);(source:TAIR10)
AT5G35657.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.1e-79 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G35620.2	protein_coding	Eukaryotic initiation factor 4E protein	Cap-binding protein, binds to the 5' cap structure of nuclear-encoded mRNAs.  Mutant is resistant to potyvirus infection.	Eukaryotic initiation factor 4E protein;(source:Araport11)
AT5G48545.1	protein_coding	histidine triad nucleotide-binding 3	Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.	histidine triad nucleotide-binding 3;(source:Araport11)
AT5G48440.2	protein_coding	FAD-dependent oxidoreductase family protein		FAD-dependent oxidoreductase family protein;(source:Araport11)
AT5G63040.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G05740.2	protein_coding	ethylene-dependent gravitropism-deficient and yellow-green-like 2	S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442–454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171–179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.	ethylene-dependent gravitropism-deficient and yellow-green-like 2;(source:Araport11)
AT5G05670.2	protein_coding	signal recognition particle binding		signal recognition particle binding protein;(source:Araport11)
AT5G23260.2	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat.  Also shown to be necessary for determining the identity of the endothelial layer within the ovule.  Paralogous to GOA. Plays a maternal role in fertilization and seed development.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G23235.1	pseudogene			pseudogene of DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G17210.2	protein_coding	Protein of unknown function (DUF1218)		transmembrane protein, putative (DUF1218);(source:Araport11)
AT5G63460.2	protein_coding	SAP domain-containing protein	Enhances ABA response and plant drought tolerance by modulating the stability and localization of c2-domain ABA-related proteins.LOT1 regulates plant tolerance to drought stress by affecting ABA signaling through regulating the stability and dynamic localization of CAR9 (PMID:31102784).	SAP domain-containing protein;(source:Araport11)
AT5G24105.1	protein_coding	arabinogalactan protein 41	Encodes a putative arabinogalactan-protein (AGP41).	arabinogalactan protein 41;(source:Araport11)
AT5G36937.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.2e-09 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G43035.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.0e-16 P-value blast match to GB:CAA36616 ORF4 (Ty1_Copia-element) (Solanum tuberosum);(source:TAIR10)
AT5G59830.2	protein_coding			DNA-binding protein;(source:Araport11)
AT5G59950.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G53050.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G53030.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G40530.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G40605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.7e-45 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G49650.2	protein_coding	xylulose kinase-2	Encodes a cytosolic protein capable of phosphorylating xylulose and deoxy-xylulose. It most likely plays a role in producing precursors for isoprenoid biosynthesis.	xylulose kinase-2;(source:Araport11)
AT5G47455.5	protein_coding			hypothetical protein;(source:Araport11)
AT5G47455.6	protein_coding			hypothetical protein;(source:Araport11)
AT5G47620.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G37340.2	protein_coding	ZPR1 zinc-finger domain protein		ZPR1 zinc-finger domain protein;(source:Araport11)
AT5G37383.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 9.0e-76 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G37381.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.5e-121 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT5G43270.3	protein_coding	squamosa promoter binding protein-like 2	member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors.    In conjunction with SPL10 and SPL11, SPL2 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.	squamosa promoter binding protein-like 2;(source:Araport11)
AT5G06950.2	protein_coding	bZIP transcription factor family protein	Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment.	bZIP transcription factor family protein;(source:Araport11)
AT5G07100.2	protein_coding	WRKY DNA-binding protein 26	Encodes WRKY DNA-binding protein 26 (WRKY26).	WRKY DNA-binding protein 26;(source:Araport11)
AT5G06960.2	protein_coding	OCS-element binding factor 5	Encodes a basic leucine zipper (B-ZIP) containing protein that interacts with NPR1 to promote expression of salicylic acid induced genes. Binds the ocs-element.	OCS-element binding factor 5;(source:Araport11)
AT5G35495.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 5.8e-27 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G35535.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.2e-31 P-value blast match to GB:NP_038604 L1 repeat, Tf subfamily, member 26 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G35555.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 8.1e-177 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G05590.2	protein_coding	phosphoribosylanthranilate isomerase 2	Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in the tryptophan biosynthetic pathway.	phosphoribosylanthranilate isomerase 2;(source:Araport11)
AT5G24310.2	protein_coding	ABL interactor-like protein 3	One of four ABI-like proteins. Involved in trichome morphogenesis, root elongation. Associates with microtubules.	ABL interactor-like protein 3;(source:Araport11)
AT5G37476.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.7e-18 P-value blast match to GB:CAA37925 orf 3 (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G37478.1	protein_coding	TPX2 (targeting protein for Xklp2) protein family		TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT5G50130.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G50090.2	protein_coding			D-ribose-binding periplasmic protein;(source:Araport11)
AT5G06710.2	protein_coding	homeobox from Arabidopsis thaliana	Homeobox-leucine zipper protein.	homeobox leucine zipper protein;(source:Araport11)
AT5G46390.2	protein_coding	Peptidase S41 family protein		Peptidase S41 family protein;(source:Araport11)
AT5G62720.2	protein_coding	Integral membrane HPP family protein		Integral membrane HPP family protein;(source:Araport11)
AT5G22550.2	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT5G58540.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G16300.2	protein_coding	Vps51/Vps67 family (components of vesicular transport) protein		Vps51/Vps67 family (components of vesicular transport) protein;(source:Araport11)
AT5G16390.2	protein_coding	chloroplastic acetylcoenzyme A carboxylase 1	Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex.	chloroplastic acetylcoenzyme A carboxylase 1;(source:Araport11)
AT5G16540.3	protein_coding	zinc finger nuclease 3	Encodes a zinc finger protein.	zinc finger nuclease 3;(source:Araport11)
AT5G23750.2	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT5G65180.2	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT5G45760.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G45660.1	protein_coding			adenine phosphoribosyltransferase;(source:Araport11)
AT5G45710.2	protein_coding	winged-helix DNA-binding transcription factor family protein	member of Heat Stress Transcription Factor (Hsf) family	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT5G18270.2	protein_coding	Arabidopsis NAC domain containing protein 87		NAC domain containing protein 87;(source:Araport11)
AT5G18240.4	protein_coding	myb-related protein 1	Encodes MYR1 (MYR1).	myb-related protein 1;(source:Araport11)
AT5G18240.3	protein_coding	myb-related protein 1	Encodes MYR1 (MYR1).	myb-related protein 1;(source:Araport11)
AT5G18240.5	protein_coding	myb-related protein 1	Encodes MYR1 (MYR1).	myb-related protein 1;(source:Araport11)
AT5G18130.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G43960.2	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT5G44005.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G43990.2	protein_coding	SET-domain containing protein lysine methyltransferase family protein	Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT5G23840.2	protein_coding	MD-2-related lipid recognition domain-containing protein		MD-2-related lipid recognition domain-containing protein;(source:Araport11)
AT5G23870.3	protein_coding	Pectinacetylesterase family protein	Encodes a pectin acetylesterase that removes cell wall acetate associated with pectin formation in Arabidopsis leaves.	Pectinacetylesterase family protein;(source:Araport11)
AT5G23870.2	protein_coding	Pectinacetylesterase family protein	Encodes a pectin acetylesterase that removes cell wall acetate associated with pectin formation in Arabidopsis leaves.	Pectinacetylesterase family protein;(source:Araport11)
AT5G23955.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.6e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G52055.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.7e-30 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G52030.2	protein_coding	TraB family protein		TraB family protein;(source:Araport11)
AT5G51970.2	protein_coding	GroES-like zinc-binding alcohol dehydrogenase family protein	Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro.	GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT5G38285.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.1e-22 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G38290.2	protein_coding	Peptidyl-tRNA hydrolase family protein		Peptidyl-tRNA hydrolase family protein;(source:Araport11)
AT5G64390.2	protein_coding	RNA-binding KH domain-containing protein	encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl. The mRNA is cell-to-cell mobile.	RNA-binding KH domain-containing protein;(source:Araport11)
AT5G60940.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	Member of CstF complex.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G66720.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT5G55550.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G55530.2	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G55530.3	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G62000.3	protein_coding	auxin response factor 2	Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation. The mRNA is cell-to-cell mobile.	auxin response factor 2;(source:Araport11)
AT5G16610.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G57940.3	protein_coding	cyclic nucleotide gated channel 5	Encodes a cyclic GMP activated Ca2+-permeable cation channel in the plasma membrane of guard cells.	cyclic nucleotide gated channel 5;(source:Araport11)
AT5G57565.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G64710.2	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT5G64685.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.6e-85 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G64630.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems.  In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively.  Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G64630.3	protein_coding	Transducin/WD40 repeat-like superfamily protein	Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems.  In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively.  Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G60400.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G60400.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G60410.2	protein_coding	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain	Encodes  a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis.  Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation.  signaling	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein;(source:Araport11)
AT5G60590.2	protein_coding	DHBP synthase RibB-like alpha/beta domain		DHBP synthase RibB-like alpha/beta domain-containing protein;(source:Araport11)
AT5G05000.3	protein_coding	translocon at the outer envelope membrane of chloroplasts 34	Outer membrane GTPase protein that may function in import of nuclear encoded proteins into the chloroplast. Phosphorylation of the G-domains regulate translocon assembly.	translocon at the outer envelope membrane of chloroplasts 34;(source:Araport11)
AT5G57150.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G57150.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G43500.2	protein_coding	actin-related protein 9	encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.	actin-related protein 9;(source:Araport11)
AT5G35777.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.0e-67 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G38220.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G38275.1	pseudogene			pseudogene of PR5-like receptor kinase;(source:Araport11)
AT5G12210.2	protein_coding	RAB geranylgeranyl transferase beta subunit 1		RAB geranylgeranyl transferase beta subunit 1;(source:Araport11)
AT5G35738.1	pseudogene			pseudogene of zinc-dependent activator protein-1;(source:Araport11)
AT5G35737.1	protein_coding		Ta11-like non-LTR retrotransposon;(source:Araport11). Maternally expressed, imprinted gene.	Ta11-like non-LTR retrotransposon;(source:Araport11)
AT5G35736.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G35732.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G64816.2	protein_coding		Thionin-like gene.	thionin-like protein;(source:Araport11)
AT5G65000.2	protein_coding	Nucleotide-sugar transporter family protein	Encodes an ER-localized facilitator of UDP-N-acetylglucosamine (UDP-GlcNAc) and UDP-N-acetylgalactosamine (UDP-GalNAc) transport.  It also regulates the cytokinin signal in meristematic cells through modulating activity of cytokinin oxidases/dehydrogenases. Finally, it is an important part of the ER quality control system, which determines the fate of aberrant proteins in the secretory pathway.	Nucleotide-sugar transporter family protein;(source:Araport11)
AT5G39863.1	pseudogene			pseudogene of receptor kinase 3;(source:Araport11)
AT5G39861.1	pseudogene			pseudogene of receptor kinase 3;(source:Araport11)
AT5G39995.1	pseudogene			pseudogene of myb domain protein 110;(source:Araport11)
AT5G39862.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 4.3e-43 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G39955.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 4.7e-26 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G09995.3	protein_coding			transmembrane protein;(source:Araport11)
AT5G09995.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G09900.2	protein_coding	26S proteasome regulatory subunit, putative (RPN5)	Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects.	26S proteasome regulatory subunit, putative (RPN5);(source:Araport11)
AT5G46665.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT5G58600.2	protein_coding	Plant protein of unknown function (DUF828)	Belongs to a large family of plant-specific genes of unknown function.  Involved in resistance to the powdery mildew species Erysiphe cichoracearum and Erysiphe orontii, but not to the unrelated pathogens Pseudomonas syringae or Peronospora parasitica.  A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein (DUF828);(source:Araport11)
AT5G28605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 2.3e-44 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT5G28580.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 7.3e-33 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G01335.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.4e-29 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus);(source:TAIR10)
AT5G25520.2	protein_coding	SPOC domain / Transcription elongation factor S-II protein		SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT5G25570.2	protein_coding			polyamine-modulated factor 1-binding protein;(source:Araport11)
AT5G32471.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT5G32485.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 0.00082 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi);(source:TAIR10)
AT5G32519.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-23 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G32487.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 2.4e-71 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT5G32517.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32515.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32510.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32489.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32483.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G32473.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G19030.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G19030.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G18630.3	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G18636.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT5G18633.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.8e-39 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G04620.2	protein_coding	biotin F	The cDNA encoding 7-keto-8-aminopelargonic acid (KAPA) synthase, the first committed enzyme of the biotin synthesis pathway has been cloned and its molecular function confirmed (functional complementation of an E. coli mutant). The subcellular localization of the enzyme (cytosol) proves that the biotin biosynthesis in plants takes place in different compartments which differs from the biosynthetic route found in microorganisms.	biotin F;(source:Araport11)
AT5G27705.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.2e-58 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT5G25955.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.7e-17 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G15410.2	protein_coding	Cyclic nucleotide-regulated ion channel family protein	'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile.  Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens. CNGC2 could be the key step mediating bulk Ca2+ influx into leaf cells after unloading from the vascular and have no direct roles in the leaf development and HR.	Cyclic nucleotide-regulated ion channel family protein;(source:Araport11)
AT5G15550.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G27095.1	pseudogene			pseudogene of F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G16150.3	protein_coding	plastidic GLC translocator	Encodes a putative plastidic glucose transporter.	plastidic GLC translocator;(source:Araport11)
AT5G08100.2	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	Encodes an asparaginase that catalyzes the degradation of L-asparagine to L-aspartic acid and ammonia.	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT5G08185.1	miRNA_primary_transcript	microRNA162A	Encodes a microRNA that targets DCL1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGAUAAACCUCUGCAUCCAG	microRNA162A;(source:Araport11)
AT5G02580.2	protein_coding	Plant protein 1589 of unknown function		argininosuccinate lyase;(source:Araport11)
AT5G02600.2	protein_coding	Heavy metal transport/detoxification superfamily protein 	Encodes a phloem mobile metal binding protein necessary for phloem function and root meristem maintenance.	Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G28073.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein;(source:TAIR10)
AT5G28143.1	pseudogene			pseudogene of topoisomerase II;(source:Araport11)
AT5G28141.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 5.0e-54 P-value blast match to GB:CAA38906 Tam3-transposase (hAT-element) (Antirrhinum majus);(source:TAIR10)
AT5G28076.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G19150.2	protein_coding	pfkB-like carbohydrate kinase family protein	AT5G19150 is a dehydratase that converts (S)-NAD(P)HX to NAD(P)H.	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT5G19165.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 1.1e-237 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT5G19130.2	protein_coding	GPI transamidase component family protein / Gaa1-like family protein		GPI transamidase component family protein / Gaa1-like family protein;(source:Araport11)
AT5G19210.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G12840.3	protein_coding	nuclear factor Y, subunit A1	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	nuclear factor Y, subunit A1;(source:Araport11)
AT5G12840.4	protein_coding	nuclear factor Y, subunit A1	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	nuclear factor Y, subunit A1;(source:Araport11)
AT5G35142.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-102 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G35146.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G35148.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.5e-89 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G37442.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 5.7e-44 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G35310.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.0e-24 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT5G35354.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.6e-18 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G35337.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G35341.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G35339.1	pseudogene			pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT5G35330.2	protein_coding	methyl-CPG-binding domain protein 02	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain protein 02;(source:Araport11)
AT5G35344.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G35348.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G35338.2	protein_coding	methyl-CPG-binding domain 12	Protein containing a putative methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain 12;(source:Araport11)
AT5G28525.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT5G28515.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G28524.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp1/En/Spm), has a 8.8e-34 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element);(source:TAIR10)
AT5G28497.1	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT5G28527.1	pseudogene			pseudogene of F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G29577.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.9e-17 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G29562.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.8e-228 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);(source:TAIR10)
AT5G29565.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.5e-98 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family);(source:TAIR10)
AT5G29568.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-19 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT5G29571.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.2e-285 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G29574.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Tnp2/En/Spm), has a 2.5e-131 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus);(source:TAIR10)
AT5G07215.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 6.9e-34 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G07225.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G07370.4	protein_coding	inositol polyphosphate kinase 2 alpha	Encodes inositol polyphosphate kinase, which phosphorylates inositol 1,4,5-triphosphate and inositol 1,3,4,5-tetrakisphosphate to generate inositol 1,3,4,5,6-pentakisphosphate. Acts redundantly with ATIPK2beta during pollen   development, pollen tube guidance and embryogenesis. The mRNA is cell-to-cell mobile.	inositol polyphosphate kinase 2 alpha;(source:Araport11)
AT5G09240.3	protein_coding	ssDNA-binding transcriptional regulator		ssDNA-binding transcriptional regulator;(source:Araport11)
AT5G09230.5	protein_coding	sirtuin 2	Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).	sirtuin 2;(source:Araport11)
AT5G09230.6	protein_coding	sirtuin 2	Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).	sirtuin 2;(source:Araport11)
AT5G09225.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G12330.2	protein_coding	Lateral root primordium (LRP) protein-related	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin.  SWP1 is involved in the repression of LRP1 via histone deacetylation.	Lateral root primordium (LRP) protein-like protein;(source:Araport11)
AT5G12330.3	protein_coding	Lateral root primordium (LRP) protein-related	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin.  SWP1 is involved in the repression of LRP1 via histone deacetylation.	Lateral root primordium (LRP) protein-like protein;(source:Araport11)
AT5G36293.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 1.2e-12 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G36223.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G36296.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 2.6e-14 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G36226.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 7.7e-38 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus);(source:TAIR10)
AT5G13220.2	protein_coding	jasmonate-zim-domain protein 10	Encodes JAZ10, a member of the JASMONATE ZIM-domain (JAZ) proteins acting as repressors of jasmonate (JA) signaling. An alternatively spliced form (JAZ10.4) of JAZ10 lacks the Jas domain.	jasmonate-zim-domain protein 10;(source:Araport11)
AT5G13220.3	protein_coding	jasmonate-zim-domain protein 10	Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa, whereas RNAi constructs for At5g13220.3 increased MeJA sensitivity. This isoform modifies growth in response to wounding in a process that requires jasmonate signaling.	jasmonate-zim-domain protein 10;(source:Araport11)
AT5G10070.2	protein_coding	RNase L inhibitor protein-related		RNase L inhibitor protein-like protein;(source:Araport11)
AT5G04510.2	protein_coding	3'-phosphoinositide-dependent protein kinase 1	Encodes 3-phosphoinositide-dependent protein kinase that contains pleckstrin homology domain and binds 3-phosphoinositides.  It activates the protein kinase AGC2-1 in a phosphatidic acid dependent manner. Phosphorylates S6K1. Interacts with PID, and   transphosphorylation by PDK1 increases PID autophosphorylation. The mRNA is cell-to-cell mobile.	3-phosphoinositide-dependent protein kinase 1;(source:Araport11)
AT5G34696.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.6e-71 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G30247.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 2.3e-45 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G30428.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.9e-06 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G30628.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G29890.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 5.2e-21 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family);(source:TAIR10)
AT5G29762.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G30123.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT5G30218.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 3.3e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G24775.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.6e-99 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT5G24760.2	protein_coding	GroES-like zinc-binding dehydrogenase family protein		GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G09300.2	protein_coding	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein		Thiamin diphosphate-binding fold (THDP-binding) superfamily protein;(source:Araport11)
AT5G11010.3	protein_coding	Pre-mRNA cleavage complex II protein family		Pre-mRNA cleavage complex II protein family;(source:Araport11)
AT5G22210.2	protein_coding			aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B;(source:Araport11)
AT5G22140.2	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT5G13500.3	protein_coding			Hyp O-arabinosyltransferase-like protein;(source:Araport11)
AT5G28287.1	pseudogene			pseudogene of methylesterase PCR A;(source:Araport11)
AT5G28237.1	protein_coding	Pyridoxal-5'-phosphate-dependent enzyme family protein		Pyridoxal-5-phosphate-dependent enzyme family protein;(source:Araport11)
AT5G34985.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.8e-266 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT5G14740.2	protein_coding	carbonic anhydrase 2	Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm.  Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.	carbonic anhydrase 2;(source:Araport11)
AT1G75670.2	protein_coding	DNA-directed RNA polymerases		DNA-directed RNA polymerase;(source:Araport11)
AT1G14820.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G14820.3	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G14770.2	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G14685.3	protein_coding	basic pentacysteine 2	Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.	basic pentacysteine 2;(source:Araport11)
AT1G33470.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G69420.2	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT1G69400.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G69510.3	protein_coding	cAMP-regulated phosphoprotein 19-related protein		cAMP-regulated phosphoprotein 19-related protein;(source:Araport11)
AT1G03103.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G03106.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G03055.2	protein_coding		Encodes the ortholog of rice D27.  It is plastid-localized and is required for the inhibition of secondary bud outgrowth and operates on a nonmobile precursor upstream of MAX1 in the SL biosynthesis pathway.	beta-carotene isomerase D27-like protein;(source:Araport11)
AT1G48325.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT1G17590.2	protein_coding	nuclear factor Y, subunit A8		nuclear factor Y, subunit A8;(source:Araport11)
AT1G17590.3	protein_coding	nuclear factor Y, subunit A8		nuclear factor Y, subunit A8;(source:Araport11)
AT1G51370.2	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G51340.2	protein_coding	MATE efflux family protein	Encodes a root citrate transporter which together with the root malate transporter ALMT1 are the primary mechanism of aluminum tolerance.	MATE efflux family protein;(source:Araport11)
AT1G51172.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G61240.2	protein_coding	Protein of unknown function (DUF707)		lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT1G61150.2	protein_coding	LisH and RanBPM domains containing protein		LisH and RanBPM domains containing protein;(source:Araport11)
AT1G61150.3	protein_coding	LisH and RanBPM domains containing protein		LisH and RanBPM domains containing protein;(source:Araport11)
AT1G61215.1	protein_coding	bromodomain 4	Bromodomain protein with a DNA binding motif	bromodomain 4;(source:Araport11)
AT1G61105.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT1G61097.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT1G67850.2	protein_coding	Protein of unknown function (DUF707)		lysine ketoglutarate reductase trans-splicing protein (DUF707);(source:Araport11)
AT1G67840.2	protein_coding	chloroplast sensor kinase	Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases.  CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.	chloroplast sensor kinase;(source:Araport11)
AT1G67800.3	protein_coding	Copine (Calcium-dependent phospholipid-binding protein) family		Copine (Calcium-dependent phospholipid-binding protein) family;(source:Araport11)
AT1G35470.2	protein_coding	SPla/RYanodine receptor (SPRY) domain-containing protein	Encodes a homologue of human RanBPM that belongs to the uncharacterized family of plant SPRY, LisH, CTLH and CRA domain-containing proteins.	SPla/RYanodine receptor (SPRY) domain-containing protein;(source:Araport11)
AT1G11870.3	protein_coding	Seryl-tRNA synthetase	Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	Seryl-tRNA synthetase;(source:Araport11)
AT1G34097.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.3e-158 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10)
AT1G34120.3	protein_coding	inositol polyphosphate 5-phosphatase I	Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.	inositol polyphosphate 5-phosphatase I;(source:Araport11)
AT1G06470.2	protein_coding	Nucleotide/sugar transporter family protein		Nucleotide/sugar transporter family protein;(source:Araport11)
AT1G06640.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase The mRNA is cell-to-cell mobile.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G06475.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G57820.2	protein_coding	Zinc finger (C3HC4-type RING finger) family protein	Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro.  The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.	Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G22590.2	protein_coding	AGAMOUS-like 87		AGAMOUS-like 87;(source:Araport11)
AT1G53200.2	protein_coding			TAF RNA polymerase I subunit A;(source:Araport11)
AT1G53160.2	protein_coding	squamosa promoter binding protein-like 4	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors.  Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change.  Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	squamosa promoter binding protein-like 4;(source:Araport11)
AT1G53285.1	protein_coding			plant thionin family protein;(source:Araport11)
AT1G30200.2	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G13560.2	protein_coding	aminoalcoholphosphotransferase 1	Encodes aminoalcoholphosphotransferase AAPT1.	aminoalcoholphosphotransferase 1;(source:Araport11)
AT1G13460.2	protein_coding	Protein phosphatase 2A regulatory B subunit family protein	Encodes protein phosphatase 2A (PP2A) B'theta subunit.  Targeted to peroxisomes.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT1G12935.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative polyprotein, blastp match of 48%25 identity and 1.9e-06 P-value to GP|13957647|gb|AAK50602.1|AC084404_27|AC084404 putative polyprotein {Oryza sativa};(source:TAIR10)
AT1G12805.1	protein_coding	nucleotide binding		nucleotide binding protein;(source:Araport11)
AT1G28090.2	protein_coding	Polynucleotide adenylyltransferase family protein		Polynucleotide adenylyltransferase family protein;(source:Araport11)
AT1G28100.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G28110.2	protein_coding	serine carboxypeptidase-like 45		serine carboxypeptidase-like 45;(source:Araport11)
AT1G04990.2	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G56415.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT1G64750.2	protein_coding	deletion of SUV3 suppressor 1(I)		deletion of SUV3 suppressor 1(I);(source:Araport11)
AT1G54840.2	protein_coding	HSP20-like chaperones superfamily protein	Encodes an atypical member of the sHSP20 family that is involved in histone demethylation. Loss of function mutations show increased methylation. IMD2 co-localizes to the nucleus with, and physically interacts with, IMD1, a protein involved in RNA directed DNA methylation. IMD2 contains an alpha crystallin domain , that is required for its function.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G54830.3	protein_coding	nuclear factor Y, subunit C3	Encodes a NUCLEAR FACTOR-Y C (NF-YC) homologue NF-YC3. NF-YC3., NF-YC4 and NF-YC9 redundantly modulate GA- and ABA-mediated seed germination.	nuclear factor Y, subunit C3;(source:Araport11)
AT1G54920.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G18900.2	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G19140.2	protein_coding			ubiquinone biosynthesis COQ9-like protein;(source:Araport11)
AT1G35745.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 2.5e-62 P-value blast match to GB:CAA38906 Tam3-transposase (hAT-element) (Antirrhinum majus);(source:TAIR10)
AT1G52905.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G52855.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G52827.1	protein_coding	cadmium tolerance 1	Cysteine-rich protein that confers cadmium tolerance to yeast. Homologs are also found in rice, Brassica rapa and pine.	cadmium tolerance 1;(source:Araport11)
AT1G76440.2	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G76510.2	protein_coding	ARID/BRIGHT DNA-binding domain-containing protein		ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT1G55810.3	protein_coding	uridine kinase-like 3	One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 3;(source:Araport11)
AT1G55810.2	protein_coding	uridine kinase-like 3	One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 3;(source:Araport11)
AT1G55880.2	protein_coding	Pyridoxal-5'-phosphate-dependent enzyme family protein		Pyridoxal-5-phosphate-dependent enzyme family protein;(source:Araport11)
AT1G49730.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G14380.2	protein_coding	IQ-domain 28	Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 28;(source:Araport11)
AT1G14440.2	protein_coding	homeobox protein 31		homeobox protein 31;(source:Araport11)
AT1G14270.2	protein_coding	CAAX amino terminal protease family protein		CAAX amino terminal protease family protein;(source:Araport11)
AT1G14400.2	protein_coding	ubiquitin carrier protein 1	ubiquitin carrier protein	ubiquitin carrier protein 1;(source:Araport11)
AT1G71691.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G71696.2	protein_coding	carboxypeptidase D, putative	Encodes a Putative Zn2+ carboxypeptidase, 4 splice variants have been identified but not characterized for different functions and/or expression patterns.SOL1 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol1 partially suppresses the short root phenotype caused  by CLE19 overexpression.	carboxypeptidase D;(source:Araport11)
AT1G71860.2	protein_coding	protein tyrosine phosphatase 1	Encodes a protein with  tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.	protein tyrosine phosphatase 1;(source:Araport11)
AT1G19800.2	protein_coding	trigalactosyldiacylglycerol 1	Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane.  Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	trigalactosyldiacylglycerol 1;(source:Araport11)
AT1G19800.3	protein_coding	trigalactosyldiacylglycerol 1	Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane.  Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	trigalactosyldiacylglycerol 1;(source:Araport11)
AT1G29390.2	protein_coding	cold regulated 314 thylakoid membrane 2	Integral membrane protein in the inner  envelope of chloroplasts. Provide  freezing tolerance.	cold regulated 314 thylakoid membrane 2;(source:Araport11)
AT1G18265.1	protein_coding	Protein of unknown function, DUF593		zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT1G18470.2	protein_coding	Transmembrane Fragile-X-F-associated protein		Transmembrane Fragile-X-F-associated protein;(source:Araport11)
AT1G03310.2	protein_coding	debranching enzyme 1	Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex.  Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.	debranching enzyme 1;(source:Araport11)
AT1G76380.2	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT1G76380.3	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT1G13860.4	protein_coding	QUASIMODO2 LIKE 1	Encodes QUASIMODO2 LIKE1 (QUL1), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.	QUASIMODO2 LIKE 1;(source:Araport11)
AT1G22180.3	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G63110.3	protein_coding	GPI transamidase subunit PIG-U		GPI transamidase subunit PIG-U;(source:Araport11)
AT1G63140.2	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT1G63055.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G58200.2	protein_coding	MSCS-like 3	A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity.	MSCS-like 3;(source:Araport11)
AT1G58242.1	protein_coding	Plant thionin family protein		Plant thionin family protein;(source:Araport11)
AT1G47490.2	protein_coding	RNA-binding protein 47C		RNA-binding protein 47C;(source:Araport11)
AT1G47540.2	protein_coding	Scorpion toxin-like knottin superfamily protein		Scorpion toxin-like knottin superfamily protein;(source:Araport11)
AT1G47625.1	pseudogene		pseudogene of seven transmembrane domain protein	pseudogene of seven transmembrane domain protein;(source:Araport11)
AT1G47606.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G47603.1	protein_coding	purine permease 19	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 19;(source:Araport11)
AT1G47595.1	pseudogene			pseudogene of RAB GTPase homolog A2D;(source:Araport11)
AT1G47565.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);retrotransposon gag protein, contains Pfam:PF03732 Retrotransposon gag protein;(source:TAIR10)
AT1G63010.2	protein_coding	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein	Encodes an SPX domain protein that transports Pi into the vacuole and is essential for phosphate homeostasis.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT1G16880.2	protein_coding	uridylyltransferase-related	Encodes a ACT domain-containing protein.  The ACT domain, named after bacterial aspartate kinase, chorismate mutase and TyrA (prephenate dehydrogenase), is a regulatory domain that serves as an amino acid-binding site in feedback-regulated amino acid metabolic enzymes. The mRNA is cell-to-cell mobile.	uridylyltransferase-like protein;(source:Araport11)
AT1G16840.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G30980.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 4.2e-21 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain);(source:TAIR10)
AT1G30975.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G30945.1	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G30921.1	pseudogene			pseudogene of F-box family protein;(source:Araport11)
AT1G27360.2	protein_coding	squamosa promoter-like 11	In conjunction with SPL10 and SPL2, SPL11 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.	squamosa promoter-like 11;(source:Araport11)
AT1G27370.2	protein_coding	squamosa promoter binding protein-like 10	In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.  SPL10 also controls lamina shape during vegetative development.	squamosa promoter binding protein-like 10;(source:Araport11)
AT1G70410.3	protein_coding	beta carbonic anhydrase 4	Encodes a putative beta-carbonic anhydrase betaCA4.  Together with betaCA1 (At3g01500) regulates CO2-controlled stomatal movements in guard cells.	beta carbonic anhydrase 4;(source:Araport11)
AT1G80040.2	protein_coding			ubiquitin system component Cue;(source:Araport11)
AT1G80000.2	protein_coding	CASC3/Barentsz eIF4AIII binding		CASC3/Barentsz eIF4AIII binding protein;(source:Araport11)
AT1G79970.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G80245.2	protein_coding	Spc97 / Spc98 family of spindle pole body (SBP) component		Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT1G19394.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G19397.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G19350.3	protein_coding	Brassinosteroid signalling positive regulator (BZR1) family protein	Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes. Works with BRAVO to regulate QC division in the root. AT1G19350.3(BES1-L) is the long isoform of BES1. It contains an additive N-terminal NLS compared with the canonical BES1-S. This recently evolved isoform is expressed specifically in the Arabidopsis lineage	Brassinosteroid signaling positive regulator (BZR1) family protein;(source:Araport11)
AT1G19350.5	protein_coding	Brassinosteroid signalling positive regulator (BZR1) family protein	Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes. Works with BRAVO to regulate QC division in the root.	Brassinosteroid signaling positive regulator (BZR1) family protein;(source:Araport11)
AT1G19350.4	protein_coding	Brassinosteroid signalling positive regulator (BZR1) family protein	Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes. Works with BRAVO to regulate QC division in the root.	Brassinosteroid signaling positive regulator (BZR1) family protein;(source:Araport11)
AT1G19392.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.5e-10 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G51600.2	protein_coding	ZIM-LIKE 2	member of a novel family of plant-specific GATA-type transcription factors.	ZIM-LIKE 2;(source:Araport11)
AT1G51690.2	protein_coding	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	55 kDa B regulatory subunit of phosphatase 2A  mRNA,	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;(source:Araport11)
AT1G22910.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G22910.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G22920.2	protein_coding	COP9 signalosome 5A	AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype.	COP9 signalosome 5A;(source:Araport11)
AT1G79880.3	protein_coding	RNA recognition motif (RRM)-containing protein		RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT1G79880.2	protein_coding	RNA recognition motif (RRM)-containing protein		RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT1G79810.2	protein_coding	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein	Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes.	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G79790.2	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	Encodes a chloroplast-localized FMN hydrolase that whose phosphatase activity is FMN-specific.	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G16515.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G16560.2	protein_coding	Per1-like family protein		Per1-like family protein;(source:Araport11)
AT1G16560.3	protein_coding	Per1-like family protein		Per1-like family protein;(source:Araport11)
AT1G16610.2	protein_coding	arginine/serine-rich 45	Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.  Also involved in plant sugar response.  sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.	arginine/serine-rich 45;(source:Araport11)
AT1G62250.2	protein_coding			orotidine 5-phosphate decarboxylase;(source:Araport11)
AT1G62085.1	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G62075.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.3e-28 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G62055.1	pseudogene			pseudogene of Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G62305.2	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G52315.1	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT1G43145.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G43170.2	protein_coding	ribosomal protein 1	Encodes a cytoplasmic ribosomal protein. The mRNA is cell-to-cell mobile.	ribosomal protein 1;(source:Araport11)
AT1G43195.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.6e-11 P-value blast match to GB:CAA36616 ORF4 (Ty1_Copia-element) (Solanum tuberosum);(source:TAIR10)
AT1G43220.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G28570.2	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT1G28530.2	protein_coding		Encodes a protein that localizes to both chloroplasts and amyloplasts and is required for both chloroplast and mesophyll development.	deneddylase;(source:Araport11)
AT1G28695.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein		Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G28610.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G28580.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G74710.2	protein_coding	ADC synthase superfamily protein	Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid.  Its function may be redundant with that of ICS2 (AT1G18870).	ADC synthase superfamily protein;(source:Araport11)
AT1G74420.2	protein_coding	fucosyltransferase 3	Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1.	fucosyltransferase 3;(source:Araport11)
AT1G64610.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G67210.2	protein_coding	Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein		Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT1G66940.2	protein_coding	protein kinase-related		kinase-like protein;(source:Araport11)
AT1G67090.2	protein_coding	ribulose bisphosphate carboxylase small chain 1A	Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410). Functions to yield sufficient Rubisco content for leaf photosynthetic capacity.	ribulose bisphosphate carboxylase small chain 1A;(source:Araport11)
AT1G36915.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to putative DNA/RNA binding protein, blastp match of 29%25 identity and 3.7e-07 P-value to GP|21952509|gb|AAM82603.1|AF525305_1|AF525305 putative DNA/RNA binding protein {Brassica napus};(source:TAIR10)
AT1G36890.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 3.2e-20 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus);(source:TAIR10)
AT1G36936.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to Putative copia-type polyprotein, blastp match of 43%25 identity and 2.1e-28 P-value to GP|15209144|gb|AAK91877.1|AC091665_3|AC091665 Putative copia-type polyprotein {Oryza sativa};(source:TAIR10)
AT1G36933.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.2e-15 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT1G36927.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.8e-29 P-value blast match to GB:BAA01703 ORF (Ty1_Copia-element) (Drosophila simulans);(source:TAIR10)
AT1G79580.2	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G79580.3	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G79630.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G79650.3	protein_coding	Rad23 UV excision repair protein family	Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.	Rad23 UV excision repair protein family;(source:Araport11)
AT1G10660.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G10660.4	protein_coding			transmembrane protein;(source:Araport11)
AT1G10660.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G10740.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G54310.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G54390.3	protein_coding	PHD finger protein-related	ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	PHD finger protein-like protein;(source:Araport11)
AT1G54390.4	protein_coding	PHD finger protein-related	ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	PHD finger protein-like protein;(source:Araport11)
AT1G54390.2	protein_coding	PHD finger protein-related	ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	PHD finger protein-like protein;(source:Araport11)
AT1G54217.1	protein_coding	Ribosomal protein L18ae family		Ribosomal protein L18ae family;(source:Araport11)
AT1G54360.2	protein_coding	TBP-ASSOCIATED FACTOR 6B	Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.	TBP-ASSOCIATED FACTOR 6B;(source:Araport11)
AT1G17285.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G17140.2	protein_coding	interactor of constitutive active rops 1	Encodes a ROP/RAC effector, designated interactor of constitutive active ROPs 1 (ICR1), that interacts with GTP-bound ROPs. ICR1 is a scaffold mediating formation of protein complexes that are required for cell polarity.  ICR1 is comprised of coiled-coil domains and forms complexes with itself and the exocyst vesicle-tethering complex subunit SEC3.	interactor of constitutive active rops 1;(source:Araport11)
AT1G55675.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G70100.3	protein_coding			neurofilament heavy protein;(source:Araport11)
AT1G03687.2	protein_coding	DTW domain-containing protein		DTW domain-containing protein;(source:Araport11)
AT1G03457.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G48195.1	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G13635.1	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT1G24580.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G24510.2	protein_coding	TCP-1/cpn60 chaperonin family protein		TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT1G03780.2	protein_coding	targeting protein for XKLP2	Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.	targeting protein for XKLP2;(source:Araport11)
AT1G03860.3	protein_coding	prohibitin 2	prohibitin 2	prohibitin 2;(source:Araport11)
AT1G03860.2	protein_coding	prohibitin 2	prohibitin 2	prohibitin 2;(source:Araport11)
AT1G04020.2	protein_coding	breast cancer associated RING 1	Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein-protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.	breast cancer associated RING 1;(source:Araport11)
AT1G03960.2	protein_coding	Calcium-binding EF hand family protein		Calcium-binding EF hand family protein;(source:Araport11)
AT1G09840.3	protein_coding	shaggy-like protein kinase 41		shaggy-like protein kinase 41;(source:Araport11)
AT1G09660.2	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT1G64065.1	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT1G64255.1	protein_coding	MuDR family transposase		MuDR family transposase;(source:Araport11)
AT1G64235.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G02990.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G02850.4	protein_coding	beta glucosidase 11		beta glucosidase 11;(source:Araport11)
AT1G02850.3	protein_coding	beta glucosidase 11		beta glucosidase 11;(source:Araport11)
AT1G53580.2	protein_coding	glyoxalase II  3	Mononuclear Fe(II)-containing member of  the b-lactamase fold superfamily. ETHE1 is homodimeric in  solution, exhibits low-level esterase activity, and specifically binds  a single Fe(II) atom in the active site.	glyoxalase II 3;(source:Araport11)
AT1G07570.2	protein_coding	Protein kinase superfamily protein	Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues	Protein kinase superfamily protein;(source:Araport11)
AT1G07420.2	protein_coding	sterol 4-alpha-methyl-oxidase 2-1	Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA. The sterol 4alpha-methyl oxidase2 family proteins SMO2-1 and SMO2-2 function partially through effects on auxin accumulation, auxin response and PIN1 expression to regulate embryogenesis in Arabidopsis.	sterol 4-alpha-methyl-oxidase 2-1;(source:Araport11)
AT1G75180.3	protein_coding	Erythronate-4-phosphate dehydrogenase family protein		Erythronate-4-phosphate dehydrogenase family protein;(source:Araport11)
AT1G75230.2	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT1G77080.5	protein_coding	K-box region and MADS-box transcription factor family protein 	MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G76955.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT1G08810.2	protein_coding	myb domain protein 60	putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.	myb domain protein 60;(source:Araport11)
AT1G08750.3	protein_coding	Peptidase C13 family	GPI8/PIG-K homolog involved in stomata development. Loss of function alleles do not transmit through the pollen.	Peptidase C13 family;(source:Araport11)
AT1G80940.2	protein_coding			Snf1 kinase interactor-like protein;(source:Araport11)
AT1G80960.2	protein_coding	F-box and Leucine Rich Repeat domains containing protein		F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G80960.3	protein_coding	F-box and Leucine Rich Repeat domains containing protein		F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G60850.3	protein_coding	DNA-directed RNA polymerase family protein		DNA-directed RNA polymerase family protein;(source:Araport11)
AT1G59865.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G59865.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G59840.2	protein_coding	cofactor assembly of complex C		cofactor assembly of complex C;(source:Araport11)
AT1G59830.2	protein_coding	protein phosphatase 2A-2	Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].	protein phosphatase 2A-2;(source:Araport11)
AT1G34220.2	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT1G69250.2	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT1G69310.2	protein_coding	WRKY DNA-binding protein 57	Encodes WRKY57, a member of the WRKY Transcription Factor. Activation of WRKY57 confers drought tolerance.	WRKY DNA-binding protein 57;(source:Araport11)
AT1G69230.2	protein_coding	SPIRAL1-like2	SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.	SPIRAL1-like2;(source:Araport11)
AT1G07780.3	protein_coding	phosphoribosylanthranilate isomerase 1	Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family. The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT1G07700.3	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT1G07700.2	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT1G07890.3	protein_coding	ascorbate peroxidase 1	Encodes a cytosolic ascorbate peroxidase APX1.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. The mRNA is cell-to-cell mobile.	ascorbate peroxidase 1;(source:Araport11)
AT1G07730.2	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT1G07645.1	protein_coding	dessication-induced 1VOC superfamily protein	Ortholog of HC205/ Xhdsi-1voc from Xerophyta humilis. Member of VOC metalloenzyme superfamily. Not involved in response to abiotic stress, unlike its Xerophyta ortholog.	dessication-induced 1VOC superfamily protein;(source:Araport11)
AT1G07840.2	protein_coding	Sas10/Utp3/C1D family		Sas10/Utp3/C1D family;(source:Araport11)
AT1G07770.2	protein_coding	ribosomal protein S15A	Encodes cytoplasmic ribosomal protein S15a.	ribosomal protein S15A;(source:Araport11)
AT1G63640.2	protein_coding	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain		P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT1G63650.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Mutants are defective in jasmonate-induced anthocyanin accumulation. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G63610.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G63770.2	protein_coding	Peptidase M1 family protein		Peptidase M1 family protein;(source:Araport11)
AT1G63690.2	protein_coding	SIGNAL PEPTIDE PEPTIDASE-LIKE 2		SIGNAL PEPTIDE PEPTIDASE-LIKE 2;(source:Araport11)
AT1G63660.2	protein_coding	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative		GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase;(source:Araport11)
AT1G70550.2	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT1G70580.2	protein_coding	alanine-2-oxoglutarate aminotransferase 2	Encodes a protein with glyoxylate aminotransferase activity. It can act on a number of different small substrates and amino acids in vitro.	alanine-2-oxoglutarate aminotransferase 2;(source:Araport11)
AT1G70490.3	protein_coding	Ras-related small GTP-binding family protein	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	Ras-related small GTP-binding family protein;(source:Araport11)
AT1G21610.2	protein_coding	wound-responsive family protein		wound-responsive family protein;(source:Araport11)
AT1G21350.3	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT1G21370.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G21395.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G21480.2	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT1G75020.2	protein_coding	lysophosphatidyl acyltransferase 4		lysophosphatidyl acyltransferase 4;(source:Araport11)
AT1G18640.2	protein_coding	3-phosphoserine phosphatase	Encodes a 3-phosphoserine phosphatase acting in the last step of serine biosynthesis within the chloroplast. Essential for embryo, pollen and root development.	3-phosphoserine phosphatase;(source:Araport11)
AT1G56720.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G57540.2	protein_coding			40S ribosomal protein;(source:Araport11)
AT1G73650.3	protein_coding	Protein of unknown function (DUF1295)		3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295);(source:Araport11)
AT1G71530.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G23340.2	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal proteinase, putative (DUF239);(source:Araport11)
AT1G23360.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a 2-phytyl-1,4-naphthoquinone methyltransferase that catalyzes the final step in phylloquinone (vitamin K1) biosynthesis.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G23360.3	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a 2-phytyl-1,4-naphthoquinone methyltransferase that catalyzes the final step in phylloquinone (vitamin K1) biosynthesis.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G23240.2	protein_coding	Caleosin-related family protein		Caleosin-related family protein;(source:Araport11)
AT1G30510.3	protein_coding	root FNR 2	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	root FNR 2;(source:Araport11)
AT1G30475.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G45165.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT1G48860.2	protein_coding	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	5-enolpyruvylshikimate-3-phosphate synthase involved in shikimic acid biosynthesis.	RNA 3-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta;(source:Araport11)
AT1G31500.2	protein_coding	DNAse I-like superfamily protein	HESP identified based on similarity to nocturnins and presence circadian regulatory elements in the promoter. It functions as a Mg(II) dependent poly(A) exoribonuclease.It is under circadian regulation and expressed at night. Knockdowns affect the regulation of circadian genes CCA1 and TOC1.	DNAse I-like superfamily protein;(source:Araport11)
AT1G31500.3	protein_coding	DNAse I-like superfamily protein	HESP identified based on similarity to nocturnins and presence circadian regulatory elements in the promoter. It functions as a Mg(II) dependent poly(A) exoribonuclease.It is under circadian regulation and expressed at night. Knockdowns affect the regulation of circadian genes CCA1 and TOC1.	DNAse I-like superfamily protein;(source:Araport11)
AT1G31600.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G31600.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G26300.2	protein_coding	BSD domain-containing protein		BSD domain-containing protein;(source:Araport11)
AT1G26260.2	protein_coding	cryptochrome-interacting basic-helix-loop-helix 5	Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix).  Related to CIB1 (AT4G34530).  CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.	cryptochrome-interacting basic-helix-loop-helix 5;(source:Araport11)
AT1G23465.1	protein_coding	Peptidase S24/S26A/S26B/S26C family protein	Mitochondrial ATP-independent protease	Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT1G23510.2	protein_coding			OBP32pep protein;(source:Araport11)
AT1G23670.2	protein_coding	Domain of unknown function (DUF220)		OBP32pep protein, putative (DUF220);(source:Araport11)
AT1G23440.2	protein_coding	Peptidase C15, pyroglutamyl peptidase I-like		Peptidase C15, pyroglutamyl peptidase I-like protein;(source:Araport11)
AT1G43835.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mariner-like transposase family, has a 2.7e-63 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max);(source:TAIR10)
AT1G43845.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hypothetical protein;(source:TAIR10)
AT1G43897.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to ORF-c, blastp match of 58%25 identity and 1.7e-32 P-value to GP|6069570|dbj|BAA85461.1||AB022081 ORF-c {Brassica rapa};(source:TAIR10)
AT1G36445.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to OSJNBa0026J14.30, blastp match of 62%25 identity and 5.5e-108 P-value to GP|20146463|dbj|BAB89243.1||AP004231 OSJNBa0026J14.30 {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT1G36485.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (Ptta/En/Spm), has a 2.2e-94 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G36495.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G36605.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 2.0e-12 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family);(source:TAIR10)
AT1G36595.1	pseudogene			pseudogene of F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G77810.2	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT1G77885.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G77930.2	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G37095.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 4.0e-16 P-value blast match to GB:AAA35184 ORF2 (Gypsy_Ty3-element) (Saccharomyces cerevisiae);(source:TAIR10)
AT1G29120.2	protein_coding	Hydrolase-like protein family		Hydrolase-like protein family;(source:Araport11)
AT1G76680.2	protein_coding	12-oxophytodienoate reductase 1	Encodes a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases.  One of the closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer.  Shows activity towards 2,4,6-trinitrotoluene.  Expressed predominately in root.  Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. Predicted to be a cytosolic protein.	12-oxophytodienoate reductase 1;(source:Araport11)
AT1G76710.2	protein_coding	SET domain group 26		SET domain group 26;(source:Araport11)
AT1G72830.2	protein_coding	nuclear factor Y, subunit A3	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. Expression is upregulated in the shoot of cax1/cax3 mutant.	nuclear factor Y, subunit A3;(source:Araport11)
AT1G72645.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G72650.2	protein_coding	TRF-like 6	Arabidopsis thaliana myb family transcription factor (At1g72650)	TRF-like 6;(source:Araport11)
AT1G72050.2	protein_coding	transcription factor IIIA	Encodes a transcriptional factor TFIIIA required for transcription of 5S rRNA gene.  5S rRNA is the smallest constituent of the ribosome.  Work on one of the gene models AT1G72050.2 showed that it encodes a protein with nine Cys(2)-His(2)-type zinc fingers, a characteristic feature of TFIIIA proteins. AT1G72050.2 also contains a 23 amino acid spacer between fingers 1 and 2, a 66 amino acid spacer between fingers 4 and 5, and a 50 amino acid non-finger C-terminal tail.  in vitro assay demonstrated that AT1g72050.2 binds to 5S rDNA  and efficiently stimulates the transcription of 5S rRNA. AT1g72050.2 also binds to 5S rRNA in vitro. AT1g72050.2 is located at several nuclear foci including the nucleolus and is absent from the cytoplasm.	transcription factor IIIA;(source:Araport11)
AT1G72130.2	protein_coding	Major facilitator superfamily protein	Tonoplast localized pH dependent, low affinity nitrogen transporter.In shoots,  expressed in leaf veins and mesophyll. In roots, GUS activity was detected in root vascular stele. More highly expressed in roots.	Major facilitator superfamily protein;(source:Araport11)
AT1G20640.2	protein_coding	Plant regulator RWP-RK family protein		Plant regulator RWP-RK family protein;(source:Araport11)
AT1G20620.2	protein_coding	catalase 3	Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. The mRNA is cell-to-cell mobile.	catalase 3;(source:Araport11)
AT1G22140.2	protein_coding			zinc finger CCCH domain protein;(source:Araport11)
AT1G45688.2	protein_coding		CC1 is a plant specific gene that interacts with  with the cellulose synthase complex and microtubules. It appears to play a role in localizing CESA to the membrane, microtuble dynamics , particularly during salt stress.	transmembrane protein;(source:Araport11)
AT1G17980.2	protein_coding	poly(A) polymerase 1	Encodes a poly(A) polymerase. Located in the nucleus.  It limits founder-cell recruitment to organ primordia and suppresses the salicylic acid-independent immune response downstream of EDS1/PAD4.	poly(A) polymerase 1;(source:Araport11)
AT1G17890.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G17890.3	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G17780.2	protein_coding		ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	transmembrane protein;(source:Araport11)
AT1G49950.3	protein_coding	telomere repeat binding factor 1	Encodes a telomeric DNA binding protein and Single Myb Histone (SMH) gene family member. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats.Mutations in TRB1 and TRB3 enhance the lhp1 mutant phenotype. Triple mutants are more strongly affected than the respective double mutants with lhp1. TRB1 binds non-H3K27me3 target genes predominantly at the transcription start sites and its presence increases the expression of several of these targets, enriched for functions of primary metabolism. At H3K27me3 target genes, TRB1 binding is more distributed across gene bodies and at extended promoter regions, corresponding to an enrichment of putative binding sites "RMCCTAR". At these genes, TRB1 particiaptes in the repression because several direct targets are further upregulated in trb1 lhp1 double mutants as compared to lhp1 mutants.	telomere repeat binding factor 1;(source:Araport11)
AT1G43724.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.1e-61 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G43723.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, similar to En/Spm-like transposon-like protein, blastp match of 34%25 identity and 3.6e-16 P-value to GP|18565437|dbj|BAB84624.1||AP003450 En/Spm-like transposon-like protein {Oryza sativa (japonica cultivar-group)};(source:TAIR10)
AT1G43666.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G25420.2	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT1G25420.3	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT1G25470.2	protein_coding	AP2 domain-containing transcription factor family protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	AP2 domain-containing transcription factor family protein;(source:Araport11)
AT1G05710.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G05710.4	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G78290.2	protein_coding	Protein kinase superfamily protein	encodes a member of SNF1-related protein kinase (SnRK2) family whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress and dehydration.	Protein kinase superfamily protein;(source:Araport11)
AT1G78260.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G28260.2	protein_coding	Telomerase activating protein Est1		Telomerase activating protein Est1;(source:Araport11)
AT1G71310.3	protein_coding	cobalt ion binding	A protein coding gene with unknown function.  The 5’ UTR and the first two exons and introns of this gene overlap with a RNA coding gene TER1. TER1 (GenBank accession no. HQ401284) encodes a putative template sequence (5&#8242;-CTAAACCCTA-3&#8242;) corresponding to 1.5 copies of the Arabidopsis telomere repeat (PNAS 2011, 108:73-78).	cobalt ion binding protein;(source:Araport11)
AT1G24265.2	protein_coding	Protein of unknown function (DUF1664)		bZIP transcription factor, putative (DUF1664);(source:Araport11)
AT1G28395.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G16410.2	protein_coding	cytochrome p450 79f1	member of CYP79F The mRNA is cell-to-cell mobile.	cytochrome p450 79f1;(source:Araport11)
AT1G25280.2	protein_coding	tubby like protein 10	Member of TLP family	tubby like protein 10;(source:Araport11)
AT1G06790.2	protein_coding	RNA polymerase Rpb7 N-terminal domain-containing protein	Encodes a subunit of RNA polymerase III involved in maintaining global RNA homeostasis, not just that of genes transcribed by RNA pol III.	RNA polymerase Rpb7 N-terminal domain-containing protein;(source:Araport11)
AT1G06770.2	protein_coding	DREB2A-interacting protein 1	Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.	DREB2A-interacting protein 1;(source:Araport11)
AT1G66700.3	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	A member of the Arabidopsis SABATH methyltransferase gene family.  Encodes PXMT1, a methyltransferase that methylates 1,7-paraxanthine.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G69040.2	protein_coding	ACT domain repeat 4	ACT-domain containing protein involved in feedback regulation of amino acid metabolism	ACT domain repeat 4;(source:Araport11)
AT1G69080.2	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT1G32505.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);Mutator-like transposase family;(source:TAIR10)
AT1G32370.3	protein_coding	tobamovirus multiplication 2B	Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta. The mRNA is cell-to-cell mobile.	tobamovirus multiplication 2B;(source:Araport11)
AT1G32400.2	protein_coding	tobamovirus multiplication 2A	TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.	tobamovirus multiplication 2A;(source:Araport11)
AT1G51990.2	protein_coding	O-methyltransferase family protein		O-methyltransferase family protein;(source:Araport11)
AT1G52087.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35110.1);(source:TAIR10)
AT1G80270.2	protein_coding	PENTATRICOPEPTIDE REPEAT 596		PENTATRICOPEPTIDE REPEAT 596;(source:Araport11)
AT1G80570.3	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT1G80570.2	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT1G20510.2	protein_coding	OPC-8:0 CoA ligase1		OPC-8:0 CoA ligase1;(source:Araport11)
AT1G31830.2	protein_coding	Amino acid permease family protein	Encodes POLYAMINE UPTAKE TRANSPORTER 2, an amino acid permease family protein.	Amino acid permease family protein;(source:Araport11)
AT1G31850.3	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G31835.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G23820.2	protein_coding	spermidine synthase 1	Spermidine synthase.	spermidine synthase;(source:Araport11)
AT1G18660.4	protein_coding	zinc finger (C3HC4-type RING finger) family protein	Membrane localized protein of unknown function. Involved in negative regulation of immune response. Mutants have increased resistance to pathogens.	zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G73600.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a S-adenosyl-L-methionine-dependent phosphoethanolamine N-methyltransferase whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in roots. It catalyzes the three sequential P-base methylation of phosphoethanolamine to phosphocholine.  Homologous biochemical function to NMT1 (At3g18000). Double mutants of NMT1 and NMT3 are defective in leaf, root, flower, seed, and pollen development.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G52630.2	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G52690.2	protein_coding	Late embryogenesis abundant protein (LEA) family protein		Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT1G52615.1	other_rna	unknown gene		other_RNA;(source:Araport11)
AT1G01240.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G01240.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G32700.2	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT1G14180.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G14240.2	protein_coding	GDA1/CD39 nucleoside phosphatase family protein		GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11)
AT1G14150.2	protein_coding	PsbQ-like 2	Encodes a subunit of the NAD(P)H dehydrogenase complex located in the chloroplast thylakoid lumen.	PsbQ-like 2;(source:Araport11)
AT1G42396.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42393.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03979.1);(source:TAIR10)
AT1G42385.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42377.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42367.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30700.1);(source:TAIR10)
AT1G08970.4	protein_coding	nuclear factor Y, subunit C9	Encodes a NUCLEAR FACTOR-Y C (NF-YC) homologue NF-YC9. NF-YC3., NF-YC4 and NF-YC9 redundantly modulate GA- and ABA-mediated seed germination.	nuclear factor Y, subunit C9;(source:Araport11)
AT1G08970.3	protein_coding	nuclear factor Y, subunit C9	Encodes a NUCLEAR FACTOR-Y C (NF-YC) homologue NF-YC9. NF-YC3., NF-YC4 and NF-YC9 redundantly modulate GA- and ABA-mediated seed germination.	nuclear factor Y, subunit C9;(source:Araport11)
AT1G09060.2	protein_coding	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase	JMJ24 is a nuclear localized JmjC domain containing protein. It has been shown to bind to transcribed regions AtSN1 and solo LTR and the promoter of SDC. JMJ24 appears to regulate basal levels of transcription of silenced loci in part by controlling methylation in heterochromatic regions.	JmjC domain protein JMJ24;(source:Araport11)
AT1G09090.2	protein_coding	respiratory burst oxidase homolog B	NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB  pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally  regulated manner. ABA caused accumulation of AtrbohB-ß mRNA and prevented prevented AtrbohB-a mRNA expression in fresh seeds.	respiratory burst oxidase-like protein;(source:Araport11)
AT1G15790.2	protein_coding			mediator of RNA polymerase II transcription subunit 15a-like protein;(source:Araport11)
AT1G60560.2	protein_coding	SWIM zinc finger family protein		SWIM zinc finger family protein;(source:Araport11)
AT1G60610.2	protein_coding	SBP (S-ribonuclease binding protein) family protein		SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT1G60730.2	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G42602.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10)
AT1G42698.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.4e-54 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum);(source:TAIR10)
AT1G42635.1	pseudogene			pseudogene of zinc ion-binding protein;(source:Araport11)
AT1G47230.2	protein_coding	CYCLIN A3;4		CYCLIN A3;(source:Araport11)
AT1G61900.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G61810.2	protein_coding	beta-glucosidase 45		beta-glucosidase 45;(source:Araport11)
AT1G61820.3	protein_coding	beta glucosidase 46		beta glucosidase 46;(source:Araport11)
AT1G53040.2	protein_coding	Protein of unknown function (DUF616)		tRNA (met) cytidine acetyltransferase, putative (DUF616);(source:Araport11)
AT1G75080.2	protein_coding	Brassinosteroid signalling positive regulator (BZR1) family protein	Encodes a positive regulator of the brassinosteroid (BR) signalling pathway that mediates both downstream BR responses and negative feedback regulation of BR biosynthesis. There is evidence for phosphorylation-dependent nucleocytoplasmic shuttling of BZR1. GSK3-like kinases (including BIN2), 14-3-3 proteins, and the phosphatase BSU1 seem to participate in this process. Phosphorylation also appears to affect BZR1's transcriptional activities.	Brassinosteroid signaling positive regulator (BZR1) family protein;(source:Araport11)
AT1G74130.2	protein_coding	Rhomboid-related intramembrane serine protease family protein		Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT1G78810.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G33080.2	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G33060.2	protein_coding	NAC 014		NAC 014;(source:Araport11)
AT1G15220.2	protein_coding	cytochrome c biogenesis protein family	Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2.	cytochrome c biogenesis protein family;(source:Araport11)
AT1G15140.3	protein_coding	FAD/NAD(P)-binding oxidoreductase		FAD/NAD(P)-binding oxidoreductase;(source:Araport11)
AT1G15140.2	protein_coding	FAD/NAD(P)-binding oxidoreductase		FAD/NAD(P)-binding oxidoreductase;(source:Araport11)
AT1G63260.2	protein_coding	tetraspanin10	Member of TETRASPANIN family	tetraspanin10;(source:Araport11)
AT1G06170.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a bHLH transcription factor that together with bHLH010 and bHLH091 is important for the normal transcriptome of the developing Arabidopsis anther, possibly by forming a feed-forward loop with DYT1.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G06210.2	protein_coding	ENTH/VHS/GAT family protein		ENTH/VHS/GAT family protein;(source:Araport11)
AT1G72510.2	protein_coding	Protein of unknown function (DUF1677)		DUF1677 family protein (DUF1677);(source:Araport11)
AT1G72320.3	protein_coding	pumilio 23	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 23;(source:Araport11)
AT1G10570.2	protein_coding	Cysteine proteinases superfamily protein	Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation.	Cysteine proteinases superfamily protein;(source:Araport11)
AT1G43620.2	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a UDP-glucose:sterol-glucosyltransferase. ugt80b1 mutant plants have reduced steryl glycoside and acyl steryl glycoside levels, reduced seed size, and a transparent testa phenotype. The mutant seeds also have reduced levels of suberization and lipid polyester monomers. ugt80a2/b1 double mutants have normal levels of celluose and normal cold stress tolerance.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G78200.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G44750.2	protein_coding	purine permease 11	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 11;(source:Araport11)
AT1G12730.2	protein_coding	GPI transamidase subunit PIG-U		GPI transamidase subunit PIG-U;(source:Araport11)
AT1G32070.2	protein_coding	nuclear shuttle interacting	Encodes a  acetyltransferase (NSI) that is localized in the nucleus and chloroplast. It interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. In the chloroplast NSI functions in the dynamic reorganization  thylakoid membrane complexes.  NSI is highly transcribed in phloem and in xylem parenchyma cells, and in  the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is  turned off as tissues mature.Mutants have reduced melatonin and anthocyanin levels and  do not accumulate the PSI-LHCII state transition complex.	nuclear shuttle interacting;(source:Araport11)
AT1G63855.3	protein_coding	Putative methyltransferase family protein		Putative methyltransferase family protein;(source:Araport11)
AT1G63835.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 4.7e-17 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element);(source:TAIR10)
AT1G63830.2	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT1G02690.2	protein_coding	importin alpha isoform 6	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	importin alpha isoform 6;(source:Araport11)
AT1G02720.2	protein_coding	galacturonosyltransferase 5	Encodes a protein with putative galacturonosyltransferase activity.	galacturonosyltransferase 5;(source:Araport11)
AT1G10840.2	protein_coding	translation initiation factor 3 subunit H1	Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).	translation initiation factor 3 subunit H1;(source:Araport11)
AT1G10820.2	protein_coding	Protein of unknown function (DUF3755)		hypothetical protein (DUF3755);(source:Araport11)
AT1G22300.3	protein_coding	general regulatory factor 10	Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.	general regulatory factor 10;(source:Araport11)
AT1G22280.2	protein_coding	phytochrome-associated protein phosphatase type 2C	Encodes a phytochrome-associated protein, PAPP2C (phytochrome-associated protein phosphatase type 2C).  PAPP2C interacts in the nucleus with phyA (phytochrome A) and phyB.  Functions as a regulator of phytochrome-interacting factor PIF3 by dephosphorylating phytochromes in the nucleus.	phytochrome-associated protein phosphatase type 2C;(source:Araport11)
AT1G22370.2	protein_coding	UDP-glucosyl transferase 85A5		UDP-glucosyl transferase 85A5;(source:Araport11)
AT1G15430.2	protein_coding	Protein of unknown function (DUF1644)		hypothetical protein (DUF1644);(source:Araport11)
AT1G15440.2	protein_coding	periodic tryptophan protein 2	Encodes a nucleolar protein that is a ribosome biogenesis co-factor. Mutants display aberrant RNA processing and female gametophyte development.	periodic tryptophan protein 2;(source:Araport11)
AT1G33180.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 1.5e-05 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus);(source:TAIR10)
AT1G33260.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G33270.2	protein_coding	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein		Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein;(source:Araport11)
AT1G69840.4	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT1G69840.3	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT1G27600.2	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14.  IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT1G53870.2	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT1G53815.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G44575.2	protein_coding	Chlorophyll A-B binding family protein	Encoding PSII-S (CP22), a ubiquitous pigment-binding protein associated with photosystem II (PSII) of higher plants. Involved in nonphotochemical quenching rather than in photosynthesis. Mutant has a normal violaxanthin cycle but has a limited capacity of quenching singlet excited chlorophylls and is tolerant to lipid peroxidation.	Chlorophyll A-B binding family protein;(source:Araport11)
AT1G44446.2	protein_coding	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain	Encodes chlorophyllide <i>a</i> oxygenase which converts chlorophyllide <i>a</i> to chlorophyllide <i>b</i> by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide <i>a</i> .  Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll <i>b</i> and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22.	Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein;(source:Araport11)
AT1G44446.3	protein_coding	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain	Encodes chlorophyllide <i>a</i> oxygenase which converts chlorophyllide <i>a</i> to chlorophyllide <i>b</i> by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide <i>a</i> .  Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll <i>b</i> and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22.	Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein;(source:Araport11)
AT1G73210.2	protein_coding	Protein of unknown function (DUF789)		hypothetical protein (DUF789);(source:Araport11)
AT1G04625.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G26440.3	protein_coding	ureide permease 5	uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine	ureide permease 5;(source:Araport11)
AT1G48600.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a phosphoethanolamine N-methyltransferase that catalyses the last two methylation steps of the three sequential methylations of phosphoethanolamine (PEA) that are required for the synthesis of phosphocholine (PCho) in plants.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G48605.1	protein_coding	Flavoprotein	Encodes a protein similar to yeast HAL3, which regulates the cell cycle and tolerance to salt stress through inhibition of the PPZ1 type-1 protein phosphatase. AtHAL3b mRNA levels are induced by salt stress.  HAL3B presumably encodes for phosphopantothenoylcysteine decarboxylase being involved in Coenzyme A biosynthesis as indicated by functional complementation of a double mutant hal3 aaBb.	Flavoprotein;(source:Araport11)
AT1G48540.2	protein_coding	Outer arm dynein light chain 1 protein		Outer arm dynein light chain 1 protein;(source:Araport11)
AT1G48610.2	protein_coding	AT hook motif-containing protein		AT hook motif-containing protein;(source:Araport11)
AT1G48520.2	protein_coding	GLU-ADT subunit B	Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).	GLU-ADT subunit B;(source:Araport11)
AT1G48520.3	protein_coding	GLU-ADT subunit B	Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).	GLU-ADT subunit B;(source:Araport11)
AT1G29980.2	protein_coding	Protein of unknown function, DUF642		choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT1G29950.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G20030.2	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT1G05870.2	protein_coding	Protein of unknown function (DUF1685)		hypothetical protein (DUF1685);(source:Araport11)
AT1G05900.2	protein_coding	endonuclease III 2		endonuclease III 2;(source:Araport11)
AT1G06135.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G27760.3	protein_coding	interferon-related developmental regulator family protein / IFRD protein family	Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.	interferon-related developmental regulator family protein / IFRD protein family;(source:Araport11)
AT1G68285.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.5e-31 P-value blast match to T32E20 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);(source:TAIR10)
AT1G54790.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G54575.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G22660.2	protein_coding	Polynucleotide adenylyltransferase family protein		Polynucleotide adenylyltransferase family protein;(source:Araport11)
AT1G76120.2	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT1G23950.2	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT1G23950.3	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT1G23860.2	protein_coding	RS-containing zinc finger protein 21	Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RS-containing zinc finger protein 21;(source:Araport11)
AT1G23890.2	protein_coding	NHL domain-containing protein		NHL domain-containing protein;(source:Araport11)
AT1G23935.1	protein_coding			apoptosis inhibitory protein;(source:Araport11)
AT1G08270.2	protein_coding			vacuolar protein sorting-associated protein;(source:Araport11)
AT1G68020.2	protein_coding	UDP-Glycosyltransferase / trehalose-phosphatase family protein	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain and a trehalose phosphatase (TPP)-like domain. It can complement a yeast mutant lacking both of these activities suggesting that this is a bifunctional enzyme.	UDP-Glycosyltransferase / trehalose-phosphatase family protein;(source:Araport11)
AT1G67900.2	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G67980.2	protein_coding	caffeoyl-CoA 3-O-methyltransferase	Encodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase. Methyltransferase in the lignin biosynthetic pathway.	caffeoyl-CoA 3-O-methyltransferase;(source:Araport11)
AT1G65120.2	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT1G65150.2	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT1G39513.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-36 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G39511.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.4e-219 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G15920.2	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Deadenylase.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G16060.2	protein_coding	ARIA-interacting double AP2 domain protein	Encodes ADAP, an AP2-domain protein that interacts with ARIA.  ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.	ARIA-interacting double AP2 domain protein;(source:Araport11)
AT1G26665.2	protein_coding	Mediator complex, subunit Med10		Mediator complex, subunit Med10;(source:Araport11)
AT1G26798.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G26799.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G61640.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G01070.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	Encodes a plasma membrane-localized amino acid transporter likely involved in amino acid export in the developing seed.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G05450.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G23060.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G68550.2	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G66330.2	protein_coding	senescence-associated family protein		senescence-associated family protein;(source:Araport11)
AT1G08450.2	protein_coding	calreticulin 3	Encodes one of three Arabidopsis calreticulins.   In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the  presence of elf18, and EFR accumulation and signalling.	calreticulin 3;(source:Araport11)
AT1G11270.2	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G11270.3	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G11170.2	protein_coding	Protein of unknown function (DUF707)		lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT1G19180.2	protein_coding	jasmonate-zim-domain protein 1	JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably  by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. The mRNA is cell-to-cell mobile.	jasmonate-zim-domain protein 1;(source:Araport11)
AT1G06390.2	protein_coding	GSK3/SHAGGY-like protein kinase 1	encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl, suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.	GSK3/SHAGGY-like protein kinase 1;(source:Araport11)
AT1G47740.2	protein_coding	PPPDE putative thiol peptidase family protein		PPPDE putative thiol peptidase family protein;(source:Araport11)
AT1G30130.2	protein_coding			DUF1365 family protein;(source:Araport11)
AT1G45249.1	protein_coding	abscisic acid responsive elements-binding factor 2	Leucine zipper transcription factor that binds to the abscisic acid (ABA)–responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus.  Expressed constitutively in roots,  leaf vascular tissues, and hydathodes or  in all tissues under stress conditions. It's phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment.	abscisic acid responsive elements-binding factor 2;(source:Araport11)
AT1G45231.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a trimethylguanosine synthase that is required for chilling tolerance. tgs1 mutant have a striking chilling sensitive phenotype in which leaf and flower development are dramatically disrupted after long-term chilling treatment.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G45233.2	protein_coding	THO complex,  subunit 5	Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	THO complex, subunit 5;(source:Araport11)
AT1G45248.2	protein_coding	Nucleolar histone methyltransferase-related protein		Nucleolar histone methyltransferase-related protein;(source:Araport11)
AT1G45207.2	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT1G45201.1	protein_coding	triacylglycerol lipase-like 1	Target of AtGRP7 regulation.	triacylglycerol lipase-like 1;(source:Araport11)
AT1G45191.2	protein_coding	Glycosyl hydrolase superfamily protein	beta-glucosidase related protein, similar to beta-glucosidase GI:3820531 from (Pinus contorta); contains Pfam profile: PF00232 Glycosyl hydrolase family 1	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G45256.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.7e-06 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT1G59580.2	protein_coding	mitogen-activated protein kinase homolog 2	encodes a mitogen-activated kinase involved in innate immunity The mRNA is cell-to-cell mobile.	mitogen-activated protein kinase homolog 2;(source:Araport11)
AT1G78620.2	protein_coding	Protein of unknown function DUF92, transmembrane		integral membrane protein (Protein of unknown function DUF92, transmembrane);(source:Araport11)
AT1G78660.3	protein_coding	gamma-glutamyl hydrolase 1	The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.	gamma-glutamyl hydrolase 1;(source:Araport11)
AT1G37036.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 6.6e-26 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota);(source:TAIR10)
AT1G37012.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 1.7e-43 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10)
AT1G37038.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);hAT-like transposase family (hobo/Ac/Tam3), has a 5.1e-87 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana);(source:TAIR10)
AT1G77770.2	protein_coding	Protein of unknown function (DUF1644)		forkhead box protein, putative (DUF1644);(source:Araport11)
AT1G36770.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.3e-41 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G53450.2	protein_coding			epstein-barr nuclear antigen;(source:Araport11)
AT1G62610.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G41798.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 4.3e-88 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10)
AT1G41827.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 2.2e-11 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii);(source:TAIR10)
AT1G76040.2	protein_coding	calcium-dependent protein kinase 29	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 29;(source:Araport11)
AT1G76050.2	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT1G75880.2	protein_coding	SGNH hydrolase-type esterase superfamily protein		SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT1G55535.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G55475.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G14570.2	protein_coding	UBX domain-containing protein	Encodes a nuclear UBX-containing protein that can bridge ubiquitin to AtCDC48A.	UBX domain-containing protein;(source:Araport11)
AT1G77580.2	protein_coding	Plant protein of unknown function (DUF869)		filament-like protein (DUF869);(source:Araport11)
AT1G02190.2	protein_coding	Fatty acid hydroxylase superfamily		Fatty acid hydroxylase superfamily;(source:Araport11)
AT1G08000.2	protein_coding	GATA transcription factor 10	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 10;(source:Araport11)
AT1G07960.3	protein_coding	PDI-like 5-1	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.	PDI-like 5-1;(source:Araport11)
AT1G07960.2	protein_coding	PDI-like 5-1	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.	PDI-like 5-1;(source:Araport11)
AT1G07985.1	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT1G08125.1	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G56045.1	protein_coding	Ribosomal protein L41 family		Ribosomal protein L41 family;(source:Araport11)
AT1G13270.2	protein_coding	methionine aminopeptidase 1B	Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C.	methionine aminopeptidase 1B;(source:Araport11)
AT1G05085.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G02090.3	protein_coding	Proteasome component (PCI) domain protein	encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.	Proteasome component (PCI) domain protein;(source:Araport11)
AT1G02065.2	protein_coding	squamosa promoter binding protein-like 8	Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation.	squamosa promoter binding protein-like 8;(source:Araport11)
AT1G02100.3	protein_coding	Leucine carboxyl methyltransferase		Leucine carboxyl methyltransferase;(source:Araport11)
AT1G02100.2	protein_coding	Leucine carboxyl methyltransferase		Leucine carboxyl methyltransferase;(source:Araport11)
AT1G02020.2	protein_coding	nitroreductase family protein		nitroreductase family protein;(source:Araport11)
AT1G27040.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G60987.1	protein_coding	SCR-like 5	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 5;(source:Araport11)
AT1G65390.2	protein_coding	phloem protein 2 A5	Phloem Protein2 family gene encoding a two-domain protein containing predicted lectin and Toll/Interleukin-1 receptor domains, which is induced upon spider mite attack and improves the ability to defend against T. urticae by participating in the tight regulation of hormonal cross talk upon mite feeding.	phloem protein 2 A5;(source:Araport11)
AT1G65270.3	protein_coding			ER membrane protein complex subunit-like protein;(source:Araport11)
AT1G65347.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.5e-50 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea);(source:TAIR10)
AT1G79450.2	protein_coding	ALA-interacting subunit 5		ALA-interacting subunit 5;(source:Araport11)
AT1G79510.2	protein_coding	Uncharacterized conserved protein (DUF2358)		hypothetical protein (DUF2358);(source:Araport11)
AT1G79500.3	protein_coding	Aldolase-type TIM barrel family protein	Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT1G57680.2	protein_coding			plasminogen activator inhibitor;(source:Araport11)
AT1G57610.2	protein_coding	Protein of unknown function (DUF607)		calcium uniporter (DUF607);(source:Araport11)
AT1G35340.3	protein_coding	ATP-dependent protease La (LON) domain protein		ATP-dependent protease La (LON) domain protein;(source:Araport11)
AT1G73390.2	protein_coding	Endosomal targeting BRO1-like domain-containing protein		Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT1G73390.3	protein_coding	Endosomal targeting BRO1-like domain-containing protein		Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT1G79245.1	pseudogene			pseudogene of Winged helix-turn-helix transcription repressor DNA-binding protein;(source:Araport11)
AT1G79110.2	protein_coding	zinc ion binding	Encodes one of the BRGs (BOI-related gene) involved in resistance to Botrytis cinerea.	zinc ion binding protein;(source:Araport11)
AT1G05300.2	protein_coding	zinc transporter 5 precursor	member of Fe(II) transporter isolog family	zinc transporter 5 precursor;(source:Araport11)
AT1G05180.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses.  Acts alongside AS1 to exclude BP expression from leaves. Promotes degradation of the cytokinin response repressor ARR5.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
CAS1	unknown		Mutant displays elevated levels of allene oxide synthase (AOS) mRNA, AOS polypeptide, 12-oxophytodienoic acid, and jasmonic acid (JA), as well as constitutive expression of JA-responsive genes ( VSP2, PDF1.2). The gene maps to chromosome IV next to the SSLP marker CIW7.	
LSR1	unknown		Genetic locus that affects response to light stress.  Maps between markers T27K12 and nga280 on chromosome 1.	
PHO2	unknown		Mutants at this genetic locus are constitutively photomorphogenic.	
PIP3	unknown			
RPB1	unknown		A genetic locus that confers resistant to Plasmodiophora brassicae (a eukaryote that causes clubfoot) via hypersensitive response. The resistance allele for isolate e is found only in Arabidopsis accessions Tsu-0 and Ze-0.	
AT2G07778.1	pre_trna	pre-tRNA		tRNA-Ile (anticodon: AAT)
AT2G07793.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
AT2G07794.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: CAT);(source:Araport11, TAIR10)
AT2G07792.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT4G26365.1	small_nucleolar_rna	snoRNA		snoRNA;(source:Araport11)
AT5G66535.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT5G66568.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ile (anticodon: AAT);(source:Araport11, TAIR10)
AT5G65535.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: CCT);(source:Araport11, TAIR10)
AT5G65615.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
AT5G67455.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
AT5G61835.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT5G63145.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Thr (anticodon: TGT);(source:Araport11, TAIR10)
AT5G65445.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
AT5G65305.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Met (anticodon: CAT);(source:Araport11, TAIR10)
AT5G66755.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
AT5G66817.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
AT5G64735.1	pre_trna	pre-tRNA		pre-tRNA tRNA-His (anticodon: GTG);(source:Araport11, TAIR10)
AT5G65015.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Arg (anticodon: ACG);(source:Araport11, TAIR10)
AT5G64855.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Leu (anticodon: AAG);(source:Araport11, TAIR10)
AT5G64505.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Val (anticodon: AAC);(source:Araport11, TAIR10)
AT1G45238.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G45234.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G45246.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G45244.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G45242.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
AT1G45236.1	pre_trna	pre-tRNA		tRNA-Leu (anticodon: AAG)
AT1G45240.1	pre_trna	pre-tRNA		pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
RCH1	unknown		RCH1, a locus in Arabidopsis that confers resistance to the hemibiotrophic fungal pathogen Colletotrichum higginsianum.	
LWR1	unknown		unmapped mutant affected in low-water-potential response	
LWR2	unknown		unmapped mutant affected in low-water-potential response	
SSB1	unknown		Genetic locus involved in symptom development by response to Spring beauty latent virus(SBLV) infection.	
FSU2	unknown			
AIP7	protein_coding		AHP1-interacting protein	
CIR1	unknown		regulator of disease resistance. Mapped approximately 9.4 cM below nga111 on the lower arm of chromosome 4. Not allelic to cpr1.	
DCT1	protein_coding		mitochondrial dicarboxylate transporter	
DQ1	protein_coding		possibly involved in cell division	
EAD1	protein_coding		ethylene and auxin defects1	
EF20	protein_coding		ELF4-interacting protein, EARLY FLOWERING 20	
FL51	protein_coding		possibly required for mRNA splicing of genes involved in the formation and growth of primordia of sepals and petals	
GLYB1	protein_coding		a bZIP transcription factor	
GLYB2	protein_coding		a bZIP transcription factor	
HSR5	protein_coding		High Sugar Response Mutant 5. Part of a SCF complex that is regulated by SnRKs and PRL1	
IBR1	protein_coding		Increased Botrytis Resistance	
KRT171	protein_coding		putative acyltransferase	
LRF4	protein_coding		Leucine-rich Repeat F-box 4	
LRF5	protein_coding		Leucine-rich Repeat F-box 5	
NAC5	protein_coding		involved in different aspects of plant development and hormone signal transduction	
RIN12	protein_coding		RPM1-Interacting Protein 12	
SCA4	protein_coding		scabra 4	
SCA5	protein_coding		scabra 5	
SLW1	protein_coding		female gametophyte development	
SPR3	protein_coding		spiral 3	
TF55	protein_coding		putative Zn- and RING-finger containing transcription factor	
UGF1	protein_coding		UGF genes participate in several developmental processes, including meristem maintenance and shoot branching	
UGF2	protein_coding		UGF genes participate in several developmental processes, including meristem maintenance and shoot branching	
UGF3	protein_coding		UGF genes participate in several developmental processes, including meristem maintenance and shoot branching	
UGF4	protein_coding		UGF genes participate in several developmental processes, including meristem maintenance and shoot branching	
WAKL14	protein_coding		wall-associated kinase like	
BOS2	unknown		Genetic locus involved in the susceptibility to Botrytis infection. Mapping analysis shows a 22% recombination frequency between bos2 and the marker TGSSLP1 on chromosome 4.  It maps to a novel locus with no  previously described genes implicated in disease resistance.	
BOS3	unknown		Genetic locus involved in the susceptibility to Botrytis infection.  The BOS3 locus maps to  the lower arm of chromosome 1 with a recombination frequency of 3.5% with  marker AthS0392.  This region contains cpr6,  RPP7, and CAR1 and a cluster of seven resistance genes.	
BOS4	unknown		Genetic locus involved in the susceptibility to Botrytis infection. Currently being mapped.  Based on the mutant phenotypes it is unlikely that bos4 is allelic to the other bos mutants.	
SRFR3	unknown		negative regulator of avrRps4-triggered gene-for-gene disease resistance. Maps to the bottom of chromosome 4.	
CTG156	unknown		Mutant has a transparent testa phenotype but is not allelic to any of the publicly available tt lines (tt1 through tt10).	
RMP1	unknown			
GSR1	unknown		A genetic locus that is involved in regulating nitrogen partitioning.  Maps to chromosome 5 between CA72 and nga106.	
GLZ2	unknown		Genetic locus involved in normal glucose response.  Mapped to chromosome 1, about 3.9 cM distal to a simple sequence length polymorphism (SSLP) marker, nga111.  Not allelic to GIN1.	
ATE1	unknown		Genetic locus responsible for the repression of transdifferentiation into xylem cells. Transdifferentiation is the ability of many differentiated plant organs, tissues, and cells to regenerate all parts of the plant body.  Maps to chromosome 1 between nga280 and nga111.	
ATE2	unknown		Genetic locus responsible for the repression of transdifferentiation into xylem cells.  Transdifferentiation is the ability of many differentiated plant organs, tissues, and cells to regenerate all parts of the plant body.  Maps to chromosome 5 between nga151 and nga139.	
ATE3	unknown		Genetic locus responsible for the repression of transdifferentiation into xylem cells. Transdifferentiation is the ability of many differentiated plant organs, tissues, and cells to regenerate all parts of the plant body.  Maps to chromosome 3, the northern part of nga126.	
mcp2b	protein_coding			
QRP2	unknown		QTL involved in resistance to the necrotrophic fungus Plectosphaerella cucumerina.	
QRP3	unknown		QTL involved in resistance to the necrotrophic fungus Plectosphaerella cucumerina.	
RFO4	unknown		Genetic locus involved in resistance to Fusarium oxysporum.	
RFO6	unknown		Genetic locus involved in resistance to Fusarium oxysporum.	
JOE1	unknown		Genetic locus involved in jasmonate signalling.  Mapped to a 12 cM interval on chromosome 4 to which no mutants with JA-related phenotypes have been mapped.	
JOE2	unknown		Genetic locus involved in jasmonate signalling.  Maps to the same region on chromosome 5 as cev1.  May or may not be allelic to cev1.	
JUE1	unknown		Genetic locus involved in jasmonate signalling.	
JUE2	unknown		Genetic locus involved in jasmonate signalling.	
AHAP2	unknown			
AHAP5	unknown			
AIK2	unknown			
BAF1	unknown			
BAK2	unknown			
BAK3	unknown			
BAK4	unknown			
BAK5	unknown			
BAR1	unknown			
BCM1	unknown			
M-CHY2	unknown			
CW84	unknown			
DHR2	unknown			
ENS1	unknown			
FBA1	unknown			
FBA2	unknown			
FBA3	unknown			
FD5	unknown			
GWD3	unknown			
HOS6	unknown			
ITB3	unknown		A member of itb family that controls trichome morphogenesis. Mutations have a minor effect in trichome branch number, but a large effect on trichome branch and stalk expansion.	
LAP1	unknown			
LAP3	unknown			
LID3	unknown			
LIR1	unknown			
MMS4	unknown			
NIL189	unknown			
ON1	unknown			
ORE12	unknown			
PIK1	unknown			
PSOF21	unknown			
RDM1	unknown			
RPD2	unknown			
RPI11	unknown			
RPI4	unknown			
RPI6	unknown			
RRP4	unknown			
RSTK1	unknown			
SAP130	unknown			
SAUR50	unknown			
SGK1	unknown			
SOR3	unknown			
TYBP55	unknown			
WAV3	unknown		Genetic locus involved in hydrotropism.	
WDL4	unknown			
WDL6	unknown			
WDL7	unknown			
WG335	unknown			
WRKY06	unknown			
WUT1	unknown			
AT1G08550.2	protein_coding	non-photochemical quenching 1	Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex	non-photochemical quenching 1;(source:Araport11)
AT1G64810.2	protein_coding	Arabidopsis thaliana protein of unknown function (DUF794)	Encodes a chloroplast localized RNA binding protein that is involved in group II intron splicing.  Splicing defects can account for the loss of photosynthetic complexes in apo1 mutants.	APO RNA-binding protein (DUF794);(source:Araport11)
AT1G64770.2	protein_coding	NDH-dependent cyclic electron flow 1	encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.	NDH-dependent cyclic electron flow 1;(source:Araport11)
AT1G64760.2	protein_coding	O-Glycosyl hydrolases family 17 protein	ZERZAUST is an atypical  &#946;-1,3 glucanase. The protein is localized to punctate regions of the apoplast, near cellular junctions. Mutants in Ler background display aberrant floral morphology and twisted  siliques and stems. Biochemcial analysis of mutant cell wall composition indicates cell wall defects. However, in Col background, there is no phenotype due to compensatory effect of ZETH gene expression.	O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT1G08680.3	protein_coding	ARF GAP-like zinc finger-containing protein ZIGA4	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.	ARF GAP-like zinc finger-containing protein ZIGA4;(source:Araport11)
AT1G08630.4	protein_coding	threonine aldolase 1	Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.	threonine aldolase 1;(source:Araport11)
AT1G08320.2	protein_coding	bZIP transcription factor family protein		bZIP transcription factor family protein;(source:Araport11)
AT1G08320.3	protein_coding	bZIP transcription factor family protein		bZIP transcription factor family protein;(source:Araport11)
AT1G09060.3	protein_coding	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase	JMJ24 is a nuclear localized JmjC domain containing protein. It has been shown to bind to transcribed regions AtSN1 and solo LTR and the promoter of SDC. JMJ24 appears to regulate basal levels of transcription of silenced loci in part by controlling methylation in heterochromatic regions.	JmjC domain protein JMJ24;(source:Araport11)
AT1G31300.2	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G25275.3	protein_coding		Thionin-like gene involved in resistance against the beet cyst nematode (Heterodera schachtii).	thionin-like protein;(source:Araport11)
AT1G25275.2	protein_coding		Thionin-like gene involved in resistance against the beet cyst nematode (Heterodera schachtii).	thionin-like protein;(source:Araport11)
AT1G08820.2	protein_coding	vamp/synaptobrevin-associated protein 27-2	Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.	vamp/synaptobrevin-associated protein 27-2;(source:Araport11)
AT1G64990.2	protein_coding	GPCR-type G protein 1	Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG1 binds to GPA1, the alpha subunit of the heterotrimeric G protein.  GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG1 and may act to down-regulate GTG1 binding to ABA. GTG1 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG1 transcript levels do not appear to change in response to ABA or abiotic stresses.	GPCR-type G protein 1;(source:Araport11)
AT1G36310.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G08930.2	protein_coding	Major facilitator superfamily protein	encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold. The mRNA is cell-to-cell mobile.	Major facilitator superfamily protein;(source:Araport11)
AT1G08920.3	protein_coding	ERD (early response to dehydration) six-like 1	Encodes ESL1, a transporter for monosaccharides.	ERD (early response to dehydration) six-like 1;(source:Araport11)
AT1G51745.2	protein_coding	Tudor/PWWP/MBT superfamily protein		Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT1G18250.2	protein_coding	Pathogenesis-related thaumatin superfamily protein	encodes a thaumatin-like protein	Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT1G51590.2	protein_coding	alpha-mannosidase 1	Encodes an alpha-mannosidase I enzyme responsible for N-glycan maturation.	alpha-mannosidase 1;(source:Araport11)
AT1G01920.2	protein_coding	SET domain-containing protein		SET domain-containing protein;(source:Araport11)
AT1G01910.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G69526.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G18840.2	protein_coding	IQ-domain 30	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 30;(source:Araport11)
AT1G13450.2	protein_coding	Homeodomain-like superfamily protein	Encodes GT-1, a plant transcription factor that binds to one of the cis-acting elements, BoxII, which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G45230.2	protein_coding	Protein of unknown function (DUF3223)		DCL protein (DUF3223);(source:Araport11)
AT1G18700.2	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G13580.2	protein_coding	LAG1 longevity assurance homolog 3	Encodes a ceramide synthase that together with LOH1 is essential for production of ceramides containing Very Long Chain Fatty acid VLCFA-Ceramides(mainly C 22 to 26).	LAG1 longevity assurance-like protein;(source:Araport11)
AT1G18750.2	protein_coding	AGAMOUS-like 65	Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.	AGAMOUS-like 65;(source:Araport11)
AT1G13610.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G70580.3	protein_coding	alanine-2-oxoglutarate aminotransferase 2	Encodes a protein with glyoxylate aminotransferase activity. It can act on a number of different small substrates and amino acids in vitro.	alanine-2-oxoglutarate aminotransferase 2;(source:Araport11)
AT1G70580.4	protein_coding	alanine-2-oxoglutarate aminotransferase 2	Encodes a protein with glyoxylate aminotransferase activity. It can act on a number of different small substrates and amino acids in vitro.	alanine-2-oxoglutarate aminotransferase 2;(source:Araport11)
AT1G70480.2	protein_coding	Domain of unknown function (DUF220)	Protein residing in the chloroplast outer membrane, has channel-like properties facilitating the export of the jasmonate precursor 12-oxophytodienoic acid (OPDA) from the chloroplast.	OBP32pep, putative (DUF220);(source:Araport11)
AT1G09130.2	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT1G09140.2	protein_coding	SERINE-ARGININE PROTEIN 30	Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Under dark conditions, the variant AT1G09140.2 is produced and accumulates in the nucleus.Exists as 3 alternative spliced forms that are differentially expressed. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SERINE-ARGININE PROTEIN 30;(source:Araport11)
AT1G14380.3	protein_coding	IQ-domain 28	Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 28;(source:Araport11)
AT1G70400.2	protein_coding			NOSIC domain protein;(source:Araport11)
AT1G19660.2	protein_coding	Wound-responsive family protein		Wound-responsive family protein;(source:Araport11)
AT1G65700.2	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT1G09500.3	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G70700.2	protein_coding	TIFY domain/Divergent CCT motif family protein	JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. The mRNA is cell-to-cell mobile.	TIFY domain/Divergent CCT motif family protein;(source:Araport11)
AT1G09270.3	protein_coding	importin alpha isoform 4	Protein interacts with Agrobacterium proteins VirD2 and VirE2.	importin alpha isoform 4;(source:Araport11)
AT1G70850.3	protein_coding	MLP-like protein 34		MLP-like protein 34;(source:Araport11)
AT1G02630.2	protein_coding	Nucleoside transporter family protein		Nucleoside transporter family protein;(source:Araport11)
AT1G52220.2	protein_coding			CURVATURE THYLAKOID protein;(source:Araport11)
AT1G52510.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52370.2	protein_coding	Ribosomal protein L22p/L17e family protein		Ribosomal protein L22p/L17e family protein;(source:Araport11)
AT1G26260.3	protein_coding	cryptochrome-interacting basic-helix-loop-helix 5	Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix).  Related to CIB1 (AT4G34530).  CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.	cryptochrome-interacting basic-helix-loop-helix 5;(source:Araport11)
AT1G52400.2	protein_coding	beta glucosidase 18	encodes a member of glycosyl hydrolase family 1, located in inducible ER bodies which were formed after wounding, required in inducible ER body formation The mRNA is cell-to-cell mobile.	beta glucosidase 18;(source:Araport11)
AT1G58110.2	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT1G31550.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G25340.2	protein_coding	myb domain protein 116	putative transcription factor (MYB116)	myb domain protein 116;(source:Araport11)
AT1G58180.3	protein_coding	beta carbonic anhydrase 6		beta carbonic anhydrase 6;(source:Araport11)
AT1G14240.3	protein_coding	GDA1/CD39 nucleoside phosphatase family protein		GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11)
AT1G14170.2	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT1G26440.4	protein_coding	ureide permease 5	encodes a ureide permease, uptake assays in yeast mutants indicated the longer splice variant is a cellular importer for allantoin, uracil and xanthine	ureide permease 5;(source:Araport11)
AT1G01650.2	protein_coding	SIGNAL PEPTIDE PEPTIDASE-LIKE 4		SIGNAL PEPTIDE PEPTIDASE-LIKE 4;(source:Araport11)
AT1G63260.3	protein_coding	tetraspanin10	Member of TETRASPANIN family	tetraspanin10;(source:Araport11)
AT1G29470.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G06700.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G12520.3	protein_coding	copper chaperone for SOD1	Copper-zinc superoxide dismutase copper chaperone (delivers copper to the Cu-Zn superoxide dismutase). Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments.  Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.	copper chaperone for SOD1;(source:Araport11)
AT1G12520.2	protein_coding	copper chaperone for SOD1	Copper-zinc superoxide dismutase copper chaperone (delivers copper to the Cu-Zn superoxide dismutase). Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments.  Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.	copper chaperone for SOD1;(source:Araport11)
AT1G06850.2	protein_coding	basic leucine-zipper 52		basic leucine-zipper 52;(source:Araport11)
AT1G35580.3	protein_coding	cytosolic invertase 1	CINV1 / A/N-InvG is an alkaline/neutral invertase that breaks sucrose down into fructose and glucose (GH100). The exact localization of CINV1 remains under investigation but there is evidence that fluorescently-tagged CINV1 localizes to the cytoplasm. atinvg mutants have reduced root growth, reduced invertase activity, and increased expression of antioxidant genes under basal conditions. The levels of CINV1 / A/N-InvG transcripts rise in response to a hydrogen peroxide treatment. The protein has been shown to interact with PIP5K9.	cytosolic invertase 1;(source:Araport11)
AT1G79820.3	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G29890.2	protein_coding	O-acetyltransferase family protein	Encodes a homolog of the protein Cas1p known to be involved in polysaccharide O-acetylation in Cryptococcus neoformans. Has high similarity to RWA2 whose mutant displays reduced acetylation. The protein is expressed in the Golgi and is involved in the acetylation of xylan during secondary wall biosynthesis.	O-acetyltransferase family protein;(source:Araport11)
AT1G56610.2	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT1G79940.2	protein_coding	DnaJ / Sec63 Brl domains-containing protein	J domain protein localized in ER membrane. Mutants have defective pollen germination.	DnaJ / Sec63 Brl domains-containing protein;(source:Araport11)
AT1G57720.2	protein_coding	Translation elongation factor EF1B, gamma chain		Translation elongation factor EF1B, gamma chain;(source:Araport11)
AT1G23480.3	protein_coding	cellulose synthase-like A3	encodes a gene similar to cellulose synthase	cellulose synthase-like A3;(source:Araport11)
AT1G30040.2	protein_coding	gibberellin 2-oxidase	Encodes a gibberellin 2-oxidase that acts on C-19 gibberellins. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.	gibberellin 2-oxidase;(source:Araport11)
AT1G79910.2	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT1G79930.2	protein_coding	heat shock protein 91	encodes high molecular weight heat shock protein 70 not a HSP90 homolog, mRNA is constitutively expressed but transiently induced after heat shock	heat shock protein 91;(source:Araport11)
AT1G56340.2	protein_coding	calreticulin 1a	Encodes one of three Arabidopsis calreticulins.   In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels. Post-transcriptionally regulates together with CRT2 VAMP721/722 levels under ER stress.	calreticulin 1a;(source:Araport11)
AT1G07280.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G07320.3	protein_coding	ribosomal protein L4	encodes a plastid ribosomal protein L4	ribosomal protein L4;(source:Araport11)
AT1G07320.4	protein_coding	ribosomal protein L4	encodes a plastid ribosomal protein L4	ribosomal protein L4;(source:Araport11)
AT1G29800.2	protein_coding	RING/FYVE/PHD-type zinc finger family protein		RING/FYVE/PHD-type zinc finger family protein;(source:Araport11)
AT1G23310.2	protein_coding	glutamate:glyoxylate aminotransferase	Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.	glutamate:glyoxylate aminotransferase;(source:Araport11)
AT1G11790.2	protein_coding	arogenate dehydratase 1	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis.  Not less than six genes encoding ADT were identi&#64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	arogenate dehydratase 1;(source:Araport11)
AT1G18070.2	protein_coding	Translation elongation factor EF1A/initiation factor IF2gamma family protein		Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT1G50570.2	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G43170.3	protein_coding	ribosomal protein 1	Encodes a cytoplasmic ribosomal protein. The mRNA is cell-to-cell mobile.	ribosomal protein 1;(source:Araport11)
AT1G11840.5	protein_coding	glyoxalase I homolog	Encodes Ni+ dependent glyoxalase I homolog ATGLX1.	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein;(source:Araport11)
AT1G11840.4	protein_coding	glyoxalase I homolog	Encodes Ni+ dependent glyoxalase I homolog ATGLX1.	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein;(source:Araport11)
AT1G17745.2	protein_coding	D-3-phosphoglycerate dehydrogenase	encodes a 3-Phosphoglycerate dehydrogenase The mRNA is cell-to-cell mobile.	D-3-phosphoglycerate dehydrogenase;(source:Araport11)
AT1G17990.2	protein_coding	FMN-linked oxidoreductases superfamily protein		FMN-linked oxidoreductases superfamily protein;(source:Araport11)
AT1G43020.2	protein_coding	Protein of unknown function, DUF547		electron protein, putative (Protein of unknown function, DUF547);(source:Araport11)
AT1G74140.2	protein_coding	Rhomboid-related intramembrane serine protease family protein		Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT1G06500.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G68410.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G68240.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G68140.2	protein_coding	Protein of unknown function (DUF1644)		zinc finger/BTB domain protein, putative (DUF1644);(source:Araport11)
AT1G07940.2	protein_coding	GTP binding Elongation factor Tu family protein		GTP binding Elongation factor Tu family protein;(source:Araport11)
AT1G07890.5	protein_coding	ascorbate peroxidase 1	Encodes a cytosolic ascorbate peroxidase APX1.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. The mRNA is cell-to-cell mobile.	ascorbate peroxidase 1;(source:Araport11)
AT1G07890.4	protein_coding	ascorbate peroxidase 1	Encodes a cytosolic ascorbate peroxidase APX1.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. The mRNA is cell-to-cell mobile.	ascorbate peroxidase 1;(source:Araport11)
AT1G07880.2	protein_coding	Protein kinase superfamily protein	member of MAP Kinase	Protein kinase superfamily protein;(source:Araport11)
AT1G07840.3	protein_coding	Sas10/Utp3/C1D family		Sas10/Utp3/C1D family;(source:Araport11)
AT1G30160.2	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT1G64300.2	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT1G08110.4	protein_coding	lactoylglutathione lyase family protein / glyoxalase I family protein	Encodes a Zn2+ dependent glyoxylase.	lactoylglutathione lyase family protein / glyoxalase I family protein;(source:Araport11)
AT1G08110.3	protein_coding	lactoylglutathione lyase family protein / glyoxalase I family protein	Encodes a Zn2+ dependent glyoxylase.	lactoylglutathione lyase family protein / glyoxalase I family protein;(source:Araport11)
AT1G64355.2	protein_coding			1-acyl-sn-glycerol-3-phosphate acyltransferase;(source:Araport11)
AT1G30400.2	protein_coding	multidrug resistance-associated protein 1	glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. An ABCC-type arsenite-phytochelatin transporter. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.	multidrug resistance-associated protein 1;(source:Araport11)
AT1G08040.2	protein_coding	Protein of unknown function (DUF707)		trimethylguanosine synthase (DUF707);(source:Araport11)
AT1G64230.2	protein_coding	ubiquitin-conjugating enzyme 28		ubiquitin-conjugating enzyme 28;(source:Araport11)
AT1G30330.2	protein_coding	auxin response factor 6	Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.	auxin response factor 6;(source:Araport11)
AT1G13320.2	protein_coding	protein phosphatase 2A  subunit A3	one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)	protein phosphatase 2A subunit A3;(source:Araport11)
AT1G07640.3	protein_coding	Dof-type zinc finger DNA-binding family protein	A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis. PEAR protein involved in the formation of a short-range concentration gradient that peaks at protophloem sieve elements, and activates gene expression that promotes radial growth. Locally promotes transcription of inhibitory HD-ZIP III genes, and thereby establishes a negative-feedback loop that forms a robust boundary that demarks the zone of cell division.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT1G63980.2	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT1G01370.2	protein_coding	Histone superfamily protein	Encodes a centromere-identifying  protein histone H3 variant. Localized at centromeres in both mitotic and  meiotic cells. Aurora3 phosphorylates CENH3 at S65; this post-translational modification is required for the proper development of the floral meristem.	Histone superfamily protein;(source:Araport11)
AT1G01490.2	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G24267.2	protein_coding	Protein of unknown function (DUF1664)		bZIP transcription factor, putative (DUF1664);(source:Araport11)
AT1G01550.2	protein_coding	Protein of unknown function (DUF793)	Encodes a protein  with no functionally characterized domains that to prevent the synthesis of a novel substance that moves from the root to the shoot, where it modifies shoot growth by interfering with auxin signaling.  Synthesis and delivery of this substance requires neither phloem nor endodermis.	BPS1-like protein (DUF793);(source:Araport11)
AT1G01080.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G30620.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G01060.3	protein_coding	Homeodomain-like superfamily protein	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	Homeodomain-like superfamily protein;(source:Araport11)
AT1G64430.2	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G01020.2	protein_coding	Arv1-like protein		ARV1 family protein;(source:Araport11)
AT1G23950.4	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT1G23960.2	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT1G01170.2	protein_coding	Protein of unknown function (DUF1138)		ozone-responsive stress-like protein (DUF1138);(source:Araport11)
AT1G30690.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G80460.2	protein_coding	Actin-like ATPase superfamily protein	Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.	Actin-like ATPase superfamily protein;(source:Araport11)
AT1G51160.2	protein_coding	SNARE-like superfamily protein	TRAPP protein BET5 homolog.	SNARE-like superfamily protein;(source:Araport11)
AT1G74530.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G50630.2	protein_coding	Protein of unknown function (DUF3537)		extracellular ligand-gated ion channel protein (DUF3537);(source:Araport11)
AT1G68920.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G13000.2	protein_coding	Protein of unknown function (DUF707)		transmembrane protein, putative (DUF707);(source:Araport11)
AT1G44835.2	protein_coding	YbaK/aminoacyl-tRNA synthetase-associated domain		YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein;(source:Araport11)
AT1G44780.2	protein_coding			translation initiation factor;(source:Araport11)
AT1G44750.3	protein_coding	purine permease 11	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 11;(source:Araport11)
AT1G07440.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G75170.3	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G75170.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G12650.2	protein_coding			rRNA biogenesis RRP36-like protein;(source:Araport11)
AT1G12760.2	protein_coding	Zinc finger, C3HC4 type (RING finger) family protein		Zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT1G21600.2	protein_coding	plastid transcriptionally active 6	Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.	plastid transcriptionally active 6;(source:Araport11)
AT1G78150.2	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT1G27695.2	protein_coding	glycine-rich protein	TGD5 encodes a small glycine rich protein that is localized to the chloroplast envelope and is a component of the ER to plastid lipid trafficking pathway. TGD5 interacts with other components of this pathway including TGD1, TGD2, TGD3, and TGD4.	glycine-rich protein;(source:Araport11)
AT1G05410.2	protein_coding	Protein of unknown function (DUF1423)		CDPK adapter, putative (DUF1423);(source:Araport11)
AT1G55000.2	protein_coding	peptidoglycan-binding LysM domain-containing protein		peptidoglycan-binding LysM domain-containing protein;(source:Araport11)
AT1G55000.3	protein_coding	peptidoglycan-binding LysM domain-containing protein		peptidoglycan-binding LysM domain-containing protein;(source:Araport11)
AT1G27840.3	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G27840.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G55300.2	protein_coding	TBP-associated factor 7		TBP-associated factor 7;(source:Araport11)
AT1G55310.2	protein_coding	SC35-like splicing factor 33	Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SC35-like splicing factor 33;(source:Araport11)
AT1G49130.2	protein_coding	B-box type zinc finger protein with CCT domain	Regulated by heat shock.	B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT1G22200.2	protein_coding	Endoplasmic reticulum vesicle transporter protein		Endoplasmic reticulum vesicle transporter protein;(source:Araport11)
AT1G72990.2	protein_coding	beta-galactosidase 17		beta-galactosidase 17;(source:Araport11)
AT1G49300.2	protein_coding	RAB GTPase homolog  G3E	encodes a small GTPase involved in membrane trafficking. Gene expression is induced by hydrogen peroxide and lines. Lines overexpressing the gene are more tolerant to high salt and hyperosmotic conditions.	RAB GTPase homolog G3E;(source:Araport11)
AT1G16810.2	protein_coding			7-dehydrocholesterol reductase-like protein;(source:Araport11)
AT1G48850.2	protein_coding	chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative		chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase;(source:Araport11)
AT1G48850.3	protein_coding	chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative		chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase;(source:Araport11)
AT1G48980.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G72830.3	protein_coding	nuclear factor Y, subunit A3	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. Expression is upregulated in the shoot of cax1/cax3 mutant.	nuclear factor Y, subunit A3;(source:Araport11)
AT1G10390.2	protein_coding	Nucleoporin autopeptidase	DRA2 is a homolog of mammalian nucleoporin 98 and a likely component of the nuclear pore complex in Arabidopsis. It positively participates in the control of the hypocotyl elongation response to plant proximity and control of shade induced gene expression. Nucleoportin which redundantly inhibits flowering together with Nup98b through multiple pathways including clock, photoperiod, and age pathways. Gates flowering in a CONSTANS (CO)-independent mode and bypasses the CO checkpoint in photoperiodic signaling and integrated signals from multiple pathways to directly target FLOWERING LOCUS T (FT) for flowering control.	Nucleoporin autopeptidase;(source:Araport11)
AT1G10600.2	protein_coding	associated molecule with the SH3 domain of STAM 2		associated molecule with the SH3 domain of STAM 2;(source:Araport11)
AT1G04750.2	protein_coding	vesicle-associated membrane protein 721	Encodes vesicle-associated membrane protein 7B (VAMP7B, or VAMP721). Required for cell plate formation.VAMP721 interacts with KAT1 and KC1 K+ channels, affects channel gating and suppresses the K+ current within the physiological voltage range. Post-transcriptionally regulated by CRT1/2 under ER stress.	vesicle-associated membrane protein 721;(source:Araport11)
AT1G04640.2	protein_coding	lipoyltransferase 2	Lipoyltransferase, located in mitochondria but not found in chloroplasts	lipoyltransferase 2;(source:Araport11)
AT1G33700.2	protein_coding	Beta-glucosidase, GBA2 type family protein		Beta-glucosidase, GBA2 type family protein;(source:Araport11)
AT1G72660.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G72660.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G10040.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G72640.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G10070.3	protein_coding	branched-chain amino acid transaminase 2	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Involved in cell wall development.	branched-chain amino acid transaminase 2;(source:Araport11)
AT1G10070.2	protein_coding	branched-chain amino acid transaminase 2	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Involved in cell wall development.	branched-chain amino acid transaminase 2;(source:Araport11)
AT1G10210.2	protein_coding	mitogen-activated protein kinase 1	Encodes ATMPK1.	mitogen-activated protein kinase 1;(source:Araport11)
AT1G61520.2	protein_coding	photosystem I light harvesting complex gene 3	PSI type III chlorophyll a/b-binding protein (Lhca3*1) The mRNA is cell-to-cell mobile.	PSI type III chlorophyll a/b-binding protein;(source:Araport11)
AT1G05200.2	protein_coding	glutamate receptor 3.4	Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.	glutamate receptor 3.4;(source:Araport11)
AT1G05180.3	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses.  Acts alongside AS1 to exclude BP expression from leaves. Promotes degradation of the cytokinin response repressor ARR5.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G54630.2	protein_coding	acyl carrier protein 3	encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Gene expression is not regulated by light.	acyl carrier protein 3;(source:Araport11)
AT1G05320.2	protein_coding			myosin heavy chain, embryonic smooth protein;(source:Araport11)
AT1G05320.3	protein_coding			myosin heavy chain, embryonic smooth protein;(source:Araport11)
AT1G61180.2	protein_coding	LRR and NB-ARC domains-containing disease resistance protein		LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT1G33970.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	IAN9 is a member of a small family of proteins. It's expression is repressed upon pathogen infection and loss of function mutants show increased resistance to bacterial pathogens.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G33970.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	IAN9 is a member of a small family of proteins. It's expression is repressed upon pathogen infection and loss of function mutants show increased resistance to bacterial pathogens.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G04950.3	protein_coding	TATA BOX ASSOCIATED FACTOR II 59	Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.  Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced.  This is due to reduced pollen tube growth of the mutant.	TATA BOX ASSOCIATED FACTOR II 59;(source:Araport11)
AT1G28310.2	protein_coding	Dof-type zinc finger DNA-binding family protein		Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT1G05970.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Anti-silencing factor. Forms a complex with ASI1-EDM2 that is required for expression of some  nonintronic HC-TRE genes	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G62290.2	protein_coding	Saposin-like aspartyl protease family protein		Saposin-like aspartyl protease family protein;(source:Araport11)
AT1G67150.2	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT1G10940.2	protein_coding	Protein kinase superfamily protein	Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute.	Protein kinase superfamily protein;(source:Araport11)
AT1G73320.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G67590.2	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT1G05580.2	protein_coding	cation/H+ exchanger 23	member of Putative Na+/H+ antiporter family	cation/H+ exchanger 23;(source:Araport11)
AT1G34370.3	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity.  In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity. Cell wall of the mutant is unstable in low pH medium (pH 4.5) in low Ca solution. This would mediate Ca-alleviation of low pH stress through pectin-Ca interaction. In vitro binding and mutated-promoter-GUS assays identified that STOP1 directly activates AtALMT1 expression through the binding to the promoter by four zinc finger domains. Binding of STOP1 to promoter is an essential step of Al-inducible AtALMT1 expression. The mRNA is cell-to-cell mobile.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G67490.2	protein_coding	glucosidase 1	Encodes an alpha-glucosidase I enzyme that catalyzes the first step in N-linked glycan processing. Localized to the endoplasmic reticulum (ER).	glucosidase 1;(source:Araport11)
AT1G11400.3	protein_coding	partner of Y14-MAGO	The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.	partner of Y14-MAGO;(source:Araport11)
AT1G05630.2	protein_coding	Endonuclease/exonuclease/phosphatase family protein	Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3.  Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light–stimulated  increase in cytosolic calcium ion.	Endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT1G34170.2	protein_coding	AUXIN RESPONSE FACTOR 13		AUXIN RESPONSE FACTOR 13;(source:Araport11)
AT1G11280.4	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G76440.3	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G20160.2	protein_coding	Subtilisin-like serine endopeptidase family protein	SBT5.2(b) is localized to endosomes.It interacts with and tethers MYB30 in to the endosomes resulting in an attenuated defense response.This isoform lacks serine protease activity.N-terminal myristoylation in SBT5.2(b) determines its localization to endosomes and MYB30 nuclear exclusion.	Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT1G53650.2	protein_coding	CTC-interacting domain 8	RNA-binding protein, putative, similar to RNA-binding protein GB:AAA86641 GI:1174153 from (Arabidopsis thaliana).Contains PAB2 domain which facilitates binding to PABC proteins.	CTC-interacting domain 8;(source:Araport11)
AT1G48450.2	protein_coding	Protein of unknown function (DUF760)		alanine-tRNA ligase, putative (DUF760);(source:Araport11)
AT1G76280.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G53310.2	protein_coding	phosphoenolpyruvate carboxylase 1	Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.Plays an important role in carbon and nitrogen metabolism.	phosphoenolpyruvate carboxylase 1;(source:Araport11)
AT1G53310.3	protein_coding	phosphoenolpyruvate carboxylase 1	Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.Plays an important role in carbon and nitrogen metabolism.	phosphoenolpyruvate carboxylase 1;(source:Araport11)
AT1G19790.2	protein_coding	SHI-related sequence 7	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	SHI-related sequence 7;(source:Araport11)
AT1G53380.2	protein_coding	Plant protein of unknown function (DUF641)		hypothetical protein (DUF641);(source:Araport11)
AT1G76320.2	protein_coding	FAR1-related sequence 4		FAR1-related sequence 4;(source:Araport11)
AT1G53570.3	protein_coding	mitogen-activated protein kinase kinase kinase 3	Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK3 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens.	mitogen-activated protein kinase kinase kinase 3;(source:Araport11)
AT1G27370.3	protein_coding	squamosa promoter binding protein-like 10	In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.  SPL10 also controls lamina shape during vegetative development.	squamosa promoter binding protein-like 10;(source:Araport11)
AT1G48760.3	protein_coding	delta-adaptin	Encodes the putative delta subunit of the AP(adaptor protein)-3  complex and plays a role in vacuolar function.	delta-adaptin;(source:Araport11)
AT1G76990.4	protein_coding	ACT domain repeat 3		ACT domain repeat 3;(source:Araport11)
AT1G48490.2	protein_coding	Protein kinase superfamily protein	Protein kinase which together with IREH1 plays an important role in controlling root skewing and maintaining the microtubule network.	Protein kinase superfamily protein;(source:Araport11)
AT1G15215.3	protein_coding		Encodes SHH1, a homeodomain protein required for DNA methylation. It is an atypical RNA-directed DNA methylation component, and functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways.	SAWADEE HOMEODOMAIN protein;(source:Araport11)
AT1G15380.2	protein_coding	Lactoylglutathione lyase / glyoxalase I family protein	Glyoxalase which affects ABA?JA crosstalk.	Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT1G15750.3	protein_coding	Transducin family protein / WD-40 repeat family protein	Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus.  Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top help of the embryo during the transition stage of embryogenesis. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT1G15750.4	protein_coding	Transducin family protein / WD-40 repeat family protein	Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus.  Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top help of the embryo during the transition stage of embryogenesis.  The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT1G58848.2	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G66200.2	protein_coding	glutamine synthase clone F11	encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium	hypothetical protein;(source:Araport11)
AT1G02950.3	protein_coding	glutathione S-transferase F4	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase F4;(source:Araport11)
AT1G02960.3	protein_coding			kinetochore protein;(source:Araport11)
AT1G65980.2	protein_coding	thioredoxin-dependent peroxidase 1	thioredoxin-dependent peroxidase	thioredoxin-dependent peroxidase 1;(source:Araport11)
AT1G31870.2	protein_coding		Ortholog of yeast BUD13. Functions in pre mRNA processing of RNAs expressed in embryos.	pre-mRNA-splicing factor of RES complex protein;(source:Araport11)
AT1G09840.4	protein_coding	shaggy-like protein kinase 41		shaggy-like protein kinase 41;(source:Araport11)
AT1G03470.2	protein_coding	Kinase interacting (KIP1-like) family protein	Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the nuclear membrane and the vacuolar membrane.	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT1G53190.2	protein_coding	RING/U-box superfamily protein	Encodes a RING-type E3 ligase that positively regulates CIN-like TCP activity to promote leaf development by mediating the degradation of the TCP repressor TIE1.	RING/U-box superfamily protein;(source:Araport11)
AT1G32400.3	protein_coding	tobamovirus multiplication 2A	TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.	tobamovirus multiplication 2A;(source:Araport11)
AT1G03180.2	protein_coding			non-structural protein;(source:Araport11)
AT1G32370.4	protein_coding	tobamovirus multiplication 2B	Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta. The mRNA is cell-to-cell mobile.	tobamovirus multiplication 2B;(source:Araport11)
AT1G59750.3	protein_coding	auxin response factor 1	Encodes a member of the auxin response factor family. ARFs bind to the cis element 5'-TGTCTC-3' ARFs mediate changes in gene expression in response to auxin. ARF's form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence.ARF1:LUC and 3xHA:ARF1 proteins have a half-life of ~3-4 hours and their degradation is reduced by proteasome inhibitors. 3xHA:ARF1 degradation is not affected by a pre-treatment with IAA. A nuclear-targeted fusion protein containing the middle region of ARF1 linked to LUC:NLS has a similar half-life to the full-length ARF1:LUC construct. The degradation of 3xHA:ARF1 is not affected in an axr6-3 mutant grown at room temperature, although the degradation of AXR2/IAA7 is slowed under these conditions.	auxin response factor 1;(source:Araport11)
AT1G54385.2	protein_coding	ARM repeat superfamily protein	At1G54385 encodes the plant KASH protein SINE1; SINE1 interacts with SUN1 and SUN2, is colocalized with F-actin, and is localized at the nuclear envelope.	ARM repeat superfamily protein;(source:Araport11)
AT1G77290.2	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT1G77350.2	protein_coding			keratinocyte-associated-like protein;(source:Araport11)
AT1G54360.3	protein_coding	TBP-ASSOCIATED FACTOR 6B	Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.	TBP-ASSOCIATED FACTOR 6B;(source:Araport11)
AT1G54360.4	protein_coding	TBP-ASSOCIATED FACTOR 6B	Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.	TBP-ASSOCIATED FACTOR 6B;(source:Araport11)
AT1G77180.2	protein_coding	chromatin protein family	Encodes a putative transcriptional factor.  Shows transcriptional activator activity in yeast.  Involved in response to abscisic acid, salt and osmotic stress. SKIP lengthens period of the circadian clock by impairing the alternative splicing of PRR7 and PRR9. SKIP regulates the splicing of SEF pre-mRNA  and suppresses flowering by activation of FLC.	chromatin protein family;(source:Araport11)
AT1G77440.2	protein_coding	20S proteasome beta subunit C2	Encodes beta subunit of 20s proteosome complex which is involved in protein degradation.	20S proteasome beta subunit C2;(source:Araport11)
AT1G20620.5	protein_coding	catalase 3	Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. The mRNA is cell-to-cell mobile.	catalase 3;(source:Araport11)
AT1G20620.4	protein_coding	catalase 3	Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. The mRNA is cell-to-cell mobile.	catalase 3;(source:Araport11)
AT1G61010.3	protein_coding	cleavage and polyadenylation specificity factor 73-I		cleavage and polyadenylation specificity factor 73-I;(source:Araport11)
AT1G53890.2	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT1G53910.2	protein_coding	related to AP2 12	Encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. Involved in oxygen sensing. It plays a key role in controlling root bending in response to hypoxia.	related to AP2 12;(source:Araport11)
AT1G54220.2	protein_coding	Dihydrolipoamide acetyltransferase, long form protein	Encodes a subunit of the mitochondrial pyruvate dehydrogenase complex.	Dihydrolipoamide acetyltransferase, long form protein;(source:Araport11)
AT1G20693.2	protein_coding	high mobility group B2	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. The mRNA is cell-to-cell mobile.	high mobility group B2;(source:Araport11)
AT1G20696.2	protein_coding	high mobility group B3	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. The mRNA is cell-to-cell mobile.	high mobility group B3;(source:Araport11)
AT1G16470.2	protein_coding	proteasome subunit PAB1	Encodes 20S proteasome subunit PAB1 (PAB1).	proteasome subunit PAB1;(source:Araport11)
AT1G16460.3	protein_coding	rhodanese homologue 2	encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast.  Can also act as a mercaptopyruvate sulfurtransferase.	rhodanese homologue 2;(source:Araport11)
AT1G16705.2	protein_coding	p300/CBP acetyltransferase-related protein-related		p300/CBP acetyltransferase-related protein-like protein;(source:Araport11)
AT1G72370.2	protein_coding	40s ribosomal protein SA	acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.	40s ribosomal protein SA;(source:Araport11)
AT1G16560.4	protein_coding	Per1-like family protein		Per1-like family protein;(source:Araport11)
AT1G16340.2	protein_coding	Aldolase superfamily protein	Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).	Aldolase superfamily protein;(source:Araport11)
AT1G16070.2	protein_coding	tubby like protein 8	Member of TLP family	tubby like protein 8;(source:Araport11)
AT1G71860.3	protein_coding	protein tyrosine phosphatase 1	Encodes a protein with  tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.	protein tyrosine phosphatase 1;(source:Araport11)
AT1G77765.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G16240.2	protein_coding	syntaxin of plants 51	Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.	syntaxin of plants 51;(source:Araport11)
AT1G32610.2	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G03630.2	protein_coding	protochlorophyllide oxidoreductase C	Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.	protochlorophyllide oxidoreductase C;(source:Araport11)
AT1G32790.2	protein_coding	CTC-interacting domain 11	RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.	CTC-interacting domain 11;(source:Araport11)
AT1G66940.3	protein_coding	protein kinase-related		kinase-like protein;(source:Araport11)
AT1G66570.2	protein_coding	sucrose-proton symporter 7		sucrose-proton symporter 7;(source:Araport11)
AT1G66570.3	protein_coding	sucrose-proton symporter 7		sucrose-proton symporter 7;(source:Araport11)
AT1G04270.2	protein_coding	cytosolic ribosomal protein S15	Encodes cytosolic ribosomal protein S15.	cytosolic ribosomal protein S15;(source:Araport11)
AT1G60460.2	protein_coding		Encodes a structural homolog of the archaeal topo VIB subunit that forms a complex with the two Arabidopsis thaliana SPO11 orthologs required for meiotic DSB formation (SPO11-1 and SPO11-2) and is essential for meiotic DSB formation.	hypothetical protein;(source:Araport11)
AT1G60460.3	protein_coding		Encodes a structural homolog of the archaeal topo VIB subunit that forms a complex with the two Arabidopsis thaliana SPO11 orthologs required for meiotic DSB formation (SPO11-1 and SPO11-2) and is essential for meiotic DSB formation.	hypothetical protein;(source:Araport11)
AT1G53800.2	protein_coding			muscle M-line assembly protein;(source:Araport11)
AT1G04510.2	protein_coding	MOS4-associated  complex 3A	Encodes MAC3A, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19.  Associated with the MOS4-Associated Complex (MAC).  Involved in plant innate immunity.	MOS4-associated complex 3A;(source:Araport11)
AT1G03840.2	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G03740.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G33110.2	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G22750.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G78870.3	protein_coding	ubiquitin-conjugating enzyme 35	UBC35/UBC13A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UBC35/UBC13A can form diubiquitin and triubiquitin chains in combination with MMZ1,2,3,4/(UEV1A,B,C,D) in vitro. It can also functionally complement an mms2 ubc13 mutation in budding yeast by increasing the double mutant's viability in the presence of the DNA damaging agent MMS, when it is co-expressed with MMZ / UEV1 genes. A wild type phenotype is restored with MMZ3/UEV1C and MMZ4/UEV1D, but only partial complementation is achieved with MMZ1/UEV1A or MMZ2/UEV1B. The mRNA is cell-to-cell mobile.	ubiquitin-conjugating enzyme 35;(source:Araport11)
AT1G22790.2	protein_coding			Low affinity potassium transport system protein;(source:Araport11)
AT1G22430.2	protein_coding	GroES-like zinc-binding dehydrogenase family protein		GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT1G28600.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G73770.2	protein_coding			coiled-coil protein;(source:Araport11)
AT1G28490.2	protein_coding	syntaxin of plants 61	Encodes SYP61, one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. SYP61 and SYP121 coordinate the trafficking of plasma membrane aquaporin PIP2;7 to modulate the cell membrane water permeability.	syntaxin of plants 61;(source:Araport11)
AT1G73930.2	protein_coding			polarity axis stabilization protein;(source:Araport11)
AT1G55730.2	protein_coding	cation exchanger 5	member of Low affinity calcium antiporter CAX2 family	cation exchanger 5;(source:Araport11)
AT1G50000.2	protein_coding	methyltransferases		methyltransferase;(source:Araport11)
AT1G49730.4	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G79630.3	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G28960.5	protein_coding	nudix hydrolase homolog 15	Encodes a ppGpp pyrophosphohydrolase.	nudix hydrolase homolog 15;(source:Araport11)
AT1G78900.2	protein_coding	vacuolar ATP synthase subunit A	Encodes catalytic subunit A of the vacuolar ATP synthase.  Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology. The mRNA is cell-to-cell mobile.	vacuolar ATP synthase subunit A;(source:Araport11)
AT1G29040.3	protein_coding			50S ribosomal protein L34;(source:Araport11)
AT1G62610.3	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G73960.2	protein_coding	TBP-associated factor 2		TBP-associated factor 2;(source:Araport11)
AT1G22360.2	protein_coding	UDP-glucosyl transferase 85A2		UDP-glucosyl transferase 85A2;(source:Araport11)
AT1G79500.4	protein_coding	Aldolase-type TIM barrel family protein	Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT1G62640.2	protein_coding	3-ketoacyl-acyl carrier protein synthase III	3-ketoacyl-acyl carrier protein synthase III (KAS III)	3-ketoacyl-acyl carrier protein synthase III;(source:Araport11)
AT1G29120.3	protein_coding	Hydrolase-like protein family		Hydrolase-like protein family;(source:Araport11)
AT1G29120.4	protein_coding	Hydrolase-like protein family		Hydrolase-like protein family;(source:Araport11)
AT1G79590.2	protein_coding	syntaxin of plants 52	Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.	syntaxin of plants 52;(source:Araport11)
AT1G22880.2	protein_coding	cellulase 5		cellulase 5;(source:Araport11)
AT1G13607.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G60983.1	protein_coding	SCR-like 8	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 8;(source:Araport11)
AT1G09157.1	protein_coding	Protein of unknown function (DUF679)		transmembrane protein, putative (DUF679);(source:Araport11)
AT1G48267.1	miRNA_primary_transcript	MIR161; miRNA	Encodes a microRNA that targets several PPR family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCAAUGCAUUGAAAGUGACUA. Pri-mRNA coordinates for MIR161 (converted to TAIR10 based on PMID19304749): Chr4: 17825619-17826317 (forward), length: 699 bp; exon coordinates: exon 1: 17825619 to 17825867, exon 2: 17825996 to 17826317; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR161 precursor;(source:Araport11)
AT1G33607.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G14182.1	pseudogene		Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	pseudogene of SCR-like 1;(source:Araport11)
AT1G61685.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of Defensin-like (DEFL) family protein;(source:Araport11)
AT1G65113.1	protein_coding	SCR-like 2	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 2;(source:Araport11)
AT1G03982.1	protein_coding	PAK-box/P21-Rho-binding family protein		PAK-box/P21-Rho-binding family protein;(source:Araport11)
AT1G63522.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G13605.1	protein_coding		Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT1G73687.1	miRNA_primary_transcript	MIR159/MIR159A; miRNA	Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUUGGAUUGAAGGGAGCUCUA. Functions redundantly with MIR159B. Plants that are doubly mutated for MIR159AB have curled leaves and reduced stature. Pri-mRNA coordinates for MIR159a (converted to TAIR10 based on PMID19304749): Chr1: 27713700-27712893  (reverse), length: 808 bp; exon coordinates: exon 1: 27713700 to 27712893, mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR159a precursor;(source:Araport11)
AT1G10417.1	protein_coding		Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.	RUN/FYVE domain protein;(source:Araport11)
AT1G48742.1	miRNA_primary_transcript	MIR157D; miRNA	Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAUAGAGAGCAC	microRNA ath-MIR157d precursor;(source:Araport11)
AT1G01183.1	miRNA_primary_transcript	MIR165/MIR165A; miRNA	Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUCCCC. Accumulation of the pri-miRNA165a transcript is increased by the activity of the miPEP165 peptide which is encoded within the pri-miRNA165a transcript.	microRNA ath-MIR165a precursor;(source:Araport11)
AT1G58037.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G31772.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G35537.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like peptide with antifungal activity.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G61688.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G59833.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G15757.1	protein_coding	Molecular chaperone Hsp40/DnaJ family protein	Encodes a defensin-like (DEFL) family protein.	Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT1G73607.1	protein_coding	low-molecular-weight cysteine-rich 65	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 65;(source:Araport11)
AT1G26235.1	other_rna	other RNA	Encodes a snmRNA. Gb: AJ505711	other_RNA;(source:Araport11)
AT1G06923.1	protein_coding			transcription repressor OFP17-like protein;(source:Araport11)
AT1G64195.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G13608.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G68907.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G56553.1	protein_coding		Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT1G31245.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of defensin-like protein;(source:Araport11)
AT1G66783.1	miRNA_primary_transcript	MIR157A; miRNA	Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGACAGAAGAUAGAGAGCAC	microRNA ath-MIR157a precursor;(source:Araport11)
AT1G11055.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	unknown protein;(source:Araport11)
AT1G58055.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G66795.1	miRNA_primary_transcript	MIR157B; miRNA	Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGACAGAAGAUAGAGAGCAC	microRNA ath-MIR157b precursor;(source:Araport11)
AT1G12013.1	small_nucleolar_rna	SNOR111; snoRNA	Encodes a H/ACA-box snoRNA (snoR111). Gb: AJ505682	SNOR111,snoRNA;(source:Araport11)
AT1G26796.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G35435.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT1G63535.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G77093.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G49715.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G08695.1	protein_coding	SCR-like 3	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 3;(source:Araport11)
AT1G13755.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G65352.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT1G32763.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT1G45063.1	protein_coding	copper ion binding;electron carriers		copper ion binding / electron carrier protein;(source:Araport11)
AT1G32337.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G25425.1	protein_coding	CLAVATA3/ESR-RELATED 43		CLAVATA3/ESR-RELATED 43;(source:Araport11)
AT1G29179.1	protein_coding			cysteine/histidine-rich C1 domain protein;(source:Araport11)
AT1G47317.1	protein_coding		Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT1G69828.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G68905.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G48422.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	unknown protein;(source:Araport11)
AT1G05894.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G12244.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G28335.1	protein_coding	low-molecular-weight cysteine-rich 31	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 31;(source:Araport11)
AT1G30814.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G67775.1	protein_coding	CLAVATA3/ESR-RELATED 8	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. It positively regulates expression of the transcription factor gene  WUSCHEL-LIKE HOMEOBOX8 (WOX8), and together  CLE8 and WOX8 form a signaling module that promotes seed growth and overall seed size.	CLAVATA3/ESR-RELATED 8;(source:Araport11)
AT1G60989.1	protein_coding	SCR-like 7	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 7;(source:Araport11)
AT1G30473.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G50055.1	other_rna	TAS1B; other RNA	Trans-acting siRNA1b primary transcript (TAS1b). Regulated by miR173.	other_RNA;(source:Araport11)
AT1G64107.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT1G69825.1	protein_coding		Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT1G18075.1	miRNA_primary_transcript	MIR159/MIR159B; miRNA	Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUUGGAUUGAAGGGAGCUCUU. Functions redundantly with MIR159A. Plants that are doubly mutated for MIR159AB have curled leaves and reduced stature.	microRNA ath-MIR159b precursor;(source:Araport11)
AT1G54445.1	protein_coding	Protein of unknown function (PD694200)	Encodes a defensin-like (DEFL) family protein.	Protein of unknown function (PD694200);(source:Araport11)
AT1G14755.1	protein_coding	S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family	Encodes a defensin-like (DEFL) family protein.	S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family;(source:Araport11)
AT1G76954.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G60986.1	protein_coding	SCR-like 4	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 4;(source:Araport11)
AT1G32583.1	protein_coding		A microRNA MIR400 is derived from the first intron of At1g32583 in the 5'UTR. A stress-induced alternative splicing event in At1g32583 resulted in greater accumulation of miR400 primary transcripts and a low level of mature miR400.	tapetum determinant protein;(source:Araport11)
AT1G69818.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G72416.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G12775.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G66725.1	miRNA_primary_transcript	MIR163; miRNA	Encodes a microRNA that targets several SAMT family members. miR163, is highly expressed in A. thaliana diploids but down-regulated in A. thaliana autotetraploids and repressed in A. arenosa and A. suecica.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGAAGAGGACUUGGAACUUCGAU	microRNA ath-MIR163 precursor;(source:Araport11)
AT1G26233.1	small_nucleolar_rna	SNOR95; snoRNA	Encodes a H/ACA-box snoRNA (snoR95). Gb: AJ505672	SNOR95,snoRNA;(source:Araport11)
AT1G68735.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of low-molecular-weight cysteine-rich 30;(source:Araport11)
AT1G24062.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT1G55928.1	protein_coding	Coiled-coil domain-containing protein 55 (DUF2040)		nuclear speckle splicing regulatory-like protein (DUF2040);(source:Araport11)
AT1G66855.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G34047.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G12064.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G32928.1	protein_coding			Avr9/Cf-9 rapidly elicited protein;(source:Araport11)
AT1G69587.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G69588;(source:Araport11)
AT1G51802.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	None;(source:Araport11)
AT1G49435.1	protein_coding	low-molecular-weight cysteine-rich 16	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 16;(source:Araport11)
AT1G67195.1	miRNA_primary_transcript	MIR414 (MICRORNA 414)	miRNA (MIR414).  Has been identified as a translated small open reading frame by ribosome profiling.	microRNA ath-MIR414 precursor;(source:Araport11)
AT1G56233.1	protein_coding	Protein of unknown function (PD694200)	Encodes a defensin-like (DEFL) family protein.	Protein of unknown function (PD694200);(source:Araport11)
AT1G73603.1	protein_coding	low-molecular-weight cysteine-rich 64	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 64;(source:Araport11)
AT1G13609.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G24250.2	protein_coding	Protein of unknown function (DUF295)		LOW protein: F-box/kelch-repeat protein (DUF295);(source:Araport11)
AT2G01275.2	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G01260.3	protein_coding	Protein of unknown function (DUF789)		hypothetical protein (DUF789);(source:Araport11)
AT2G29890.2	protein_coding	villin-like 1	Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed.  Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding.  VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.	villin-like 1;(source:Araport11)
AT2G29540.2	protein_coding	RNApolymerase 14 kDa subunit	RNA polymerase I(A) and III(C) 14 kDa subunit	RNApolymerase 14 kDa subunit;(source:Araport11)
AT2G46590.2	protein_coding	Dof-type zinc finger DNA-binding family protein	Encodes a protein containing Dof zinc finger motifs that is a positive regulator of light-mediated seed germination. Its expression is limited to vascular system of the mother plant. A recessive mutation is inherited as maternal-effect and expression is not detected in the embryo. Mutants are defective in seed germination and are more dependent on light and cold treatment and less sensitive to gibberellin during seed germination.  It plays its main role downstream of PIL5 and DAG1 in the phytochrome B (phyB)-mediated pathway.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT2G46680.2	protein_coding	homeobox 7	encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined.  Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response.	homeobox 7;(source:Araport11)
AT2G01450.3	protein_coding	MAP kinase 17	MPK17 Map kinase family member. Mutants have increased numbers of peroxisomes a phenotype that can be suppressed by mutations in  PMD1. This and other treatments, suggests a function in control of peroxisome proliferation in salt stress.	MAP kinase 17;(source:Araport11)
AT2G01450.2	protein_coding	MAP kinase 17	MPK17 Map kinase family member. Mutants have increased numbers of peroxisomes a phenotype that can be suppressed by mutations in  PMD1. This and other treatments, suggests a function in control of peroxisome proliferation in salt stress.	MAP kinase 17;(source:Araport11)
AT2G01450.4	protein_coding	MAP kinase 17	MPK17 Map kinase family member. Mutants have increased numbers of peroxisomes a phenotype that can be suppressed by mutations in  PMD1. This and other treatments, suggests a function in control of peroxisome proliferation in salt stress.	MAP kinase 17;(source:Araport11)
AT2G41100.3	protein_coding	Calcium-binding EF hand family protein	encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers. The mRNA is cell-to-cell mobile.	Calcium-binding EF hand family protein;(source:Araport11)
AT2G40640.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G40570.2	protein_coding	initiator tRNA phosphoribosyl transferase family protein		initiator tRNA phosphoribosyl transferase family protein;(source:Araport11)
AT2G40920.2	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G46530.3	protein_coding	auxin response factor 11		auxin response factor 11;(source:Araport11)
AT2G29350.3	protein_coding	senescence-associated gene 13	senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase	senescence-associated gene 13;(source:Araport11)
AT2G41350.2	protein_coding		Encodes AUG1, likely to be in an augmin-like complex with AUG3.	HAUS augmin-like complex subunit;(source:Araport11)
AT2G35550.3	protein_coding	basic pentacysteine 7		basic pentacysteine 7;(source:Araport11)
AT2G35660.3	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein	Encodes a member of a novel gene family with  homology to known proteins involved in hydroxylation and oxidation of an aromatic ring.	FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT2G35380.2	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G42210.4	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT2G42210.2	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT2G42210.3	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT2G35390.3	protein_coding	Phosphoribosyltransferase family protein		Phosphoribosyltransferase family protein;(source:Araport11)
AT2G01940.2	protein_coding	C2H2-like zinc finger protein	Encodes a transcription factor that, together with IDD14 and IDD16, regulates auxin biosynthesis and transport and thus aerial organ morphogenesis and gravitropic responses. May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.	C2H2-like zinc finger protein;(source:Araport11)
AT2G01910.2	protein_coding	Microtubule associated protein (MAP65/ASE1) family protein	Binds microtubules. Induces a crisscross mesh of microtubules, not bundles.  Not involved in microtubule polymerization nor nucleation. Localizes to mitochondria. The mRNA is cell-to-cell mobile.	Microtubule associated protein (MAP65/ASE1) family protein;(source:Araport11)
AT2G30520.2	protein_coding	Phototropic-responsive NPH3 family protein	light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT2G35940.3	protein_coding	BEL1-like homeodomain 1	Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles.  Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.	BEL1-like homeodomain 1;(source:Araport11)
AT2G41540.3	protein_coding	6-phosphogluconate dehydrogenase family protein	Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene.	6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT2G18280.2	protein_coding	tubby like protein 2	Member of TLP family The mRNA is cell-to-cell mobile.	tubby like protein 2;(source:Araport11)
AT2G18410.2	protein_coding			elongator complex protein;(source:Araport11)
AT2G41700.2	protein_coding	ATP-binding cassette A1		ATP-binding cassette A1;(source:Araport11)
AT2G47240.2	protein_coding	AMP-dependent synthetase and ligase family protein	Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis The mRNA is cell-to-cell mobile.	AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT2G47060.3	protein_coding	Protein kinase superfamily protein	Encodes Pto-interacting 1-4 (PTI1-4), a member of the PTI1-like serine/threonine protein kinases that share strong sequence identity to the tomato PTI1 kinase.	Protein kinase superfamily protein;(source:Araport11)
AT2G47060.4	protein_coding	Protein kinase superfamily protein	Encodes Pto-interacting 1-4 (PTI1-4), a member of the PTI1-like serine/threonine protein kinases that share strong sequence identity to the tomato PTI1 kinase.	Protein kinase superfamily protein;(source:Araport11)
AT2G46820.2	protein_coding	photosystem I P subunit	Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits.	photosystem I P subunit;(source:Araport11)
AT2G18890.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G18750.2	protein_coding	Calmodulin-binding protein		Calmodulin-binding protein;(source:Araport11)
AT2G22980.2	protein_coding	serine carboxypeptidase-like 13		serine carboxypeptidase-like 13;(source:Araport11)
AT2G22970.2	protein_coding	serine carboxypeptidase-like 11		serine carboxypeptidase-like 11;(source:Araport11)
AT2G17560.2	protein_coding	high mobility group B4	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.	high mobility group B4;(source:Araport11)
AT2G17500.4	protein_coding	Auxin efflux carrier family protein		Auxin efflux carrier family protein;(source:Araport11)
AT2G23060.2	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G22660.2	protein_coding	Protein of unknown function (duplicated DUF1399)	Encodes a member of a family of DUF1399 domain containing proteins. GRDP1 is involved in germination and response to ABA. Loss of function mutants have reduced germination in the presence of osmotic stressors.	DNA-binding protein, putative (duplicated DUF1399);(source:Araport11)
AT2G22690.2	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT2G28250.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G45380.2	protein_coding			myeloid leukemia factor;(source:Araport11)
AT2G45070.2	protein_coding	Preprotein translocase Sec, Sec61-beta subunit protein	Sec61 Beta Subunit	Preprotein translocase Sec, Sec61-beta subunit protein;(source:Araport11)
AT2G45070.3	protein_coding	Preprotein translocase Sec, Sec61-beta subunit protein	Sec61 Beta Subunit	Preprotein translocase Sec, Sec61-beta subunit protein;(source:Araport11)
AT2G17780.2	protein_coding	PLAC8 family protein	Encodes a mechanosensitive channel candidate MCA2. The three-dimensional structure of MCA2 was reconstructed and appears to comprise a small transmembrane region and large cytoplasmic region.	PLAC8 family protein;(source:Araport11)
AT2G17780.3	protein_coding	PLAC8 family protein	Encodes a mechanosensitive channel candidate MCA2. The three-dimensional structure of MCA2 was reconstructed and appears to comprise a small transmembrane region and large cytoplasmic region.	PLAC8 family protein;(source:Araport11)
AT2G17780.4	protein_coding	PLAC8 family protein	Encodes a mechanosensitive channel candidate MCA2. The three-dimensional structure of MCA2 was reconstructed and appears to comprise a small transmembrane region and large cytoplasmic region.	PLAC8 family protein;(source:Araport11)
AT2G45330.2	protein_coding	RNA 2'-phosphotransferase, Tpt1 / KptA family		RNA 2-phosphotransferase, Tpt1 / KptA family;(source:Araport11)
AT2G05440.3	protein_coding	GLYCINE RICH PROTEIN 9		GLYCINE RICH PROTEIN 9;(source:Araport11)
AT2G05440.4	protein_coding	GLYCINE RICH PROTEIN 9		GLYCINE RICH PROTEIN 9;(source:Araport11)
AT2G05440.5	protein_coding	GLYCINE RICH PROTEIN 9		GLYCINE RICH PROTEIN 9;(source:Araport11)
AT2G05440.8	protein_coding	GLYCINE RICH PROTEIN 9		GLYCINE RICH PROTEIN 9;(source:Araport11)
AT2G05440.7	protein_coding	GLYCINE RICH PROTEIN 9		GLYCINE RICH PROTEIN 9;(source:Araport11)
AT2G05440.6	protein_coding	GLYCINE RICH PROTEIN 9		GLYCINE RICH PROTEIN 9;(source:Araport11)
AT2G34150.2	protein_coding	SCAR family protein	Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT2G34250.2	protein_coding	SecY protein transport family protein		SecY protein transport family protein;(source:Araport11)
AT2G05520.2	protein_coding	glycine-rich protein 3	Encodes a glycine-rich protein that is expressed mainly in stems and leaves.  AtGRP3 functions in root size determination during development and in Al stress. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to desiccation. The mRNA is cell-to-cell mobile.	glycine-rich protein 3;(source:Araport11)
AT2G05520.4	protein_coding	glycine-rich protein 3	Encodes a glycine-rich protein that is expressed mainly in stems and leaves.  AtGRP3 functions in root size determination during development and in Al stress. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to desiccation. The mRNA is cell-to-cell mobile.	glycine-rich protein 3;(source:Araport11)
AT2G05520.3	protein_coding	glycine-rich protein 3	Encodes a glycine-rich protein that is expressed mainly in stems and leaves.  AtGRP3 functions in root size determination during development and in Al stress. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to desiccation. The mRNA is cell-to-cell mobile.	glycine-rich protein 3;(source:Araport11)
AT2G05520.5	protein_coding	glycine-rich protein 3	Encodes a glycine-rich protein that is expressed mainly in stems and leaves.  AtGRP3 functions in root size determination during development and in Al stress. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to desiccation. The mRNA is cell-to-cell mobile.	glycine-rich protein 3;(source:Araport11)
AT2G05510.2	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT2G05510.3	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT2G39760.2	protein_coding	BTB/POZ/MATH-domains containing protein	Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB/POZ/MATH-domains containing protein;(source:Araport11)
AT2G34300.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G27900.2	protein_coding			coiled-coil protein;(source:Araport11)
AT2G27920.3	protein_coding	serine carboxypeptidase-like 51		serine carboxypeptidase-like 51;(source:Araport11)
AT2G34410.2	protein_coding	O-acetyltransferase family protein	Encodes a homolog of the protein Cas1p known to be involved in polysaccharide O-acetylation in Cryptococcus neoformans.  Has high similarity to RWA2 whose mutant displays reduced acetylation. The protein is expressed in the Golgi and is involved in the acetylation of xylan during secondary wall biosynthesis.	O-acetyltransferase family protein;(source:Araport11)
AT2G34410.3	protein_coding	O-acetyltransferase family protein	Encodes a homolog of the protein Cas1p known to be involved in polysaccharide O-acetylation in Cryptococcus neoformans.  Has high similarity to RWA2 whose mutant displays reduced acetylation. The protein is expressed in the Golgi and is involved in the acetylation of xylan during secondary wall biosynthesis.	O-acetyltransferase family protein;(source:Araport11)
AT2G05840.2	protein_coding	20S proteasome subunit PAA2	Encodes 20S proteasome subunit PAA2 (PAA2).	20S proteasome subunit PAA2;(source:Araport11)
AT2G05830.3	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein	Encodes a 5-methylthioribose-1-phosphate isomerase.	NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT2G28930.3	protein_coding	protein kinase 1B		protein kinase 1B;(source:Araport11)
AT2G28930.2	protein_coding	protein kinase 1B		protein kinase 1B;(source:Araport11)
AT2G28560.2	protein_coding	DNA repair (Rad51) family protein	Encodes a protein of the RAD51B family involved in double stranded DNA repair. Homozygous mutant plants show increased sensitivity to mitomycin which induces DS breaks.	DNA repair (Rad51) family protein;(source:Araport11)
AT2G28540.2	protein_coding	RNA binding (RRM/RBD/RNP motifs) family protein		RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G45990.4	protein_coding			ribosomal RNA small subunit methyltransferase G;(source:Araport11)
AT2G45990.3	protein_coding			ribosomal RNA small subunit methyltransferase G;(source:Araport11)
AT2G24070.2	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT2G23985.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G45800.2	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT2G23760.3	protein_coding	BEL1-like homeodomain 4	Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw2 and saw1 may act redundantly to repress BP in leaves.	BEL1-like homeodomain 4;(source:Araport11)
AT2G45740.3	protein_coding	peroxin 11D	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. The mRNA is cell-to-cell mobile.	peroxin 11D;(source:Araport11)
AT2G45720.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT2G34540.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G34630.2	protein_coding	geranyl diphosphate synthase 1	Encodes a geranyl diphosphate synthase. RNAi lines are dwarf. T-DNA knock-out lines are embryo lethal.	geranyl diphosphate synthase 1;(source:Araport11)
AT2G40290.3	protein_coding	Eukaryotic translation initiation factor 2 subunit 1	Encodes an eIF2alpha homolog that can be phosphorylated by GCN2 in vitro.	Eukaryotic translation initiation factor 2 subunit 1;(source:Araport11)
AT2G34470.2	protein_coding	urease accessory protein G	Encodes a urease accessory protein which is essential for the activation of plant urease.	urease accessory protein G;(source:Araport11)
AT2G40140.2	protein_coding	zinc finger (CCCH-type) family protein		zinc finger (CCCH-type) family protein;(source:Araport11)
AT2G34450.2	protein_coding	HMG-box (high mobility group) DNA-binding family protein		HMG-box (high mobility group) DNA-binding family protein;(source:Araport11)
AT2G11890.2	protein_coding	adenylate cyclases	Encodes a tripolyphosphatase that is involved in root development.	adenylate cyclase;(source:Araport11)
AT2G35060.2	protein_coding	K+ uptake permease 11	potassium transporter	K+ uptake permease 11;(source:Araport11)
AT2G12480.2	protein_coding	serine carboxypeptidase-like 43		serine carboxypeptidase-like 43;(source:Araport11)
AT2G35110.2	protein_coding	transcription activators	Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Mutant displays distorted trichomes, a phenotype that can be phenocopied by treatment of WT plants with actin-interacting drugs. Its ER localization is independent of upstream SPK1 activation signaling and the physical association with the WAVE/SCAR Regulatory complex binding partner SRA1. ER-localized NAP1 has little colocalization with actin and represent the inactive pool of NAP1 in these cell types.	transcription activator;(source:Araport11)
AT2G21070.2	protein_coding	methyltransferases	This gene is predicted to an encode a protein that is involved in regulating the period of circadian rhythms without affecting their amplitude or robustness. FIONA1 seems to act as a central oscillator-associated component, but its transcript levels are not regulated in a circadian or light-dependent manner. FIONA1 also appears to be involved in photoperiod-dependent flowering.	methyltransferase;(source:Araport11)
AT2G20900.4	protein_coding	diacylglycerol kinase 5		diacylglycerol kinase 5;(source:Araport11)
AT2G32390.2	protein_coding	glutamate receptor  3.5	Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family.	glutamate receptor 3.5;(source:Araport11)
AT2G32410.2	protein_coding	AXR1-like		AXR1-like protein;(source:Araport11)
AT2G04170.2	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G21195.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G21330.3	protein_coding	fructose-bisphosphate aldolase 1		fructose-bisphosphate aldolase 1;(source:Araport11)
AT2G21330.2	protein_coding	fructose-bisphosphate aldolase 1		fructose-bisphosphate aldolase 1;(source:Araport11)
AT2G21270.2	protein_coding	ubiquitin fusion degradation 1		ubiquitin fusion degradation 1;(source:Araport11)
AT2G21300.2	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT2G37160.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G37270.2	protein_coding	ribosomal protein 5B	One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A.	ribosomal protein 5B;(source:Araport11)
AT2G43740.2	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT2G03810.3	protein_coding	18S pre-ribosomal assembly protein gar2-related		18S pre-ribosomal assembly protein gar2-like protein;(source:Araport11)
AT2G37860.3	protein_coding	Protein of unknown function (DUF3411)	Encodes a protein involved in differential development of bundle sheath and mesophyll cell chloroplasts.	reticulata-like protein, putative (DUF3411);(source:Araport11)
AT2G37620.2	protein_coding	actin 1	Member of the actin gene family. Expressed in mature pollen.	actin 1;(source:Araport11)
AT2G37550.2	protein_coding	ARF-GAP domain 7	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	ARF-GAP domain 7;(source:Araport11)
AT2G31955.2	protein_coding	cofactor of nitrate reductase and xanthine dehydrogenase 2	COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria.	cofactor of nitrate reductase and xanthine dehydrogenase 2;(source:Araport11)
AT2G32000.2	protein_coding	DNA topoisomerase, type IA, core		DNA topoisomerase, type IA, core;(source:Araport11)
AT2G37770.2	protein_coding	NAD(P)-linked oxidoreductase superfamily protein	Encodes an NADPH-dependent aldo-keto reductase that can act on a wide variety of substrates in vitro including saturated and unsaturated aldehydes, steroids, and sugars. GFP-tagged AKR4C9 localizes to the chloroplast where it may play a role in detoxifying reactive carbonyl compounds that threaten to impair the photosynthetic process. Transcript levels for this gene are up-regulated in response to cold, salt, and drought stress.	NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G27230.2	protein_coding	transcription factor-related	Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins.  It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots.	transcription factor-like protein;(source:Araport11)
AT2G05220.2	protein_coding	Ribosomal S17 family protein		Ribosomal S17 family protein;(source:Araport11)
AT2G27110.3	protein_coding	FAR1-related sequence 3		FAR1-related sequence 3;(source:Araport11)
AT2G21580.2	protein_coding	Ribosomal protein S25 family protein		Ribosomal protein S25 family protein;(source:Araport11)
AT2G21540.2	protein_coding	SEC14-like 3		SEC14-like 3;(source:Araport11)
AT2G21590.2	protein_coding	Glucose-1-phosphate adenylyltransferase family protein	Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.	Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT2G27340.3	protein_coding	N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein		N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein;(source:Araport11)
AT2G26980.5	protein_coding	CBL-interacting protein kinase 3	encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.	CBL-interacting protein kinase 3;(source:Araport11)
AT2G26970.2	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G27500.3	protein_coding	Glycosyl hydrolase superfamily protein		Glycosyl hydrolase superfamily protein;(source:Araport11)
AT2G38620.2	protein_coding	cyclin-dependent kinase B1;2	Encodes a member of a plant specific family of cyclin dependent kinases.	cyclin-dependent kinase B1;(source:Araport11)
AT2G38660.2	protein_coding	Amino acid dehydrogenase family protein		Amino acid dehydrogenase family protein;(source:Araport11)
AT2G38710.2	protein_coding	AMMECR1 family		AMMECR1 family;(source:Araport11)
AT2G32700.6	protein_coding	LEUNIG_homolog	Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. Involved in cell wall modifications necessary for mucilage extrusion and mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification.	LEUNIG-like protein;(source:Araport11)
AT2G32690.2	protein_coding	glycine-rich protein 23	Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.	glycine-rich protein 23;(source:Araport11)
AT2G32690.3	protein_coding	glycine-rich protein 23	Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.	glycine-rich protein 23;(source:Araport11)
AT2G32690.4	protein_coding	glycine-rich protein 23	Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.	glycine-rich protein 23;(source:Araport11)
AT2G32760.2	protein_coding		Homolog of yeast VPS38P. Interacts with PI3K.Mutants have defects in late endosome morphology and  retromer function.	UV radiation resistance-associated protein;(source:Araport11)
AT2G10850.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43970.1);(source:TAIR10)
AT2G33380.2	protein_coding	Caleosin-related family protein	Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to desiccation.  mRNA expression under drought conditions is apparent particularly in leaves and flowers. Isoform of caleosin with a role as a peroxygenase involved in oxylipin metabolism during biotic and abiotic stress. Involved in the production of 2-hydroxy-octadecatrienoic acid.  The peroxygenase has a narrow substrate specificity thus acting as a fatty acid hydroperoxide reductase in vivo.	Caleosin-related family protein;(source:Araport11)
AT2G04800.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G33340.3	protein_coding	MOS4-associated  complex 3B	Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19.  Associated with the MOS4-Associated Complex (MAC).  Involved in plant innate immunity.	MOS4-associated complex 3B;(source:Araport11)
AT2G04790.3	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G33070.2	protein_coding	nitrile specifier protein 2	Encodes a nitrile-specifier protein NSP2. NSP2 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.	nitrile specifier protein 2;(source:Araport11)
AT2G33120.2	protein_coding	synaptobrevin-related protein 1	Encodes a member of Synaptobrevin-like protein family. Also known as VESICLE-ASSOCIATED MEMBRANE PROTEIN 722 (VAMP722). Required for cell plate formation. Post-transcriptionally regulated by CRT1/2 under ER stress.	synaptobrevin-related protein 1;(source:Araport11)
AT2G42810.2	protein_coding	protein phosphatase 5.2	Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. The gene is alternately spliced. This variant is an integral membrane protein localized to the ER and nuclear envelope. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.  It also regulates tetrapyrrole biosynthesis through the accumulation of Mg-ProtoIX and acts as a negative regulator of photosynthesis associated nuclear gene expression during chloroplast biogenesis and development.	protein phosphatase 5.2;(source:Araport11)
AT2G42590.2	protein_coding	general regulatory factor 9	14-3-3 gene. Binds calcium and displays induced structural changes.	general regulatory factor 9;(source:Araport11)
AT2G42590.3	protein_coding	general regulatory factor 9	14-3-3 gene. Binds calcium and displays induced structural changes.	general regulatory factor 9;(source:Araport11)
AT2G48100.3	protein_coding	Exonuclease family protein		Exonuclease family protein;(source:Araport11)
AT2G48100.4	protein_coding	Exonuclease family protein		Exonuclease family protein;(source:Araport11)
AT2G36360.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G36410.3	protein_coding	Family of unknown function (DUF662) 		transcriptional activator (DUF662);(source:Araport11)
AT2G19730.2	protein_coding	Ribosomal L28e protein family		Ribosomal L28e protein family;(source:Araport11)
AT2G30820.2	protein_coding			aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit;(source:Araport11)
AT2G30600.4	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT2G30600.3	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT2G02560.2	protein_coding	cullin-associated and neddylation dissociated	Arabidopsis thaliana homolog of human  CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1. The mRNA is cell-to-cell mobile.	cullin-associated and neddylation dissociated;(source:Araport11)
AT2G02570.3	protein_coding	nucleic acid binding;RNA binding		nucleic acid binding/RNA binding protein;(source:Araport11)
AT2G25770.2	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT2G47760.2	protein_coding	asparagine-linked glycosylation 3	Encodes an &#945;-1,3-mannosyltransferase. Plants with mutations in the ALG3 protein have abnormal gylcoslation profiles. They also exhibit abnormal responses to MAMPs possibly because the glycan properties of FL22 are affected.	asparagine-linked glycosylation 3;(source:Araport11)
AT2G47760.3	protein_coding	asparagine-linked glycosylation 3	Encodes an &#945;-1,3-mannosyltransferase. Plants with mutations in the ALG3 protein have abnormal gylcoslation profiles. They also exhibit abnormal responses to MAMPs possibly because the glycan properties of FL22 are affected.	asparagine-linked glycosylation 3;(source:Araport11)
AT2G42320.2	protein_coding	nucleolar protein gar2-related		nucleolar protein gar2-like protein;(source:Araport11)
AT2G42300.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G47900.2	protein_coding	tubby like protein 3	Member of plant TLP family which differs in having an F box domain. Plasma membrane tethering is mediated by PIP2 binding domain. Under abiotic stress TLP3 detaches from the PM and translocates to the nucleus. Mutants are insensitive to ABA.	tubby like protein 3;(source:Araport11)
AT2G47470.3	protein_coding	thioredoxin family protein	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response. The mRNA is cell-to-cell mobile.	thioredoxin family protein;(source:Araport11)
AT2G02820.2	protein_coding	myb domain protein 88	Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells.  This phenotype is enhanced in double mutants over the single mutant flp phenotype. Also regulates female reproductive development.	myb domain protein 88;(source:Araport11)
AT2G25690.2	protein_coding	Protein of unknown function (DUF581)		DUF581 family protein, putative (DUF581);(source:Araport11)
AT2G26530.2	protein_coding	Protein of unknown function (DUF1645)	Pheromone receptor-like protein involved in the early elicitor signaling events which occur within minutes and include ion fluxes across the plasma membrane, activation of MPKs and the formation of ROS related to PGPS1 and WRKY33.	AR781, pheromone receptor-like protein (DUF1645);(source:Araport11)
AT2G03730.2	protein_coding	ACT domain repeat 5	Member of a small family of ACT domain containing proteins. ACT domains are thought to be involved in amino acid binding.	ACT domain repeat 5;(source:Araport11)
AT2G03640.2	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT2G26590.3	protein_coding	regulatory particle non-ATPase 13		regulatory particle non-ATPase 13;(source:Araport11)
AT2G26590.2	protein_coding	regulatory particle non-ATPase 13		regulatory particle non-ATPase 13;(source:Araport11)
AT2G03280.2	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT2G26260.2	protein_coding	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2	Encodes an enzyme with 3&#946;-hydroxysteroid dehydrogenase/C4-decarboxylase activity <i>in vitro</i>. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the <i>Arabidopsis</i> gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound.	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2;(source:Araport11)
AT2G20490.2	protein_coding	nucleolar RNA-binding Nop10p family protein		nucleolar RNA-binding Nop10p family protein;(source:Araport11)
AT2G20550.2	protein_coding	HSP40/DnaJ peptide-binding protein		HSP40/DnaJ peptide-binding protein;(source:Araport11)
AT2G43160.4	protein_coding	ENTH/VHS family protein		ENTH/VHS family protein;(source:Araport11)
AT2G31060.2	protein_coding	elongation factor family protein		elongation factor family protein;(source:Araport11)
AT2G30990.2	protein_coding	Protein of unknown function (DUF688)		arginine N-methyltransferase, putative (DUF688);(source:Araport11)
AT2G36680.3	protein_coding	Modifier of rudimentary (Mod(r)) protein		Modifier of rudimentary (Mod(r)) protein;(source:Araport11)
AT2G25910.2	protein_coding	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein		3-5 exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein;(source:Araport11)
AT2G26060.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a homolog of the yeast Cytosolic Iron-sulfur protein Assembly protein CIA1.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G26030.3	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT2G26000.2	protein_coding	zinc finger (C3HC4-type RING finger) family protein	Encodes a RING domain containing protein BRIZ2. BRIZ1 (At2g42160) and BRIZ2 (At2g26000) proteins form a heteromeric E3 ligase complex required for seed germination and post-germination growth.	zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT2G25850.3	protein_coding	poly(A) polymerase 2	Encodes a poly(A) polymerase. Located in the nucleus.	poly(A) polymerase 2;(source:Araport11)
AT2G37025.2	protein_coding	TRF-like 8		TRF-like 8;(source:Araport11)
AT2G37050.3	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G37050.2	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G37060.3	protein_coding	nuclear factor Y, subunit B8		nuclear factor Y, subunit B8;(source:Araport11)
AT2G31370.5	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G31370.4	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G31280.3	protein_coding	conserved peptide upstream open reading frame 7	Encodes a LHW-like protein with 80% amino acid identity to LHW.	transcription factor bHLH155-like protein;(source:Araport11)
AT2G31280.2	protein_coding	conserved peptide upstream open reading frame 7	Encodes a LHW-like protein with 80% amino acid identity to LHW.	transcription factor bHLH155-like protein;(source:Araport11)
AT2G31290.2	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT2G02870.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G02870.3	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G22250.3	protein_coding	aspartate aminotransferase	Encodes a prokaryotic-type plastidic aspartate aminotransferase with glutamate/aspartate-prephenate aminotransferase (PAT) activity.	aspartate aminotransferase;(source:Araport11)
AT2G38880.4	protein_coding	nuclear factor Y, subunit B1	Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1.  Confers drought tolerance.	nuclear factor Y, subunit B1;(source:Araport11)
AT2G38880.6	protein_coding	nuclear factor Y, subunit B1	Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1.  Confers drought tolerance.	nuclear factor Y, subunit B1;(source:Araport11)
AT2G38880.5	protein_coding	nuclear factor Y, subunit B1	Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1.  Confers drought tolerance.	nuclear factor Y, subunit B1;(source:Araport11)
AT2G39470.2	protein_coding	PsbP-like protein 2		PsbP-like protein 2;(source:Araport11)
AT2G16950.2	protein_coding	transportin 1	TRN1 is an importin beta protein that functions as a nuclear import receptor for AtGRP7 and in interacts with AGO1 to affect miRNA loading.	transportin 1;(source:Araport11)
AT2G44090.2	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT2G17150.2	protein_coding	Plant regulator RWP-RK family protein		Plant regulator RWP-RK family protein;(source:Araport11)
AT2G44210.2	protein_coding	Protein of Unknown Function (DUF239)		carboxyl-terminal peptidase (DUF239);(source:Araport11)
AT2G39090.2	protein_coding	tetratricopeptide repeat (TPR)-containing protein		tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT2G16990.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G39690.2	protein_coding	Protein of unknown function, DUF547		ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT2G36355.1	protein_coding	Family of unknown function (DUF662) 		RAB6-interacting golgin (DUF662);(source:Araport11)
AT2G31751.1	antisense_long_noncoding_rna	unknown gene	Potential natural antisense gene, locus overlaps with AT2G31750	Natural antisense transcript overlaps with AT2G31750;(source:Araport11)
AT2G03932.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G05117.1	protein_coding	SCR-like 9	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 9;(source:Araport11)
AT2G25295.1	protein_coding	low-molecular-weight cysteine-rich 81	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 81;(source:Araport11)
AT2G01918.1	protein_coding	PsbQ-like 3	Encode a protein homologous to each PQL protein. Mutational analysis indicates that PQL3 is also required for NDH activity.	PsbQ-like 3;(source:Araport11)
AT2G03937.2	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G03937.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G48075.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G03936.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G06983.1	protein_coding	SCR-like 16	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 16;(source:Araport11)
AT2G30432.1	protein_coding	Homeodomain-like superfamily protein	Encodes TRICHOMELESS1 (TCL1), a single-repeat MYB-type transcription factor that negatively regulates trichome formation by suppressing GL1 (GLABRA1). In a tandem repeat with AT2g30424 and AT2g30420.	Homeodomain-like superfamily protein;(source:Araport11)
AT2G22345.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT2G39681.1	other_rna	TAS2; other RNA	Trans-acting siRNA primary transcript. RDR6-dependent trans-acting siRNA-generating locus. Regulated by miR173.  Produces at least four distinct ta-siRNAs directed against PPR genes.	other_RNA;(source:Araport11)
AT2G31953.1	protein_coding	low-molecular-weight cysteine-rich 76	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 76;(source:Araport11)
AT2G04033.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of Putative membrane lipoprotein;(source:Araport11)
AT2G20463.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G22941.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G46685.1	miRNA_primary_transcript	MIR166/MIR166A; miRNA	Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. This particular miRNA is involved in the regulation of vascular development in inflorescence stems, primarily through the regulation of mRNA cleavage of the class III homeodomain-leucine zipper transcription factor ATHB15.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC. Pri-mRNA coordinates for MIR166a (converted to TAIR10 based on PMID19304749): Chr2: 19175959-19177071 (forward), length: 1113 bp; exon coordinates: exon 1: 19175959 to 19176341, exon 2: 19176820 to 19177071; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR166a precursor;(source:Araport11)
AT2G19893.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G22805.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G10535.1	protein_coding	low-molecular-weight cysteine-rich 29	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 29;(source:Araport11)
AT2G36255.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G24615.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G04046.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G39675.1	other_rna	TAS1C; other RNA	Trans-acting siRNA1c primary transcript (TAS1c). Gb: AY922999	other_RNA;(source:Araport11)
AT2G22807.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G19802.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G31957.1	protein_coding	low-molecular-weight cysteine-rich 75	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 75;(source:Araport11)
AT2G07795.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G14365.1	protein_coding	low-molecular-weight cysteine-rich 84	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 84;(source:Araport11)
AT2G02147.1	protein_coding	low-molecular-weight cysteine-rich 73	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 73;(source:Araport11)
AT2G01913.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G25685.1	protein_coding	SCR-like 17	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 17;(source:Araport11)
AT2G12475.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G16676.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT2G28405.1	protein_coding	low-molecular-weight cysteine-rich 32	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 32;(source:Araport11)
AT2G03958.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of Defensin-like (DEFL) family protein;(source:Araport11)
AT2G29045.1	protein_coding	low-molecular-weight cysteine-rich 62	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 62;(source:Araport11)
AT2G17442.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07669.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G13542.1	protein_coding		Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT2G03931.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G24625.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G20208.1	protein_coding	low-molecular-weight cysteine-rich 60	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 60;(source:Araport11)
AT2G33707.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of Defensin-like (DEFL) family protein;(source:Araport11)
AT2G25687.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of SCR-like 4;(source:Araport11)
AT2G03934.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of Defensin-like (DEFL) family protein;(source:Araport11)
AT2G03933.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT2G16367.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	None;(source:Araport11)
AT2G27145.1	protein_coding	low-molecular-weight cysteine-rich 9	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 9;(source:Araport11)
AT2G24617.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G01905.1	protein_coding	cyclin J18	cyclin J18 (cycJ18)	cyclin J18;(source:Araport11)
AT2G21465.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G04425.1	protein_coding	low-molecular-weight cysteine-rich 82	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 82;(source:Araport11)
AT2G02135.1	pseudogene		Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	pseudogene of low-molecular-weight cysteine-rich 68;(source:Araport11)
AT2G21725.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G05335.1	protein_coding	SCR-like 15	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 15;(source:Araport11)
AT2G34185.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G25095.1	miRNA_primary_transcript	MIR156A; miRNA	Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC. Pri-mRNA coordinates for MIR156a (converted to TAIR10 based on PMID19304749): Chr2: 10677064-10673957 (reverse), length: 3108 bp; exon coordinates: exon 1: 10677064 to 10676955, exon 2: 10676613 to 10676366, exon 3: 10674380 to 10674338, exon 4: 10674245 to 10673957; mature miRNA and miRNA* are located on exon 2.	microRNA ath-MIR156a precursor;(source:Araport11)
AT2G04034.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT2G31425.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT2G12462.1	protein_coding			sterile alpha motif (SAM) domain protein;(source:Araport11)
AT2G04925.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT2G39175.1	miRNA_primary_transcript	MIR160/MIR160A; miRNA	Encodes a microRNA that targets several ARF family members (ARF10, ARF16, ARF17). Hypomorphic mutants exhibit defects in embryo, vegetative and floral development.MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCUGGCUCCCUGUAUGCCA. Pri-mRNA coordinates for MIR160a (converted to TAIR10 based on PMID19304749): Chr2: 16339853-16341886 (forward), length: 2034 bp; exon coordinates: exon 1: 16339853 to 16340469, exon 2: 16341621 to 16341886; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR160a precursor;(source:Araport11)
AT2G16586.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G14935.1	protein_coding	low-molecular-weight cysteine-rich 40	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 40;(source:Araport11)
AT2G25344.1	protein_coding	low-molecular-weight cysteine-rich 14	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 14;(source:Araport11)
AT2G03913.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT2G04045.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G40995.1	protein_coding	Molecular chaperone Hsp40/DnaJ family protein	Encodes a defensin-like (DEFL) family protein.	Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT2G25255.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of Defensin-like (DEFL) family protein;(source:Araport11)
AT2G04047.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of Defensin-like (DEFL) family protein;(source:Araport11)
AT2G12646.1	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT2G30933.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT2G12465.1	protein_coding	low-molecular-weight cysteine-rich 50	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 50;(source:Araport11)
AT2G33233.1	protein_coding	low-molecular-weight cysteine-rich 49	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 49;(source:Araport11)
AT2G47585.1	miRNA_primary_transcript	MIR164/MIR164A; miRNA	Encodes a microRNA that targets several genes containing NAC domains including NAC1 and ORE1. Overexpression leads to decreased NAC1 mRNA and reduced lateral roots. Loss of function mutants have increased NAC1 and increased number of lateral roots. Also targets CUC2 and modulates the extent of leaf margin serration. Also targets ORE1 to negatively regulate the timing of leaf senescence. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGGAGAAGCAGGGCACGUGCA. The miR164a pri-mRNA also encodes a regulatory peptide miPEP164a (AT2G47584) that regulates accumulation of its own miRNA.	microRNA ath-MIR164a precursor;(source:Araport11)
AT2G27400.1	other_rna	TAS1A; other RNA	Trans-acting siRNA1a primary transcript (TAS1a). Regulated by miR173.	other_RNA;(source:Araport11)
AT2G06166.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G36724.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G34123.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT2G25185.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT2G14282.1	protein_coding	SCR-like 18	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 18;(source:Araport11)
AT2G03955.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT2G22121.1	protein_coding	low-molecular-weight cysteine-rich 35	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 35;(source:Araport11)
AT2G17723.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT3G57550.2	protein_coding	guanylate kinase	guanylate kinase	guanylate kinase;(source:Araport11)
AT3G28690.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G63450.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G28760.2	protein_coding			3-dehydroquinate synthase;(source:Araport11)
AT3G22970.2	protein_coding	Protein of unknown function (DUF506) 		hypothetical protein (DUF506);(source:Araport11)
AT3G28540.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G51260.2	protein_coding	20S proteasome  alpha subunit PAD1	20S proteosomal alpha subunits.  Interacts with SnRK, SKP1/ASK1 during proteasomal binding of an SCF ubiquitin ligase.	20S proteasome alpha subunit PAD1;(source:Araport11)
AT3G23670.2	protein_coding	phragmoplast-associated kinesin-related protein, putative	Microtubule motor kinesin PAKRP1L/Kinesin-12B. Together with PAKRP1/Kinesin-12A, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast.	phragmoplast-associated kinesin-related protein;(source:Araport11)
AT3G23540.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G23600.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G57760.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G57760.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G57750.2	protein_coding	Protein kinase superfamily protein	Encodes a pseudokinase that likely acts as a decoy to lure the P. syringae effector acetyltransferase HopZ1a to the ZAR1-resistance complex, resulting in effector-triggered immunity (ETI) activation.  It is acetylated by HopZ1a.	Protein kinase superfamily protein;(source:Araport11)
AT3G23080.2	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT3G23250.2	protein_coding	myb domain protein 15	Member of the R2R3 factor gene family.	myb domain protein 15;(source:Araport11)
AT3G57930.2	protein_coding			rho GTPase-activating gacO-like protein;(source:Araport11)
AT3G11620.4	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G11470.3	protein_coding	4'-phosphopantetheinyl transferase superfamily	AT3G11470.3 transcript deletes 5 nucleotides in the splicing of the 2nd intron.The resulting transcript begins at a down-stream ?ATG? codon relative to that of AT3G11470.1 and AT3G11470.2, and the resulting protein is 231 residues (vs. 300 for the other variants). This product does not have PPT activity.	4-phosphopantetheinyl transferase superfamily;(source:Araport11)
AT3G45780.2	protein_coding	phototropin 1	Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent  activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376.	phototropin 1;(source:Araport11)
AT3G45310.2	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G17609.3	protein_coding	HY5-homolog	Encodes a homolog of HY5 (HYH).  Involved in phyB signaling pathway.	HY5-homolog;(source:Araport11)
AT3G62880.2	protein_coding	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT3G42150.3	protein_coding			transmembrane protein;(source:Araport11)
AT3G06330.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G06340.2	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT3G11720.2	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT3G62720.2	protein_coding	xylosyltransferase 1	Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.	xylosyltransferase 1;(source:Araport11)
AT3G62770.3	protein_coding	Transducin/WD40 repeat-like superfamily protein	Required for autophagosome formation during nutrient deprivation and senescence, promotes pexophagy during seedling development.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G01340.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G01310.2	protein_coding	Phosphoglycerate mutase-like family protein	Encodes a functional VIP1/PPIP5K-type ATP-grasp kinase that is involved in both InsP6 to InsP7 conversion and InsP7 to InsP8 conversion, producing the InsP8 cofactor of the ASK1-COI1-JAZ-jasmonate co-receptor complex. It is the major isoform in plants, is required for jasmonate-dependent defenses, and plays an important role in plant defenses against necrotrophic fungi and insect herbivores.	Phosphoglycerate mutase-like family protein;(source:Araport11)
AT3G29575.3	protein_coding	ABI five binding protein 3		ABI five binding protein 3;(source:Araport11)
AT3G24180.2	protein_coding	Beta-glucosidase, GBA2 type family protein		Beta-glucosidase, GBA2 type family protein;(source:Araport11)
AT3G24170.2	protein_coding	glutathione-disulfide reductase	Encodes a cytosolic glutathione reductase.	glutathione-disulfide reductase;(source:Araport11)
AT3G24200.2	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT3G01360.2	protein_coding	Family of unknown function (DUF716) 		plant viral-response family protein (DUF716);(source:Araport11)
AT3G29360.2	protein_coding	UDP-glucose 6-dehydrogenase family protein	Encodes one of four UDP-glucose dehydrogenase UGD) genes.  Mutation of this gene in combination with UGD3 leads to swollen plant cell walls and severe developmental defects associated with changes in pectic polysaccharides.	UDP-glucose 6-dehydrogenase family protein;(source:Araport11)
AT3G01100.2	protein_coding	hypothetical protein 1	unknown protein, has cDNAs and ESTs associated to it	hypothetical protein 1;(source:Araport11)
AT3G07360.3	protein_coding	plant U-box 9	The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.	plant U-box 9;(source:Araport11)
AT3G23900.2	protein_coding	RNA recognition motif (RRM)-containing protein		RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT3G52300.2	protein_coding	ATP synthase D chain, mitochondrial		ATP synthase D chain;(source:Araport11)
AT3G17680.2	protein_coding	Kinase interacting (KIP1-like) family protein		Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT3G52340.3	protein_coding	sucrose-6F-phosphate phosphohydrolase 2	sucrose-phosphatase (SPP2)	sucrose-6F-phosphate phosphohydrolase 2;(source:Araport11)
AT3G52210.3	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G52210.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G46640.2	protein_coding	Homeodomain-like superfamily protein	Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock.   LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness.  It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. The mRNA is cell-to-cell mobile.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G46590.2	protein_coding	TRF-like 1	Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers.	TRF-like 1;(source:Araport11)
AT3G46590.3	protein_coding	TRF-like 1	Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers.	TRF-like 1;(source:Araport11)
AT3G51950.2	protein_coding	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein	Contains single CCCH domain.	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT3G01540.4	protein_coding	DEAD box RNA helicase 1	RNA HELICASE DRH1	DEAD box RNA helicase 1;(source:Araport11)
AT3G52150.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G52180.2	protein_coding	dual specificity protein phosphatase (DsPTP1) family protein	Encodes a plant-specific glucan phosphatase that contains a noncatalytic  carbohydrate-binding module as well as a dual specificity protein phosphatase domain. SEX4 can dephosphorylate C6- and C3-glucosyl residues on native starch grains and related maltodextrin compounds in vitro. This protein interacts with the plant SnRK AKIN11, binds starch, and is localized in the chloroplast. sex4 mutants have elevated levels of starch.	dual specificity protein phosphatase (DsPTP1) family protein;(source:Araport11)
AT3G46210.2	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT3G46210.3	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT3G46210.4	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT3G11930.4	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G46130.2	protein_coding	myb domain protein 48	Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.	myb domain protein 48;(source:Araport11)
AT3G12100.2	protein_coding	Cation efflux family protein		Cation efflux family protein;(source:Araport11)
AT3G46440.2	protein_coding	UDP-XYL synthase 5	encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.	UDP-XYL synthase 5;(source:Araport11)
AT3G51770.2	protein_coding	tetratricopeptide repeat (TPR)-containing protein	Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G45960.2	protein_coding	expansin-like A3	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin-like A3;(source:Araport11)
AT3G12140.3	protein_coding	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein		Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein;(source:Araport11)
AT3G07110.2	protein_coding	Ribosomal protein L13 family protein		Ribosomal protein L13 family protein;(source:Araport11)
AT3G12620.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G07300.2	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein		NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT3G12250.4	protein_coding	TGACG motif-binding factor 6	basic leucine zipper transcription factor involved in the activation of SA-responsive genes.	TGACG motif-binding factor 6;(source:Araport11)
AT3G12530.2	protein_coding	PSF2		PSF2;(source:Araport11)
AT3G12570.4	protein_coding	FYD		FYD;(source:Araport11)
AT3G06700.3	protein_coding	Ribosomal L29e protein family		Ribosomal L29e protein family;(source:Araport11)
AT3G06700.2	protein_coding	Ribosomal L29e protein family		Ribosomal L29e protein family;(source:Araport11)
AT3G63530.2	protein_coding	RING/U-box superfamily protein	Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size.  Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.	RING/U-box superfamily protein;(source:Araport11)
AT3G44340.2	protein_coding	clone eighty-four	homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions.	hypothetical protein;(source:Araport11)
AT3G10300.4	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G44540.2	protein_coding	fatty acid reductase 4	Encodes a member of the eight-member gene family encoding alcohol-forming fatty acyl-CoA reductases (FARs) identified in Arabidopsis thaliana.  Three of the FARs, FAR1 (At5g22500), FAR4 (At3g44540) and FAR5 (At3g44550), are shown to generate the fatty alcohols found in root, seed coat, and wound-induced leaf tissue. The mRNA is cell-to-cell mobile.	fatty acid reductase 4;(source:Araport11)
AT3G16420.3	protein_coding	PYK10-binding protein 1	The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular  chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests. The mRNA is cell-to-cell mobile.	PYK10-binding protein 1;(source:Araport11)
AT3G16400.2	protein_coding	nitrile specifier protein 1	Encodes a nitrile-specifier protein NSP1 responsible for constitutive and herbivore-induced simple nitrile formation in rosette leaves. NSP1 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation. The mRNA is cell-to-cell mobile.	nitrile specifier protein 1;(source:Araport11)
AT3G16470.2	protein_coding	Mannose-binding lectin superfamily protein	Encodes a JA-responsive gene that coordinates with GRP7 in shaping plant development through the regulation of RNA processing in Arabidopsis. AtJAC1 interacts with RNA binding protein GRP7 specifically in the cytoplasm to regulate its nucleocytoplasmic distribution.	Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G16450.3	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G05165.3	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G10450.2	protein_coding	serine carboxypeptidase-like 7		serine carboxypeptidase-like 7;(source:Araport11)
AT3G26932.2	protein_coding	dsRNA-binding protein 3		dsRNA-binding protein 3;(source:Araport11)
AT3G55770.3	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT3G55770.2	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT3G55770.4	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT3G55770.5	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT3G26744.4	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. It also binds to and inhibits the expression of ABI3. Mutants are defective in cold-regulated gene expression and ABA signaling druing seed germination.. Cold stress triggers protein degradation of nuclear GFPICE1  protein, and the RING finger protein HOS1 is required.  Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance. Together with ZOU, ICE1 determines primary seed dormancy depth independently of their joint role in endosperm development.ICE1 interacts with ABI5. Also members of the DELLA family, which repress ICE1 function.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G26744.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. It also binds to and inhibits the expression of ABI3. Mutants are defective in cold-regulated gene expression and ABA signaling druing seed germination.. Cold stress triggers protein degradation of nuclear GFPICE1  protein, and the RING finger protein HOS1 is required.  Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance. Together with ZOU, ICE1 determines primary seed dormancy depth independently of their joint role in endosperm development.ICE1 interacts with ABI5. Also members of the DELLA family, which repress ICE1 function.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G04910.2	protein_coding	with no lysine (K) kinase 1	Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm.	with no lysine (K) kinase 1;(source:Araport11)
AT3G61560.2	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G61710.3	protein_coding	AUTOPHAGY 6	Encodes autophagy protein 6 (ATG6), required for pollen germination and plant development.	AUTOPHAGY 6;(source:Araport11)
AT3G26890.3	protein_coding			meiosis chromosome segregation family protein;(source:Araport11)
AT3G26910.2	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G21465.2	protein_coding			adenylyl cyclase;(source:Araport11)
AT3G49390.2	protein_coding	CTC-interacting domain 10	RNA-binding protein, putative, RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196.Member of a family of PAB2 domain containing proteins.	CTC-interacting domain 10;(source:Araport11)
AT3G27300.2	protein_coding	glucose-6-phosphate dehydrogenase 5		glucose-6-phosphate dehydrogenase 5;(source:Araport11)
AT3G27320.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G27340.2	protein_coding			Myb domain protein;(source:Araport11)
AT3G56130.3	protein_coding	biotin/lipoyl attachment domain-containing protein		biotin/lipoyl attachment domain-containing protein;(source:Araport11)
AT3G56190.2	protein_coding	alpha-soluble NSF attachment protein 2	Encodes one of two alpha-SNAPs (soluble NSF attachment protein) in Arabidopsis	alpha-soluble NSF attachment protein 2;(source:Araport11)
AT3G49290.2	protein_coding	ABL interactor-like protein 2	One of four ABI-like proteins.	ABL interactor-like protein 2;(source:Araport11)
AT3G21610.2	protein_coding	Acid phosphatase/vanadium-dependent haloperoxidase-related protein		Acid phosphatase/vanadium-dependent haloperoxidase-related protein;(source:Araport11)
AT3G05230.2	protein_coding	Signal peptidase subunit		Signal peptidase subunit;(source:Araport11)
AT3G16800.3	protein_coding	Protein phosphatase 2C family protein	EGR3 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress, EGR3 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT3G50210.3	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G57020.2	protein_coding	Calcium-dependent phosphotriesterase superfamily protein		Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT3G28070.3	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G45240.2	protein_coding	geminivirus rep interacting kinase 1	Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro. Involved in resistance to S. sclerotiorum, fungal sRNA target.	geminivirus rep interacting kinase 1;(source:Araport11)
AT3G50920.2	protein_coding	Phosphatidic acid phosphatase (PAP2) family protein	Encodes a phosphatidic acid phosphatase that can be detected in chloroplast membrane fractions. This gene (LPPepsilon1) and LPPepsilon2, appear to be less important for diacylglycerol formation in the plastids than LPPgamma.	Phosphatidic acid phosphatase (PAP2) family protein;(source:Araport11)
AT3G17440.2	protein_coding	novel plant snare 13	member of NPSN Gene Family	Putative plant snare 13;(source:Araport11)
AT3G17090.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G05480.2	protein_coding	cell cycle checkpoint control protein family	Involved in the regulation of DNA damage repair and homologous recombination.	cell cycle checkpoint control protein family;(source:Araport11)
AT3G10920.2	protein_coding	manganese superoxide dismutase 1	manganese superoxide dismutase (MSD1)	manganese superoxide dismutase 1;(source:Araport11)
AT3G61960.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G05380.2	protein_coding	DIRP ;Myb-like DNA-binding domain		ALWAYS EARLY 2;(source:Araport11)
AT3G22220.2	protein_coding	hAT transposon superfamily		hAT transposon superfamily;(source:Araport11)
AT3G56830.2	protein_coding	Protein of unknown function (DUF565)	Similar in sequence to NPQ6 and NPQ7, but loss of function mutant does not exhibit a nonphotochemical quenching phenotype.	YCF20-like protein (DUF565);(source:Araport11)
AT3G05750.2	protein_coding		Encodes a member of the TRM superfamily, that plays a role in preprophase band formation during plant cell division and controls the robustness of the orientation of that cell division.	serine-rich adhesin for platelets-like protein;(source:Araport11)
AT3G27580.2	protein_coding	Protein kinase superfamily protein	D6PK family kinase involved in pulse-induced phototropism but also for time-dependent second positive phototropism, and continuous light-induced hypocotyl phototropism.D6PKL3 is polarly localized within the plasma membrane. It is involved in pollen aperture formation. The protein is localized within distinct regions of the pollen plasma membrane and mutants are also defective in pollen aperture formation.	Protein kinase superfamily protein;(source:Araport11)
AT3G56510.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G56580.3	protein_coding	RING/U-box superfamily protein	Encodes a functional E3 ubiquitin ligase involved in the dehydration stress response and regulation of proline biosynthesis.	RING/U-box superfamily protein;(source:Araport11)
AT3G54440.2	protein_coding	glycoside hydrolase family 2 protein		glycoside hydrolase family 2 protein;(source:Araport11)
AT3G19860.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G19770.2	protein_coding	Vacuolar sorting protein 9 (VPS9) domain	Guanine nucleotide exchange factor VPS9a. Can activate all Rab5 members to GTP-bound  forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development.	Vacuolar sorting protein 9 (VPS9) domain-containing protein;(source:Araport11)
AT3G26510.5	protein_coding	Octicosapeptide/Phox/Bem1p family protein		Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT3G19470.2	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G54060.2	protein_coding			myosin-M heavy protein;(source:Araport11)
AT3G54320.3	protein_coding	Integrase-type DNA-binding superfamily protein	WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation. Splice form 3 is the major form expressed in seedlings.Mutations in the C terminal intrinsically disordered region increase the stability of WRI1 and lead to increased oil production.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G20290.2	protein_coding	EPS15 homology domain 1	Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520).	EPS15 homology domain 1;(source:Araport11)
AT3G14870.3	protein_coding	Plant protein of unknown function (DUF641)		hypothetical protein (DUF641);(source:Araport11)
AT3G14870.2	protein_coding	Plant protein of unknown function (DUF641)		hypothetical protein (DUF641);(source:Araport11)
AT3G14830.2	protein_coding			epstein-barr nuclear antigen;(source:Araport11)
AT3G20120.2	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 21		cytochrome P450, family 705, subfamily A, polypeptide 21;(source:Araport11)
AT3G49010.3	protein_coding	breast basic conserved 1	Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).	breast basic conserved 1;(source:Araport11)
AT3G14420.4	protein_coding	Aldolase-type TIM barrel family protein	Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance. The mRNA is cell-to-cell mobile.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G02750.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G02750.3	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT3G59350.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G02870.2	protein_coding	Inositol monophosphatase family protein	Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis.	Inositol monophosphatase family protein;(source:Araport11)
AT3G26020.2	protein_coding	Protein phosphatase 2A regulatory B subunit family protein	Encodes protein phosphatase 2A (PP2A) B'eta subunit.  Targeted to nucleus and cytosol.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT3G59430.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G02510.2	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G25800.2	protein_coding	protein phosphatase 2A  subunit A2	one of three genes encoding the protein phosphatase 2A regulatory subunit	protein phosphatase 2A subunit A2;(source:Araport11)
AT3G59770.2	protein_coding	sacI homology domain-containing protein / WW domain-containing protein	Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.	sacI homology domain-containing protein / WW domain-containing protein;(source:Araport11)
AT3G53740.3	protein_coding	Ribosomal protein L36e family protein		Ribosomal protein L36e family protein;(source:Araport11)
AT3G59820.2	protein_coding	LETM1-like protein		LETM1-like protein;(source:Araport11)
AT3G26440.2	protein_coding	Protein of unknown function (DUF707)		transmembrane protein, putative (DUF707);(source:Araport11)
AT3G59990.3	protein_coding	methionine aminopeptidase 2B	Encodes a MAP2 like methionine aminopeptidase	methionine aminopeptidase 2B;(source:Araport11)
AT3G59580.2	protein_coding	Plant regulator RWP-RK family protein		Plant regulator RWP-RK family protein;(source:Araport11)
AT3G03010.2	protein_coding	Peptidyl-tRNA hydrolase II (PTH2) family protein		Peptidyl-tRNA hydrolase II (PTH2) family protein;(source:Araport11)
AT3G03100.2	protein_coding	NADH:ubiquinone oxidoreductase, 17.2kDa subunit		NADH:ubiquinone oxidoreductase, 17.2kDa subunit;(source:Araport11)
AT3G53710.2	protein_coding	ARF-GAP domain 6	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	ARF-GAP domain 6;(source:Araport11)
AT3G20920.2	protein_coding	translocation protein-related	Encodes an endoplasmic reticulum localized protein with similarity to yeast Sec62p. Mutants display growth defects and significantly reduced fertility. AtSec62 does not complement the thermosensitive phenotype of yeast Sec62 mutants.	translocation protein-like protein;(source:Araport11)
AT3G20810.3	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	JMJD5 encodes a protein which contains  a jumonji-C (jmjC) domain. jmjd5 mutant plants have a short-period circadian phenotype. JMJD5 has histone demethylase activity and interacts with EFM to repress FT.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G55080.2	protein_coding	SET domain-containing protein		SET domain-containing protein;(source:Araport11)
AT3G60820.2	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	Encodes 20S proteasome beta subunit PBF1 (PBF1).	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT3G54780.3	protein_coding	Zinc finger (C3HC4-type RING finger) family protein		Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT3G54800.2	protein_coding	Pleckstrin homology (PH) and lipid-binding START domains-containing protein		Pleckstrin homology (PH) and lipid-binding START domains-containing protein;(source:Araport11)
AT3G04130.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G60930.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1);(source:TAIR10)
AT3G54910.2	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G15351.2	protein_coding			P53/DNA damage-regulated protein;(source:Araport11)
AT3G21110.2	protein_coding	purin 7	5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.	purin 7;(source:Araport11)
AT3G21100.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G20970.2	protein_coding	NFU domain protein 4	Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU5 than to NFU1,2, and 3. Targeted to the mitochondrion.	NFU domain protein 4;(source:Araport11)
AT3G15395.3	protein_coding			HrpN-interacting protein from malus protein;(source:Araport11)
AT3G15450.3	protein_coding	Aluminium induced protein with YGL and LRDR motifs		aluminum induced protein with YGL and LRDR motifs;(source:Araport11)
AT3G15450.2	protein_coding	Aluminium induced protein with YGL and LRDR motifs		aluminum induced protein with YGL and LRDR motifs;(source:Araport11)
AT3G54770.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a putative RNA binding protein that is localized in the nucleus and affects ABA-regulated seed germination of Arabidopsis.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G14990.3	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes a homolog of animal DJ-1 superfamily protein.  In the A. thaliana genome, three genes encoding close homologs of human DJ-1 were identified AT3G14990 (DJ1A), AT1G53280 (DJ1B) and AT4G34020 (DJ1C).  Among the three homologs, DJ1C is essential for chloroplast development and viability.  It exhibits glyoxalase activity towards glyoxal and methylglyoxal. The mRNA is cell-to-cell mobile.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT3G60510.2	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT3G60410.3	protein_coding	Protein of unknown function (DUF1639)		hypothetical protein (DUF1639);(source:Araport11)
AT3G03950.3	protein_coding	evolutionarily conserved C-terminal region 1	Physically interacts with CIPK1. Located in the nucleus.	evolutionarily conserved C-terminal region 1;(source:Araport11)
AT3G60600.3	protein_coding	vesicle associated protein	Encodes VAP27 (for Vesicle-Associated Protein).  VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals.  May be involved in vesicular transport to or from the ER.  Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2.	vesicle associated protein;(source:Araport11)
AT3G60600.2	protein_coding	vesicle associated protein	Encodes VAP27 (for Vesicle-Associated Protein).  VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals.  May be involved in vesicular transport to or from the ER.  Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2.	vesicle associated protein;(source:Araport11)
AT3G60130.2	protein_coding	beta glucosidase 16		beta glucosidase 16;(source:Araport11)
AT3G60260.3	protein_coding	ELMO/CED-12 family protein		ELMO/CED-12 family protein;(source:Araport11)
AT3G58130.2	protein_coding	N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein		N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein;(source:Araport11)
AT3G08510.2	protein_coding	phospholipase C 2	Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol.  It is involved in auxin biosynthesis and signaling, modulating development of both male and female gametophytes. It also regulates MAMP-triggered immunity by modulating ROS production.	phospholipase C 2;(source:Araport11)
AT3G24740.2	protein_coding	Protein of unknown function (DUF1644)		cellulose synthase, putative (DUF1644);(source:Araport11)
AT3G02065.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G58510.3	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT3G25290.2	protein_coding	Auxin-responsive family protein		Auxin-responsive family protein;(source:Araport11)
AT3G01910.2	protein_coding	sulfite oxidase	Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor.  It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum.  SO protein has been found in all parts of the plant. The plant SO combines its enzymatic  sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.	sulfite oxidase;(source:Araport11)
AT3G58270.2	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain		phospholipase-like protein (PEARLI 4) with TRAF-like domain protein;(source:Araport11)
AT3G25030.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G47200.2	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G18200.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G52600.2	protein_coding	cell wall invertase 2		cell wall invertase 2;(source:Araport11)
AT3G17950.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G46980.3	protein_coding	phosphate transporter 4;3	Encodes an inorganic phosphate transporter (PHT4;3).	phosphate transporter 4;(source:Araport11)
AT3G52640.3	protein_coding	Zn-dependent exopeptidases superfamily protein	Encodes a gamma-secretase subunit.  Associates with other subunits in intracellular membrane compartments.	Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT3G52660.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G18140.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes LST8-1, involved in regulating amino acid accumulation and the synthesis of myo-inositol and raffinose during plant adaptation to long days.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G07650.3	protein_coding	CONSTANS-like 9	This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO. The mRNA is cell-to-cell mobile.	CONSTANS-like 9;(source:Araport11)
AT3G07565.3	protein_coding	Protein of unknown function (DUF3755)		histone H2A deubiquitinase (DUF3755);(source:Araport11)
AT3G07565.2	protein_coding	Protein of unknown function (DUF3755)		histone H2A deubiquitinase (DUF3755);(source:Araport11)
AT3G13430.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G47370.3	protein_coding	Ribosomal protein S10p/S20e family protein		Ribosomal protein S10p/S20e family protein;(source:Araport11)
AT3G12990.2	protein_coding	ribonuclease PH45A	Encodes a 3'-5' exoribonuclease, partially redundant with CER7. Involved in epicuticular wax biosynthesis.	ribonuclease PH45A;(source:Araport11)
AT3G13030.2	protein_coding	hAT transposon superfamily protein		hAT transposon superfamily protein;(source:Araport11)
AT3G08780.2	protein_coding			BRISC complex subunit Abro1-like protein;(source:Araport11)
AT3G13920.2	protein_coding	eukaryotic translation initiation factor 4A1	eukaryotic translation initiation factor 4A-1	eukaryotic translation initiation factor 4A1;(source:Araport11)
AT3G48090.2	protein_coding	alpha/beta-Hydrolases superfamily protein	Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G30390.2	protein_coding	Transmembrane amino acid transporter family protein	Encodes a putative amino acid transporter.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT3G48070.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G59060.4	protein_coding	phytochrome interacting factor 3-like 6	Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.	phytochrome interacting factor 3-like 6;(source:Araport11)
AT3G59060.3	protein_coding	phytochrome interacting factor 3-like 6	Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.	phytochrome interacting factor 3-like 6;(source:Araport11)
AT3G53090.2	protein_coding	ubiquitin-protein ligase 7	encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.	ubiquitin-protein ligase 7;(source:Araport11)
AT3G59080.2	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G59090.3	protein_coding			tobamovirus multiplication protein;(source:Araport11)
AT3G59020.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G59000.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G25585.4	protein_coding	aminoalcoholphosphotransferase	aminoalcoholphosphotransferase (AAPT2)	aminoalcoholphosphotransferase;(source:Araport11)
AT3G25585.3	protein_coding	aminoalcoholphosphotransferase	aminoalcoholphosphotransferase (AAPT2)	aminoalcoholphosphotransferase;(source:Araport11)
AT3G18660.2	protein_coding	plant glycogenin-like starch initiation protein 1	Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.  Encodes a glucuronyltransferase responsible for the addition of GlcA residues onto xylan and for secondary wall deposition.	plant glycogenin-like starch initiation protein 1;(source:Araport11)
AT3G58900.3	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G58900.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G25530.2	protein_coding	glyoxylate reductase 1	Encodes gamma-hydroxybutyrate dehydrogenase (AtGHBDH).  Contains a NADP-binding domain.  GHBDH is proposed to function in oxidative stress tolerance.	glyoxylate reductase 1;(source:Araport11)
AT3G13460.3	protein_coding	evolutionarily conserved C-terminal region 2	Physically interacts with CIPK1.	evolutionarily conserved C-terminal region 2;(source:Araport11)
AT3G13460.4	protein_coding	evolutionarily conserved C-terminal region 2	Physically interacts with CIPK1.	evolutionarily conserved C-terminal region 2;(source:Araport11)
AT3G13445.2	protein_coding	TATA binding protein 1	TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complex	TATA binding protein 1;(source:Araport11)
AT3G13550.2	protein_coding	Ubiquitin-conjugating enzyme family protein	Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark.	Ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT3G19180.2	protein_coding	paralog of ARC6	Encodes a chloroplast division factor located in the plastid inner envelope with its N-terminus exposed to the stroma.  PARC6 influences FtsZ assembly and is required for recruitment of PDV1 during chloroplast division.	plastid division protein;(source:Araport11)
AT3G53570.4	protein_coding	FUS3-complementing gene 1	a  member of a CDC2-related kinase subfamily,  the LAMMER kinases. activates STE12-dependent functions in yeast.	serine/threonine-protein kinase AFC1;(source:Araport11)
AT3G47630.2	protein_coding			translocator assembly/maintenance protein;(source:Araport11)
AT3G18750.2	protein_coding	with no lysine (K) kinase 6	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 6;(source:Araport11)
AT3G53420.2	protein_coding	plasma membrane intrinsic protein 2A	a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev.   When expressed in yeast cells can conduct hydrogen peroxide into those cells.	plasma membrane intrinsic protein 2A;(source:Araport11)
AT3G18850.3	protein_coding	lysophosphatidyl acyltransferase 5		lysophosphatidyl acyltransferase 5;(source:Araport11)
AT3G53530.2	protein_coding	Chloroplast-targeted copper chaperone protein		Chloroplast-targeted copper chaperone protein;(source:Araport11)
AT3G61050.2	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	Encodes a novel transcriptional regulator, a calcium-dependent lipid-binding protein containing a C2 domain, that binds specifically to the promoter of THAS1 (thalianol synthase 1).  It can bind ceramide and is involved in drought and salt tolerance.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G09640.2	protein_coding	ascorbate peroxidase 2	Encodes a cytosolic ascorbate peroxidase APX2.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	ascorbate peroxidase 2;(source:Araport11)
AT3G15620.2	protein_coding	DNA photolyase family protein	Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.	DNA photolyase family protein;(source:Araport11)
AT3G09690.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G04630.3	protein_coding	WVD2-like 1	Member of a small gene family  which have a KLEEK domain which may be involved in  protein- protein interactions. Over expression of WDL1 results in abnormal root development.	WVD2-like 1;(source:Araport11)
AT3G04370.2	protein_coding	plasmodesmata-located protein 4	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	plasmodesmata-located protein 4;(source:Araport11)
AT3G04710.2	protein_coding	ankyrin repeat family protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	ankyrin repeat family protein;(source:Araport11)
AT3G15840.3	protein_coding	post-illumination chlorophyll fluorescence increase	Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.	post-illumination chlorophyll fluorescence increase;(source:Araport11)
AT3G15840.2	protein_coding	post-illumination chlorophyll fluorescence increase	Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.	post-illumination chlorophyll fluorescence increase;(source:Araport11)
AT3G15660.2	protein_coding	glutaredoxin 4		glutaredoxin 4;(source:Araport11)
AT3G43930.2	protein_coding	BRCT domain-containing DNA repair protein		BRCT domain-containing DNA repair protein;(source:Araport11)
AT3G43720.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G15950.2	protein_coding	DNA topoisomerase-related	Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants.  Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.	DNA topoisomerase-like protein;(source:Araport11)
AT3G26680.3	protein_coding	DNA repair metallo-beta-lactamase family protein	Involved in a SNM-dependent recombinational  repair process of oxidatively induced DNA damage.	DNA repair metallo-beta-lactamase family protein;(source:Araport11)
AT3G09600.2	protein_coding	Homeodomain-like superfamily protein	Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. Functions as a transcriptional activator of evening element containing clock genes. Involved in heat shock response.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G09920.2	protein_coding	phosphatidyl inositol monophosphate 5 kinase		phosphatidyl inositol monophosphate 5 kinase;(source:Araport11)
AT3G15770.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G09630.2	protein_coding	Ribosomal protein L4/L1 family		Ribosomal protein L4/L1 family;(source:Araport11)
AT3G04670.2	protein_coding	WRKY DNA-binding protein 39	member of WRKY Transcription Factor; Group II-d	WRKY DNA-binding protein 39;(source:Araport11)
AT3G27906.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G61897.1	miRNA_primary_transcript	MIR166/MIR166B; miRNA	Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCGGACCAGGCUUCAUUCCCC. Pri-mRNA coordinates for MIR166b (converted to TAIR10 based on PMID19304749): Chr3: 22921936-22923122 (forward), length: 1187 bp; exon coordinates: exon 1: 22921936 to 22922389, exon 2: 22922485 to 22922566, exon 3:  22922653  to 22923122; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR166b precursor;(source:Araport11)
AT3G61175.1	protein_coding	low-molecular-weight cysteine-rich 52	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 52;(source:Araport11)
AT3G20997.1	protein_coding	low-molecular-weight cysteine-rich 55	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 55;(source:Araport11)
AT3G12977.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	NAC transcription regulator.  Regulates endosperm cell expansion during germination.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT3G60966.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G05327.1	protein_coding	Cyclin family protein		Cyclin family protein;(source:Araport11)
AT3G11773.1	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT3G24615.1	small_nucleolar_rna	snoRNA	Encodes a Z43 snoRNA. Gb: AJ240080	snoRNA;(source:Araport11)
AT3G24513.1	protein_coding		Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT3G43505.1	protein_coding	low-molecular-weight cysteine-rich 30	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 30;(source:Araport11)
AT3G23165.1	protein_coding	low-molecular-weight cysteine-rich 42	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 42;(source:Araport11)
AT3G20557.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G30245.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of Defensin-like (DEFL) family protein;(source:Araport11)
AT3G04903.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT3G19184.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G61185.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	None;(source:Araport11)
AT3G55646.1	protein_coding			TPRXL;(source:Araport11)
AT3G23727.1	protein_coding	SCR-like 12	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 12;(source:Araport11)
AT3G25265.1	protein_coding	low-molecular-weight cysteine-rich 4	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 4;(source:Araport11)
AT3G45577.1	protein_coding	tRNA-intron endonucleases		tRNA-intron endonuclease;(source:Araport11)
AT3G24614.1	small_nucleolar_rna	snoRNA	Encodes a Z4 snoRNA. Gb: AJ240073	snoRNA;(source:Araport11)
AT3G24093.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT3G61172.1	protein_coding	low-molecular-weight cysteine-rich 8	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 8;(source:Araport11)
AT3G25597.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G05727.1	protein_coding	S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family	Encodes a defensin-like (DEFL) family protein.	S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family;(source:Araport11)
AT3G44326.1	protein_coding	F-box family protein	Cytokinin induced F-Box protein. Forms a unique F-Box family with AT2G27310 and AT2G36090. It is primarily expressed in the root.	F-box family protein;(source:Araport11)
AT3G24068.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G20993.1	protein_coding	low-molecular-weight cysteine-rich 56	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 56;(source:Araport11)
AT3G13882.1	protein_coding	Ribosomal protein L34		Ribosomal protein L34;(source:Araport11)
AT3G63375.1	miRNA_primary_transcript	MIR167B; miRNA	Encodes a microRNA that targets ARF family members ARF6 and ARF8.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAAGCUGCCAGCAUGAUCUA	microRNA ath-MIR167b precursor;(source:Araport11)
AT3G17155.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT3G55677.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G42179.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);contains InterPro domain Arabidopsis retrotransposon ORF-1 protein;(source:TAIR10)
AT3G01323.1	protein_coding	ECA1-like gametogenesis related family protein		ECA1-like gametogenesis related family protein;(source:Araport11)
AT3G04943.1	protein_coding	low-molecular-weight cysteine-rich 41	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 41;(source:Araport11)
AT3G27283.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	unknown protein;(source:Araport11)
AT3G43833.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G18217.1	miRNA_primary_transcript	MIR157C; miRNA	Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGACAGAAGAUAGAGAGCAC. Pri-mRNA coordinates for MIR157c (converted to TAIR10 based on PMID19304749): Chr3: 6244826-6243830 (reverse), length: 997 bp; exon coordinates: exon 1: 6244826 to 6244347, exon 2: 6244115 to 6243830; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR157c precursor;(source:Araport11)
AT3G13403.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT3G50925.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT3G24508.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT3G27503.1	protein_coding	SCR-like 19	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 19;(source:Araport11)
AT3G23167.1	protein_coding	low-molecular-weight cysteine-rich 39	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 39;(source:Araport11)
AT3G06985.1	protein_coding	low-molecular-weight cysteine-rich 44	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 44;(source:Araport11)
AT3G42542.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of low-molecular-weight cysteine-rich 47;(source:Araport11)
AT3G45093.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT3G43083.1	protein_coding	low-molecular-weight cysteine-rich 33	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 33;(source:Araport11)
AT3G23715.1	protein_coding	SCR-like 13	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 13;(source:Araport11)
AT3G23125.1	miRNA_primary_transcript	MIR173; miRNA	Encodes a microRNA that targets the TAS1 and TAS2 families of tasiRNA-generating transcripts.  Cleavage of TAS1 and TAS2 transcripts by miR173 initiates processing of these transcripts in a 21-nucleotide register.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUCGCUUGCAGAGAGAAAUCAC	microRNA ath-MIR173 precursor;(source:Araport11)
AT3G04545.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT3G51375.1	miRNA_primary_transcript	MIR171A; miRNA	Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAUUGAGCCGCGCCAAUAUC	microRNA ath-MIR171a precursor;(source:Araport11)
AT3G61182.1	protein_coding	low-molecular-weight cysteine-rich 54	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 54;(source:Araport11)
AT3G43863.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT3G61898.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G04945.1	protein_coding	low-molecular-weight cysteine-rich 18	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 18;(source:Araport11)
AT3G42473.1	protein_coding	low-molecular-weight cysteine-rich 47	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 47;(source:Araport11)
AT3G27831.1	protein_coding	Gamma-thionin family protein	Encodes a defensin-like (DEFL) family protein.	Gamma-thionin family protein;(source:Araport11)
AT3G42557.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of low-molecular-weight cysteine-rich 47;(source:Araport11)
AT3G48231.1	protein_coding	low-molecular-weight cysteine-rich 48	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 48;(source:Araport11)
AT3G13405.1	miRNA_primary_transcript	MIR169A; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CAGCCAAGGAUGACUUGCCGA	microRNA ath-MIR169a precursor;(source:Araport11)
AT3G05741.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G27835.1	protein_coding	Gamma-thionin family protein	Encodes a defensin-like (DEFL) family protein.	Gamma-thionin family protein;(source:Araport11)
AT3G12345.1	protein_coding			FKBP-type peptidyl-prolyl cis-trans isomerase;(source:Araport11)
AT3G10745.1	miRNA_primary_transcript	MIR158A; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCCCAAAUGUAGACAAAGCA. Pri-mRNA coordinates for MIR158a (converted to TAIR10 based on PMID19304749): Chr3: 3366553-3366019  (reverse), length: 535 bp; exon coordinates: exon 1: 3366553 to 3366303, exon 2: 3366185 to 3366019; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR158a precursor;(source:Araport11)
AT3G07005.1	protein_coding	low-molecular-weight cysteine-rich 43	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 43;(source:Araport11)
AT3G33187.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT3G10195.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT3G22886.1	miRNA_primary_transcript	MIR167A; miRNA	Encodes a microRNA that targets ARF family members ARF6 and ARF8. Essential for fertility of both ovules and anthers.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGAAGCUGCCAGCAUGAUCUA. Pri-mRNA coordinates for MIR167a (converted to TAIR10 based on PMID19304749): Chr3: 8108021-8108622 (forward), length: 602 bp; exon coordinates: exon 1: 8108021 to 8108622; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR167a precursor;(source:Araport11)
AT3G61177.1	protein_coding	low-molecular-weight cysteine-rich 53	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 53;(source:Araport11)
AT3G51171.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G13020.3	protein_coding	Protein kinase superfamily protein	Encodes a member of the cdc2+ family of protein kinases MHK.  Similar to the mak genes of rats.  mak encodes a protein kinase that may play a role in spermatogenesis.	Protein kinase superfamily protein;(source:Araport11)
AT4G40040.2	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT4G13460.2	protein_coding	SU(VAR)3-9 homolog 9	Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A plant line expressing an RNAi construct directed against  this gene has reduced agrobacterium-mediated tumor formation.	SU(VAR)3-9 homolog 9;(source:Araport11)
AT4G13450.2	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT4G29440.2	protein_coding	Regulator of Vps4 activity in the MVB pathway protein		Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT4G34860.2	protein_coding	Plant neutral invertase family protein		Plant neutral invertase family protein;(source:Araport11)
AT4G34680.2	protein_coding	GATA transcription factor 3	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 3;(source:Araport11)
AT4G23100.2	protein_coding	glutamate-cysteine ligase	Encodes the enzyme glutamate-cysteine ligase catalyzing the first, and rate-limiting, step of glutathione biosynthesis.  Required for cell proliferation at the root tip. Involved in susceptibility to the bacterial pathogen Pseudomonas syringae. Mutants are phytoalexin defective.	glutamate-cysteine ligase;(source:Araport11)
AT4G18140.2	protein_coding	SCP1-like small phosphatase 4b	Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).	SCP1-like small phosphatase 4b;(source:Araport11)
AT4G12790.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G39330.2	protein_coding	cinnamyl alcohol dehydrogenase 9		cinnamyl alcohol dehydrogenase 9;(source:Araport11)
AT4G18070.4	protein_coding			suppressor;(source:Araport11)
AT4G18070.3	protein_coding			suppressor;(source:Araport11)
AT4G17890.2	protein_coding	ARF-GAP domain 8	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	ARF-GAP domain 8;(source:Araport11)
AT4G23470.3	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT4G23570.3	protein_coding	phosphatase-related	Closely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly  expressed than AtSGT1. The N-terminal TPR domain of  AtSGT1a reduces the steady-state level of Arabidopsis SGT1  proteins whereas the same domain from AtSGT1b enhances  SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.	phosphatase-like protein;(source:Araport11)
AT4G23600.3	protein_coding	Tyrosine transaminase family protein	Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis.  mRNA levels are elevated in response to wounding.	Tyrosine transaminase family protein;(source:Araport11)
AT4G18975.2	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G05050.2	protein_coding	ubiquitin 11	polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14.  Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.	ubiquitin 11;(source:Araport11)
AT4G24380.2	protein_coding			dihydrofolate reductase;(source:Araport11)
AT4G08320.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G29810.2	protein_coding	MAP kinase kinase 2	encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2.	MAP kinase kinase 2;(source:Araport11)
AT4G29930.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G29540.2	protein_coding	bacterial transferase hexapeptide repeat-containing protein	Encodes a UDP-N-acetylglucosamine acyltransferase.	bacterial transferase hexapeptide repeat-containing protein;(source:Araport11)
AT4G35090.2	protein_coding	catalase 2	Encodes a peroxisomal catalase, highly expressed in bolts and leaves.  mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2  sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene.  Note that in Queval et al. (2007) Plant Journal, 52(4):640, SALK_057998 is named as cat2-1, SALK_076998 is named as cat2-2; in Bueso et al. (2007) Plant Journal, 52(6):1052, SALK_076998 is named as cat2-1. TAIR has adopted the nomenclature consistent with that in Bueso et al. (2007) after consultation with the authors: SALK_076998 (cat2-1), SALK_057998 (cat2-2).	catalase 2;(source:Araport11)
AT4G05040.3	protein_coding	ankyrin repeat family protein		ankyrin repeat family protein;(source:Araport11)
AT4G23980.2	protein_coding	auxin response factor 9	Encodes auxin response factor 9 (ARF9). The mRNA is cell-to-cell mobile.	auxin response factor 9;(source:Araport11)
AT4G08160.2	protein_coding	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein;(source:Araport11)
AT4G28420.2	protein_coding	Tyrosine transaminase family protein		Tyrosine transaminase family protein;(source:Araport11)
AT4G03210.2	protein_coding	xyloglucan endotransglucosylase/hydrolase 9	encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.	xyloglucan endotransglucosylase/hydrolase 9;(source:Araport11)
AT4G33580.2	protein_coding	beta carbonic anhydrase 5		beta carbonic anhydrase 5;(source:Araport11)
AT4G28085.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G28070.2	protein_coding	AFG1-like ATPase family protein		AFG1-like ATPase family protein;(source:Araport11)
AT4G22340.3	protein_coding	cytidinediphosphate diacylglycerol synthase 2		cytidinediphosphate diacylglycerol synthase 2;(source:Araport11)
AT4G22540.3	protein_coding	OSBP(oxysterol binding protein)-related protein 2A		OSBP(oxysterol binding protein)-related protein 2A;(source:Araport11)
AT4G22140.2	protein_coding	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein	Encoding a chromatin remodeling  factor that regulates flowering time.	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT4G22235.2	protein_coding	Arabidopsis defensin-like protein	Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT4G32850.7	protein_coding	nuclear poly(a) polymerase	Encodes a nuclear poly(A) polymerase. Located in the nucleus. The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT4G32850.8	protein_coding	nuclear poly(a) polymerase	Encodes a nuclear poly(A) polymerase. Located in the nucleus. The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT4G16740.2	protein_coding	terpene synthase 03	Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect <i>Plutella xylostella</i>. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.	terpene synthase 03;(source:Araport11)
AT4G11350.2	protein_coding	Protein of unknown function (DUF604)		transferring glycosyl group transferase (DUF604);(source:Araport11)
AT4G33355.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G28040.4	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G28040.3	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G28030.2	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT4G33080.2	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein		AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT4G33300.2	protein_coding	ADR1-like 1	Encodes a member of the ADR1 family nucleotide-binding leucine-rich repeat (NB-LRR) immune receptors.	ADR1-like 1;(source:Araport11)
AT4G28820.2	protein_coding	HIT-type Zinc finger family protein		HIT-type Zinc finger family protein;(source:Araport11)
AT4G34230.2	protein_coding	cinnamyl alcohol dehydrogenase 5	Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.	cinnamyl alcohol dehydrogenase 5;(source:Araport11)
AT4G34020.2	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes a homolog of animal DJ-1 superfamily protein.  In the A. thaliana genome, three genes encoding close homologs of human DJ-1 were identified AT3G14990 (DJ1A), AT1G53280 (DJ1B) and AT4G34020 (DJ1C).  Among the three homologs, DJ1C is essential for chloroplast development and viability.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT4G34000.3	protein_coding	abscisic acid responsive elements-binding factor 3	Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.	abscisic acid responsive elements-binding factor 3;(source:Araport11)
AT4G29070.2	protein_coding	Phospholipase A2 family protein		Phospholipase A2 family protein;(source:Araport11)
AT4G29060.2	protein_coding	elongation factor Ts family protein		elongation factor Ts family protein;(source:Araport11)
AT4G38510.4	protein_coding	ATPase, V1 complex, subunit B protein	One of three genes encoding the vacuolar ATP synthase subunit B1.  The protein binds to and co-localizes with F-actin, bundles F-actin to form higher-order structure, and stabilizes actin filaments in vitro.	ATPase, V1 complex, subunit B protein;(source:Araport11)
AT4G38510.3	protein_coding	ATPase, V1 complex, subunit B protein	One of three genes encoding the vacuolar ATP synthase subunit B1.  The protein binds to and co-localizes with F-actin, bundles F-actin to form higher-order structure, and stabilizes actin filaments in vitro.	ATPase, V1 complex, subunit B protein;(source:Araport11)
AT4G38660.2	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT4G16990.4	protein_coding	disease resistance protein (TIR-NBS class), putative		disease resistance protein (TIR-NBS class);(source:Araport11)
AT4G17310.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G22880.2	protein_coding	leucoanthocyanidin dioxygenase	encodes leucoanthocyanidin dioxygenase, which is involved in proanthocyanin biosynthesis. Mutant analysis suggests that this gene is also involved in vacuole formation.	leucoanthocyanidin dioxygenase;(source:Araport11)
AT4G17620.2	protein_coding	glycine-rich protein	NAD-RNA decapping enzyme.Mediates the connection between  RNA turnover and retrograde chloroplast-to-nucleus signaling.	glycine-rich protein;(source:Araport11)
AT4G12400.2	protein_coding	stress-inducible protein, putative	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	stress-inducible protein;(source:Araport11)
AT4G38960.2	protein_coding	B-box type zinc finger family protein	BBX19 is a B-box containing transcriptional regulator involved in photomporphogenesis and flowering.	B-box type zinc finger family protein;(source:Araport11)
AT4G38900.3	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT4G17760.2	protein_coding	damaged DNA binding;exodeoxyribonuclease IIIs		PCNA domain-containing protein;(source:Araport11)
AT4G31600.2	protein_coding	UDP-N-acetylglucosamine (UAA) transporter family	Encodes a Golgi-localized UDP–glucose/UDP–galactose transporter that affects lateral root emergence.	UDP-N-acetylglucosamine (UAA) transporter family;(source:Araport11)
AT4G31340.2	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT4G31300.2	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	Encodes 20S proteasome subunit PBA1 (PBA1). PBA1 acts as a plant caspase-3-like enzyme.	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT4G10120.2	protein_coding	Sucrose-phosphate synthase family protein	Encodes a protein with putative sucrose-phosphate synthase activity.	Sucrose-phosphate synthase family protein;(source:Araport11)
AT4G31390.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G31430.3	protein_coding		Encodes a plant-specific protein that physically interacts with CRWN1 and its homolog CRWN4 and localizes at the inner nuclear membrane. KAKU4 deforms the nuclear envelope in a dose-dependent manner, in association with nuclear membrane invagination and stack formation.	flocculation protein;(source:Araport11)
AT4G26530.2	protein_coding	Aldolase superfamily protein		Aldolase superfamily protein;(source:Araport11)
AT4G06634.2	protein_coding	zinc finger (C2H2 type) family protein	Encodes an ABA responsive C2H2-type zinc finger transcription factor with both transcriptional repression and activation domains, that binds a G-rich, 11-bp DNA-binding motif. YY1 binds to the promoter of ABR1 and disruption represses ABA- and salt-induced ABR1 expression.	zinc finger (C2H2 type) family protein;(source:Araport11)
AT4G26630.2	protein_coding	DEK domain-containing chromatin associated protein	Encodes a chromatin-associated protein that specifically binds histones H3 and H4 and contributes to modulation of Arabidopsis chromatin structure and function.	DEK domain-containing chromatin associated protein;(source:Araport11)
AT4G26650.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G31800.2	protein_coding	WRKY DNA-binding protein 18	Pathogen-induced transcription factor. Binds W-box sequences  in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18  enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both  P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. The mRNA is cell-to-cell mobile.	WRKY DNA-binding protein 18;(source:Araport11)
AT4G37090.2	protein_coding			UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase;(source:Araport11)
AT4G14740.3	protein_coding	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region	FORKED-LIKE family member, part of Group 1 (FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT4G37010.2	protein_coding	centrin 2	Encodes a member of the Centrin family. Mutants are hypersensitive to UV and prone to UV induced DNA damage. Based on sequence similarity and mutant phenotype CEN2 is thought to be involved in nucelotide excision repair/DNA repair.	centrin 2;(source:Araport11)
AT4G14710.2	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT4G37190.2	protein_coding			plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein;(source:Araport11)
AT4G21280.2	protein_coding	photosystem II subunit QA	Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.	photosystem II subunit QA;(source:Araport11)
AT4G01680.2	protein_coding	myb domain protein 55	Encodes a putative transcription factor (MYB55).	myb domain protein 55;(source:Araport11)
AT4G21210.2	protein_coding	PPDK regulatory protein	Encodes a PPDK regulatory protein that has both protein kinase and protein phosphatase activities towards PPDK (pyruvate orthophosphate dikinase).	PPDK regulatory protein;(source:Araport11)
AT4G36870.2	protein_coding	BEL1-like homeodomain 2	Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw1 may act redundantly to repress BP in leaves.	BEL1-like homeodomain 2;(source:Araport11)
AT4G37550.2	protein_coding	Acetamidase/Formamidase family protein		Acetamidase/Formamidase family protein;(source:Araport11)
AT4G37630.2	protein_coding	cyclin d5;1	core cell cycle genes; a quantitative trait gene for endoreduplication.	cyclin d5;(source:Araport11)
AT4G10610.2	protein_coding	CTC-interacting domain 12	RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif).	CTC-interacting domain 12;(source:Araport11)
AT4G31990.3	protein_coding	aspartate aminotransferase 5	Encodes a plastid-localized aspartate aminotransferase.  Does not display any PAT (glutamate/aspartate-prephenate aminotransferase) activity even in the presence of a high concentration of prephenate.	aspartate aminotransferase 5;(source:Araport11)
AT4G10360.2	protein_coding	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein		TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT4G32180.2	protein_coding	pantothenate kinase 2	Encodes a protein with pantothenate kinase activity.	pantothenate kinase 2;(source:Araport11)
AT4G32250.3	protein_coding	Protein kinase superfamily protein	Encodes a component of the TOC machinery that phosphorylates import receptors, supports pre-protein import, and contributes to efficient chloroplast biogenesis.	Protein kinase superfamily protein;(source:Araport11)
AT4G32285.2	protein_coding	ENTH/ANTH/VHS superfamily protein	Putative clathrin assembly protein, component of TPLATE complex that functions in clathrin-mediated endocytosis.	ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT4G21750.2	protein_coding	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein	Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny.  Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression.  Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein;(source:Araport11)
AT4G02130.3	protein_coding	galacturonosyltransferase 6	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 6;(source:Araport11)
AT4G21540.2	protein_coding	sphingosine kinase 1	Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination.	sphingosine kinase 1;(source:Araport11)
AT4G21540.3	protein_coding	sphingosine kinase 1	Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination.	sphingosine kinase 1;(source:Araport11)
AT4G26700.2	protein_coding	fimbrin 1	Encodes a member of the fimbrin family. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	fimbrin 1;(source:Araport11)
AT4G26700.3	protein_coding	fimbrin 1	Encodes a member of the fimbrin family. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	fimbrin 1;(source:Araport11)
AT4G21580.2	protein_coding	oxidoreductase, zinc-binding dehydrogenase family protein		oxidoreductase, zinc-binding dehydrogenase family protein;(source:Araport11)
AT4G37980.2	protein_coding	elicitor-activated gene 3-1	NADPH-dependent cinnamaldehyde and hexenal reductase involved in the production of green leaf volitile compounds.	cinnamyl alcohol dehydrogenase 7;(source:Araport11)
AT4G15530.3	protein_coding	pyruvate orthophosphate dikinase	The product of this shorter transcript (no chloroplast targeting sequence) was shown to accumulate in the cytosol, whereas the longest transcript was found in the chloroplast. They were also found in slightly different tissues.	pyruvate orthophosphate dikinase;(source:Araport11)
AT4G15510.3	protein_coding	Photosystem II reaction center PsbP family protein	A nuclear-encoded thylakoid lumenal protein that is associated with photosystem I (PSI) but is not an integral subunit of PSI.  It is an PSI assembly factor that assists the proper folding and integration of PsaB and PsaA into the thylakoid membrane. It is involved in the assembly of PSI reaction center heterodimer core.	Photosystem II reaction center PsbP family protein;(source:Araport11)
AT4G38150.2	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G01600.2	protein_coding	GRAM domain family protein		GRAM domain family protein;(source:Araport11)
AT4G20380.4	protein_coding	LSD1 zinc finger family protein	LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge	LSD1 zinc finger family protein;(source:Araport11)
AT4G20380.5	protein_coding	LSD1 zinc finger family protein	LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge	LSD1 zinc finger family protein;(source:Araport11)
AT4G20380.6	protein_coding	LSD1 zinc finger family protein	LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge	LSD1 zinc finger family protein;(source:Araport11)
AT4G20400.2	protein_coding	JUMONJI 14	Encodes a histone H3K4 demethylase repressing floral transition.Coordinates and structure features have been deposited in the RCSB Protein Data Bank with the accession codes 5YKN (JMJ14CD) and 5YKO(JMJ14CD-NOG-H3K4em3 complex). Glu285 and Glu516 contribute to the recognition of H3R2. Asp312 contributes to the recognition of H3Q5. Phe171 and Val363 contribute to the recognition of H3A7. Ser290, Trp296, and Tyr298 contribute to the recognition of H3K4me3 (PMID:29233856).	JUMONJI 14;(source:Araport11)
AT4G20260.3	protein_coding	plasma-membrane associated cation-binding protein 1	Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and  PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels. The mRNA is cell-to-cell mobile.	plasma-membrane associated cation-binding protein 1;(source:Araport11)
AT4G20260.4	protein_coding	plasma-membrane associated cation-binding protein 1	Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and  PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels. The mRNA is cell-to-cell mobile.	plasma-membrane associated cation-binding protein 1;(source:Araport11)
AT4G19880.2	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT4G19880.3	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT4G25360.2	protein_coding	TRICHOME BIREFRINGENCE-LIKE 18	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 18;(source:Araport11)
AT4G00355.4	protein_coding		Encodes an Atg8-interacting protein that is partially associated with the ER during favorable growth conditions and becomes mainly associated with a spherical compartment that dynamically moves along the ER network.	mesoderm induction early response protein;(source:Araport11)
AT4G20010.2	protein_coding	plastid transcriptionally active 9	Organellar Single-stranded DNA Binding protein. Decreases MMEJ on long ssDNA templates.	plastid transcriptionally active 9;(source:Araport11)
AT4G36010.2	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT4G13640.2	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT4G13940.2	protein_coding	S-adenosyl-L-homocysteine hydrolase	Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. The mRNA is cell-to-cell mobile.	S-adenosyl-L-homocysteine hydrolase;(source:Araport11)
AT4G13940.3	protein_coding	S-adenosyl-L-homocysteine hydrolase	Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. The mRNA is cell-to-cell mobile.	S-adenosyl-L-homocysteine hydrolase;(source:Araport11)
AT4G36195.2	protein_coding	Serine carboxypeptidase S28 family protein		Serine carboxypeptidase S28 family protein;(source:Araport11)
AT4G36090.2	protein_coding	oxidoreductase, 2OG-Fe(II) oxygenase family protein		oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT4G36090.3	protein_coding	oxidoreductase, 2OG-Fe(II) oxygenase family protein		oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT4G00335.3	protein_coding	RING-H2 finger B1A		RING-H2 finger B1A;(source:Araport11)
AT4G08870.2	protein_coding	Arginase/deacetylase superfamily protein	Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.  It is involved in the defense response to B.cinerea.	Arginase/deacetylase superfamily protein;(source:Araport11)
AT4G24800.2	protein_coding	MA3 domain-containing protein		MA3 domain-containing protein;(source:Araport11)
AT4G24810.2	protein_coding	Protein kinase superfamily protein	similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)	Protein kinase superfamily protein;(source:Araport11)
AT4G05400.2	protein_coding	copper ion binding		copper ion binding protein;(source:Araport11)
AT4G08690.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT4G25100.4	protein_coding	Fe superoxide dismutase 1	Fe-superoxide dismutase	Fe superoxide dismutase 1;(source:Araport11)
AT4G25110.2	protein_coding	metacaspase 2	Encodes a type I metacaspase. Two Arabidopsis metacaspases, AT1G02170 (MC1) and AT4G25110 (MC2)  antagonistically control programmed cell death in Arabidopsis. MC1 is a positive regulator of cell death and requires conserved caspase-like putative catalytic residues for its function. MC2 negatively regulates cell death. This function is independent of the putative catalytic residues.  A third type I Arabidopsis metacaspase is MC3 (AT5g64240).	metacaspase 2;(source:Araport11)
AT4G19680.2	protein_coding	iron regulated transporter 2	encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.	iron regulated transporter 2;(source:Araport11)
AT4G00310.2	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT4G36480.2	protein_coding	long-chain base1	Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion.	long-chain base1;(source:Araport11)
AT4G20440.3	protein_coding	small nuclear ribonucleoprotein associated protein B		small nuclear ribonucleoprotein associated protein B;(source:Araport11)
AT4G25740.2	protein_coding	RNA binding Plectin/S10 domain-containing protein		RNA binding Plectin/S10 domain-containing protein;(source:Araport11)
AT4G01060.3	protein_coding	CAPRICE-like MYB3	Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.	CAPRICE-like MYB3;(source:Araport11)
AT4G25880.3	protein_coding	pumilio 6	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 6;(source:Araport11)
AT4G25720.3	protein_coding	glutaminyl cyclase	This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.	glutaminyl cyclase;(source:Araport11)
AT4G25720.2	protein_coding	glutaminyl cyclase	This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus, but, based on in vitro assays (using a truncated form of the protein that lacks a signal peptide), the protein encoded by this gene model does not have enzymatic activity (Schilling 2007).	glutaminyl cyclase;(source:Araport11)
AT4G25700.2	protein_coding	beta-hydroxylase 1	Converts beta-carotene to zeaxanthin via cryptoxanthin.	beta-hydroxylase 1;(source:Araport11)
AT4G00830.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a heterogeneous nuclear ribonucleoprotein (hnRNP-Q) that is involved in the plant innate immune response and may function as a suppressor of cell-autonomous immunity.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G31170.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G20980.2	protein_coding	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)		Eukaryotic translation initiation factor 3 subunit 7 (eIF-3);(source:Araport11)
AT4G20980.3	protein_coding	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)		Eukaryotic translation initiation factor 3 subunit 7 (eIF-3);(source:Araport11)
AT4G01590.2	protein_coding			DNA-directed RNA polymerase III subunit;(source:Araport11)
AT4G21090.3	protein_coding	MITOCHONDRIAL  FERREDOXIN 2		MITOCHONDRIAL FERREDOXIN 2;(source:Araport11)
AT4G01280.2	protein_coding	Homeodomain-like superfamily protein	RVE5 is one of eleven homologous MYB-like transcription factors in Arabidopsis and a member of the RVE8 clade. Plays a minor role in clock regulation.	Homeodomain-like superfamily protein;(source:Araport11)
AT4G05590.2	protein_coding		Encodes NRGA1, a putative mitochondrial pyruvate carrier that mediates ABA regulation of guard cell ion channels and drought stress responses.	pyruvate carrier-like protein;(source:Araport11)
AT4G30480.3	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808).  Interacts with Hsp90/Hsp70 as co-chaperone.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G14270.2	protein_coding		Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.	polyadenylate-binding protein interacting protein;(source:Araport11)
AT4G14240.2	protein_coding	CBS domain-containing protein with a domain of unknown function (DUF21)		CBS domain protein with a domain protein (DUF21);(source:Araport11)
AT4G14360.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G25434.2	protein_coding	nudix hydrolase homolog 10		nudix hydrolase homolog 10;(source:Araport11)
AT4G25450.2	protein_coding	non-intrinsic ABC protein 8	member of NAP subfamily	non-intrinsic ABC protein 8;(source:Araport11)
AT4G27690.2	protein_coding	vacuolar protein sorting 26B		vacuolar protein sorting 26B;(source:Araport11)
AT4G27440.2	protein_coding	protochlorophyllide oxidoreductase B	light-dependent NADPH:protochlorophyllide oxidoreductase B The mRNA is cell-to-cell mobile.	protochlorophyllide oxidoreductase B;(source:Araport11)
AT4G32590.4	protein_coding	2Fe-2S ferredoxin-like superfamily protein		2Fe-2S ferredoxin-like superfamily protein;(source:Araport11)
AT4G32660.3	protein_coding	Protein kinase superfamily protein	Encodes protein kinase AME3.	Protein kinase superfamily protein;(source:Araport11)
AT4G27100.2	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT4G27050.3	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G32560.3	protein_coding	paramyosin-related		paramyosin-like protein;(source:Araport11)
AT4G26965.2	protein_coding	NADH:ubiquinone oxidoreductase, 17.2kDa subunit		NADH:ubiquinone oxidoreductase, 17.2kDa subunit;(source:Araport11)
AT4G32720.2	protein_coding	La protein 1	Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins.  Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity.  Has RNA binding activity.  Required for normal ribosome biogenesis and embryogenesis.	La protein 1;(source:Araport11)
AT4G02590.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G03050.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. AOP3 is transcriptionally silent in leaf tissues of ecotype Col.The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.	2-oxoglutarate-dependent dioxygenase;(source:Araport11)
AT4G02570.2	protein_coding	cullin 1	Encodes a cullin that is a component of  SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl.  Heterozygotes display a variety of phenotypes consistent with impaired auxin response.	cullin 1;(source:Araport11)
AT4G02570.3	protein_coding	cullin 1	Encodes a cullin that is a component of  SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl.  Heterozygotes display a variety of phenotypes consistent with impaired auxin response.	cullin 1;(source:Araport11)
AT4G02600.2	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO1 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and in papillae, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT4G02550.3	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT4G32650.3	protein_coding	potassium channel in Arabidopsis thaliana 3	Encodes KAT3, a member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. The Shaker family K+ ion channels include five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inwardly rectifying conductance): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).	potassium channel protein;(source:Araport11)
AT4G14147.1	protein_coding	protein binding	actin-related protein 2/3 complex 34kDa subunit family / arp2/3 complex 34kDa subunit family	binding protein;(source:Araport11)
AT4G08875.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein. Pollen tube emergence accelerator that favors conspecific pollen over pollen from other species and thus promotes reproductive isolation.	Putative membrane lipoprotein;(source:Araport11)
AT4G20235.1	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 28		cytochrome P450, family 71, subfamily A, polypeptide 28;(source:Araport11)
AT4G08028.1	protein_coding	Molecular chaperone Hsp40/DnaJ family protein	Encodes a defensin-like (DEFL) family protein.	Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT4G37925.1	protein_coding	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex	Encodes subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex;(source:Araport11)
AT4G11393.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT4G29305.1	protein_coding	low-molecular-weight cysteine-rich 25	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 25;(source:Araport11)
AT4G10595.1	protein_coding	low-molecular-weight cysteine-rich 2	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 2;(source:Araport11)
AT4G17718.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT4G18823.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT4G19395.1	miRNA_primary_transcript	MIR168/MIR168A; miRNA	Encodes a microRNA that targets AGO1.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCGCUUGGUGCAGGUCGGGAA.  MIR168a is highly expressed and predominantly produces a 21-nt miR168 species. By contrast, MIR168b is expressed at low levels and produces an equal amount of 21- and 22-nt miR168 species. Only the 21-nt miR168 is preferentially stabilized by AGO1, and consequently, the accumulation of the 22-nt but not the 21-nt miR168 is reduced when DCL1 activity is impaired. mir168a mutants with strongly reduced levels of 21-nt miR168 are viable but exhibit developmental defects, particularly during environmentally challenging conditions.	microRNA ath-MIR168a precursor;(source:Araport11)
AT4G15248.1	protein_coding	B-box type zinc finger family protein		B-box type zinc finger family protein;(source:Araport11)
AT4G29273.1	protein_coding	low-molecular-weight cysteine-rich 23	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 23;(source:Araport11)
AT4G08868.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G39403.1	protein_coding	polaris	Encodes a 36 amino acid polypeptide that is necessary for correct responses to cytokinins and auxins, correct cell expansion in the root, and for vascular patterning in the leaf. Mutation of PLS results in an enhanced ethylene-response phenotype, defective auxin transport and homeostasis, and altered microtubule sensitivity to inhibitors.	polari;(source:Araport11)
AT4G09644.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	None;(source:Araport11)
AT4G30662.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G39490.1	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 10	member of CYP96A	cytochrome P450, family 96, subfamily A, polypeptide 10;(source:Araport11)
AT4G39917.1	protein_coding	low-molecular-weight cysteine-rich 45	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 45;(source:Araport11)
AT4G08039.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT4G14723.1	protein_coding			EPIDERMAL PATTERNING FACTOR-like protein;(source:Araport11)
AT4G10457.1	protein_coding	SCR-like 1	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 1;(source:Araport11)
AT4G00356.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of Defensin-like (DEFL) family protein;(source:Araport11)
AT4G32717.1	protein_coding	SCR-like 24	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 24;(source:Araport11)
AT4G10613.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT4G30972.1	miRNA_primary_transcript	MIR156B; miRNA	Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC	microRNA ath-MIR156b precursor;(source:Araport11)
AT4G19035.1	protein_coding	low-molecular-weight cysteine-rich 7	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 7;(source:Araport11)
AT4G28556.1	protein_coding	PAK-box/P21-Rho-binding family protein	Encodes RIC7, the downstream effector of active Rop2 GTPase.	PAK-box/P21-Rho-binding family protein;(source:Araport11)
AT4G16162.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G29033.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT4G10603.1	protein_coding	S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family	Encodes a defensin-like (DEFL) family protein.	S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family;(source:Araport11)
AT4G04614.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G10767.1	protein_coding	SCR-like 21	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 21;(source:Araport11)
AT4G23713.1	miRNA_primary_transcript	MIR319/MIR319a; miRNA	Encodes a microRNA that targets several TCP family members controlling leaf development. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGACUGAAGGGAGCUCCCU. The miR319a pri-mRNA also encodes a regulatory peptide miPEP319a (AT4G23712) that regulates accumulation of its own miRNA.	microRNA ath-MIR319a precursor;(source:Araport11)
AT4G30072.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of low-molecular-weight cysteine-rich 61;(source:Araport11)
AT4G14276.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT4G10115.1	protein_coding	SCR-like 20	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 20;(source:Araport11)
AT4G14785.1	protein_coding	SCR-like 23	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 23;(source:Araport11)
AT4G11485.1	protein_coding	low-molecular-weight cysteine-rich 11	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 11;(source:Araport11)
AT4G09647.1	protein_coding	S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family	Encodes a defensin-like (DEFL) family protein.	S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family;(source:Araport11)
AT4G18197.1	protein_coding	purine permease 7	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. The mRNA is cell-to-cell mobile.	purine permease 7;(source:Araport11)
AT4G08869.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein. Pollen tube emergence accelerator that favors conspecific pollen over pollen from other species and thus promotes reproductive isolation.	Putative membrane lipoprotein;(source:Araport11)
AT4G32714.1	protein_coding	SCR-like 25	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 25;(source:Araport11)
AT4G08485.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT4G13968.1	protein_coding	Protein of unknown function (PD694200)	Encodes a defensin-like (DEFL) family protein.	Protein of unknown function (PD694200);(source:Araport11)
AT4G09987.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of low-molecular-weight cysteine-rich 34;(source:Araport11)
AT4G14104.1	protein_coding			capsid-like protein;(source:Araport11)
AT4G08602.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1);(source:TAIR10)
AT4G27745.1	protein_coding	Yippee family putative zinc-binding protein		Yippee family putative zinc-binding protein;(source:Araport11)
AT4G17788.1	miRNA_primary_transcript	MIR160/MIR160B; miRNA	Encodes a microRNA that targets several ARF family members (ARF10, ARF16, ARF17). MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCUGGCUCCCUGUAUGCCA. Pri-mRNA coordinates for MIR160b (converted to TAIR10 based on PMID19304749): Chr4: 9888799-9889176 (forward), length: 378 bp; exon coordinates: exon 1: 9888799-9889176; mature miRNA and miRNA* are located on exon 1.The miR160b pri-mRNA also encodes a regulatory peptide miPEP160b (AT4G17787) that regulates accumulation of its own miRNA	microRNA ath-MIR160b precursor;(source:Araport11)
AT4G15733.1	protein_coding	SCR-like 11	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 11;(source:Araport11)
AT4G03505.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G09153.1	protein_coding	low-molecular-weight cysteine-rich 36	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 36;(source:Araport11)
AT4G14819.1	protein_coding	Protein of unknown function (DUF1677)		hypothetical protein (DUF1677);(source:Araport11)
AT4G33465.1	protein_coding	SCR-like 22	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 22;(source:Araport11)
AT4G08867.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G25631.1	small_nucleolar_rna	U60.2F; snoRNA	Encodes a novel C/D box snoRNA (U60.2f) encoded within the 5th intron of FIB2. Gb: AF228365	U60.2F,snoRNA;(source:Araport11)
AT4G30067.1	protein_coding	low-molecular-weight cysteine-rich 63	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 63;(source:Araport11)
AT4G09984.1	protein_coding	low-molecular-weight cysteine-rich 34	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 34;(source:Araport11)
AT4G18205.1	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT4G30064.1	protein_coding	low-molecular-weight cysteine-rich 61	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 61;(source:Araport11)
AT4G25845.1	protein_coding			oxysterol-binding 4B-like protein;(source:Araport11)
AT4G17713.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT4G13095.1	protein_coding	low-molecular-weight cysteine-rich 37	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 37;(source:Araport11)
AT4G09795.1	protein_coding	low-molecular-weight cysteine-rich 13	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 13;(source:Araport11)
AT4G01883.1	protein_coding	Polyketide cyclase / dehydrase and lipid transport protein		Polyketide cyclase / dehydrase and lipid transport protein;(source:Araport11)
AT4G06735.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT4G19038.1	protein_coding	low-molecular-weight cysteine-rich 15	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 15;(source:Araport11)
AT4G18501.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G02733.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G18195.1	protein_coding	purine permease 8	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 8;(source:Araport11)
AT4G22666.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G30074.1	protein_coding	low-molecular-weight cysteine-rich 19	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 19;(source:Araport11)
AT4G06637.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1);(source:TAIR10)
AT4G00885.1	miRNA_primary_transcript	MIR165/MIR165B; miRNA	Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUCCCC	microRNA ath-MIR165b precursor;(source:Araport11)
AT4G14315.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G14272.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT4G00026.1	protein_coding		Encodes SD3 (Segregation Distortion 3), a protein with high similarity to yeast translocase on the inner mitochondrial membrane 21 (TIM21). sd3 mutants show seedling-lethal phenotype in light-grown seedlings and shorter hypocotyls in dark-grown seedlings. SD3 overexpression plants show increase in cell number and cell size, as well as elevated ATP level.	import inner membrane translocase subunit;(source:Araport11)
AT4G15258.1	small_nucleolar_rna	SNOR37-2; snoRNA	Encodes a C/D box snoRNA (snoR37-2). Gb: AJ505638	SNOR37-2,snoRNA;(source:Araport11)
AT4G14305.1	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT4G29283.1	protein_coding	low-molecular-weight cysteine-rich 21	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 21;(source:Araport11)
AT4G29658.1	protein_coding	prenylated RAB acceptor 1.C		prenylated RAB acceptor 1.C;(source:Araport11)
AT4G19905.1	protein_coding	low-molecular-weight cysteine-rich 38	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 38;(source:Araport11)
AT4G22115.1	protein_coding	SCR-like 14	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 14;(source:Araport11)
AT4G10655.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of low-molecular-weight cysteine-rich 64;(source:Araport11)
AT4G05048.1	small_nucleolar_rna	U49.1; snoRNA	Encodes a C/D box snoRNA (U49.1). Gb: AJ300655	U49.1,snoRNA;(source:Araport11)
AT4G13955.1	protein_coding		Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT4G22105.1	protein_coding	SCR-like 26	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 26;(source:Araport11)
AT5G35170.2	protein_coding	adenylate kinase family protein		adenylate kinase family protein;(source:Araport11)
AT5G60410.3	protein_coding	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain	Encodes  a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis.  Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation.  signaling	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein;(source:Araport11)
AT5G60410.4	protein_coding	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain	Encodes  a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis.  Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation.  signaling	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein;(source:Araport11)
AT5G60430.2	protein_coding	drug transmembrane transporters;antiporters		antiporter/ drug transporter;(source:Araport11)
AT5G60390.2	protein_coding	GTP binding Elongation factor Tu family protein		GTP binding Elongation factor Tu family protein;(source:Araport11)
AT5G39580.2	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT5G10650.2	protein_coding	RING/U-box superfamily protein	JUL1 encode a RING-type E3 ubiquitin ligase that is involved in JA responses. It ubiquitinates the JAV1 jasmonic acid response repressor which is then degraded by the proteosome.	RING/U-box superfamily protein;(source:Araport11)
AT5G60580.4	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G35360.2	protein_coding	acetyl Co-enzyme a carboxylase biotin carboxylase subunit	Encodes biotin carboxylase subunit (CAC2).	acetyl Co-enzyme a carboxylase biotin carboxylase subunit;(source:Araport11)
AT5G60880.2	protein_coding	breaking of asymmetry in the stomatal lineage	Encodes BASL (BREAKING OF ASYMMETRY IN THE STOMATAL LINEAGE), a regulator of asymmetric divisions. In asymmetrically dividing stomatal-lineage cells, BASL accumulates in a polarized crescent at the cell periphery before division, and then localizes differentially to the nucleus and a peripheral crescent in self-renewing cells and their sisters after division. Its transcript levels change after inducing MUTE expression in a mute background.	breaking of asymmetry in the stomatal lineage;(source:Araport11)
AT5G55410.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G05410.2	protein_coding	DRE-binding protein 2A	Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress).  Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B.  The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress-inducible genes. The mRNA is cell-to-cell mobile.	DRE-binding protein 2A;(source:Araport11)
AT5G55520.2	protein_coding			kinesin-like protein;(source:Araport11)
AT5G61010.2	protein_coding	exocyst subunit exo70 family protein E2	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	exocyst subunit exo70 family protein E2;(source:Araport11)
AT5G60360.2	protein_coding	aleurain-like protease	Encodes a senescence-associated thiol protease. The mRNA is cell-to-cell mobile.	aleurain-like protease;(source:Araport11)
AT5G17230.2	protein_coding	PHYTOENE SYNTHASE	Encodes phytoene synthase that is the rate-limiting enzyme in the carotenoid biosynthetic pathway and that interacts with the ORANGE (OR) protein.  PSY's expression is posttransciptionally regulated by OR.	PHYTOENE SYNTHASE;(source:Araport11)
AT5G23450.3	protein_coding	long-chain base (LCB) kinase 1	Encodes a sphingosine kinase that specifically phosphorylates D-erythro-dihydrosphingosine (DHS), but not N-acetyl-DHS or D-threo-DHS. It also also phosphorylates D-erythro-sphingosine, trans-4, trans-8-sphingadienine and phytosphingosine.	long-chain base (LCB) kinase 1;(source:Araport11)
AT5G66420.2	protein_coding			TIM-barrel signal transduction protein;(source:Araport11)
AT5G44290.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G44290.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G43930.3	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G43930.2	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G23080.2	protein_coding	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein	Interacts with TATA-box binding protein 2. Contains domains with strong similarity to G-patch and  SWAP domains, characteristic of RNA binding and processing proteins. Colocalizes with the splicing regulator SRp34 to subnuclear particles. It is an important component of miRNA and siRNA biogenesis. Mutants display developmental defects, including reduced plant height, polycotyly, and reduced vascularization. Strong genetic interaction between TGH and AMP1.	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G23090.4	protein_coding	nuclear factor Y, subunit B13		nuclear factor Y, subunit B13;(source:Araport11)
AT5G44110.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a member of the NAP subfamily of ABC transporters whose expression pattern is regulated by light and sucrose.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G66400.2	protein_coding	Dehydrin family protein	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein.  The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway.  RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.	Dehydrin family protein;(source:Araport11)
AT5G39160.2	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G44500.2	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT5G18540.2	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT5G45410.2	protein_coding		Plastid localized protein of unknown function. Mutants are more susceptible to P. syringae and produce less callose upon infection.	zinc finger B-box protein;(source:Araport11)
AT5G45300.2	protein_coding	beta-amylase 2	Encodes a beta-amylase-like protein present in the nucleus rather than targeted to the chloroplast. Contains BRASSINAZOLE RESISTANT1 (BZR1)-type DNA binding domains.  Activates gene expression in protoplast transactivation assays.	beta-amylase 2;(source:Araport11)
AT5G18500.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G40260.2	protein_coding	Nodulin MtN3 family protein	Encodes RPG1 (RUPTURED POLLEN GRAIN1), a member of the MtN3/saliva gene family. Crucial for exine pattern formation and cell integrity of microspores.	Nodulin MtN3 family protein;(source:Araport11)
AT5G67390.2	protein_coding			glycosyltransferase-like protein;(source:Araport11)
AT5G45030.2	protein_coding	Trypsin family protein		Trypsin family protein;(source:Araport11)
AT5G67380.2	protein_coding	casein kinase alpha 1	Casein kinase II (CK2) catalytic subunit (alpha 1). One known substrate of CK2 is Phytochrome Interacting Factor 1 (PIF1). CK2-mediated phosphorylation enhances the light-induced degradation of PIF1 to promote photomorphogenesis.	casein kinase alpha 1;(source:Araport11)
AT5G67610.2	protein_coding	Uncharacterized conserved protein (DUF2215)	Encodes an orthlog of the Xenopus inner nuclear membrane (INM) protein Nemp1/TMEM194A.	transmembrane protein (DUF2215);(source:Araport11)
AT5G61580.2	protein_coding	phosphofructokinase 4		phosphofructokinase 4;(source:Araport11)
AT5G61540.3	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein		N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT5G35630.2	protein_coding	glutamine synthetase 2	chloroplastic glutamine synthetase The mRNA is cell-to-cell mobile.	glutamine synthetase 2;(source:Araport11)
AT5G05980.2	protein_coding	DHFS-FPGS homolog B	Encodes one of the three folylpolyglutamate synthetase isoforms (FPGSs): FPGS1 (At5g05980, plastidic), FPGS2 (At3g10160, mitochondrial) and FPGS3 (At3g55630, cytosolic).	DHFS-FPGS homolog B;(source:Araport11)
AT5G61310.3	protein_coding	Cytochrome c oxidase subunit Vc family protein		Cytochrome c oxidase subunit Vc family protein;(source:Araport11)
AT5G11510.2	protein_coding	myb domain protein 3r-4	Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4.  Functions in powdery mildew induced host endoreduplication at the site of infection.	myb domain protein 3r-4;(source:Araport11)
AT5G61270.2	protein_coding	phytochrome-interacting factor7	Basic helix-loop-helix (bHLH) phytochrome interacting  factor. Interacts specifically with the far-red light–absorbing Pfr form of phyB through a conserved  domain called the active phyB binding motif. Upon light exposure, PIF7 rapidly migrates to intranuclear  speckles, where it colocalizes with phyB. Role as negative regulator of phyB-mediated seedling deetiolation.	phytochrome-interacting factor7;(source:Araport11)
AT5G56040.2	protein_coding	Leucine-rich receptor-like protein kinase family protein		Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT5G50680.2	protein_coding	SUMO activating enzyme 1B	Encodes a protein that is part of a heterodimeric SUMO E1 activating enzyme.	SUMO activating enzyme 1B;(source:Araport11)
AT5G23670.2	protein_coding	long chain base2	Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis.  The protein is localized to the endoplasmic reticulum.	long chain base2;(source:Araport11)
AT5G23720.3	protein_coding	dual specificity protein phosphatase family protein	Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1).  One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells.  A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling.	dual specificity protein phosphatase family protein;(source:Araport11)
AT5G23610.2	protein_coding			DYAD protein;(source:Araport11)
AT5G23590.2	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G50830.2	protein_coding			nuclear polyadenylated RNA-binding protein;(source:Araport11)
AT5G05690.2	protein_coding	Cytochrome P450 superfamily protein	Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis.  Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in <i>bri1</i> mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.	Cytochrome P450 superfamily protein;(source:Araport11)
AT5G50430.3	protein_coding	ubiquitin-conjugating enzyme 33		ubiquitin-conjugating enzyme 33;(source:Araport11)
AT5G50430.2	protein_coding	ubiquitin-conjugating enzyme 33		ubiquitin-conjugating enzyme 33;(source:Araport11)
AT5G05920.2	protein_coding	deoxyhypusine synthase	Encodes a deoxyhypusine synthase.	deoxyhypusine synthase;(source:Araport11)
AT5G24150.2	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein	squalene monooxygenase gene homolog	FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT5G51040.2	protein_coding		Encodes succinate dehydrogenase assembly factor 2 (SDHAF2), a low abundance mitochondrial protein needed for assembly and activity of mitochondrial complex II and for normal root elongation.Sdhaf2 knockdown line showed lowered SDH1 protein abundance, lowered maximal SDH activity and less protein-bound FAD at the molecular mass of SDH1.	succinate dehydrogenase assembly factor;(source:Araport11)
AT5G23810.2	protein_coding	amino acid permease 7	Encodes nonfunctional amino acid transporter.  AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.	amino acid permease 7;(source:Araport11)
AT5G51080.3	protein_coding	RNase H family protein		RNase H family protein;(source:Araport11)
AT5G51080.2	protein_coding	RNase H family protein		RNase H family protein;(source:Araport11)
AT5G03970.2	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G54190.2	protein_coding	protochlorophyllide oxidoreductase A	light-dependent NADPH:protochlorophyllide oxidoreductase A	protochlorophyllide oxidoreductase A;(source:Araport11)
AT5G53760.2	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO11 belongs to the clade I, with AtMLO4 and AtMLO14. The gene is expressed during early seedling growth (in primary root), in root tips and lateral root primordia, and in very young leaves, and in flowers and fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT5G53860.3	protein_coding	embryo defective 2737	Encodes a plant-specific protein with a domain similar to the central cysteine-rich domain of DnaJ proteins. It is involved in chloroplast and leaf development.	embryo defective 2737;(source:Araport11)
AT5G22220.3	protein_coding	E2F transcription factor 1	Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. Binds DPA and RBR1 proteins. Expressed throughout the cell cycle. Abundance increased by auxin through stabilization of the protein. Elevates CDK levels and activity, even under hormone-free conditions. Promotes cell division and shortens cell doubling time, inhibits cell growth. Transgenic plants overexpressing AtE2Fa contained an increased level of AtE2Fb transcripts that is paralleled by an increase in the amount of the AtE2Fb protein, suggesting that AtE2Fb expression might actually be up-regulated by the AtE2Fa transcription factor.	E2F transcription factor 1;(source:Araport11)
AT5G49510.2	protein_coding	prefoldin 3		prefoldin 3;(source:Araport11)
AT5G49410.2	protein_coding			thiamine-phosphate synthase;(source:Araport11)
AT5G16030.2	protein_coding			mental retardation GTPase activating protein;(source:Araport11)
AT5G22340.2	protein_coding			NF-kappa-B inhibitor-like protein;(source:Araport11)
AT5G49030.2	protein_coding	tRNA synthetase class I (I, L, M and V) family protein		tRNA synthetase class I (I, L, M and V) family protein;(source:Araport11)
AT5G49015.2	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT5G48880.3	protein_coding	peroxisomal 3-keto-acyl-CoA thiolase 2	Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.	peroxisomal 3-keto-acyl-CoA thiolase 2;(source:Araport11)
AT5G04370.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	A member of the Arabidopsis SABATH methyltransferase gene family.  Encodes NAMT1, a methyltransferase that methylates nicotinic acid to yield methyl nicotinate.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G49215.2	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT5G21930.2	protein_coding	P-type ATPase of Arabidopsis 2	P-Type ATPase, mediates copper transport to chloroplast thylakoid lumen. Required for accumulation of copper-containing plastocyanin in the thylakoid lumen and for effective photosynthetic electron transport	P-type ATPase of Arabidopsis 2;(source:Araport11)
AT5G65060.2	protein_coding	K-box region and MADS-box transcription factor family protein 	MADS domain protein - flowering regulator that is closely related to FLC	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G65110.2	protein_coding	acyl-CoA oxidase 2	Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis.	acyl-CoA oxidase 2;(source:Araport11)
AT5G59540.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G65290.2	protein_coding	LMBR1-like membrane protein		LMBR1-like membrane protein;(source:Araport11)
AT5G65210.4	protein_coding	bZIP transcription factor family protein	Encodes TGA1, a redox-controlled regulator of systemic acquired resistance.  TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.	bZIP transcription factor family protein;(source:Araport11)
AT5G65210.5	protein_coding	bZIP transcription factor family protein	Encodes TGA1, a redox-controlled regulator of systemic acquired resistance.  TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.	bZIP transcription factor family protein;(source:Araport11)
AT5G65210.3	protein_coding	bZIP transcription factor family protein	Encodes TGA1, a redox-controlled regulator of systemic acquired resistance.  TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.	bZIP transcription factor family protein;(source:Araport11)
AT5G15840.2	protein_coding	B-box type zinc finger protein with CCT domain	Encodes a protein showing similarities to zinc finger transcription factors, involved in regulation of flowering under long days. Acts upstream of FT and SOC1.	B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT5G64830.2	protein_coding	programmed cell death 2 C-terminal domain-containing protein		programmed cell death 2 C-terminal domain-containing protein;(source:Araport11)
AT5G15240.2	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT5G21170.2	protein_coding	5'-AMP-activated protein kinase beta-2 subunit protein	Encodes AKINbeta1, a subunit of the SnRK1 kinase (Sucrose non-fermenting-1-related protein kinase).  Involved in regulation of nitrogen and sugar metabolism. As part of the regulatory subunit, it binds maltose which promotes kinase activity.	5-AMP-activated protein kinase beta-2 subunit protein;(source:Araport11)
AT5G21430.2	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G38220.3	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G15950.2	protein_coding	Adenosylmethionine decarboxylase family protein		Adenosylmethionine decarboxylase family protein;(source:Araport11)
AT5G65310.2	protein_coding	homeobox protein 5	Encodes a class I HDZip (homeodomain-leucine zipper) protein that is a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment.	homeobox protein 5;(source:Araport11)
AT5G59730.2	protein_coding	exocyst subunit exo70 family protein H7	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. The mRNA is cell-to-cell mobile.	exocyst subunit exo70 family protein H7;(source:Araport11)
AT5G54930.2	protein_coding	AT hook motif-containing protein		AT hook motif-containing protein;(source:Araport11)
AT5G27640.2	protein_coding	translation initiation factor 3B1	encodes a member of eukaryotic translation initiation factor 3B family.	translation initiation factor 3B1;(source:Araport11)
AT5G04800.4	protein_coding	Ribosomal S17 family protein		Ribosomal S17 family protein;(source:Araport11)
AT5G04800.3	protein_coding	Ribosomal S17 family protein		Ribosomal S17 family protein;(source:Araport11)
AT5G10330.2	protein_coding	histidinol phosphate aminotransferase 1	Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.	histidinol phosphate aminotransferase 1;(source:Araport11)
AT5G10320.2	protein_coding			ATP synthase subunit B;(source:Araport11)
AT5G10320.3	protein_coding			ATP synthase subunit B;(source:Araport11)
AT5G10450.2	protein_coding	G-box regulating factor 6	Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3&#955;). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1. Interacts with JAZ10.4 which lacks the Jas motif.  It is also phosphorylated by CRPK1 as part of the response to cold and translocates to the nucleus after phosphorylation.	G-box regulating factor 6;(source:Araport11)
AT5G22875.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G28050.2	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT5G28020.3	protein_coding	cysteine synthase D2	Encodes cysteine synthase CysD2.	cysteine synthase D2;(source:Araport11)
AT5G28020.5	protein_coding	cysteine synthase D2	Encodes cysteine synthase CysD2.	cysteine synthase D2;(source:Araport11)
AT5G28020.4	protein_coding	cysteine synthase D2	Encodes cysteine synthase CysD2.	cysteine synthase D2;(source:Araport11)
AT5G28080.2	protein_coding	Protein kinase superfamily protein	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.	Protein kinase superfamily protein;(source:Araport11)
AT5G55130.2	protein_coding	co-factor for nitrate, reductase and xanthine dehydrogenase 5	putative molybdopterin synthase sulphurylase (cnx5)	co-factor for nitrate, reductase and xanthine dehydrogenase 5;(source:Araport11)
AT5G27830.2	protein_coding			folate receptor family protein;(source:Araport11)
AT5G05010.2	protein_coding	clathrin adaptor complexes medium subunit family protein		clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT5G66005.3	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT5G38480.2	protein_coding	general regulatory factor 3	general regulatory factor, a 14-3-3 gene	general regulatory factor 3;(source:Araport11)
AT5G65940.2	protein_coding	beta-hydroxyisobutyryl-CoA hydrolase 1	hydrolyzes beta-hydroxyisobutyryl-CoA	beta-hydroxyisobutyryl-CoA hydrolase 1;(source:Araport11)
AT5G16630.2	protein_coding	DNA repair protein Rad4 family		DNA repair protein Rad4 family;(source:Araport11)
AT5G38410.2	protein_coding	Ribulose bisphosphate carboxylase (small chain) family protein	Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410). Functions to yield sufficient Rubisco content for leaf photosynthetic capacity.	Ribulose bisphosphate carboxylase (small chain) family protein;(source:Araport11)
AT5G66170.2	protein_coding	sulfurtransferase 18	Encodes a thiosulfate sulfurtransferase/rhodanese.	sulfurtransferase 18;(source:Araport11)
AT5G66180.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G66180.3	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G66070.2	protein_coding	RING/U-box superfamily protein	E3 ubiquitin ligase that functions in negative regulation of ABA signaling.	RING/U-box superfamily protein;(source:Araport11)
AT5G16300.3	protein_coding	Vps51/Vps67 family (components of vesicular transport) protein		Vps51/Vps67 family (components of vesicular transport) protein;(source:Araport11)
AT5G65860.2	protein_coding	ankyrin repeat family protein		ankyrin repeat family protein;(source:Araport11)
AT5G16505.2	transposable_element_gene		Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1), AT2G30640 (MUG2), AT1G06740 (MUG3), AT5G16505 (MUG4), AT3G06940 (MUG5), AT5G48965 (MUG6), AT3G05850 (MUG7) and AT5G34853 (MUG8).	transposable_element_gene;(source:Araport11);Mutator-like transposase family, has a 1.4e-59 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays);(source:TAIR10)
AT5G65740.2	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT5G65740.3	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT5G10240.2	protein_coding	asparagine synthetase 3	Encodes asparagine synthetase (ASN3).	asparagine synthetase 3;(source:Araport11)
AT5G04420.3	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G04420.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G09660.2	protein_coding	peroxisomal NAD-malate dehydrogenase 2	encodes a microbody NAD-dependent malate dehydrogenase  encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.	peroxisomal NAD-malate dehydrogenase 2;(source:Araport11)
AT5G09680.2	protein_coding	reduced lateral root formation	Encodes RLF (Reduced Lateral root Formation).  Involved in lateral root formation.  Contains a cytochrome b5-like heme/steroid binding domain.  Localized in the cytosol.	reduced lateral root formation;(source:Araport11)
AT5G09890.2	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT5G09820.2	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein	Encodes fibrillin 5 (FBN5). Located in chloroplast stroma. Essential for plastoquinone-9 biosynthesis. Stimulates enzymatic activity of solanesyl diphosphate synthases (SPS) 1 and 2 through binding to solanesyl moiety. Two splicing variants, named FBN5-A shorter one and FBN5-B longer one. FBN5-B is the protein detected in chloroplast stroma.	Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT5G52330.2	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT5G25980.3	protein_coding	glucoside glucohydrolase 2	Myrosinase (thioglucoside glucohydrolase) gene involved in glucosinoloate metabolism. The mRNA is cell-to-cell mobile.	glucoside glucohydrolase 2;(source:Araport11)
AT5G02150.2	protein_coding	Fes1C	Encodes one of the Arabidopsis orthologs of the human Hsp70-binding protein 1 (HspBP-1) and yeast Fes1p: Fes1A (AT3G09350), Fes1B (AT3G53800), Fes1C (AT5G02150).	Fes1C;(source:Araport11)
AT5G52110.2	protein_coding	Protein of unknown function (DUF2930)		chaperone (DUF2930);(source:Araport11)
AT5G52300.2	protein_coding	CAP160 protein	Encodes a protein that is induced in expression in response to water deprivation such as cold, high-salt, and desiccation. The response appears to be via abscisic acid. The promoter region contains two ABA-responsive elements (ABREs) that are required for the dehydration-responsive expression of rd29B as cis-acting elements. Protein is a member of a gene family with other members found plants, animals and fungi.	CAP160 protein;(source:Araport11)
AT5G26030.2	protein_coding	ferrochelatase 1	encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins The mRNA is cell-to-cell mobile.	ferrochelatase 1;(source:Araport11)
AT5G26770.3	protein_coding		NEAP2 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.	myosin heavy chain, cardiac protein;(source:Araport11)
AT5G52800.2	protein_coding	DNA primases	primase/polymerase protein	DNA primase;(source:Araport11)
AT5G26742.2	protein_coding	DEAD box RNA helicase (RH3)		DEAD box RNA helicase (RH3);(source:Araport11)
AT5G26667.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	encodes a uridine 5'-monophosphate (UMP)/cytidine 5'-monophosphate (CMP) kinase. The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G63600.2	protein_coding	flavonol synthase 5	encodes a protein whose sequence is similar to flavonol synthase	flavonol synthase 5;(source:Araport11)
AT5G13980.3	protein_coding	Glycosyl hydrolase family 38 protein		Glycosyl hydrolase family 38 protein;(source:Araport11)
AT5G57970.2	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT5G58005.2	protein_coding	Cytochrome c oxidase, subunit Vib family protein		Cytochrome c oxidase, subunit Vib family protein;(source:Araport11)
AT5G07890.3	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT5G07890.2	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT5G63400.2	protein_coding	adenylate kinase 1	encodes a protein similar to adenylate kinase.	adenylate kinase 1;(source:Araport11)
AT5G13750.3	protein_coding	zinc induced facilitator-like 1		zinc induced facilitator-like 1;(source:Araport11)
AT5G57790.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G63470.2	protein_coding	nuclear factor Y, subunit C4	Encodes a member of class of transcription regulators that his highly conserved across many plant species.In Arabidopsis and rice, NF-YC4 interacts with other members of this class and CO to regulate flowering. In Arabidopsis, it interacts with QQS to regulate C/N partitioning.	nuclear factor Y, subunit C4;(source:Araport11)
AT5G35980.2	protein_coding	yeast YAK1-related gene 1	Encodes a dual specificity protein kinase which phosphorylates substract proteins on Ser/Thr and Tyr residues. Some substrates include annexin family proteins. YAK1 mutations suppress TOR deficiency in Arabidopsis and consequences of lst8 mutations. The YAK1 protein is phosphorylated by the TOR kinase.	YAK1-like protein 1;(source:Araport11)
AT5G35995.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G58320.3	protein_coding	Kinase interacting (KIP1-like) family protein	Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the tonoplast membrane. It is expressed in the epidermis of the root meristem and the early expansion zone.	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT5G36890.2	protein_coding	beta glucosidase 42		beta glucosidase 42;(source:Araport11)
AT5G36880.2	protein_coding	acetyl-CoA synthetase	Encodes a plastidic acetyl-coA synthetase. This enzyme plays a role in converting acetate to acetyl-coA in the plastids. It does not appear to be a major contributor to  fatty acid biosynthesis based on mutant phenotypes. The enzyme seems to act as a monomer and may play an important role  in preventing the toxic accumulation of fermentation products including acetaldehyde, acetate, and ethanol. It participates in  the pyruvate dehydrogenase bypass pathway	acetyl-CoA synthetase;(source:Araport11)
AT5G58220.2	protein_coding	transthyretin-like protein	Encodes a transthyretin-like S-allantoin synthase protein that catalyzes two steps in the allantoin biosynthesis pathway by acting as a hydroxyisourate hydrolase and a 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) decarboxylase. Two alternatively spliced versions of the transcript give rise to a longer peroxisomally-targeted protein (AT5G58220.1  (called TTL1-)) and a slightly shorter cytoplasmic protein (AT5G58220.3 (called TTL2-)). Both have roughly equivalent enzymatic activity in vitro, but, allantoin biosynthesis is believed to occur in the peroxisome suggesting that the cytosolic form may participate in a different process.	transthyretin-like protein;(source:Araport11)
AT5G58220.3	protein_coding	transthyretin-like protein	Encodes a transthyretin-like S-allantoin synthase protein that catalyzes two steps in the allantoin biosynthesis pathway by acting as a hydroxyisourate hydrolase and a 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) decarboxylase. Two alternatively spliced versions of the transcript give rise to a longer peroxisomally-targeted protein (AT5G58220.1  (called TTL1-)) and a slightly shorter cytoplasmic protein (AT5G58220.3 (called TTL2-)). Both have roughly equivalent enzymatic activity in vitro, but, allantoin biosynthesis is believed to occur in the peroxisome suggesting that the cytosolic form may participate in a different process.	transthyretin-like protein;(source:Araport11)
AT5G08080.2	protein_coding	syntaxin of plants 132	member of SYP13 Gene Family	syntaxin of plants 132;(source:Araport11)
AT5G59160.3	protein_coding	type one serine/threonine protein phosphatase 2	Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.	type one serine/threonine protein phosphatase 2;(source:Araport11)
AT5G59090.2	protein_coding	subtilase 4.12		subtilase 4.12;(source:Araport11)
AT5G59090.3	protein_coding	subtilase 4.12		subtilase 4.12;(source:Araport11)
AT5G09390.2	protein_coding	CD2-binding protein-related		CD2-binding protein-like protein;(source:Araport11)
AT5G58800.2	protein_coding	Quinone reductase family protein		Quinone reductase family protein;(source:Araport11)
AT5G58787.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G58960.3	protein_coding	Plant protein of unknown function (DUF641)	Mutant plants display impaired light-regulation of the hypocotyl randomization response.	glucose-6-phosphate isomerase, putative (DUF641);(source:Araport11)
AT5G02840.3	protein_coding	LHY/CCA1-like 1	Encodes RVE4, a homolog of the circadian rhythm regulator RVE8. rve4 rve6 rve8 triple mutants display an extremely long circadian period, with delayed and reduced expression of evening-phased clock genes. Involved in heat shock response.	LHY/CCA1-like 1;(source:Araport11)
AT5G14250.2	protein_coding	Proteasome component (PCI) domain protein	Encodes subunit 3 of the COP9 signalosome.	Proteasome component (PCI) domain protein;(source:Araport11)
AT5G20250.3	protein_coding	Raffinose synthase family protein	encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. The mRNA is cell-to-cell mobile.	Raffinose synthase family protein;(source:Araport11)
AT5G14440.2	protein_coding	Surfeit locus protein 2 (SURF2)		Surfeit locus protein 2 (SURF2);(source:Araport11)
AT5G20300.3	protein_coding	Avirulence induced gene (AIG1) family protein	Encodes Toc90, part of the TOC (translocon at the outer chloroplast membrane) machinery involved in the import of nucleus-encoded proteins into the chloroplast.	Avirulence induced gene (AIG1) family protein;(source:Araport11)
AT5G20300.2	protein_coding	Avirulence induced gene (AIG1) family protein	Encodes Toc90, part of the TOC (translocon at the outer chloroplast membrane) machinery involved in the import of nucleus-encoded proteins into the chloroplast.	Avirulence induced gene (AIG1) family protein;(source:Araport11)
AT5G14200.3	protein_coding	isopropylmalate dehydrogenase 1	The AtIMD1 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids. Encodes methylthioalkylmalate dehydrogenase. Involved in glucosinolate biosynthesis, in methionine chain elongation. The mRNA is cell-to-cell mobile.	isopropylmalate dehydrogenase 1;(source:Araport11)
AT5G14200.2	protein_coding	isopropylmalate dehydrogenase 1	The AtIMD1 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids. Encodes methylthioalkylmalate dehydrogenase. Involved in glucosinolate biosynthesis, in methionine chain elongation. The mRNA is cell-to-cell mobile.	isopropylmalate dehydrogenase 1;(source:Araport11)
AT5G64040.2	protein_coding	photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)	Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex. Phosphorylation of this protein is dependent on calcium.	photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN);(source:Araport11)
AT5G42900.3	protein_coding	cold regulated gene 27		cold regulated protein 27;(source:Araport11)
AT5G63970.2	protein_coding	Copine (Calcium-dependent phospholipid-binding protein) family	Encodes a ubiquitin ligase that is an essential upstream modulator of JA signaling in response to various stimuli.	Copine (Calcium-dependent phospholipid-binding protein) family;(source:Araport11)
AT5G47720.5	protein_coding	Thiolase family protein	Encodes a functional acetoacetyl-CoA thiolase that is functionally redundant with AACT2.  Loss-of-function mutants show no apparent growth phenotypes.	Thiolase family protein;(source:Araport11)
AT5G20060.3	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G47880.2	protein_coding	eukaryotic release factor 1-1	Encodes a eukaryotic release factor 1 homolog.  Cosuppression of the gene's expression results affects cell elongation of the inflorescence stem, specifically the internodes, and radial cell division.  Expression of the protein is primarily observed in the vascular system and in actively growing and elongating zones.	eukaryotic release factor 1-1;(source:Araport11)
AT5G64460.4	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT5G64460.5	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT5G64460.3	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT5G64400.2	protein_coding			CHCH domain protein;(source:Araport11)
AT5G14740.4	protein_coding	carbonic anhydrase 2	Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm.  Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.	carbonic anhydrase 2;(source:Araport11)
AT5G14740.3	protein_coding	carbonic anhydrase 2	Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm.  Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.	carbonic anhydrase 2;(source:Araport11)
AT5G08450.3	protein_coding		Component of histone-deacetylase complexes. Interacts with HDA6 and HDA19 and facilitates histone deacetylation. Several salt-inducible genes are de-repressed in hdc1 mutants. Mutants are hypersensitive to ABA during germination, grow less and flower later than wildtype. HDC1-overexpressing plants display opposite phenotypes.	zinc finger CCCH domain protein;(source:Araport11)
AT5G58640.2	protein_coding	Selenoprotein, Rdx type		Selenoprotein, Rdx type;(source:Araport11)
AT5G14920.2	protein_coding	Gibberellin-regulated family protein	Encodes a GASA domain containing protein that  regulates increases in plant growth through GA-induced and DELLA-dependent signal transduction and that can increase abiotic stress resistance by reducing ROS accumulation.	Gibberellin-regulated family protein;(source:Araport11)
AT5G58700.2	protein_coding	phosphatidylinositol-speciwc phospholipase C4		phosphatidylinositol-speciwc phospholipase C4;(source:Araport11)
AT5G64520.3	protein_coding	homolog of X-ray repair cross complementing 2 (XRCC2)	Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.	homolog of X-ray repair cross complementing 2 (XRCC2);(source:Araport11)
AT5G64130.2	protein_coding	cAMP-regulated phosphoprotein 19-related protein		cAMP-regulated phosphoprotein 19-related protein;(source:Araport11)
AT5G64360.4	protein_coding	Chaperone DnaJ-domain superfamily protein	EIP9 interacts with EMF1 to regulate flowering. It functions partially redundantly with SDJ2 and SDJ3 and interacts with SUVH1 and SUVH3 to form a SUVH-SDJ complex. The complex binds promoters with DNA methylation and mediates transcriptional activation of promoter methylated genes.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G08400.2	protein_coding	Protein of unknown function (DUF3531)		structural maintenance of chromosomes-like protein, putative (DUF3531);(source:Araport11)
AT5G64220.2	protein_coding	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains	CAMTA2 proteins bind to the AtALMT1 promoter at in vitro. The gene itself is Al inducible, and AtALMT1 expression is partially repressed in camta2 mutant. The mRNA is cell-to-cell mobile.	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain;(source:Araport11)
AT5G08370.2	protein_coding	alpha-galactosidase 2	Member of Glycoside Hydrolase Family 27 (GH27)that functions as an &#945;-galactosidase.	alpha-galactosidase 2;(source:Araport11)
AT5G40830.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G46110.3	protein_coding	Glucose-6-phosphate/phosphate translocator-related	Encodes a chloroplast triose phosphate / 3-phosphoglycerate translocator that transports triose phosphates derived from the Calvin cycle in the stroma to the cytosol for use in sucrose synthesis and other biosynthetic processes. A tpt mutant has altered acclimation responses. The mRNA is cell-to-cell mobile.	Glucose-6-phosphate/phosphate translocator-like protein;(source:Araport11)
AT5G40700.2	protein_coding			transcriptional regulator ATRX-like protein;(source:Araport11)
AT5G51980.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G24770.2	protein_coding	vegetative storage protein 2	Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.	vegetative storage protein 2;(source:Araport11)
AT5G13050.2	protein_coding	5-formyltetrahydrofolate cycloligase	5-Formyltetrahydrofolate cycloligase (5-CHO-THF cycloligase - AT5G13050.1) regulates/influences under photorespiratory conditions the activity of another gene product, i.e. serine hydroxymethyltransferase (SHMT) due to accumulating amounts of 5-Formyltetrahydrofolate	5-formyltetrahydrofolate cycloligase;(source:Araport11)
AT5G40890.2	protein_coding	chloride channel A	Encodes a member of the voltage-dependent chloride channel. Also functions as a NO3-/H+ exchanger that serves to accumulate nitrate nutrient in vacuoles.  Mutants homozygous for the T-DNA insertion mutation have reduced nitrate uptake capacity in high nitrate environment and exhibit hypersensitivity to chlorate.	chloride channel A;(source:Araport11)
AT5G12370.3	protein_coding	exocyst complex component sec10		exocyst complex component sec10;(source:Araport11)
AT5G12370.2	protein_coding	exocyst complex component sec10		exocyst complex component sec10;(source:Araport11)
AT5G41150.2	protein_coding	Restriction endonuclease, type II-like superfamily protein	Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair  and yeast Rad1 proteins	Restriction endonuclease, type II-like superfamily protein;(source:Araport11)
AT5G62165.3	protein_coding	AGAMOUS-like 42	Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT5G06440.3	protein_coding			polyketide cyclase/dehydrase/lipid transport superfamily protein;(source:Araport11)
AT5G56500.2	protein_coding	TCP-1/cpn60 chaperonin family protein	Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins.  Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).	TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT5G61960.2	protein_coding	MEI2-like protein 1	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.	MEI2-like protein 1;(source:Araport11)
AT5G61810.2	protein_coding	Mitochondrial substrate carrier family protein	Encodes the predominant of three APC isoforms in Arabidopsis, a calcium-dependent mitochondrial ATP-Mg/Pi transporter.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G28910.2	protein_coding			alpha-(1,6)-fucosyltransferase;(source:Araport11)
AT5G51300.3	protein_coding	splicing factor-related	Encodes a nuclear localized splicing factor homolog that is involved in alternative splicing of some mRNAs.	splicing factor-like protein;(source:Araport11)
AT5G28770.3	protein_coding	bZIP transcription factor family protein	BASIC LEUCINE ZIPPER protein which regulates the circadian oscillator gene PSEUDO RESPONSE REGULATOR7 (PRR7) to change the circadian phase in response to sugars. It upregulates PRR7 in response to low energy. bZIP63 and PRR7 are required for correct oscillator phase under light/dark cycles. bZIP protein BZO2H3 mRNA, partial cds	bZIP transcription factor family protein;(source:Araport11)
AT5G06530.3	protein_coding	ABC-2 type transporter family protein	Encodes ABCG22, an ABC transporter gene. Mutation results in increased water transpiration and drought susceptibility.	ABC-2 type transporter family protein;(source:Araport11)
AT5G56610.2	protein_coding	Phosphotyrosine protein phosphatases superfamily protein	Encodes a phosphatidylglycerophosphate (PGP) phosphatase involved in the synthesis of plastidial Phosphatidylglycerol (PG) in conjunction with PGPP1 and PTPMT1 in root. PTPMT2.2 showed rather low expression levels and was detected only in stem and flower.	Phosphotyrosine protein phosphatases superfamily protein;(source:Araport11)
AT5G06690.2	protein_coding	WCRKC thioredoxin 1	Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma.  Contains a WCRKC motif. Functions in redox cascade with 2CPA and 2CPB via the ferredoxin-thioredoxin reductase (FTR)/thioredoxin (Trx) pathway to mediate the light-responsive reductive control of target proteins. Oxidizes redox-regulated proteins.	WCRKC thioredoxin 1;(source:Araport11)
AT5G51370.2	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT5G46610.2	protein_coding	Aluminium activated malate transporter family protein		aluminum activated malate transporter family protein;(source:Araport11)
AT5G46290.2	protein_coding	3-ketoacyl-acyl carrier protein synthase I	Encodes beta-ketoacyl-[acyl carrier protein] synthase I (KASI).  Crucial for fatty acid synthesis.  Plays a role in chloroplast division and embryo development.	3-ketoacyl-acyl carrier protein synthase I;(source:Araport11)
AT5G01810.2	protein_coding	CBL-interacting protein kinase 15	Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase.	CBL-interacting protein kinase 15;(source:Araport11)
AT5G25760.2	protein_coding	peroxin4	mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes.	peroxin4;(source:Araport11)
AT5G01700.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT5G13490.2	protein_coding	ADP/ATP carrier 2	Encodes mitochondrial ADP/ATP carrier	ADP/ATP carrier 2;(source:Araport11)
AT5G19480.2	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT5G19390.4	protein_coding	Rho GTPase activation protein (RhoGAP) with PH domain	Encodes a protein with similarity to REN1, a Rho GTPase activating protein.It is cytoplasmic and plasma membrane associated in interphase, but during mitosis  localizes to the CDZ/CDS in a POK-dependent manner.	Rho GTPase activation protein (RhoGAP) with PH domain-containing protein;(source:Araport11)
AT5G19390.3	protein_coding	Rho GTPase activation protein (RhoGAP) with PH domain	Encodes a protein with similarity to REN1, a Rho GTPase activating protein.It is cytoplasmic and plasma membrane associated in interphase, but during mitosis  localizes to the CDZ/CDS in a POK-dependent manner.	Rho GTPase activation protein (RhoGAP) with PH domain-containing protein;(source:Araport11)
AT5G41760.2	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT5G13450.2	protein_coding	delta subunit of Mt ATP synthase		delta subunit of Mt ATP synthase;(source:Araport11)
AT5G47080.3	protein_coding	casein kinase II  beta chain 1	Regulatory subunit beta of casein kinase II (CK2). purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)). One known substrate of CK2 is Phytochrome Interacting Factor 1 (PIF1). CK2-mediated phosphorylation enhances the light-induced degradation of PIF1 to promote photomorphogenesis.	casein kinase II beta chain 1;(source:Araport11)
AT5G13360.2	protein_coding	Auxin-responsive GH3 family protein		Auxin-responsive GH3 family protein;(source:Araport11)
AT5G19140.2	protein_coding	Aluminium induced protein with YGL and LRDR motifs		aluminum induced protein with YGL and LRDR motifs;(source:Araport11)
AT5G07190.2	protein_coding	seed gene 3	Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.	embryo-specific protein 3;(source:Araport11)
AT5G57240.2	protein_coding	OSBP(oxysterol binding protein)-related protein 4C		OSBP(oxysterol binding protein)-related protein 4C;(source:Araport11)
AT5G57410.2	protein_coding	Afadin/alpha-actinin-binding protein	Encodes a microtubule-associated protein.	Afadin/alpha-actinin-binding protein;(source:Araport11)
AT5G07380.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G62640.2	protein_coding	proline-rich family protein	nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC	proline-rich family protein;(source:Araport11)
AT5G06950.3	protein_coding	bZIP transcription factor family protein	Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment.	bZIP transcription factor family protein;(source:Araport11)
AT5G57000.2	protein_coding			DEAD-box ATP-dependent RNA helicase;(source:Araport11)
AT5G57180.3	protein_coding	chloroplast import apparatus 2	Transcription regulator responsible for  specific upregulation of the translocon genes  atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.	chloroplast import apparatus 2;(source:Araport11)
AT5G07090.2	protein_coding	Ribosomal protein S4 (RPS4A) family protein		Ribosomal protein S4 (RPS4A) family protein;(source:Araport11)
AT5G62890.3	protein_coding	Xanthine/uracil permease family protein		Xanthine/uracil permease family protein;(source:Araport11)
AT5G25220.2	protein_coding	KNOTTED1-like homeobox gene 3	A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia	homeobox protein knotted-1-like 3;(source:Araport11)
AT5G01360.2	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).The dwarf phenotype can only be seen in tbl3 tbl31 esk1 triple mutant. tbl3 and tbl31 are specifically involved in 3-O-monoacetylation of xylan.	trichome birefringence-like protein (DUF828);(source:Araport11)
AT5G07510.2	protein_coding	glycine-rich protein 14	encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers.	glycine-rich protein 14;(source:Araport11)
AT5G20810.2	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G48290.2	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G43380.3	protein_coding	type one serine/threonine protein phosphatase 6	encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.	type one serine/threonine protein phosphatase 6;(source:Araport11)
AT5G03380.2	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G03240.3	protein_coding	polyubiquitin 3	encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.	polyubiquitin 3;(source:Araport11)
AT5G53050.3	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G20830.2	protein_coding	sucrose synthase 1	Encodes a protein with sucrose synthase activity (SUS1).	sucrose synthase 1;(source:Araport11)
AT5G53420.2	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT5G48000.4	protein_coding	cytochrome P450, family 708, subfamily A, polypeptide 2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	cytochrome P450, family 708, subfamily A, polypeptide 2;(source:Araport11)
AT5G26850.2	protein_coding	Uncharacterized protein		Uncharacterized protein;(source:Araport11)
AT5G26850.3	protein_coding	Uncharacterized protein		Uncharacterized protein;(source:Araport11)
AT5G03520.2	protein_coding	RAB GTPase homolog 8C	GTPase that colocalizes with golgi and plasma membranes.	RAB GTPase homolog 8C;(source:Araport11)
AT5G27540.2	protein_coding	MIRO-related GTP-ase 1	Encodes a protein with similarity to GTPases that is localized to the mitochondrion. Involved in embryogenesis, pollen tube growth and required for mitochondrial development.	MIRO-related GTP-ase 1;(source:Araport11)
AT5G43430.2	protein_coding	electron transfer flavoprotein beta	Encodes the electron transfer flavoprotein ETF beta, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF alpha is At1g50940) in Arabidopsis.  Mutations of the ETF beta gene result in accelerated senescence and early death compared to wild-type during extended darkness.  Also involved in the catabolism of leucine and chlorophyll degradation pathway activated during darkness-induced carbohydrate deprivation.	electron transfer flavoprotein beta;(source:Araport11)
AT5G27290.2	protein_coding			stress regulated protein;(source:Araport11)
AT5G48160.2	protein_coding	Protein of unknown function (DUF1423)	Encodes a nuclear PHD finger protein that is functionally redundant with OBE1 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.	potyvirus VPg interacting protein (DUF1423);(source:Araport11)
AT5G64760.2	protein_coding	regulatory particle non-ATPase subunit 5B	Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a.	regulatory particle non-ATPase subunit 5B;(source:Araport11)
AT5G53340.2	protein_coding	Galactosyltransferase family protein	Encodes a hydroxyproline O-galactosyltransferase.	Galactosyltransferase family protein;(source:Araport11)
AT5G21060.2	protein_coding	Glyceraldehyde-3-phosphate dehydrogenase-like family protein		Glyceraldehyde-3-phosphate dehydrogenase-like family protein;(source:Araport11)
AT5G21060.3	protein_coding	Glyceraldehyde-3-phosphate dehydrogenase-like family protein		Glyceraldehyde-3-phosphate dehydrogenase-like family protein;(source:Araport11)
AT5G26980.2	protein_coding	syntaxin of plants 41	member of SYP4 Gene Family	syntaxin of plants 41;(source:Araport11)
AT5G26910.2	protein_coding		Encodes a member of the TRM superfamily, that plays a role in preprophase band formation during plant cell division and controls the robustness of the orientation of that cell division.	GPI-anchored adhesin-like protein;(source:Araport11)
AT5G20450.2	protein_coding			myosin;(source:Araport11)
AT5G53220.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G18407.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G47175.1	protein_coding	low-molecular-weight cysteine-rich 3	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 3;(source:Araport11)
AT5G40405.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G28288.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G43603.1	miRNA_primary_transcript	MIR166/MIR166F; miRNA	Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC	microRNA ath-MIR166f precursor;(source:Araport11)
AT5G63715.1	miRNA_primary_transcript	MIR166/MIR166G; miRNA	Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. Dominant gain of function alleles have enlarged meristems, fasciated stems and radialized leaves. During early embryo development expression is reciprocal to target mRNAs but then changes to overlapping expression with targets.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC	microRNA ath-MIR166g precursor;(source:Araport11)
AT5G67411.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT5G43518.1	protein_coding	Putative membrane lipoprotein	Encodes a cysteine-rich peptide that acts as a pollen tube attractant guiding pollen tubes to the ovular micropyle.  It is expressed in the synergid cell and appears to be secreted toward the funicular surface through the micropyle.	Putative membrane lipoprotein;(source:Araport11)
AT5G22791.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G03406.1	protein_coding	Class II aaRS and biotin synthetases superfamily protein		Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT5G04347.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G46874.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT5G65158.1	protein_coding	Lipase/lipooxygenase, PLAT/LH2 family protein		Lipase/lipooxygenase, PLAT/LH2 family protein;(source:Araport11)
AT5G06043.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G08505.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G36228.1	protein_coding	nucleic acid binding;zinc ion binding		nucleic acid binding / zinc ion binding protein;(source:Araport11)
AT5G08315.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G08717.1	miRNA_primary_transcript	MIR166/MIR166D; miRNA	Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC	microRNA ath-MIR166d precursor;(source:Araport11)
AT5G43401.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G51174.1	small_nucleolar_rna	SNOR30; snoRNA	Encodes a C/D box snoRNA (snoR30). Gb: AJ505639	SNOR30,snoRNA;(source:Araport11)
AT5G48945.1	protein_coding	low-molecular-weight cysteine-rich 46	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 46;(source:Araport11)
AT5G41471.1	small_nucleolar_rna	SNOR108; snoRNA	predicted to encode a C/D box type of snoRNA, also known as Ath-350 (GB: AJ505636). But, the submitted sequence of 110 nucleotides is only part of the 160 nucleotide sequence predicted by Northern blotting. It is assumed that a 5' portion of the gene is missing and its 5' end has not been conclusively mapped. Sequence analysis of this snoRNA suggests that it may not function like other C/D box family members that modify rRNAs or snRNAs. Its true biological target remains unknown. The promoter of this snoRNA has hallmarks of the snRNA promoters targeted by RNA polymerase II,  indicating that it might also have a TMG (2,2,7 trimethyguanosine) cap. SnoRNA108 may also play a novel role in ribosome biogenesis (Marker 2002).	SNOR108,snoRNA;(source:Araport11)
AT5G62627.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT5G52471.1	small_nucleolar_rna	U60.1F; snoRNA	Encodes a novel C/D box snoRNA expressed in seedlings. The snoRNAs are encoded in the fifth intron of FIB1.	U60.1F,snoRNA;(source:Araport11)
AT5G42242.1	protein_coding	low-molecular-weight cysteine-rich 57	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 57;(source:Araport11)
AT5G45875.1	protein_coding	SCR-like 27	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 27;(source:Araport11)
AT5G43516.1	pseudogene		pseudogene of a defensin-like (DEFL) family protein.	pseudogene of Putative membrane lipoprotein;(source:Araport11)
AT5G35195.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G48543.1	protein_coding	low-molecular-weight cysteine-rich 1	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 1;(source:Araport11)
AT5G46871.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT5G48515.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT5G45905.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of low-molecular-weight cysteine-rich 5;(source:Araport11)
AT5G66658.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G44973.1	protein_coding		Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT5G43525.1	protein_coding	Putative membrane lipoprotein	Encodes a cysteine-rich peptide that is expressed in the synergid cell and appears to be secreted toward the funicular surface through the micropyle.  Its closely related family members are involved in pollen tube guidance but this particular peptide lacks a conserved cysteine residue that appears critical for this function and does not affect pollen tube guidance.	Putative membrane lipoprotein;(source:Araport11)
AT5G52145.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of trypsin inhibitor protein 1;(source:Araport11)
AT5G48953.1	protein_coding	low-molecular-weight cysteine-rich 86	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 86;(source:Araport11)
AT5G41663.1	miRNA_primary_transcript	MIR319/MIR319B; miRNA	Encodes a microRNA that targets several TCP family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGGACUGAAGGGAGCUCCCU. Pri-mRNA coordinates for MIR319b (converted to TAIR10 based on PMID19304749): Chr5:  16660967-16660095 (reverse), length: 873 bp; exon coordinates: exon 1: 16660967 to 16660095; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR319b precursor;(source:Araport11)
AT5G60615.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G46873.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G38317.1	protein_coding	low-molecular-weight cysteine-rich 58	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 58;(source:Araport11)
AT5G43513.1	protein_coding	Putative membrane lipoprotein	Encodes a cysteine-rich peptide that acts as a pollen tube attractant guiding pollen tubes to the ovular micropyle.  It is expressed in the synergid cell and appears to be secreted toward the funicular surface through the micropyle.	Putative membrane lipoprotein;(source:Araport11)
AT5G50175.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G42232.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G18403.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT5G41905.1	miRNA_primary_transcript	MIR166/MIR166E; miRNA	Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC	microRNA ath-MIR166e precursor;(source:Araport11)
AT5G46877.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G24318.1	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G60805.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT5G38344.1	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT5G37473.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G33070.1	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of Defensin-like (DEFL) family protein;(source:Araport11)
AT5G47077.1	protein_coding	low-molecular-weight cysteine-rich 6	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 6;(source:Araport11)
AT5G60553.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G50423.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT5G23035.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT5G03795.1	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT5G37474.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT5G10945.1	miRNA_primary_transcript	MIR156D; miRNA	Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC	microRNA ath-MIR156d precursor;(source:Araport11)
AT5G26622.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT5G26622.2	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT5G16486.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT5G19473.1	protein_coding	RPM1-interacting protein 4 (RIN4) family protein		RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT5G42146.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G42797.1	protein_coding	low-molecular-weight cysteine-rich 28	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 28;(source:Araport11)
AT5G48595.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G42223.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G62623.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT5G32619.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G48905.1	protein_coding	low-molecular-weight cysteine-rich 12	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 12;(source:Araport11)
AT5G08712.1	miRNA_primary_transcript	MIR166/MIR166C; miRNA	Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC	microRNA ath-MIR166c precursor;(source:Araport11)
AT5G10572.1	small_nucleolar_rna	SNOR77; snoRNA	Encodes a H/ACA-box snoRNA (snoR77). Gb: AL353995	SNOR77,snoRNA;(source:Araport11)
AT5G19175.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT5G27807.1	miRNA_primary_transcript	MIR164/MIR164C; miRNA	Encodes a microRNA that targets several genes containing NAC domains including NAC1. Overexpression leads to decreased NAC1 mRNA and reduced lateral roots. Loss of function mutants have increased NAC1 and increased number of lateral roots.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGGAGAAGCAGGGCACGUGCG. Early extra petal mutant (eep1). Pri-mRNA coordinates for MIR164c (converted to TAIR10 based on PMID19304749): Chr5: 9852483-9853314 (forward), length: 832 bp; exon coordinates: exon 1: 9852483-9853314; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR164c precursor;(source:Araport11)
AT5G54225.1	protein_coding	low-molecular-weight cysteine-rich 83	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 83;(source:Araport11)
AT5G11977.1	miRNA_primary_transcript	MIR156E; miRNA	Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC	microRNA ath-MIR156e precursor;(source:Araport11)
AT5G56795.1	protein_coding	metallothionein 1B	one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance. The MT1b gene, however, is indicated to be inactive.	metallothionein 1B;(source:Araport11)
AT5G56369.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G46845.1	miRNA_primary_transcript	MIR160/MIR160C (MICRORNA160); miRNA	Encodes a microRNA that targets several ARF family members (ARF10, ARF16, ARF17). MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCUGGCUCCCUGUAUGCCA	microRNA ath-MIR160c precursor;(source:Araport11)
AT5G48605.1	protein_coding	Putative membrane lipoprotein	Encodes a defensin-like (DEFL) family protein.	Putative membrane lipoprotein;(source:Araport11)
AT5G45307.1	miRNA_primary_transcript	MIR168/MIR168B; miRNA	Encodes a microRNA that targets AGO1.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGCUUGGUGCAGGUCGGGAA.  MIR168a is highly expressed and predominantly produces a 21-nt miR168 species. By contrast, MIR168b is expressed at low levels and produces an equal amount of 21- and 22-nt miR168 species. Only the 21-nt miR168 is preferentially stabilized by AGO1, and consequently, the accumulation of the 22-nt but not the 21-nt miR168 is reduced when DCL1 activity is impaired. mir168a mutants with strongly reduced levels of 21-nt miR168 are viable but exhibit developmental defects, particularly during environmentally challenging conditions.	microRNA ath-MIR168b precursor;(source:Araport11)
AT5G56368.1	protein_coding		Encodes a defensin-like (DEFL) family protein.	defensin-like protein;(source:Araport11)
AT5G54215.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT5G39365.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G16453.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G26147.1	miRNA_primary_transcript	MIR156F; miRNA	Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC. miR156 limits plastochron length in developing leaf primordia.	microRNA ath-MIR156f precursor;(source:Araport11)
AT5G19172.1	protein_coding	Cysteine-rich protein	Encodes a defensin-like (DEFL) family protein.	Cysteine-rich protein;(source:Araport11)
AT5G51845.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G08055.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G36001.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G27495.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G01747.1	miRNA_primary_transcript	MIR164/MIR164B; miRNA	Encodes a microRNA that targets several genes containing NAC domains including NAC1. Overexpression leads to decreased NAC1 mRNA and reduced lateral roots. Loss of function mutants have increased NAC1 and increased number of lateral roots. Also targets ORE1 to negatively regulate the timing of leaf senescence.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGGAGAAGCAGGGCACGUGCA	microRNA ath-MIR164b precursor;(source:Araport11)
AT5G04275.1	miRNA_primary_transcript	MIR172/MIR172B; miRNA	Encodes a microRNA that targets several genes containing AP2 domains including AP2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AGAAUCUUGAUGAUGCUGCAU. Pri-mRNA coordinates for MIR172b (converted to TAIR10 based on PMID19304749): Chr5: 1188916-1187500 (reverse), length: 1417 bp; exon coordinates: exon 1: 1188916 to 1188742, exon 2: 1188623 to 1188583, exon 3: 1188383 to 1188133, exon 4: 1187852 to 1187500; mature miRNA and miRNA* are located on exon 3.	microRNA ath-MIR172b precursor;(source:Araport11)
AT5G55131.1	protein_coding	Protein of unknown function (PD694200)	Encodes a defensin-like (DEFL) family protein.	Protein of unknown function (PD694200);(source:Araport11)
AT5G52605.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G43285.1	protein_coding	Putative membrane lipoprotein	Encodes a cysteine-rich peptide that acts as a pollen tube attractant guiding pollen tubes to the ovular micropyle.  It is expressed in the synergid cell and appears to be secreted toward the funicular surface through the micropyle.	Putative membrane lipoprotein;(source:Araport11)
AT5G01881.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G66045.1	miRNA_primary_transcript	MIR170; miRNA	Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAUUGAGCCGUGUCAAUAUC	microRNA ath-MIR170 precursor;(source:Araport11)
AT5G23212.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G51545.1	protein_coding	low psii accumulation2	Encodes LPA2 (low psii accumulation2), an intrinsic thylakoid membrane protein required for efficient assembly of Photosystem II.	low psii accumulation2;(source:Araport11)
AT5G19315.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G19485.1	protein_coding	transferases;nucleotidyltransferases		transferases/nucleotidyltransferase;(source:Araport11)
AT5G47075.1	protein_coding	low-molecular-weight cysteine-rich 20	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 20;(source:Araport11)
AT5G23065.1	miRNA_primary_transcript	MIR162B; miRNA	Encodes a microRNA that targets DCL1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGAUAAACCUCUGCAUCCAG	microRNA ath-MIR162b precursor;(source:Araport11)
ATMG01120.1	protein_coding	NADH dehydrogenase 1B	Encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from three precursors, NAD1A, NAD1B, and NAD1C.	NADH dehydrogenase 1B;(source:Araport11)
ATMG00516.1	protein_coding	NADH dehydrogenase 1C	Encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from three precursors, NAD1A, NAD1B, and NAD1C.	NADH dehydrogenase 1C;(source:Araport11)
ATMG00060.1	protein_coding	NADH dehydrogenase subunit 5C	Mitochondrial NADH dehydrogenase subunit 5. The gene is trans-spliced from the three different pre-cursors, NAD5a, NAD5b and NAD5c.	NADH dehydrogenase subunit 5C;(source:Araport11)
ATMG00285.1	protein_coding	NADH dehydrogenase 2A	encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from two precursors, NAD2A and NAD2B.	NADH dehydrogenase 2A;(source:Araport11)
ATMG00513.1	protein_coding	NADH dehydrogenase 5A	Mitochondrial NADH dehydrogenase subunit 5. The gene is trans-spliced from three different pre-cursors, NAD5a, NAD5b and NAD5c.	NADH dehydrogenase 5A;(source:Araport11)
ATMG01320.1	protein_coding	NADH dehydrogenase 2B	encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from two precursors, NAD2A and NAD2B.	NADH dehydrogenase 2B;(source:Araport11)
ATMG00665.1	protein_coding	NADH dehydrogenase 5B	Mitochondrial NADH dehydrogenase subunit 5. The gene is trans-spliced from three different pre-cursors, NAD5a, NAD5b and NAD5c.	NADH dehydrogenase 5B;(source:Araport11)
ATMG00310.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
ATMG01340.1	pre_trna		tRNA-Met	pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
ATMG01250.1	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)		RNA-directed DNA polymerase (reverse transcriptase);(source:Araport11)
ATMG00220.1	protein_coding	apocytochrome b	Mitochondrial apocytochrome b (cob) gene encodes a subunit of the ubiquinol-cytochrome c oxidoreductase and is part of a 5 kb transcript. The transcript also contains a pseudogene for ribosomal protein S14 called RPS15 and a tRNA(Ser) gene. Both the Cob and RPS15 genes are edited in the transcript.	apocytochrome b;(source:Araport11)
ATMG00590.1	protein_coding	Cytochrome b/b6 protein		Cytochrome b/b6 protein;(source:Araport11)
ATMG00050.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01000.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00150.1	protein_coding			transmembrane protein;(source:Araport11)
ATMG01270.1	protein_coding	mitochondrial ribosomal protein S7	encodes a mitochondrial ribosomal protein S7, a constituent of the small subunit of the ribosomal complex	mitochondrial ribosomal protein S7;(source:Araport11)
ATMG01110.1	protein_coding	Mitovirus RNA-dependent RNA polymerase		Mitovirus RNA-dependent RNA polymerase;(source:Araport11)
ATMG00570.1	protein_coding	Sec-independent periplasmic protein translocase	encodes a protein of unknown function. The transcript has extensive RNA editing at the 3' end. Protein has orthologous in other plants and sequence is similar to E. coli ORFs orf154 and orf131, both of unknown function. So far, similar proteins are found only in plants and prokaryotes.	Sec-independent periplasmic protein translocase;(source:Araport11)
ATMG00630.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00690.1	protein_coding			FO-ATPase subunit;(source:Araport11)
ATMG00350.1	pre_trna		Mitochondrial-encoded proline-accepting tRNA.	pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
ATMG00010.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01400.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00710.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
ATMG00370.1	protein_coding	Ycf1 protein		Ycf1 protein;(source:Araport11)
ATMG01410.1	protein_coding	open reading frame 204		open reading frame 204;(source:Araport11)
ATMG00610.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
ATMG00490.1	protein_coding	Mitovirus RNA-dependent RNA polymerase		Mitovirus RNA-dependent RNA polymerase;(source:Araport11)
ATMG00110.1	protein_coding	cytochrome C biogenesis 206	Encodes a mitochondria-encoded cytochrome c biogenesis protein.	cytochrome C biogenesis 206;(source:Araport11)
ATMG00160.1	protein_coding	cytochrome oxidase 2	cytochrome c oxidase subunit 2	cytochrome oxidase 2;(source:Araport11)
ATMG00290.1	protein_coding	mitochondrial ribosomal protein S4	encodes a mitochondrial ribosomal protein S4, a constituent of the small subunit of the ribosomal complex	mitochondrial ribosomal protein S4;(source:Araport11)
ATMG01030.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00430.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01160.1	pre_trna		tRNA-Ser	pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
ATMG00470.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00700.1	pre_trna		tRNA-Lys	pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
ATMG01130.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01360.1	protein_coding	cytochrome  oxidase	cytochrome c oxidase subunit 1	cytochrome oxidase;(source:Araport11)
ATMG01050.1	protein_coding		ORF59	hypothetical protein;(source:Araport11)
ATMG00230.1	pre_trna		tRNA-Ser	pre-tRNA tRNA-Ser (anticodon: GGA);(source:Araport11, TAIR10)
ATMG00830.1	protein_coding	cytochrome C biogenesis 382	cytochrome c biogenesis orf382	cytochrome C biogenesis 382;(source:Araport11)
ATMG00280.1	protein_coding	Ribulose bisphosphate carboxylase large chain, catalytic domain		Ribulose bisphosphate carboxylase large chain, catalytic domain-containing protein;(source:Araport11)
ATMG00330.1	pre_trna		tRNA-Ser	pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
ATMG01350.1	protein_coding			transmembrane protein;(source:Araport11)
ATMG00200.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01300.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00480.1	protein_coding	Plant mitochondrial ATPase, F0 complex, subunit 8 protein	Encodes subunit 8 of the mitochondrial F(O) ATP synthase complex.	Plant mitochondrial ATPase, F0 complex, subunit 8 protein;(source:Araport11)
ATMG01070.1	pre_trna		tRNA-Asp	pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
ATMG01290.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00440.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00390.1	pre_trna		tRNA-Tyr	pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
ATMG00270.1	protein_coding	NADH dehydrogenase 6	NADH dehydrogenase subunit 6	NADH dehydrogenase 6;(source:Araport11)
ATMG00750.1	protein_coding	GAG/POL/ENV polyprotein		GAG/POL/ENV polyprotein;(source:Araport11)
ATMG00760.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01240.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00450.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01170.1	protein_coding	ATPase, F0 complex, subunit A protein	ATPase subunit 6	ATPase, F0 complex, subunit A protein;(source:Araport11)
ATMG00870.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00320.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00970.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00990.1	protein_coding	NADH dehydrogenase 3	NADH dehydrogenase subunit 3	NADH dehydrogenase 3;(source:Araport11)
ATMG01230.1	protein_coding			transmembrane protein;(source:Araport11)
ATMG00600.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01100.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00360.1	pre_trna		a mitochondrion-encoded tRNA for cysteine	pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
ATMG00560.1	protein_coding	Nucleic acid-binding, OB-fold-like protein	encodes a mitochondrial ribosomal protein L2, a constituent of the large subunit of the ribosomal complex	Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
ATMG00550.1	protein_coding			transcription factor-like protein;(source:Araport11)
ATMG00680.1	protein_coding			transmembrane protein;(source:Araport11)
ATMG00880.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00960.1	protein_coding	Cytochrome C assembly protein	Encodes a protein of the mitochondrial membrane which has been shown to be present in a number of unidentified complexes including a 500-KDa complex postulated to have heme lyase activity, in which another protein (AtCCMH, AT1G15220) is also involved. cytochrome c biogenesis orf203.	Cytochrome C assembly protein;(source:Araport11)
ATMG01310.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00540.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00670.1	protein_coding			transmembrane protein;(source:Araport11)
ATMG00790.1	pre_trna		tRNA-Tyr	pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
ATMG01140.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01010.1	protein_coding	Unknown conserved protein		Unknown conserved protein;(source:Araport11)
ATMG01060.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00770.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00800.1	pre_trna		A mitochondrial gene that encodes a glutamate-accepting tRNA whose transcription is regulated by the nuclear encoded sigma factor, Sig2.	pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
ATMG00940.1	protein_coding	DNA binding		DNA binding protein;(source:Araport11)
ATMG01020.1	protein_coding			transmembrane protein;(source:Araport11)
ATMG00850.1	protein_coding	DNA/RNA polymerases superfamily protein		DNA/RNA polymerases superfamily protein;(source:Araport11)
ATMG01280.1	protein_coding	Cytochrome C oxidase subunit II-like, transmembrane domain	encodes a cytochrome c oxidase subunit II	Cytochrome C oxidase subunit II-like, transmembrane domain-containing protein;(source:Araport11)
ATMG00900.1	protein_coding	cytochrome C biogenesis 256	cytochrome c biogenesis orf256	cytochrome C biogenesis 256;(source:Araport11)
ATMG00660.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00840.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00140.1	protein_coding			transmembrane protein;(source:Araport11)
ATMG01040.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00250.1	pre_trna		tRNA-Met	pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
ATMG00740.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00810.1	protein_coding	DNA/RNA polymerases superfamily protein		DNA/RNA polymerases superfamily protein;(source:Araport11)
ATMG00910.1	protein_coding			cytochrome B/B6 protein;(source:Araport11)
ATMG01190.1	protein_coding	ATP synthase subunit 1	ATPase subunit 1	ATP synthase subunit 1;(source:Araport11)
ATMG00240.1	protein_coding	Gag-Pol-related retrotransposon family protein		Gag-Pol-related retrotransposon family protein;(source:Araport11)
ATMG01150.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00580.1	protein_coding	NADH dehydrogenase subunit 4	NADH dehydrogenase subunit 4	NADH dehydrogenase subunit 4;(source:Araport11)
ATMG00890.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00730.1	protein_coding	cytochrome c oxidase subunit 3	Encodes cytochrome c oxidase subunit 3.	cytochrome c oxidase subunit 3;(source:Araport11)
ATMG00340.1	pre_trna		tRNA-Tyr	pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
ATMG01390.1	ribosomal_rna		Mitochondrial 18S ribosomal RNA, which is a component of the 30S small subunit of mitochondrial ribosome. The rRNA is degraded by a polynucleotide phosphorylase-like protein (AtmtPNPase).	rRNA;(source:Araport11)
ATMG00410.1	protein_coding	ATPase subunit 6-1	ATPase subunit 6	ATPase subunit 6-1;(source:Araport11)
ATMG00720.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00180.1	protein_coding	cytochrome C biogenesis 452	cytochrome c biogenesis orf452	cytochrome C biogenesis 452;(source:Araport11)
ATMG00780.1	pre_trna		tRNA-Ser	pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
ATMG00100.1	pre_trna		tRNA-Lys	pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
ATMG00400.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01260.1	protein_coding			transmembrane protein;(source:Araport11)
ATMG00980.1	protein_coding	Ribosomal protein S12/S23 family protein	ribosomal protein L2	Ribosomal protein S12/S23 family protein;(source:Araport11)
ATMG00950.1	pre_trna		tRNA-Gln	pre-tRNA tRNA-Gln (anticodon: TTG);(source:Araport11, TAIR10)
ATMG01200.1	protein_coding			ATPase, F1 complex, alpha subunit;(source:Araport11)
ATMG00120.1	protein_coding			reverse transcriptase zinc-binding protein;(source:Araport11)
ATMG00920.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00640.1	protein_coding	hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding	encodes a plant b subunit of mitochondrial ATP synthase based on structural similarity and the presence in the F(0) complex.	hydrogen ion transporting ATP synthases, rotational mechanism;(source:Araport11)
ATMG00030.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00510.1	protein_coding	NADH dehydrogenase subunit 7	NADH dehydrogenase subunit 7	NADH dehydrogenase subunit 7;(source:Araport11)
ATMG01370.1	protein_coding			transmembrane protein;(source:Araport11)
ATMG00300.1	protein_coding	Gag-Pol-related retrotransposon family protein		Gag-Pol-related retrotransposon family protein;(source:Araport11)
ATMG00460.1	pre_trna		tRNA-Ile	pre-tRNA tRNA-Ile (anticodon: CAT);(source:Araport11, TAIR10)
ATMG00210.1	protein_coding	ribosomal protein L5	encodes a mitochondrial ribosomal protein L5, a constituent of the large subunit of the ribosomal complex	ribosomal protein L5;(source:Araport11)
ATMG01380.1	ribosomal_rna		Mitochondrial 5S ribosomal RNA, which is a component of the 50S large subunit of mitochondrial ribosome.	rRNA;(source:Araport11)
ATMG00040.1	protein_coding	ATP synthase subunit C family protein		ATP synthase subunit C family protein;(source:Araport11)
ATMG00820.1	protein_coding	Reverse transcriptase (RNA-dependent DNA polymerase)		Reverse transcriptase (RNA-dependent DNA polymerase);(source:Araport11)
ATMG01210.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00500.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00080.1	protein_coding	ribosomal protein L16	encodes a mitochondrial ribosomal protein L16, which is a constituent of the large ribosomal subunit	ribosomal protein L16;(source:Araport11)
ATMG00170.1	protein_coding			transmembrane protein;(source:Araport11)
ATMG00260.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01080.1	protein_coding	mitochondrial F0-ATPase subunit 9	subunit 9 of mitochondrial F0-ATPase	mitochondrial F0-ATPase subunit 9;(source:Araport11)
ATMG01090.1	protein_coding	ATP synthase 9 mitochondrial		ATP synthase 9 mitochondrial;(source:Araport11)
ATMG00620.1	protein_coding			transmembrane protein;(source:Araport11)
ATMG00090.1	protein_coding	structural constituent of ribosome;protein binding	ribosomal protein S3	structural constituent of ribosome;(source:Araport11)
ATMG00380.1	pre_trna		tRNA-Asn	pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
ATMG00530.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01180.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01220.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG00860.1	protein_coding	DNA/RNA polymerases superfamily protein		DNA/RNA polymerases superfamily protein;(source:Araport11)
ATMG00020.1	ribosomal_rna		mitochondrial 26S ribosomal RNA protein	rRNA;(source:Araport11)
ATMG00520.1	protein_coding	Intron maturase, type II family protein		Intron maturase, type II family protein;(source:Araport11)
ATMG00190.1	pre_trna		tRNA-Gly	pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
ATMG00650.1	protein_coding	NADH dehydrogenase subunit 4L	Encodes NADH dehydrogenase subunit 4L.	NADH dehydrogenase subunit 4L;(source:Araport11)
ATMG00420.1	pre_trna		tRNA-Ser	pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
ATMG01330.1	protein_coding			LOW protein: NADH-ubiquinone oxidoreductase chain-like protein;(source:Araport11)
ATMG00070.1	protein_coding	NADH dehydrogenase subunit 9	NADH dehydrogenase subunit 9	NADH dehydrogenase subunit 9;(source:Araport11)
ATMG00130.1	protein_coding			hypothetical protein;(source:Araport11)
ATMG01275.1	protein_coding	NADH dehydrogenase 1A	Encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from three precursors, NAD1A, NAD1B, and NAD1C.	NADH dehydrogenase 1A;(source:Araport11)
ATMG00930.1	pre_trna		Represents a mitochondrially-encoded tryptophan accepting tRNA that is NOT expressed in the mitochondrion.	pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
ATCG00065.1	protein_coding	ribosomal protein S12A	chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript.	ribosomal protein S12A;(source:Araport11)
ATCG00905.1	protein_coding	ribosomal protein S12C	chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript.	ribosomal protein S12C;(source:Araport11)
ATCG01230.1	protein_coding	ribosomal protein S12B	chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript.	ribosomal protein S12B;(source:Araport11)
ATCG00720.1	protein_coding	photosynthetic electron transfer B	Encodes the cytochrome b(6) subunit of the cytochrome b6f complex.	photosynthetic electron transfer B;(source:Araport11)
ATCG00010.1	pre_trna		A chloroplast gene encoding a histidine-accepting tRNA.	pre-tRNA tRNA-His (anticodon: GTG);(source:Araport11, TAIR10)
ATCG00420.1	protein_coding	NADH dehydrogenase subunit J	Encodes NADH dehydrogenase subunit J.  Its transcription is increased upon sulfur depletion.	NADH dehydrogenase subunit J;(source:Araport11)
ATCG00080.1	protein_coding	photosystem II reaction center protein I	PSII I protein	photosystem II reaction center protein I;(source:Araport11)
ATCG00240.1	pre_trna		tRNA-Tyr	pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
ATCG00360.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a protein required for photosystem I assembly and stability. In Chlamydomonas reinhardtii, this protein seems to act as a PSI specific chaperone facilitating the assembly of the complex by interacting with PsaA and PsaD. A loss of function mutation in tobacco leads to a loss of photosystem I.	photosystem I assembly protein;(source:Araport11)
ATCG00830.1	protein_coding	ribosomal protein L2	encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex	ribosomal protein L2;(source:Araport11)
ATCG00630.1	protein_coding	PSAJ	Encodes subunit J of photosystem I.	PSAJ;(source:Araport11)
ATCG01150.1	pre_trna		tRNA-Arg	pre-tRNA tRNA-Arg (anticodon: ACG);(source:Araport11, TAIR10)
ATCG00390.1	pre_trna		tRNA-Thr	pre-tRNA tRNA-Thr (anticodon: TGT);(source:Araport11, TAIR10)
ATCG00600.1	protein_coding	PETG	Cytochrome b6-f complex, subunit V. Disruption of homologous gene in Chlamydomonas results in disruption of cytochrome b6-f complex.	PETG;(source:Araport11)
ATCG00490.1	protein_coding	ribulose-bisphosphate carboxylases	large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	ribulose-bisphosphate carboxylase;(source:Araport11)
ATCG01120.1	protein_coding	chloroplast ribosomal protein S15	encodes a chloroplast ribosomal protein S15, a constituent of the small subunit of the ribosomal complex	chloroplast ribosomal protein S15;(source:Araport11)
ATCG01200.1	pre_trna		tRNA-Ile	pre-tRNA tRNA-Ile (anticodon: GAT);(source:Araport11, TAIR10)
ATCG00990.1	pre_trna		tRNA-Asn	pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
ATCG00500.1	protein_coding	acetyl-CoA carboxylase carboxyl transferase subunit beta	Encodes the carboxytransferase beta subunit of the Acetyl-CoA carboxylase (ACCase) complex in plastids. This complex catalyzes the carboxylation of acetyl-CoA to produce malonyl-CoA, the first committed step in fatty acid synthesis.	acetyl-CoA carboxylase carboxyl transferase subunit beta;(source:Araport11)
ATCG00910.1	pre_trna		tRNA-Val	pre-tRNA tRNA-Val (anticodon: GAC);(source:Araport11, TAIR10)
ATCG00660.1	protein_coding	ribosomal protein L20	encodes a chloroplast ribosomal protein L20, a constituent of the large subunit of the ribosomal complex	ribosomal protein L20;(source:Araport11)
ATCG01010.1	protein_coding	NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein	Chloroplast encoded  NADH dehydrogenase unit.	NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein;(source:Araport11)
ATCG01060.1	protein_coding	iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding	Encodes the PsaC subunit of photosystem I.	iron-sulfur cluster binding;(source:Araport11)
ATCG00350.1	protein_coding	Photosystem I, PsaA/PsaB protein	Encodes psaA protein comprising the reaction center for photosystem I along with psaB protein; hydrophobic protein encoded by the chloroplast genome.	Photosystem I, PsaA/PsaB protein;(source:Araport11)
ATCG00020.1	protein_coding	photosystem II reaction center protein A	Encodes chlorophyll binding protein D1, a part of the photosystem II reaction center core	photosystem II reaction center protein A;(source:Araport11)
ATCG00840.1	protein_coding	ribosomal protein L23.1	One of two chloroplast genes that encode chloroplast ribosomal protein L23, a constituent of the large subunit of the ribosomal complex	ribosomal protein L23.1;(source:Araport11)
ATCG00520.1	protein_coding	unfolded protein binding	Encodes a protein required for photosystem I assembly and stability. In cyanobacteria, loss of function mutation in this gene increases PSII/PSI ratio without any influence on photoautotrophic growth.	unfolded protein binding protein;(source:Araport11)
ATCG00150.1	protein_coding	ATPase, F0 complex, subunit A protein	Encodes a subunit of ATPase complex CF0, which is a proton channel that supplies the proton motive force to drive ATP synthesis by CF1 portion of the complex.	ATPase, F0 complex, subunit A protein;(source:Araport11)
ATCG00980.1	pre_trna		tRNA-Arg	pre-tRNA tRNA-Arg (anticodon: ACG);(source:Araport11, TAIR10)
ATCG01110.1	protein_coding	NAD(P)H dehydrogenase subunit H	Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein.  Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4.	NAD(P)H dehydrogenase subunit H;(source:Araport11)
ATCG00120.1	protein_coding	ATP synthase subunit alpha	Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast.	ATP synthase subunit alpha;(source:Araport11)
ATCG00220.1	protein_coding	photosystem II reaction center protein M	PSII low MW protein	photosystem II reaction center protein M;(source:Araport11)
ATCG01040.1	protein_coding	Cytochrome C assembly protein		Cytochrome C assembly protein;(source:Araport11)
ATCG00860.1	protein_coding	Chloroplast Ycf2;ATPase, AAA type, core	Encodes an unknown protein. This gene is regulated by AtSIG6 transcriptionally.Strong interaction with TIC inner envelope protein translocon which consists of Tic20/Tic56/Tic100/Tic214(Ycf1)(DOI:10.1105/tpc.18.00357).	Chloroplast Ycf2;(source:Araport11)
ATCG00460.1	pre_trna		Chloroplast encoded tRNA-Met gene.	pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
ATCG00740.1	protein_coding	RNA polymerase subunit alpha	RNA polymerase alpha subunit	RNA polymerase subunit alpha;(source:Araport11)
ATCG00800.1	protein_coding	structural constituent of ribosome	encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex	structural constituent of ribosome;(source:Araport11)
ATCG00410.1	pre_trna		chloroplast TRNF	pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
ATCG00300.1	protein_coding	YCF9	encodes PsbZ, which is a subunit of photosystem II. In Chlamydomonas, this protein has been shown to be essential in the interaction between PS II and the light harvesting complex II.	YCF9;(source:Araport11)
ATCG01050.1	protein_coding	NADH-Ubiquinone/plastoquinone (complex I) protein	Represents a plastid-encoded subunit of a NAD(P)H dehydrogenase complex.  Its mRNA is edited at four positions.  Translation data is not available for this gene.	NADH-plastoquinone oxidoreductase subunit;(source:Araport11)
ATCG01020.1	protein_coding	ribosomal protein L32	encodes a chloroplast ribosomal protein L32, a constituent of the large subunit of the ribosomal complex	ribosomal protein L32;(source:Araport11)
ATCG01290.1	pre_trna		tRNA-Ile	pre-tRNA tRNA-Ile (anticodon: CAT);(source:Araport11, TAIR10)
ATCG01030.1	pre_trna		tRNA-Leu	pre-tRNA tRNA-Leu (anticodon: TAG);(source:Araport11, TAIR10)
ATCG00340.1	protein_coding	Photosystem I, PsaA/PsaB protein	Encodes the D1 subunit of photosystem I reaction center.	Photosystem I, PsaA/PsaB protein;(source:Araport11)
ATCG00780.1	protein_coding	ribosomal protein L14	encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex	ribosomal protein L14;(source:Araport11)
ATCG00320.1	pre_trna		tRNA-Phe	pre-tRNA tRNA-Met;(source:Araport11, TAIR10)
ATCG00650.1	protein_coding	ribosomal protein S18	chloroplast-encoded ribosomal protein S18	ribosomal protein S18;(source:Araport11)
ATCG00510.1	protein_coding	photsystem I subunit I	Encodes subunit I of photosystem I.	photsystem I subunit I;(source:Araport11)
ATCG00140.1	protein_coding	ATP synthase subunit C family protein	ATPase III subunit	ATP synthase subunit C family protein;(source:Araport11)
ATCG00230.1	pre_trna		tRNA-Asp	pre-tRNA tRNA-Asp (anticodon: GTC);(source:Araport11, TAIR10)
ATCG00290.1	pre_trna		tRNA-Ser	pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
ATCG00710.1	protein_coding	photosystem II reaction center protein H	Encodes a 8 kD phosphoprotein that is a component of the photosystem II oxygen evolving core. Its exact molecular function has not been determined but it may play a role in mediating electron transfer between the secondary quinone acceptors, QA and QB, associated with the acceptor side of PSII.	photosystem II reaction center protein H;(source:Araport11)
ATCG01140.1	pre_trna		tRNA-Asn	pre-tRNA tRNA-Asn (anticodon: GTT);(source:Araport11, TAIR10)
ATCG00400.1	pre_trna		tRNA-Leu	pre-tRNA tRNA-Leu (anticodon: TAA);(source:Araport11, TAIR10)
ATCG01300.1	protein_coding	ribosomal protein L23	One of two chloroplast genes that encode  chloroplast ribosomal protein L23, a constituent of the large subunit of the ribosomal complex	ribosomal protein L23;(source:Araport11)
ATCG00430.1	protein_coding	photosystem II reaction center protein G	Encodes a protein which was originally thought to be part of photosystem II but its wheat homolog was later shown to encode for subunit K of NADH dehydrogenase.	photosystem II reaction center protein G;(source:Araport11)
ATCG00170.1	protein_coding	DNA-directed RNA polymerase family protein	RNA polymerase beta' subunit-2	DNA-directed RNA polymerase family protein;(source:Araport11)
ATCG00260.1	pre_trna		tRNA-Thr	pre-tRNA tRNA-Thr (anticodon: GGT);(source:Araport11, TAIR10)
ATCG01310.1	protein_coding	ribosomal protein L2	encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex	ribosomal protein L2;(source:Araport11)
ATCG00250.1	pre_trna		this chloroplast gene encodes a UUC tRNA whose expression is regulated by SIG2.	pre-tRNA tRNA-Glu (anticodon: TTC);(source:Araport11, TAIR10)
ATCG00560.1	protein_coding	photosystem II reaction center protein L	PSII L protein	photosystem II reaction center protein L;(source:Araport11)
ATCG00440.1	protein_coding	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein	Encodes NADH dehydrogenase D3 subunit of the chloroplast NAD(P)H dehydrogenase complex	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein;(source:Araport11)
ATCG00070.1	protein_coding	photosystem II reaction center protein K precursor	PSII K protein	photosystem II reaction center protein K precursor;(source:Araport11)
ATCG00200.1	pre_trna		a chloroplast-encoded tRNA for cysteine	pre-tRNA tRNA-Cys (anticodon: GCA);(source:Araport11, TAIR10)
ATCG01190.1	pre_trna		tRNA-Ala	pre-tRNA tRNA-Ala (anticodon: TGC);(source:Araport11, TAIR10)
ATCG00950.1	ribosomal_rna		chloroplast-encoded 23S ribosomal RNA	rRNA;(source:Araport11)
ATCG01160.1	ribosomal_rna		Chloroplast-encoded 5S ribosomal RNA, which is a component of the 50S large subunit of the plastidic ribosome.	rRNA;(source:Araport11)
ATCG00130.1	protein_coding	ATPase, F0 complex, subunit B/B', bacterial/chloroplast	ATPase F subunit.	ATPase, F0 complex, subunit B/B, bacterial/chloroplast;(source:Araport11)
ATCG00680.1	protein_coding	photosystem II reaction center protein B	encodes for CP47, subunit of the photosystem II reaction center.	photosystem II reaction center protein B;(source:Araport11)
ATCG01100.1	protein_coding	NADH dehydrogenase family protein	NADH dehydrogenase ND1	NADH dehydrogenase family protein;(source:Araport11)
ATCG00060.1	pre_trna		tRNA-Gln	pre-tRNA tRNA-Gln (anticodon: TTG);(source:Araport11, TAIR10)
ATCG00870.1	protein_coding	Protein precursor Ycf15, putative, chloroplast		Protein precursor Ycf15, putative, chloroplast;(source:Araport11)
ATCG00110.1	pre_trna		tRNA-Arg	pre-tRNA tRNA-Arg (anticodon: TCT);(source:Araport11, TAIR10)
ATCG00090.1	pre_trna		tRNA-Ser	pre-tRNA tRNA-Ser (anticodon: GCT);(source:Araport11, TAIR10)
ATCG00810.1	protein_coding	ribosomal protein L22	encodes a chloroplast ribosomal protein L22, a constituent of the large subunit of the ribosomal complex	ribosomal protein L22;(source:Araport11)
ATCG00880.1	pre_trna		tRNA-Leu	pre-tRNA tRNA-Leu (anticodon: CAA);(source:Araport11, TAIR10)
ATCG00450.1	pre_trna		tRNA-Val	pre-tRNA tRNA-Val (anticodon: TAC);(source:Araport11, TAIR10)
ATCG01080.1	protein_coding	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	NADH dehydrogenase ND6	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6;(source:Araport11)
ATCG00760.1	protein_coding	ribosomal protein L36	encodes a chloroplast ribosomal protein L36, a constituent of the large subunit of the ribosomal complex	ribosomal protein L36;(source:Araport11)
ATCG00570.1	protein_coding	photosystem II reaction center protein F	PSII cytochrome b559	photosystem II reaction center protein F;(source:Araport11)
ATCG00480.1	protein_coding	ATP synthase subunit beta	chloroplast-encoded gene for beta subunit of ATP synthase	ATP synthase subunit beta;(source:Araport11)
ATCG00210.1	protein_coding	electron transporter, transferring electrons within cytochrome b6/f complex of photosystem IIs		electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II;(source:Araport11)
ATCG00590.1	protein_coding	electron carriers		electron carrier;(source:Araport11)
ATCG00730.1	protein_coding	photosynthetic electron transfer D	A chloroplast gene encoding subunit IV of the cytochrome b6/f complex	photosynthetic electron transfer D;(source:Araport11)
ATCG00380.1	protein_coding	chloroplast ribosomal protein S4	Chloroplast encoded ribosomal protein S4	chloroplast ribosomal protein S4;(source:Araport11)
ATCG00330.1	protein_coding	chloroplast ribosomal protein S14	30S chloroplast ribosomal protein S14	chloroplast ribosomal protein S14;(source:Araport11)
ATCG00670.1	protein_coding	plastid-encoded CLP P	Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).	plastid-encoded CLP P;(source:Araport11)
ATCG00940.1	pre_trna		tRNA-Ala	pre-tRNA tRNA-Ala (anticodon: TGC);(source:Araport11, TAIR10)
ATCG00050.1	protein_coding	ribosomal protein S16	Homologous to the bacterial ribosomal protein S16	ribosomal protein S16;(source:Araport11)
ATCG01270.1	protein_coding	Protein precursor Ycf15, putative, chloroplast		Protein precursor Ycf15, putative, chloroplast;(source:Araport11)
ATCG00790.1	protein_coding	ribosomal protein L16	chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit	ribosomal protein L16;(source:Araport11)
ATCG00270.1	protein_coding	photosystem II reaction center protein D	PSII D2 protein	photosystem II reaction center protein D;(source:Araport11)
ATCG01240.1	protein_coding	ribosomal protein S7	30S chloroplast ribosomal protein S7	ribosomal protein S7;(source:Araport11)
ATCG00580.1	protein_coding	photosystem II reaction center protein E	PSII cytochrome b559. There have been many speculations about the function of Cyt b559, but the most favored at present is that it plays a protective role by acting as an electron acceptor or electron donor under conditions when electron flow through PSII is not optimized.	photosystem II reaction center protein E;(source:Araport11)
ATCG00530.1	protein_coding	CemA-like proton extrusion protein-related		CemA-like proton extrusion protein-like protein;(source:Araport11)
ATCG00040.1	protein_coding	maturase K	Encodes a maturase located in the trnK intron in the chloroplast genome.	maturase K;(source:Araport11)
ATCG01130.1	protein_coding	Ycf1 protein		Ycf1 protein;(source:Araport11)
ATCG01220.1	pre_trna		tRNA-Val	pre-tRNA tRNA-Val (anticodon: GAC);(source:Araport11, TAIR10)
ATCG00100.1	pre_trna		tRNA-Gly	pre-tRNA tRNA-Gly (anticodon: TCC);(source:Araport11, TAIR10)
ATCG00310.1	pre_trna		tRNA-Gly	pre-tRNA tRNA-Gly (anticodon: GCC);(source:Araport11, TAIR10)
ATCG00540.1	protein_coding	photosynthetic electron transfer A	Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2.	photosynthetic electron transfer A;(source:Araport11)
ATCG00750.1	protein_coding	ribosomal protein S11	30S chloroplast ribosomal protein S11	ribosomal protein S11;(source:Araport11)
ATCG00930.1	pre_trna		tRNA-Ile	pre-tRNA tRNA-Ile (anticodon: GAT);(source:Araport11, TAIR10)
ATCG00160.1	protein_coding	ribosomal protein S2	Chloroplast ribosomal protein S2	ribosomal protein S2;(source:Araport11)
ATCG00550.1	protein_coding	photosystem II reaction center protein J	PSII component	photosystem II reaction center protein J;(source:Araport11)
ATCG00960.1	ribosomal_rna		Chloroplast-encoded 4.5S ribosomal RNA, which is a constituent of the 50S large subunit of plastidic ribosome.	rRNA;(source:Araport11)
ATCG00030.1	pre_trna		Lysine tRNA	pre-tRNA tRNA-Lys (anticodon: TTT);(source:Araport11, TAIR10)
ATCG00640.1	protein_coding	ribosomal protein L33	encodes a chloroplast ribosomal protein L33, a constituent of the large subunit of the ribosomal complex	ribosomal protein L33;(source:Araport11)
ATCG01280.1	protein_coding	Chloroplast Ycf2;ATPase, AAA type, core		Chloroplast Ycf2;(source:Araport11)
ATCG00180.1	protein_coding	DNA-directed RNA polymerase family protein	RNA polymerase beta' subunit-1	DNA-directed RNA polymerase family protein;(source:Araport11)
ATCG00820.1	protein_coding	ribosomal protein S19	Encodes a 6.8-kDa protein of the small ribosomal subunit.	ribosomal protein S19;(source:Araport11)
ATCG01000.1	protein_coding	Ycf1 protein		Ycf1 protein;(source:Araport11)
ATCG00890.1	protein_coding	NADH-Ubiquinone/plastoquinone (complex I) protein	NADH dehydrogenase ND2	NADH-Ubiquinone/plastoquinone (complex I) protein;(source:Araport11)
ATCG00470.1	protein_coding	ATP synthase epsilon chain	ATPase epsilon subunit	ATP synthase epsilon chain;(source:Araport11)
ATCG01260.1	pre_trna		tRNA-Leu	pre-tRNA tRNA-Leu (anticodon: CAA);(source:Araport11, TAIR10)
ATCG00970.1	ribosomal_rna		chloroplast-encoded 5S ribosomal RNA	rRNA;(source:Araport11)
ATCG00610.1	pre_trna		tRNA-Trp	pre-tRNA tRNA-Trp (anticodon: CCA);(source:Araport11, TAIR10)
ATCG00700.1	protein_coding	photosystem II reaction center protein N	PSII low MW protein	photosystem II reaction center protein N;(source:Araport11)
ATCG00190.1	protein_coding	RNA polymerase subunit beta	Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution.	RNA polymerase subunit beta;(source:Araport11)
ATCG00620.1	pre_trna		tRNA-Pro	pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10)
ATCG00770.1	protein_coding	ribosomal protein S8	chloroplast 30S ribosomal protein S8	ribosomal protein S8;(source:Araport11)
ATCG01090.1	protein_coding	NADPH dehydrogenases	Encodes subunit of the chloroplast NAD(P)H dehydrogenase complex	NADPH dehydrogenase;(source:Araport11)
ATCG00920.1	ribosomal_rna		chloroplast-encoded 16S ribosomal RNA	rRNA;(source:Araport11)
ATCG00370.1	pre_trna		tRNA-Ser	pre-tRNA tRNA-Ser (anticodon: GGA);(source:Araport11, TAIR10)
ATCG01250.1	protein_coding	NADH-Ubiquinone/plastoquinone (complex I) protein	NADH dehydrogenase ND2	NADH-quinone oxidoreductase protein;(source:Araport11)
ATCG00280.1	protein_coding	photosystem II reaction center protein C	chloroplast gene encoding a CP43 subunit of  the photosystem II reaction center. promoter contains a blue-light responsive element.	photosystem II reaction center protein C;(source:Araport11)
ATCG00900.1	protein_coding	Ribosomal protein S7p/S5e family protein	encodes a chloroplast ribosomal protein S7, a constituent of the small subunit of the ribosomal complex	Ribosomal protein S7p/S5e family protein;(source:Araport11)
ATCG01070.1	protein_coding	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L	NADH dehydrogenase ND4L	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;(source:Araport11)
ATCG00850.1	pre_trna		tRNA-Ile	pre-tRNA tRNA-Ile (anticodon: CAT);(source:Araport11, TAIR10)
ATCG01210.1	ribosomal_rna		chloroplast-encoded 16S ribosomal RNA	rRNA;(source:Araport11)
ATCG01180.1	ribosomal_rna		chloroplast-encoded 23S ribosomal RNA	rRNA;(source:Araport11)
ATCG01170.1	ribosomal_rna		chloroplast-encoded 4.5S ribosomal RNA, which is part of the 50S large ribosomal subunit in plastids	rRNA;(source:Araport11)
ATCG00690.1	protein_coding	photosystem II reaction center protein T	Encodes photosystem II 5 kD protein subunit PSII-T. This is a plastid-encoded gene (PsbTc) which also has a nuclear-encoded paralog (PsbTn).	photosystem II reaction center protein T;(source:Araport11)
CIM9	unknown		a genetic locus involved in systemic acquired resistance. Mutant lines exhibit constitutive expression of PR1 promoter-reporter transgene and has high levels of salicylic acid.	
CIM14	unknown		a genetic locus involved in systemic acquired resistance. Mutant lines exhibit constitutive expression of PR1 promoter-reporter transgene and has high levels of salicylic acid.	
CIM13	unknown		a genetic locus involved in systemic acquired resistance. Mutant lines exhibit constitutive expression of PR1 promoter-reporter transgene and has high levels of salicylic acid.	
HRL1	unknown		Mutants develop HR-like necrotic lesions and displays enhanced resistance to virulent bacterial and oomycete pathogens. Constitutively expresses SA- and ET/JA-responsive defense genes, accumulates elevated levels of ROS, SA and ethylene.	
DMR2	unknown		Susceptible to downy mildew fungus Hyaloperonospora parasitica	
DMR3	unknown		Susceptible to downy mildew fungus Hyaloperonospora parasitica.Mutants showed resistance to fungal, bacterial pathogen with enhanced defense gene expression.	
DMR4	unknown		Susceptible to downy mildew fungus Hyaloperonospora parasitica.	
DMR5	unknown		Susceptible to downy mildew fungus Hyaloperonospora parasitica.	
ENL7	unknown		Genetic locus involved in root hair development. Located distal of ciw10 on chromosome 5.	
Ara1	other_rna		Encodes one of two functional hammerhead ribozymes in Arabidopsis.  Located between At1g30860 and At1g30870.	
Ara2	other_rna		Encodes one of two functional hammerhead ribozymes in Arabidopsis. Located in the 3' end of At3g30870.	
DER2	unknown		Genetic locus affecting root hair development.  Located between markers ciw9 and ciw10 on chromosome 5, not allelic to der9.	
DER5	unknown		Genetic locus affecting root hair development.  Located 10 cM proximal of nga1107.	
DER6	unknown		Genetic locus involved in root hair development.  Located on chromosome 3, close to nga172.	
DER7	unknown		Genetic locus involved in root hair development.  Located 1 cM distal of nga1126 on chromosome 3.	
DER8	unknown		Genetic locus involved in root hair development.  Located 1 cM distal of ciw4 on chromosome 3.	
ITB2	unknown		A member of itb family that controls trichome morphogenesis. Mutations have a minor effect in trichome branch number, but a large effect on trichome branch and stalk expansion.	
ITB4	unknown		A member of itb family that controls trichome morphogenesis. Mutations have a minor effect in trichome branch number, but a large effect on trichome branch and stalk expansion.	
RFO5	unknown		Genetic locus involved in resistance to Fusarium oxysporum.	
FTQ7	unknown			
HED1	unknown		Acts as a negative regulator of HR. Mapped to a 22-cM region on the bottom of chromosome 5 between the markers RPS4-NT and LFY3.	
HCA	unknown			
PUP3	unknown		Genetic locus involved in regulating acid phosphatase levels in vivo.  Maps to 68.4 +/- 6.0 centimorgans on chromosome 5. Mutation affects AtPAP12 protein but not transcript levels.	
HHRz Ara1	protein_coding			
RIB1	unknown		Genetic locus involved in the transport of the auxin indole-3-butyric acid (IBA). Also affects gravitropism and root development. Maps near the bottom of chromosome 1, telomeric to g17311.	
SMD3	unknown		Genetic locus involved in cell-to-cell trafficking of RNA mediated gene silencing.	
CIR3	unknown		Genetic locus involved in the disease resistance signalling network.  Mutants display enhanced resistance to the necrotrophic pathogen Botrytis cinerea. Mapped to chromosome  three, approximately 30 cM from nga6.	
ENL1	unknown		Genetic locus that enhances the lrx1 mutant root hair phenotype. Maps distal of ciw4 on chromosome 3. The root hairs of enl1/lrx1 double mutants are shorter than wild  type, wavy, branch, and undergo random changes in the growth direction. In addition, the root hair base is frequently larger than in wild type.	
ENL5	unknown		Genetic locus that enhances the lrx1 mutant root hair phenotype. Maps to the  top of chromosome 1, in the proximity of nga 63.	
RPP31	unknown		A genetic locus that confers resistance to downy mildew in true leaves but not in seedlings.	
SFO1	unknown		Encodes a putative RING-H2-type E3 ubiquitin ligase from Arabidopsis and is involved in the non-host response to F. oxysporum (Panama disease) infection and in the host response to B. cinerea.	
FCP1	protein_coding			
ABS1	unknown			
ABS1	unknown			
LPI1	unknown		Effects morphological changes induced by low phosphorous, including primary root elongation, lateral root formation, root hair elongation and changes in the root/shoot ratio but not in changes such, anthocyanin accumulation. Maintains an indeterminate root development scheme, during low phosphorous condition. Mutants show reduced lateral root density.Also, alters the response of other genes P deprivation.	
LIKE15	unknown			
LPI2	unknown		Effects morphological changes induced by low phosphorous, including primary root elongation, lateral root formation, root hair elongation and changes in the root/shoot ratio but not in changes such, anthocyanin accumulation. Maintains an indeterminate root development scheme, during low phosphorous condition. Mutants show reduced lateral root density.Also, alters the response of other genes P deprivation.	
LPI3	unknown		Effects morphological changes induced by low phosphorous, including primary root elongation, and lateral root formation. Maintains an indeterminate root development scheme, during low phosphorous condition. Mutants show reduced lateral root density.	
LPI4	unknown		Effects morphological changes induced by low phosphorous, including primary root elongation, and lateral root formation. Maintains an indeterminate root development scheme, during low phosphorous condition. Mutants show reduced lateral root density.	
BOX17	unknown			
BOX20	unknown			
PUB21	unknown			
LIKE24	unknown			
KT1	unknown			
LIKE80	unknown			
TRW13	unknown			
TRW134	unknown			
TRW71	unknown			
FKBP20	unknown			
EER2	unknown		Genetic locus involved in the ethylene response.  The mutant characterized is likely to represent a chromosomal rearrangement. EER2 was linked to the top arm of chromosome 4 and to the center of chromosome 1. For chromosome 4, the eer2 phenotype showed 100% linkage with BA-12L (15.2 cM) and nga8 (26.56 cM) (tested on 148 homozygous mutant plants). For chromosome 1, linkage analysis placed the EER2 locus at the position of markers SM19_96.2 (16 318 151–16 318 224 bp, 60 cM) and SM19_106.4 (17 715 935–17 716 018 bp, 68 cM), here again 100% linkage was observed (tested on 145 homozygous mutant plants).	
DES4	unknown			
OPC11	unknown			
EDT2	unknown			
LIKE8	unknown			
ST52	unknown			
HERC2	unknown			
STA	unknown		Gene required for the specification of primary branching of trichomes.	
LIKE18	unknown			
CT24	unknown			
AT1G01060.4	protein_coding	Homeodomain-like superfamily protein	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	Homeodomain-like superfamily protein;(source:Araport11)
AT1G01100.3	protein_coding	60S acidic ribosomal protein family	Co-orthologous gene of large ribosomal subunit protein RPP1.	60S acidic ribosomal protein family;(source:Araport11)
AT1G01100.4	protein_coding	60S acidic ribosomal protein family	Co-orthologous gene of large ribosomal subunit protein RPP1.	60S acidic ribosomal protein family;(source:Araport11)
AT1G01260.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	bHLH13 interacts with JAZ proteins, and functions redundantly with bHLH3, bHLH14 and bHLH17 to negatively regulate jasmonate responses.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G01448.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G01450;(source:Araport11)
AT1G01448.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G01450;(source:Araport11)
AT1G01448.3	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G01450;(source:Araport11)
AT1G01620.2	protein_coding	plasma membrane intrinsic protein 1C	a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.	plasma membrane intrinsic protein 1C;(source:Araport11)
AT1G01800.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G01830.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G01830.3	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G01910.4	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G02145.1	protein_coding	homolog of asparagine-linked glycosylation 12		homolog of asparagine-linked glycosylation 12;(source:Araport11)
AT1G02145.2	protein_coding	homolog of asparagine-linked glycosylation 12		homolog of asparagine-linked glycosylation 12;(source:Araport11)
AT1G02145.3	protein_coding	homolog of asparagine-linked glycosylation 12		homolog of asparagine-linked glycosylation 12;(source:Araport11)
AT1G02160.2	protein_coding	Cox19 family protein (CHCH motif)		Cox19 family protein (CHCH motif);(source:Araport11)
AT1G02228.1	transposable_element_gene	transposable element gene	pseudogene of no apical meristem (NAM) family protein	transposable_element_gene;(source:Araport11)
AT1G02470.2	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G02952.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G02950;(source:Araport11)
AT1G03160.2	protein_coding	FZO-like	A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.	FZO-like protein;(source:Araport11)
AT1G03520.2	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G04295.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G04290;(source:Araport11)
AT1G04300.2	protein_coding	TRAF-like superfamily protein	Encodes MUSE13, a TRAF domain protein. Regulates the turnover of nucleotide-binding domain and leucine-rich repeat-containing (NLR) immune receptors SNC1 and RPS2. Loss of both MUSE13 and MUSE14 leads to enhanced pathogen resistance, NLR accumulation, and autoimmunity.In addition, MUSE13/14 physically interact with ATG6 and appear to regulate ATG6 ubiquitination and thus formation of autophagosomes.	TRAF-like superfamily protein;(source:Araport11)
AT1G04300.3	protein_coding	TRAF-like superfamily protein	Encodes MUSE13, a TRAF domain protein. Regulates the turnover of nucleotide-binding domain and leucine-rich repeat-containing (NLR) immune receptors SNC1 and RPS2. Loss of both MUSE13 and MUSE14 leads to enhanced pathogen resistance, NLR accumulation, and autoimmunity.In addition, MUSE13/14 physically interact with ATG6 and appear to regulate ATG6 ubiquitination and thus formation of autophagosomes.	TRAF-like superfamily protein;(source:Araport11)
AT1G04490.2	protein_coding	Protein of unknown function (DUF3527)		hypothetical protein (DUF3527);(source:Araport11)
AT1G04555.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G04778.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G04945.1	protein_coding	HIT-type Zinc finger family protein		HIT-type Zinc finger family protein;(source:Araport11)
AT1G04945.2	protein_coding	HIT-type Zinc finger family protein		HIT-type Zinc finger family protein;(source:Araport11)
AT1G04960.2	protein_coding	Protein of unknown function (DUF1664)		golgin family A protein (DUF1664);(source:Araport11)
AT1G05170.2	protein_coding	Galactosyltransferase family protein		Galactosyltransferase family protein;(source:Araport11)
AT1G05790.2	protein_coding	lipase class 3 family protein		lipase class 3 family protein;(source:Araport11)
AT1G05830.2	protein_coding	trithorax-like protein 2	Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.	trithorax-like protein 2;(source:Araport11)
AT1G05835.1	protein_coding	PHD finger protein	PhD finger protein.	PHD finger protein;(source:Araport11)
AT1G06148.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06190.2	protein_coding	Rho termination factor	Encodes a  novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.	Rho termination factor;(source:Araport11)
AT1G06265.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G06260;(source:Araport11)
AT1G06265.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G06260;(source:Araport11)
AT1G06500.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G06500.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G06515.1	protein_coding	Protein of unknown function (DUF3317)	Encodes a 56-amino acid polypeptide with low but significant similarity to human small subunit of serine palmitoyltransferase that localizes to the ER and physically interacts with and greatly stimulates the activity of LCB1/LCB2 heterodimer ser palmitoyltransferase complex. Mutants have low pollen viability.	transmembrane protein, putative (DUF3317);(source:Araport11)
AT1G06515.2	protein_coding	Protein of unknown function (DUF3317)	Encodes a 56-amino acid polypeptide with low but significant similarity to human small subunit of serine palmitoyltransferase that localizes to the ER and physically interacts with and greatly stimulates the activity of LCB1/LCB2 heterodimer ser palmitoyltransferase complex. Mutants have low pollen viability.	transmembrane protein, putative (DUF3317);(source:Araport11)
AT1G06890.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	UXT3 is a member of the NST-KT subfamily  of nucleotide/sugar transporters. It is localized to the golgi and functions as a UDP-Xyl transporter.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G06960.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Similar to U2B'. Functions in  cold stress induced alternative splicing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G07170.2	protein_coding	PHF5-like protein	Similar to human splicing factor 3b, 14 kda subunit, SF3b14b.	PHF5-like protein;(source:Araport11)
AT1G07200.2	protein_coding	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein	Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance.	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G07485.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G07615.1	protein_coding	GTP-binding protein Obg/CgtA		GTP-binding protein Obg/CgtA;(source:Araport11)
AT1G07660.2	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT1G07705.2	protein_coding	NOT2 / NOT3 / NOT5 family		NOT2 / NOT3 / NOT5 family;(source:Araport11)
AT1G07728.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G07725;(source:Araport11)
AT1G07728.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G07725;(source:Araport11)
AT1G07745.2	protein_coding	homolog of RAD51 D	Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.	DNA repair RAD51-like protein;(source:Araport11)
AT1G07747.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G07890.6	protein_coding	ascorbate peroxidase 1	Encodes a cytosolic ascorbate peroxidase APX1.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. The mRNA is cell-to-cell mobile.	ascorbate peroxidase 1;(source:Araport11)
AT1G07890.7	protein_coding	ascorbate peroxidase 1	Encodes a cytosolic ascorbate peroxidase APX1.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. The mRNA is cell-to-cell mobile.	ascorbate peroxidase 1;(source:Araport11)
AT1G07930.2	protein_coding	GTP binding Elongation factor Tu family protein		GTP binding Elongation factor Tu family protein;(source:Araport11)
AT1G08005.1	protein_coding			serine/threonine-protein phosphatase 6 regulatory subunit;(source:Araport11)
AT1G08010.2	protein_coding	GATA transcription factor 11	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 11;(source:Araport11)
AT1G08220.2	protein_coding			ATPase complex subunit;(source:Araport11)
AT1G08230.2	protein_coding	Transmembrane amino acid transporter family protein	Codes for a H+-driven, high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta, AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G08310.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G08350.2	protein_coding	Endomembrane protein 70 protein family		Endomembrane protein 70 protein family;(source:Araport11)
AT1G08570.2	protein_coding	atypical CYS  HIS rich thioredoxin 4	Encodes a member of the thioredoxin family protein.  Located in the chloroplast.  Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate   dehydrogenase. The mRNA is cell-to-cell mobile.	atypical CYS HIS rich thioredoxin 4;(source:Araport11)
AT1G08630.5	protein_coding	threonine aldolase 1	Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.	threonine aldolase 1;(source:Araport11)
AT1G08710.2	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G08830.2	protein_coding	copper/zinc superoxide dismutase 1	Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals.  Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress. Activation of CSD1 in the cytoplasm involves both a CCS-dependent and -independent pathway.	copper/zinc superoxide dismutase 1;(source:Araport11)
AT1G08900.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G08900.3	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G09625.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G09840.5	protein_coding	shaggy-like protein kinase 41		shaggy-like protein kinase 41;(source:Araport11)
AT1G09840.6	protein_coding	shaggy-like protein kinase 41		shaggy-like protein kinase 41;(source:Araport11)
AT1G09932.2	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT1G09980.2	protein_coding	Putative serine esterase  family protein		Putative serine esterase family protein;(source:Araport11)
AT1G10522.2	protein_coding		Encodes PRIN2 (plastid redox insensitive 2). PRIN2 mutants are impaired in PEP (plastid-encoded RNA polymerase) activity and high light-dependent plastid redox signalling to the nucleus.	Serine/Threonine-kinase;(source:Araport11)
AT1G10588.1	protein_coding	Gibberellin-regulated family protein	Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein	Gibberellin-regulated family protein;(source:Araport11)
AT1G10588.2	protein_coding	Gibberellin-regulated family protein	Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein	Gibberellin-regulated family protein;(source:Araport11)
AT1G10600.3	protein_coding	associated molecule with the SH3 domain of STAM 2		associated molecule with the SH3 domain of STAM 2;(source:Araport11)
AT1G10657.1	protein_coding	Plant protein 1589 of unknown function		transmembrane protein;(source:Araport11)
AT1G10657.2	protein_coding	Plant protein 1589 of unknown function		transmembrane protein;(source:Araport11)
AT1G10705.1	pseudogene		Encodes a Maternally expressed gene (MEG) family protein [pseudogene]	pseudogene of EMBRYO SURROUNDING FACTOR-like protein;(source:Araport11)
AT1G10710.2	protein_coding	poor homologous synapsis 1	Computational predictions suggested the presence of a small cysteine-rich protein downstream of this gene model (Silverstein 2007), but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene which is depicted in the At1g10710.1 gene model.	poor homologous synapsis 1;(source:Araport11)
AT1G10717.1	protein_coding		Encodes a Maternally expressed gene (MEG) family protein	EMBRYO SURROUNDING FACTOR-like protein;(source:Araport11)
AT1G10745.1	protein_coding	Maternally expressed gene (MEG) family protein	Encodes a Maternally expressed gene (MEG) family protein	maternally expressed family protein;(source:Araport11)
AT1G10747.1	protein_coding	Maternally expressed gene (MEG) family protein	Encodes a Maternally expressed gene (MEG) family protein	maternally expressed family protein;(source:Araport11)
AT1G10865.1	protein_coding			cytochrome C oxidase assembly factor;(source:Araport11)
AT1G11185.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT1G11450.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G11480.2	protein_coding	eukaryotic translation initiation factor-related		eukaryotic translation initiation factor-like protein;(source:Araport11)
AT1G11572.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G11592.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G11592.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G11735.1	miRNA_primary_transcript	MIR171B; miRNA	Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGAGCCGUGCCAAUAUCACG  Expression of this miRNA oscillates during the diurnal cycle. Pri-mRNA coordinates for MIR171b (converted to TAIR10 based on PMID19304749): Chr1: 3961705-3960931 (reverse), length: 775 bp; exon coordinates: exon 1: 3961705 to 3961324, exon 2: 3961237 to 3960931; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR171b precursor;(source:Araport11)
AT1G11755.1	protein_coding	Undecaprenyl pyrophosphate synthetase family protein	Encodes a cis-prenyltransferase, involved in dolichol biosynthesis. Wilted leaves in mutants due to cell membrane lesions. Mutants have increased drought tolerance, but hypersensitve to dark stress.	Undecaprenyl pyrophosphate synthetase family protein;(source:Araport11)
AT1G11785.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G11850.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G11850.4	protein_coding			transmembrane protein;(source:Araport11)
AT1G12140.2	protein_coding	flavin-monooxygenase glucosinolate S-oxygenase 5	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	flavin-monooxygenase glucosinolate S-oxygenase 5;(source:Araport11)
AT1G12250.2	protein_coding	Pentapeptide repeat-containing protein		Pentapeptide repeat-containing protein;(source:Araport11)
AT1G12650.3	protein_coding			rRNA biogenesis RRP36-like protein;(source:Araport11)
AT1G12650.4	protein_coding			rRNA biogenesis RRP36-like protein;(source:Araport11)
AT1G12663.1	protein_coding		Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	thionin-like protein;(source:Araport11)
AT1G12665.1	protein_coding		Thionin-like gene involved in resistance against the beet cyst nematode (Heterodera schachtii).	thionin-like protein;(source:Araport11)
AT1G12667.1	pseudogene		Encodes a Plant thionin family protein	pseudogene of thionin-like protein;(source:Araport11)
AT1G12669.1	pseudogene		Encodes a Plant thionin family protein [pseudogene]	pseudogene of thionin-like protein;(source:Araport11)
AT1G12672.1	protein_coding			thionin-like protein;(source:Araport11)
AT1G12750.2	protein_coding	RHOMBOID-like protein 6		RHOMBOID-like protein 6;(source:Araport11)
AT1G12900.2	protein_coding	glyceraldehyde 3-phosphate dehydrogenase A subunit 2		glyceraldehyde 3-phosphate dehydrogenase A subunit 2;(source:Araport11)
AT1G13440.2	protein_coding	glyceraldehyde-3-phosphate dehydrogenase C2	The expression level of GAPC-2 is upregulated in Arabidopsis seedlings exposed to cadmium.	glyceraldehyde-3-phosphate dehydrogenase C2;(source:Araport11)
AT1G13448.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G13450;(source:Araport11)
AT1G14100.1	protein_coding	fucosyltransferase 8	member of Glycosyltransferase Family- 37. FUT8 was previously associated to AT1G14110	fucosyltransferase 8;(source:Araport11)
AT1G14270.3	protein_coding	CAAX amino terminal protease family protein		CAAX amino terminal protease family protein;(source:Araport11)
AT1G14320.2	protein_coding	Ribosomal protein L16p/L10e family protein	Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.	Ribosomal protein L16p/L10e family protein;(source:Araport11)
AT1G14350.2	protein_coding	Duplicated homeodomain-like superfamily protein	Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells.  This phenotype is enhanced in double mutants with MYB88. Its transcript levels change after inducing MUTE expression in a mute background. Also regulates female reproductive development.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT1G14518.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G14570.3	protein_coding	UBX domain-containing protein	Encodes a nuclear UBX-containing protein that can bridge ubiquitin to AtCDC48A.	UBX domain-containing protein;(source:Araport11)
AT1G14570.4	protein_coding	UBX domain-containing protein	Encodes a nuclear UBX-containing protein that can bridge ubiquitin to AtCDC48A.	UBX domain-containing protein;(source:Araport11)
AT1G14690.2	protein_coding	microtubule-associated protein 65-7		microtubule-associated protein 65-7;(source:Araport11)
AT1G14700.2	protein_coding	purple acid phosphatase 3		purple acid phosphatase 3;(source:Araport11)
AT1G14750.2	protein_coding	Cyclin family protein	Encodes a meiotic cyclin-like protein, distinct from all other known Arabidopsis cyclins.  It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome.	Cyclin family protein;(source:Araport11)
AT1G15110.2	protein_coding	phosphatidyl serine synthase family protein	PSS1 encodes a base-exchange-type Phosphatidylserine (PS) synthase. Mutant analysis revealed its role in pollen maturation.	phosphatidyl serine synthase family protein;(source:Araport11)
AT1G15175.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G15170;(source:Araport11)
AT1G15400.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G15405.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G15690.2	protein_coding	Inorganic H pyrophosphatase family protein	Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1. The mRNA is cell-to-cell mobile.	Inorganic H pyrophosphatase family protein;(source:Araport11)
AT1G15885.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G15950.2	protein_coding	cinnamoyl coa reductase 1	Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis. The mRNA is cell-to-cell mobile.	cinnamoyl coa reductase 1;(source:Araport11)
AT1G16010.2	protein_coding	magnesium transporter 2	Transmembrane magnesium transporter. One of nine family members.	magnesium transporter 2;(source:Araport11)
AT1G16240.3	protein_coding	syntaxin of plants 51	Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.	syntaxin of plants 51;(source:Araport11)
AT1G16340.3	protein_coding	Aldolase superfamily protein	Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).	Aldolase superfamily protein;(source:Araport11)
AT1G16770.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G16905.1	protein_coding	Curculin-like (mannose-binding) lectin family protein		Curculin-like (mannose-binding) lectin family protein;(source:Araport11)
AT1G17130.2	protein_coding	Family of unknown function (DUF572) 	DUF572 domain protein involved in alternative splicing.	coiled-coil protein (DUF572);(source:Araport11)
AT1G17160.2	protein_coding	pfkB-like carbohydrate kinase family protein	RBSK is a plastid localized ribokinase involved in nucleoside metabolism. It is the only member of this gene family in Arabidopsis.	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT1G17235.1	protein_coding	ROTUNDIFOLIA like 11	This gene is predicted to encode a small protein with a DVL domain found in the DVL / RTFL protein family. Over-expression analyses using truncated versions of a related family member, ROT4, suggest that the DVL / RTF domain is involved in regulating cell proliferation.	ROTUNDIFOLIA like 11;(source:Araport11)
AT1G17277.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G78355.1);(source:TAIR10)
AT1G17280.2	protein_coding	ubiquitin-conjugating enzyme 34	Group XIV ubiquitin-conjugating enzyme that functions negative regulation of drought stress.	ubiquitin-conjugating enzyme 34;(source:Araport11)
AT1G17470.2	protein_coding	developmentally regulated G-protein 1	Encodes a member of the DRG (developmentally regulated G-protein) family expressed throughout the plant, with highest expression in actively growing tissues. Has GTPase activity.	developmentally regulated G-protein 1;(source:Araport11)
AT1G17710.2	protein_coding	Pyridoxal phosphate phosphatase-related protein	Encodes a phosphoethanolamine/phosphocholine phosphatase. It is likely to be involved in the liberation of inorganic phosphate from intracellular sources. Expression is upregulated in the shoot of cax1/cax3 mutant.	Pyridoxal phosphate phosphatase-related protein;(source:Araport11)
AT1G18030.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT1G18415.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G18420;(source:Araport11)
AT1G18620.2	protein_coding		Member of a small gene family in Arabidopsis. Quadruple mutants in this family display defects in cell elongation.	LONGIFOLIA protein;(source:Araport11)
AT1G18730.2	protein_coding	NDH dependent flow 6	likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. The mRNA is cell-to-cell mobile.	NDH dependent flow 6;(source:Araport11)
AT1G18735.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G18730;(source:Araport11)
AT1G18835.1	protein_coding	mini zinc finger	Encodes a small zinc &#64257;nger protein whose overexpression induces ectopic meristem formation on leaf margins.	mini zinc finger;(source:Araport11)
AT1G19115.1	protein_coding		Member of the IGT gene family.	hypothetical protein;(source:Araport11)
AT1G19330.2	protein_coding		Evening-expressed key component of Sin3-HDAC complex, which bind directly to the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) and PSEUDO-RESPONSE REGULATOR 9 (PRR9) promoters and catalyze histone 3 (H3) deacetylation at the cognate regions to repress expression, allowing the declining phase of their expression at dusk.	histone deacetylase complex subunit;(source:Araport11)
AT1G19350.6	protein_coding	Brassinosteroid signalling positive regulator (BZR1) family protein	Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes. Works with BRAVO to regulate QC division in the root.	Brassinosteroid signaling positive regulator (BZR1) family protein;(source:Araport11)
AT1G19371.1	miRNA_primary_transcript	MIR169H; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG	microRNA ath-MIR169h precursor;(source:Araport11)
AT1G19480.2	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT1G20020.2	protein_coding	ferredoxin-NADP(+)-oxidoreductase 2	Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase.  It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma The mRNA is cell-to-cell mobile.	ferredoxin-NADP[+]-oxidoreductase 2;(source:Araport11)
AT1G20020.3	protein_coding	ferredoxin-NADP(+)-oxidoreductase 2	Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase.  It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma The mRNA is cell-to-cell mobile.	ferredoxin-NADP[+]-oxidoreductase 2;(source:Araport11)
AT1G20065.1	protein_coding			DNA-directed RNA polymerase I subunit RPA12-like protein;(source:Araport11)
AT1G20065.2	protein_coding			DNA-directed RNA polymerase I subunit RPA12-like protein;(source:Araport11)
AT1G20180.2	protein_coding	Protein of unknown function (DUF677)		transmembrane protein (DUF677);(source:Araport11)
AT1G20375.1	miRNA_primary_transcript	MIR394A; miRNA	Encodes a microRNA that targets one member of the F-box family. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGCAUUCUGUCCACCUCC. It targets F-box protein AT1g27340.  It is involved in the regulation of leaf morphology.	microRNA ath-MIR394a precursor;(source:Araport11)
AT1G20515.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G20520;(source:Araport11)
AT1G20560.2	protein_coding	acyl activating enzyme 1		acyl activating enzyme 1;(source:Araport11)
AT1G20693.3	protein_coding	high mobility group B2	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. The mRNA is cell-to-cell mobile.	high mobility group B2;(source:Araport11)
AT1G20696.3	protein_coding	high mobility group B3	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. The mRNA is cell-to-cell mobile.	high mobility group B3;(source:Araport11)
AT1G20920.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G21528.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G21530.2	protein_coding	AMP-dependent synthetase and ligase family protein		AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G21780.2	protein_coding	BTB/POZ domain-containing protein	BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.	BTB/POZ domain-containing protein;(source:Araport11)
AT1G21835.1	protein_coding	Plant thionin family protein	Thionin-like gene involved in resistance against the beet cyst nematode (Heterodera schachtii).	Plant thionin family protein;(source:Araport11)
AT1G21864.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G21866.1	protein_coding	Plant thionin family protein	Thionin-like gene.	Plant thionin family protein;(source:Araport11)
AT1G21925.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G21928.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G21973.1	pseudogene		Encodes a Plant thionin family protein [pseudogene]	pseudogene of Plant thionin family protein;(source:Araport11)
AT1G22700.3	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G22750.4	protein_coding			transmembrane protein;(source:Araport11)
AT1G22830.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G22885.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G23080.3	protein_coding	Auxin efflux carrier family protein	Encodes a novel component of auxin efflux that is located  apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo.  It is also involved in pattern specification during root development.  In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific  to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing  cellular auxin efflux.	Auxin efflux carrier family protein;(source:Araport11)
AT1G23145.1	protein_coding	RALF-like 2	Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	RALF-like 2;(source:Araport11)
AT1G23147.1	protein_coding	RALF-like 3	Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	RALF-like 3;(source:Araport11)
AT1G23570.2	protein_coding	Domain of unknown function (DUF220)		hypothetical protein (DUF220);(source:Araport11)
AT1G23590.2	protein_coding	Domain of unknown function DUF220		OBP32pep protein, putative (Domain of unknown function DUF220);(source:Araport11)
AT1G23600.2	protein_coding	Domain of unknown function DUF220		OBP32pep protein, putative (Domain of unknown function DUF220);(source:Araport11)
AT1G23690.2	protein_coding	Domain of unknown function DUF220		hypothetical protein (Domain of unknown function DUF220);(source:Araport11)
AT1G23950.5	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT1G24030.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G24147.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G24350.2	protein_coding	Acid phosphatase/vanadium-dependent haloperoxidase-related protein		Acid phosphatase/vanadium-dependent haloperoxidase-related protein;(source:Araport11)
AT1G24577.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G25098.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G25097;(source:Araport11)
AT1G25098.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G25097;(source:Araport11)
AT1G25540.2	protein_coding	phytochrome and flowering time regulatory protein (PFT1)	Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions.  PFT1 promotes flowering in CO dependent and independent pathways and integrates several environmental stimuli, such as light quality and JA-dependent defenses.  Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions.  Also shown to be a Mediator subunit regulating jasmonate-dependent defense.	phytochrome and flowering time regulatory protein (PFT1);(source:Araport11)
AT1G26208.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G26210;(source:Araport11)
AT1G26208.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G26210;(source:Araport11)
AT1G26218.1	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT1G26220. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT1G26220;(source:Araport11)
AT1G26558.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G26558.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G26630.2	protein_coding	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. The mRNA is cell-to-cell mobile.	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein;(source:Araport11)
AT1G26762.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G26770.2	protein_coding	expansin A10	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A10;(source:Araport11)
AT1G26880.2	protein_coding	Ribosomal protein L34e superfamily protein		Ribosomal protein L34e superfamily protein;(source:Araport11)
AT1G26973.1	miRNA_primary_transcript	MIR395A; miRNA	Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGAACUC. Predicted targets are ATP sulfurylases.	microRNA ath-MIR395a precursor;(source:Araport11)
AT1G26975.1	miRNA_primary_transcript	MIR395B; miRNA	Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGGACUC. Predicted targets are ATP sulfurylases.	microRNA ath-MIR395b precursor;(source:Araport11)
AT1G26985.1	miRNA_primary_transcript	MIR395C; miRNA	Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGGACUC. Predicted targets are ATP sulfurylases.	microRNA ath-MIR395c precursor;(source:Araport11)
AT1G27135.1	protein_coding	Maternally expressed gene (MEG) family protein	Encodes a Maternally expressed gene (MEG) family protein	maternally expressed family protein;(source:Araport11)
AT1G27290.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G27360.3	protein_coding	squamosa promoter-like 11	In conjunction with SPL10 and SPL2, SPL11 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.	squamosa promoter-like 11;(source:Araport11)
AT1G27360.4	protein_coding	squamosa promoter-like 11	In conjunction with SPL10 and SPL2, SPL11 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.	squamosa promoter-like 11;(source:Araport11)
AT1G27370.4	protein_coding	squamosa promoter binding protein-like 10	In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.  SPL10 also controls lamina shape during vegetative development.	squamosa promoter binding protein-like 10;(source:Araport11)
AT1G27385.2	protein_coding			phosphoribosylformylglycinamidine synthase;(source:Araport11)
AT1G27540.2	protein_coding	Protein of unknown function (DUF295)		F-box protein (DUF295);(source:Araport11)
AT1G27565.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G27650.2	protein_coding	U2 snRNP auxiliary factor small subunit, putative	U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35.    U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.	U2 snRNP auxiliary factor small subunit;(source:Araport11)
AT1G27710.2	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT1G27752.1	protein_coding	Ubiquitin system component Cue protein		Ubiquitin system component Cue protein;(source:Araport11)
AT1G27970.2	protein_coding	nuclear transport factor 2B	Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport. The mRNA is cell-to-cell mobile.	nuclear transport factor 2B;(source:Araport11)
AT1G28090.3	protein_coding	Polynucleotide adenylyltransferase family protein		Polynucleotide adenylyltransferase family protein;(source:Araport11)
AT1G28100.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G28100.5	protein_coding			hypothetical protein;(source:Araport11)
AT1G28290.2	protein_coding	arabinogalactan protein 31	Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development.	arabinogalactan protein 31;(source:Araport11)
AT1G28305.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G28520.2	protein_coding	vascular plant one zinc finger protein	VOZ transcription factor which acts as positive regulator of several salt-responsive genes. Functionally redundant in salt stress with VOZ2.	vascular plant one zinc finger protein;(source:Araport11)
AT1G28630.2	protein_coding			transcriptional regulator EFH1-like protein;(source:Araport11)
AT1G28630.3	protein_coding			transcriptional regulator EFH1-like protein;(source:Araport11)
AT1G28630.4	protein_coding			transcriptional regulator EFH1-like protein;(source:Araport11)
AT1G28685.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G28680;(source:Araport11)
AT1G28815.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G29071.1	small_nucleolar_rna	SNOR105 (SMALL NUCLEOLAR RNA 105); snoRNA	predicted to encode a C/D box type of snoRNA, also known as Ath-282 (GB:AJ505633). But, the submitted sequence of 106 nucleotides is only part of the 162 nucleotide sequence predicted by Northern blotting. It is assumed that a 5' portion of the gene is missing and its 5' end has not been conclusively mapped. Sequence analysis of this snoRNA suggests that it may not function like other C/D box family members that modify rRNAs or snRNAs. Its true biological target remains unknown. The promoter of this snoRNA has hallmarks of the snRNA promoters targeted by RNA polymerase II,  indicating that it might also have a TMG (2,2,7 trimethyguanosine) cap. SnoRNA105 may also play a novel role in ribosome biogenesis (Marker 2002). Northern blotting reveals that snoRNA105 expression levels are higher in seedlings than in adult plants.	SNOR105 (SMALL NUCLEOLAR RNA 105),snoRNA;(source:Araport11)
AT1G29265.1	miRNA_primary_transcript	MIR399A; miRNA	Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content.  miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCAAAGGAGAUUUGCCCUG	microRNA ath-MIR399a precursor;(source:Araport11)
AT1G29357.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G29355;(source:Araport11)
AT1G29357.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G29355;(source:Araport11)
AT1G29418.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G29630.2	protein_coding	5'-3' exonuclease family protein		5-3 exonuclease family protein;(source:Araport11)
AT1G29785.1	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT1G29780. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT1G29780;(source:Araport11)
AT1G29785.2	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT1G29780. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT1G29780;(source:Araport11)
AT1G29962.1	protein_coding	AGAMOUS-like 64		AGAMOUS-like 64;(source:Araport11)
AT1G29970.2	protein_coding	60S ribosomal protein L18A-1		60S ribosomal protein L18A-1;(source:Araport11)
AT1G30230.2	protein_coding	Glutathione S-transferase, C-terminal-like;Translation elongation  factor EF1B/ribosomal protein S6	Encodes a guanine nucleotide exchange factor that plays an important role in translation elongation. It is localized in the plasma membrane and cytosol.  Mutants display ectopic lignin deposition as well as cell expansion defects	translation elongation factor EF1B/ribosomal protein S6 family protein;(source:Araport11)
AT1G30240.2	protein_coding			proline-, glutamic acid/leucine-rich protein;(source:Araport11)
AT1G30282.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G30280;(source:Araport11)
AT1G30460.2	protein_coding	cleavage and polyadenylation specificity factor 30	Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding  protein capable of  interacting with itself and with calmodulin. Its RNA-binding  activity is inhibited by calmodulin in a calcium-dependent fashion.	cleavage and polyadenylation specificity factor 30;(source:Araport11)
AT1G30475.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G30475.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G30620.3	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G30835.2	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family The mRNA is cell-to-cell mobile.	transposable_element_gene;(source:Araport11)
AT1G30890.2	protein_coding	Integral membrane HRF1 family protein		Integral membrane HRF1 family protein;(source:Araport11)
AT1G30970.2	protein_coding	zinc finger (C2H2 type) family protein	Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis.  suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants.  suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor.  SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus.	zinc finger (C2H2 type) family protein;(source:Araport11)
AT1G30972.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G30974.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G31170.2	protein_coding	sulfiredoxin	encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress	sulfiredoxin;(source:Araport11)
AT1G31170.3	protein_coding	sulfiredoxin	encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress	sulfiredoxin;(source:Araport11)
AT1G31173.1	miRNA_primary_transcript	MIR167D; miRNA	Encodes a microRNA that targets ARF family members ARF6 and ARF8.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAAGCUGCCAGCAUGAUCUGG	microRNA ath-MIR167d precursor;(source:Araport11)
AT1G31258.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G31358.1	miRNA_primary_transcript	MIR404; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:ATTAACGCTGGCGGTTGCGGCAGC	microRNA ath-MIR404 precursor;(source:Araport11)
AT1G31360.2	protein_coding	RECQ helicase L2	Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.	RECQ helicase L2;(source:Araport11)
AT1G31500.4	protein_coding	DNAse I-like superfamily protein	HESP identified based on similarity to nocturnins and presence circadian regulatory elements in the promoter. It functions as a Mg(II) dependent poly(A) exoribonuclease.It is under circadian regulation and expressed at night. Knockdowns affect the regulation of circadian genes CCA1 and TOC1.	DNAse I-like superfamily protein;(source:Araport11)
AT1G32070.3	protein_coding	nuclear shuttle interacting	Encodes a  acetyltransferase (NSI) that is localized in the nucleus and chloroplast. It interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. In the chloroplast NSI functions in the dynamic reorganization  thylakoid membrane complexes.  NSI is highly transcribed in phloem and in xylem parenchyma cells, and in  the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is  turned off as tissues mature.Mutants have reduced melatonin and anthocyanin levels and  do not accumulate the PSI-LHCII state transition complex.	nuclear shuttle interacting;(source:Araport11)
AT1G32190.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G32410.3	protein_coding	Vacuolar protein sorting 55 (VPS55) family protein		Vacuolar protein sorting 55 (VPS55) family protein;(source:Araport11)
AT1G32410.4	protein_coding	Vacuolar protein sorting 55 (VPS55) family protein		Vacuolar protein sorting 55 (VPS55) family protein;(source:Araport11)
AT1G32410.5	protein_coding	Vacuolar protein sorting 55 (VPS55) family protein		Vacuolar protein sorting 55 (VPS55) family protein;(source:Araport11)
AT1G32582.1	miRNA_primary_transcript	MIR400; miRNA	Encodes a microRNA of unknown function that is predicted to target PPR family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAUGAGAGUAUUAUAAGUCAC	microRNA ath-MIR400 precursor;(source:Araport11)
AT1G32810.2	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G33415.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G33420 and AT1G33430;(source:Araport11)
AT1G33415.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G33420 and AT1G33430;(source:Araport11)
AT1G33615.1	other_rna	other RNA		None;(source:Araport11)
AT1G33970.4	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	IAN9 is a member of a small family of proteins. It's expression is repressed upon pathogen infection and loss of function mutants show increased resistance to bacterial pathogens.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G34180.2	protein_coding	NAC domain containing protein 16		NAC domain containing protein 16;(source:Araport11)
AT1G34418.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT1G34760.2	protein_coding	general regulatory factor 11	Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light.	general regulatory factor 11;(source:Araport11)
AT1G34792.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G34795.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G34800.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G34805.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G34810.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G34815.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G34820.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G34825.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G34830.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G34840.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G34844.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G34842;(source:Araport11)
AT1G34850.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G34860.1	protein_coding	Plant thionin family protein	Thionin-like gene involved in resistance against the beet cyst nematode (Heterodera schachtii).	Plant thionin family protein;(source:Araport11)
AT1G34930.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G35035.1	protein_coding	Plant thionin family protein	Thionin-like gene involved in resistance against the beet cyst nematode (Heterodera schachtii).	Plant thionin family protein;(source:Araport11)
AT1G35112.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family	transposable_element_gene;(source:Araport11)
AT1G35190.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G35255.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G35467.1	protein_coding	RALF-like 5	Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	RALF-like 5;(source:Araport11)
AT1G36078.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G36622.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G37140.2	protein_coding	MEI2 C-terminal RRM only like 1	Amember of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only. MCT1 expression is increased in the presence of ABA and RNAi suppression showed increased germination rates in the presence of ABA.	MEI2 C-terminal RRM only like 1;(source:Araport11)
AT1G43170.4	protein_coding	ribosomal protein 1	Encodes a cytoplasmic ribosomal protein. The mRNA is cell-to-cell mobile.	ribosomal protein 1;(source:Araport11)
AT1G43190.2	protein_coding	polypyrimidine tract-binding protein 3		polypyrimidine tract-binding protein 3;(source:Araport11)
AT1G43190.3	protein_coding	polypyrimidine tract-binding protein 3		polypyrimidine tract-binding protein 3;(source:Araport11)
AT1G43620.3	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a UDP-glucose:sterol-glucosyltransferase. ugt80b1 mutant plants have reduced steryl glycoside and acyl steryl glycoside levels, reduced seed size, and a transparent testa phenotype. The mutant seeds also have reduced levels of suberization and lipid polyester monomers. ugt80a2/b1 double mutants have normal levels of celluose and normal cold stress tolerance.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G43765.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G43890.2	protein_coding	RAB GTPASE HOMOLOG B18	ras-related small GTPase	RAB GTPASE HOMOLOG B18;(source:Araport11)
AT1G44170.3	protein_coding	aldehyde dehydrogenase 3H1	Encodes an aldehyde dehydrogenase induced by ABA and dehydration that can oxidize saturated aliphatic aldehydes. It is also able to oxidize beta-unsaturated aldehydes, but not aromatic aldehydes. Activity of ALDH3H1 is NAD +-dependent.	aldehyde dehydrogenase 3H1;(source:Araport11)
AT1G44191.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT1G44224.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT1G44935.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family	transposable_element_gene;(source:Araport11)
AT1G45160.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G45170.2	protein_coding			outer envelope pore 24B-like protein;(source:Araport11)
AT1G45211.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT1G45215.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT1G45221.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a ECA1 gametogenesis related family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G45223.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT1G45225.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT1G45227.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT1G47278.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G47278.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G47497.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G47570.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G48210.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G48315.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G48320;(source:Araport11)
AT1G48745.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G48900.2	protein_coding	Signal recognition particle, SRP54 subunit protein		Signal recognition particle, SRP54 subunit protein;(source:Araport11)
AT1G49050.2	protein_coding	Eukaryotic aspartyl protease family protein	Encodes a member of the aspartyl protease family. Interacts with BAGP1 and BAG6 and appears to be required for cleavage of BAG6 as BAG6 is not cleaved in APCB1 mutant backgrounds.	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G49952.1	other_rna	other RNA		None;(source:Araport11)
AT1G50240.2	protein_coding	Protein kinase family protein with ARM repeat domain	The FUSED (FU) gene belongs to Ser/Thr protein kinase family and has a key role in the hedgehog signaling pathway known to control cell proliferation and patterning in fruit flies and humans . Arabidopsis thaliana genome has a single Fu gene that is involved in male meiosis cytokinesis. Cytokinesis-defective mutants, named two-in-one (tio), result from mutations in Arabidopsis Fu. Phenotypic analysis of tio mutants reveals an essential role for TIO in conventional modes of cytokinesis in plant meristems and during male gametogenesis. TIO is tightly localized to the midline of the nascent phragmoplast and remains associated with the expanding phragmoplast ring. This gene was previously annotated as two gene models, AT1G50230.1 and AT1G50240.1, however the experimental evidence exists (Oh et al, Current Biology, 2005) showing that these two models are in fact single gene, named FUSED.	kinase family with ARM repeat domain-containing protein;(source:Araport11)
AT1G50430.2	protein_coding	Ergosterol biosynthesis ERG4/ERG24 family	Mutants are defective in Brassinosteroid biosynthesis (delta7-sterol-C7 reduction step) and have a dwarf phenotype.	Ergosterol biosynthesis ERG4/ERG24 family;(source:Araport11)
AT1G50735.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family	transposable_element_gene;(source:Araport11)
AT1G51200.2	protein_coding	A20/AN1-like zinc finger family protein		A20/AN1-like zinc finger family protein;(source:Araport11)
AT1G51270.2	protein_coding	structural molecules;transmembrane receptors;structural molecules		vesicle-associated protein 1-4;(source:Araport11)
AT1G51538.1	protein_coding	Aminotransferase-like, plant mobile domain family protein		Aminotransferase-like, plant mobile domain family protein;(source:Araport11)
AT1G51645.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G51640;(source:Araport11)
AT1G51680.3	protein_coding	4-coumarate:CoA ligase 1	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate.  The catalytic efficiency was in the following (descending) order:  p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.	4-coumarate:CoA ligase 1;(source:Araport11)
AT1G51710.2	protein_coding	ubiquitin-specific protease 6	Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin.	ubiquitin-specific protease 6;(source:Araport11)
AT1G51770.2	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G51913.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G51980.2	protein_coding	Insulinase (Peptidase family M16) protein		Insulinase (Peptidase family M16) protein;(source:Araport11)
AT1G52150.3	protein_coding	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein	Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein;(source:Araport11)
AT1G52185.1	miRNA_primary_transcript	MIR406; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:TAGAATGCTATTGTAATCCAG	microRNA ath-MIR406 precursor;(source:Araport11)
AT1G52220.3	protein_coding			CURVATURE THYLAKOID protein;(source:Araport11)
AT1G52330.2	protein_coding	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family		Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
AT1G52347.1	other_rna	other RNA		None;(source:Araport11)
AT1G52618.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G52857.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G53163.1	protein_coding			membrane-associated kinase regulator;(source:Araport11)
AT1G53165.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G53233.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G53230;(source:Araport11)
AT1G53260.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G53282.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G53380.3	protein_coding	Plant protein of unknown function (DUF641)		hypothetical protein (DUF641);(source:Araport11)
AT1G53530.2	protein_coding	Peptidase S24/S26A/S26B/S26C family protein	Mitochondrial ATP-independent protease	Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT1G53635.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53683.1	miRNA_primary_transcript	MIR169D; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAGCCAAGGAUGACUUGCCG	microRNA ath-MIR169d precursor;(source:Araport11)
AT1G53687.1	miRNA_primary_transcript	MIR169E; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAGCCAAGGAUGACUUGCCG	microRNA ath-MIR169e precursor;(source:Araport11)
AT1G53708.1	protein_coding	ROTUNDIFOLIA like 9		ROTUNDIFOLIA like 9;(source:Araport11)
AT1G53710.2	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT1G53730.2	protein_coding	STRUBBELIG-receptor family 6		STRUBBELIG-receptor family 6;(source:Araport11)
AT1G53850.2	protein_coding	20S proteasome alpha subunit E1	Encodes alpha5 subunit of 20s proteosome involved in protein degradation and RNA degradation.	20S proteasome alpha subunit E1;(source:Araport11)
AT1G53910.3	protein_coding	related to AP2 12	Encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. Involved in oxygen sensing. It plays a key role in controlling root bending in response to hypoxia.	related to AP2 12;(source:Araport11)
AT1G54020.3	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G54355.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G54350;(source:Araport11)
AT1G54775.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G55140.2	protein_coding	Ribonuclease III family protein	Encodes one of two chloroplast Mini-RNase III-like enzymes in Arabidopsis.  Double mutants display imprecise maturation of 23S rRNA and other rRNAs.	Ribonuclease III family protein;(source:Araport11)
AT1G55205.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G55320.2	protein_coding	acyl-activating enzyme 18	Encodes a protein with similarity to acyl activating enzymes. AAE18 is localized to the peroxisome where it may be involved in metabolism of auxin precursors to active auxins.	acyl-activating enzyme 18;(source:Araport11)
AT1G55525.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G55840.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G55870.2	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA. Functions with AGS1 to regulate the poly(A) status of mitochondrial mRNA.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G56165.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G56160;(source:Araport11)
AT1G56170.2	protein_coding	nuclear factor Y, subunit C2	Encodes a protein with similarity to a subunit of  the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues. Involved in the regulation of response to nutrient levels.	nuclear factor Y, subunit C2;(source:Araport11)
AT1G56200.2	protein_coding	embryo defective 1303	Encodes a chloroplast localized protein that is essential for chloroplast development.	embryo defective 1303;(source:Araport11)
AT1G56220.4	protein_coding	Dormancy/auxin associated family protein		Dormancy/auxin associated family protein;(source:Araport11)
AT1G56242.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G56240;(source:Araport11)
AT1G56612.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G56610;(source:Araport11)
AT1G56612.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G56610;(source:Araport11)
AT1G56612.3	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G56610;(source:Araport11)
AT1G56700.2	protein_coding	Peptidase C15, pyroglutamyl peptidase I-like		Peptidase C15, pyroglutamyl peptidase I-like protein;(source:Araport11)
AT1G56700.3	protein_coding	Peptidase C15, pyroglutamyl peptidase I-like		Peptidase C15, pyroglutamyl peptidase I-like protein;(source:Araport11)
AT1G56720.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G57540.3	protein_coding			40S ribosomal protein;(source:Araport11)
AT1G57610.3	protein_coding	Protein of unknown function (DUF607)		calcium uniporter (DUF607);(source:Araport11)
AT1G57765.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G57775.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT1G57777.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT1G57943.2	protein_coding	purine permease 17	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 17;(source:Araport11)
AT1G58007.1	protein_coding			multidrug resistance protein;(source:Araport11)
AT1G58100.2	protein_coding	TCP family transcription factor 	Encodes TCP8, belongs to the TCP transcription factor family known to bind site II elements in promoter regions.	TCP family transcription factor;(source:Araport11)
AT1G58245.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G58248.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G58590.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G58590.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G58602.2	protein_coding	LRR and NB-ARC domains-containing disease resistance protein		LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT1G60025.1	miRNA_primary_transcript	MIR426; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:TTTTGGAAATTTGTCCTTACG	microRNA ath-MIR426 precursor;(source:Araport11)
AT1G60430.2	protein_coding	actin-related protein C3		actin-related protein C3;(source:Araport11)
AT1G60505.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G60510;(source:Araport11)
AT1G60505.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G60510;(source:Araport11)
AT1G60525.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G60530;(source:Araport11)
AT1G60525.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G60530;(source:Araport11)
AT1G60545.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G60540;(source:Araport11)
AT1G60625.1	protein_coding	RALF-like 6	Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	RALF-like 6;(source:Araport11)
AT1G60670.2	protein_coding	Protein of unknown function (DUF3755)		hypothetical protein (DUF3755);(source:Araport11)
AT1G60815.1	protein_coding	RALF-like 7	Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	RALF-like 7;(source:Araport11)
AT1G60835.1	pseudogene		Encodes a Rapid ALkalinization Factor (RALF) family protein [pseudogene]	pseudogene of RALF-like 7;(source:Araport11)
AT1G60913.1	protein_coding	Rapid alkalinization factor (RALF) family protein	Encodes a Rapid ALkalinization Factor (RALF) family protein	Rapid alkalinization factor (RALF) family protein;(source:Araport11)
AT1G60990.2	protein_coding	Glycine cleavage T-protein family	Encodes a chloroplast-localized COG0354 protein that requires folate for its function in Fe/S cluster biogenesis.	Glycine cleavage T-protein family;(source:Araport11)
AT1G60995.1	protein_coding			S3 self-incompatibility locus-linked pollen protein;(source:Araport11)
AT1G61150.4	protein_coding	LisH and RanBPM domains containing protein		LisH and RanBPM domains containing protein;(source:Araport11)
AT1G61150.5	protein_coding	LisH and RanBPM domains containing protein		LisH and RanBPM domains containing protein;(source:Araport11)
AT1G61150.6	protein_coding	LisH and RanBPM domains containing protein		LisH and RanBPM domains containing protein;(source:Araport11)
AT1G61150.7	protein_coding	LisH and RanBPM domains containing protein		LisH and RanBPM domains containing protein;(source:Araport11)
AT1G61240.3	protein_coding	Protein of unknown function (DUF707)		lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT1G61575.1	protein_coding			Serine/Threonine kinase;(source:Araport11)
AT1G61795.1	protein_coding	PAK-box/P21-Rho-binding family protein		PAK-box/P21-Rho-binding family protein;(source:Araport11)
AT1G62035.1	miRNA_primary_transcript	MIR171C; miRNA	Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGAGCCGUGCCAAUAUCACG. Pri-mRNA coordinates for MIR171c (converted to TAIR10 based on PMID19304749): Chr1: 22930427-22929567 (reverse), length: 861 bp; exon coordinates: exon 1: 22930427 to 22930342, exon 2: 22930233 to 22930047, exon 3: 22929839 to 22929567; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR171c precursor;(source:Araport11)
AT1G62262.1	protein_coding	SLAC1 homologue 4	Predicted to encode a protein with similarity to the SLAC1 protein involved in ion homeostasis in guard cells.	SLAC1 homologue 4;(source:Araport11)
AT1G62355.1	miRNA_primary_transcript	MIR413; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:ATAGTTTCTCTTGTTCTGCAC	microRNA ath-MIR413 precursor;(source:Araport11)
AT1G62421.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G62422.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G62850.2	protein_coding	Class I peptide chain release factor		Class I peptide chain release factor;(source:Araport11)
AT1G62850.3	protein_coding	Class I peptide chain release factor		Class I peptide chain release factor;(source:Araport11)
AT1G63005.1	miRNA_primary_transcript	MIR399B; miRNA	Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content.  miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CCUGCCAAAGGAGAGUUGCCC	microRNA ath-MIR399b precursor;(source:Araport11)
AT1G63010.3	protein_coding	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein	Encodes an SPX domain protein that transports Pi into the vacuole and is essential for phosphate homeostasis.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT1G63010.4	protein_coding	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein	Encodes an SPX domain protein that transports Pi into the vacuole and is essential for phosphate homeostasis.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT1G63030.2	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in the reduction of gibberellic acid biosynthesis. This gene is expressed in all tissues examined, but most abundantly expressed in rosette leaves and stems. Overexpression of DDF1, a putative paralog of this gene, also reduces gibberellic acid biosynthesis and makes the plants more tolerant to high-salinity levels.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G63220.2	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G63670.2	protein_coding	Protein of unknown function (DUF3741)		hypothetical protein (DUF3741);(source:Araport11)
AT1G63670.3	protein_coding	Protein of unknown function (DUF3741)		hypothetical protein (DUF3741);(source:Araport11)
AT1G63750.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G63750.3	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G64100.2	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G64585.1	protein_coding	ROTUNDIFOLIA like 22		ROTUNDIFOLIA like 22;(source:Araport11)
AT1G64650.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G64710.2	protein_coding	GroES-like zinc-binding dehydrogenase family protein		GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT1G65040.3	protein_coding	RING/U-box superfamily protein	Encodes one of the Arabidopsis homologs of the yeast/human Hrd1 protein: AT3G16090 (Hrd1A), AT1G65040 (Hrd1B). Involved in ERAD (Endoplasmic reticulum-associated degradation).	RING/U-box superfamily protein;(source:Araport11)
AT1G65440.2	protein_coding	global transcription factor group B1	Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. It encodes a putative WG/GW-repeat protein involved in the regulation of apical-basal polarity of embryo	global transcription factor group B1;(source:Araport11)
AT1G65483.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G65620.2	protein_coding	Lateral organ boundaries (LOB) domain family protein	required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation.   Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.	Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT1G65620.3	protein_coding	Lateral organ boundaries (LOB) domain family protein	required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation.   Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.	Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT1G66660.2	protein_coding	Protein with RING/U-box and TRAF-like domains		Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT1G67148.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G67265.1	protein_coding	ROTUNDIFOLIA like 21		ROTUNDIFOLIA like 21;(source:Araport11)
AT1G67280.2	protein_coding	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein	Encodes a Ni+ dependent glyoxylase.	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein;(source:Araport11)
AT1G67350.2	protein_coding			NADH-ubiquinone oxidoreductase;(source:Araport11)
AT1G67365.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G67370;(source:Araport11)
AT1G67480.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G67660.2	protein_coding	Restriction endonuclease, type II-like superfamily protein		Restriction endonuclease, type II-like superfamily protein;(source:Araport11)
AT1G67800.4	protein_coding	Copine (Calcium-dependent phospholipid-binding protein) family		Copine (Calcium-dependent phospholipid-binding protein) family;(source:Araport11)
AT1G67890.2	protein_coding	PAS domain-containing protein tyrosine kinase family protein	Encodes a protein with similarity to RAF MAP kinases. Based on loss of function phenotype, RAF11 appears to be involved in mediating ABA responses such as dormancy and environmental stress. Expressed in most plant tissues but excluded from root tips and young leaves.	PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT1G68080.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G68080.3	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G68130.2	protein_coding	indeterminate(ID)-domain 14	Encodes the shorter of two splice variants of a transcription factor, the variant that lacks a functional DNA binding domain and acts as a competitive inhibitor in regulating starch metabolism.  The two proteins form both homo- and heterodimers.  Heterodimers have reduced binding ability to the promoter of QQS, a gene that regulates starch accumulation.	indeterminate(ID)-domain 14;(source:Araport11)
AT1G68200.2	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G68568.1	antisense_rna	other RNA		Natural antisense transcript overlaps with AT1G68570;(source:Araport11)
AT1G68590.2	protein_coding	Ribosomal protein PSRP-3/Ycf65		Ribosomal protein PSRP-3/Ycf65;(source:Araport11)
AT1G68660.2	protein_coding	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein	ClpS1 is a member of the caseionolytic proteinase S family of N-recognins. It is involved in proteolysis in the chloroplast stroma. An arginine residue (Arg50) controls low-affinity substrate binding.	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein;(source:Araport11)
AT1G68825.1	protein_coding	ROTUNDIFOLIA like 15		ROTUNDIFOLIA like 15;(source:Araport11)
AT1G68862.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G68910.2	protein_coding	WPP domain-interacting protein 2	Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390, WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells.  Ran GTPase plays essential roles in multiple cellular processes, including nucleocytoplasmic transport, spindle formation, and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs).  WIT1 and WIT2 have been identified as a second family of CC-TMD proteins, structurally similar, yet clearly distinct from the WIP family, that is required for RanGAP nuclear envelop association in root tip cells.	WPP domain-interacting protein 2;(source:Araport11)
AT1G69580.2	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT1G69588.1	protein_coding	CLAVATA3/ESR-RELATED 45	Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini	CLAVATA3/ESR-RELATED 45;(source:Araport11)
AT1G69740.2	protein_coding	Aldolase superfamily protein	Encodes a putative 5-aminolevulinate dehydratase involved in chlorophyll biosynthesis.	Aldolase superfamily protein;(source:Araport11)
AT1G69792.1	miRNA_primary_transcript	MIR395D; miRNA	Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGAACUC. Predicted targets are ATP sulfurylases.	microRNA ath-MIR395d precursor;(source:Araport11)
AT1G69795.1	miRNA_primary_transcript	MIR395E; miRNA	Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGAACUC. Predicted targets are ATP sulfurylases.	microRNA ath-MIR395e precursor;(source:Araport11)
AT1G69797.1	miRNA_primary_transcript	MIR395F; miRNA	Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGGACUC. Predicted targets are ATP sulfurylases.	microRNA ath-MIR395f precursor;(source:Araport11)
AT1G69800.2	protein_coding	Cystathionine beta-synthase (CBS) protein		Cystathionine beta-synthase (CBS) protein;(source:Araport11)
AT1G69840.5	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT1G69840.6	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT1G70100.4	protein_coding			neurofilament heavy protein;(source:Araport11)
AT1G70830.3	protein_coding	MLP-like protein 28		MLP-like protein 28;(source:Araport11)
AT1G70830.4	protein_coding	MLP-like protein 28		MLP-like protein 28;(source:Araport11)
AT1G70895.2	protein_coding	CLAVATA3/ESR-RELATED 17	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 17;(source:Araport11)
AT1G71240.2	protein_coding	Plant protein of unknown function (DUF639)		chromosome-partitioning protein, putative (DUF639);(source:Araport11)
AT1G71760.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G72330.2	protein_coding	alanine aminotransferase 2	Encodes for alanine aminotransferase ALAAT2.	alanine aminotransferase 2;(source:Araport11)
AT1G72360.2	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G72560.2	protein_coding	ARM repeat superfamily protein	Encodes a karyopherin, specifically the Arabidopsis ortholog of LOS1/XPOT, a protein that mediates nuclear export of tRNAs in yeast and mammals.  PSD is capable of rescuing the tRNA export defect of los1 in S. cerevisiae. psd mutants display disrupted initiation of the shoot apical meristem and delay leaf initiation after germination; they also display delayed transition from vegetative to reproductive development.	ARM repeat superfamily protein;(source:Araport11)
AT1G72740.2	protein_coding	Homeodomain-like/winged-helix DNA-binding family protein	Single Myb Histone (SMH) gene family member. Contains terminal acidic SANT domain.	Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
AT1G72770.2	protein_coding	HYPERSENSITIVE TO ABA1	mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C; regulates the activation of the Snf1-related kinase OST1 by abscisic acid. The mRNA is cell-to-cell mobile.	HYPERSENSITIVE TO ABA1;(source:Araport11)
AT1G72855.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G72860;(source:Araport11)
AT1G72930.2	protein_coding	toll/interleukin-1 receptor-like	Toll/interleukin-1 receptor-like protein (TIR) mRNA,	toll/interleukin-1 receptor-like protein;(source:Araport11)
AT1G73170.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G73350.2	protein_coding			ankyrin repeat protein;(source:Araport11)
AT1G74088.1	protein_coding			galacturonosyltransferase;(source:Araport11)
AT1G74140.3	protein_coding	Rhomboid-related intramembrane serine protease family protein		Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT1G74140.4	protein_coding	Rhomboid-related intramembrane serine protease family protein		Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT1G74458.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G74560.3	protein_coding	NAP1-related protein 1	Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M  and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo. Plant mutated in both NRP1 and NRP2 genes show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. NRP genes act synergistically with NAP1 genes in promoting somatic homologous recombination.	NAP1-related protein 1;(source:Araport11)
AT1G75060.2	protein_coding		Evening-expressed key component of Sin3-HDAC complex, which bind directly to the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) and PSEUDO-RESPONSE REGULATOR 9 (PRR9) promoters and catalyze histone 3 (H3) deacetylation at the cognate regions to repress expression, allowing the declining phase of their expression at dusk.	histone deacetylase complex subunit;(source:Araport11)
AT1G75190.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G75250.2	protein_coding	RAD-like 6		RAD-like 6;(source:Araport11)
AT1G75295.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G75290 and AT1G75300;(source:Araport11)
AT1G75295.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G75290 and AT1G75300;(source:Araport11)
AT1G75295.3	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G75290 and AT1G75300;(source:Araport11)
AT1G75390.2	protein_coding	basic leucine-zipper 44		basic leucine-zipper 44;(source:Araport11)
AT1G75410.2	protein_coding	BEL1-like homeodomain 3	BEL1-like homeodomain 3 (BLH3)	BEL1-like homeodomain 3;(source:Araport11)
AT1G75560.2	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT1G75890.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G75920.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates. The mRNA is cell-to-cell mobile.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G75920.3	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates. The mRNA is cell-to-cell mobile.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G76065.1	protein_coding	LYR family of Fe/S cluster biogenesis protein		LYR family of Fe/S cluster biogenesis protein;(source:Araport11)
AT1G76135.1	miRNA_primary_transcript	MIR394B; miRNA	Encodes a microRNA that targets one member of the F-box family. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGCAUUCUGUCCACCUCC. It targets F-box protein AT1g27340.  It is involved in the regulation of leaf morphology.	microRNA ath-MIR394b precursor;(source:Araport11)
AT1G76390.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G76650.2	protein_coding	calmodulin-like 38		calmodulin-like 38;(source:Araport11)
AT1G76952.1	protein_coding	inflorescence deficient in abscission (IDA)-like 5	Similar to Inflorescence deficient in abscission (IDA). Involved in floral organ abscission.	inflorescence deficient in abscission (IDA)-like 5;(source:Araport11)
AT1G77235.1	miRNA_primary_transcript	MIR402; miRNA	Encodes an abiotic stress induced microRNA that targets DML3. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUCGAGGCCUAUUAAACCUCUG	microRNA ath-MIR402 precursor;(source:Araport11)
AT1G77300.2	protein_coding	histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific)	Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones.Required for ovule, embryo sac, anther and pollen development.	histone-lysine N-methyltransferase;(source:Araport11)
AT1G77682.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G78040.2	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT1G78265.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G78270;(source:Araport11)
AT1G78290.3	protein_coding	Protein kinase superfamily protein	encodes a member of SNF1-related protein kinase (SnRK2) family whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress and dehydration.	Protein kinase superfamily protein;(source:Araport11)
AT1G78510.2	protein_coding	solanesyl diphosphate synthase 1	Encodes one of the two paralogous solanesyl diphosphate synthases - SPS1 (At1g78510) and SPS2 (At1g17050) - that assemble the side-chain of plastoquinone-9 in plastids.	solanesyl diphosphate synthase 1;(source:Araport11)
AT1G78780.3	protein_coding	pathogenesis-related family protein		pathogenesis-related family protein;(source:Araport11)
AT1G78780.4	protein_coding	pathogenesis-related family protein		pathogenesis-related family protein;(source:Araport11)
AT1G78790.2	protein_coding		Encodes a protein with high similarity to mammalian MHF2 that acts in the same pathway as FANCM to restrain class II meiotic crossing over.	centromere protein X;(source:Araport11)
AT1G79050.2	protein_coding	recA DNA recombination family protein		recA DNA recombination family protein;(source:Araport11)
AT1G79075.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT1G79075.2	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT1G79210.2	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein		N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT1G79210.3	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein		N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT1G79230.2	protein_coding	mercaptopyruvate sulfurtransferase 1	encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification.	mercaptopyruvate sulfurtransferase 1;(source:Araport11)
AT1G79230.3	protein_coding	mercaptopyruvate sulfurtransferase 1	encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification.	mercaptopyruvate sulfurtransferase 1;(source:Araport11)
AT1G79700.2	protein_coding	Integrase-type DNA-binding superfamily protein	WRI4 encodes an AP2/ERF-type transcriptional activator that specifically controls cuticular wax biosynthesis in Arabidopsis stems. It also functions to activate transcription of genes involved fatty acid biosynthesis during seed and flower development as well as stem wax biosynthesis. Targets identified by ChIP-seq include: LACS1, KCR1, PAS2, ECR, and WSD1.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G80133.1	protein_coding			EPIDERMAL PATTERNING FACTOR-like protein;(source:Araport11)
AT1G80160.2	protein_coding	Lactoylglutathione lyase / glyoxalase I family protein	Vicinal oxygen chelate (VOC) superfamily member.	Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT1G80245.3	protein_coding	Spc97 / Spc98 family of spindle pole body (SBP) component		Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT1G80270.3	protein_coding	PENTATRICOPEPTIDE REPEAT 596		PENTATRICOPEPTIDE REPEAT 596;(source:Araport11)
AT1G80290.2	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	a member of the Glycosyltransferase Family 64 (according to CAZy Database)	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT1G80325.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G80320;(source:Araport11)
AT1G80325.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G80320;(source:Araport11)
AT1G80380.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G80420.3	protein_coding	BRCT domain-containing DNA repair protein	Encodes a component of plant break excision repair and functions at several stages during active DNA demethylation in Arabidopsis.	BRCT domain-containing DNA repair protein;(source:Araport11)
AT1G80555.1	protein_coding	Isocitrate/isopropylmalate dehydrogenase family protein		Isocitrate/isopropylmalate dehydrogenase family protein;(source:Araport11)
AT1G80640.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G80745.1	protein_coding	Transcription factor TFIIIC, tau55-related protein		Transcription factor TFIIIC, tau55-related protein;(source:Araport11)
AT1G80810.2	protein_coding	Tudor/PWWP/MBT superfamily protein	One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT2G01250.2	protein_coding	Ribosomal protein L30/L7 family protein	Cytosolic ribosomal 60S subunit protein.	Ribosomal protein L30/L7 family protein;(source:Araport11)
AT2G01350.3	protein_coding	quinolinate phoshoribosyltransferase	At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.	quinolinate phoshoribosyltransferase;(source:Araport11)
AT2G01350.4	protein_coding	quinolinate phoshoribosyltransferase	At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.	quinolinate phoshoribosyltransferase;(source:Araport11)
AT2G01630.2	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT2G01818.1	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT2G01940.3	protein_coding	C2H2-like zinc finger protein	Encodes a transcription factor that, together with IDD14 and IDD16, regulates auxin biosynthesis and transport and thus aerial organ morphogenesis and gravitropic responses. May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.	C2H2-like zinc finger protein;(source:Araport11)
AT2G02170.2	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT2G02370.2	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT2G02570.4	protein_coding	nucleic acid binding;RNA binding		nucleic acid binding/RNA binding protein;(source:Araport11)
AT2G03060.2	protein_coding	AGAMOUS-like 30	Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.	AGAMOUS-like 30;(source:Araport11)
AT2G03445.1	miRNA_primary_transcript	MIR398A; miRNA	Encodes a microRNA that targets both CSD and CytC oxidase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGUGUUCUCAGGUCACCCCUU. Down-regulated by biotic and abiotic stress.	microRNA ath-MIR398a precursor;(source:Araport11)
AT2G03530.2	protein_coding	ureide permease 2	Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.	ureide permease 2;(source:Araport11)
AT2G03667.1	protein_coding	Asparagine synthase family protein		Asparagine synthase family protein;(source:Araport11)
AT2G03972.1	pseudogene		pseudogene of heat shock protein	pseudogene of Chaperone protein htpG family protein;(source:Araport11)
AT2G03972.2	pseudogene		pseudogene of heat shock protein	pseudogene of Chaperone protein htpG family protein;(source:Araport11)
AT2G04031.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	prolamin-like protein (DUF784);(source:Araport11)
AT2G04039.3	protein_coding		NdhV is loosely associated with the NDH complex and is required for stabilizing NDH subcomplexes A and E.	DUF2996 family protein;(source:Araport11)
AT2G04690.2	protein_coding	Pyridoxamine 5'-phosphate oxidase family protein		Pyridoxamine 5-phosphate oxidase family protein;(source:Araport11)
AT2G04790.4	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G04845.2	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G05260.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G05510.4	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT2G05830.4	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein	Encodes a 5-methylthioribose-1-phosphate isomerase.	NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT2G05995.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G06050.3	protein_coding	oxophytodienoate-reductase 3	Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. Shows activity towards 2,4,6-trinitrotoluene.  CFA-Ile, CFA-Leu, CFA-Val, CFA-Met and CFA-Ala can restore the fertility of opr3 plants by inducing filament elongation and anther dehiscence.	oxophytodienoate-reductase 3;(source:Araport11)
AT2G09795.1	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT2G09800. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT2G09800;(source:Araport11)
AT2G09795.2	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT2G09800. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT2G09800;(source:Araport11)
AT2G09795.3	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT2G09800. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT2G09800;(source:Araport11)
AT2G10606.1	miRNA_primary_transcript	MIR396A; miRNA	Encodes a microRNA that targets several GRF family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUCCACAGCUUUCUUGAACUG. miR396 expression increased with leaf development, antagonizing with expression of GRFs. Transcript accumulates in the distal zone of young developing seeds, restricing the expression of GRF2 to the proximal part. miR396 attenuates cell  proliferation in developing leaves through the repression of GRF activity and a decrease in the expression of cell cycle genes.	microRNA ath-MIR396a precursor;(source:Araport11)
AT2G13295.1	protein_coding		Encodes a Protease inhibitor/seed storage/LTP family protein	protease inhibitor/seed storage/lipid transfer family protein;(source:Araport11)
AT2G13431.1	transposable_element_gene	other RNA		transposable_element_gene;(source:Araport11)
AT2G13665.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G13660;(source:Araport11)
AT2G13665.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G13660;(source:Araport11)
AT2G13960.2	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT2G14170.2	protein_coding	aldehyde dehydrogenase  6B2	Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase	aldehyde dehydrogenase 6B2;(source:Araport11)
AT2G14170.3	protein_coding	aldehyde dehydrogenase  6B2	Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase	aldehyde dehydrogenase 6B2;(source:Araport11)
AT2G14285.1	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT2G14378.1	protein_coding	Protein of unknown function (DUF1278)	Encodes a ECA1 gametogenesis related family protein	egg cell-secreted-like protein (DUF1278);(source:Araport11)
AT2G15000.3	protein_coding			caspase-6 protein;(source:Araport11)
AT2G15000.4	protein_coding			caspase-6 protein;(source:Araport11)
AT2G15000.5	protein_coding			caspase-6 protein;(source:Araport11)
AT2G15400.2	protein_coding	DNA-directed RNA polymerase family protein	Non-catalytic subunit of Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit.  A closely related paralog, At2g15430 can substitute for At2g15400 in the context of Pol V and encodes the equivalent subunit of Pol II and Pol IV.	DNA-directed RNA polymerase family protein;(source:Araport11)
AT2G15890.2	protein_coding	maternal effect embryo arrest 14	Encodes CBP1, a regulator of transcription initiation in central cell-mediated pollen tube guidance.	maternal effect embryo arrest 14;(source:Araport11)
AT2G16145.1	miRNA_primary_transcript	MIR416; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:GGTTCGTACGTACACTGTTCA	microRNA ath-MIR416 precursor;(source:Araport11)
AT2G16225.1	protein_coding	Maternally expressed gene (MEG) family protein	Encodes a Maternally expressed gene (MEG) family protein	EMBRYO SURROUNDING FACTOR-like protein;(source:Araport11)
AT2G16245.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G16250;(source:Araport11)
AT2G16505.1	protein_coding	Maternally expressed gene (MEG) family protein	Encodes a Maternally expressed gene (MEG) family protein	maternally expressed family protein;(source:Araport11)
AT2G16535.1	protein_coding	Maternally expressed gene (MEG) family protein	Encodes a Maternally expressed gene (MEG) family protein	maternally expressed family protein;(source:Araport11)
AT2G16592.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G16594.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G16600.2	protein_coding	rotamase CYP 3	Encodes cytosolic cyclophilin ROC3. The mRNA is cell-to-cell mobile.	rotamase CYP 3;(source:Araport11)
AT2G16710.2	protein_coding	Iron-sulphur cluster biosynthesis family protein		Iron-sulfur cluster biosynthesis family protein;(source:Araport11)
AT2G16900.2	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G16930.3	protein_coding	Ribosomal protein L27 family protein		Ribosomal protein L27 family protein;(source:Araport11)
AT2G16960.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT2G17280.2	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT2G17530.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G17550.2	protein_coding			RB1-inducible coiled-coil protein;(source:Araport11)
AT2G17560.3	protein_coding	high mobility group B4	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.	high mobility group B4;(source:Araport11)
AT2G17800.2	protein_coding	Arabidopsis RAC-like 1	A member of ROP GTPase family. Rac-like GTP-binding protein ARAC1/ATGP2. Encodes a geranylgeranylated GTP binding protein. Involved in the auxin-activated 26S proteasome-dependent Aux/IAA proteolysis pathway.	RAC-like 1;(source:Araport11)
AT2G17970.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G18042.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis related family protein;(source:Araport11)
AT2G18328.1	protein_coding	RAD-like 4		RAD-like 4;(source:Araport11)
AT2G18690.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G18740.2	protein_coding	Small nuclear ribonucleoprotein family protein	Putative temperature-specific splice regulator of development. Only the first splice form (PCP-alpha) has this function as result of C-terminal addition.	Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT2G18860.2	protein_coding	Syntaxin/t-SNARE family protein		Syntaxin/t-SNARE family protein;(source:Araport11)
AT2G19045.1	protein_coding	RALF-like 13	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	RALF-like 13;(source:Araport11)
AT2G19425.1	miRNA_primary_transcript	MIR156G; miRNA	Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CGACAGAAGAGAGUGAGCAC	microRNA ath-MIR156g precursor;(source:Araport11)
AT2G19480.2	protein_coding	nucleosome assembly protein 1;2	This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation. The mRNA is cell-to-cell mobile.  Plants mutated in three ubiquitously expressed NAP1 genes (NAP1;1~NAP1;3) and organ-specifically expressed NAP1;4 gene show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. The NAP1 genes act synergistically with NRP genes in promoting somatic homologous recombination.	nucleosome assembly protein 1;(source:Araport11)
AT2G19582.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G19580;(source:Araport11)
AT2G19620.2	protein_coding	N-MYC downregulated-like 3		N-MYC downregulated-like 3;(source:Araport11)
AT2G19680.2	protein_coding	Mitochondrial ATP synthase subunit G protein		Mitochondrial ATP synthase subunit G protein;(source:Araport11)
AT2G19730.3	protein_coding	Ribosomal L28e protein family		Ribosomal L28e protein family;(source:Araport11)
AT2G19860.2	protein_coding	hexokinase 2	Encodes a protein with hexokinase activity (AtHXK2) and acts as a sensor for plant sugar responses.	hexokinase 2;(source:Araport11)
AT2G20010.2	protein_coding	Protein of unknown function (DUF810)		Gls protein (DUF810);(source:Araport11)
AT2G20100.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G20530.2	protein_coding	prohibitin 6		prohibitin 6;(source:Araport11)
AT2G20562.1	protein_coding		Encodes a putative signalling peptide with similarity to TAX1.  No known function has been demonstrated yet.	taximin;(source:Araport11)
AT2G20597.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT2G20605.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT2G20618.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT2G20619.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT2G21160.2	protein_coding	Translocon-associated protein (TRAP), alpha subunit		Translocon-associated protein (TRAP), alpha subunit;(source:Araport11)
AT2G21170.2	protein_coding	triosephosphate isomerase	Encodes a plastidic triose phosphate isomerase. Mutants with reduced pdTPI levels have difficulty transitioning from heterotrophic to autotrophic growth. The related phenotypes, such as chlorosis in light-grown seedlings may result from an accumulation of dihydroxyacetone phosphate (DHAP) and methylglyoxal (MG) in these mutants. Both splice variants appear to be expressed, but the At2g21170.2 variant appears to have a much narrower expression range limited to roots.	triosephosphate isomerase;(source:Araport11)
AT2G21187.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G21185;(source:Araport11)
AT2G21187.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G21185;(source:Araport11)
AT2G21188.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G21195.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G21270.3	protein_coding	ubiquitin fusion degradation 1		ubiquitin fusion degradation 1;(source:Araport11)
AT2G21385.2	protein_coding		Encodes a chloroplast stroma localized protein that is found only in the green plant lineage. It is involved in assembly of the chloroplast ATP synthase complex.	hypothetical protein;(source:Araport11)
AT2G21727.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT2G21895.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of Egg cell-secreted-like protein (DUF1278);(source:Araport11)
AT2G21905.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis related family protein;(source:Araport11)
AT2G21940.3	protein_coding	shikimate kinase 1	Encodes a shikimate kinase. Its transcripts appear to be expressed most highly in mature embryos and senescing leaves, and its transcript levels rise during heat stress and recovery. It is believed to be localized to the chloroplast.	shikimate kinase 1;(source:Araport11)
AT2G21940.4	protein_coding	shikimate kinase 1	Encodes a shikimate kinase. Its transcripts appear to be expressed most highly in mature embryos and senescing leaves, and its transcript levels rise during heat stress and recovery. It is believed to be localized to the chloroplast.	shikimate kinase 1;(source:Araport11)
AT2G21940.5	protein_coding	shikimate kinase 1	Encodes a shikimate kinase. Its transcripts appear to be expressed most highly in mature embryos and senescing leaves, and its transcript levels rise during heat stress and recovery. It is believed to be localized to the chloroplast.	shikimate kinase 1;(source:Araport11)
AT2G22055.1	protein_coding	RALF-like 15	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. This gene is contained within a highly AT-rich repetitive sequence region.	RALF-like 15;(source:Araport11)
AT2G22145.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT2G22155.1	protein_coding		Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis family protein;(source:Araport11)
AT2G22335.1	pseudogene		pseudogene of cytochrome P450 family protein	pseudogene of cytochrome P450;(source:Araport11)
AT2G22425.2	protein_coding	Microsomal signal peptidase 12 kDa subunit (SPC12)		Microsomal signal peptidase 12 kDa subunit (SPC12);(source:Araport11)
AT2G22668.1	miRNA_primary_transcript	MIR405A; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:ATGAGTTGGGTCTAACCCATAACT	microRNA ath-MIR405a precursor;(source:Araport11)
AT2G22670.3	protein_coding	indoleacetic acid-induced protein 8	Encodes a transcriptional repressor of the auxin response that is auxin inducible and is involved in lateral root formation. The mRNA is cell-to-cell mobile.	indoleacetic acid-induced protein 8;(source:Araport11)
AT2G22750.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G22955.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G22960;(source:Araport11)
AT2G22970.3	protein_coding	serine carboxypeptidase-like 11		serine carboxypeptidase-like 11;(source:Araport11)
AT2G22980.3	protein_coding	serine carboxypeptidase-like 13		serine carboxypeptidase-like 13;(source:Araport11)
AT2G22980.4	protein_coding	serine carboxypeptidase-like 13		serine carboxypeptidase-like 13;(source:Araport11)
AT2G23348.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G23930.2	protein_coding	probable small nuclear ribonucleoprotein G		Putative small nuclear ribonucleoprotein G;(source:Araport11)
AT2G24000.2	protein_coding	serine carboxypeptidase-like 22		serine carboxypeptidase-like 22;(source:Araport11)
AT2G24190.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes an aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons in vitro. In addition, this enzyme can reduce methylglyoxal in vitro. It is believed that this enzyme localizes to the cytosol like the closely related protein encoded by AT3G61220.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G24205.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT2G24390.2	protein_coding	AIG2-like (avirulence induced gene) family protein		AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT2G24545.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G24540;(source:Araport11)
AT2G24545.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G24540;(source:Araport11)
AT2G24692.1	protein_coding			BTB/POZ domain protein;(source:Araport11)
AT2G24755.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G24750 and AT2G24760;(source:Araport11)
AT2G24755.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G24750 and AT2G24760;(source:Araport11)
AT2G24755.3	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G24750 and AT2G24760;(source:Araport11)
AT2G24765.2	protein_coding	ADP-ribosylation factor 3	GTPase required for Golgi targeting of GRIP domain  proteins. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner	ADP-ribosylation factor 3;(source:Araport11)
AT2G25100.2	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G25312.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT2G25355.2	protein_coding	PNAS-3 related		PNAS-3-like protein;(source:Araport11)
AT2G25482.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	prolamin-like protein (DUF784);(source:Araport11)
AT2G25570.2	protein_coding	binding		binding protein;(source:Araport11)
AT2G26210.2	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT2G26430.3	protein_coding	arginine-rich cyclin 1	Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.	arginine-rich cyclin 1;(source:Araport11)
AT2G26500.3	protein_coding	cytochrome b6f complex subunit (petM), putative		cytochrome b6f complex subunit (petM);(source:Araport11)
AT2G26692.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G26690;(source:Araport11)
AT2G26865.1	protein_coding		Encodes a Plant thionin family protein	transmembrane protein;(source:Araport11)
AT2G27150.2	protein_coding	abscisic aldehyde oxidase 3	Encodes the aldehyde oxidase delta isoform  catalyzing the final step in abscisic acid  biosynthesis.	abscisic aldehyde oxidase 3;(source:Araport11)
AT2G27160.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G27170.2	protein_coding	Structural maintenance of chromosomes (SMC) family protein	Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.	Structural maintenance of chromosomes (SMC) family protein;(source:Araport11)
AT2G27340.4	protein_coding	N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein		N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein;(source:Araport11)
AT2G27810.3	protein_coding	nucleobase-ascorbate transporter 12	Encodes a plasma-membrane localized nucleobase transporter capable of transporting adenine, guanine, uracil and hypoxanthine. Likely to be a proton-nucleobase symporter.	nucleobase-ascorbate transporter 12;(source:Araport11)
AT2G28290.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral  homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates  flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation.  Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms  differs in juvenile and in adult tissues. The C-terminal domain is not required for activity. The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G28760.3	protein_coding	UDP-XYL synthase 6		UDP-XYL synthase 6;(source:Araport11)
AT2G29050.2	protein_coding	RHOMBOID-like 1		RHOMBOID-like 1;(source:Araport11)
AT2G29390.4	protein_coding	sterol 4-alpha-methyl-oxidase 2-2	Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.	sterol 4-alpha-methyl-oxidase 2-2;(source:Araport11)
AT2G29390.5	protein_coding	sterol 4-alpha-methyl-oxidase 2-2	Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.	sterol 4-alpha-methyl-oxidase 2-2;(source:Araport11)
AT2G29530.2	protein_coding	Tim10/DDP family zinc finger protein	Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. Together with AtTIM9, AtTIM10 is non-redundantly essential for maintaining mitochondrial function of early embryo proper cells and endosperm free-nuclei.	Tim10/DDP family zinc finger protein;(source:Araport11)
AT2G29540.3	protein_coding	RNApolymerase 14 kDa subunit	RNA polymerase I(A) and III(C) 14 kDa subunit	RNApolymerase 14 kDa subunit;(source:Araport11)
AT2G29960.2	protein_coding	cyclophilin 5	encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.	cyclophilin 5;(source:Araport11)
AT2G30140.2	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a putative glycosyltransferase. Regulates flowering time via FLOWERING LOCUS C.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G30170.2	protein_coding	Protein phosphatase 2C family protein	Encodes a chloroplast PP2C phosphatase that is required for efficient dephosphorylation of PSII proteins and involved in light acclimation.	Protein phosphatase 2C family protein;(source:Araport11)
AT2G30362.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G30360;(source:Araport11)
AT2G30480.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G30520.3	protein_coding	Phototropic-responsive NPH3 family protein	light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT2G30860.2	protein_coding	glutathione S-transferase PHI 9	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase PHI 9;(source:Araport11)
AT2G31005.1	protein_coding		Encodes a Cysteine-rich peptide (CRP) family protein	transmembrane protein;(source:Araport11)
AT2G31110.2	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT2G31170.2	protein_coding	Cysteinyl-tRNA synthetase, class Ia family protein	Encodes the cysteinyl t-RNA synthetase SYCO ARATH (SYCO), which is expressed and required in the central cell but not in the antipodals. SYCO, localized to the mitochondria, is necessary for mitochondrial cristae integrity.  Mutation of this gene affects the lifespan of adjacent accessory cells.	Cysteinyl-tRNA synthetase, class Ia family protein;(source:Araport11)
AT2G31335.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G31450.2	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT2G31585.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G31585.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G31870.2	protein_coding	Poly (ADP-ribose) glycohydrolase (PARG)	The gene encodes a poly(ADPribose) glycohydrolase (PARG1). Mutant analysis suggests that PARG1 plays a role in abiotic stress responses and DNA repair. Loss of function mutants accumulate poly(ADPribose) and have increased cell death when treated with bleomycin.	Poly (ADP-ribose) glycohydrolase (PARG);(source:Araport11)
AT2G32190.2	protein_coding			cysteine-rich/transmembrane domain A-like protein;(source:Araport11)
AT2G32250.3	protein_coding	FAR1-related sequence 2		FAR1-related sequence 2;(source:Araport11)
AT2G32273.1	miRNA_primary_transcript	MIR417 (MICRORNA417); miRNA	Encodes a microRNA. Mature sequence:GAAGGTAGTGAATTTGTTCGA.  Functions as a negative regulator of seed germination under salt stress conditions.	microRNA ath-MIR417 precursor;(source:Araport11)
AT2G32310.2	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT2G32460.2	protein_coding	myb domain protein 101	Member of the R2R3 factor gene family.	myb domain protein 101;(source:Araport11)
AT2G32487.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G32698.1	miRNA_primary_transcript	MIR407; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:TTTAAATCATATACTTTTGGT	microRNA ath-MIR407 precursor;(source:Araport11)
AT2G32785.1	protein_coding		Encodes a Rapid ALkalinization Factor (RALF) family protein	hypothetical protein;(source:Araport11)
AT2G32788.1	protein_coding		Encodes a Rapid ALkalinization Factor (RALF) family protein	transmembrane protein;(source:Araport11)
AT2G32795.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G32835.1	protein_coding	RALF-like 16	Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	RALF-like 16;(source:Araport11)
AT2G32885.1	protein_coding	Rapid alkalinization factor (RALF) family protein	Encodes a Rapid ALkalinization Factor (RALF) family protein	Rapid alkalinization factor (RALF) family protein;(source:Araport11)
AT2G33350.2	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT2G33360.2	protein_coding	Protein of unknown function (DUF3527)		cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527);(source:Araport11)
AT2G33815.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G33810;(source:Araport11)
AT2G33847.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G33847.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G34135.1	pseudogene		Encodes a Defensin-like (DEFL) family protein [pseudogene]	pseudogene of Cysteine-rich protein;(source:Araport11)
AT2G34202.1	miRNA_primary_transcript	MIR399D; miRNA	Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content.  miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Its expression is responsive to both phosphate (Pi) and phosphite (Phi) in shoots. Mature sequence: UGCCAAAGGAGAUUUGCCCCG	microRNA ath-MIR399d precursor;(source:Araport11)
AT2G34204.1	miRNA_primary_transcript	MIR399E; miRNA	Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content.  miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCAAAGGAGAUUUGCCUCG	microRNA ath-MIR399e precursor;(source:Araport11)
AT2G34208.1	miRNA_primary_transcript	MIR399F; miRNA	Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content.  Also modulates plant responses to salt, ABA, and drought. miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCAAAGGAGAUUUGCCCGG	microRNA ath-MIR399f precursor;(source:Araport11)
AT2G34825.1	protein_coding	RALF-like 20	Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	RALF-like 20;(source:Araport11)
AT2G34860.2	protein_coding	DnaJ/Hsp40 cysteine-rich domain superfamily protein		DnaJ/Hsp40 cysteine-rich domain superfamily protein;(source:Araport11)
AT2G34925.1	protein_coding	CLAVATA3/ESR-RELATED 42	Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The protein is expressed in leaf axils and the shoot apical meristem and is involved in axillary bud formation.	CLAVATA3/ESR-RELATED 42;(source:Araport11)
AT2G35010.2	protein_coding	thioredoxin O1		thioredoxin O1;(source:Araport11)
AT2G35140.2	protein_coding	DCD (Development and Cell Death) domain protein		DCD (Development and Cell Death) domain protein;(source:Araport11)
AT2G35345.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G35550.4	protein_coding	basic pentacysteine 7		basic pentacysteine 7;(source:Araport11)
AT2G35637.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G35640;(source:Araport11)
AT2G35738.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G35740;(source:Araport11)
AT2G35738.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G35740;(source:Araport11)
AT2G35738.3	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G35740;(source:Araport11)
AT2G35765.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G35945.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G35940;(source:Araport11)
AT2G36060.3	protein_coding	MMS ZWEI homologue 3	MMZ3/UEV1C encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1C can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ3/UEV1C transcripts are found at moderate levels in most plant organs, but cannot be detected in the pollen or 2 days after germination. Transcript levels do not appear to be stress-inducible.	MMS ZWEI homologue 3;(source:Araport11)
AT2G36307.1	other_rna	ZPR4 (LITTLE ZIPPER 4); other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT2G36325.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G36680.4	protein_coding	Modifier of rudimentary (Mod(r)) protein		Modifier of rudimentary (Mod(r)) protein;(source:Araport11)
AT2G36792.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G36790;(source:Araport11)
AT2G36792.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G36790;(source:Araport11)
AT2G36895.2	protein_coding			D-tagatose-1,6-bisphosphate aldolase subunit;(source:Araport11)
AT2G37260.2	protein_coding	WRKY family transcription factor family protein	Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds  are reduced in size but only when the mutant allele is transmitted through the female parent.Loss of function allele corresponding to the DSL QTL  are associated with a reduction in interploidy lethality.	WRKY family transcription factor family protein;(source:Araport11)
AT2G37450.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT2G37555.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G37550;(source:Araport11)
AT2G37600.2	protein_coding	Ribosomal protein L36e family protein		Ribosomal protein L36e family protein;(source:Araport11)
AT2G37678.1	protein_coding	far-red elongated hypocotyl 1	Positive regulator of photomorphogenesis in far-red light. Most abundant in young seedlings in the dark. Downregulated in the light and older as plants develop. Localized in the nucleus and the cytoplasm. Nuclear localization strongest in the dark. Degraded through the 26S proteasome. Regulated by PHYA. It is specifically required for the light-regulated nuclear accumulation of phyA ( but not phyB) likely by shuttling PHYA into the nucleus.	far-red elongated hypocotyl 1;(source:Araport11)
AT2G37760.4	protein_coding	NAD(P)-linked oxidoreductase superfamily protein	Encodes an NADPH-dependent aldo-keto reductase that can act on a wide variety of substrates in vitro including aliphatic and aromatic aldehydes and steroids. Transcript levels for this gene are up-regulated in response to cold, salt, and drought stress.	NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G38020.2	protein_coding	vacuoleless1 (VCL1)	necessary for proper vacuole formation and morphogenesis in Arabidopsis	vacuoleless1 (VCL1);(source:Araport11)
AT2G38152.1	protein_coding	alpha 1,4-glycosyltransferase family protein		alpha 1,4-glycosyltransferase family protein;(source:Araport11)
AT2G38325.1	miRNA_primary_transcript	MIR390A; miRNA	Encodes a microRNA that targets the TAS3 family of tasiRNA-generating transcripts.  Cleavage of TAS3 transcripts by miR390 initiates processing of these transcripts in a 21-nucleotide register.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AAGCUCAGGAGGGAUAGCGCC	microRNA ath-MIR390a precursor;(source:Araport11)
AT2G39310.2	protein_coding	jacalin-related lectin 22		jacalin-related lectin 22;(source:Araport11)
AT2G39470.3	protein_coding	PsbP-like protein 2		PsbP-like protein 2;(source:Araport11)
AT2G39518.1	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT2G39805.2	protein_coding	Integral membrane Yip1 family protein		Integral membrane Yip1 family protein;(source:Araport11)
AT2G39885.1	miRNA_primary_transcript	MIR393A; miRNA	Encodes a microRNA that targets several TIR1/AFB family members and one bHLH family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCCAAAGGGAUCGCAUUGAUCC. Targets are F-box proteins and bHLH transcription factor. Specifically cleaves AFB3 transcripts, controlling AFB3 mRNA accumulation in  roots in response to nitrate exposure. Pri-mRNA coordinates for MIR393a (converted to TAIR10 based on PMID19304749): Chr2: 16652027-16652572 (forward), length: 546 bp; exon coordinates: exon 1: 16652027 to 16652572; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR393a precursor;(source:Araport11)
AT2G39890.2	protein_coding	proline transporter 1	Encodes a proline transporter with affinity for gly betaine, proline and GABA.  Protein is expressed in the vascular tissue, specifically the phloem.	proline transporter 1;(source:Araport11)
AT2G39950.2	protein_coding			flocculation protein;(source:Araport11)
AT2G40008.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G40010;(source:Araport11)
AT2G40020.3	protein_coding	Nucleolar histone methyltransferase-related protein		Nucleolar histone methyltransferase-related protein;(source:Araport11)
AT2G40070.2	protein_coding		Encodes a microtubule-associated protein.	flocculation FLO11-like protein;(source:Araport11)
AT2G40316.2	protein_coding			autophagy-like protein;(source:Araport11)
AT2G40430.2	protein_coding		Encodes a homolog of yeast NOP53 that is an important regulator of cell division during organ growth.	Nop53 protein;(source:Araport11)
AT2G40520.2	protein_coding	Nucleotidyltransferase family protein		Nucleotidyltransferase family protein;(source:Araport11)
AT2G40540.2	protein_coding	potassium transporter 2	putative potassium transporter AtKT2p (AtKT2) mRNA,	potassium transporter 2;(source:Araport11)
AT2G40740.2	protein_coding	WRKY DNA-binding protein 55	member of WRKY Transcription Factor; Group III	WRKY DNA-binding protein 55;(source:Araport11)
AT2G40805.1	miRNA_primary_transcript	MIR319C; miRNA	Encodes a microRNA that targets several TCP family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGACUGAAGGGAGCUCCUU	microRNA ath-MIR319c precursor;(source:Araport11)
AT2G41060.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G41178.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G41180;(source:Araport11)
AT2G41312.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT2G41312.2	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT2G41415.1	protein_coding	Maternally expressed gene (MEG) family protein	Encodes a Maternally expressed gene (MEG) family protein	maternally expressed family protein;(source:Araport11)
AT2G41600.3	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT2G41780.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G41945.2	protein_coding		Encodes a novel protein found only in plants. RED1 has two isoforms RED1.1 and RED1.2. It is localized to the nucleus. Loss of function mutants are embryo lethal but can be rescued before desiccation by embryo culture.	transmembrane protein;(source:Araport11)
AT2G41997.1	protein_coding	low-molecular-weight cysteine-rich 51	Encodes a Defensin-like (DEFL) family protein	low-molecular-weight cysteine-rich 51;(source:Araport11)
AT2G42247.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G42250;(source:Araport11)
AT2G42330.2	protein_coding	GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain		GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein;(source:Araport11)
AT2G42365.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G42360 and AT2G42370;(source:Araport11)
AT2G42365.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G42360 and AT2G42370;(source:Araport11)
AT2G42388.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G42485.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G42670.2	protein_coding	Protein of unknown function (DUF1637)		2-aminoethanethiol dioxygenase, putative (DUF1637);(source:Araport11)
AT2G42835.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G42830;(source:Araport11)
AT2G42890.3	protein_coding	MEI2-like 2	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.	MEI2-like 2;(source:Araport11)
AT2G43235.1	protein_coding			phosphoribosylformylglycinamidine synthase;(source:Araport11)
AT2G43320.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G43410.2	protein_coding	RNA binding	FPA  is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous  pathway). Mutations in  FPA  result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.	RNA binding protein;(source:Araport11)
AT2G43410.3	protein_coding	RNA binding	FPA  is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous  pathway). Mutations in  FPA  result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.	RNA binding protein;(source:Araport11)
AT2G43410.4	protein_coding	RNA binding	FPA  is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous  pathway). Mutations in  FPA  result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.	RNA binding protein;(source:Araport11)
AT2G43445.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G43640.2	protein_coding	Signal recognition particle, SRP9/SRP14 subunit		Signal recognition particle, SRP9/SRP14 subunit;(source:Araport11)
AT2G43760.2	protein_coding	molybdopterin biosynthesis MoaE family protein		molybdopterin biosynthesis MoaE family protein;(source:Araport11)
AT2G43810.2	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT2G43910.2	protein_coding	HARMLESS TO OZONE LAYER 1		HARMLESS TO OZONE LAYER 1;(source:Araport11)
AT2G44100.2	protein_coding	guanosine nucleotide diphosphate dissociation inhibitor 1	GDP dissociation inhibitor involved in vesicular membrane traffic	guanosine nucleotide diphosphate dissociation inhibitor 1;(source:Araport11)
AT2G44255.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G44260;(source:Araport11)
AT2G44280.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G44470.2	protein_coding	beta glucosidase 29		beta glucosidase 29;(source:Araport11)
AT2G44530.2	protein_coding	Phosphoribosyltransferase family protein		Phosphoribosyltransferase family protein;(source:Araport11)
AT2G44578.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G44798.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G44800;(source:Araport11)
AT2G44860.2	protein_coding	Ribosomal protein L24e family protein		Ribosomal protein L24e family protein;(source:Araport11)
AT2G44970.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G45070.4	protein_coding	Preprotein translocase Sec, Sec61-beta subunit protein	Sec61 Beta Subunit	Preprotein translocase Sec, Sec61-beta subunit protein;(source:Araport11)
AT2G45245.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G45245.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G45245.3	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G45250.2	protein_coding	Integral membrane protein hemolysin-III homolog		integral membrane hemolysin-III-like protein;(source:Araport11)
AT2G45315.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G45310;(source:Araport11)
AT2G45315.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G45310;(source:Araport11)
AT2G45500.2	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT2G45695.1	protein_coding	Ubiquitin related modifier 1		Ubiquitin related modifier 1;(source:Araport11)
AT2G45950.2	protein_coding	SKP1-like 20		SKP1-like 20;(source:Araport11)
AT2G45960.2	protein_coding	plasma membrane intrinsic protein 1B	a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.	plasma membrane intrinsic protein 1B;(source:Araport11)
AT2G45960.3	protein_coding	plasma membrane intrinsic protein 1B	a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.	plasma membrane intrinsic protein 1B;(source:Araport11)
AT2G46230.2	protein_coding	PIN domain-like family protein		PIN domain-like family protein;(source:Araport11)
AT2G46255.1	miRNA_primary_transcript	MIR159C; miRNA	Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUUGGAUUGAAGGGAGCUCCU	microRNA ath-MIR159c precursor;(source:Araport11)
AT2G46370.3	protein_coding	Auxin-responsive GH3 family protein	Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.	Auxin-responsive GH3 family protein;(source:Araport11)
AT2G46640.2	protein_coding		Encodes TAC1 (Tiller Angle Control 1). Influences axillary branch growth angle. Inflorescence stems of TAC1 mutants are vertically oriented and have axillary shoots with narrow branch angles.	NAD-dependent protein deacetylase HST1-like protein;(source:Araport11)
AT2G47015.1	miRNA_primary_transcript	MIR408; miRNA	Encodes a microRNA that targets both a Laccase and Plantacyanin-like family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AUGCACUGCCUCUUCCCUGGC	microRNA ath-MIR408 precursor;(source:Araport11)
AT2G47160.2	protein_coding	HCO3- transporter family	Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. Localized to the  inner plasma membrane domain in the columella, lateral root cap,  epidermis, and endodermis in the root tip region, and in the  epidermis and endodermis in the elongation zone. Under high-boron is transported to the vacuole for degradation.	HCO3- transporter family;(source:Araport11)
AT2G47275.1	miRNA_primary_transcript	MIR403; miRNA	Encodes a microRNA that targets AGO2 and AGO3. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUAGAUUCACGCACAAACUCG Thought to be dicot specific. It has homologs in 16 dicot species.	microRNA ath-MIR403 precursor;(source:Araport11)
AT2G47300.2	protein_coding	ribonuclease Ps	Encodes a protein involved in rRNA but not tRNA maturation.	ribonuclease Ps;(source:Araport11)
AT2G47300.3	protein_coding	ribonuclease Ps	Encodes a protein involved in rRNA but not tRNA maturation.	ribonuclease Ps;(source:Araport11)
AT2G47470.4	protein_coding	thioredoxin family protein	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response. The mRNA is cell-to-cell mobile.	thioredoxin family protein;(source:Araport11)
AT2G47510.2	protein_coding	fumarase 1	Encodes a mitochondrial-localized protein. The FUM1 gene appears to be essential, suggesting that FUM1 may play a crucial role as a fumarase in the tricarboxylic acid cycle.	fumarase 1;(source:Araport11)
AT2G47640.4	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT2G47850.2	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT2G47850.3	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT2G47895.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G47900;(source:Araport11)
AT2G48120.2	protein_coding	pale cress protein (PAC)	The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC binds 23srRNA and appears to be required for  50s ribosome assembly. Three alternative transcripts of this gene exist.PAC is essential for photoautotrophic growth and associates with psbK-psbI, ndhF, ndhD, and 23S ribosomal RNA in vivo(PMID:28805278)	pale cress protein (PAC);(source:Araport11)
AT3G01202.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G01200;(source:Araport11)
AT3G01322.1	protein_coding	ECA1-like gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1-like gametogenesis related family protein;(source:Araport11)
AT3G01324.1	protein_coding	ECA1-like gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1-like gametogenesis related family protein;(source:Araport11)
AT3G01326.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT3G01327.1	protein_coding	ECA1-like gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1-like gametogenesis related family protein;(source:Araport11)
AT3G01328.1	protein_coding	ECA1-like gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1-like gametogenesis related family protein;(source:Araport11)
AT3G01329.1	protein_coding	ECA1-like gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1-like gametogenesis related family protein;(source:Araport11)
AT3G01331.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT3G01410.2	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G01810.2	protein_coding			EEIG1/EHBP1 protein amino-terminal domain protein;(source:Araport11)
AT3G01910.3	protein_coding	sulfite oxidase	Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor.  It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum.  SO protein has been found in all parts of the plant. The plant SO combines its enzymatic  sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.	sulfite oxidase;(source:Araport11)
AT3G01980.3	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G01980.4	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G02060.2	protein_coding	DEAD/DEAH box helicase, putative		DEAD/DEAH box helicase;(source:Araport11)
AT3G02470.3	protein_coding	S-adenosylmethionine decarboxylase	Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.	S-adenosylmethionine decarboxylase;(source:Araport11)
AT3G02493.1	protein_coding	ROTUNDIFOLIA like 19		ROTUNDIFOLIA like 19;(source:Araport11)
AT3G02515.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family	transposable_element_gene;(source:Araport11)
AT3G02600.2	protein_coding	lipid phosphate phosphatase 3	Encodes phosphatidic acid phosphatase. Expressed during germination.	lipid phosphate phosphatase 3;(source:Araport11)
AT3G02600.3	protein_coding	lipid phosphate phosphatase 3	Encodes phosphatidic acid phosphatase. Expressed during germination.	lipid phosphate phosphatase 3;(source:Araport11)
AT3G02600.4	protein_coding	lipid phosphate phosphatase 3	Encodes phosphatidic acid phosphatase. Expressed during germination.	lipid phosphate phosphatase 3;(source:Araport11)
AT3G02600.5	protein_coding	lipid phosphate phosphatase 3	Encodes phosphatidic acid phosphatase. Expressed during germination.	lipid phosphate phosphatase 3;(source:Araport11)
AT3G03020.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G03272.1	protein_coding	Protein of unknown function (DUF1278)	Encodes a ECA1 gametogenesis related family protein	prolamin-like protein (DUF1278);(source:Araport11)
AT3G03300.2	protein_coding	dicer-like 2	Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants.  Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.	dicer-like 2;(source:Araport11)
AT3G03702.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G03700;(source:Araport11)
AT3G04280.3	protein_coding	response regulator 22	Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators.	response regulator 22;(source:Araport11)
AT3G04420.2	protein_coding	NAC domain containing protein 48		NAC domain containing protein 48;(source:Araport11)
AT3G04485.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G04600.3	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT3G04640.2	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT3G04640.3	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT3G04735.1	protein_coding	RALF-like 21	Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	RALF-like 21;(source:Araport11)
AT3G04765.1	miRNA_primary_transcript	MIR167C; miRNA	Encodes a microRNA that targets ARF family members ARF6 and ARF8.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAAGCUGCCAGCAUGAUCUUG	microRNA ath-MIR167c precursor;(source:Araport11)
AT3G04960.2	protein_coding	Domain of unknown function (DUF3444)		trichohyalin, putative (DUF3444);(source:Araport11)
AT3G04960.3	protein_coding	Domain of unknown function (DUF3444)		trichohyalin, putative (DUF3444);(source:Araport11)
AT3G05030.2	protein_coding	sodium hydrogen exchanger 2	Encodes a vacuolar K+/H+ exchanger essential for active K+ uptake at the tonoplast and involved in regulating stomatal closure.	sodium hydrogen exchanger 2;(source:Araport11)
AT3G05152.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G05160.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G05560.3	protein_coding	Ribosomal L22e protein family		Ribosomal L22e protein family;(source:Araport11)
AT3G06040.3	protein_coding	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein		Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein;(source:Araport11)
AT3G06125.1	other_rna	other RNA	Unknown gene The mRNA is cell-to-cell mobile.	other_RNA;(source:Araport11)
AT3G06125.2	other_rna	other RNA	Unknown gene The mRNA is cell-to-cell mobile.	other_RNA;(source:Araport11)
AT3G06125.3	other_rna	other RNA	Unknown gene The mRNA is cell-to-cell mobile.	other_RNA;(source:Araport11)
AT3G06330.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G06440.2	protein_coding	Galactosyltransferase family protein	Encodes a Golgi-localized hydroxyproline-O-galactosyltransferase.  Mutants display multiple phenotypes including reduced root hair growth and reduced seed coat mucilage.	Galactosyltransferase family protein;(source:Araport11)
AT3G06550.2	protein_coding	O-acetyltransferase family protein	Encodes a homolog of the protein Cas1p known to be involved in polysaccharide O-acetylation in Cryptococcus neoformans.  Mutants show reduced cell wall polysaccharide acetylation and increased resistance to Botrytis cinerea. The protein is expressed in the Golgi and is involved in the acetylation of xylan during secondary wall biosynthesis.	O-acetyltransferase family protein;(source:Araport11)
AT3G06778.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G06820.2	protein_coding	Mov34/MPN/PAD-1 family protein		Mov34/MPN/PAD-1 family protein;(source:Araport11)
AT3G06995.1	pseudogene		Encodes a Defensin-like (DEFL) family protein [pseudogene]	pseudogene of low-molecular-weight cysteine-rich 44;(source:Araport11)
AT3G07200.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G07215.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G07215.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G07215.3	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G07510.2	protein_coding			maternal effect embryo arrest protein;(source:Araport11)
AT3G07610.2	protein_coding	Transcription factor jumonji (jmjC) domain-containing protein	IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or the CMT3 non CG-cytosine methylase.	Transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT3G07740.3	protein_coding	homolog of yeast ADA2 2A	encodes a transcriptional adaptor ADA2a that interacts with histone acetyltransferase GCN5 homolog and CBF1	ADA2 2A;(source:Araport11)
AT3G07890.2	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT3G08710.2	protein_coding	thioredoxin H-type 9	Associated to plasma membrane. Moves cell to cell, suggesting a role in intercellular communication.	thioredoxin H-type 9;(source:Araport11)
AT3G09200.2	protein_coding	Ribosomal protein L10 family protein		Ribosomal protein L10 family protein;(source:Araport11)
AT3G09350.2	protein_coding	Fes1A	Encodes one of the Arabidopsis orthologs of the human Hsp70-binding protein 1 (HspBP-1) and yeast Fes1p: Fes1A (AT3G09350), Fes1B (AT3G53800), Fes1C (AT5G02150). Fes1A is cytosolic and associates with cytosolic Hsp70.  Mutants showed increased heat-sensitive phenotype suggestion the involvement of Fes1A in acquired thermotolerance.  Does not have nucleotide exchange factor activity in vitro.	Fes1A;(source:Araport11)
AT3G09370.2	protein_coding	myb domain protein 3r-3	C-myb-like transcription factor (MYB3R3) mRNA. It is a target of CDK phosphorylation and  blocks cell division in response to DNA damage.	myb domain protein 3r-3;(source:Araport11)
AT3G09670.2	protein_coding	Tudor/PWWP/MBT superfamily protein	PWWP domain protein involved in regulation of FLC and flowering time.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT3G10030.2	protein_coding	aspartate/glutamate/uridylate kinase family protein		aspartate/glutamate/uridylate kinase family protein;(source:Araport11)
AT3G10185.1	protein_coding	Gibberellin-regulated family protein	Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein	Gibberellin-regulated family protein;(source:Araport11)
AT3G10230.2	protein_coding	lycopene cyclase	Encodes a protein with lycopene &#946;-cyclase activity. This enzyme uses the linear, symmetrical lycopene as substrate. However, unlike the &#949;-cyclase which adds only one ring, the &#946;-cyclase introduces a ring at both ends of lycopene to form the bicyclic &#946;-carotene.	lycopene cyclase;(source:Araport11)
AT3G10580.2	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G10915.4	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G10970.3	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G11230.2	protein_coding	Yippee family putative zinc-binding protein		Yippee family putative zinc-binding protein;(source:Araport11)
AT3G11435.1	miRNA_primary_transcript	MIR172C; miRNA	Encodes a microRNA that targets several genes containing AP2 domains including AP2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AGAAUCUUGAUGAUGCUGCAG	microRNA ath-MIR172c precursor;(source:Araport11)
AT3G11560.4	protein_coding	LETM1-like protein		LETM1-like protein;(source:Araport11)
AT3G11825.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G11945.1	protein_coding	homogentisate prenyltransferase	Encodes a protein involved in plastoquinone-9 biosynthesis. The enzyme possesses homogentisate prenyltransferase activity and was shown to use solanesyl diphosphate, farnesyl diphosphate and geranylgeranyldiphosphate as prenyl donors, but not phytyldiphosphate.  This gene At3g11945 derives from a split of At3g11950, publications Tian et al (2007) and Sadre et al (2006) refer to this gene as At3g11950.	homogentisate prenyltransferase;(source:Araport11)
AT3G12080.2	protein_coding	GTP-binding family protein	Encodes a putative plastid-targeted GTP-binding protein that is essential for embryogenesis and chloroplast development.	GTP-binding family protein;(source:Araport11)
AT3G12120.2	protein_coding	fatty acid desaturase 2	Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome b5.  Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	fatty acid desaturase 2;(source:Araport11)
AT3G12250.5	protein_coding	TGACG motif-binding factor 6	basic leucine zipper transcription factor involved in the activation of SA-responsive genes.	TGACG motif-binding factor 6;(source:Araport11)
AT3G12502.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G12500;(source:Araport11)
AT3G12600.2	protein_coding	nudix hydrolase homolog 16		nudix hydrolase homolog 16;(source:Araport11)
AT3G12965.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT3G13190.3	protein_coding	Plant protein of unknown function (DUF827)		WEB family protein (DUF827);(source:Araport11)
AT3G13432.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G13437.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G13438.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family	transposable_element_gene;(source:Araport11)
AT3G13800.2	protein_coding	Metallo-hydrolase/oxidoreductase superfamily protein		Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT3G13890.2	protein_coding	myb domain protein 26	Encodes a putative transcription factor (MYB26).	myb domain protein 26;(source:Araport11)
AT3G13920.3	protein_coding	eukaryotic translation initiation factor 4A1	eukaryotic translation initiation factor 4A-1	eukaryotic translation initiation factor 4A1;(source:Araport11)
AT3G13990.2	protein_coding	Kinase-related protein of unknown function (DUF1296)		dentin sialophosphoprotein, putative (DUF1296);(source:Araport11)
AT3G14010.2	protein_coding	CTC-interacting domain 4	hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2.	CTC-interacting domain 4;(source:Araport11)
AT3G14010.3	protein_coding	CTC-interacting domain 4	hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2.	CTC-interacting domain 4;(source:Araport11)
AT3G14150.2	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G14172.1	protein_coding			GPI-anchored adhesin-like protein;(source:Araport11)
AT3G14185.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G14362.1	protein_coding	ROTUNDIFOLIA like 10		ROTUNDIFOLIA like 10;(source:Araport11)
AT3G14385.1	miRNA_primary_transcript	MIR169F; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGAGCCAAGGAUGACUUGCCG. Pri-mRNA coordinates for MIR169f (converted to TAIR10 based on PMID19304749): Chr3: 4805948-4805214  (reverse), length: 735 bp; exon coordinates: exon 1: 4805948 to 4805214; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR169f precursor;(source:Araport11)
AT3G14420.5	protein_coding	Aldolase-type TIM barrel family protein	Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance. The mRNA is cell-to-cell mobile.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G14420.6	protein_coding	Aldolase-type TIM barrel family protein	Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance. The mRNA is cell-to-cell mobile.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G15020.2	protein_coding	Lactate/malate dehydrogenase family protein		Lactate/malate dehydrogenase family protein;(source:Araport11)
AT3G15095.2	protein_coding		Encodes HCF243 (high chlorophyll fluorescence), a chloroplast-localized protein involved in the D1 protein stability of the photosystem II complex1.	Serine/Threonine-kinase pakA-like protein;(source:Araport11)
AT3G15240.2	protein_coding	Serine/threonine-protein kinase WNK (With No Lysine)-related		Serine/threonine-protein kinase WNK (With No Lysine)-like protein;(source:Araport11)
AT3G15395.4	protein_coding			HrpN-interacting protein from malus protein;(source:Araport11)
AT3G15400.2	protein_coding	anther 20	Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.	anther 20;(source:Araport11)
AT3G15640.2	protein_coding	Rubredoxin-like superfamily protein		Rubredoxin-like superfamily protein;(source:Araport11)
AT3G15720.2	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G16565.2	protein_coding	alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding		threonyl and alanyl tRNA synthetase second additional domain-containing protein;(source:Araport11)
AT3G16700.2	protein_coding	Fumarylacetoacetate (FAA) hydrolase family		Fumarylacetoacetate (FAA) hydrolase family;(source:Araport11)
AT3G16950.2	protein_coding	lipoamide dehydrogenase 1	encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds.	lipoamide dehydrogenase 1;(source:Araport11)
AT3G17152.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G17185.2	other_rna	TAS3/TASIR-ARF (TRANS-ACTING SIRNA3); other RNA	Encodes a trans-acting siRNA (tasi-RNA) that regulates the expression of auxin response factor genes (ARF2, ARF4, ETT). One of 3 genomic loci that encode the TAS3 siRNA. Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT3G17300.2	protein_coding			COMPLEX 1 LYR-like protein;(source:Araport11)
AT3G17330.2	protein_coding	evolutionarily conserved C-terminal region 6		evolutionarily conserved C-terminal region 6;(source:Araport11)
AT3G17609.4	protein_coding	HY5-homolog	Encodes a homolog of HY5 (HYH).  Involved in phyB signaling pathway.	HY5-homolog;(source:Araport11)
AT3G17611.3	protein_coding	RHOMBOID-like protein 14		RHOMBOID-like protein 14;(source:Araport11)
AT3G17668.1	protein_coding	DnaJ/Hsp40 cysteine-rich domain superfamily protein		DnaJ/Hsp40 cysteine-rich domain superfamily protein;(source:Araport11)
AT3G17675.1	protein_coding	Cupredoxin superfamily protein	Encodes a Plantacyanin/Basic blue family protein	Cupredoxin superfamily protein;(source:Araport11)
AT3G17800.2	protein_coding	Protein of unknown function (DUF760)	mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem	alanine-tRNA ligase, putative (DUF760);(source:Araport11)
AT3G17860.3	protein_coding	jasmonate-zim-domain protein 3	JAZs are direct targets of the SCFCOI1 E3 ubiquitin-ligase and JA treatment  induces their proteasome-mediated degradation. Furthermore, JAI3 negatively  regulates the key transcriptional activator of JA responses, AtMYC2. The C-terminal portion of JAZ3, including the Jas domain, appears to be important for JAZ3-COI1 binding in the presence of coronatine.	jasmonate-zim-domain protein 3;(source:Araport11)
AT3G17880.2	protein_coding	tetraticopeptide domain-containing thioredoxin	Encodes a thioredoxin-like disulfide reductase.  The protein interacts with the yeast Hsp70 protein Ssb2 in vitro.  This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX.	tetraticopeptide domain-containing thioredoxin;(source:Araport11)
AT3G18070.2	protein_coding	beta glucosidase 43		beta glucosidase 43;(source:Araport11)
AT3G18210.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620), participates in epigenetic repression of flowering genes, works redundantly with ICU11 to repress several members of the MADS-box transcription factors family, during vegetative development via histone modification.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G18362.1	other_rna	other RNA		None;(source:Araport11)
AT3G18500.2	protein_coding	DNAse I-like superfamily protein	Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT3G18518.1	protein_coding	ROTUNDIFOLIA like 20	Member of a family of small polypeptides found only in angiosperm lineages.Contains a conserved 29 amino acid domain (RTF or DVL domain).	ROTUNDIFOLIA like 20;(source:Araport11)
AT3G18535.1	protein_coding	tubulin-tyrosine ligases		tubulin-tyrosine ligase;(source:Araport11)
AT3G18715.1	protein_coding	inflorescence deficient in abscission (IDA)-like 4	Similar to Inflorescance deficient in abscission (IDA). Involved in floral organ abscission.	inflorescence deficient in abscission (IDA)-like 4;(source:Araport11)
AT3G18760.2	protein_coding	Translation elongation  factor EF1B/ribosomal protein S6 family protein		Translation elongation factor EF1B/ribosomal protein S6 family protein;(source:Araport11)
AT3G18840.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		LOW protein: PPR containing-like protein;(source:Araport11)
AT3G18845.1	pseudogene		Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]	pseudogene of Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G18850.4	protein_coding	lysophosphatidyl acyltransferase 5		lysophosphatidyl acyltransferase 5;(source:Araport11)
AT3G18850.5	protein_coding	lysophosphatidyl acyltransferase 5		lysophosphatidyl acyltransferase 5;(source:Araport11)
AT3G18895.1	miRNA_primary_transcript	MIR418; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:TAATGTGATGATGAACTGACC	microRNA ath-MIR418 precursor;(source:Araport11)
AT3G18980.2	protein_coding	EIN2 targeting protein1		EIN2 targeting protein1;(source:Araport11)
AT3G19460.2	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G19508.1	protein_coding			complex 1 protein, LYR family protein;(source:Araport11)
AT3G19515.2	protein_coding			apoptosis inhibitor;(source:Araport11)
AT3G19615.1	protein_coding			beta-1,4-xylosidase;(source:Araport11)
AT3G19790.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G20020.2	protein_coding	protein arginine methyltransferase 6		protein arginine methyltransferase 6;(source:Araport11)
AT3G20060.2	protein_coding	ubiquitin-conjugating enzyme19	Encodes one of two ubiquitin-conjugating enzymes  belonging to the E2-C gene family (the other being UBC19). Transcript is always found in dividing cells, but also in other non-dividing cells. Protein is localized to the cytoplasm as well as to the nucleus.	ubiquitin-conjugating enzyme19;(source:Araport11)
AT3G20130.2	protein_coding	cytochrome P450, family 705, subfamily A, polypeptide 22	Encodes a member of the CYP705A family of cytochrome P450 enzymes. Mutants show altered gravitropic responses.	cytochrome P450, family 705, subfamily A, polypeptide 22;(source:Araport11)
AT3G20395.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G20978.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G20975;(source:Araport11)
AT3G21295.1	protein_coding	Tudor/PWWP/MBT superfamily protein	Pro-Trp-Pro-Trp repeat protein.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT3G21352.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G21430.2	protein_coding	DNA binding		DNA binding protein;(source:Araport11)
AT3G21460.1	protein_coding	Glutaredoxin family protein	Encodes a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2 and suppress ORA59 promoter activity.	Glutaredoxin family protein;(source:Araport11)
AT3G21755.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G21760;(source:Araport11)
AT3G21755.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G21760;(source:Araport11)
AT3G22142.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G22275.1	protein_coding		Encodes a non-TIFY JAsmonate ZIM-domain (JAZ) protein with  a Ser-rich C-terminal tail that is a site for phosphorylation that interacts with the bHLH transcription factor MYC2 and the co-repressor TOPLESS and acts as a repressor of JA signaling. JAZ13 is the 13th member of the JAZ family in Arabidopsis, and the only member not classified as a TIFY protein.	jasmonate ZIM-domain protein;(source:Araport11)
AT3G23255.1	protein_coding			tRNA dimethylallyltransferase;(source:Araport11)
AT3G23290.2	protein_coding	Protein of unknown function (DUF640)		LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
AT3G23635.1	protein_coding	ROTUNDIFOLIA like 13		ROTUNDIFOLIA like 13;(source:Araport11)
AT3G23637.1	protein_coding	DVL family protein	Member of a family of small polypeptides found only in angiosperm lineages.Contains a conserved 29 amino acid domain (RTF or DVL domain).	DVL family protein;(source:Araport11)
AT3G23645.1	pseudogene		Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]	pseudogene of protease inhibitor/seed storage/lipid transfer family protein;(source:Araport11)
AT3G24360.2	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT3G24465.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT3G24518.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G24520;(source:Araport11)
AT3G25440.2	protein_coding	RNA-binding CRS1 / YhbY (CRM) domain protein		RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT3G25840.2	protein_coding	Protein kinase superfamily protein	Spliceosome-associated kinase involved in alternative splicing. May influence alternative splicing patterns by phosphorylating a subset of splicing regulators.	Protein kinase superfamily protein;(source:Araport11)
AT3G25890.2	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. The mRNA is cell-to-cell mobile.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G26085.2	protein_coding	CAAX amino terminal protease family protein		CAAX amino terminal protease family protein;(source:Araport11)
AT3G26440.3	protein_coding	Protein of unknown function (DUF707)		transmembrane protein, putative (DUF707);(source:Araport11)
AT3G26612.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT3G26782.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G26812.1	miRNA_primary_transcript	MIR169I; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG	microRNA ath-MIR169i precursor;(source:Araport11)
AT3G26813.1	miRNA_primary_transcript	MIR169J; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG	microRNA ath-MIR169j precursor;(source:Araport11)
AT3G26815.1	miRNA_primary_transcript	MIR169K; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG	microRNA ath-MIR169k precursor;(source:Araport11)
AT3G26816.1	miRNA_primary_transcript	MIR169L; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG	microRNA ath-MIR169l precursor;(source:Araport11)
AT3G26818.1	miRNA_primary_transcript	MIR169M; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG	microRNA ath-MIR169m precursor;(source:Araport11)
AT3G26819.1	miRNA_primary_transcript	MIR169N; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG	microRNA ath-MIR169n precursor;(source:Araport11)
AT3G26934.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G27300.3	protein_coding	glucose-6-phosphate dehydrogenase 5		glucose-6-phosphate dehydrogenase 5;(source:Araport11)
AT3G27340.3	protein_coding			Myb domain protein;(source:Araport11)
AT3G27425.1	protein_coding	ECA1-like gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1-like gametogenesis related family protein;(source:Araport11)
AT3G27470.2	protein_coding	Protein of unknown function (DUF707)		lysine ketoglutarate reductase trans-splicing protein (DUF707);(source:Araport11)
AT3G27740.2	protein_coding	carbamoyl phosphate synthetase A	Encodes carbamoyl phosphate synthetase (CPS) small subunit (carA), also named as VEN6. Heterologous expression of the Arabidopsis VEN3 and VEN6 genes in a CPS-deficient Escherichia coli strain fully restored bacterial growth in minimal medium, demonstrating the enzymatic activity of the VEN3 and VEN6 proteins.	carbamoyl phosphate synthetase A;(source:Araport11)
AT3G27770.2	protein_coding			plant/protein;(source:Araport11)
AT3G27884.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	None;(source:Araport11)
AT3G28985.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis related family protein;(source:Araport11)
AT3G29020.2	protein_coding	myb domain protein 110	Encodes a putative transcription factor (MYB110).	myb domain protein 110;(source:Araport11)
AT3G29152.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G29575.4	protein_coding	ABI five binding protein 3		ABI five binding protein 3;(source:Araport11)
AT3G29639.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G29644.1	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT3G29642. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT3G29642;(source:Araport11)
AT3G29644.2	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT3G29642. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT3G29642;(source:Araport11)
AT3G29797.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT3G30247.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT3G30383.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT3G30384.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT3G30385.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT3G30386.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT3G30387.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT3G30388.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT3G31442.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family	transposable_element_gene;(source:Araport11)
AT3G33528.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G42180.3	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT3G42181.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT3G42565.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT3G42658.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family.In some natural accessions the allele is  methylated and silenced.	transposable_element_gene;(source:Araport11)
AT3G44042.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family.In some natural accessions the allele is  methylated and silenced.	transposable_element_gene;(source:Araport11)
AT3G44117.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT3G44212.1	pseudogene		Encodes a Maternally expressed gene (MEG) family protein [pseudogene]	unknown protein;(source:Araport11)
AT3G44310.3	protein_coding	nitrilase 1	Mutants are resistant to indole-3-acetonitrile (IAN). NIT1 catalyzes the terminal activation step in indole-acetic acid biosynthesis. Predominantly expressed isoform of nitrilase isoenzyme family.   Aggregation of NIT1 in cells directly abutting wound sites is one of the earliest events associated with wound and herbicide-induced cell death.  The protein undergoes thiolation following treatment with the  oxidant tert-butylhydroperoxide. It is also involved in the conversion of IAN to IAM (indole-3-acetamide) and other non-auxin-related metabolic processes. The mRNA is cell-to-cell mobile.	nitrilase 1;(source:Araport11)
AT3G44428.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT3G44470.2	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT3G44670.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G44718.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT3G44765.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G45243.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT3G45245.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT3G45248.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT3G45252.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT3G45275.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT3G45285.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT3G45590.2	protein_coding	splicing endonuclease 1	Encodes a catalytic subunit of tRNA splicing endonuclease.	splicing endonuclease 1;(source:Araport11)
AT3G45638.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G45638.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G45870.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G46010.2	protein_coding	actin depolymerizing factor 1	Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo.	actin depolymerizing factor 1;(source:Araport11)
AT3G46060.2	protein_coding	RAB GTPase homolog 8A	small GTP-binding protein (ara-3) The mRNA is cell-to-cell mobile.	RAB GTPase homolog 8A;(source:Araport11)
AT3G46130.3	protein_coding	myb domain protein 48	Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.	myb domain protein 48;(source:Araport11)
AT3G46210.5	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT3G46600.3	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT3G46613.1	protein_coding	ROTUNDIFOLIA like 4	Encodes a small  is a member of an angiosperm specific gene family.	ROTUNDIFOLIA like 4;(source:Araport11)
AT3G46658.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G46660;(source:Araport11)
AT3G46668.1	antisense_long_noncoding_rna	other RNA		None;(source:Araport11)
AT3G46770.2	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G47050.2	protein_coding	Glycosyl hydrolase family protein		Glycosyl hydrolase family protein;(source:Araport11)
AT3G47836.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G48115.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G48115.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G48205.1	protein_coding		Encodes a Plant thionin family protein	plant thionin family protein;(source:Araport11)
AT3G48208.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT3G48209.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT3G48500.2	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT3G49010.4	protein_coding	breast basic conserved 1	Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).	breast basic conserved 1;(source:Araport11)
AT3G49010.5	protein_coding	breast basic conserved 1	Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).	breast basic conserved 1;(source:Araport11)
AT3G49270.2	protein_coding			extensin-like protein;(source:Araport11)
AT3G49270.3	protein_coding			extensin-like protein;(source:Araport11)
AT3G49430.2	protein_coding	SER/ARG-rich protein 34A	Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SER/ARG-rich protein 34A;(source:Araport11)
AT3G49720.2	protein_coding		Encodes CGR2 (cotton Golgi-related 2). CGR2 and a close homologue CGR3 have overlapping roles in plant growth and pectin methylesterification in the Golgi apparatus.	transmembrane protein;(source:Araport11)
AT3G50170.2	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G50845.1	protein_coding	Protein of unknown function (DUF59)		MIP18 family protein (DUF59);(source:Araport11)
AT3G51040.3	protein_coding	RTE1-homolog	Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids.	RTE1-homolog;(source:Araport11)
AT3G51075.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT3G51880.3	protein_coding	high mobility group B1	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.	high mobility group B1;(source:Araport11)
AT3G52050.3	protein_coding	5'-3' exonuclease family protein		5-3 exonuclease family protein;(source:Araport11)
AT3G52050.4	protein_coding	5'-3' exonuclease family protein		5-3 exonuclease family protein;(source:Araport11)
AT3G52055.1	pseudogene		Encodes a Plantacyanin/Basic blue family protein [pseudogene]	pseudogene of copper ion binding / electron carrier protein;(source:Araport11)
AT3G52072.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G52070;(source:Araport11)
AT3G52072.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G52070;(source:Araport11)
AT3G52535.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G52540;(source:Araport11)
AT3G52535.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G52540;(source:Araport11)
AT3G52560.3	protein_coding	ubiquitin E2 variant 1D-4	MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1D can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ4/UEV1D transcripts are found in most plant organs, like the other three MMZ/UEV1 family members, but it is normally present at higher levels. In addition, MMZ4/UEV1D is the only family member whose transcripts are detected in pollen. However, MMZ4/UEV1D transcript levels do not appear to be stress-inducible. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays.	ubiquitin E2 variant 1D-4;(source:Araport11)
AT3G52605.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G52610;(source:Araport11)
AT3G52605.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G52610;(source:Araport11)
AT3G52630.2	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT3G52748.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT3G52905.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT3G52990.2	protein_coding	Pyruvate kinase family protein		Pyruvate kinase family protein;(source:Araport11)
AT3G53270.5	protein_coding	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein		Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein;(source:Araport11)
AT3G53520.3	protein_coding	UDP-glucuronic acid decarboxylase 1	Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis.  This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate  several cell wall biosynthetic enzymes.	UDP-glucuronic acid decarboxylase 1;(source:Araport11)
AT3G53610.3	protein_coding	RAB GTPase homolog 8	GTPase AtRAB8 (atrab8)	RAB GTPase homolog 8;(source:Araport11)
AT3G53740.4	protein_coding	Ribosomal protein L36e family protein		Ribosomal protein L36e family protein;(source:Araport11)
AT3G53890.2	protein_coding	Ribosomal protein S21e 	Cytosolic ribosomal protein. Mutants enhance the varigation effect of var2 mutations suggesting a link between cytosolic translation and chloroplast development.	Ribosomal protein S21e;(source:Araport11)
AT3G53930.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G54085.1	protein_coding	Yos1-like protein		Yos1-like protein;(source:Araport11)
AT3G54300.2	protein_coding	vesicle-associated membrane protein 727	Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal.	vesicle-associated membrane protein 727;(source:Araport11)
AT3G54350.3	protein_coding	Forkhead-associated (FHA) domain-containing protein 		Forkhead-associated (FHA) domain-containing protein;(source:Araport11)
AT3G54625.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G54630;(source:Araport11)
AT3G54740.2	protein_coding	Protein of unknown function, DUF593		zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT3G54790.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G54840.2	protein_coding	Ras-related small GTP-binding family protein	Encodes a novel Rab-like  GTP-ase that is localized to the peripheral membrane of the endosome. . In its active state interferes with the assembly of GDP-bound ARA7, PUF2, and VPS9a by competitively binding to PUF2 to diminish endosomal transport mediated by canonical RAB5.	Ras-related small GTP-binding family protein;(source:Araport11)
AT3G54890.4	protein_coding	photosystem I light harvesting complex gene 1	Encodes a component of the light harvesting complex associated with photosystem I.	chlorophyll a-b binding protein 6;(source:Araport11)
AT3G54910.3	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT3G54990.2	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ),  share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G55070.2	protein_coding	LisH/CRA/RING-U-box domains-containing protein		LisH/CRA/RING-U-box domains-containing protein;(source:Araport11)
AT3G55252.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G55280.2	protein_coding	ribosomal protein L23AB	60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA.	ribosomal protein L23AB;(source:Araport11)
AT3G55280.3	protein_coding	ribosomal protein L23AB	60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA.	ribosomal protein L23AB;(source:Araport11)
AT3G55400.2	protein_coding	methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS)		methionyl-tRNA synthetase / methionine-tRNA ligase / MetRS (cpMetRS);(source:Araport11)
AT3G55470.2	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G55490.1	protein_coding	GINS complex protein		GINS complex protein;(source:Araport11)
AT3G55512.1	miRNA_primary_transcript	MIR172D; miRNA	Encodes a microRNA that targets several genes containing AP2 domains including AP2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AGAAUCUUGAUGAUGCUGCAG	microRNA ath-MIR172d precursor;(source:Araport11)
AT3G55515.1	protein_coding	ROTUNDIFOLIA like 7		ROTUNDIFOLIA like 7;(source:Araport11)
AT3G55665.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G55734.1	miRNA_primary_transcript	MIR393B; miRNA	Encodes a microRNA that targets several TIR1/AFB family members and one bHLH family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCCAAAGGGAUCGCAUUGAUCC. Targets are: F-box proteins and bHLH transcription factor. Specifically cleaves AFB3 transcripts, controlling AFB3 mRNA accumulation in  roots in response to nitrate exposure.	microRNA ath-MIR393b precursor;(source:Araport11)
AT3G56050.2	protein_coding	Protein kinase family protein		Protein kinase family protein;(source:Araport11)
AT3G56070.2	protein_coding	rotamase cyclophilin 2	rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction.	rotamase cyclophilin 2;(source:Araport11)
AT3G56210.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G56210.4	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G56830.3	protein_coding	Protein of unknown function (DUF565)	Similar in sequence to NPQ6 and NPQ7, but loss of function mutant does not exhibit a nonphotochemical quenching phenotype.	YCF20-like protein (DUF565);(source:Araport11)
AT3G57230.2	protein_coding	AGAMOUS-like 16	MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. AGL16 can directly interact with SVP and indirectly interact with FLC. Furthermore, the accumulation of AGL16 transcripts is modulated by miR824 (AT4G24415). The flowering time effect for the miR824/AGL16 module is more obvious in the Col-FRI background than in the Col-0 background. AGL16 controls flowering via a allelic dosage effect in long-day non-vernalized conditions.	AGAMOUS-like 16;(source:Araport11)
AT3G57320.2	protein_coding			threonine-tRNA ligase 2;(source:Araport11)
AT3G57810.3	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G58490.2	protein_coding	Phosphatidic acid phosphatase (PAP2) family protein	Encodes a long-chain base 1-phosphate (LCBP) phosphatase that is expressed in the endoplasmic reticulum.	Phosphatidic acid phosphatase (PAP2) family protein;(source:Araport11)
AT3G58610.2	protein_coding	ketol-acid reductoisomerase		ketol-acid reductoisomerase;(source:Araport11)
AT3G58670.2	protein_coding	Protein of unknown function (DUF1637)		2-aminoethanethiol dioxygenase, putative (DUF1637);(source:Araport11)
AT3G58780.2	protein_coding	K-box region and MADS-box transcription factor family protein 	One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT3G58795.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G58790;(source:Araport11)
AT3G58840.2	protein_coding	Tropomyosin-related	Encodes PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1. Involved in the morphogenesis and proliferation of peroxisomes and mitochondria.	Tropomyosin-like protein;(source:Araport11)
AT3G58865.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family	transposable_element_gene;(source:Araport11)
AT3G59455.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G59640.2	protein_coding	glycine-rich protein	Plasma membrane localized. glycine rich protein of unknown function. Involved in non host resistance.	glycine-rich protein;(source:Araport11)
AT3G59695.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G59690;(source:Araport11)
AT3G59765.1	other_rna	other RNA		None;(source:Araport11)
AT3G59845.2	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT3G60130.3	protein_coding	beta glucosidase 16		beta glucosidase 16;(source:Araport11)
AT3G60240.2	protein_coding	eukaryotic translation initiation factor 4G	protein synthesis initiation factor 4G (EIF4G).  A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication.	eukaryotic translation initiation factor 4G;(source:Araport11)
AT3G60240.3	protein_coding	eukaryotic translation initiation factor 4G	protein synthesis initiation factor 4G (EIF4G).  A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication.	eukaryotic translation initiation factor 4G;(source:Araport11)
AT3G60240.4	protein_coding	eukaryotic translation initiation factor 4G	protein synthesis initiation factor 4G (EIF4G).  A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication.	eukaryotic translation initiation factor 4G;(source:Araport11)
AT3G60260.4	protein_coding	ELMO/CED-12 family protein		ELMO/CED-12 family protein;(source:Araport11)
AT3G60972.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G61028.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G61070.2	protein_coding	peroxin 11E	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.	peroxin 11E;(source:Araport11)
AT3G61118.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G61198.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G61430.2	protein_coding	plasma membrane intrinsic protein 1A	a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. The mRNA is cell-to-cell mobile.	plasma membrane intrinsic protein 1A;(source:Araport11)
AT3G61440.2	protein_coding	cysteine synthase C1	Encodes a cysteine synthase isomer CysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an intermediate of cyanide detoxification pathway. The mRNA is cell-to-cell mobile.	cysteine synthase C1;(source:Araport11)
AT3G61700.2	protein_coding	Plant protein 1589 of unknown function		helicase with zinc finger protein;(source:Araport11)
AT3G61740.2	protein_coding	SET domain protein 14	Encodes SET domain containing protein that acts redundantly with ATX4/5 to regulate histone H3-K4 methylation.	SET domain protein 14;(source:Araport11)
AT3G61850.3	protein_coding	Dof-type zinc finger DNA-binding family protein	Zinc finger transcription factor of the Dof family involved in the control of seed germination.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT3G62080.2	protein_coding	SNF7 family protein	Encodes a charged multi-vesicular body protein (CHMP7) homolog, that is an ESCRT-III-related protein and functions in the endosomal sorting pathway in humans. The Brassica homolog has been shown to be involved in plant growth and leaf senescence.	SNF7 family protein;(source:Araport11)
AT3G62090.2	protein_coding	phytochrome interacting factor 3-like 2	encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.	phytochrome interacting factor 3-like 2;(source:Araport11)
AT3G62620.2	protein_coding	sucrose-phosphatase-related	Encodes a protein of unknown function. Previously this protein has been annotated computationally as a sucrose-phosphatase-related protein. However, the source of this annotation can not be verified. This annotation (sucrose-phosphatase-related) has been removed.	sucrose-phosphatase-like protein;(source:Araport11)
AT3G62840.2	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT3G63088.1	protein_coding	ROTUNDIFOLIA like 14		ROTUNDIFOLIA like 14;(source:Araport11)
AT3G63095.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G63180.2	protein_coding	TIC-like		TIC-like protein;(source:Araport11)
AT3G63445.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G63440;(source:Araport11)
AT3G63445.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G63440;(source:Araport11)
AT3G63445.3	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G63440;(source:Araport11)
AT3G63510.2	protein_coding	FMN-linked oxidoreductases superfamily protein		FMN-linked oxidoreductases superfamily protein;(source:Araport11)
AT4G00165.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G00180.2	protein_coding	Plant-specific transcription factor YABBY family protein	YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.	Plant-specific transcription factor YABBY family protein;(source:Araport11)
AT4G00440.2	protein_coding	Protein of unknown function (DUF3741)		GPI-anchored adhesin-like protein, putative (DUF3741);(source:Araport11)
AT4G00440.3	protein_coding	Protein of unknown function (DUF3741)		GPI-anchored adhesin-like protein, putative (DUF3741);(source:Araport11)
AT4G00520.2	protein_coding	Acyl-CoA thioesterase family protein		Acyl-CoA thioesterase family protein;(source:Araport11)
AT4G00893.1	protein_coding			F-box/kelch-repeat protein;(source:Araport11)
AT4G00975.1	antisense_rna	other RNA		Natural antisense transcript overlaps with AT4G00980;(source:Araport11)
AT4G01290.2	protein_coding		Protein with evolutionarily conserved eIF4E-binding motif in its N-terminal domain that can form mRNA cap?binding complexes and has the potential for regulating gene expression as a translation factor associated plant-specific cell cycle regulator.	chorismate synthase;(source:Araport11)
AT4G01505.1	pseudogene		Encodes a Plantacyanin/Basic blue family protein [pseudogene]	pseudogene of copper ion binding / electron carrier protein;(source:Araport11)
AT4G01533.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G01540.2	protein_coding	NAC with transmembrane motif1	Encodes a membrane-bound NAC (for NAM, ATAF1/2, CUC2) transcription factor, designated NTM1 (for NAC with transmembrane motif1).  NTM1 regulates cell division in Arabidopsis.	NAC with transmembrane motif1;(source:Araport11)
AT4G01550.2	protein_coding	NAC domain containing protein 69	Encodes a plasma-membrane bound NAC transcription factor, whose controlled proteolytic activation allows it to enter the nucleus.	NAC domain containing protein 69;(source:Araport11)
AT4G01593.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G01595;(source:Araport11)
AT4G01593.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G01595;(source:Araport11)
AT4G01850.2	protein_coding	S-adenosylmethionine synthetase 2		S-adenosylmethionine synthetase 2;(source:Araport11)
AT4G02005.1	other_rna	other RNA		None;(source:Araport11)
AT4G02380.2	protein_coding	senescence-associated gene 21	Encodes AtLEA5 (late embryogenesis abundant like protein).  Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21).  Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses.	senescence-associated gene 21;(source:Araport11)
AT4G02725.2	protein_coding			spindle pole body-associated protein;(source:Araport11)
AT4G02760.2	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G03038.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G03298.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G03438.1	miRNA_primary_transcript	MIR447C; miRNA	Encodes a microRNA that targets several 2-phosphoglycerate kinase-related family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGGGACGACAUCUUUUGUUG	microRNA ath-MIR447c precursor;(source:Araport11)
AT4G03445.1	miRNA_primary_transcript	MIR447A; miRNA	Encodes a microRNA that targets several 2-phosphoglycerate kinase-related family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGGGACGAGAUGUUUUGUUG	microRNA ath-MIR447a precursor;(source:Araport11)
AT4G03455.1	miRNA_primary_transcript	MIR447B; miRNA	Encodes a microRNA that targets several 2-phosphoglycerate kinase-related family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGGGACGAGAUGUUUUGUUG	microRNA ath-MIR447b precursor;(source:Araport11)
AT4G03635.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT4G03811.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G03935.1	other_rna	other RNA		None;(source:Araport11)
AT4G04223.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G04223.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G04315.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G04570.2	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 40	Encodes a cysteine-rich receptor-like protein kinase. The mRNA is cell-to-cell mobile.	cysteine-rich RLK (RECEPTOR-like protein kinase) 40;(source:Araport11)
AT4G05105.1	miRNA_primary_transcript	MIR397A; miRNA	Encodes a microRNA that targets several Laccase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCAUUGAGUGCAGCGUUGAUG	microRNA ath-MIR397a precursor;(source:Araport11)
AT4G05320.6	protein_coding	polyubiquitin 10	One of five polyubiquitin genes in A. thaliana.  These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. The mRNA is cell-to-cell mobile.	polyubiquitin 10;(source:Araport11)
AT4G05440.2	protein_coding	temperature sensing protein-related	Plays a role in pollen development and modulating DNA replication via interaction with MCM4 and MCM7 of the pre-replication complex.	temperature sensing protein-like protein;(source:Araport11)
AT4G05508.1	miRNA_primary_transcript	MIR405D; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:ATGAGTTGGGTCTAACCCATAACT	microRNA ath-MIR405d precursor;(source:Araport11)
AT4G06701.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G06701.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G06701.3	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G06701.4	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G06701.5	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G07410.2	protein_coding	Transducin family protein / WD-40 repeat family protein	Encodes a WD-40 protein expressed both during embryo development and postembryonically in the SAM and RAM that functions in the auxin pathway, integrating auxin signaling in the organization and maintenance of the SAM and RAM.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G08035.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G08035.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G08116.1	miRNA_primary_transcript	MIR401; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:CGAAACTGGTGTCGACCGACA	microRNA ath-MIR401 precursor;(source:Araport11)
AT4G08390.3	protein_coding	stromal ascorbate peroxidase	Encodes a chloroplastic stromal ascorbate peroxidase sAPX.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. The mRNA is cell-to-cell mobile.	stromal ascorbate peroxidase;(source:Araport11)
AT4G08590.2	protein_coding	ORTHRUS-like		ORTHRUS-like protein;(source:Araport11)
AT4G08691.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G08980.4	protein_coding	F-BOX WITH WD-40 2	Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response. It is a F-box subunit of the SCF E3 ubiquitin ligase complex that mediates the degradation of 14-3-3 proteins.	F-BOX WITH WD-40 2;(source:Araport11)
AT4G09040.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G09465.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT4G09545.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT4G09840.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G09960.3	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a MADS box transcription factor expressed in the carpel and ovules. Plays a maternal role in fertilization and seed development. Controls the structure and mechanical properties of the seed coat.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT4G09980.2	protein_coding	Methyltransferase MT-A70 family protein	Encodes a member of a core set of mRNA m6A writer proteins and is required for N6-adenosine methylation of mRNA.	Methyltransferase MT-A70 family protein;(source:Araport11)
AT4G10100.3	protein_coding	co-factor for nitrate, reductase and xanthine dehydrogenase 7	molybdenum cofactor synthesis family protein, similar to Molybdenum cofactor synthesis protein 2 small subunit (Molybdopterin- synthase small subunit) (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) (Homo sapiens); contains TIGRFAM TIGR01682: molybdopterin converting factor, subunit 1; sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.	co-factor for nitrate, reductase and xanthine dehydrogenase 7;(source:Araport11)
AT4G10400.2	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT4G10465.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G10480.2	protein_coding	Nascent polypeptide-associated complex (NAC), alpha subunit family protein		Nascent polypeptide-associated complex (NAC), alpha subunit family protein;(source:Araport11)
AT4G10550.2	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G10720.2	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G10920.2	protein_coding	transcriptional coactivator p15 (PC4) family protein (KELP)	Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein.  Both proteins are involved in gene activation during pathogen defense and plant development.	transcriptional coactivator p15 (PC4) family protein (KELP);(source:Araport11)
AT4G11100.2	protein_coding			gelsolin protein;(source:Araport11)
AT4G11653.1	protein_coding	RALF-like 29	Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	RALF-like 29;(source:Araport11)
AT4G11845.1	protein_coding	Interleukin-1 receptor-associated kinase 4 protein		Interleukin-1 receptor-associated kinase 4 protein;(source:Araport11)
AT4G12460.2	protein_coding	OSBP(oxysterol binding protein)-related protein 2B		OSBP(oxysterol binding protein)-related protein 2B;(source:Araport11)
AT4G12560.2	protein_coding	F-box and associated interaction domains-containing protein	Encodes CPR1 (Constitutive Expresser of PR Genes 1, also known as CPR30), a F-Box protein that functions as a negative regulator of defense response and targets resistance proteins.	F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G12790.4	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G12825.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G12850.2	protein_coding	Far-red impaired responsive (FAR1) family protein	Encodes one of four FRS (FAR1-RELATED SEQUENCE) factor-like genes in Arabidopsis.  FRS factors are characterized by having an N-terminal C2H2-type chelating motif of the WRKY- Glial Cell Missing1 family, a central core transposase domain of Mutator-like element transposases, and a C-terminal SWIM domain. The four FRF-like genes in  Arabidopsis share only the N-terminal motif with FRS proteins.	Far-red impaired responsive (FAR1) family protein;(source:Araport11)
AT4G12917.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G13040.2	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the AP2/EREBP transcription factor family that has only one AP2 domain. It is a positive regulator of disease defense that functions upstream of SA accumulation.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G13075.1	protein_coding	RALF-like 30	Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	RALF-like 30;(source:Araport11)
AT4G13100.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G13395.1	protein_coding	ROTUNDIFOLIA like 12		ROTUNDIFOLIA like 12;(source:Araport11)
AT4G13495.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G13495.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G13505.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G13510;(source:Araport11)
AT4G13555.1	miRNA_primary_transcript	MIR397B; miRNA	Encodes a microRNA, expressed in shoot vasculature and apical meristem, that targets several Laccase family members. Over expression of mir397B causes increased shoot and seed size and lignification; this phenotype is correlated with decreased expression of Lac4.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCAUUGAGUGCAUCGUUGAUG	microRNA ath-MIR397b precursor;(source:Araport11)
AT4G13850.3	protein_coding	glycine-rich RNA-binding protein 2	Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.	glycine-rich RNA-binding protein 2;(source:Araport11)
AT4G13850.4	protein_coding	glycine-rich RNA-binding protein 2	Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.	glycine-rich RNA-binding protein 2;(source:Araport11)
AT4G13940.4	protein_coding	S-adenosyl-L-homocysteine hydrolase	Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. The mRNA is cell-to-cell mobile.	S-adenosyl-L-homocysteine hydrolase;(source:Araport11)
AT4G14350.3	protein_coding	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein		AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT4G14695.2	protein_coding	Uncharacterised protein family (UPF0041)		Uncharacterized protein family (UPF0041);(source:Araport11)
AT4G14710.3	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT4G14910.2	protein_coding	HISTIDINE BIOSYNTHESIS 5B	Encodes a protein that is predicted to act as a imidazoleglycerol-phosphate dehydratase involved in histidine biosynthesis	HISTIDINE BIOSYNTHESIS 5B;(source:Araport11)
AT4G15000.2	protein_coding	Ribosomal L27e protein family		Ribosomal L27e protein family;(source:Araport11)
AT4G15345.1	pseudogene		cytochrome P450 pseudogene	pseudogene of cytochrome P450;(source:Araport11)
AT4G15393.2	protein_coding	cytochrome P450, family 702, subfamily A, polypeptide 5	a member of the cytochrome P450 gene family. molecular function unknown.	cytochrome P450, family 702, subfamily A, polypeptide 5;(source:Araport11)
AT4G15393.3	protein_coding	cytochrome P450, family 702, subfamily A, polypeptide 5	a member of the cytochrome P450 gene family. molecular function unknown.	cytochrome P450, family 702, subfamily A, polypeptide 5;(source:Araport11)
AT4G15398.1	pseudogene		cytochrome P450 pseudogene	pseudogene of cytochrome P450;(source:Araport11)
AT4G15530.4	protein_coding	pyruvate orthophosphate dikinase	Encodes a dual-targeted protein believed to act as a pyruvate, orthophosphate dikinase. These enzymes are normally associated with C4 photosynthesis which does not occur in Arabidopsis. However, PPDK may play a role in remobilizing nitrogen during leaf senescence in Arabidopsis. The product of the long transcript (.1 gene model) was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. The two proteins were also found to be expressed in slightly different tissues.	pyruvate orthophosphate dikinase;(source:Araport11)
AT4G15530.5	protein_coding	pyruvate orthophosphate dikinase	Encodes a dual-targeted protein believed to act as a pyruvate, orthophosphate dikinase. These enzymes are normally associated with C4 photosynthesis which does not occur in Arabidopsis. However, PPDK may play a role in remobilizing nitrogen during leaf senescence in Arabidopsis. The product of the long transcript (.1 gene model) was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. The two proteins were also found to be expressed in slightly different tissues.	pyruvate orthophosphate dikinase;(source:Araport11)
AT4G15953.1	protein_coding	Maternally expressed gene (MEG) family protein	Encodes a Maternally expressed gene (MEG) family protein	maternally expressed family protein;(source:Araport11)
AT4G15955.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G16267.1	pseudogene		Encodes a Plant thionin family protein [pseudogene]	pseudogene of peroxidase superfamily protein;(source:Araport11)
AT4G16830.2	protein_coding	Hyaluronan / mRNA binding family	Encodes a perinuclear and cytoplasmically localized mRNA binding protein. AtRGGA is likely involved in stress responsivness. It is induced by salt and osmotic stress and loss of function mutations are more sensitive to stress. The mRNA is cell-to-cell mobile.	Hyaluronan / mRNA binding family;(source:Araport11)
AT4G16830.3	protein_coding	Hyaluronan / mRNA binding family	Encodes a perinuclear and cytoplasmically localized mRNA binding protein. AtRGGA is likely involved in stress responsivness. It is induced by salt and osmotic stress and loss of function mutations are more sensitive to stress. The mRNA is cell-to-cell mobile.	Hyaluronan / mRNA binding family;(source:Araport11)
AT4G17085.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT4G17098.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G17100;(source:Araport11)
AT4G17680.2	protein_coding	SBP (S-ribonuclease binding protein) family protein		SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT4G17730.2	protein_coding	syntaxin of plants  23	member of SYP2 Gene Family	syntaxin of plants 23;(source:Araport11)
AT4G17900.2	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT4G18020.4	protein_coding	CheY-like two-component responsive regulator family protein	Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).	CheY-like two-component responsive regulator family protein;(source:Araport11)
AT4G18360.2	protein_coding	Aldolase-type TIM barrel family protein	Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT4G18390.2	protein_coding	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2		TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2;(source:Araport11)
AT4G19110.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G19670.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G20050.2	protein_coding	Pectin lyase-like superfamily protein	Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.	Pectin lyase-like superfamily protein;(source:Araport11)
AT4G20320.2	protein_coding	CTP synthase family protein	Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT4G20325.1	protein_coding			ribonuclease H2 subunit B;(source:Araport11)
AT4G20362.1	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT4G20360. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT4G20360;(source:Araport11)
AT4G20380.7	protein_coding	LSD1 zinc finger family protein	LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge	LSD1 zinc finger family protein;(source:Araport11)
AT4G21065.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G21065.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G21105.2	protein_coding	cytochrome-c oxidases;electron carriers		cytochrome-c oxidase/ electron carrier;(source:Araport11)
AT4G21192.1	protein_coding	Cytochrome c oxidase biogenesis protein Cmc1-like		Cytochrome c oxidase biogenesis protein Cmc1-like protein;(source:Araport11)
AT4G21192.2	protein_coding	Cytochrome c oxidase biogenesis protein Cmc1-like		Cytochrome c oxidase biogenesis protein Cmc1-like protein;(source:Araport11)
AT4G21580.3	protein_coding	oxidoreductase, zinc-binding dehydrogenase family protein		oxidoreductase, zinc-binding dehydrogenase family protein;(source:Araport11)
AT4G21590.2	protein_coding	endonuclease 3	Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.	endonuclease 3;(source:Araport11)
AT4G21595.1	miRNA_primary_transcript	MIR169G; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAGCCAAGGAUGACUUGCCG	microRNA ath-MIR169g precursor;(source:Araport11)
AT4G21745.1	protein_coding	PAK-box/P21-Rho-binding family protein		PAK-box/P21-Rho-binding family protein;(source:Araport11)
AT4G21830.2	protein_coding	methionine sulfoxide reductase B7		methionine sulfoxide reductase B7;(source:Araport11)
AT4G21860.2	protein_coding	methionine sulfoxide reductase B 2		methionine sulfoxide reductase B 2;(source:Araport11)
AT4G21980.2	protein_coding	Ubiquitin-like superfamily protein	Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of  vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced  carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization  is more abundant upon N starvation. The mRNA is cell-to-cell mobile.	Ubiquitin-like superfamily protein;(source:Araport11)
AT4G22120.2	protein_coding	ERD (early-responsive to dehydration stress) family protein	Calcium-permeable stretch activated cation channel.	ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G22233.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G22235;(source:Araport11)
AT4G22233.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G22235;(source:Araport11)
AT4G22285.1	protein_coding	Ubiquitin C-terminal hydrolases superfamily protein		Ubiquitin C-terminal hydrolases superfamily protein;(source:Araport11)
AT4G22485.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G22505.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G22513.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G22517.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G22860.2	protein_coding	Cell cycle regulated microtubule associated protein		Cell cycle regulated microtubule associated protein;(source:Araport11)
AT4G22890.4	protein_coding	PGR5-LIKE A	Encodes PGRL1A, a transmembrane protein present in thylakoids.  PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). The mRNA is cell-to-cell mobile.	PGR5-LIKE A;(source:Araport11)
AT4G22890.5	protein_coding	PGR5-LIKE A	Encodes PGRL1A, a transmembrane protein present in thylakoids.  PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). The mRNA is cell-to-cell mobile.	PGR5-LIKE A;(source:Araport11)
AT4G23010.2	protein_coding	UDP-galactose transporter 2		UDP-galactose transporter 2;(source:Araport11)
AT4G23090.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G23205.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G23210.3	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 13	Encodes a Cysteine-rich receptor-like kinase (CRK13).  Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.	cysteine-rich RLK (RECEPTOR-like protein kinase) 13;(source:Araport11)
AT4G23860.3	protein_coding	PHD finger protein-related		PHD finger protein-like protein;(source:Araport11)
AT4G23895.2	protein_coding	Pleckstrin homology (PH) domain-containing protein		Pleckstrin homology (PH) domain-containing protein;(source:Araport11)
AT4G24220.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	encodes a progesterone-5beta-reductase-like  protein. It has enone reductase activity against a wide range of substrates, including 3-oxo-&#916;-4,5-steroids in vitro. The in vivo substrates and product of this enzyme have not yet been elucidated but it is likely to participate in steroid metabolism. The protein contains a mammalian death domain involved in programmed cell death. The gene is expressed in the vascular system and mutants carrying a dominant mutation in the gene have defective vascular patterning. VEP1 gene expression is induced specifically by wounding.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G24230.3	protein_coding	acyl-CoA-binding domain 3	acyl-CoA-binding protein ACBP3. Localized  extracellularly in transiently expressed tobacco BY-2  cells and onion epidermal cells. Binds arachidonyl-CoA with high  affinity. Microarray data shows up-regulation of many biotic- and abiotic-stress-related genes in an ACBP3 OE-1 in comparison to wild type.	acyl-CoA-binding domain 3;(source:Araport11)
AT4G24230.4	protein_coding	acyl-CoA-binding domain 3	acyl-CoA-binding protein ACBP3. Localized  extracellularly in transiently expressed tobacco BY-2  cells and onion epidermal cells. Binds arachidonyl-CoA with high  affinity. Microarray data shows up-regulation of many biotic- and abiotic-stress-related genes in an ACBP3 OE-1 in comparison to wild type.	acyl-CoA-binding domain 3;(source:Araport11)
AT4G24230.5	protein_coding	acyl-CoA-binding domain 3	acyl-CoA-binding protein ACBP3. Localized  extracellularly in transiently expressed tobacco BY-2  cells and onion epidermal cells. Binds arachidonyl-CoA with high  affinity. Microarray data shows up-regulation of many biotic- and abiotic-stress-related genes in an ACBP3 OE-1 in comparison to wild type.	acyl-CoA-binding domain 3;(source:Araport11)
AT4G24400.2	protein_coding	CBL-interacting protein kinase 8	Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. Regulates the low-affinity phase of the primary nitrate response. The mRNA is cell-to-cell mobile.	CBL-interacting protein kinase 8;(source:Araport11)
AT4G24415.1	miRNA_primary_transcript	MIR824a; miRNA	Encodes a microRNA that targets AGL16. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAGACCAUUUGUGAGAAGGGA	microRNA ath-MIR824 precursor;(source:Araport11)
AT4G24490.2	protein_coding	RAB geranylgeranyl transferase alpha subunit 1		RAB geranylgeranyl transferase alpha subunit 1;(source:Araport11)
AT4G24620.2	protein_coding	phosphoglucose isomerase 1	The PGI1 gene encodes the plastid phospho-glucose (Glc) isomerase. While pgi1-1 mutant has a deficiency in leaf starch synthesis, it accumulates starch in root cap cells. Flowering time of the pgi1-1 mutant is significantly delayed under short-day conditions.	phosphoglucose isomerase 1;(source:Araport11)
AT4G25225.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G25235.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1-like gametogenesis related family protein;(source:Araport11)
AT4G25450.3	protein_coding	non-intrinsic ABC protein 8	member of NAP subfamily	non-intrinsic ABC protein 8;(source:Araport11)
AT4G25500.3	protein_coding	arginine/serine-rich splicing factor 35	Encodes an arginine/serine-rich splicing factor. The transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS40 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis (DOI:10.1093/nar/gkv751).	arginine/serine-rich splicing factor 35;(source:Araport11)
AT4G25800.2	protein_coding	Calmodulin-binding protein		Calmodulin-binding protein;(source:Araport11)
AT4G26095.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G26090;(source:Araport11)
AT4G26255.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G26288.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G26470.2	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT4G26488.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G26490;(source:Araport11)
AT4G26795.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G26790;(source:Araport11)
AT4G26795.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G26790;(source:Araport11)
AT4G27050.4	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G27410.3	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	Encodes a NAC transcription factor induced in response to desiccation. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT4G27610.3	protein_coding			intracellular protein transporter;(source:Araport11)
AT4G28250.2	protein_coding	expansin B3	putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin B3;(source:Araport11)
AT4G28260.2	protein_coding			acyl-UDP-N-acetylglucosamine O-acyltransferase;(source:Araport11)
AT4G28397.1	protein_coding			non-specific lipid-transfer-like protein;(source:Araport11)
AT4G28397.2	protein_coding			non-specific lipid-transfer-like protein;(source:Araport11)
AT4G28480.2	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT4G28520.4	protein_coding	cruciferin 3	Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	cruciferin 3;(source:Araport11)
AT4G28640.2	protein_coding	indole-3-acetic acid inducible 11	Auxin induced gene, IAA11  (IAA11). Check the Comments field on the locus page to view updated sequence annotation.	indole-3-acetic acid inducible 11;(source:Araport11)
AT4G28680.2	protein_coding	L-tyrosine decarboxylase	Encodes a stress-induced tyrosine   decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine.  Recombinant TyrDC forms tetramers.	L-tyrosine decarboxylase;(source:Araport11)
AT4G28811.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G28815.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G28830.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G28860.2	protein_coding	casein kinase I-like 4	Member of CKL gene family (CKL-A group)	casein kinase I-like 4;(source:Araport11)
AT4G28910.3	protein_coding	novel interactor of JAZ	Encodes a transcriptional repressor that functions in the jasmonic acid (JA) signalling pathway, root development, and has a key role in leaf development, likely due to the transcriptional regulation of CYCD3 expression.	Putative interactor of JAZ;(source:Araport11)
AT4G29035.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT4G29160.3	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT4G29170.2	protein_coding	Mnd1 family protein	A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis.	Mnd1 family protein;(source:Araport11)
AT4G29410.2	protein_coding	Ribosomal L28e protein family		Ribosomal L28e protein family;(source:Araport11)
AT4G29930.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G30820.3	protein_coding	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related		cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30845.1	protein_coding			DNA-directed RNA polymerase subunit beta;(source:Araport11)
AT4G30975.1	other_rna	other RNA		None;(source:Araport11)
AT4G31398.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G31400;(source:Araport11)
AT4G31580.2	protein_coding	serine/arginine-rich 22	Encodes a Serine/arginine-rich (SR) protein RSZp22.  SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain.  RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	serine/arginine-rich 22;(source:Araport11)
AT4G31700.2	protein_coding	ribosomal protein S6	Encodes a putative ribosomal protein S6 (rps6a). RPS6A and RPS6B are fully redundant and essential during gametogenesis.	ribosomal protein S6;(source:Araport11)
AT4G32060.2	protein_coding	calcium-binding EF hand family protein	Encodes an EF-hand protein with homology to constituents of the mitochondrial Ca2+ uniporter machinery in mammals. MICU binds Ca2+ and localizes to the mitochondria in Arabidopsis.  It is a negative regulator of mitochondrial calcium uptake. Mutants display elevated matrix calcium at steady state and modified calcium transient kinetics in vivo.	calcium-binding EF hand family protein;(source:Araport11)
AT4G32205.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11);similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1);(source:TAIR10)
AT4G32272.1	protein_coding	Nucleotide/sugar transporter family protein	Golgi-localized nucleotide sugar (UDP-GlcNAc) transporter that delivers an essential substrate for the maturation of N-glycans and the GIPC class of sphingolipids.	Nucleotide/sugar transporter family protein;(source:Araport11)
AT4G32295.2	protein_coding			histone acetyltransferase;(source:Araport11)
AT4G32445.1	miRNA_primary_transcript	MIR419; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:TTATGAATGCTGAGGATGTTG	microRNA ath-MIR419 precursor;(source:Araport11)
AT4G32605.1	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT4G32700.2	protein_coding	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding	Encodes a DNA polymerase required for microhomology mediated repair of DNA double strand breaks and is required for T-DNA integration. The protein contains two conserved functional domains: an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in the meristem. Mutant plants had 2.5 to 4.5-fold higher expression of ATGR1, ATBRCA1 and RAD51 genes. TEB is required for normal progression of DNA replication and for correct expression of genes during development.	MUS308 and mammalian DNA polymerase-like protein;(source:Araport11)
AT4G33130.3	protein_coding			rho GTPase-activating protein;(source:Araport11)
AT4G33240.2	protein_coding	1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases	Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain.  fab1a/fab1b pollen grains not viable and have defective vacuolar organization. FAB1A and FAB1B complement the enlarged vacuolar phenotype of the fission yeast ste12delta mutant.	1-phosphatidylinositol-3-phosphate 5-kinase FAB1A;(source:Araport11)
AT4G33467.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G33467.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G33510.2	protein_coding	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase	Enzyme catalyzing the first committed step in aromatic amino acid biosynthesis The mRNA is cell-to-cell mobile.	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase;(source:Araport11)
AT4G33550.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G33585.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G33770.2	protein_coding	Inositol 1,3,4-trisphosphate 5/6-kinase family protein	Inositol pyrophosphate kinase. Catalyzes the phosphorylation of phytic acid (InsP6) to the symmetric InsP7 isomer 5-InsP7.	Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11)
AT4G34460.4	protein_coding	GTP binding protein beta 1	Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER.  Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase.  It seems to be involved in the calcium-mediated response to extracellular ATP.	GTP binding protein beta 1;(source:Araport11)
AT4G35030.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G35070.2	protein_coding	SBP (S-ribonuclease binding protein) family protein		SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT4G35110.3	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G35655.1	protein_coding	RPM1-interacting protein 4 (RIN4) family protein		RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT4G35770.2	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein	Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT4G35770.3	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein	Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT4G35783.1	protein_coding	ROTUNDIFOLIA like 6		ROTUNDIFOLIA like 6;(source:Araport11)
AT4G35860.2	protein_coding	GTP-binding 2	GTP-binding protein ATGB2	GTP-binding 2;(source:Araport11)
AT4G36052.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G36050;(source:Araport11)
AT4G36210.3	protein_coding	Protein of unknown function (DUF726)		transmembrane/coiled-coil protein (DUF726);(source:Araport11)
AT4G36640.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT4G36648.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G36650.2	protein_coding	plant-specific TFIIB-related protein	Encodes a protein with similarity to the general transcription factor TFIIB. pBRP binds rDNA sequences in vitro. pBRP has been localized to the outer face of the plastid membrane with GFP fusion however, under conditions of proteosome inhibition it is found in the nucleus.	plant-specific TFIIB-related protein;(source:Araport11)
AT4G36945.1	protein_coding	PLC-like phosphodiesterases superfamily protein		PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT4G36980.2	protein_coding			CLK4-associating serine/arginine-rich protein;(source:Araport11)
AT4G37070.4	protein_coding	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein	Patatin-related phospholipase A. Expressed strongly  and exclusively in roots. AtplaIVA-null mutants have reduced lateral root development. Phosphorylation by calcium-dependent protein kinases in vitro  enhances its activity.	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein;(source:Araport11)
AT4G37225.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G37230;(source:Araport11)
AT4G37432.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G37430;(source:Araport11)
AT4G37440.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G37530.2	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT4G37608.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G37830.2	protein_coding	cytochrome c oxidase-related		cytochrome c oxidase-like protein;(source:Araport11)
AT4G37895.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G37890;(source:Araport11)
AT4G38130.2	protein_coding	histone deacetylase 1	Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7.  Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. HDA19 acts in a WOX5 mediated pathway to maintain columella stem cell fate by repressing CDF4.	histone deacetylase 1;(source:Araport11)
AT4G38545.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G38530 and AT4G38540;(source:Araport11)
AT4G38545.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G38530 and AT4G38540;(source:Araport11)
AT4G38560.2	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G38670.2	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT4G39140.5	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G39680.2	protein_coding	SAP domain-containing protein		SAP domain-containing protein;(source:Araport11)
AT4G40030.2	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT4G40030.3	protein_coding	Histone superfamily protein		Histone superfamily protein;(source:Araport11)
AT4G40085.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G40080;(source:Araport11)
AT4G40085.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G40080;(source:Araport11)
AT5G01175.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G01180;(source:Araport11)
AT5G01215.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G01210;(source:Araport11)
AT5G01215.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G01210;(source:Araport11)
AT5G01445.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G01470.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G01595.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G01600;(source:Araport11)
AT5G02200.2	protein_coding	far-red-elongated hypocotyl1-like	Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.	far-red-elongated hypocotyl1-like protein;(source:Araport11)
AT5G03190.2	protein_coding	conserved peptide upstream open reading frame 47		peptide upstream protein;(source:Araport11)
AT5G03345.2	protein_coding			membrane magnesium transporter-like protein;(source:Araport11)
AT5G03495.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G03500.2	protein_coding	Mediator complex, subunit Med7	Encodes together with its paralog MED7A a subunit of the middle module of the transcriptional co-regulator Mediator complex. Regulates genes required for normal development of etiolated seedlings.	Mediator complex, subunit Med7;(source:Araport11)
AT5G03668.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G03670;(source:Araport11)
AT5G04320.2	protein_coding	Shugoshin C terminus	Encodes a protein that protects meiotic centromere cohesion.	Shugoshin C terminus;(source:Araport11)
AT5G04560.2	protein_coding	HhH-GPD base excision DNA repair family protein	Encodes a DNA glycosylase DEMETER (DME).  Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene.  DME can excise 5-methylcytosine in vitro and when expressed in E. coli.  DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele.	HhH-GPD base excision DNA repair family protein;(source:Araport11)
AT5G04750.2	protein_coding	F1F0-ATPase inhibitor protein, putative		F1F0-ATPase inhibitor protein;(source:Araport11)
AT5G04980.2	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT5G05025.1	pseudogene		Encodes a Pollen Ole e I allergen and extensin family protein [pseudogene]	pseudogene of Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G05080.2	protein_coding	ubiquitin-conjugating enzyme 22		ubiquitin-conjugating enzyme 22;(source:Araport11)
AT5G05210.2	protein_coding	Surfeit locus protein 6		Surfeit locus protein 6;(source:Araport11)
AT5G05330.2	protein_coding	HMG-box (high mobility group) DNA-binding family protein	Encodes a protein with a putative HMG-box domain.  The high-mobility group (HMG) proteins are chromatin-associated proteins that act as architectural factors in various nucleoprotein structures, which regulate DNA-dependent processes such as transcription and recombination.  Expression of this gene was not detected according to Grasser et al. (J. Mol. Biol. 2006:358, 654-664).	HMG-box (high mobility group) DNA-binding family protein;(source:Araport11)
AT5G05365.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G05435.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G05430;(source:Araport11)
AT5G05598.1	protein_coding		Encodes a Defensin-like (DEFL) family protein	transmembrane protein;(source:Araport11)
AT5G05690.3	protein_coding	Cytochrome P450 superfamily protein	Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis.  Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in <i>bri1</i> mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.	Cytochrome P450 superfamily protein;(source:Araport11)
AT5G05800.2	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT5G06100.3	protein_coding	myb domain protein 33	Encodes a member of the myb family of transcription factors (MYB33), contains Pfam profile: PF00249 myb DNA-binding domain. Double mutants with MYB65 are male sterile- anthers are small, pollen development is defective. Spatial expression appears to be under the control of miR159, contains a target site for this micro RNA. A highly conserved RNA secondary structure abuts the miR159 binding site which facilitates its regulation by miR159. When the target site is mutated, expression is detected in leaves, roots, anther filament, pistil. The expression of a translational fusion is specific to anther locules in contrast to constructs lacking the miR159 target site. Phenotype is conditional and can be restored by lower temperature or higher light intensity.	myb domain protein 33;(source:Araport11)
AT5G06839.2	protein_coding	bZIP transcription factor family protein		bZIP transcription factor family protein;(source:Araport11)
AT5G06865.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G06860;(source:Araport11)
AT5G06865.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G06860;(source:Araport11)
AT5G06950.4	protein_coding	bZIP transcription factor family protein	Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment.	bZIP transcription factor family protein;(source:Araport11)
AT5G07360.2	protein_coding	Amidase family protein		Amidase family protein;(source:Araport11)
AT5G07380.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G07510.3	protein_coding	glycine-rich protein 14	encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers.	glycine-rich protein 14;(source:Araport11)
AT5G07550.2	protein_coding	glycine-rich protein 19	member of Oleosin-like protein family	glycine-rich protein 19;(source:Araport11)
AT5G07930.2	protein_coding	MEI2 C-terminal RRM only like 2	A member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.	MEI2 C-terminal RRM only like 2;(source:Araport11)
AT5G08190.2	protein_coding	nuclear factor Y, subunit B12		nuclear factor Y, subunit B12;(source:Araport11)
AT5G08560.2	protein_coding	transducin family protein / WD-40 repeat family protein	WRDR26 is a WD-40 repeat containing protein initially identified as an interacting partner RanBPM. Its expression is induced by abiotic stress as well as various plant growth regulators including IAA, ABA and ethylene. Role as a novel modulator of redox homeostatis, responding to developmental and stress signals to regulate leaf senescence.	transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G08750.2	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G08750.3	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G08760.1	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT5G09230.7	protein_coding	sirtuin 2	Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).	sirtuin 2;(source:Araport11)
AT5G09330.2	protein_coding	NAC domain containing protein 82		NAC domain containing protein 82;(source:Araport11)
AT5G09330.3	protein_coding	NAC domain containing protein 82		NAC domain containing protein 82;(source:Araport11)
AT5G09445.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G09510.2	protein_coding	Ribosomal protein S19 family protein		Ribosomal protein S19 family protein;(source:Araport11)
AT5G09600.2	protein_coding	succinate dehydrogenase 3-1	Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.	succinate dehydrogenase 3-1;(source:Araport11)
AT5G09660.3	protein_coding	peroxisomal NAD-malate dehydrogenase 2	encodes a microbody NAD-dependent malate dehydrogenase  encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.	peroxisomal NAD-malate dehydrogenase 2;(source:Araport11)
AT5G09690.4	protein_coding	magnesium transporter 7	Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT5G09740.2	protein_coding	histone acetyltransferase of the MYST family 2	Encodes an enzyme with histone acetyltransferase activity. HAM2 primarily acetylate histone H4, but also  display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4  reduces radioactive acetylation by either HAM2.	histone acetyltransferase of the MYST family 2;(source:Araport11)
AT5G09790.2	protein_coding	ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5	Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain.  ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against  this gene has reduced agrobacterium-mediated tumor formation.	TRITHORAX-RELATED PROTEIN 5;(source:Araport11)
AT5G09805.1	protein_coding	inflorescence deficient in abscission (IDA)-like 3	Similar to Inflorescence deficient in abscission (IDA). Involved in floral organ abscission.	inflorescence deficient in abscission (IDA)-like 3;(source:Araport11)
AT5G09978.1	protein_coding	elicitor peptide 7 precursor		elicitor peptide 7 precursor;(source:Araport11)
AT5G10020.2	protein_coding	Leucine-rich receptor-like protein kinase family protein		Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT5G10140.2	protein_coding	K-box region and MADS-box transcription factor family protein 	MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin.  Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3’ to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G10278.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	None;(source:Araport11)
AT5G10278.2	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	None;(source:Araport11)
AT5G10330.3	protein_coding	histidinol phosphate aminotransferase 1	Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.	histidinol phosphate aminotransferase 1;(source:Araport11)
AT5G10470.2	protein_coding	kinesin like protein for actin based chloroplast movement 1	Kinesin that binds cyclin-dependent kinase CDKA;1 as homodimer or as heterodimer with KCA2. Demarcates the division site in plant cells.	kinesin like protein for actin based chloroplast movement 1;(source:Araport11)
AT5G10480.2	protein_coding	Protein-tyrosine phosphatase-like, PTPLA	Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early  mitosis and inhibited Arabidopsis seedling growth. Localized in  the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids).	Protein-tyrosine phosphatase-like, PTPLA;(source:Araport11)
AT5G10490.2	protein_coding	MSCS-like 2	A member of MscS-like gene family, structurally very similar to MSL3, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL2-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE.	MSCS-like 2;(source:Araport11)
AT5G10780.2	protein_coding			ER membrane protein complex subunit-like protein;(source:Araport11)
AT5G11360.2	protein_coding	Interleukin-1 receptor-associated kinase 4 protein		Interleukin-1 receptor-associated kinase 4 protein;(source:Araport11)
AT5G11380.2	protein_coding	1-deoxy-D-xylulose 5-phosphate synthase 3	Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.	1-deoxy-D-xylulose 5-phosphate synthase 3;(source:Araport11)
AT5G11630.2	protein_coding		The mutant is insensitive to oxylipin 9-HOT treatment. Involved in plant defense.	hypothetical protein;(source:Araport11)
AT5G11860.4	protein_coding	SCP1-like small phosphatase 5	Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).	SCP1-like small phosphatase 5;(source:Araport11)
AT5G11910.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G11920.2	protein_coding	6-&1-fructan exohydrolase	Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.	6-%261-fructan exohydrolase;(source:Araport11)
AT5G12170.2	protein_coding	CRT (chloroquine-resistance transporter)-like transporter 3	Encodes one of the CRT-Like transporters (CLT1/AT5G19380, CLT2/AT4G24460, CLT3/AT5G12170). Required for glutathione homeostasis and stress responses.  Mutants lacking these transporters are heavy metal-sensitive, glutathione(GSH)-deficient, and hypersensitive to Phytophthora infection. The mRNA is cell-to-cell mobile.	CRT (chloroquine-resistance transporter)-like transporter 3;(source:Araport11)
AT5G12480.2	protein_coding	calmodulin-domain protein kinase 7	calmodulin-domain protein kinase CDPK isoform 7 (CPK7)	calmodulin-domain protein kinase 7;(source:Araport11)
AT5G13290.3	protein_coding	Protein kinase superfamily protein	Encodes a protein with predicted Ser/Thr kinase activity and membrane localization that is involved in the CLV3 signaling pathway that represses WUS expression in the meristem. Loss of function of CRN can suppress the phenotype caused by overexpression of CLV3. SOL2 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol2 partially suppresses the short root phenotype caused  by CLE19 overexpression. Mutant flowers have extra carpels.	Protein kinase superfamily protein;(source:Araport11)
AT5G13630.2	protein_coding	magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)	Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction.	magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH);(source:Araport11)
AT5G13710.2	protein_coding	sterol methyltransferase 1	SMT1 controls the level of cholesterol in plants	sterol methyltransferase 1;(source:Araport11)
AT5G13950.2	protein_coding			nuclear factor kappa-B-binding protein;(source:Araport11)
AT5G14060.2	protein_coding	Aspartate kinase family protein	lysine-sensitive aspartate kinase	Aspartate kinase family protein;(source:Araport11)
AT5G14345.1	protein_coding	early nodulin-like protein 21	Encodes a Uclacyanin/Basic blue family protein	early nodulin-like protein 21;(source:Araport11)
AT5G14545.1	miRNA_primary_transcript	MIR398B; miRNA	Encodes a microRNA that targets both CSD and CytC oxidase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGUGUUCUCAGGUCACCCCUG. Down-regulated by biotic and abiotic stress.	microRNA ath-MIR398b precursor;(source:Araport11)
AT5G14565.1	miRNA_primary_transcript	MIR398C; miRNA	Encodes a microRNA that targets both CSD and CytC oxidase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGUGUUCUCAGGUCACCCCUG. Down-regulated by biotic and abiotic stress.	microRNA ath-MIR398c precursor;(source:Araport11)
AT5G14740.5	protein_coding	carbonic anhydrase 2	Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm.  Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.	carbonic anhydrase 2;(source:Araport11)
AT5G14800.2	protein_coding	pyrroline-5- carboxylate (P5C) reductase	Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.	pyrroline-5- carboxylate (P5C) reductase;(source:Araport11)
AT5G14930.3	protein_coding	senescence-associated gene 101	encodes an acyl hydrolase involved in senescence .	senescence-associated gene 101;(source:Araport11)
AT5G14995.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G15230.2	protein_coding	GAST1 protein homolog 4	Encodes gibberellin-regulated protein GASA4. Promotes GA responses and exhibits redox activity.	GAST1 protein homolog 4;(source:Araport11)
AT5G15265.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G15310.2	protein_coding	myb domain protein 16	Member of the R2R3 factor gene family.	myb domain protein 16;(source:Araport11)
AT5G15320.2	protein_coding			ATP synthase E chain;(source:Araport11)
AT5G15730.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G16023.1	protein_coding	ROTUNDIFOLIA like 18	Encodes a plant peptide that could be involved in the coordination of socket cell development in wild-type plants.	ROTUNDIFOLIA like 18;(source:Araport11)
AT5G16140.2	protein_coding	Peptidyl-tRNA hydrolase family protein		Peptidyl-tRNA hydrolase family protein;(source:Araport11)
AT5G16235.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G16230;(source:Araport11)
AT5G16660.2	protein_coding			Low-density receptor-like protein;(source:Araport11)
AT5G16840.2	protein_coding	binding partner of acd11 1	Binds to ACD11 and fungal elicitor RxLR207. Regulates ROS mediated defense response.	binding partner of acd11 1;(source:Araport11)
AT5G16840.3	protein_coding	binding partner of acd11 1	Binds to ACD11 and fungal elicitor RxLR207. Regulates ROS mediated defense response.	binding partner of acd11 1;(source:Araport11)
AT5G17165.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G17170.2	protein_coding	rubredoxin family protein		rubredoxin family protein;(source:Araport11)
AT5G17920.2	protein_coding	Cobalamin-independent synthase family protein	Encodes a cytosolic cobalamin-independent methionine synthase, involved in methionine regeneration via the activated methyl cycle (SAM cycle). The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. The mRNA is cell-to-cell mobile.	Cobalamin-independent synthase family protein;(source:Araport11)
AT5G18255.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G18260;(source:Araport11)
AT5G18255.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G18260;(source:Araport11)
AT5G18255.3	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G18260;(source:Araport11)
AT5G18380.2	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT5G18400.3	protein_coding	Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis		Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesi;(source:Araport11)
AT5G18440.2	protein_coding		Encodes NUFIP that directs assembly of C/D snoRNP (small nucleolar ribonucleoprotein).	GATA zinc finger protein;(source:Araport11)
AT5G19350.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G19530.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes a spermine synthase.  Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions.   This mechanism may be mediated by polar auxin transport.  Though ACL5 has been shown to function as a spermine  synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G20090.2	protein_coding	Uncharacterised protein family (UPF0041)	MPC1 negatively regulates ABA enhanced slow anion channel function during stomatal closure.	Uncharacterized protein family (UPF0041);(source:Araport11)
AT5G20165.2	protein_coding			kish-A-like protein;(source:Araport11)
AT5G20220.2	protein_coding	zinc knuckle (CCHC-type) family protein		zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT5G20225.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G20220;(source:Araport11)
AT5G20680.2	protein_coding	TRICHOME BIREFRINGENCE-LIKE 16	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 16;(source:Araport11)
AT5G20920.3	protein_coding	eukaryotic translation initiation factor 2 beta subunit	protein synthesis initiation factor eIF2 beta	eukaryotic translation initiation factor 2 beta subunit;(source:Araport11)
AT5G20980.2	protein_coding	methionine synthase 3	encodes a plastidic methionine synthase, involved in methionine de novo synthesis in the chloroplast	methionine synthase 3;(source:Araport11)
AT5G22440.2	protein_coding	Ribosomal protein L1p/L10e family		Ribosomal protein L1p/L10e family;(source:Araport11)
AT5G22608.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G22660.2	protein_coding	FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein		FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G23155.1	other_rna	other RNA		None;(source:Araport11)
AT5G23210.3	protein_coding	serine carboxypeptidase-like 34		serine carboxypeptidase-like 34;(source:Araport11)
AT5G23210.4	protein_coding	serine carboxypeptidase-like 34		serine carboxypeptidase-like 34;(source:Araport11)
AT5G23540.2	protein_coding	Mov34/MPN/PAD-1 family protein		Mov34/MPN/PAD-1 family protein;(source:Araport11)
AT5G24205.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G24206.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G24352.1	protein_coding	Serine/threonine-protein kinase WNK (With No Lysine)-related		Serine/threonine-protein kinase WNK (With No Lysine)-like protein;(source:Araport11)
AT5G24557.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT5G24735.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT5G24760.3	protein_coding	GroES-like zinc-binding dehydrogenase family protein		GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G24825.1	miRNA_primary_transcript	MIR169B; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CAGCCAAGGAUGACUUGCCGG	microRNA ath-MIR169b precursor;(source:Araport11)
AT5G25475.3	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G25560.2	protein_coding	CHY-type/CTCHY-type/RING-type Zinc finger protein		CHY-type/CTCHY-type/RING-type Zinc finger protein;(source:Araport11)
AT5G25770.3	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G26015.1	pseudogene		Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]	pseudogene of Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G26280.2	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT5G26673.1	protein_coding	Putative membrane lipoprotein	Encodes a Plant thionin family protein	Putative membrane lipoprotein;(source:Araport11)
AT5G26740.3	protein_coding	Protein of unknown function (DUF300)		organic solute transporter ostalpha protein (DUF300);(source:Araport11)
AT5G27395.1	protein_coding	Mitochondrial inner membrane translocase complex, subunit Tim44-related protein		Mitochondrial inner membrane translocase complex, subunit Tim44-related protein;(source:Araport11)
AT5G27830.3	protein_coding			folate receptor family protein;(source:Araport11)
AT5G27927.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family	transposable_element_gene;(source:Araport11)
AT5G28020.6	protein_coding	cysteine synthase D2	Encodes cysteine synthase CysD2.	cysteine synthase D2;(source:Araport11)
AT5G28262.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G28626.1	transposable_element_gene	transposable element gene	Member of Sadhu non-coding retrotransposon family The mRNA is cell-to-cell mobile.	transposable_element_gene;(source:Araport11)
AT5G28824.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G29000.3	protein_coding	Homeodomain-like superfamily protein	MYB-CC family member. PHL1 acts redundantly with PHR1 to regulate responses to Pi starvation.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G30490.2	protein_coding			craniofacial development-like protein;(source:Araport11)
AT5G33370.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates. Mutants are defective in cuticle formation with reduced sepal cuticle ridge formation.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G34828.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT5G34869.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G34871.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G34882.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT5G34903.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT5G34908.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative (DUF784);(source:Araport11)
AT5G35100.2	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT5G35375.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G35405.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis family protein (DUF784);(source:Araport11)
AT5G35407.1	miRNA_primary_transcript	MIR396B; miRNA	Encodes a microRNA that targets several GRF family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUCCACAGCUUUCUUGAACUU. Expression increased with leaf development, antagonizing with expression of GRFs. Transcript accumulates in the distal zone of young developing seeds, restricing the expression of GRF2 to the proximal part. miR396 attenuates cell  proliferation in developing leaves through the repression of GRF activity and a decrease in the expression of cell cycle genes.	microRNA ath-MIR396b precursor;(source:Araport11)
AT5G35630.3	protein_coding	glutamine synthetase 2	chloroplastic glutamine synthetase The mRNA is cell-to-cell mobile.	glutamine synthetase 2;(source:Araport11)
AT5G35698.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT5G36002.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G36001.;(source:Araport11)
AT5G36002.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G36001.;(source:Araport11)
AT5G36310.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36320.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36330.1	protein_coding	ECA1 gametogenesis related family protein		ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36340.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36350.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36360.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36370.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36380.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36390.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36400.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36410.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36420.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36430.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36440.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36450.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36460.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36470.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36480.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36490.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36500.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36510.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36520.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36530.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36540.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36550.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36657.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36658.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36659.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36661.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36662.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36722.1	protein_coding			U3 small nucleolar RNA-associated protein;(source:Araport11)
AT5G36736.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT5G36738.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36739.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G36805.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT5G37020.2	protein_coding	auxin response factor 8	Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Expression of ARF8 is controlled by miR167.	auxin response factor 8;(source:Araport11)
AT5G37072.1	pseudogene			pseudogene of Ribosomal protein S4 (RPS4A) family protein;(source:Araport11)
AT5G37380.3	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G37485.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G37530.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G37660.2	protein_coding	plasmodesmata-located protein 7	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	plasmodesmata-located protein 7;(source:Araport11)
AT5G37720.2	protein_coding		Encodes a member of a family of proteins involved in export of RNAs from the nucleus and transcriptional coactivation.	ALWAYS EARLY 4;(source:Araport11)
AT5G37850.2	protein_coding	pfkB-like carbohydrate kinase family protein	Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT5G38005.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G38197.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G38378.1	protein_coding	Plant thionin family protein	Thionin-like gene involved in resistance against the beet cyst nematode (Heterodera schachtii).	Plant thionin family protein;(source:Araport11)
AT5G38470.2	protein_coding	Rad23 UV excision repair protein family	Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.	Rad23 UV excision repair protein family;(source:Araport11)
AT5G38510.2	protein_coding	Rhomboid-related intramembrane serine protease family protein		Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT5G38520.2	protein_coding	alpha/beta-Hydrolases superfamily protein	CLD1 is involved in steady-state chlorophyll turnover; CLD1 dephytylates chlorophyll a, chlorophyll b, and pheophytin a in vitro; CLD1 and CHLG form a salvage cycle in recycling chlorophyll. Suppression of CLD1 expression results in reduced tolerance to moderately high temperature.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G39635.1	miRNA_primary_transcript	MIR169C; miRNA	Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CAGCCAAGGAUGACUUGCCGG	microRNA ath-MIR169c precursor;(source:Araport11)
AT5G39645.1	protein_coding	Defensin-like (DEFL) family protein	Encodes a Defensin-like (DEFL) family protein	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G40348.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G40350;(source:Araport11)
AT5G40348.2	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G40350;(source:Araport11)
AT5G40500.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G40520.2	protein_coding			DNA double-strand break repair protein;(source:Araport11)
AT5G40570.2	protein_coding	Surfeit locus protein 2 (SURF2)		Surfeit locus protein 2 (SURF2);(source:Araport11)
AT5G41060.2	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT5G41520.2	protein_coding	RNA binding Plectin/S10 domain-containing protein	The gene belongs  to  the  three-member  Arabidopsis  gene  family  encoding  the  eukaryote-specific protein S10e of the small cytoplasmic ribosomal subunit.	RNA binding Plectin/S10 domain-containing protein;(source:Araport11)
AT5G41612.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G41610;(source:Araport11)
AT5G42420.2	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT5G42520.2	protein_coding	basic pentacysteine 6	Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.	basic pentacysteine 6;(source:Araport11)
AT5G42520.3	protein_coding	basic pentacysteine 6	Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.	basic pentacysteine 6;(source:Araport11)
AT5G42560.2	protein_coding	Abscisic acid-responsive (TB2/DP1, HVA22) family protein		Abscisic acid-responsive (TB2/DP1, HVA22) family protein;(source:Araport11)
AT5G42567.1	protein_coding	Protein of unknown function (DUF784)	Encodes a ECA1 gametogenesis related family protein	inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784);(source:Araport11)
AT5G42690.2	protein_coding	Protein of unknown function, DUF547		transcription factor, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G42690.3	protein_coding	Protein of unknown function, DUF547		transcription factor, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G42895.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G43240.2	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT5G43280.2	protein_coding	delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1	Encodes the peroxisomal delta 3,5-delta2,4-dienoyl-CoA isomerase, a enzyme involved in degradation of unsaturated fatty acids. Gene expression is induced upon seed germination.	delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1;(source:Araport11)
AT5G43403.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G43430.3	protein_coding	electron transfer flavoprotein beta	Encodes the electron transfer flavoprotein ETF beta, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF alpha is At1g50940) in Arabidopsis.  Mutations of the ETF beta gene result in accelerated senescence and early death compared to wild-type during extended darkness.  Also involved in the catabolism of leucine and chlorophyll degradation pathway activated during darkness-induced carbohydrate deprivation.	electron transfer flavoprotein beta;(source:Araport11)
AT5G43440.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to ACC oxidase	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G43510.2	protein_coding	Putative membrane lipoprotein	Encodes a cysteine-rich peptide that acts as a pollen tube attractant guiding pollen tubes to the ovular micropyle.  It is expressed in the synergid cell and appears to be secreted toward the funicular surface through the micropyle.	Putative membrane lipoprotein;(source:Araport11)
AT5G43725.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G43725.2	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G43990.3	protein_coding	SET-domain containing protein lysine methyltransferase family protein	Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT5G43990.4	protein_coding	SET-domain containing protein lysine methyltransferase family protein	Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT5G44110.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a member of the NAP subfamily of ABC transporters whose expression pattern is regulated by light and sucrose.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G44200.2	protein_coding	CAP-binding protein 20	Encodes a nuclear cap-binding protein that forms a heterodimeric complex with ABH1 (ATCBP80) and is likely to participate in RNA metabolism. Its mRNA is ubiquitously expressed.Loss of function mutations suggest a role in processing of pri-miRNA and mRNA splicing.	CAP-binding protein 20;(source:Araport11)
AT5G44250.2	protein_coding	Protein of unknown function DUF829, transmembrane 53		peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53);(source:Araport11)
AT5G44265.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein.  Predicted to be a member of PR-14 pathogenesis-related protein family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G44290.4	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G44495.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G44555.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis related family protein;(source:Araport11)
AT5G44562.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G44560;(source:Araport11)
AT5G44568.1	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT5G44572.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G44574.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G44578.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G44582.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G45260.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class)	Confers resistance to Ralstonia solanacearum. Similar to NBLS-TIR resistance genes,and also contains similarity to transcription factors. Interacts with pathogen effector protein AvrPop2.	Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G45350.2	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT5G45410.3	protein_coding		Plastid localized protein of unknown function. Mutants are more susceptible to P. syringae and produce less callose upon infection.	zinc finger B-box protein;(source:Araport11)
AT5G45490.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G45510.2	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G46110.4	protein_coding	Glucose-6-phosphate/phosphate translocator-related	Encodes a chloroplast triose phosphate / 3-phosphoglycerate translocator that transports triose phosphates derived from the Calvin cycle in the stroma to the cytosol for use in sucrose synthesis and other biosynthetic processes. A tpt mutant has altered acclimation responses. The mRNA is cell-to-cell mobile.	Glucose-6-phosphate/phosphate translocator-like protein;(source:Araport11)
AT5G46250.3	protein_coding	RNA-binding protein		RNA-binding protein;(source:Araport11)
AT5G46840.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G47210.2	protein_coding	Hyaluronan / mRNA binding family		Hyaluronan / mRNA binding family;(source:Araport11)
AT5G47210.3	protein_coding	Hyaluronan / mRNA binding family		Hyaluronan / mRNA binding family;(source:Araport11)
AT5G47430.2	protein_coding	DWNN domain, a CCHC-type zinc finger		DWNN domain, a CCHC-type zinc finger;(source:Araport11)
AT5G47630.2	protein_coding	mitochondrial acyl carrier protein 3	Encodes a member of the mitochondrial acyl carrier protein (ACP) family.  Its role is currently obscure as it is weakly expressed and has not yet been identified by mitochondrial proteome analysis.	mitochondrial acyl carrier protein 3;(source:Araport11)
AT5G47670.2	protein_coding	nuclear factor Y, subunit B6	Encodes LEC1-Like (L1L), closely related to LEC1 (Leafy Cotyledon1).  Functions as a regulator of embryo development.	nuclear factor Y, subunit B6;(source:Araport11)
AT5G47700.2	protein_coding	60S acidic ribosomal protein family	Co-orthologous gene of large ribosomal subunit protein RPP1.	60S acidic ribosomal protein family;(source:Araport11)
AT5G47710.2	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G47730.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G47970.2	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT5G48000.5	protein_coding	cytochrome P450, family 708, subfamily A, polypeptide 2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	cytochrome P450, family 708, subfamily A, polypeptide 2;(source:Araport11)
AT5G48010.2	protein_coding	thalianol synthase 1	Encodes an oxidosqualene cyclase involved in the  biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.	thalianol synthase 1;(source:Araport11)
AT5G48220.2	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT5G48330.2	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT5G48370.2	protein_coding	Thioesterase/thiol ester dehydrase-isomerase superfamily protein		Thioesterase/thiol ester dehydrase-isomerase superfamily protein;(source:Araport11)
AT5G48760.2	protein_coding	Ribosomal protein L13 family protein		Ribosomal protein L13 family protein;(source:Araport11)
AT5G49152.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G49150;(source:Araport11)
AT5G49680.2	protein_coding	Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain	Conserved among eukaryotes, similar to Arabidopsis SABRE. The phenotype of the kip/sab double mutant suggests related functions for both genes, however, the KIP protein is mostly required for tip-growth. Predicted to be targeted to the secretory pathway. mRNA was detected in all organs, with most abundance in pollen and roots.	SABRE-like protein;(source:Araport11)
AT5G49940.2	protein_coding	NIFU-like protein 2	Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.	NIFU-like protein 2;(source:Araport11)
AT5G50240.2	protein_coding	protein-l-isoaspartate methyltransferase 2	L-isoaspartyl methyltransferase 2 (PIMT2)gene,  alternatively spliced.	protein-l-isoaspartate methyltransferase 2;(source:Araport11)
AT5G50345.1	protein_coding	Maternally expressed gene (MEG) family protein	Encodes a Maternally expressed gene (MEG) family protein	maternally expressed family protein;(source:Araport11)
AT5G50717.1	miRNA_primary_transcript	MIR405B; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:ATGAGTTGGGTCTAACCCATAACT	microRNA ath-MIR405b precursor;(source:Araport11)
AT5G50740.2	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G51170.2	protein_coding			U6 snRNA phosphodiesterase-like protein;(source:Araport11)
AT5G51620.3	protein_coding	Uncharacterised protein family (UPF0172)		Uncharacterized protein family (UPF0172);(source:Araport11)
AT5G51860.2	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a MADS-box transcription factor involved in floral transition.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G52547.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G52882.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G53120.4	protein_coding	spermidine synthase 3	encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.	spermidine synthase 3;(source:Araport11)
AT5G53120.5	protein_coding	spermidine synthase 3	encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.	spermidine synthase 3;(source:Araport11)
AT5G53180.2	protein_coding	polypyrimidine tract-binding protein 2	Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	polypyrimidine tract-binding protein 2;(source:Araport11)
AT5G53486.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G53620.3	protein_coding			RNA polymerase II degradation factor;(source:Araport11)
AT5G53742.1	protein_coding	Protein of unknown function (DUF1278)	Encodes a ECA1 gametogenesis related family protein	egg cell-secreted-like protein (DUF1278);(source:Araport11)
AT5G54130.2	protein_coding	Calcium-binding endonuclease/exonuclease/phosphatase family		Calcium-binding endonuclease/exonuclease/phosphatase family;(source:Araport11)
AT5G54280.2	protein_coding	myosin 2	Type VII myosin gene	myosin 2;(source:Araport11)
AT5G55250.2	protein_coding	IAA carboxylmethyltransferase 1	Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members  catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D. SABATH methyltransferase.	IAA carboxylmethyltransferase 1;(source:Araport11)
AT5G55835.1	miRNA_primary_transcript	MIR156H; miRNA	Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAAAGAGAGCAC	microRNA ath-MIR156h precursor;(source:Araport11)
AT5G56452.1	protein_coding	FBD-like domain family protein		FBD-like domain family protein;(source:Araport11)
AT5G56710.2	protein_coding	Ribosomal protein L31e family protein		Ribosomal protein L31e family protein;(source:Araport11)
AT5G57300.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G57567.1	protein_coding			GCK domain protein;(source:Araport11)
AT5G57670.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G57700.3	protein_coding	BNR/Asp-box repeat family protein		BNR/Asp-box repeat family protein;(source:Araport11)
AT5G58003.1	protein_coding	C-terminal domain phosphatase-like 4	Encodes a polypeptide that contains FCPH and BRCT domains. RNAi suppression mutant lines were generated, which displayed a range of phenotypic abnormalities, including: incomplete to no cotyledon expansion, slow growth, epinastic leaves or small inflorescences.	C-terminal domain phosphatase-like 4;(source:Araport11)
AT5G58210.4	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G58412.1	protein_coding	Putative membrane lipoprotein	Encodes a Plant thionin family protein	Putative membrane lipoprotein;(source:Araport11)
AT5G58465.1	miRNA_primary_transcript	MIR390B; miRNA	Encodes a microRNA that targets the TAS3 family of tasiRNA-generating transcripts.  Cleavage of TAS3 transcripts by miR390 initiates processing of these transcripts in a 21-nucleotide register.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AAGCUCAGGAGGGAUAGCGCC	microRNA ath-MIR390b precursor;(source:Araport11)
AT5G59010.2	protein_coding	Protein kinase protein with tetratricopeptide repeat domain		kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT5G59290.2	protein_coding	UDP-glucuronic acid decarboxylase 3	Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate  several cell wall biosynthetic enzymes.	UDP-glucuronic acid decarboxylase 3;(source:Araport11)
AT5G59370.2	protein_coding	actin 4	Encodes one of eight Arabidopsis actins.  ACT4 belongs to the reproductive actin subclass which is predominantly expressed in developing and reproductive tissues, such as pollen, pollen tubes, ovules, and developing seeds.  Expression of the ACT4/GUS fusion was restricted to young vascular tissues, tapetum, and developing and mature pollen.	actin 4;(source:Araport11)
AT5G59430.3	protein_coding	telomeric repeat binding protein 1	Encodes a telomeric repeat binding protein with a DNA binding domain at its C terminus. The DNA binding domain has a preference for GGTTTAG sequences and at least five of these repeats are required for recognition by a nearly full-length TRP1 protein.	telomeric repeat binding protein 1;(source:Araport11)
AT5G59430.4	protein_coding	telomeric repeat binding protein 1	Encodes a telomeric repeat binding protein with a DNA binding domain at its C terminus. The DNA binding domain has a preference for GGTTTAG sequences and at least five of these repeats are required for recognition by a nearly full-length TRP1 protein.	telomeric repeat binding protein 1;(source:Araport11)
AT5G59440.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of  263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G59505.1	miRNA_primary_transcript	MIR172E; miRNA	Encodes a microRNA that targets several genes containing AP2 domains including AP2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: GAAUCUUGAUGAUGCUGCAU. Pri-mRNA coordinates for MIR172e (converted to TAIR10 based on PMID19304749): Chr5: 23988070-23988886 (forward), length: 817 bp; exon coordinates: exon 1: 23988070 to 23988886; mature miRNA and miRNA* are located on exon 1.	microRNA ath-MIR172e precursor;(source:Araport11)
AT5G59732.1	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT5G59730. The RNA is cell-to-cell mobile.	Natural antisense transcript overlaps with AT5G59730;(source:Araport11)
AT5G60022.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G60020;(source:Araport11)
AT5G60300.3	protein_coding	Concanavalin A-like lectin protein kinase family protein	Encodes a legume-type lectin receptor kinase that is structurally distinct from the mammalian extracellular ATP receptors and acts as an extracellular ATP receptor in Arabidopsis. Extracellular ATP acts as a damage-associated molecular pattern in plants, and its signaling through P2K1 is important for mounting an effective defense response against various pathogenic microorganisms. It also plays a role in cell wall-plasma membrane adhesion.	Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G60360.3	protein_coding	aleurain-like protease	Encodes a senescence-associated thiol protease. The mRNA is cell-to-cell mobile.	aleurain-like protease;(source:Araport11)
AT5G60408.1	miRNA_primary_transcript	MIR391; miRNA	Encodes a microRNA of the miR390 family with unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUCGCAGGAGAGAUAGCGCCA	microRNA ath-MIR391 precursor;(source:Araport11)
AT5G60870.3	protein_coding	Regulator of chromosome condensation (RCC1) family protein	Encodes a mitochondrial protein RUG3 that is required for accumulation of mitochondrial respiratory chain complex I. RUG3 is related to human REGULATOR OF CHROMOSOME CONDENSATION 1 (RCC1) and Arabidopsis UV-B RESISTANCE 8 (UVR8).	Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT5G60910.2	protein_coding	AGAMOUS-like 8	MADS box gene negatively regulated  by APETALA1	AGAMOUS-like 8;(source:Araport11)
AT5G60945.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G60964.1	protein_coding	ECA1 gametogenesis related family protein	Encodes a ECA1 gametogenesis related family protein	ECA1 gametogenesis related family protein;(source:Araport11)
AT5G60978.1	pseudogene		Encodes a ECA1 gametogenesis related family protein [pseudogene]	pseudogene of ECA1 gametogenesis related family protein;(source:Araport11)
AT5G61570.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G62065.1	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein. Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G62162.1	miRNA_primary_transcript	MIR399C; miRNA	Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content.  miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCAAAGGAGAGUUGCCCUG	microRNA ath-MIR399c precursor;(source:Araport11)
AT5G62300.2	protein_coding	Ribosomal protein S10p/S20e family protein		Ribosomal protein S10p/S20e family protein;(source:Araport11)
AT5G62848.1	miRNA_primary_transcript	MIR420; miRNA	Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:TAAACTAATCACGGAAATGCA	microRNA ath-MIR420 precursor;(source:Araport11)
AT5G62890.4	protein_coding	Xanthine/uracil permease family protein		Xanthine/uracil permease family protein;(source:Araport11)
AT5G62950.2	protein_coding	RNA polymerase II, Rpb4, core protein		RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT5G63063.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT5G63085.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT5G63087.1	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT5G63195.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G63190;(source:Araport11)
AT5G63225.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein	glycosyl hydrolase family protein 17	Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT5G63440.3	protein_coding	Protein of unknown function (DUF167)	Encodes a single copy protein in Arabidopsis containing a DUF167 domain that is conserved in eukaryotes.  Genetically CSU suppresses mutations in COP1.  In vitro, it interacts with CACTIN and in vivo with CCA1. CSU4 promotes photomorphogenesis via negative regulation of CCA1 and PIF4 expression.	hypothetical protein (DUF167);(source:Araport11)
AT5G63530.2	protein_coding	farnesylated protein 3	Farnesylated protein that binds metals.	farnesylated protein 3;(source:Araport11)
AT5G63770.2	protein_coding	diacylglycerol kinase 2	a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold.	diacylglycerol kinase 2;(source:Araport11)
AT5G64130.3	protein_coding	cAMP-regulated phosphoprotein 19-related protein		cAMP-regulated phosphoprotein 19-related protein;(source:Araport11)
AT5G64170.2	protein_coding	dentin sialophosphoprotein-related	LNK1 is a member of a small family (4 proteins) in Arabidopsis that have some overlap in function. LNK1  functions in the integration of light signaling and circadian clock. It is regulated by  the clock TOC1 complex.Functions as a transcriptional coactivator.	dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G64460.6	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT5G64460.7	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT5G64572.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G64570;(source:Araport11)
AT5G64667.1	protein_coding	inflorescence deficient in abscission (IDA)-like 2	Similar to Inflorescence deficient in abscission (IDA). Involved in floral organ abscission.	inflorescence deficient in abscission (IDA)-like 2;(source:Araport11)
AT5G64960.2	protein_coding	cyclin dependent kinase group C2	Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes.  Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components.	cyclin dependent kinase group C2;(source:Araport11)
AT5G65050.2	protein_coding	AGAMOUS-like 31	Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time.  Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.	AGAMOUS-like 31;(source:Araport11)
AT5G65080.2	protein_coding	K-box region and MADS-box transcription factor family protein 	Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported.	K-box region/MADS-box transcription factor family protein;(source:Araport11)
AT5G65210.6	protein_coding	bZIP transcription factor family protein	Encodes TGA1, a redox-controlled regulator of systemic acquired resistance.  TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.	bZIP transcription factor family protein;(source:Araport11)
AT5G65575.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G65580;(source:Araport11)
AT5G65640.2	protein_coding	beta HLH protein 93	bHLH093/NFL encodes a bHLH transcription factor involved in GA mediated control of flowering time. Mutants are non-flowering in short days and phenotype can be reversed with GA application. Based on the expression of GA biosynthetic genes in the mutant, it likely acts through regulation of GA metabolism. Its expression shows developmental stage and tissue specificity. In short days it is expressed mainly in root tips and SAM, with weak expression in cotyledons throughout development. In LD GUS activity was observed in the hypocotyl and in root tips and SAM throughout the developmental stages.	beta HLH protein 93;(source:Araport11)
AT5G65720.2	protein_coding	nitrogen fixation S (NIFS)-like 1	Encodes a cysteine desulfurase whose activity is dependent on AtSufE activation. It requires pyridoxal phosphate (PLP) for proper folding.  Its catalytic efficiency is increase three-fold in the presence of AtFH (frataxin).	nitrogen fixation S (NIFS)-like 1;(source:Araport11)
AT5G65890.2	protein_coding	ACT domain repeat 1	Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques.	ACT domain repeat 1;(source:Araport11)
AT5G65940.3	protein_coding	beta-hydroxyisobutyryl-CoA hydrolase 1	hydrolyzes beta-hydroxyisobutyryl-CoA	beta-hydroxyisobutyryl-CoA hydrolase 1;(source:Araport11)
AT5G66190.2	protein_coding	ferredoxin-NADP(+)-oxidoreductase 1	Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase.  It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid.  The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme.  AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.	ferredoxin-NADP[+]-oxidoreductase 1;(source:Araport11)
AT5G66210.3	protein_coding	calcium-dependent protein kinase 28	Calcium Dependent Protein Kinase. Functions in the BIK1 innate immune response pathway.	calcium-dependent protein kinase 28;(source:Araport11)
AT5G66450.2	protein_coding	Phosphatidic acid phosphatase (PAP2) family protein	Encodes a phosphatidic acid phosphatase that can be detected in chloroplast membrane fractions. This gene (LPPepsilon2) and LPPepsilon1, appear to be less important for diacylglycerol formation in the plastids than LPPgamma.	Phosphatidic acid phosphatase (PAP2) family protein;(source:Araport11)
AT5G66455.1	pseudogene		pseudogene of pentatricopeptide (PPR) repeat-containing protein	pseudogene of Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G66510.2	protein_coding	gamma carbonic anhydrase 3	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	gamma carbonic anhydrase 3;(source:Araport11)
AT5G66670.2	protein_coding	Protein of unknown function (DUF677)		pectinesterase, putative (DUF677);(source:Araport11)
AT5G67110.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	encodes a myc/bHLH transcription factor-like  protein.  Gene product is involved in fruit  dehiscence.  Mutant siliques fail to dehisce.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G67110.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	encodes a myc/bHLH transcription factor-like  protein.  Gene product is involved in fruit  dehiscence.  Mutant siliques fail to dehisce.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G67488.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G67490;(source:Araport11)
GEM2	unknown		Genetic locus that acts gametophytically to disturb asymmetric division and cytokinesis at pollen mitosis I and maps to chromosome 5 between markers ciw9 and nga129.	
LIKE10	unknown			
ABP30	unknown			
ALA11	unknown			
ARCP1	unknown			
AVRA10	unknown			
CDS1	unknown			
CHI1	unknown			
CK22	unknown			
CS557	unknown			
CSDP3	unknown			
CSDP4	unknown			
DAPP1	unknown			
DIG5	unknown			
DUF151	unknown			
DVA1	unknown			
EILN3	unknown			
ET1	unknown			
FAZ1	unknown			
FP6	unknown			
FVE1	unknown			
FVE2	unknown			
GW2	unknown			
HBO1	unknown			
HIF48	unknown			
KBP1	unknown			
KBP2	unknown			
KEW1	unknown			
LPT1	unknown			
LRA5	unknown			
LTP144	unknown			
MIS4	unknown			
MIS5	unknown			
MKP5	unknown			
MLT107	unknown			
MLTI107	unknown			
MSR4	unknown			
MYB17	unknown			
NCS6	unknown			
NDR2	unknown			
PFKD1	unknown			
POB1	unknown			
PS11	unknown			
QC19	unknown			
REM18	unknown			
REM53	unknown			
RHS2	unknown			
RHS3	unknown			
RHS4	unknown			
ROX1	unknown			
SEN10	unknown			
SF21	unknown			
SKU15	unknown			
SLTI114	unknown			
SLTI25	unknown			
SLTI98	unknown			
SOR12	unknown			
SP46	unknown			
SSN3	unknown			
STI114	unknown			
TAIR1	unknown			
TBL2	unknown			
TER1	unknown		TER1 (GenBank accession no. HQ401284) encodes a putative template sequence (5&#8242;-CTAAACCCTA-3&#8242;) corresponding to 1.5 copies of the Arabidopsis telomere repeat (PNAS 2011, 108:73-78).  Overlaps with the 5’ UTR and the first two exons and introns of AT1G71310, a protein coding gene with unknown function.	
TF71	unknown			
TOL1	unknown			
UFL1	unknown			
UFL2	unknown			
UFL3	unknown			
VPS37	unknown			
LE18	unknown			
TMD2	unknown			
MOP2	unknown		Located between CIW7 and nga1139.  Involved in control of the steady-state levels of Arabidopsis PIN-type auxin efflux components.	
MOP3	unknown		Located between nga1139 and nga1107.  Involved in control of the steady-state levels of Arabidopsis PIN-type auxin efflux components.	
SHS1	unknown			
DCN1	unknown			
SGB2	unknown			
GP17	unknown			
OE1	unknown			
YB2	unknown			
EMB2748	unknown			
EMB1474	unknown			
EMB2221	unknown			
EMB3005	unknown			
EMB1875	unknown			
EMB1393	unknown			
IL5	unknown			
AT1G01046.1	miRNA_primary_transcript	MIR838a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUUCUUCUACUUCUUGCACA	microRNA ath-MIR838 precursor;(source:Araport11)
AT1G01110.2	protein_coding	IQ-domain 18	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 18;(source:Araport11)
AT1G01305.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G01355.1	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT1G01453.1	protein_coding			late embryogenesis abundant hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G01453.2	protein_coding			late embryogenesis abundant hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G01560.2	protein_coding	MAP kinase 11	Member of MAP Kinase family. Flg22-induced activation is blocked by AvrRpt2.	MAP kinase 11;(source:Araport11)
AT1G01695.1	protein_coding	Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related		Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT1G01910.5	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G02136.1	pseudogene		pseudogene of phagocytosis and cell motility protein	pseudogene of ELMO/CED-12 family protein;(source:Araport11)
AT1G02145.4	protein_coding	homolog of asparagine-linked glycosylation 12		homolog of asparagine-linked glycosylation 12;(source:Araport11)
AT1G02280.2	protein_coding	translocon at the outer envelope membrane of chloroplasts 33	Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo.	translocon at the outer envelope membrane of chloroplasts 33;(source:Araport11)
AT1G02850.5	protein_coding	beta glucosidase 11		beta glucosidase 11;(source:Araport11)
AT1G02860.2	protein_coding	SPX (SYG1/Pho81/XPR1) domain-containing protein	Encodes a ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses and mediates degradation of PHT1s at plasma membranes.  Targeted by MIR827. Ubiquitinates PHT1;3, PHT1;2, PHT1;1/AtPT1 and PHT1;4/AtPT2.	SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT1G02880.4	protein_coding	thiamin pyrophosphokinase1	Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.	thiamin pyrophosphokinase1;(source:Araport11)
AT1G02890.2	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT1G02950.4	protein_coding	glutathione S-transferase F4	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase F4;(source:Araport11)
AT1G03710.2	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT1G04425.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G04430.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G05040.2	protein_coding			UBA-like domain protein;(source:Araport11)
AT1G05136.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G05230.3	protein_coding	homeodomain GLABROUS 2	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes.  The mutations do not affect trichome growth or branch number.	homeodomain GLABROUS 2;(source:Araport11)
AT1G05291.1	protein_coding	Protein of unknown function (DUF1218)		GPI inositol-deacylase C, putative (DUF1218);(source:Araport11)
AT1G05380.2	protein_coding	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein		Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT1G05620.2	protein_coding	uridine-ribohydrolase  2	Encodes a cytosolic inosine nucleoside hydrolase. It forms a heterocomplex with NSH1 with almost two orders of magnitude higher catalytic efficiency for xanthosine hydrolysis than observed for NSH1 alone. Transcript levels for this gene are elevated in older leaves suggesting that it may play a role in purine catabolism during senescence.	uridine-ribohydrolase 2;(source:Araport11)
AT1G05820.2	protein_coding	SIGNAL PEPTIDE PEPTIDASE-LIKE 5		SIGNAL PEPTIDE PEPTIDASE-LIKE 5;(source:Araport11)
AT1G06137.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G06680.2	protein_coding	photosystem II subunit P-1	Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. Phosphorylation of this protein is dependent on calcium. In plsp1-1 mutant plastids, the nonmature form of the protein localizes in the stroma. The mRNA is cell-to-cell mobile.	photosystem II subunit P-1;(source:Araport11)
AT1G07010.2	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT1G07051.1	miRNA_primary_transcript	MIR847a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCACUCCUCUUCUUCUUGAUG	microRNA ath-MIR847 precursor;(source:Araport11)
AT1G07119.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G07120;(source:Araport11)
AT1G07175.1	protein_coding			alternative NAD(P)H dehydrogenase;(source:Araport11)
AT1G07280.3	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G07780.4	protein_coding	phosphoribosylanthranilate isomerase 1	Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family. The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT1G07890.8	protein_coding	ascorbate peroxidase 1	Encodes a cytosolic ascorbate peroxidase APX1.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. The mRNA is cell-to-cell mobile.	ascorbate peroxidase 1;(source:Araport11)
AT1G07901.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G08165.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G08570.3	protein_coding	atypical CYS  HIS rich thioredoxin 4	Encodes a member of the thioredoxin family protein.  Located in the chloroplast.  Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate   dehydrogenase. The mRNA is cell-to-cell mobile.	atypical CYS HIS rich thioredoxin 4;(source:Araport11)
AT1G08570.4	protein_coding	atypical CYS  HIS rich thioredoxin 4	Encodes a member of the thioredoxin family protein.  Located in the chloroplast.  Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate   dehydrogenase. The mRNA is cell-to-cell mobile.	atypical CYS HIS rich thioredoxin 4;(source:Araport11)
AT1G08800.2	protein_coding	Protein of unknown function, DUF593		myosin-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT1G09176.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G09195.1	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT1G09300.2	protein_coding	Metallopeptidase M24 family protein	Encodes a mitochondrial protease ICP55. Alters the stability of proteins by removal of a single amino acid from their sequence.	Metallopeptidase M24 family protein;(source:Araport11)
AT1G09421.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G09420;(source:Araport11)
AT1G09490.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G09570.2	protein_coding	phytochrome A	Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism.  Requires FHY1 for nuclear accumulation.	phytochrome A;(source:Araport11)
AT1G10060.3	protein_coding	branched-chain amino acid transaminase 1	encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	branched-chain amino acid transaminase 1;(source:Araport11)
AT1G10538.1	pseudogene		pseudogene of CPL4 (phosphoprotein phosphatase)	pseudogene of C-terminal domain phosphatase-like 4;(source:Araport11)
AT1G10586.1	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G10586.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G10650.2	protein_coding	SBP (S-ribonuclease binding protein) family protein		SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT1G10657.3	protein_coding	Plant protein 1589 of unknown function		transmembrane protein;(source:Araport11)
AT1G10657.4	protein_coding	Plant protein 1589 of unknown function		transmembrane protein;(source:Araport11)
AT1G10682.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	None;(source:Araport11)
AT1G10830.2	protein_coding	15-cis-zeta-carotene isomerase	Encodes a variant protein of the 15-cis-zeta-carotene isomase (Z-ISO) locus lacking Z-ISO activity.	15-cis-zeta-carotene isomerase;(source:Araport11)
AT1G10865.2	protein_coding			cytochrome C oxidase assembly factor;(source:Araport11)
AT1G10920.2	protein_coding	NB-ARC domain-containing disease resistance protein	Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family.  Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.	NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT1G11112.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G11175.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G11310.2	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter. It is a novel virulence target of the P. syringae type III secreted effector HopZ2.	Seven transmembrane MLO family protein;(source:Araport11)
AT1G11362.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G11482.1	pseudogene			pseudogene of hypothetical protein (DUF295);(source:Araport11)
AT1G11608.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G11684.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G12211.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G12294.1	miRNA_primary_transcript	MIR472a; miRNA	Encodes a microRNA that targets several CC-NBS-LRR family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUUUCCUACUCCGCCCAUAC	microRNA ath-MIR472 precursor;(source:Araport11)
AT1G12411.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G12900.3	protein_coding	glyceraldehyde 3-phosphate dehydrogenase A subunit 2		glyceraldehyde 3-phosphate dehydrogenase A subunit 2;(source:Araport11)
AT1G13195.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G13450.3	protein_coding	Homeodomain-like superfamily protein	Encodes GT-1, a plant transcription factor that binds to one of the cis-acting elements, BoxII, which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G13770.2	protein_coding	Protein of unknown function, DUF647		root UVB sensitive protein (Protein of unknown function, DUF647);(source:Araport11)
AT1G14048.1	protein_coding	GCK domain-containing protein		GCK domain-containing protein;(source:Araport11)
AT1G14071.1	miRNA_primary_transcript	MIR830a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUUCUCCAAAUAGUUUAGGUU	microRNA ath-MIR830 precursor;(source:Araport11)
AT1G14170.3	protein_coding	RNA-binding KH domain-containing protein		RNA-binding KH domain-containing protein;(source:Araport11)
AT1G14240.4	protein_coding	GDA1/CD39 nucleoside phosphatase family protein		GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11)
AT1G14270.4	protein_coding	CAAX amino terminal protease family protein		CAAX amino terminal protease family protein;(source:Araport11)
AT1G14315.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G14455.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G14650.2	protein_coding	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein		SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein;(source:Araport11)
AT1G14688.1	protein_coding			E3 ubiquitin ligase;(source:Araport11)
AT1G15015.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G15180.2	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT1G15320.2	protein_coding			seed dormancy control protein;(source:Araport11)
AT1G15772.1	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT1G16022.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G16489.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G16490;(source:Araport11)
AT1G16570.2	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a encodes a putative UDP-glycosyltransferase superfamily protein belonging to the glycosyltransferase (GT) family 33 that is localized to the endoplasmic reticulum. Loss of function alleles are male sterile, with pollen tubes bursting after germination. Loss of function also causes increased callose deposition in the female gametophyte, pollen tube overgrowth and reduced transmission.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G16916.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G17147.1	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT1G17255.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G17250;(source:Araport11)
AT1G17370.2	protein_coding	oligouridylate binding protein 1B	Encodes an RNA–binding protein involved in stress granule formation. Regulated by a transposable element small RNA.	oligouridylate binding protein 1B;(source:Araport11)
AT1G17744.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G18270.2	protein_coding	ketose-bisphosphate aldolase class-II family protein		ketose-bisphosphate aldolase class-II family protein;(source:Araport11)
AT1G18330.2	protein_coding	Homeodomain-like superfamily protein	EARLY-PHYTOCHROME-RESPONSIVE1	Homeodomain-like superfamily protein;(source:Araport11)
AT1G18382.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G18380;(source:Araport11)
AT1G18486.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G18730.3	protein_coding	NDH dependent flow 6	likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. The mRNA is cell-to-cell mobile.	NDH dependent flow 6;(source:Araport11)
AT1G18730.4	protein_coding	NDH dependent flow 6	likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. The mRNA is cell-to-cell mobile.	NDH dependent flow 6;(source:Araport11)
AT1G18773.1	protein_coding			acyl thioesterase-like protein;(source:Araport11)
AT1G18871.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G18879.1	miRNA_primary_transcript	MIR837a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AUCAGUUUCUUGUUCGUUUCA	microRNA ath-MIR837 precursor;(source:Araport11)
AT1G19086.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G19115.2	protein_coding		Member of the IGT gene family.	hypothetical protein;(source:Araport11)
AT1G19115.3	protein_coding		Member of the IGT gene family.	hypothetical protein;(source:Araport11)
AT1G19464.1	miRNA_primary_transcript	MIR864a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCAGGUAUGAUUGACUUCAAA	microRNA ath-MIR864 precursor;(source:Araport11)
AT1G19650.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G19715.2	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G19968.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G20100.2	protein_coding			DNA ligase-like protein;(source:Araport11)
AT1G20132.1	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G20135.1	protein_coding	GDSL-like Lipase/Acylhydrolase family protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase family protein;(source:Araport11)
AT1G20405.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G20875.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G21000.2	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT1G21202.1	miRNA_primary_transcript	MIR781a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUAGAGUUUUCUGGAUACUUA	microRNA ath-MIR781a precursor;(source:Araport11)
AT1G21651.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT1G21738.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G22065.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G22080.2	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT1G22403.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G22840.2	protein_coding	CYTOCHROME C-1	Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a  TCP-domain transcription factor, and a downstream  internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers. Double mutants with CYTC-2 accumulate starch during the day, have delayed growth and development and reduced GA and DELLA proteins linking cellular metabolism and GA homeostasis.	CYTOCHROME C-1;(source:Araport11)
AT1G22930.2	protein_coding	T-complex protein 11		T-complex protein 11;(source:Araport11)
AT1G23110.2	protein_coding			fold protein;(source:Araport11)
AT1G23110.3	protein_coding			fold protein;(source:Araport11)
AT1G23201.1	protein_coding			GCK domain protein;(source:Araport11)
AT1G23240.3	protein_coding	Caleosin-related family protein		Caleosin-related family protein;(source:Araport11)
AT1G23570.3	protein_coding	Domain of unknown function (DUF220)		hypothetical protein (DUF220);(source:Araport11)
AT1G23860.3	protein_coding	RS-containing zinc finger protein 21	Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RS-containing zinc finger protein 21;(source:Araport11)
AT1G24068.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G24148.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G24212.1	pseudogene		pseudogene of paired amphipathic helix repeat-containing protein	pseudogene of Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G24256.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G24388.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G24405.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G24485.1	protein_coding			ER protein carbohydrate-binding protein;(source:Araport11)
AT1G24485.2	protein_coding			ER protein carbohydrate-binding protein;(source:Araport11)
AT1G24657.1	pseudogene			pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G24733.1	pseudogene		pseudogene of CCoAMT (caffeoyl-CoA 3-O-methyltransferase)	pseudogene of S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G24792.1	pseudogene		pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related	pseudogene of F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G24800.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G24879.1	pseudogene		pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related	pseudogene of F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G24881.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G25053.1	pseudogene		pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related	pseudogene of F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G25055.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G25175.1	other_rna	other RNA		None;(source:Araport11)
AT1G25209.1	pseudogene		pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related	pseudogene of F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G25210.2	protein_coding	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein		UDP-3-O-acyl N-acetylglycosamine deacetylase family protein;(source:Araport11)
AT1G25211.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G25280.3	protein_coding	tubby like protein 10	Member of TLP family	tubby like protein 10;(source:Araport11)
AT1G25500.3	protein_coding	Plasma-membrane choline transporter family protein		Plasma-membrane choline transporter family protein;(source:Araport11)
AT1G26355.1	protein_coding	SPIRAL1-like1	SPIRAL1-LIKE1 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. GUS expression was detected only in pollen; however, no endogenous transcript was found.	SPIRAL1-like1;(source:Araport11)
AT1G26761.1	protein_coding	Arabinanase/levansucrase/invertase		Arabinanase/levansucrase/invertase;(source:Araport11)
AT1G26773.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G26921.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G27008.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G27110.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G27110.3	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G27461.1	protein_coding		Nuclear localized protein involved in osmotic stress tolerance.	hypothetical protein;(source:Araport11)
AT1G27671.1	pseudogene		pseudogene of DRM2/DMT7 (domain rearranged methyltransferase protein)	pseudogene of domains rearranged methyltransferase 2;(source:Araport11)
AT1G27752.2	protein_coding	Ubiquitin system component Cue protein		Ubiquitin system component Cue protein;(source:Araport11)
AT1G27921.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G27920;(source:Araport11)
AT1G28280.2	protein_coding	VQ motif-containing protein		VQ motif-containing protein;(source:Araport11)
AT1G28306.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G28395.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G28560.2	protein_coding	snRNA activating complex family protein	Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation.	snRNA activating complex family protein;(source:Araport11)
AT1G28630.5	protein_coding			transcriptional regulator EFH1-like protein;(source:Araport11)
AT1G29170.2	protein_coding	SCAR family protein	Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT1G29170.3	protein_coding	SCAR family protein	Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT1G29200.2	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G29200.3	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G29465.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G29560.2	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G29630.3	protein_coding	5'-3' exonuclease family protein		5-3 exonuclease family protein;(source:Araport11)
AT1G29790.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G29820.2	protein_coding	Magnesium transporter CorA-like family protein		Magnesium transporter CorA-like family protein;(source:Araport11)
AT1G29830.2	protein_coding	Magnesium transporter CorA-like family protein		Magnesium transporter CorA-like family protein;(source:Araport11)
AT1G30455.1	protein_coding	transcription regulators;translation initiation factors;zinc ion binding;transcription activators		cyclin/Brf1-like TBP-binding domain-containing protein;(source:Araport11)
AT1G30475.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G30814.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G30814.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G30972.2	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G30974.2	protein_coding	Plant thionin family protein	Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT1G31072.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G31093.1	pseudogene		pseudogene of calcium-dependant protein kinase	pseudogene of Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G31485.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G31490;(source:Araport11)
AT1G31540.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G31935.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT1G32049.1	pseudogene			pseudogene of RPB1a;(source:Araport11)
AT1G32172.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G32361.1	protein_coding	RING/U-box superfamily protein	Putative RING-H2 finger protein ATL1F precursor.	RING/U-box superfamily protein;(source:Araport11)
AT1G32540.3	protein_coding	lsd one like 1	Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.	lsd one like 1;(source:Araport11)
AT1G32570.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G32713.1	miRNA_primary_transcript	MIR829a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: CAAAUUAAAGCUUCAAGGUAG	microRNA ath-MIR829 precursor;(source:Araport11)
AT1G32870.2	protein_coding	NAC domain protein 13	Expression in rosette leaves is activated by high concentration of boron.	NAC domain protein 13;(source:Araport11)
AT1G32992.1	miRNA_primary_transcript	MIR856a; miRNA	Encodes a microRNA that targets CHX18 and potentially ZAT1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAAUCCUACCAAUAACUUCAGC	microRNA ath-MIR856 precursor;(source:Araport11)
AT1G33050.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G33102.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G33980.2	protein_coding	Smg-4/UPF3 family protein	Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD)	Smg-4/UPF3 family protein;(source:Araport11)
AT1G34042.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G34044.1	pseudogene			pseudogene of 50S ribosomal protein L34;(source:Araport11)
AT1G34380.2	protein_coding	5'-3' exonuclease family protein		5-3 exonuclease family protein;(source:Araport11)
AT1G34630.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G34780.2	protein_coding	APR-like 4	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.	APR-like 4;(source:Araport11)
AT1G35181.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G35242.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G35501.1	miRNA_primary_transcript	MIR773a; miRNA	Encodes a microRNA that targets MET2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUGCUUCCAGCUUUUGUCUC	microRNA ath-MIR773a precursor;(source:Araport11)
AT1G35545.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G35550 and AT1G35540;(source:Araport11)
AT1G36180.2	protein_coding	acetyl-CoA carboxylase 2	acetyl-CoA carboxylase 2 (ACC2) The mRNA is cell-to-cell mobile.	acetyl-CoA carboxylase 2;(source:Araport11)
AT1G36272.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G36942.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G36992.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G36990;(source:Araport11)
AT1G37113.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G42480.2	protein_coding			TLR4 regulator/MIR-interacting MSAP protein;(source:Araport11)
AT1G42525.1	protein_coding			cysteine proteinase superfamily protein;(source:Araport11)
AT1G43020.3	protein_coding	Protein of unknown function, DUF547		electron protein, putative (Protein of unknown function, DUF547);(source:Araport11)
AT1G43020.4	protein_coding	Protein of unknown function, DUF547		electron protein, putative (Protein of unknown function, DUF547);(source:Araport11)
AT1G43171.1	protein_coding			B3 domain protein;(source:Araport11)
AT1G43770.2	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G43850.2	protein_coding	SEUSS transcriptional co-regulator	Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.	SEUSS transcriptional co-regulator;(source:Araport11)
AT1G43890.3	protein_coding	RAB GTPASE HOMOLOG B18	ras-related small GTPase	RAB GTPASE HOMOLOG B18;(source:Araport11)
AT1G44770.2	protein_coding			elongation factor;(source:Araport11)
AT1G44910.2	protein_coding	pre-mRNA-processing protein 40A	Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold  for RNA processing machineries.	pre-mRNA-processing protein 40A;(source:Araport11)
AT1G44941.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G45000.2	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT1G45229.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G46554.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G47265.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G47271.1	protein_coding	Cystathionine beta-synthase (CBS) family protein		Cystathionine beta-synthase (CBS) family protein;(source:Araport11)
AT1G48070.2	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT1G48110.2	protein_coding	evolutionarily conserved C-terminal region 7		evolutionarily conserved C-terminal region 7;(source:Araport11)
AT1G48268.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G48360.2	protein_coding	zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides	Encodes a FAN1 homolog that is involved in interstrand crosslink repair. FAN1 appears to act in in a different pathway from MUS81 but in similar pathway with RECQ4A, RAD5A and MFH1.	zinc ion binding/nucleic acid binding/hydrolase;(source:Araport11)
AT1G48360.3	protein_coding	zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides	Encodes a FAN1 homolog that is involved in interstrand crosslink repair. FAN1 appears to act in in a different pathway from MUS81 but in similar pathway with RECQ4A, RAD5A and MFH1.	zinc ion binding/nucleic acid binding/hydrolase;(source:Araport11)
AT1G48380.2	protein_coding	root hair initiation protein root hairless 1 (RHL1)	Encodes a novel nuclear protein required for root hair initiation and ploidy-dependent cell growth.  Its sequence has similarity to the C-terminal domain of mammalian DNA topo IIalpha.  Shows in vitro DNA binding activity and is likely to be part of the topo VI complex by binding to subunit A.	root hair initiation protein root hairless 1 (RHL1);(source:Araport11)
AT1G48500.2	protein_coding	jasmonate-zim-domain protein 4		jasmonate-zim-domain protein 4;(source:Araport11)
AT1G48500.3	protein_coding	jasmonate-zim-domain protein 4		jasmonate-zim-domain protein 4;(source:Araport11)
AT1G48625.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G48912.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G48953.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G48980.3	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G48980.4	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G49032.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G49870.2	protein_coding			myosin-2 heavy chain-like protein;(source:Araport11)
AT1G50030.2	protein_coding	target of rapamycin	Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems.	target of rapamycin;(source:Araport11)
AT1G50140.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G50325.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G50440.3	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G51402.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G51823.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G52191.1	protein_coding	Thioesterase superfamily protein		Thioesterase superfamily protein;(source:Araport11)
AT1G52320.3	protein_coding			kinesin-like protein;(source:Araport11)
AT1G52320.4	protein_coding			kinesin-like protein;(source:Araport11)
AT1G52342.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G52343.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G52370.3	protein_coding	Ribosomal protein L22p/L17e family protein		Ribosomal protein L22p/L17e family protein;(source:Araport11)
AT1G52470.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52470.3	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52560.2	protein_coding	HSP20-like chaperones superfamily protein		HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G53366.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53430.2	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G53541.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53542.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53670.2	protein_coding	methionine sulfoxide reductase B 1		methionine sulfoxide reductase B 1;(source:Araport11)
AT1G53790.2	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G53801.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G53800;(source:Araport11)
AT1G53887.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53903.1	protein_coding	Protein of unknown function (DUF581)		linoleate 9S-lipoxygenase-4 protein, putative (DUF581);(source:Araport11)
AT1G54035.1	pseudogene		pseudogene of epithiospecifier protein	pseudogene of epithiospecifier protein;(source:Araport11)
AT1G54390.5	protein_coding	PHD finger protein-related	ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	PHD finger protein-like protein;(source:Araport11)
AT1G54610.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G54610.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G54680.2	protein_coding			translation initiation factor 3 subunit I;(source:Araport11)
AT1G55050.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G55120.2	protein_coding	beta-fructofuranosidase 5	Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.	beta-fructofuranosidase 5;(source:Araport11)
AT1G55152.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G55160.2	protein_coding			WAS/WASL-interacting family protein;(source:Araport11)
AT1G55205.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G55540.2	protein_coding	Nuclear pore complex protein		Nuclear pore complex protein;(source:Araport11)
AT1G55546.1	protein_coding			2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;(source:Araport11)
AT1G55591.1	miRNA_primary_transcript	MIR158b; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCCCCAAAUGUAGACAAAGCA	microRNA ath-MIR158b precursor;(source:Araport11)
AT1G55610.2	protein_coding	BRI1 like	mutant has Altered vascular cell differentiation; LRR Receptor Kinase	BRI1 like;(source:Araport11)
AT1G55964.1	pseudogene		pseudogene of myb family transcription factor	pseudogene of myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT1G56190.2	protein_coding	Phosphoglycerate kinase family protein	One of a pair of plastid localized phosphoglycerate kinases involved in galactolipid biosynthesis. Functions redundantly with AT3g12780 (PGK1) in the chloroplast in the biosynthesis of thylakoid membrane galactolipids. Double mutants are photosynthetically incompetent, plants are albino and seedling lethal.	Phosphoglycerate kinase family protein;(source:Araport11)
AT1G56385.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G56418.1	protein_coding			keratin-associated protein;(source:Araport11)
AT1G56423.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G57750.2	protein_coding	cytochrome P450, family 96, subfamily A, polypeptide 15	Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.	cytochrome P450, family 96, subfamily A, polypeptide 15;(source:Araport11)
AT1G57870.2	protein_coding	shaggy-like kinase 42		shaggy-like kinase 42;(source:Araport11)
AT1G58007.2	protein_coding			multidrug resistance protein;(source:Araport11)
AT1G58037.2	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G58350.2	protein_coding	Putative serine esterase  family protein		Putative serine esterase family protein;(source:Araport11)
AT1G58807.2	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G59171.2	protein_coding	Inositol-pentakisphosphate 2-kinase family protein		Inositol-pentakisphosphate 2-kinase family protein;(source:Araport11)
AT1G59540.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a kinesin-like protein.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G60072.1	miRNA_primary_transcript	MIR859a; miRNA	Encodes a microRNA that targets several F-box family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUCUCUGUUGUGAAGUCAAA	microRNA ath-MIR859 precursor;(source:Araport11)
AT1G60073.1	miRNA_primary_transcript	MIR774a; miRNA	Encodes a microRNA that targets several F-box family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGGUUACCCAUAUGGCCAUC	microRNA ath-MIR774a precursor;(source:Araport11)
AT1G60600.2	protein_coding	UbiA prenyltransferase family protein	Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport.	UbiA prenyltransferase family protein;(source:Araport11)
AT1G60610.3	protein_coding	SBP (S-ribonuclease binding protein) family protein		SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT1G60640.2	protein_coding			stress response protein;(source:Araport11)
AT1G60783.1	protein_coding			cyclin-dependent kinase inhibitor SMR2-like protein;(source:Araport11)
AT1G60990.3	protein_coding	Glycine cleavage T-protein family	Encodes a chloroplast-localized COG0354 protein that requires folate for its function in Fe/S cluster biogenesis.	Glycine cleavage T-protein family;(source:Araport11)
AT1G61093.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G61140.2	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related		SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT1G61140.3	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related		SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT1G61165.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G61224.1	miRNA_primary_transcript	MIR842a; miRNA	Encodes a microRNA that targets several Jacalin lectin family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCAUGGUCAGAUCCGUCAUCC	microRNA ath-MIR842 precursor;(source:Araport11)
AT1G61226.1	miRNA_primary_transcript	MIR846a; miRNA	Encodes a microRNA that targets several Jacalin lectin family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGAAUUGAAGUGCUUGAAUU	microRNA ath-MIR846 precursor;(source:Araport11)
AT1G61240.4	protein_coding	Protein of unknown function (DUF707)		lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT1G61415.1	protein_coding			CAP-gly domain linker;(source:Araport11)
AT1G61415.2	protein_coding			CAP-gly domain linker;(source:Araport11)
AT1G61475.1	protein_coding	ATP binding;protein kinases		ATP binding / protein kinase;(source:Araport11)
AT1G61542.1	pseudogene		pseudogenen of kelch repeat-containing F-box family protein	pseudogene of Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G61732.1	miRNA_primary_transcript	MIR776a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUAAGUCUUCUAUUGAUGUU	microRNA ath-MIR776 precursor;(source:Araport11)
AT1G62214.1	pseudogene			pseudogene of transmembrane protein;(source:Araport11)
AT1G62333.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G62530.2	protein_coding	Plant protein of unknown function (DUF863)		hypothetical protein (DUF863);(source:Araport11)
AT1G62880.2	protein_coding	Cornichon family protein		Cornichon family protein;(source:Araport11)
AT1G62886.1	protein_coding	Nucleotide excision repair, TFIIH, subunit TTDA		Nucleotide excision repair, TFIIH, subunit TTDA;(source:Araport11)
AT1G62978.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G62981.1	protein_coding	Protein of unknown function (DUF1191)		transmembrane protein, putative (DUF1191);(source:Araport11)
AT1G63057.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G63057.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G63206.1	protein_coding	Cystatin/monellin superfamily protein		Cystatin/monellin superfamily protein;(source:Araport11)
AT1G63770.3	protein_coding	Peptidase M1 family protein		Peptidase M1 family protein;(source:Araport11)
AT1G64110.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Target promoter of the male germline-specific transcription factor DUO1.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G64561.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G64563.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G64618.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G64625.2	protein_coding	Serine/threonine-protein kinase WNK (With No Lysine)-related	Encodes a plant-specific basic helix-loop-helix (bHLH) protein that is required for normal meiotic entry and the establishment of meiotic synchrony.  It plays a role in xylem differentiation downstream of auxin.	Serine/threonine-protein kinase WNK (With No Lysine)-like protein;(source:Araport11)
AT1G65032.1	protein_coding			COMPLEX 1 LYR-like protein;(source:Araport11)
AT1G65481.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G65484.1	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT1G65486.1	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT1G65541.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G65620.4	protein_coding	Lateral organ boundaries (LOB) domain family protein	Required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation.   Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.	Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT1G65642.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box/RNI-like superfamily protein;(source:Araport11)
AT1G65681.1	protein_coding	beta expansin 6	Encodes a beta-expansin EXPB6. Thought to be a pseudogene in Columbia, but a full-length gene in Landsberg erecta (Plant J 44:409-419, 2005). The current gene model on TAIR suggests it may not be a pseudogene in Columbia as previous suggested.	beta expansin 6;(source:Araport11)
AT1G65960.2	protein_coding	glutamate decarboxylase 2	glutamate decarboxylase (GAD2) The mRNA is cell-to-cell mobile.	glutamate decarboxylase 2;(source:Araport11)
AT1G66173.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G66534.1	pseudogene			pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G66540.2	protein_coding	Cytochrome P450 superfamily protein		Cytochrome P450 superfamily protein;(source:Araport11)
AT1G66550.2	protein_coding	WRKY DNA-binding protein 67	member of WRKY Transcription Factor; Group III	WRKY DNA-binding protein 67;(source:Araport11)
AT1G66852.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G67105.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G67150.3	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT1G67238.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G67328.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G67330;(source:Araport11)
AT1G67481.1	miRNA_primary_transcript	MIR839a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UACCAACCUUUCAUCGUUCCC	microRNA ath-MIR839 precursor;(source:Araport11)
AT1G67540.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G67792.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G67790;(source:Araport11)
AT1G67856.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G68080.4	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G68230.2	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT1G68238.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G68250.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G69210.2	protein_coding	Uncharacterised protein family UPF0090		Uncharacterized protein family UPF0090;(source:Araport11)
AT1G69252.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G69530.4	protein_coding	expansin A1	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A1;(source:Araport11)
AT1G69572.1	antisense_long_noncoding_rna	other RNA	Circadian regulated lncRNA, natural antisense gene of  CDF5 (AT1G69570). Displays antiphasic expression pattern in relation to CDF5 expression (PMID:28758689).	Natural antisense transcript overlaps with AT1G69570;(source:Araport11)
AT1G69720.2	protein_coding	heme oxygenase 3	Encodes a member (HO3) of the heme oxygenase family.	heme oxygenase 3;(source:Araport11)
AT1G69970.2	protein_coding	CLAVATA3/ESR-RELATED 26	Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. Can not replace CLV3 function in vivo.	CLAVATA3/ESR-RELATED 26;(source:Araport11)
AT1G70090.2	protein_coding	glucosyl transferase family 8	Encodes a protein with  putative galacturonosyltransferase activity.	glucosyl transferase family 8;(source:Araport11)
AT1G70185.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G70209.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G70581.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G70645.1	miRNA_primary_transcript	MIR777a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UACGCAUUGAGUUUCGUUGCU	microRNA ath-MIR777 precursor;(source:Araport11)
AT1G70830.5	protein_coding	MLP-like protein 28		MLP-like protein 28;(source:Araport11)
AT1G70944.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G70949.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G71002.1	miRNA_primary_transcript	MIR858a; miRNA	Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUCGUUGUCUGUUCGACCUU	microRNA ath-MIR858a precursor;(source:Araport11)
AT1G71020.2	protein_coding	ARM repeat superfamily protein	Encodes a nuclear localized plant U-Box protein that interacts with MYC2 and regulates its stability by acting as an E3 ubiquitin ligase and polyubiquitinating MYC2. By this mechanism, it targets MYC2 for destruction thereby affecting JA signaling.	ARM repeat superfamily protein;(source:Araport11)
AT1G71470.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G71528.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G71530;(source:Araport11)
AT1G71920.2	protein_coding	HISTIDINE BIOSYNTHESIS 6B	Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.	HISTIDINE BIOSYNTHESIS 6B;(source:Araport11)
AT1G72125.1	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G72131.1	pseudogene		pseudogene of proton-dependent oligopeptide transporter	pseudogene of Major facilitator superfamily protein;(source:Araport11)
AT1G72141.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G72360.3	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G72416.2	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G72416.3	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G72416.4	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G73066.1	protein_coding	Leucine-rich repeat family protein		Leucine-rich repeat family protein;(source:Araport11)
AT1G73180.2	protein_coding	Eukaryotic translation initiation factor eIF2A family protein		Eukaryotic translation initiation factor eIF2A family protein;(source:Araport11)
AT1G73350.3	protein_coding			ankyrin repeat protein;(source:Araport11)
AT1G73390.4	protein_coding	Endosomal targeting BRO1-like domain-containing protein		Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT1G73430.2	protein_coding	sec34-like family protein	COG3 is a component of a putative  conserved oligomeric Golgi (COG) complex that is thought to be involved in tethering of retrograde intra Golgi vesicles. In mutant pollen,golgi appear abnormal. It is required for proper deposition of cell wall materials in pollen tube growth. When homozygotes can be produced (by complementing the defect in pollen), the plants are embryo lethal suggesting an essential function. COG3 interacts with several other putative COG components.	sec34-like family protein;(source:Araport11)
AT1G73550.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	Encodes a Protease inhibitor/seed storage/LTP family protein	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G73650.4	protein_coding	Protein of unknown function (DUF1295)		3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295);(source:Araport11)
AT1G74140.5	protein_coding	Rhomboid-related intramembrane serine protease family protein		Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT1G74929.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G75335.1	protein_coding			nucleolar-like protein;(source:Araport11)
AT1G75717.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G75891.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G75890;(source:Araport11)
AT1G75920.4	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates. The mRNA is cell-to-cell mobile.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G76062.1	miRNA_primary_transcript	MIR835a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUCUUGCAUAUGUUCUUUAUC	microRNA ath-MIR835 precursor;(source:Araport11)
AT1G76140.2	protein_coding	Prolyl oligopeptidase family protein		Prolyl oligopeptidase family protein;(source:Araport11)
AT1G76728.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G76878.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G76880;(source:Araport11)
AT1G76892.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G76890;(source:Araport11)
AT1G76990.5	protein_coding	ACT domain repeat 3		ACT domain repeat 3;(source:Araport11)
AT1G76994.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G77131.1	pseudogene		Annotated as pseudogene of PGSIP, glycogenin glucosyltransferase.Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of plant glycogenin-like starch initiation protein 2;(source:Araport11)
AT1G77138.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT1G77525.1	protein_coding			defensin-like protein;(source:Araport11)
AT1G77765.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G77765.4	protein_coding			transmembrane protein;(source:Araport11)
AT1G77890.2	protein_coding	DNA-directed RNA polymerase II protein		DNA-directed RNA polymerase II protein;(source:Araport11)
AT1G77932.1	protein_coding	Protein of unknown function (DUF3049)		FANTASTIC four protein, putative (DUF3049);(source:Araport11)
AT1G77950.2	protein_coding	AGAMOUS-like 67		AGAMOUS-like 67;(source:Araport11)
AT1G77992.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G77990;(source:Araport11)
AT1G78172.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G78206.1	miRNA_primary_transcript	MIR775a; miRNA	Encodes a microRNA that targets a Galactosyltransferase Avr9 elicitor. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUCGAUGUCUAGCAGUGCCAA	microRNA ath-MIR775 precursor;(source:Araport11)
AT1G78478.1	miRNA_primary_transcript	MIR833a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAGACCGAUGUCAACAAACAAG	microRNA ath-MIR833a precursor;(source:Araport11)
AT1G78920.2	protein_coding	vacuolar H+-pyrophosphatase 2	Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.	vacuolar H+-pyrophosphatase 2;(source:Araport11)
AT1G78922.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G79480.2	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G79529.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT1G79530;(source:Araport11)
AT1G79830.2	protein_coding	golgin candidate 5	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast.  A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).	golgin Putative 5;(source:Araport11)
AT1G79940.3	protein_coding	DnaJ / Sec63 Brl domains-containing protein	J domain protein localized in ER membrane. Mutants have defective pollen germination.	DnaJ / Sec63 Brl domains-containing protein;(source:Araport11)
AT1G79990.2	protein_coding	structural molecules		coatomer subunit beta-2;(source:Araport11)
AT1G80100.2	protein_coding	histidine phosphotransfer protein 6	AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for  phosphotransfer, present in the other  AHPs. AHP6 does not appear to  have phosphotransfer activity. Acts  as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated  pericycle cell files. Negative regulator  of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of  the first exon. In ahp6-2 seedlings,  only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	histidine phosphotransfer protein 6;(source:Araport11)
AT1G80210.2	protein_coding	Mov34/MPN/PAD-1 family protein		Mov34/MPN/PAD-1 family protein;(source:Araport11)
AT1G81001.1	pseudogene			pseudogene of retinal-binding protein;(source:Araport11)
AT2G01008.1	protein_coding			maternal effect embryo arrest protein;(source:Araport11)
AT2G01021.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G01023.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G01070.2	protein_coding	Lung seven transmembrane receptor family protein		Lung seven transmembrane receptor family protein;(source:Araport11)
AT2G01554.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G01667.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G01800.2	protein_coding	COP1-interacting protein-related		COP1-interacting protein-like protein;(source:Araport11)
AT2G01800.3	protein_coding	COP1-interacting protein-related		COP1-interacting protein-like protein;(source:Araport11)
AT2G01973.1	pseudogene		pseudogene of OTU-like cysteine protease family protein	pseudogene of Cysteine proteinases superfamily protein;(source:Araport11)
AT2G02026.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G02061.1	protein_coding	Nucleotide-diphospho-sugar transferase family protein		Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT2G02080.2	protein_coding	indeterminate(ID)-domain 4	C2H2 BIRD transcription factor family.	indeterminate(ID)-domain 4;(source:Araport11)
AT2G02103.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT2G02741.1	miRNA_primary_transcript	MIR840a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: ACACUGAAGGACCUAAACUAAC	microRNA ath-MIR840 precursor;(source:Araport11)
AT2G03360.2	protein_coding	Glycosyltransferase family 61 protein		Glycosyltransferase family 61 protein;(source:Araport11)
AT2G03600.2	protein_coding	ureide permease 3	Encodes UPS3 (ureide permease 3), similar to UPS1, an allantoin transporter.	ureide permease 3;(source:Araport11)
AT2G03600.3	protein_coding	ureide permease 3	Encodes UPS3 (ureide permease 3), similar to UPS1, an allantoin transporter.	ureide permease 3;(source:Araport11)
AT2G03620.2	protein_coding	magnesium transporter 3	Transmembrane magnesium transporter. One of nine family members.	magnesium transporter 3;(source:Araport11)
AT2G03810.4	protein_coding	18S pre-ribosomal assembly protein gar2-related		18S pre-ribosomal assembly protein gar2-like protein;(source:Araport11)
AT2G03822.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G04170.3	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G04170.4	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G04378.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT2G04378.2	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT2G04622.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G04900.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G05210.2	protein_coding	Nucleic acid-binding, OB-fold-like protein	Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.	Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G05210.3	protein_coding	Nucleic acid-binding, OB-fold-like protein	Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.	Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G05294.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G05380.2	protein_coding	glycine-rich protein 3 short isoform	glycine-rich protein 3 short isoform (GRP3S) mRNA, complete The mRNA is cell-to-cell mobile.	glycine-rich protein 3 short isoform;(source:Araport11)
AT2G05400.2	protein_coding	Ubiquitin-specific protease family C19-related protein		Ubiquitin-specific protease family C19-related protein;(source:Araport11)
AT2G05441.1	pseudogene		Annotated as unknown pseudogene.Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	unknown protein;(source:Araport11)
AT2G05510.5	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT2G05510.6	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT2G05520.6	protein_coding	glycine-rich protein 3	Encodes a glycine-rich protein that is expressed mainly in stems and leaves.  AtGRP3 functions in root size determination during development and in Al stress. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to desiccation. The mRNA is cell-to-cell mobile.	glycine-rich protein 3;(source:Araport11)
AT2G05632.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05786.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G06002.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G06541.1	protein_coding	TTF-type zinc finger protein with HAT dimerisation domain		TTF-type zinc finger protein with HAT dimerization domain-containing protein;(source:Araport11)
AT2G06562.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G06667.1	protein_coding			transposase-associated domain protein;(source:Araport11)
AT2G07042.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G07213.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G07215;(source:Araport11)
AT2G07684.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07811.1	pseudogene		pseudogene of mitochondrial protein	pseudogene of unknown protein;(source:Araport11)
AT2G07815.1	protein_coding			LOW protein: cytochrome C biogenesis ccmF-like protein;(source:Araport11)
AT2G07820.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07825.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07830.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07835.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G09838.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G09992.1	pseudogene		pseudogene of disease-resistance protein	pseudogene of Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G09994.1	pseudogene		pseudogene of U-box domain-containing protein / armadillo/beta-catenin repeat family protein	pseudogene of ARM repeat superfamily protein;(source:Araport11)
AT2G10537.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G10557.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G10589.1	pseudogene			pseudogene of splicing factor 3A subunit;(source:Araport11)
AT2G10921.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G10920;(source:Araport11)
AT2G10931.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G11000.2	protein_coding	MAK10 homologue	Encodes a non-functional Arabidopsis homolog of the yeast protein MAK10, a component of the N-terminal acetyltransferase complex C. Mutant plants have normal photosynthesis as well as growth rates and pigmentation comparable to wild type.	MAK10 homologue;(source:Araport11)
AT2G11271.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G11522.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G11773.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G11778.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G11810.2	protein_coding	monogalactosyldiacylglycerol synthase type C	MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation.  Does not contribute to galactolipid synthesis under P1-sufficient conditions.	monogalactosyldiacylglycerol synthase type C;(source:Araport11)
AT2G11851.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G11852.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G11851;(source:Araport11)
AT2G11891.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G12408.1	pseudogene		pseudogene of zinc knuckle (CCHC-type) family protein	pseudogene of Zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT2G12461.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G13422.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G13463.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G13469.1	pseudogene			pseudogene of putative nucleic-acid protein;(source:Araport11)
AT2G13547.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G13851.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT2G14115.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G14120;(source:Araport11)
AT2G14288.1	protein_coding			F-box/kelch-repeat SKIP6-like protein;(source:Araport11)
AT2G14289.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G14692.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G14760.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G15025.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT2G15029.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G15050.3	protein_coding	lipid transfer protein	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	lipid transfer protein;(source:Araport11)
AT2G15128.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G15130.2	protein_coding	Plant basic secretory protein (BSP) family protein		Plant basic secretory protein (BSP) family protein;(source:Araport11)
AT2G15318.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G15530.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G15555.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G16016.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G16019.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G16190.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G16365.3	protein_coding	F-box family protein	PCH1 binds and stabilizes the active (Pfr) form of phytochrome B and is involved in the formation of photobodies in the nucleus. PCH1 is expressed in evenings and is associated to the evening complex through binding to phyB, and represses hypocotyl elongation and growth. Using mass spec, the existence of the At2g16365.2 isoform has been verified, however here is no evidence that any of the other three variants are present. Atg2G16365.2 will be assigned PCH1; exon 4 and 5 in the other variants are actually another gene of the F-box/DUF295 family with gene name FDA10.	F-box family protein;(source:Araport11)
AT2G16365.4	protein_coding	F-box family protein	PCH1 binds and stabilizes the active (Pfr) form of phytochrome B and is involved in the formation of photobodies in the nucleus. PCH1 is expressed in evenings and is associated to the evening complex through binding to phyB, and represses hypocotyl elongation and growth. Using mass spec, the existence of the At2g16365.2 isoform has been verified, however here is no evidence that any of the other three variants are present. Atg2G16365.2 will be assigned PCH1; exon 4 and 5 in the other variants are actually another gene of the F-box/DUF295 family with gene name FDA10.	F-box family protein;(source:Araport11)
AT2G16790.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G16900.3	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G17442.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G17442.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G17442.4	protein_coding			hypothetical protein;(source:Araport11)
AT2G17442.5	protein_coding			hypothetical protein;(source:Araport11)
AT2G17540.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G17695.2	protein_coding			outer envelope protein;(source:Araport11)
AT2G18721.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G18735.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G18917.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G18920 and AT2G18915;(source:Araport11)
AT2G18938.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G18969.1	protein_coding		Encodes a atypical member of the bHLH (basic helix-loop-helix) family transcriptional factors.	transcription factor/transcription regulator;(source:Araport11)
AT2G19146.1	protein_coding			reverse transcriptase-like protein;(source:Araport11)
AT2G19630.2	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G19796.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G20170.2	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT2G20298.1	pseudogene		pseudogene of exonuclease family protein	pseudogene of Exonuclease family protein;(source:Araport11)
AT2G20362.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G20495.2	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT2G20555.1	pseudogene		pseudogene of pentatricopeptide (PPR) repeat-containing protein	pseudogene of mitochondrial editing factor 21;(source:Araport11)
AT2G20585.3	protein_coding	nuclear fusion defective 6		nuclear fusion defective 6;(source:Araport11)
AT2G20784.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G20816.1	pseudogene		pseudogene of protein containing methyl-CpG-binding domain	pseudogene of methyl-CPG-binding domain 3;(source:Araport11)
AT2G20818.1	pseudogene		pseudogene of protein containing methyl-CpG-binding domain	pseudogene of methyl-CPG-binding domain 3;(source:Araport11)
AT2G20921.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G21230.3	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein	bZIP30 is a transcriptional activator that is involved in regulation of growth and development of reproductive organs. It interacts with a number of developmental regulators including WUS, HEC1, KNAT1/BP, KNAT2, JAB, BEL1, and NGA1.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G21520.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT2G21880.2	protein_coding	RAB GTPase homolog 7A		RAB GTPase homolog 7A;(source:Araport11)
AT2G22050.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G22241.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G22300.2	protein_coding	signal responsive 1	Encodes a putative CAM binding transcription factor. Loss of function mutations show enhanced resistance to fungal and bacterial pathogens suggesting that CAMTA functions to suppress defense responses.It acts in the cold response pathway, it can bind to and activate the expression of DREB1 genes.	signal responsive 1;(source:Araport11)
AT2G22426.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G22496.1	miRNA_primary_transcript	MIR779a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUCUGCUAUGUUGCUGCUCAU	microRNA ath-MIR779 precursor;(source:Araport11)
AT2G22520.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G22821.1	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT2G22820. The RNA is cell-to-cell mobile.	Natural antisense transcript overlaps with AT2G22820;(source:Araport11)
AT2G22942.1	protein_coding	growth factors		growth factor;(source:Araport11)
AT2G23067.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT2G23118.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G23142.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT2G23148.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT2G23321.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G23347.1	miRNA_primary_transcript	MIR844a; miRNA	Encodes a microRNA that targets a ubiquitin ligase complex-associated protein kinase family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AAUGGUAAGAUUGCUUAUAAG	microRNA ath-MIR844 precursor;(source:Araport11)
AT2G23672.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G23670;(source:Araport11)
AT2G23680.2	protein_coding	Cold acclimation protein WCOR413 family		Cold acclimation protein WCOR413 family;(source:Araport11)
AT2G23808.1	pseudogene		pseudogene of transcriptional factor B3 family protein	pseudogene of AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT2G23834.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G24103.1	miRNA_primary_transcript	MIR831a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGAUCUCUUCGUACUCUUCUUG	microRNA ath-MIR831 precursor;(source:Araport11)
AT2G24200.2	protein_coding	Cytosol aminopeptidase family protein		Cytosol aminopeptidase family protein;(source:Araport11)
AT2G24490.2	protein_coding	replicon protein A2	Encodes a component of Replication Protein A. Component of transcriptional gene silencing which does not affect endogenous small RNA  accumulation nor DNA methylation. Localized in the nucleus. Involved in DNA repair. Interacts physically with ROS1.	replicon protein A2;(source:Araport11)
AT2G24592.1	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT2G24683.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G24748.1	pseudogene		pseudogene of transcriptional factor B3 family protein	pseudogene of transcriptional factor B3 family protein;(source:Araport11)
AT2G24761.1	pseudogene		pseudogene of self-incompatibility protein-related protein	pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT2G24960.2	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT2G25011.1	miRNA_primary_transcript	MIR836a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCCUGUGUUUCCUUUGAUGCGUGG	microRNA ath-MIR836 precursor;(source:Araport11)
AT2G25171.1	miRNA_primary_transcript	MIR862a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCCAAUAGGUCGAGCAUGUGC	microRNA ath-MIR862 precursor;(source:Araport11)
AT2G25409.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G25570.3	protein_coding	binding		binding protein;(source:Araport11)
AT2G25880.2	protein_coding	ataurora2	Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division.  Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems.  In interphase cells, the protein is predominantly nuclear.  During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle.	ataurora2;(source:Araport11)
AT2G25964.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G26150.2	protein_coding	heat shock transcription factor A2	member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay.	heat shock transcription factor A2;(source:Araport11)
AT2G26211.1	miRNA_primary_transcript	MIR825a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUCUCAAGAAGGUGCAUGAAC	microRNA ath-MIR825 precursor;(source:Araport11)
AT2G26355.1	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT2G26360. The RNA is cell-to-cell mobile.	Natural antisense transcript overlaps with AT2G26360;(source:Araport11)
AT2G26670.2	protein_coding	Plant haem oxygenase (decyclizing) family protein	Encodes a plastid heme oxygenase necessary for phytochrome chromophore biosynthesis and for coupling the expression of some nuclear genes to the functional state of the chloroplast.	Plant heme oxygenase (decyclizing) family protein;(source:Araport11)
AT2G26810.2	protein_coding	Putative methyltransferase family protein		Putative methyltransferase family protein;(source:Araport11)
AT2G26810.3	protein_coding	Putative methyltransferase family protein		Putative methyltransferase family protein;(source:Araport11)
AT2G26882.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G26880;(source:Araport11)
AT2G27229.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G27250.3	protein_coding	CLAVATA3	One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis.  Belongs to a large gene family called CLE for CLAVATA3/ESR-related.  Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone.  The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide.  The functional form of CLV3 (MCLV3) was first reported to be a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline (Ito et al., Science 2006, 313:842; Kondo et al., Science 2006, 313:845).  Ohyama et al. (2009) later reported that the active mature CLV3 is a 13-amino-acid arabinosylated glycopeptide (Nature Chemical Biology, 5:578).  CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein.  It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function. Results obtained from whole seedlings challenge the concept that the immune receptor FLS2 perceives the meristematic regulatory peptide CLV3p in mesophyll, seedlings, and SAM cells and that CLV3p contributes to SAM immunity against bacterial infection (PMID:22923673).	CLAVATA3;(source:Araport11)
AT2G27700.2	protein_coding	eukaryotic translation initiation factor 2 family protein / eIF-2 family protein		eukaryotic translation initiation factor 2 family protein / eIF-2 family protein;(source:Araport11)
AT2G28426.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G28560.3	protein_coding	DNA repair (Rad51) family protein	Encodes a protein of the RAD51B family involved in double stranded DNA repair. Homozygous mutant plants show increased sensitivity to mitomycin which induces DS breaks.	DNA repair (Rad51) family protein;(source:Araport11)
AT2G28671.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G28800.3	protein_coding	63 kDa inner membrane family protein	member of Chloroplast membrane protein ALBINO3 family. Similar to pea PPF1 and may play a role in plant senescence.	63 kDa inner membrane family protein;(source:Araport11)
AT2G28840.2	protein_coding	XB3 ortholog 1 in Arabidopsis thaliana		hypothetical protein;(source:Araport11)
AT2G29263.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G29290.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G29340.3	protein_coding	NAD-dependent epimerase/dehydratase family protein		NAD-dependent epimerase/dehydratase family protein;(source:Araport11)
AT2G29452.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G29628.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G29654.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G29679.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G29780.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G30424.1	protein_coding	Homeodomain-like superfamily protein	In a tandem repeat with AT2g30432 (TCL1) and AT2g30420 (ETC2), it encodes a single-repeat R3 MYB transcription factor that is involved in the negative regulation of trichome formation.	Homeodomain-like superfamily protein;(source:Araport11)
AT2G30480.4	protein_coding			hypothetical protein;(source:Araport11)
AT2G30766.1	protein_coding		Functions in iron homeostasis, activates iron deficiency response genes such as bHLH38, bHLH39, IRT1, and FRO2.	hypothetical protein;(source:Araport11)
AT2G30933.2	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT2G30970.2	protein_coding	aspartate aminotransferase 1	ASPARTATE AMINOTRANSFERASE 1	aspartate aminotransferase 1;(source:Araport11)
AT2G30984.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G30985;(source:Araport11)
AT2G30990.3	protein_coding	Protein of unknown function (DUF688)		arginine N-methyltransferase, putative (DUF688);(source:Araport11)
AT2G31018.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G31141.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G31432.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT2G31625.1	pseudogene			pseudogene of DNA polymerase epsilon subunit B2;(source:Araport11)
AT2G31981.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G32160.3	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G32179.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G32180;(source:Araport11)
AT2G32250.4	protein_coding	FAR1-related sequence 2		FAR1-related sequence 2;(source:Araport11)
AT2G32315.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G32310;(source:Araport11)
AT2G32645.1	protein_coding	Domain of unknown function (DUF313) 		B3 domain protein, putative (DUF313);(source:Araport11)
AT2G33051.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G33050;(source:Araport11)
AT2G33310.3	protein_coding	auxin-induced protein 13	Auxin induced gene, IAA13 (IAA13).	auxin-induced protein 13;(source:Araport11)
AT2G33480.2	protein_coding	NAC domain containing protein 41		NAC domain containing protein 41;(source:Araport11)
AT2G33620.4	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT2G34186.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G34224.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G34230.2	protein_coding	Protein with domains of unknown function (DUF627 and DUF629)		ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629);(source:Araport11)
AT2G34238.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G34580.2	protein_coding			cytomegalovirus UL139 protein;(source:Araport11)
AT2G34840.2	protein_coding	Coatomer epsilon subunit		Coatomer epsilon subunit;(source:Araport11)
AT2G35613.1	pseudogene			pseudogene of decapping 2;(source:Araport11)
AT2G35658.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G35658.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G35658.3	protein_coding			transmembrane protein;(source:Araport11)
AT2G35990.2	protein_coding	Putative lysine decarboxylase family protein		Putative lysine decarboxylase family protein;(source:Araport11)
AT2G36026.1	protein_coding	Ovate family protein		Ovate family protein;(source:Araport11)
AT2G36355.2	protein_coding	Family of unknown function (DUF662) 		RAB6-interacting golgin (DUF662);(source:Araport11)
AT2G36460.2	protein_coding	Aldolase superfamily protein		Aldolase superfamily protein;(source:Araport11)
AT2G36854.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G36880.2	protein_coding	methionine adenosyltransferase 3		methionine adenosyltransferase 3;(source:Araport11)
AT2G37130.2	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT2G37500.2	protein_coding	arginine biosynthesis protein ArgJ family		arginine biosynthesis protein ArgJ family;(source:Araport11)
AT2G37700.2	protein_coding	Fatty acid hydroxylase superfamily		Fatty acid hydroxylase superfamily;(source:Araport11)
AT2G37760.5	protein_coding	NAD(P)-linked oxidoreductase superfamily protein	Encodes an NADPH-dependent aldo-keto reductase that can act on a wide variety of substrates in vitro including aliphatic and aromatic aldehydes and steroids. Transcript levels for this gene are up-regulated in response to cold, salt, and drought stress.	NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G37960.2	protein_coding			myosin-M heavy protein;(source:Araport11)
AT2G38195.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G38195.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G38646.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G38660.3	protein_coding	Amino acid dehydrogenase family protein		Amino acid dehydrogenase family protein;(source:Araport11)
AT2G38860.3	protein_coding	Class I glutamine amidotransferase-like superfamily protein	Encodes protease I (pfpI)-like protein YLS5.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT2G38920.2	protein_coding	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related		SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein;(source:Araport11)
AT2G38920.3	protein_coding	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related		SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein;(source:Araport11)
AT2G39435.1	protein_coding	Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related		Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT2G39445.1	protein_coding	Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit		Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit;(source:Araport11)
AT2G39780.2	protein_coding	ribonuclease 2	Encodes the main endoribonuclease activity in plant cells and localizes to the endoplasmic reticulum (ER), ER-derived structures, and vacuoles.  It is essential for normal ribosomal RNA recycling. The mRNA is cell-to-cell mobile.	ribonuclease 2;(source:Araport11)
AT2G39782.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G39851.1	protein_coding	Proteinase inhibitor, propeptide		Proteinase inhibitor, propeptide;(source:Araport11)
AT2G39865.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G40004.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G40520.3	protein_coding	Nucleotidyltransferase family protein		Nucleotidyltransferase family protein;(source:Araport11)
AT2G40520.4	protein_coding	Nucleotidyltransferase family protein		Nucleotidyltransferase family protein;(source:Araport11)
AT2G40711.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G40780.2	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G40935.3	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT2G41000.2	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G41082.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G41225.1	protein_coding		Encodes a protein of unknown function that is involved in regulation of cell expansion. Based on sequence similarity OSR2 is localized to the plasma membrane. It is expressed in organs that are undergoing cell expansion. Over-expression modifies plant sensitivity to ethylene, leading to improved drought tolerance.	transmembrane protein;(source:Araport11)
AT2G41342.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G41440.2	protein_coding			agamous-like MADS-box protein;(source:Araport11)
AT2G41445.1	protein_coding			agamous-like MADS-box protein;(source:Araport11)
AT2G41450.2	protein_coding	N-acetyltransferases;N-acetyltransferases		N-acetyltransferase;(source:Araport11)
AT2G41451.1	protein_coding			glycosyltransferase-like protein;(source:Araport11)
AT2G41460.2	protein_coding	apurinic endonuclease-redox protein	Apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.	apurinic endonuclease-redox protein;(source:Araport11)
AT2G41475.1	protein_coding	Embryo-specific protein 3, (ATS3)		Embryo-specific protein 3, (ATS3);(source:Araport11)
AT2G41600.4	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT2G41600.5	protein_coding	Mitochondrial glycoprotein family protein		Mitochondrial glycoprotein family protein;(source:Araport11)
AT2G41616.1	miRNA_primary_transcript	MIR778a; miRNA	Encodes a microRNA that targets several SET domain-containing genes including SUVH6. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGGCUUGGUUUAUGUACACCG	microRNA ath-MIR778 precursor;(source:Araport11)
AT2G42240.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G43240.2	protein_coding	Nucleotide-sugar transporter family protein		Nucleotide-sugar transporter family protein;(source:Araport11)
AT2G43255.2	protein_coding			O-acyltransferase WSD1-like protein;(source:Araport11)
AT2G43261.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G43261.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G43261.3	protein_coding			transmembrane protein;(source:Araport11)
AT2G43261.4	protein_coding			transmembrane protein;(source:Araport11)
AT2G43375.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G43386.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G43490.2	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G43490.3	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G43490.4	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G43490.5	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G43760.3	protein_coding	molybdopterin biosynthesis MoaE family protein		molybdopterin biosynthesis MoaE family protein;(source:Araport11)
AT2G43795.2	protein_coding			corepressor;(source:Araport11)
AT2G43920.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G44198.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G44470.3	protein_coding	beta glucosidase 29		beta glucosidase 29;(source:Araport11)
AT2G44480.2	protein_coding	beta glucosidase 17		beta glucosidase 17;(source:Araport11)
AT2G44581.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G44925.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G45023.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G45685.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G45680;(source:Araport11)
AT2G46100.2	protein_coding	Nuclear transport factor 2 (NTF2) family protein		Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT2G46170.2	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT2G46192.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT2G46225.2	protein_coding	ABI-1-like 1	Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching.  One of four ABI-like proteins.	ABI-1-like 1;(source:Araport11)
AT2G46308.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G46420.2	protein_coding	Plant protein 1589 of unknown function		helicase with zinc finger protein;(source:Araport11)
AT2G46430.2	protein_coding	cyclic nucleotide gated channel 3	Encodes a cyclic nucleotide gated channel, downstream component of the signaling pathways leading to hypersensitive response (HR) resistance.	cyclic nucleotide gated channel 3;(source:Araport11)
AT2G46567.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G46572.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT2G46570;(source:Araport11)
AT2G46995.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G47690.2	protein_coding	NADH-ubiquinone oxidoreductase-related		NADH-ubiquinone oxidoreductase-like protein;(source:Araport11)
AT2G47844.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G47940.2	protein_coding	DEGP protease 2	Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.	DEGP protease 2;(source:Araport11)
AT3G01040.2	protein_coding	galacturonosyltransferase 13	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 13;(source:Araport11)
AT3G01090.3	protein_coding	SNF1 kinase homolog 10	encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase	SNF1 kinase homolog 10;(source:Araport11)
AT3G01142.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G01140;(source:Araport11)
AT3G01150.2	protein_coding	polypyrimidine tract-binding protein 1	Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	polypyrimidine tract-binding protein 1;(source:Araport11)
AT3G01319.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G01480.2	protein_coding	cyclophilin 38	Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes. The mRNA is cell-to-cell mobile.	cyclophilin 38;(source:Araport11)
AT3G01572.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G01710.2	protein_coding	TPX2 (targeting protein for Xklp2) protein family		TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT3G01961.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G02180.3	protein_coding	SPIRAL1-like3	SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root,   leaf and petal growth as a result of defective anisotropic cell expansion.	SPIRAL1-like3;(source:Araport11)
AT3G02242.1	protein_coding			root meristem growth factor-like protein;(source:Araport11)
AT3G02410.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G02870.3	protein_coding	Inositol monophosphatase family protein	Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis.	Inositol monophosphatase family protein;(source:Araport11)
AT3G03341.1	protein_coding			cold-regulated protein;(source:Araport11)
AT3G03660.2	protein_coding	WUSCHEL related homeobox 11	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.	WUSCHEL related homeobox 11;(source:Araport11)
AT3G03726.1	protein_coding	Protein of unknown function (DUF295)		F-box/kelch-repeat protein, putative (DUF295);(source:Araport11)
AT3G03780.3	protein_coding	methionine synthase 2	Encodes a cytosolic methionine synthase, involved in methionine regeneration via the activated methyl cycle (or SAM cycle)	methionine synthase 2;(source:Araport11)
AT3G03826.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G03828.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G04030.3	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G04070.2	protein_coding	NAC domain containing protein 47		NAC domain containing protein 47;(source:Araport11)
AT3G04181.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G04184.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G04854.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G04855.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G04890.2	protein_coding	Uncharacterized conserved protein (DUF2358)		adenine phosphoribosyltransferase-like protein, putative (DUF2358);(source:Araport11)
AT3G04910.3	protein_coding	with no lysine (K) kinase 1	Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm.	with no lysine (K) kinase 1;(source:Araport11)
AT3G05270.2	protein_coding	Plant protein of unknown function (DUF869)	Encodes a protein that localizes at motile vesicle-like small compartments in differentiating xylem cells that is associated with microtubule plus-ends.  VETH-positive compartments are unlikely to be elements in conventional endomembrane trafficking pathways.  It can associate with COG2, and together these two proteins co-localize with the EXO70A1 exocyst subunit, tethering EXO70A1 to compartments associated with cortical microtubules.	filament-like protein (DUF869);(source:Araport11)
AT3G05380.3	protein_coding	DIRP ;Myb-like DNA-binding domain		ALWAYS EARLY 2;(source:Araport11)
AT3G05425.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G05746.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G05858.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G05860.3	protein_coding	MADS-box transcription factor family protein		MADS-box transcription factor family protein;(source:Araport11)
AT3G05905.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G05900;(source:Araport11)
AT3G05936.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G06019.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G06310.2	protein_coding	Cox19-like CHCH family protein		Cox19-like CHCH family protein;(source:Araport11)
AT3G06450.2	protein_coding	HCO3- transporter family		HCO3- transporter family;(source:Araport11)
AT3G06510.2	protein_coding	Glycosyl hydrolase superfamily protein	Encodes a protein with beta-glucosidase and galactosyltransferase activity, mutants show increased sensitivity to freezing.  Though it is classified as a family I glycosyl hydrolase, it has no hydrolase activity in vitro.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT3G06550.3	protein_coding	O-acetyltransferase family protein	Encodes a homolog of the protein Cas1p known to be involved in polysaccharide O-acetylation in Cryptococcus neoformans.  Mutants show reduced cell wall polysaccharide acetylation and increased resistance to Botrytis cinerea. The protein is expressed in the Golgi and is involved in the acetylation of xylan during secondary wall biosynthesis.	O-acetyltransferase family protein;(source:Araport11)
AT3G06600.2	protein_coding		At3G06600 encodes the plant KASH protein SINE3; SINE3 interacts with SUN1 and SUN2 and is localized at the nuclear envelope.	transmembrane protein;(source:Araport11)
AT3G06680.2	protein_coding	Ribosomal L29e protein family		Ribosomal L29e protein family;(source:Araport11)
AT3G06868.1	protein_coding			vitellogenin-like protein;(source:Araport11)
AT3G06962.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G07273.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G07300.3	protein_coding	NagB/RpiA/CoA transferase-like superfamily protein		NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT3G07522.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G07650.4	protein_coding	CONSTANS-like 9	This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO. The mRNA is cell-to-cell mobile.	CONSTANS-like 9;(source:Araport11)
AT3G08636.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G09090.2	protein_coding	defective in exine formation protein (DEX1)	Encodes DEX1 (defective in exine formation).  Required for exine pattern formation during pollen development.	defective in exine formation protein (DEX1);(source:Araport11)
AT3G09140.2	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT3G09560.3	protein_coding	Lipin family protein	The PAH1 gene encodes a phosphatidate phosphohydrolase. Mutant analysis revealed its involvement in galactolipid synthesis pathway, and the membrane lipid remodeling. The pah1pah2 double-mutant showed enhanced Al-susceptibility under low-P conditions, but there was no significant differences in Al tolerance between pah1pah2 and wild type when they were grown in a solution containing 35 &#956;M Pi.	Lipin family protein;(source:Araport11)
AT3G09863.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G09890.2	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT3G09940.2	protein_coding	monodehydroascorbate reductase	Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.	monodehydroascorbate reductase;(source:Araport11)
AT3G10020.2	protein_coding			plant/protein;(source:Araport11)
AT3G10114.1	pseudogene		pseudogene of glycosyl hydrolase family 81 protein	pseudogene of glycosyl hydrolase family 81 protein;(source:Araport11)
AT3G10282.1	pseudogene			pseudogene of TRICHOME BIREFRINGENCE-LIKE 14;(source:Araport11)
AT3G10439.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G10974.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G10986.1	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT3G11591.1	protein_coding			bric-a-brac protein;(source:Araport11)
AT3G11673.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box/FBD-like domains containing protein;(source:Araport11)
AT3G12587.1	protein_coding	Oligosaccaryltransferase		Oligosaccaryltransferase;(source:Araport11)
AT3G12835.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G12981.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT3G13061.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G13060;(source:Araport11)
AT3G13205.1	pseudogene		pseudogene of vacuolar protein sorting-associated protein	pseudogene of vacuolar protein sorting-associated protein-like protein;(source:Araport11)
AT3G13277.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G13630.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G13700.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G13724.1	miRNA_primary_transcript	MIR823a; miRNA	Encodes a microRNA that targets CMT3. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGGGUGGUGAUCAUAUAAGAU	microRNA ath-MIR823 precursor;(source:Araport11)
AT3G13825.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box family protein;(source:Araport11)
AT3G14025.1	pseudogene		pseudogene of scarecrow transcription factor family protein	pseudogene of GRAS family transcription factor;(source:Araport11)
AT3G14452.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G14590.2	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	Ca2+-dependent lipid-binding protein	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G14670.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G14880.2	protein_coding			transcription factor-like protein;(source:Araport11)
AT3G14981.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15095.3	protein_coding		Encodes HCF243 (high chlorophyll fluorescence), a chloroplast-localized protein involved in the D1 protein stability of the photosystem II complex1.	Serine/Threonine-kinase pakA-like protein;(source:Araport11)
AT3G15111.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15251.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15340.2	protein_coding	proton pump interactor 2	Encodes PPI2 (proton pump interactor 2), a homologue of PPI1, a protein that interacts with the plasma membrane H+ ATPase AHA1.	proton pump interactor 2;(source:Araport11)
AT3G15359.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15518.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15534.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15548.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G15578.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15604.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15605.2	protein_coding	nucleic acid binding		nucleic acid binding protein;(source:Araport11)
AT3G15605.3	protein_coding	nucleic acid binding		nucleic acid binding protein;(source:Araport11)
AT3G15840.4	protein_coding	post-illumination chlorophyll fluorescence increase	Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.	post-illumination chlorophyll fluorescence increase;(source:Araport11)
AT3G15909.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G16117.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G16432.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G16712.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G17205.2	protein_coding	ubiquitin protein ligase 6		ubiquitin protein ligase 6;(source:Araport11)
AT3G17261.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G17626.1	protein_coding	structural constituent of ribosome		structural constituent of ribosome;(source:Araport11)
AT3G17920.2	protein_coding	Outer arm dynein light chain 1 protein		Outer arm dynein light chain 1 protein;(source:Araport11)
AT3G18291.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G18410.2	protein_coding	Complex I subunit NDUFS6		NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 10-B-like protein (Complex I subunit NDUFS6);(source:Araport11)
AT3G18550.2	protein_coding	TCP family transcription factor 	Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth.	TCP family transcription factor;(source:Araport11)
AT3G18827.1	miRNA_primary_transcript	MIR868a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: CUUCUUAAGUGCUGAUAAUGC	microRNA ath-MIR868 precursor;(source:Araport11)
AT3G19002.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G19000;(source:Araport11)
AT3G19035.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G19274.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G19323.1	pseudogene		pseudogene of poly(A) binding protein	pseudogene of poly(A) binding protein 8;(source:Araport11)
AT3G19370.2	protein_coding	Plant protein of unknown function (DUF869)		filament-like protein (DUF869);(source:Araport11)
AT3G19370.3	protein_coding	Plant protein of unknown function (DUF869)		filament-like protein (DUF869);(source:Araport11)
AT3G19520.2	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT3G19580.2	protein_coding	zinc-finger protein 2	Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild desiccation. The protein is localized to the nucleus and acts as a transcriptional repressor.	zinc-finger protein 2;(source:Araport11)
AT3G19595.1	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G19663.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G19800.2	protein_coding	Protein of unknown function (DUF177)	Encodes the DUF177B version of the two DUF177 proteins in Arabidopsis.  This version differs from DUF177A in containing a 23 aa insertion compared to the DUF177A sequence.	E3 ubiquitin-protein ligase, putative (DUF177);(source:Araport11)
AT3G20541.1	pseudogene			pseudogene of Ankyrin repeat family protein;(source:Araport11)
AT3G20557.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G21175.3	protein_coding	ZIM-like 1	member of a novel family of plant-specific GATA-type transcription factors.	ZIM-like 1;(source:Araport11)
AT3G21371.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G21781.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G21780;(source:Araport11)
AT3G22022.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G22072.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G22070;(source:Araport11)
AT3G22121.1	antisense_long_noncoding_rna	other RNA	Natural antisense transcript overlaps with AT3G22120. The RNA is cell-to-cell mobile.	Natural antisense transcript overlaps with AT3G22120;(source:Araport11)
AT3G22170.2	protein_coding	far-red elongated hypocotyls 3	A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1.	far-red elongated hypocotyls 3;(source:Araport11)
AT3G22183.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G22345.1	protein_coding			F-box/kelch-repeat protein;(source:Araport11)
AT3G22380.2	protein_coding	time for coffee	Encodes a nucleus-acting plant-specific clock regulator working close to the central oscillator and affecting the circadian gating of light responses.  Circadian gating is the alteration of circadian phase according to the photoperiod of the entraining day/light cycle and the rhythmic antagonism of light responses in the early subjective night.  TIC differentially regulates CCA1 and PRR9 from LHY, with LHY expression as a dominant genetic target of TIC action. Also shown to be invoved in the maintenance of Arabidopsis thaliana metabolic homeostasis.	time for coffee;(source:Araport11)
AT3G22436.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G22492.1	pseudogene		pseudogene of prefoldin-related KE2 family protein	pseudogene of prefoldin 2;(source:Araport11)
AT3G22723.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G22937.1	pseudogene			pseudogene of no-apical-meristem-associated carboxy-terminal domain protein;(source:Araport11)
AT3G22961.1	protein_coding	Paired amphipathic helix (PAH2) superfamily protein		Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT3G23326.1	miRNA_primary_transcript	MIR853a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCCCCUCUUUAGCUUGGAGAAG	microRNA ath-MIR853 precursor;(source:Araport11)
AT3G23370.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G23610.2	protein_coding	dual specificity protein phosphatase 1	Encodes a dual specificity protein phosphatase whose activity is modulated by CaM binding.	dual specificity protein phosphatase 1;(source:Araport11)
AT3G23633.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G23640.2	protein_coding	heteroglycan glucosidase 1		heteroglycan glucosidase 1;(source:Araport11)
AT3G23890.2	protein_coding	topoisomerase II	Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.	topoisomerase II;(source:Araport11)
AT3G24080.2	protein_coding	KRR1 family protein		KRR1 family protein;(source:Araport11)
AT3G24170.3	protein_coding	glutathione-disulfide reductase	Encodes a cytosolic glutathione reductase.	glutathione-disulfide reductase;(source:Araport11)
AT3G24332.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G24330;(source:Araport11)
AT3G24516.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G24542.1	protein_coding	Beta-galactosidase related protein		Beta-galactosidase related protein;(source:Araport11)
AT3G25011.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G25013.1	protein_coding	Synaptobrevin family protein		Synaptobrevin family protein;(source:Araport11)
AT3G25014.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G25221.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G25230.2	protein_coding	rotamase FKBP 1	Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family.  It has three FKBP12-like domains, tetratricopeptide repeats, and a putative calmodulin binding domain. Modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	rotamase FKBP 1;(source:Araport11)
AT3G25573.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G25577.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G25716.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G25719.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G25795.1	other_rna	other RNA	Encodes a trans-acting siRNA that is phosphate starvation-upregulated and activated by PAP1 (MYB75). Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT3G26134.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT3G26147.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G26539.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G26720.2	protein_coding	Glycosyl hydrolase family 38 protein		Glycosyl hydrolase family 38 protein;(source:Araport11)
AT3G26742.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G26860.2	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G26890.4	protein_coding			meiosis chromosome segregation family protein;(source:Araport11)
AT3G26890.5	protein_coding			meiosis chromosome segregation family protein;(source:Araport11)
AT3G26900.2	protein_coding	shikimate kinase like 1	Encodes a protein with some sequence similarity to shikimate kinases, but a truncated form of this protein (lacking a putative N-terminal chloroplast transit peptide) does not have shikimate kinase activity in vitro. skl1-3 mutants have a variegated phenotype and skl1-8 mutants have an albino phenotype consistent with the observation of chloroplast defects in these mutants.	shikimate kinase like 1;(source:Araport11)
AT3G26900.3	protein_coding	shikimate kinase like 1	Encodes a protein with some sequence similarity to shikimate kinases, but a truncated form of this protein (lacking a putative N-terminal chloroplast transit peptide) does not have shikimate kinase activity in vitro. skl1-3 mutants have a variegated phenotype and skl1-8 mutants have an albino phenotype consistent with the observation of chloroplast defects in these mutants.	shikimate kinase like 1;(source:Araport11)
AT3G27027.1	protein_coding	Protein of unknown function (DUF 3339)		GPI-anchored-like protein (DUF 3339);(source:Araport11)
AT3G27100.2	protein_coding		ENY2 is a component of the deubiquitination module of the SAGA complex and is involved in the deubiquitination of histone 2B .	transcription/mRNA export factor;(source:Araport11)
AT3G27329.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G27331.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G27380.2	protein_coding	succinate dehydrogenase 2-1	One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion.  Expressed during germination and post-germinative growth.	succinate dehydrogenase 2-1;(source:Araport11)
AT3G27415.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G27416.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G27809.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G27999.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G28193.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G28216.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G28223.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G28230.2	protein_coding			something about silencing protein;(source:Araport11)
AT3G28243.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G28291.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G28674.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G28899.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G28918.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G29250.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G29252.1	pseudogene		pseudogene of short-chain dehydrogenase/reductase (SDR) family	pseudogene of NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G29633.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G29788.1	pseudogene			pseudogene of transmembrane protein;(source:Araport11)
AT3G30222.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G30705.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G41761.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G42047.1	pseudogene			pseudogene of Ta11-like non-LTR retrotransposon;(source:Araport11)
AT3G42148.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G42646.1	pseudogene		pseudogene of lactoylglutathione lyase family protein	pseudogene of Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT3G43291.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G43432.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43572.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G43574.1	protein_coding			beta-galactosidase-like protein;(source:Araport11)
AT3G44006.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G44261.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	Pol polyprotein/retrotransposon;(source:Araport11)
AT3G44274.1	pseudogene			pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G44350.2	protein_coding	NAC domain containing protein 61		NAC domain containing protein 61;(source:Araport11)
AT3G44400.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G44444.1	miRNA_primary_transcript	MIR849a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAACUAAACAUUGGUGUAGUA	microRNA ath-MIR849 precursor;(source:Araport11)
AT3G44704.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G44716.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G44757.1	pseudogene			pseudogene of transmembrane protein;(source:Araport11)
AT3G44798.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G45673.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G45851.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G46060.3	protein_coding	RAB GTPase homolog 8A	small GTP-binding protein (ara-3) The mRNA is cell-to-cell mobile.	RAB GTPase homolog 8A;(source:Araport11)
AT3G46086.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G46666.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G46911.1	pseudogene		pseudogene of CUL4 (protein binding / ubiquitin-protein ligase)	pseudogene of cullin4;(source:Araport11)
AT3G47341.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G47910.2	protein_coding	Ubiquitin carboxyl-terminal hydrolase-related protein		Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT3G47930.2	protein_coding	L-galactono-1,4-lactone dehydrogenase	L-Galactono-1,4-lactone dehydrogenase, catalyzes the final step of ascorbate biosynthesis	L-galactono-1,4-lactone dehydrogenase;(source:Araport11)
AT3G48057.1	miRNA_primary_transcript	MIR843a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUAGGUCGAGCUUCAUUGGA	microRNA ath-MIR843 precursor;(source:Araport11)
AT3G48058.1	pseudogene		pseudogene of Rac-like GTP-binding protein	pseudogene of RHO-related protein from plants 10;(source:Araport11)
AT3G48131.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G48201.1	miRNA_primary_transcript	MIR861a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: GAUGGAUAUGUCUUCAAGGAC	microRNA ath-MIR861 precursor;(source:Araport11)
AT3G48298.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G48344.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G48346.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G48900.2	protein_coding	single-stranded DNA endonuclease family protein	Encodes one of two GEN1 homologs in Arabidopsis.  It is a member of the class IV Rad2/XPG family of nucleases that processes Holliday junctions in a manner analogous to the HJ resolvases of phages, archaea, and bacteria.	single-stranded DNA endonuclease family protein;(source:Araport11)
AT3G49115.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G49162.1	pseudogene		pseudogene of glycoside hydrolase family 28 protein	pseudogene of Pectin lyase-like superfamily protein;(source:Araport11)
AT3G49551.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G49601.1	protein_coding			pre-mRNA-splicing factor;(source:Araport11)
AT3G49640.2	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G49645.1	protein_coding			FAD-binding protein;(source:Araport11)
AT3G49668.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G49670;(source:Araport11)
AT3G49680.2	protein_coding	branched-chain aminotransferase 3	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	branched-chain aminotransferase 3;(source:Araport11)
AT3G49744.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G49796.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G49832.1	pseudogene		pseudogene of kelch repeat-containing F-box family	pseudogene of Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G49845.1	protein_coding			cysteine-rich TM module stress tolerance protein;(source:Araport11)
AT3G50123.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G51100.3	protein_coding			altered inheritance of mitochondria protein;(source:Araport11)
AT3G51238.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G51240;(source:Araport11)
AT3G51478.1	pseudogene		pseudogene of glutamate receptor family	pseudogene of glutamate receptor 3.6;(source:Araport11)
AT3G51642.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G51644.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G51760.2	protein_coding	Protein of unknown function (DUF688)		hypothetical protein (DUF688);(source:Araport11)
AT3G52003.1	pseudogene		pseudogene of TON1 microtubule organization protein	pseudogene of tonneau family protein;(source:Araport11)
AT3G52120.2	protein_coding	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein;(source:Araport11)
AT3G52561.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G52680.2	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT3G52700.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G52742.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G52941.1	protein_coding	Putative membrane lipoprotein		Putative membrane lipoprotein;(source:Araport11)
AT3G53015.1	miRNA_primary_transcript	MIR771a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGAGCCUCUGUGGUAGCCCUC	microRNA ath-MIR771 precursor;(source:Araport11)
AT3G53016.1	miRNA_primary_transcript	MIR851a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUCGGUUCGCGAUCCACAAG	microRNA ath-MIR851 precursor;(source:Araport11)
AT3G53065.1	protein_coding	D-galactoside/L-rhamnose binding SUEL lectin protein		D-galactoside/L-rhamnose binding SUEL lectin protein;(source:Araport11)
AT3G53075.1	protein_coding	D-galactoside/L-rhamnose binding SUEL lectin protein		D-galactoside/L-rhamnose binding SUEL lectin protein;(source:Araport11)
AT3G53294.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G53342.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G53611.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	transmembrane protein;(source:Araport11)
AT3G54363.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G54510.2	protein_coding	Early-responsive to dehydration stress protein (ERD4)		Early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT3G54620.2	protein_coding	basic leucine zipper 25	bZIP transcription factor-like protein mRNA	basic leucine zipper 25;(source:Araport11)
AT3G54925.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G54960.2	protein_coding	PDI-like 1-3	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.	PDI-like 1-3;(source:Araport11)
AT3G55254.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G55258.1	pseudogene		pseudogene similar to self-incompatibility	pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G55566.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G55610.2	protein_coding	delta 1-pyrroline-5-carboxylate synthase 2	encodes delta 1-pyrroline-5-carboxylate synthetase B. Gene expression is induced by dehydration, high salt and ABA. Knock-out mutations in P5CS2 are embryo-lethal. P5CS2 appears to be present in different cells and/or different subcellular locations from P5CS1 in a tissue-dependent manner.   Mutants are defective in pollen development.	delta 1-pyrroline-5-carboxylate synthase 2;(source:Araport11)
AT3G55672.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G56408.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT3G56410;(source:Araport11)
AT3G56590.2	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G56891.1	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G57062.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G57072.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G57157.1	other_rna	other RNA	Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT3G57470.2	protein_coding	Insulinase (Peptidase family M16) family protein		Insulinase (Peptidase family M16) family protein;(source:Araport11)
AT3G57854.1	pseudogene		pseudogene similar to self-incompatibility	pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G58220.2	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT3G58877.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G59490.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G59884.1	miRNA_primary_transcript	MIR827a; miRNA	Encodes a microRNA that targets several SPX C3HC4 RING zinc finger family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUAGAUGACCAUCAACAAACU	microRNA ath-MIR827 precursor;(source:Araport11)
AT3G59950.3	protein_coding	Peptidase family C54 protein		Peptidase family C54 protein;(source:Araport11)
AT3G60000.2	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT3G60176.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT3G60250.2	protein_coding	casein kinase II  beta chain 3	Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in Arabidopsis	casein kinase II beta chain 3;(source:Araport11)
AT3G60286.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G60328.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G60590.4	protein_coding			cytochrome P450 family protein;(source:Araport11)
AT3G60890.2	protein_coding	protein binding		binding protein;(source:Araport11)
AT3G60957.1	pseudogene		pseudogene of GPT	pseudogene of UDP-glcnac-adolichol phosphate glcnac-1-p-transferase;(source:Araport11)
AT3G60961.1	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G61111.1	protein_coding	Zinc-binding ribosomal protein family protein		Zinc-binding ribosomal protein family protein;(source:Araport11)
AT3G61113.1	protein_coding	Ubiquitin related modifier 1		Ubiquitin related modifier 1;(source:Araport11)
AT3G61117.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G61280.2	protein_coding	Arabidopsis thaliana protein of unknown function (DUF821)		O-glucosyltransferase rumi-like protein (DUF821);(source:Araport11)
AT3G61415.2	protein_coding	SKP1-like 21		SKP1-like 21;(source:Araport11)
AT3G61571.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G61620.2	protein_coding	3'-5'-exoribonuclease family protein	exonuclease RRP41 (RRP41)	3-5-exoribonuclease family protein;(source:Araport11)
AT3G61721.1	pseudogene		pseudogene of protein binding / zinc ion binding/RING-H2 finger protein	pseudogene of hypothetical protein;(source:Araport11)
AT3G61723.1	protein_coding	PHD finger protein		PHD finger protein;(source:Araport11)
AT3G61826.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G61829.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G61850.4	protein_coding	Dof-type zinc finger DNA-binding family protein	Zinc finger transcription factor of the Dof family involved in the control of seed germination.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT3G61962.1	protein_coding	Putative membrane lipoprotein	This gene encodes a small protein and has either evidence of transcription or purifying selection.	Putative membrane lipoprotein;(source:Araport11)
AT3G62499.1	protein_coding	YTH family protein		YTH family protein;(source:Araport11)
AT3G62528.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G62529.1	pseudogene		pseudogene of pentatricopeptide (PPR) repeat-containing protein	pseudogene of Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G62830.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate  several cell wall biosynthetic enzymes.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G63020.2	protein_coding	Protein of unknown function (DUF3049)		hypothetical protein (DUF3049);(source:Araport11)
AT3G63052.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G63280.2	protein_coding	NIMA-related kinase 4	Encodes AtNek4, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 4;(source:Araport11)
AT4G00005.1	protein_coding	PRA1 (Prenylated rab acceptor) family protein		PRA1 (Prenylated rab acceptor) family protein;(source:Araport11)
AT4G00114.1	pseudogene		pseudogene of transketolase	pseudogene of Transketolase;(source:Araport11)
AT4G00342.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G00420.3	protein_coding	Double-stranded RNA-binding domain (DsRBD)-containing protein		Double-stranded RNA-binding domain (DsRBD)-containing protein;(source:Araport11)
AT4G00460.2	protein_coding	RHO guanyl-nucleotide exchange factor 3	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 3;(source:Araport11)
AT4G00467.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT4G00520.3	protein_coding	Acyl-CoA thioesterase family protein		Acyl-CoA thioesterase family protein;(source:Araport11)
AT4G00695.2	protein_coding			Spc97/Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT4G00730.2	protein_coding	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein	Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development. Loss of function mutants have increased cell wall polysaccharide content.	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein;(source:Araport11)
AT4G00891.1	pseudogene		pseudogene of APUM24 (RNA binding)	pseudogene of pumilio 24;(source:Araport11)
AT4G01037.1	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT4G01150.2	protein_coding			CURVATURE THYLAKOID 1A-like protein;(source:Araport11)
AT4G01516.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G01671.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G01680.3	protein_coding	myb domain protein 55	Encodes a putative transcription factor (MYB55).	myb domain protein 55;(source:Araport11)
AT4G01703.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	transmembrane protein;(source:Araport11)
AT4G02405.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G02489.1	protein_coding			reverse transcriptase;(source:Araport11)
AT4G02541.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G02590.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G02655.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G02890.4	protein_coding	Ubiquitin family protein	Polyubiquitin gene containing 4 ubiquitin repeats.	Ubiquitin family protein;(source:Araport11)
AT4G03039.1	miRNA_primary_transcript	MIR826a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAGUCCGGUUUUGGAUACGUG	microRNA ath-MIR826a precursor;(source:Araport11)
AT4G03113.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G03200.2	protein_coding	catalytics		catalytics;(source:Araport11)
AT4G03260.2	protein_coding	Outer arm dynein light chain 1 protein	MASP1 overexpression promotes growth during drought and promotes microtubule stability and recovery after stress as well as microtubule bundling.MASP1 growth promotion and microtubule stabilization activities are dependent upon serine 670 phosphorylation. MASP1 binds microtubules;this activity is not affected by MASP1 phosphorylation status.MASP1 protein levels are induced by drought post-transcriptionally.	Outer arm dynein light chain 1 protein;(source:Araport11)
AT4G03566.1	protein_coding			ribonuclease H;(source:Araport11)
AT4G03945.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT4G03945.2	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT4G04077.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G04078;(source:Araport11)
AT4G04078.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G04221.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G04220;(source:Araport11)
AT4G04601.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G04632.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G04957.1	protein_coding	Domain of unknown function (DUF1985)		RRM in demeter (DUF1985);(source:Araport11)
AT4G05018.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G05049.1	pseudogene			pseudogene of P53/DNA damage-regulated protein;(source:Araport11)
AT4G05050.3	protein_coding	ubiquitin 11	polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14.  Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.	ubiquitin 11;(source:Araport11)
AT4G05053.1	pseudogene		pseudogene of ATRCY1 (arginine-rich cyclin)	pseudogene of arginine-rich cyclin 1;(source:Araport11)
AT4G05071.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G05091.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G05420.2	protein_coding	damaged DNA binding protein 1A	Structurally similar to damaged DNA binding proteins. DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis. DDB1a is shown to be RUB-modified.	damaged DNA binding protein 1A;(source:Araport11)
AT4G07408.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G07526.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G07526.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G07699.1	pseudogene		pseudogene of zinc knuckle (CCHC-type) family protein	pseudogene of zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT4G07812.1	pseudogene			pseudogene of Beta-galactosidase related protein;(source:Araport11)
AT4G08406.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G09012.1	protein_coding	Mitochondrial ribosomal protein L27		Mitochondrial ribosomal protein L27;(source:Araport11)
AT4G09462.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT4G09464.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT4G09466.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT4G09467.1	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT4G09584.1	pseudogene			pseudogene of nucleic acid binding / zinc ion binding protein;(source:Araport11)
AT4G09649.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G09680.2	protein_coding	conserved telomere maintenance component 1	Encodes CTC1 (Conserved Telomere Maintenance Component 1) involved in telomere maintenance.	conserved telomere maintenance component 1;(source:Araport11)
AT4G09731.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G09784.1	protein_coding			histone deacetylase;(source:Araport11)
AT4G10345.1	miRNA_primary_transcript	MIR832a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGCUGGGAUCGGGAAUCGAAA	microRNA ath-MIR832 precursor;(source:Araport11)
AT4G10507.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G10970.4	protein_coding		UAP56-interacting factor1, binds single stranded RNA and, along with UIEF2,,appears to play a role in nuclear export of RNA.	ribosome maturation factor;(source:Araport11)
AT4G11642.1	pseudogene		pseudogene of ATOSM34 (osmotin-like protein)	pseudogene of osmotin 34;(source:Araport11)
AT4G11890.4	protein_coding	Protein kinase superfamily protein	Encodes a receptor-like cytosolic kinase ARCK1. Negatively controls abscisic acid and osmotic stress signal transduction.	Protein kinase superfamily protein;(source:Araport11)
AT4G11911.1	protein_coding			STAY-GREEN-like protein;(source:Araport11)
AT4G12020.2	protein_coding	protein kinase family protein	Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301.	protein kinase family protein;(source:Araport11)
AT4G12334.1	protein_coding	Cytochrome P450 superfamily protein		Cytochrome P450 superfamily protein;(source:Araport11)
AT4G12382.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G12382.2	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G12617.1	protein_coding			B3 domain protein;(source:Araport11)
AT4G12731.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G13020.4	protein_coding	Protein kinase superfamily protein	Encodes a member of the cdc2+ family of protein kinases MHK.  Similar to the mak genes of rats.  mak encodes a protein kinase that may play a role in spermatogenesis.	Protein kinase superfamily protein;(source:Araport11)
AT4G13493.1	miRNA_primary_transcript	MIR850a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAAGAUCCGGACUACAACAAAG	microRNA ath-MIR850 precursor;(source:Araport11)
AT4G13494.1	miRNA_primary_transcript	MIR863a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGAGAGCAACAAGACAUAAU	microRNA ath-MIR863 precursor;(source:Araport11)
AT4G13554.1	miRNA_primary_transcript	MIR857a; miRNA	Encodes a microRNA that targets a Laccase family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUUGUAUGUUGAAGGUGUAU	microRNA ath-MIR857 precursor;(source:Araport11)
AT4G13564.1	miRNA_primary_transcript	MIR841a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UACGAGCCACUUGAAACUGAA	microRNA ath-MIR841a precursor;(source:Araport11)
AT4G13575.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G13992.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G14105.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G14226.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G14301.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G14305.2	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT4G14358.1	protein_coding			high affinity nitrate transporter;(source:Araport11)
AT4G14504.1	miRNA_primary_transcript	MIR852a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AAGAUAAGCGCCUUAGUUCUGA	microRNA ath-MIR852 precursor;(source:Araport11)
AT4G14548.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G14710.4	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT4G14811.1	miRNA_primary_transcript	MIR780a; miRNA	Encodes a microRNA that targets CHX18. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUCUUCGUGAAUAUCUGGCA	microRNA ath-MIR780 precursor;(source:Araport11)
AT4G15242.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G15530.6	protein_coding	pyruvate orthophosphate dikinase	Encodes a dual-targeted protein believed to act as a pyruvate, orthophosphate dikinase. These enzymes are normally associated with C4 photosynthesis which does not occur in Arabidopsis. However, PPDK may play a role in remobilizing nitrogen during leaf senescence in Arabidopsis. The product of the long transcript (.1 gene model) was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. The two proteins were also found to be expressed in slightly different tissues.	pyruvate orthophosphate dikinase;(source:Araport11)
AT4G16008.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G16024.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G16355.1	other_rna	other RNA	Produces a long non-coding RNA that enhances resistance against Pseudomonas syringe pv. tomato DC3000.  It directly interacts with Mediator subunit 19a and enhances the expression of innate immune response genes, like PR1.	other_RNA;(source:Araport11)
AT4G16380.2	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G16451.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G16460.2	protein_coding			zinc finger CCCH domain protein;(source:Araport11)
AT4G16460.3	protein_coding			zinc finger CCCH domain protein;(source:Araport11)
AT4G16807.1	protein_coding			ATP-dependent caseinolytic protease/crotonase family protein;(source:Araport11)
AT4G16855.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G16892.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G16990.5	protein_coding	disease resistance protein (TIR-NBS class), putative		disease resistance protein (TIR-NBS class);(source:Araport11)
AT4G17150.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G17440.2	protein_coding	Protein of unknown function (DUF1639)		chromogranin (DUF1639);(source:Araport11)
AT4G17616.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G17905.1	protein_coding	RING/U-box superfamily protein	Putative RING-H2 finger protein ATL4H.	RING/U-box superfamily protein;(source:Araport11)
AT4G17908.1	pseudogene		pseudogene of ubiquitin-specific protease	pseudogene of ARF-GAP domain 8;(source:Araport11)
AT4G17914.1	pseudogene		pseudogene of ubiquitin-specific protease	pseudogene of ARF-GAP domain 8;(source:Araport11)
AT4G17915.1	pseudogene		pseudogene of pentatricopeptide (PPR) repeat-containing/C3HC4-type RING finger containing protein	pseudogene of Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT4G18120.2	pseudogene	MEI2-like 3	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML3 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML3 is the transcript with highest frequency of alternative splicing. Expression was detected during early embryo development (heart and torpedo stage); no accumulation was detected in vegetative and floral apices, as revealed by in situ hybridization.	MEI2-like 3;(source:Araport11)
AT4G18490.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G18692.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G18975.3	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G19040.2	protein_coding	ENHANCED DISEASE RESISTANCE 2	Encodes a PH and START domain-containing protein that mediates resistance to pathogenic fungi. Resistance requires salicylic acid signalling. Mutants are resistant to E. cichoracearum. Expressed throughout plant tissues and possibly localized to membranes /mitochondrion.	ENHANCED DISEASE RESISTANCE 2;(source:Araport11)
AT4G19150.2	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G19191.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G19360.2	protein_coding	SCD6 protein-related		SCD6 protein-like protein;(source:Araport11)
AT4G19452.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G19633.1	pseudogene		pseudogene of heat shock factor related protein	pseudogene of winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT4G19829.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	unknown protein
AT4G19902.1	pseudogene			pseudogene of Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT4G20095.2	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT4G20095.3	protein_coding	Protein of unknown function (DUF626)		hypothetical protein (DUF626);(source:Araport11)
AT4G20325.2	protein_coding			ribonuclease H2 subunit B;(source:Araport11)
AT4G21213.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G21362.1	miRNA_primary_transcript	MIR867a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGAACAUGGUUUAUUAGGAA	microRNA ath-MIR867 precursor;(source:Araport11)
AT4G21437.1	pseudogene		unknown pseudogene	unknown protein;(source:Araport11)
AT4G21895.1	protein_coding	DNA binding		DNA binding protein;(source:Araport11)
AT4G21902.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G21903.1	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT4G21926.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G22120.3	protein_coding	ERD (early-responsive to dehydration stress) family protein	Calcium-permeable stretch activated cation channel.	ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G22120.4	protein_coding	ERD (early-responsive to dehydration stress) family protein	Calcium-permeable stretch activated cation channel.	ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G22120.5	protein_coding	ERD (early-responsive to dehydration stress) family protein	Calcium-permeable stretch activated cation channel.	ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G22130.2	protein_coding	STRUBBELIG-receptor family 8		STRUBBELIG-receptor family 8;(source:Araport11)
AT4G22666.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G23215.1	pseudogene		pseudogene of cysteine-rich receptor-like protein kinase family protein	pseudogene of cysteine-rich RECEPTOR-like kinase;(source:Araport11)
AT4G23271.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G23375.1	miRNA_primary_transcript	MIR845b; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCGCUCUGAUACCAAAUUGAUG	microRNA ath-MIR845b precursor;(source:Araport11)
AT4G23387.1	miRNA_primary_transcript	MIR845a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: CGGCUCUGAUACCAAUUGAUG	microRNA ath-MIR845a precursor;(source:Araport11)
AT4G23430.3	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G24026.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G24204.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G24204.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G24204.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G24230.6	protein_coding	acyl-CoA-binding domain 3	acyl-CoA-binding protein ACBP3. Localized  extracellularly in transiently expressed tobacco BY-2  cells and onion epidermal cells. Binds arachidonyl-CoA with high  affinity. Microarray data shows up-regulation of many biotic- and abiotic-stress-related genes in an ACBP3 OE-1 in comparison to wild type.	acyl-CoA-binding domain 3;(source:Araport11)
AT4G24231.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G24350.2	protein_coding	Phosphorylase superfamily protein		Phosphorylase superfamily protein;(source:Araport11)
AT4G24644.1	protein_coding	Putative membrane lipoprotein	This gene encodes a small protein and has either evidence of transcription or purifying selection.	Putative membrane lipoprotein;(source:Araport11)
AT4G24790.2	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT4G24830.2	protein_coding	arginosuccinate synthase family		arginosuccinate synthase family;(source:Araport11)
AT4G24960.2	protein_coding	HVA22 homologue D	Homologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family, it may be involved in regulation of autophagy during development. The mRNA is cell-to-cell mobile.	HVA22 homologue D;(source:Araport11)
AT4G24973.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT4G24974.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT4G25070.2	protein_coding			caldesmon-like protein;(source:Araport11)
AT4G25080.4	protein_coding	magnesium-protoporphyrin IX methyltransferase	Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.	magnesium-protoporphyrin IX methyltransferase;(source:Araport11)
AT4G25190.2	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT4G25707.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	splicing factor 3A subunit;(source:Araport11)
AT4G25719.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G25720;(source:Araport11)
AT4G25885.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G25880;(source:Araport11)
AT4G26055.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G26110.2	protein_coding	nucleosome assembly protein1;1	Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes. The mRNA is cell-to-cell mobile. Plants mutated in three ubiquitously expressed NAP1 genes (NAP1;1~NAP1;3) and organ-specifically expressed NAP1;4 gene show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. The NAP1 genes act synergistically with NRP genes in promoting somatic homologous recombination.	nucleosome assembly protein1;(source:Araport11)
AT4G26420.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	A member of the Arabidopsis SABATH methyltransferase gene family.  Encodes GAMT1, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs).  Expressed most highly in the siliques during seed development. SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G26466.1	protein_coding	lorelei	Encodes a membrane localized (putative GPI-anchored) protein involved in fertilization. Loss of function mutations display defects in fertilization-around 25% of embryo sacs abort.	lorelei;(source:Araport11)
AT4G26701.1	protein_coding	DNA binding;DNA topoisomerase type Is		DNA binding / DNA topoisomerase type I;(source:Araport11)
AT4G26810.2	protein_coding	SWIB/MDM2 domain superfamily protein		SWIB/MDM2 domain superfamily protein;(source:Araport11)
AT4G27040.2	protein_coding	EAP30/Vps36 family protein		EAP30/Vps36 family protein;(source:Araport11)
AT4G27040.3	protein_coding	EAP30/Vps36 family protein		EAP30/Vps36 family protein;(source:Araport11)
AT4G27040.4	protein_coding	EAP30/Vps36 family protein		EAP30/Vps36 family protein;(source:Araport11)
AT4G27052.1	pseudogene		unknown pseudogene	unknown protein;(source:Araport11)
AT4G27430.2	protein_coding	COP1-interacting protein 7	Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression. The mRNA is cell-to-cell mobile.	COP1-interacting protein 7;(source:Araport11)
AT4G27480.2	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G27510.2	protein_coding			2-isopropylmalate synthase;(source:Araport11)
AT4G27765.1	miRNA_primary_transcript	MIR828a; miRNA	Encodes a microRNA that targets several MYB family members and the tasiRNA-generating transcript TAS4.  Cleavage of the TAS4 transcript by miR828 initiates processing of TAS4 transcripts in a 21-nucleotide register.  MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUUGCUUAAAUGAGUAUUCCA	microRNA ath-MIR828 precursor;(source:Araport11)
AT4G28040.5	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G28068.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G28530.2	protein_coding	NAC domain containing protein 74	Member of NAC family of transcription factors. Along with NAC2, KIR1 positively regulates programmed cell death of stigmatic tissue.	NAC domain containing protein 74;(source:Araport11)
AT4G28775.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G29103.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G29548.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G29654.1	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G29810.3	protein_coding	MAP kinase kinase 2	encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2.	MAP kinase kinase 2;(source:Araport11)
AT4G29930.4	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G30097.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G30872.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G30900.2	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT4G31115.2	protein_coding	Protein of unknown function (DUF1997)		DUF1997 family protein, putative (DUF1997);(source:Araport11)
AT4G31196.1	protein_coding	oxidoreductases		oxidoreductase;(source:Araport11)
AT4G31248.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G31250;(source:Araport11)
AT4G31351.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G31354.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection. The mRNA is cell-to-cell mobile.	hypothetical protein;(source:Araport11)
AT4G31355.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G31408.1	other_rna	other RNA		None;(source:Araport11)
AT4G31441.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G32080.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G32180.3	protein_coding	pantothenate kinase 2	Encodes a protein with pantothenate kinase activity.	pantothenate kinase 2;(source:Araport11)
AT4G32208.1	protein_coding	heat shock protein 70 (Hsp 70) family protein		heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT4G32212.1	pseudogene		unknown pseudogene	None;(source:Araport11)
AT4G32330.3	protein_coding	TPX2 (targeting protein for Xklp2) protein family	WDL5 is an target of EIN3 that co-localizes with cortical microtubles. It its thought to function to stabilize microtubles during ethylene induced hypocotyl elongation.	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT4G32342.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G32420.2	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G32520.2	protein_coding	serine hydroxymethyltransferase 3	Encodes a serine hydroxymethyltransferase SHMT3 located in the plastid.	serine hydroxymethyltransferase 3;(source:Araport11)
AT4G32530.2	protein_coding	ATPase, F0/V0 complex, subunit C protein		ATPase, F0/V0 complex, subunit C protein;(source:Araport11)
AT4G32630.2	protein_coding	ArfGap/RecO-like zinc finger domain-containing protein		ArfGap/RecO-like zinc finger domain-containing protein;(source:Araport11)
AT4G32640.2	protein_coding	Sec23/Sec24 protein transport family protein		Sec23/Sec24 protein transport family protein;(source:Araport11)
AT4G32850.10	protein_coding	nuclear poly(a) polymerase	Encodes a nuclear poly(A) polymerase. Located in the nucleus. The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT4G32850.9	protein_coding	nuclear poly(a) polymerase	Encodes a nuclear poly(A) polymerase. Located in the nucleus. The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT4G33000.3	protein_coding	calcineurin B-like protein 10	Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	calcineurin B-like protein 10;(source:Araport11)
AT4G33010.2	protein_coding	glycine decarboxylase P-protein 1		glycine decarboxylase P-protein 1;(source:Araport11)
AT4G33050.4	protein_coding	calmodulin-binding family protein	Encodes a calmodulin-binding protein involved in stomatal movement.	calmodulin-binding family protein;(source:Araport11)
AT4G33145.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G33360.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes an NAD+-dependent dehydrogenase that oxidizes farnesol more efficiently than other prenyl alcohol   substrates.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G33625.2	protein_coding			vacuole protein;(source:Araport11)
AT4G33950.2	protein_coding	Protein kinase superfamily protein	Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.  Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network.	Protein kinase superfamily protein;(source:Araport11)
AT4G34060.2	protein_coding	demeter-like protein 3	Encodes a protein with  5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.	demeter-like protein 3;(source:Araport11)
AT4G34071.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G34070;(source:Araport11)
AT4G34100.2	protein_coding	RING/U-box superfamily protein	Encodes a protein involved in cuticular wax biosynthesis. Lines carrying a recessive mutation in this locus have reduced chain-length distribution, weakly glaucous stem surface, and has reduced fertility in early flowers, non-spreading floret, downward cupped leaves, leaf waxes nearly pure C24 and C26 acid.	RING/U-box superfamily protein;(source:Araport11)
AT4G34103.1	pseudogene		pseudogene of protein binding / zinc ion binding protein	pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT4G34332.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G34330;(source:Araport11)
AT4G34610.2	protein_coding	BEL1-like homeodomain 6		BEL1-like homeodomain 6;(source:Araport11)
AT4G34881.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G35025.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G35110.4	protein_coding	Arabidopsis phospholipase-like protein (PEARLI 4) family		phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G35519.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G35580.2	protein_coding	NAC transcription factor-like 9	Encodes a calmodulin-binding NAC protein (CBNAC). Contains calmodulin-binding domain in the C-terminus of the protein. Functions as a calmodulin-regulated transcriptional repressor.	NAC transcription factor-like 9;(source:Araport11)
AT4G35733.1	protein_coding	F-box family protein with a domain of unknown function (DUF295)		F-box SKIP23-like protein (DUF295);(source:Araport11)
AT4G35830.2	protein_coding	aconitase 1	Encodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate, indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. This enzyme can also specifically bind to the 5' UTR of CSD2 in vitro.	aconitase 1;(source:Araport11)
AT4G36791.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G37095.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G37409.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G37483.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT4G37682.1	protein_coding	Protein of unknown function (DUF1399)	DUF1399 domain containing protein.	hypothetical protein (DUF1399);(source:Araport11)
AT4G38090.3	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		ribosomal protein S5 domain protein;(source:Araport11)
AT4G38092.1	protein_coding			exportin-4 protein;(source:Araport11)
AT4G38120.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G38215.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT4G38210;(source:Araport11)
AT4G38401.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G38405.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G38670.3	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT4G38781.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G38825.1	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G38950.2	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT4G39200.2	protein_coding	Ribosomal protein S25 family protein		Ribosomal protein S25 family protein;(source:Araport11)
AT4G39404.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT4G40011.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G40065.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G01300.2	protein_coding	PEBP (phosphatidylethanolamine-binding protein) family protein		PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11)
AT5G01390.2	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT5G01470.3	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G01732.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G01730;(source:Araport11)
AT5G01910.2	protein_coding			myelin transcription factor;(source:Araport11)
AT5G02390.2	protein_coding	Protein of unknown function (DUF3741)	Target promoter of the male germline-specific transcription factor DUO1.	TRM32-like protein (DUF3741);(source:Araport11)
AT5G02500.2	protein_coding	heat shock cognate protein 70-1	encodes a member of heat shock protein 70 family.	heat shock cognate protein 70-1;(source:Araport11)
AT5G02780.2	protein_coding	glutathione transferase lambda 1	Encodes a member of the lambda family of glutathione transferases. It has thiol transferase activity and self S-glutathionylation activity in vitro.	glutathione transferase lambda 1;(source:Araport11)
AT5G02870.2	protein_coding	Ribosomal protein L4/L1 family		Ribosomal protein L4/L1 family;(source:Araport11)
AT5G03204.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G03285.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G03377.1	pseudogene		pseudogene of acylphosphatase family protein	pseudogene of DC1 domain-containing protein;(source:Araport11)
AT5G03540.2	protein_coding	exocyst subunit exo70 family protein A1	AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. It plays a central role in Casparian strip formation, generating a transient positional information that will be translated into a precisely localized cell wall modification.	exocyst subunit exo70 family protein A1;(source:Araport11)
AT5G03552.1	miRNA_primary_transcript	MIR822a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGCGGGAAGCAUUUGCACAUG	microRNA ath-MIR822 precursor;(source:Araport11)
AT5G03944.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G03995.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G04047.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G04238.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G04250.2	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT5G04267.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G04853.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	transmembrane protein;(source:Araport11)
AT5G05113.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G05330.3	protein_coding	HMG-box (high mobility group) DNA-binding family protein	Encodes a protein with a putative HMG-box domain.  The high-mobility group (HMG) proteins are chromatin-associated proteins that act as architectural factors in various nucleoprotein structures, which regulate DNA-dependent processes such as transcription and recombination.  Expression of this gene was not detected according to Grasser et al. (J. Mol. Biol. 2006:358, 654-664).	HMG-box (high mobility group) DNA-binding family protein;(source:Araport11)
AT5G05540.2	protein_coding	small RNA degrading nuclease 2		small RNA degrading nuclease 2;(source:Araport11)
AT5G05970.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G06250.2	protein_coding	AP2/B3-like transcriptional factor family protein	Transcription repressor involved in regulation of inflorescence architecture.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G06265.2	protein_coding	hyaluronan mediated motility receptor-related		hyaluronan mediated motility receptor-like protein;(source:Araport11)
AT5G06278.1	pseudogene		pseudogene of abscisic acid-responsive HVA22 family protein	pseudogene of HVA22-like protein J;(source:Araport11)
AT5G06600.3	protein_coding	ubiquitin-specific protease 12	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 12;(source:Araport11)
AT5G06750.2	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT5G06750.3	protein_coding	Protein phosphatase 2C family protein		Protein phosphatase 2C family protein;(source:Araport11)
AT5G07250.2	protein_coding	RHOMBOID-like protein 3		RHOMBOID-like protein 3;(source:Araport11)
AT5G07322.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G07440.2	protein_coding	glutamate dehydrogenase 2	Encodes the alpha-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.	glutamate dehydrogenase 2;(source:Araport11)
AT5G07440.3	protein_coding	glutamate dehydrogenase 2	Encodes the alpha-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.	glutamate dehydrogenase 2;(source:Araport11)
AT5G07530.2	protein_coding	glycine rich protein 17	encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat.	glycine rich protein 17;(source:Araport11)
AT5G07550.3	protein_coding	glycine-rich protein 19	member of Oleosin-like protein family	glycine-rich protein 19;(source:Araport11)
AT5G07571.1	protein_coding	Oleosin family protein		Oleosin family protein;(source:Araport11)
AT5G07572.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G08130.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix-loop-helix (bHLH) family protein BIM1 (BES1-INTERACTING MYC-LIKE 1), involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G08391.1	protein_coding	Protein of unknown function (DUF 3339)		transmembrane protein, putative (DUF 3339);(source:Araport11)
AT5G08695.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G09250.2	protein_coding	ssDNA-binding transcriptional regulator	putative transcriptional co-activator (KIWI) mRNA, complete	ssDNA-binding transcriptional regulator;(source:Araport11)
AT5G09410.2	protein_coding	ethylene induced calmodulin binding protein	calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum)	ethylene induced calmodulin binding protein;(source:Araport11)
AT5G09443.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G09445;(source:Araport11)
AT5G09513.1	pseudogene		pseudogene of hAT dimerisation domain-containing protein	pseudogene of TTF-type zinc finger protein with HAT dimerization domain-containing protein;(source:Araport11)
AT5G09660.4	protein_coding	peroxisomal NAD-malate dehydrogenase 2	encodes a microbody NAD-dependent malate dehydrogenase  encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.	peroxisomal NAD-malate dehydrogenase 2;(source:Araport11)
AT5G09711.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	transmembrane protein;(source:Araport11)
AT5G09795.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box/RNI-like superfamily protein;(source:Araport11)
AT5G09900.3	protein_coding	26S proteasome regulatory subunit, putative (RPN5)	Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects.	26S proteasome regulatory subunit, putative (RPN5);(source:Araport11)
AT5G10336.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G10510.2	protein_coding	AINTEGUMENTA-like 6	Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. It is also required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions. Intronic sequences are required for its expression in flowers.Acts redundantly with PLT5 and 7 in lateral root pattern formation.	AINTEGUMENTA-like 6;(source:Araport11)
AT5G10946.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G11242.1	pseudogene		pseudogene of ribosomal protein	None;(source:Araport11)
AT5G11412.1	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G11416.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G11425.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G12043.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G12080.3	protein_coding	mechanosensitive channel of small conductance-like 10	Encodes a mechanosensitive (or stretch-activated) ion channel in the plasma membrane with a moderate preference for anions.Cell death activity is negatively regulated by phosphorylation while mechanosensitive properties are unaffected.	mechanosensitive channel of small conductance-like 10;(source:Araport11)
AT5G12150.2	protein_coding	Rho GTPase activation protein (RhoGAP) with PH domain	Encodes a protein with similarity to REN1, a Rho GTPase activating protein.It is cytoplasmic and plasma membrane associated in interphase, but during mitosis localizes to the CDZ/CDS in a POK-dependent manner.	Rho GTPase activation protein (RhoGAP) with PH domain-containing protein;(source:Araport11)
AT5G12236.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G12860.2	protein_coding	dicarboxylate transporter 1	AtpOMT1 encodes dicarboxylate transporter functions both as as an oxaloacetate/malate  transporter and as a 2-oxoglutarate/malate transporter.	dicarboxylate transporter 1;(source:Araport11)
AT5G13181.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G13660.2	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT5G13887.1	miRNA_primary_transcript	MIR848a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGACAUGGGACUGCCUAAGCUA	microRNA ath-MIR848 precursor;(source:Araport11)
AT5G14030.2	protein_coding	translocon-associated protein beta (TRAPB) family protein		translocon-associated protein beta (TRAPB) family protein;(source:Araport11)
AT5G14030.3	protein_coding	translocon-associated protein beta (TRAPB) family protein		translocon-associated protein beta (TRAPB) family protein;(source:Araport11)
AT5G14030.4	protein_coding	translocon-associated protein beta (TRAPB) family protein		translocon-associated protein beta (TRAPB) family protein;(source:Araport11)
AT5G14320.2	protein_coding	Ribosomal protein S13/S18 family		Ribosomal protein S13/S18 family;(source:Araport11)
AT5G14602.1	protein_coding			methyltransferase-like protein;(source:Araport11)
AT5G15008.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G15200.2	protein_coding	Ribosomal protein S4		Ribosomal protein S4;(source:Araport11)
AT5G15546.1	pseudogene		Represents a small remnant of a former expansin family pseudogene.  According to Sampedro et al. (Plant J 44:409-419, 2005), AT5G15546 does not qualify as a bona fide gene since it has so badly degraded.	pseudogene of expansin A25;(source:Araport11)
AT5G15581.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G15800.2	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a MADS box transcription factor involved flower and ovule development.  Functionally redundant with SEP2 and SEP3.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G15833.1	miRNA_primary_transcript	MIR865a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AUGAAUUUGGAUCUAAUUGAG	microRNA ath-MIR865 precursor;(source:Araport11)
AT5G15845.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G15850;(source:Araport11)
AT5G15853.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G16030.3	protein_coding			mental retardation GTPase activating protein;(source:Araport11)
AT5G16120.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G17523.1	protein_coding		Similar to Maltose excess protein 1	maltose excess-like protein;(source:Araport11)
AT5G17780.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G17847.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G18037.1	protein_coding	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein		NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT5G18100.2	protein_coding	copper/zinc superoxide dismutase 3	A putative peroxisomal CuZnSOD inducible by a high-light pulse.	copper/zinc superoxide dismutase 3;(source:Araport11)
AT5G18202.1	pseudogene			pseudogene of TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT5G18245.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G18240;(source:Araport11)
AT5G18404.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G18410.3	protein_coding	transcription activators	distorted trichomes and exhibits a diffuse actin cytoskeleton	transcription activator;(source:Araport11)
AT5G18661.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	transmembrane protein;(source:Araport11)
AT5G18748.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G19151.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G19221.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G19220;(source:Araport11)
AT5G20090.3	protein_coding	Uncharacterised protein family (UPF0041)	MPC1 negatively regulates ABA enhanced slow anion channel function during stomatal closure.	Uncharacterized protein family (UPF0041);(source:Araport11)
AT5G20447.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G22040.2	protein_coding			ubiquitin carboxyl-terminal hydrolase;(source:Araport11)
AT5G22044.1	pseudogene		pseudogene of zinc finger (C3HC4-type RING finger) protein	pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT5G22280.2	protein_coding			peptidyl-prolyl cis-trans isomerase G;(source:Araport11)
AT5G22370.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes QQT1.  Required for early embryo development.  qqt1 mutant lines are embryo-defective.  Participates in the organization of microtubules during cell division.  Interacts with QQT2 (encoded by AT4G21800).	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G22788.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G22792.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box family protein;(source:Araport11)
AT5G22794.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G23250.2	protein_coding	Succinyl-CoA ligase, alpha subunit		Succinyl-CoA ligase, alpha subunit;(source:Araport11)
AT5G23260.3	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat.  Also shown to be necessary for determining the identity of the endothelial layer within the ovule.  Paralogous to GOA. Plays a maternal role in fertilization and seed development.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G23411.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G23413.1	pseudogene			pseudogene of HMG-box (high mobility group) DNA-binding family protein;(source:Araport11)
AT5G23510.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G23830.2	protein_coding	MD-2-related lipid recognition domain-containing protein		MD-2-related lipid recognition domain-containing protein;(source:Araport11)
AT5G23903.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G23908.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G24318.2	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G24780.2	protein_coding	vegetative storage protein 1	encodes an acid phosphatase similar to soybean vegetative storage proteins. Gene expression is induced by wounding and jasmonic acid.	vegetative storage protein 1;(source:Araport11)
AT5G24879.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G26038.1	miRNA_primary_transcript	MIR860a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCAAUAGAUUGGACUAUGUAU	microRNA ath-MIR860 precursor;(source:Araport11)
AT5G26110.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G26146.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G26150;(source:Araport11)
AT5G26262.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G26570.2	protein_coding	catalytics;carbohydrate kinases;phosphoglucan, water dikinases	chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position.	chloroplastidic  phosphoglucan, water dikinase (ATGWD3);(source:Araport11)
AT5G27090.2	protein_coding	AGAMOUS-like 54		AGAMOUS-like 54;(source:Araport11)
AT5G27238.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G27247.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G27395.2	protein_coding	Mitochondrial inner membrane translocase complex, subunit Tim44-related protein		Mitochondrial inner membrane translocase complex, subunit Tim44-related protein;(source:Araport11)
AT5G27771.1	pseudogene		pseudogene of (SAUR) auxin-responsive family protein	pseudogene of SAUR-like auxin-responsive protein family;(source:Araport11)
AT5G27889.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G27944.1	protein_coding	MADS-box transcription factor family protein		MADS-box transcription factor family protein;(source:Araport11)
AT5G28469.1	pseudogene		pseudogene of disease-resistance protein	pseudogene of Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G28491.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G28919.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G29000.4	protein_coding	Homeodomain-like superfamily protein	MYB-CC family member. PHL1 acts redundantly with PHR1 to regulate responses to Pi starvation.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G29054.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	Gag-Pol polyprotein/retrotransposon;(source:Araport11)
AT5G32072.1	pseudogene		pseudogene of Glucose-6-phosphate isomerase	pseudogene of Sugar isomerase (SIS) family protein;(source:Araport11)
AT5G32440.2	protein_coding	Ubiquitin system component Cue protein		Ubiquitin system component Cue protein;(source:Araport11)
AT5G33439.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G34829.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G35069.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G35180.2	protein_coding	Protein of unknown function (DUF1336)		ENHANCED DISEASE RESISTANCE protein (DUF1336);(source:Araport11)
AT5G35180.3	protein_coding	Protein of unknown function (DUF1336)		ENHANCED DISEASE RESISTANCE protein (DUF1336);(source:Araport11)
AT5G35688.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	zinc metalloproteinase-like protein;(source:Araport11)
AT5G35915.1	pseudogene			pseudogene of Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT5G36100.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G36297.1	pseudogene		pseudogene of aspartyl protease family protein	pseudogene of Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G36700.2	protein_coding	2-phosphoglycolate phosphatase 1		2-phosphoglycolate phosphatase 1;(source:Araport11)
AT5G36700.3	protein_coding	2-phosphoglycolate phosphatase 1		2-phosphoglycolate phosphatase 1;(source:Araport11)
AT5G36790.2	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G36903.1	pseudogene		pseudogene of protein related to self-incompatibility	pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G36904.1	pseudogene		pseudogene of protein related to self-incompatibility	pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G36930.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G37290.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G37380.4	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G37380.5	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G37415.2	protein_coding	AGAMOUS-like 105	Encodes a MADS-box gene AGL105 (AGAMOUS-LIKE 105). Note that previous reports (Plant Cell 2003,15:1538; PNAS 2003, 100:13407) have incorrectly named AT5G37420 as AGL105.  Current nomenclature is based on Plant Cell 2003, 15:1538 where the GenBank accession number given for AGL105 is AY141227 (Supplemental Table 3), which corresponds to AT5G37415.	AGAMOUS-like 105;(source:Araport11)
AT5G37732.1	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT5G37950.2	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G38060.2	protein_coding			carboxypeptidase;(source:Araport11)
AT5G38320.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G38410.3	protein_coding	Ribulose bisphosphate carboxylase (small chain) family protein	Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410). Functions to yield sufficient Rubisco content for leaf photosynthetic capacity.	Ribulose bisphosphate carboxylase (small chain) family protein;(source:Araport11)
AT5G38437.1	transposable_element_gene	transposable element gene		transposable_element_gene;(source:Araport11)
AT5G39024.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G39190.2	protein_coding	germin-like protein 2	germin-like protein (GLP2a)	germin-like protein 2;(source:Araport11)
AT5G39330.2	protein_coding	Protein of unknown function (DUF1163)		transmembrane protein, putative (DUF1163);(source:Araport11)
AT5G39471.1	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G39473.1	pseudogene		pseudogene of DC1 (domain-containing protein)	pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G39493.1	protein_coding	Plant self-incompatibility protein S1 family	SPH family protein containing 112 residues, eight beta strands and connecting loops.	Plant self-incompatibility protein S1 family;(source:Araport11)
AT5G39693.1	miRNA_primary_transcript	MIR869a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUGGUGUUGAGAUAGUUGAC	microRNA ath-MIR869 precursor;(source:Araport11)
AT5G40275.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G40316.1	other_rna	other RNA		other_RNA;(source:Araport11)
AT5G40370.2	protein_coding	Glutaredoxin family protein		Glutaredoxin family protein;(source:Araport11)
AT5G40382.1	protein_coding	Cytochrome c oxidase subunit Vc family protein		Cytochrome c oxidase subunit Vc family protein;(source:Araport11)
AT5G40384.1	miRNA_primary_transcript	MIR866a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: ACAAAAUCCGUCUUUGAAGA	microRNA ath-MIR866 precursor;(source:Araport11)
AT5G40700.3	protein_coding			transcriptional regulator ATRX-like protein;(source:Araport11)
AT5G40840.3	protein_coding	Rad21/Rec8-like family protein	Cohesion family protein SYN2 (SYN2). Plays a role in somatic DNA double strand break damage repair.	Rad21/Rec8-like family protein;(source:Araport11)
AT5G40981.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G41071.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	transmembrane protein;(source:Araport11)
AT5G41109.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G41390.2	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT5G41401.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	transmembrane protein;(source:Araport11)
AT5G41420.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G41494.1	pseudogene		pseudogene of F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G41761.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G41908.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G42053.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G42265.1	pseudogene			pseudogene of Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT5G42504.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G42560.3	protein_coding	Abscisic acid-responsive (TB2/DP1, HVA22) family protein		Abscisic acid-responsive (TB2/DP1, HVA22) family protein;(source:Araport11)
AT5G42630.2	protein_coding	Homeodomain-like superfamily protein	Encodes a member of the KANADI family of putative transcription factors.  Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G43066.1	protein_coding		Homolog of prePIP1.	transmembrane protein;(source:Araport11)
AT5G43211.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G43240.3	protein_coding	Protein of unknown function (DUF674)		hypothetical protein (DUF674);(source:Araport11)
AT5G43695.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G44065.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G44306.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G44560.2	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT5G44585.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G44750.2	protein_coding	DNA-directed DNA polymerases	Homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).	DNA-directed DNA polymerase;(source:Araport11)
AT5G44990.2	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT5G44990.3	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT5G45276.1	pseudogene			pseudogene of Frigida-like protein;(source:Araport11)
AT5G45290.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G45469.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G45940.2	protein_coding	nudix hydrolase homolog 11	Encodes a CoA pyrophosphatase, also has ppGpp pyrophosphohydrolase and exhibits minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl, flower, and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette.	nudix hydrolase homolog 11;(source:Araport11)
AT5G46410.2	protein_coding	SCP1-like small phosphatase 4	Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4). The mRNA is cell-to-cell mobile.	SCP1-like small phosphatase 4;(source:Araport11)
AT5G46610.3	protein_coding	Aluminium activated malate transporter family protein		aluminum activated malate transporter family protein;(source:Araport11)
AT5G46730.2	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT5G47229.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	transmembrane protein;(source:Araport11)
AT5G47690.2	protein_coding	binding	One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	binding protein;(source:Araport11)
AT5G47690.3	protein_coding	binding	One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	binding protein;(source:Araport11)
AT5G47730.3	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G47818.1	pseudogene			pseudogene of WPP domain interacting protein 1;(source:Araport11)
AT5G47900.2	protein_coding	Protein of unknown function (DUF1624)		heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G47900.3	protein_coding	Protein of unknown function (DUF1624)		heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G48240.2	protein_coding			Rrp15p protein;(source:Araport11)
AT5G48690.2	protein_coding			ubiquitin-associated (UBA)/TS-N domain protein;(source:Araport11)
AT5G48775.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G48770;(source:Araport11)
AT5G49000.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G49010.2	protein_coding	DNA replication protein-related	Similar to the SLD5 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.	DNA replication protein-like protein;(source:Araport11)
AT5G49110.2	protein_coding			fanconi anemia group I-like protein;(source:Araport11)
AT5G49138.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G49130;(source:Araport11)
AT5G49615.1	other_rna	TAS3b (trans-acting siRNA 3b); other RNA	trans-acting siRNA (tasi-RNA)	other_RNA;(source:Araport11)
AT5G50240.3	protein_coding	protein-l-isoaspartate methyltransferase 2	L-isoaspartyl methyltransferase 2 (PIMT2)gene,  alternatively spliced.	protein-l-isoaspartate methyltransferase 2;(source:Araport11)
AT5G50330.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G50361.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G50562.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G50740.3	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G50950.3	protein_coding	FUMARASE 2	Encodes a fumarase enzyme initially shown to be in the mitochondria through proteomic studies but later shown to be present in the cytosol using an RFP fluorescent protein tag. It appears to be important for the accumulation of fumarate from malate in leaves in the light, and helps to promote nitrogen assimilation under high nitrogen conditions. It does not appear to be necessary for lipid metabolism and seedling growth. Inhibition of fumarate accumulation results in an overall shift in the cold response of leaves, with a complete inhibition of cold acclimation of photosynthesis.	FUMARASE 2;(source:Araport11)
AT5G51230.3	protein_coding	VEFS-Box of polycomb protein	Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.	VEFS-Box of polycomb protein;(source:Araport11)
AT5G51451.1	protein_coding		Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor;(source:Araport11)
AT5G51710.2	protein_coding	K+ efflux antiporter 5	member of Putative potassium proton antiporter family	K+ efflux antiporter 5;(source:Araport11)
AT5G51950.2	protein_coding	Glucose-methanol-choline (GMC) oxidoreductase family protein		Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT5G52272.1	pseudogene		pseudogene of ACYB-2/ACYB-1 (cytochrome b reductase)	pseudogene of Cytochrome b561/ferric reductase transmembrane protein family;(source:Araport11)
AT5G52470.2	protein_coding	fibrillarin 1	Encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.	fibrillarin 1;(source:Araport11)
AT5G52570.2	protein_coding	beta-carotene hydroxylase 2	Converts &#946;-carotene to zeaxanthin via cryptoxanthin.	beta-carotene hydroxylase 2;(source:Araport11)
AT5G52797.1	miRNA_primary_transcript	MIR870a; miRNA	Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAAUUUGGUGUUUCUUCGAUC	microRNA ath-MIR870 precursor;(source:Araport11)
AT5G53048.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G53050;(source:Araport11)
AT5G53220.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G53420.3	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT5G53486.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G53486.3	protein_coding			transmembrane protein;(source:Araport11)
AT5G53486.4	protein_coding			transmembrane protein;(source:Araport11)
AT5G53592.1	protein_coding	FBD-like domain family protein		FBD-like domain family protein;(source:Araport11)
AT5G54045.1	pseudogene		pseudogene of UF3GT	pseudogene of UDP-glucose:flavonoid 3-o-glucosyltransferase;(source:Araport11)
AT5G54130.3	protein_coding	Calcium-binding endonuclease/exonuclease/phosphatase family		Calcium-binding endonuclease/exonuclease/phosphatase family;(source:Araport11)
AT5G54130.4	protein_coding	Calcium-binding endonuclease/exonuclease/phosphatase family		Calcium-binding endonuclease/exonuclease/phosphatase family;(source:Araport11)
AT5G54165.1	protein_coding			Avr9/Cf-9 rapidly elicited protein;(source:Araport11)
AT5G54569.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G54570;(source:Araport11)
AT5G54760.2	protein_coding	Translation initiation factor SUI1 family protein		Translation initiation factor SUI1 family protein;(source:Araport11)
AT5G54920.2	protein_coding			polyadenylate-binding protein interacting protein;(source:Araport11)
AT5G55040.2	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT5G55125.1	protein_coding	Ribosomal protein L31		Ribosomal protein L31;(source:Araport11)
AT5G55125.2	protein_coding	Ribosomal protein L31		Ribosomal protein L31;(source:Araport11)
AT5G55508.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G55600.2	protein_coding	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein		Agenet and bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT5G55856.1	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G56452.2	protein_coding	FBD-like domain family protein		FBD-like domain family protein;(source:Araport11)
AT5G56544.1	pseudogene		pseudogene of arginyl-tRNA synthetase	pseudogene of Arginyl-tRNA synthetase;(source:Araport11)
AT5G56600.2	protein_coding	profilin 3	Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs. Mutants have slightly elongated petioles.	profilin;(source:Araport11)
AT5G57050.2	protein_coding	Protein phosphatase 2C family protein	Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo.	Protein phosphatase 2C family protein;(source:Araport11)
AT5G57290.2	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT5G57290.3	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT5G57535.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G57565.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G57860.4	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G58260.2	protein_coding	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor	Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor;(source:Araport11)
AT5G58300.2	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G58720.2	protein_coding	smr (Small MutS Related) domain-containing protein		smr (Small MutS Related) domain-containing protein;(source:Araport11)
AT5G58720.3	protein_coding	smr (Small MutS Related) domain-containing protein		smr (Small MutS Related) domain-containing protein;(source:Araport11)
AT5G59662.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G59660;(source:Araport11)
AT5G59950.4	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G59990.2	protein_coding	CCT motif family protein		CCT motif family protein;(source:Araport11)
AT5G60142.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G60390.3	protein_coding	GTP binding Elongation factor Tu family protein		GTP binding Elongation factor Tu family protein;(source:Araport11)
AT5G60410.5	protein_coding	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain	Encodes  a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis.  Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation.  signaling	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein;(source:Araport11)
AT5G60600.3	protein_coding	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	Encodes a chloroplast-localized  hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP).  The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP<sup>+</sup> reductase. The mRNA is cell-to-cell mobile.	4-hydroxy-3-methylbut-2-enyl diphosphate synthase;(source:Araport11)
AT5G60810.2	protein_coding	root meristem growth factor 1	Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor 1;(source:Araport11)
AT5G61200.2	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT5G61310.4	protein_coding	Cytochrome c oxidase subunit Vc family protein		Cytochrome c oxidase subunit Vc family protein;(source:Araport11)
AT5G61412.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G61520.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G61920.2	protein_coding			FLX-like protein;(source:Araport11)
AT5G61930.2	protein_coding	Arabidopsis thaliana protein of unknown function (DUF794)	ACCUMULATION OF PHOTOSYSTEM ONE 3	APO RNA-binding protein (DUF794);(source:Araport11)
AT5G61997.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	transmembrane protein;(source:Araport11)
AT5G62100.3	protein_coding	BCL-2-associated athanogene 2	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	BCL-2-associated athanogene 2;(source:Araport11)
AT5G62290.2	protein_coding	nucleotide-sensitive chloride conductance regulator (ICln) family protein		nucleotide-sensitive chloride conductance regulator (ICln) family protein;(source:Araport11)
AT5G62620.2	protein_coding	Galactosyltransferase family protein	Encodes a Golgi-localized hydroxyproline-O-galactosyltransferase.  Mutants display multiple phenotypes including reduced seed coat mucilage and accelerated leaf senescence.	Galactosyltransferase family protein;(source:Araport11)
AT5G62998.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G63300.2	protein_coding	Ribosomal protein S21 family protein		Ribosomal protein S21 family protein;(source:Araport11)
AT5G63370.2	protein_coding	Protein kinase superfamily protein	CDKG1 interacts with the splicing factor RSZ33 to regulate proper splicing of Cals5 Pre-mRNA.	Protein kinase superfamily protein;(source:Araport11)
AT5G63370.3	protein_coding	Protein kinase superfamily protein	CDKG1 interacts with the splicing factor RSZ33 to regulate proper splicing of Cals5 Pre-mRNA.	Protein kinase superfamily protein;(source:Araport11)
AT5G63540.2	protein_coding	Domain of unknown function (DUF1767)	Encodes RMI1.  Suppresses somatic crossovers.  Essential for resolution of meiotic recombination intermediates.	recQ-mediated instability protein (DUF1767);(source:Araport11)
AT5G64330.2	protein_coding	Phototropic-responsive NPH3 family protein	Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1. Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light.  Protein contains multiple protein-protein interaction domains.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G64395.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G64401.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G64501.1	pseudogene			pseudogene of pyrophosphorylase 6;(source:Araport11)
AT5G64540.2	protein_coding			mucin-like protein;(source:Araport11)
AT5G65050.3	protein_coding	AGAMOUS-like 31	Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time.  Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.	AGAMOUS-like 31;(source:Araport11)
AT5G65070.2	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G65090.2	protein_coding	DNAse I-like superfamily protein	Encodes a protein involved in root hair morphogenesis and tip growth.  Required for restricting both the size of the root-hair initiation site and the width of the root hairs during the transition to tip growth, but, apparently, is not required for normal subsequent tip growth.	DNAse I-like superfamily protein;(source:Araport11)
AT5G65140.2	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G65274.1	protein_coding	ARP2/3 complex 16 kDa subunit (p16-Arc)		ARP2/3 complex 16 kDa subunit (p16-Arc);(source:Araport11)
AT5G65440.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G65609.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G66053.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G66210.4	protein_coding	calcium-dependent protein kinase 28	Calcium Dependent Protein Kinase. Functions in the BIK1 innate immune response pathway.	calcium-dependent protein kinase 28;(source:Araport11)
AT5G66558.1	antisense_long_noncoding_rna	other RNA		Natural antisense transcript overlaps with AT5G66560;(source:Araport11)
AT5G66600.2	protein_coding	Protein of unknown function, DUF547		electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G66600.3	protein_coding	Protein of unknown function, DUF547		electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G66607.1	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT5G66631.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G66816.1	protein_coding			DNA-directed RNA polymerase II subunit RPB1-like protein;(source:Araport11)
AT5G67440.2	protein_coding	Phototropic-responsive NPH3 family protein	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590).  Involved in auxin-mediated organogenesis.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AOP2-Cvi	protein_coding			
AOP3	protein_coding			
EIL4	unknown			
MC1	unknown			
HAP7	unknown			
GSQ1	unknown			
GSQ3	unknown			
CND41	unknown			
LIKE23	unknown			
SFD2	unknown		The identity of the SFD2 gene is not known. However, lipid profiling indicates that the sfd2 allele affects the desaturation of 16:0 acyl chains present in MGD and DGD to 16:1. Mutant alleles suppress ssi2-conferred dwarfing and lesion formation.	The identity of the SFD2 gene is not known. However, lipid profiling indicates that the sfd2 allele affects the desaturation of 16:0 acyl chains present in MGD and DGD to 16:1
OSHB1	unknown			
OSHB4	unknown			
YB3	unknown			
EMB1000	unknown			
EMB1001	unknown			
EMB1003	unknown			
EMB1004	unknown			
EMB1005	unknown			
EMB1007	unknown			
EMB1010	unknown			
EMB1012	unknown			
EMB1013	unknown			
EMB1014	unknown			
EMB1015	unknown			
EMB1016	unknown			
EMB1017	unknown			
EMB1018	unknown			
EMB1020	unknown			
EMB1021	unknown			
EMB1022	unknown			
EMB1023	unknown			
EMB1026	unknown			
EMB1028	unknown			
EMB1029	unknown			
EMB1031	unknown			
EMB1032	unknown			
EMB1033	unknown			
EMB1034	unknown			
EMB1036	unknown			
EMB1037	unknown			
EMB1038	unknown			
EMB1039	unknown			
EMB1040	unknown			
EMB1042	unknown			
EMB1043	unknown			
EMB1044	unknown			
EMB1045	unknown			
EMB1046	unknown			
EMB1048	unknown			
EMB1049	unknown			
EMB1051	unknown			
EMB1053	unknown			
EMB1054	unknown			
EMB1057	unknown			
EMB1058	unknown			
EMB1059	unknown			
EMB1060	unknown			
EMB1061	unknown			
EMB1063	unknown			
EMB1064	unknown			
EMB1065	unknown			
EMB1066	unknown			
EMB1068	unknown			
EMB1071	unknown			
EMB1073	unknown			
EMB1074	unknown			
EMB1076	unknown			
EMB1077	unknown			
EMB1079	unknown			
EMB1081	unknown			
EMB1082	unknown			
EMB1084	unknown			
EMB1086	unknown			
EMB1087	unknown			
EMB1088	unknown			
EMB1089	unknown			
EMB1090	unknown			
EMB1091	unknown			
EMB1092	unknown			
EMB1093	unknown			
EMB1095	unknown			
EMB1096	unknown			
EMB1098	unknown			
EMB1099	unknown			
EMB1100	unknown			
EMB1101	unknown			
EMB1102	unknown			
EMB1103	unknown			
EMB1105	unknown			
EMB1106	unknown			
EMB1107	unknown			
EMB1108	unknown			
EMB1110	unknown			
EMB1111	unknown			
EMB1112	unknown			
EMB1113	unknown			
EMB1116	unknown			
EMB1117	unknown			
EMB1118	unknown			
EMB1119	unknown			
EMB1121	unknown			
EMB1122	unknown			
EMB1123	unknown			
EMB1125	unknown			
EMB1128	unknown			
EMB1131	unknown			
EMB1132	unknown			
EMB1133	unknown			
EMB1134	unknown			
EMB1137	unknown			
EMB1139	unknown			
EMB1140	unknown			
EMB1141	unknown			
EMB1142	unknown			
EMB1143	unknown			
EMB1145	unknown			
EMB1148	unknown			
EMB1149	unknown			
EMB1151	unknown			
EMB1154	unknown			
EMB1155	unknown			
EMB1156	unknown			
EMB1157	unknown			
EMB1158	unknown			
EMB1159	unknown			
EMB1160	unknown			
EMB1161	unknown			
EMB1163	unknown			
EMB1164	unknown			
EMB1165	unknown			
EMB1166	unknown			
EMB1167	unknown			
EMB1168	unknown			
EMB1169	unknown			
EMB1170	unknown			
EMB1171	unknown			
EMB1172	unknown			
EMB1173	unknown			
EMB1174	unknown			
EMB1176	unknown			
EMB1177	unknown			
EMB1178	unknown			
EMB1179	unknown			
EMB1182	unknown			
EMB1183	unknown			
EMB1184	unknown			
EMB1185	unknown			
EMB1188	unknown			
EMB1189	unknown			
EMB1190	unknown			
EMB1191	unknown			
EMB1192	unknown			
EMB1193	unknown			
EMB1194	unknown			
EMB1195	unknown			
EMB1197	unknown			
EMB1198	unknown			
EMB1199	unknown			
EMB1200	unknown			
EMB1203	unknown			
EMB1204	unknown			
EMB1205	unknown			
EMB1206	unknown			
EMB1207	unknown			
EMB1208	unknown			
EMB1209	unknown			
EMB1210	unknown			
EMB1212	unknown			
EMB1213	unknown			
EMB1214	unknown			
EMB1215	unknown			
EMB1216	unknown			
EMB1217	unknown			
EMB1218	unknown			
EMB1221	unknown			
EMB1222	unknown			
EMB1223	unknown			
EMB1224	unknown			
EMB1227	unknown			
EMB1228	unknown			
EMB1229	unknown			
EMB1230	unknown			
EMB1231	unknown			
EMB1232	unknown			
EMB1233	unknown			
EMB1234	unknown			
EMB1235	unknown			
EMB1237	unknown			
EMB1239	unknown			
EMB1240	unknown			
EMB1244	unknown			
EMB1246	unknown			
EMB1247	unknown			
EMB1248	unknown			
EMB1249	unknown			
EMB1250	unknown			
EMB1251	unknown			
EMB1252	unknown			
EMB1254	unknown			
EMB1255	unknown			
EMB1256	unknown			
EMB1257	unknown			
EMB1258	unknown			
EMB1259	unknown			
EMB1260	unknown			
EMB1261	unknown			
EMB1262	unknown			
EMB1264	unknown			
EMB1266	unknown			
EMB1267	unknown			
EMB1269	unknown			
EMB1271	unknown			
EMB1272	unknown			
EMB1274	unknown			
EMB1277	unknown			
EMB1278	unknown			
EMB1279	unknown			
EMB1280	unknown			
EMB1281	unknown			
EMB1282	unknown			
EMB1283	unknown			
EMB1284	unknown			
EMB1285	unknown			
EMB1286	unknown			
EMB1287	unknown			
EMB1288	unknown			
EMB1292	unknown			
EMB1293	unknown			
EMB1294	unknown			
EMB1295	unknown			
EMB1296	unknown			
EMB1297	unknown			
EMB1298	unknown			
EMB1300	unknown			
EMB1301	unknown			
EMB1302	unknown			
EMB1304	unknown			
EMB1305	unknown			
EMB1306	unknown			
EMB1307	unknown			
EMB1308	unknown			
EMB1309	unknown			
EMB1310	unknown			
EMB1311	unknown			
EMB1312	unknown			
EMB1313	unknown			
EMB1314	unknown			
EMB1315	unknown			
EMB1316	unknown			
EMB1317	unknown			
EMB1318	unknown			
EMB1319	unknown			
EMB1321	unknown			
EMB1322	unknown			
EMB1323	unknown			
EMB1324	unknown			
EMB1325	unknown			
EMB1327	unknown			
EMB1328	unknown			
EMB1329	unknown			
EMB1330	unknown			
EMB1331	unknown			
EMB1332	unknown			
EMB1333	unknown			
EMB1334	unknown			
EMB1335	unknown			
EMB1336	unknown			
EMB1337	unknown			
EMB1338	unknown			
EMB1339	unknown			
EMB1340	unknown			
EMB1341	unknown			
EMB1342	unknown			
EMB1343	unknown			
EMB1346	unknown			
EMB1347	unknown			
EMB1348	unknown			
EMB1350	unknown			
EMB1351	unknown			
EMB1352	unknown			
EMB1355	unknown			
EMB1356	unknown			
EMB1360	unknown			
EMB1362	unknown			
EMB1363	unknown			
EMB1364	unknown			
EMB1366	unknown			
EMB1368	unknown			
EMB1369	unknown			
EMB1370	unknown			
EMB1372	unknown			
EMB1376	unknown			
EMB1377	unknown			
EMB1378	unknown			
EMB1380	unknown			
EMB1382	unknown			
EMB1383	unknown			
EMB1384	unknown			
EMB1385	unknown			
EMB1386	unknown			
EMB1387	unknown			
EMB1388	unknown			
EMB1389	unknown			
EMB1390	unknown			
EMB1392	unknown			
EMB1394	unknown			
EMB1396	unknown			
EMB1397	unknown			
EMB1398	unknown			
EMB1399	unknown			
EMB1400	unknown			
EMB1402	unknown			
EMB1403	unknown			
EMB1404	unknown			
EMB1405	unknown			
EMB1406	unknown			
EMB1409	unknown			
EMB1410	unknown			
EMB1411	unknown			
EMB1412	unknown			
EMB1416	unknown			
EMB1418	unknown			
EMB1419	unknown			
EMB1422	unknown			
EMB1423	unknown			
EMB1425	unknown			
EMB1426	unknown			
EMB1429	unknown			
EMB1430	unknown			
EMB1431	unknown			
EMB1432	unknown			
EMB1433	unknown			
EMB1434	unknown			
EMB1435	unknown			
EMB1437	unknown			
EMB1438	unknown			
EMB1439	unknown			
EMB1442	unknown			
EMB1443	unknown			
EMB1445	unknown			
EMB1446	unknown			
EMB1447	unknown			
EMB1448	unknown			
EMB1449	unknown			
EMB1450	unknown			
EMB1451	unknown			
EMB1454	unknown			
EMB1455	unknown			
EMB1456	unknown			
EMB1457	unknown			
EMB1458	unknown			
EMB1460	unknown			
EMB1461	unknown			
EMB1463	unknown			
EMB1465	unknown			
EMB1468	unknown			
EMB1469	unknown			
EMB1470	unknown			
EMB1471	unknown			
EMB1472	unknown			
EMB1475	unknown			
EMB1477	unknown			
EMB1478	unknown			
EMB1479	unknown			
EMB1480	unknown			
EMB1481	unknown			
EMB1482	unknown			
EMB1483	unknown			
EMB1484	unknown			
EMB1485	unknown			
EMB1487	unknown			
EMB1488	unknown			
EMB1489	unknown			
EMB1490	unknown			
EMB1491	unknown			
EMB1492	unknown			
EMB1493	unknown			
EMB1494	unknown			
EMB1495	unknown			
EMB1496	unknown			
EMB1497	unknown			
EMB1498	unknown			
EMB1499	unknown			
EMB1502	unknown			
EMB1503	unknown			
EMB1504	unknown			
EMB1505	unknown			
EMB1506	unknown			
EMB1508	unknown			
EMB1509	unknown			
EMB1510	unknown			
EMB1511	unknown			
EMB1512	unknown			
EMB1514	unknown			
EMB1515	unknown			
EMB1516	unknown			
EMB1517	unknown			
EMB1518	unknown			
EMB1519	unknown			
EMB1520	unknown			
EMB1521	unknown			
EMB1522	unknown			
EMB1523	unknown			
EMB1524	unknown			
EMB1525	unknown			
EMB1527	unknown			
EMB1528	unknown			
EMB1529	unknown			
EMB1530	unknown			
EMB1531	unknown			
EMB1533	unknown			
EMB1534	unknown			
EMB1536	unknown			
EMB1537	unknown			
EMB1538	unknown			
EMB1539	unknown			
EMB1540	unknown			
EMB1541	unknown			
EMB1542	unknown			
EMB1543	unknown			
EMB1544	unknown			
EMB1546	unknown			
EMB1548	unknown			
EMB1549	unknown			
EMB1550	unknown			
EMB1551	unknown			
EMB1552	unknown			
EMB1553	unknown			
EMB1554	unknown			
EMB1555	unknown			
EMB1556	unknown			
EMB1557	unknown			
EMB1559	unknown			
EMB1560	unknown			
EMB1562	unknown			
EMB1564	unknown			
EMB1566	unknown			
EMB1567	unknown			
EMB1568	unknown			
EMB1569	unknown			
EMB1570	unknown			
EMB1571	unknown			
EMB1572	unknown			
EMB1574	unknown			
EMB1575	unknown			
EMB1576	unknown			
EMB1577	unknown			
EMB1578	unknown			
EMB1580	unknown			
EMB1581	unknown			
EMB1582	unknown			
EMB1583	unknown			
EMB1584	unknown			
EMB1585	unknown			
EMB1588	unknown			
EMB1589	unknown			
EMB1590	unknown			
EMB1591	unknown			
EMB1592	unknown			
EMB1593	unknown			
EMB1594	unknown			
EMB1595	unknown			
EMB1596	unknown			
EMB1597	unknown			
EMB1598	unknown			
EMB1600	unknown			
EMB1601	unknown			
EMB1602	unknown			
EMB1603	unknown			
EMB1604	unknown			
EMB1605	unknown			
EMB1606	unknown			
EMB1607	unknown			
EMB1608	unknown			
EMB1609	unknown			
EMB1610	unknown			
EMB1612	unknown			
EMB1613	unknown			
EMB1614	unknown			
EMB1615	unknown			
EMB1616	unknown			
EMB1617	unknown			
EMB1618	unknown			
EMB1619	unknown			
EMB1620	unknown			
EMB1621	unknown			
EMB1622	unknown			
EMB1625	unknown			
EMB1626	unknown			
EMB1627	unknown			
EMB1628	unknown			
EMB1630	unknown			
EMB1631	unknown			
EMB1632	unknown			
EMB1633	unknown			
EMB1634	unknown			
EMB1636	unknown			
EMB1638	unknown			
EMB1639	unknown			
EMB1641	unknown			
EMB1642	unknown			
EMB1643	unknown			
EMB1645	unknown			
EMB1646	unknown			
EMB1647	unknown			
EMB1648	unknown			
EMB1650	unknown			
EMB1651	unknown			
EMB1652	unknown			
EMB1653	unknown			
EMB1654	unknown			
EMB1655	unknown			
EMB1658	unknown			
EMB1659	unknown			
EMB1660	unknown			
EMB1661	unknown			
EMB1662	unknown			
EMB1664	unknown			
EMB1666	unknown			
EMB1667	unknown			
EMB1668	unknown			
EMB1669	unknown			
EMB1671	unknown			
EMB1672	unknown			
EMB1673	unknown			
EMB1675	unknown			
EMB1676	unknown			
EMB1677	unknown			
EMB1678	unknown			
EMB1679	unknown			
EMB1680	unknown			
EMB1681	unknown			
EMB1683	unknown			
EMB1684	unknown			
EMB1685	unknown			
EMB1689	unknown			
EMB1690	unknown			
EMB1694	unknown			
EMB1696	unknown			
EMB1697	unknown			
EMB1698	unknown			
EMB1699	unknown			
EMB1700	unknown			
EMB1701	unknown			
EMB1704	unknown			
EMB1708	unknown			
EMB1710	unknown			
EMB1711	unknown			
EMB1712	unknown			
EMB1713	unknown			
EMB1714	unknown			
EMB1715	unknown			
EMB1718	unknown			
EMB1720	unknown			
EMB1721	unknown			
EMB1722	unknown			
EMB1723	unknown			
EMB1724	unknown			
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EMB1988	unknown			
EMB1991	unknown			
EMB1992	unknown			
EMB1993	unknown			
EMB1994	unknown			
EMB2006	unknown			
EMB2007	unknown			
EMB2009	unknown			
EMB2012	unknown			
EMB2013	unknown			
EMB2014	unknown			
EMB2015	unknown			
EMB2018	unknown			
EMB2019	unknown			
EMB2020	unknown			
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EMB2400	unknown			
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EMB2409	unknown			
EMB2415	unknown			
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EMB2500	unknown			
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EMB2517	unknown			
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EMB2560	unknown			
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EMB2606	unknown			
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EMB2616	unknown			
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EMB2627	unknown			
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EMB2640	unknown			
EMB2641	unknown			
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EMB2646	unknown			
EMB2647	unknown			
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EMB2650	unknown			
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EMB2653	unknown			
EMB2655	unknown			
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EMB2660	unknown			
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EMB2662	unknown			
EMB2664	unknown			
EMB2666	unknown			
EMB2667	unknown			
EMB2669	unknown			
EMB2671	unknown			
EMB2673	unknown			
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EMB2676	unknown			
EMB2677	unknown			
EMB2678	unknown			
EMB2679	unknown			
EMB2680	unknown			
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EMB2685	unknown			
EMB2686	unknown			
EMB2687	unknown			
EMB2688	unknown			
EMB2689	unknown			
EMB2690	unknown			
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EMB2699	unknown			
EMB2701	unknown			
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EMB2711	unknown			
EMB2937	unknown			
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EMB2940	unknown			
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EMB2960	unknown			
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EMB2963	unknown			
EMB2964	unknown			
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EMB2966	unknown			
EMB2967	unknown			
EMB2968	unknown			
EMB2969	unknown			
EMB2971	unknown			
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EMB2973	unknown			
EMB2974	unknown			
EMB2975	unknown			
EMB2976	unknown			
EMB2977	unknown			
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EMB2979	unknown			
EMB2980	unknown			
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EMB2982	unknown			
EMB2983	unknown			
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EMB2985	unknown			
EMB2986	unknown			
EMB2987	unknown			
EMB2988	unknown			
EMB2989	unknown			
EMB2990	unknown			
EMB2991	unknown			
EMB2992	unknown			
EMB2993	unknown			
EMB2994	unknown			
EMB2995	unknown			
EMB2996	unknown			
EMB2997	unknown			
EMB2998	unknown			
EMB2999	unknown			
PDE101	unknown			
PDE103	unknown			
PDE106	unknown			
PDE107	unknown			
PDE109	unknown			
PDE110	unknown			
PDE112	unknown			
PDE113	unknown			
PDE114	unknown			
PDE115	unknown			
PDE116	unknown			
PDE117	unknown			
PDE118	unknown			
PDE119	unknown			
PDE123	unknown			
PDE124	unknown			
PDE128	unknown			
PDE130	unknown			
PDE131	unknown			
PDE133	unknown			
PDE134	unknown			
PDE136	unknown			
PDE137	unknown			
PDE138	unknown			
PDE139	unknown			
PDE140	unknown			
PDE141	unknown			
PDE142	unknown			
PDE143	unknown			
PDE144	unknown			
PDE145	unknown			
PDE146	unknown			
PDE147	unknown			
PDE148	unknown			
PDE150	unknown			
PDE151	unknown			
PDE152	unknown			
PDE153	unknown			
PDE154	unknown			
PDE155	unknown			
PDE156	unknown			
PDE157	unknown			
PDE158	unknown			
PDE159	unknown			
PDE162	unknown			
PDE163	unknown			
PDE165	unknown			
PDE167	unknown			
PDE169	unknown			
PDE171	unknown			
PDE172	unknown			
PDE173	unknown			
PDE175	unknown			
PDE176	unknown			
PDE177	unknown			
PDE179	unknown			
PDE180	unknown			
PDE182	unknown			
PDE183	unknown			
PDE185	unknown			
PDE187	unknown			
PDE189	unknown			
PDE192	unknown			
PDE195	unknown			
PDE198	unknown			
PDE199	unknown			
PDE200	unknown			
PDE202	unknown			
PDE203	unknown			
PDE204	unknown			
PDE206	unknown			
PDE207	unknown			
PDE211	unknown			
PDE212	unknown			
PDE213	unknown			
PDE214	unknown			
PDE215	unknown			
PDE216	unknown			
PDE217	unknown			
PDE219	unknown			
PDE220	unknown			
PDE221	unknown			
PDE222	unknown			
PDE224	unknown			
PDE227	unknown			
PDE228	unknown			
PDE231	unknown			
PDE232	unknown			
PDE233	unknown			
PDE234	unknown			
PDE235	unknown			
PDE236	unknown			
PDE238	unknown			
PDE239	unknown			
PDE241	unknown			
PDE244	unknown			
PDE245	unknown			
PDE248	unknown			
PDE250	unknown			
PDE252	unknown			
PDE253	unknown			
PDE254	unknown			
PDE256	unknown			
PDE257	unknown			
PDE258	unknown			
PDE259	unknown			
PDE260	unknown			
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PDE265	unknown			
PDE266	unknown			
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PDE268	unknown			
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PDE270	unknown			
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PDE274	unknown			
PDE275	unknown			
PDE276	unknown			
PDE278	unknown			
PDE279	unknown			
PDE280	unknown			
PDE281	unknown			
PDE284	unknown			
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PDE289	unknown			
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PDE297	unknown			
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PDE302	unknown			
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PDE306	unknown			
PDE307	unknown			
PDE308	unknown			
PDE350	unknown			
TITANA	unknown			
TITANB	unknown			
TITAND	unknown			
TITANE	unknown			
NUP107	unknown			
ST6	unknown			
LF1	unknown			
LF2	unknown			
LIKE61	unknown			
ANJ1	unknown			
BEAT1	unknown			
BIL3	unknown			
BIP89	unknown			
BOR7	unknown			
CIL1	unknown			
CY1	unknown			
DAL14	unknown			
EL25	unknown			
ELC1	unknown			
FN219	unknown			
FSL1	unknown			
GSD1	unknown			
HIP1	unknown			
HRS2	unknown			
HRS3	unknown			
HTX2	unknown			
ING1	unknown			
LS10	unknown			
LVC17	unknown			
LVC28	unknown			
MAC4	unknown			
MTV4	unknown			
NM6	unknown			
PIC30	unknown			
PJAZ1	unknown			
PMG3	unknown			
PRBP1	unknown			
PRBP2	unknown			
PVIP1	unknown			
PVIP2	unknown			
RCI5	unknown			
RLR50	unknown			
RTE3	unknown			
RTLS1	unknown			
RTLS2	unknown			
SAG26	unknown			
SD5	unknown			
SOI1	unknown			
SOV1	unknown			
STH1	unknown			
SUF5	unknown			
SUP6	unknown			
TMD3	unknown			
UGT5	unknown			
UXE4	unknown			
ZF6	unknown			
ZF7	unknown			
ACRE231	unknown			
CAI4	unknown			
CLE46	unknown			
CSHL1	unknown			
DAB4	unknown			
DRG3	unknown			
FAQ2	unknown			
FAQ3	unknown			
FM5	unknown			
FN10	unknown			
LPH1	unknown			
MAC1	unknown			
MQN23	unknown			
OLD101	unknown			
RCD8	unknown			
RGL51	unknown			
RGL52	unknown			
SBT2	unknown			
SPD2	unknown			
SRE2	unknown			
TPS28	unknown			
WSD10	unknown			
ZNT2	unknown			
ZTP1	unknown			
ATR1	protein_coding			
DSTM1	unknown			
IL7	unknown			
OX3	unknown			
OX4	unknown			
OX5	unknown			
RSW13	unknown			
HAP10	unknown			
HAP11	unknown			
HAP14	unknown			
HAP16	unknown			
HAP18	unknown			
HAP19	unknown			
HAP20	unknown			
HAP21	unknown			
HAP22	unknown			
HAP23	unknown			
HAP24	unknown			
HAP25	unknown			
HAP26	unknown			
HAP28	unknown			
HAP3	unknown			
HAP30	unknown			
HAP9	unknown			
KNS1	protein_coding		Involved in pollen exine formation.	
KNS11	protein_coding		Involved in pollen exine formation.	
KNS5	protein_coding		Involved in pollen exine formation.	
KNS6	protein_coding		Involved in pollen exine formation.	
KNS7	protein_coding		Involved in pollen exine formation.	
KNS8	protein_coding		Involved in pollen exine formation.	
KNS9	protein_coding		Involved in pollen exine formation.	
KNS10	protein_coding		Involved in pollen exine formation.	
KNS3	protein_coding		Involved in pollen exine formation.	
KNS12	protein_coding		Involved in pollen exine formation.	
HAP27	unknown			
HAP29	unknown			
HAP31	unknown			
CYP20	unknown			
nws1	unknown		nws1 mutant fails to wilt after inoculation with Ralstonia solanacearum	
AtAATM2	unknown			
AtABA4	unknown			
AtACS1	unknown			
AtADF2	unknown			
AtADF3	unknown			
AtADF7	unknown			
AtADF8	unknown			
AtADF9	unknown			
AtAHM2	unknown			
AtAHM3	unknown			
AtAHM4	unknown			
AtAPG4	unknown			
AtAPG8	unknown			
AtARI15	unknown			
AtARI2	unknown			
AtARI8	unknown			
AtARK1	unknown			
AtARK3	unknown			
AtBE1	unknown			
AtBLH6	unknown			
AtCB1	unknown			
AtCBP54	unknown			
AtCDCP1	unknown			
AtCDCP2	unknown			
AtCDPD6	unknown			
AtCKT1	unknown			
AtCNBT1	unknown			
AtCNBT2	unknown			
AtCOIK1	unknown			
AtCPK3	unknown			
AtCPRF2	unknown			
AtCPT4	unknown			
AtCPT5	unknown			
AtCPT9	unknown			
AtCR20	unknown			
AtCSL4	unknown			
AtCYCA2	unknown			
AtCYP20	unknown			
AtDAD2	unknown			
AtDAG1	unknown			
AtDAG2	unknown			
AtDAG3	unknown			
AtDAG5	unknown			
AtDUO1	unknown			
AtEN101	unknown			
AtFBL3	unknown			
AtFH12	unknown			
AtFKBP70	unknown			
AtFLP1	unknown			
AtFLP3	unknown			
AtFLS3	unknown			
AtGA2	unknown			
AtGA20	unknown			
AtGCC7	unknown			
AtGFG1	unknown			
AtGL5	unknown			
AtGMGT10	unknown			
AtGRR1	unknown			
AtGT11	unknown			
AtGUT15	unknown			
AtHO2	unknown			
AtHO4	unknown			
AtHSP92	unknown			
AtHSP98	unknown			
AtIDD10	unknown			
AtIMPL1	unknown			
AtIMPL2	unknown			
AtIRE1	unknown			
AtLEJ2	unknown			
AtLIP5	unknown			
AtLLP1	unknown			
AtLOG6	unknown			
AtMAF1	unknown			
AtMAF2	unknown			
AtMGT8	unknown			
AtMIS4	unknown			
AtMSRB1	unknown			
AtNAT9	unknown			
AtNDR1	unknown			
AtNIC4	unknown			
AtNMP1	unknown			
AtNPCT1	unknown			
AtNSF1	unknown			
AtNUDX12	unknown			
AtOEP16	unknown			
AtORK1	unknown			
AtOSR1	unknown			
AtOSR2	unknown			
AtOSR4	unknown			
AtOSR7	unknown			
AtOSR8	unknown			
AtOSR9	unknown			
AtPAC1	unknown			
AtPAC2	unknown			
AtPAC3	unknown			
AtPAPK1	unknown			
AtPDC2	unknown			
AtPDC3	unknown			
AtPDR22	unknown			
AtPDR42	unknown			
AtPEPC2	unknown			
AtPEPC3	unknown			
AtPERK4	unknown			
AtPERK6	unknown			
AtPGI1	unknown			
AtPHO3	unknown			
AtPHO9	unknown			
AtPOP2	unknown			
AtPOP3	unknown			
AtPRP5	unknown			
AtPS2	unknown			
AtPS3	unknown			
AtPSP1	unknown			
AtPSP2	unknown			
AtPSP3	unknown			
AtPTEN2	unknown			
AtPTEN3	unknown			
AtPTI1	unknown			
AtPXI1	unknown			
AtPXI2	unknown			
AtRAD23	unknown			
AtRAD30	unknown			
AtRBD1	unknown			
AtRBD2	unknown			
AtRH14	unknown			
AtRHA1	unknown			
AtRNR2	unknown			
AtRRP41	unknown			
AtSAE1	unknown			
AtSAT2	unknown			
AtSDK1	unknown			
AtSIG4	unknown			
AtSK3	unknown			
AtSMT1	unknown			
AtSMT2	unknown			
AtSNP33	unknown			
AtSPPL5	unknown			
AtSRC1	unknown			
AtSUMO4	unknown			
AtSUMO8	unknown			
AtSUP35	unknown			
AtSUP45	unknown			
AtSUT5	unknown			
AtSUT6	unknown			
AtSUT7	unknown			
AtSWI1	unknown			
AtTCP9	unknown			
AtUBP15	unknown			
AtUBP16	unknown			
AtUBP17	unknown			
AtUBP19	unknown			
AtUBP7	unknown			
AtUBP9	unknown			
AtUEV1	unknown			
AtVTI1	unknown			
AtVTI2	unknown			
AtYKY62	unknown			
TF1	unknown			
TF2	unknown			
LIKE19	unknown			
PDIL2	unknown			
AtSSL7	unknown			
GS8	unknown			
SODC1	unknown			
SODC2	unknown			
SSL5	unknown			
VN	protein_coding		Vitronectin-like protein present in cell walls. Not involved in receptor-specific bacterial attachment.	
YC2	unknown			
LMS1	unknown			
AT1G01160.2	protein_coding	GRF1-interacting factor 2	Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA	GRF1-interacting factor 2;(source:Araport11)
AT1G01290.2	protein_coding	cofactor of nitrate reductase and xanthine dehydrogenase 3	COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined, except in roots. Appears to have targeting signals for chloroplast or mitochondria	cofactor of nitrate reductase and xanthine dehydrogenase 3;(source:Araport11)
AT1G01950.2	protein_coding	armadillo repeat kinesin 2	Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.	armadillo repeat kinesin 2;(source:Araport11)
AT1G01950.3	protein_coding	armadillo repeat kinesin 2	Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.	armadillo repeat kinesin 2;(source:Araport11)
AT1G02681.1	pseudogene		Pseudogene of AT4G02160	pseudogene of cotton fiber protein;(source:Araport11)
AT1G04080.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a U1 small nuclear ribonucleoprotein (snRNP) factor involved in alternative splicing.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G04457.1	pseudogene		Pseudogene of AT2G33450; 50S ribosomal protein L28, chloroplast (CL28)	pseudogene of hypothetical protein;(source:Araport11)
AT1G05000.2	protein_coding	Phosphotyrosine protein phosphatases superfamily protein	Encodes an atypical dual-speci&#64257;city phosphatase.	Phosphotyrosine protein phosphatases superfamily protein;(source:Araport11)
AT1G05061.1	pseudogene		Pseudogene of AT2G32630; pentatricopeptide (PPR) repeat-containing protein	pseudogene of Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G05400.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G05550.2	protein_coding	Protein of unknown function (DUF295)	DUF295 domain protein of unknown function. Expressed in ovule integuments and nucellus.	hypothetical protein (DUF295);(source:Araport11)
AT1G05670.2	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G05960.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G06148.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G06570.2	protein_coding	phytoene desaturation 1	Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.	4-hydroxyphenylpyruvate dioxygenase;(source:Araport11)
AT1G06630.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G06630.3	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G06640.3	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase The mRNA is cell-to-cell mobile.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G07010.3	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT1G07390.2	protein_coding	receptor like protein 1		receptor like protein 1;(source:Araport11)
AT1G07390.3	protein_coding	receptor like protein 1		receptor like protein 1;(source:Araport11)
AT1G07885.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G07910.2	protein_coding	RNAligase	Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains,  an N-terminal ligase component and a C-terminal 5'-kinase/2',3'-cyclic phosphodiesterase  (CPD) component that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo.	RNAligase;(source:Araport11)
AT1G08845.2	protein_coding	Ribosomal L18p/L5e family protein		Ribosomal L18p/L5e family protein;(source:Araport11)
AT1G10220.2	protein_coding			ZCF37;(source:Araport11)
AT1G10419.1	pseudogene		Pseudogene of AT1G10419	pseudogene of aminophospholipid ATPase 3;(source:Araport11)
AT1G11120.2	protein_coding			CTTNBP 2 amino-terminal-like protein;(source:Araport11)
AT1G11360.3	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT1G11570.2	protein_coding	NTF2-like		NTF2-like protein;(source:Araport11)
AT1G11593.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G11905.2	protein_coding	B-cell receptor-associated protein 31-like 		B-cell receptor-associated protein 31-like protein;(source:Araport11)
AT1G12290.2	protein_coding	Disease resistance protein (CC-NBS-LRR class) family		Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G12810.2	protein_coding	proline-rich family protein		proline-rich family protein;(source:Araport11)
AT1G13050.2	protein_coding			proline-rich receptor-like kinase;(source:Araport11)
AT1G13485.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G13990.2	protein_coding			plant/protein;(source:Araport11)
AT1G13990.3	protein_coding			plant/protein;(source:Araport11)
AT1G14315.2	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G14520.2	protein_coding	myo-inositol oxygenase 1	Encodes MIOX1.  Belongs to  myo-inositol oxygenase gene family.	myo-inositol oxygenase 1;(source:Araport11)
AT1G14620.2	protein_coding	decoy		decoy;(source:Araport11)
AT1G14642.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G14760.2	protein_coding	KNOX Arabidopsis thaliana meinox	Encodes a novel Arabidopsis KNOX gene that encodes a MEINOX domain but lacks the homeodomain and interacts with TALE-class homeodomain proteins to modulate their activities	KNOX meinox protein;(source:Araport11)
AT1G14760.3	protein_coding	KNOX Arabidopsis thaliana meinox	Encodes a novel Arabidopsis KNOX gene that encodes a MEINOX domain but lacks the homeodomain and interacts with TALE-class homeodomain proteins to modulate their activities	KNOX meinox protein;(source:Araport11)
AT1G15120.2	protein_coding	Ubiquinol-cytochrome C reductase hinge protein		Ubiquinol-cytochrome C reductase hinge protein;(source:Araport11)
AT1G15240.2	protein_coding	Phox-associated domain;Phox-like;Sorting nexin, C-terminal	Encodes a member of the Arabidopsis sorting nexin family.	phox (PX) domain-containing protein;(source:Araport11)
AT1G15860.2	protein_coding	Domain of unknown function (DUF298)		defective in cullin neddylation protein (DUF298);(source:Araport11)
AT1G16825.1	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT1G17090.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G17350.2	protein_coding	NADH:ubiquinone oxidoreductase intermediate-associated protein 30		NADH:ubiquinone oxidoreductase intermediate-associated protein 30;(source:Araport11)
AT1G17455.2	protein_coding	ELF4-like 4		ELF4-like 4;(source:Araport11)
AT1G18191.1	pseudogene		Pseudogene of AT1G18200; AtRABA6b (Arabidopsis Rab GTPase homolog A6b); GTP binding	pseudogene of Rab GTPase-like A1I protein;(source:Araport11)
AT1G18390.2	protein_coding	Encodes a plasma membrane localized protein involved in ABA signaling.		Serine/Threonine kinase family catalytic domain protein;(source:Araport11)
AT1G18700.3	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G18870.2	protein_coding	isochorismate synthase 2	Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410).	isochorismate synthase 2;(source:Araport11)
AT1G19700.2	protein_coding	BEL1-like homeodomain 10	Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.	BEL1-like homeodomain 10;(source:Araport11)
AT1G20657.1	pseudogene		Pseudogene of AT3G61340; F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G21080.2	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G21286.1	pseudogene		Pseudogene of AT1G21245; wall-associated kinase-related protein	pseudogene of wall-associated kinase 2;(source:Araport11)
AT1G21320.2	protein_coding	nucleotide binding;nucleic acid binding		nucleic acid/nucleotide binding protein;(source:Araport11)
AT1G21722.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G22520.2	protein_coding	Domain of unknown function (DUF543)		MICOS complex subunit Mic10-like protein (DUF543);(source:Araport11)
AT1G23037.1	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G23965.1	protein_coding			transcription factor;(source:Araport11)
AT1G24159.1	protein_coding	Interleukin-1 receptor-associated kinase 4 protein		Interleukin-1 receptor-associated kinase 4 protein;(source:Araport11)
AT1G24485.3	protein_coding			ER protein carbohydrate-binding protein;(source:Araport11)
AT1G24490.2	protein_coding	OxaA/YidC-like membrane insertion protein	Homologue of the Alb3/Oxa1/YidC family. ALB4 is almost identical to the Alb3/Oxa1/YidC domain of the previously described 110 kDa inner envelope protein ARTEMIS. However, ALB4 is expressed as a separate 55 kDa protein and is located in the thylakoid membrane of chloroplasts. Analysis of a T-DNA insertion line with a reduced level of Alb4 revealed chloroplasts with an altered ultrastructure. Mutant plastids are larger, more spherical in appearance and the grana stacks within the mutant lines are less appressed than in the wild-type chloroplasts. ALB4 is required for proper chloroplast biogenesis. The mRNA is cell-to-cell mobile.	OxaA/YidC-like membrane insertion protein;(source:Araport11)
AT1G24686.1	pseudogene		Pseudogene of AT1G09245	pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G24793.2	protein_coding	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein		UDP-3-O-acyl N-acetylglycosamine deacetylase family protein;(source:Araport11)
AT1G25422.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G26110.2	protein_coding	decapping 5	Encodes Decapping 5, required for mRNA decapping, P-body formation and translational repression during postembryonic development.	decapping 5;(source:Araport11)
AT1G26780.2	protein_coding	myb domain protein 117	Encodes LOF1 (LATERAL ORGAN FUSION1), a MYB-domain transcription factor expressed in organ boundaries.  Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF2 (At1g69560).	myb domain protein 117;(source:Araport11)
AT1G26815.1	protein_coding	FBD domain family		FBD domain family;(source:Araport11)
AT1G26911.1	pseudogene		Pseudogene of AT1G66590; cox19 family protein	pseudogene of cytochrome c oxidase 19-2;(source:Araport11)
AT1G26976.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G27170.2	protein_coding	transmembrane receptors;ATP binding		transmembrane receptors / ATP binding protein;(source:Araport11)
AT1G27385.3	protein_coding			phosphoribosylformylglycinamidine synthase;(source:Araport11)
AT1G27385.4	protein_coding			phosphoribosylformylglycinamidine synthase;(source:Araport11)
AT1G27570.2	protein_coding	phosphatidylinositol 3- and 4-kinase family protein		phosphatidylinositol 3- and 4-kinase family protein;(source:Araport11)
AT1G28002.1	pseudogene		Pseudogene of AT5G27260; Homeodomain-like protein	pseudogene of Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT1G28330.4	protein_coding	dormancy-associated protein-like 1	dormancy-associated protein (DRM1)	dormancy-associated protein-like 1;(source:Araport11)
AT1G28447.1	pseudogene		Pseudogene of AT5G18880; glucose transmembrane transporter	pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G28591.1	pseudogene		Pseudogene of AT1G28610; GDSL-motif lipase, putative	pseudogene of GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G29040.4	protein_coding			50S ribosomal protein L34;(source:Araport11)
AT1G29041.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G29830.3	protein_coding	Magnesium transporter CorA-like family protein		Magnesium transporter CorA-like family protein;(source:Araport11)
AT1G29850.3	protein_coding	double-stranded DNA-binding family protein	Encodes a protein that by its interaction with HAM acetyltransferases plays an important role during DNA damage responses induced by UV-B radiation and participates in programmed cell death programs.	double-stranded DNA-binding family protein;(source:Araport11)
AT1G29970.3	protein_coding	60S ribosomal protein L18A-1		60S ribosomal protein L18A-1;(source:Araport11)
AT1G30550.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferase superfamily protein;(source:Araport11)
AT1G30784.1	pseudogene		Pseudogene of AT5G01080; beta-galactosidase	pseudogene of Beta-galactosidase related protein;(source:Araport11)
AT1G31274.1	pseudogene		Pseudogene of AT5G26622; beta-galactosidase	pseudogene of Beta-galactosidase related protein;(source:Araport11)
AT1G32225.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G32230.3	protein_coding	WWE protein-protein interaction domain protein family	Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family.  Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants.  Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm. The mRNA is cell-to-cell mobile.	WWE protein-protein interaction domain protein family;(source:Araport11)
AT1G32550.2	protein_coding	2Fe-2S ferredoxin-like superfamily protein	Encodes FdC2, a ferredoxin protein capable of alternative electron partitioning.  FdC1 level increases in conditions of acceptor limitation at PSI.	2Fe-2S ferredoxin-like superfamily protein;(source:Araport11)
AT1G33743.1	pseudogene		Pseudogene of AT1G32660; F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G33790.2	protein_coding	jacalin lectin family protein		jacalin lectin family protein;(source:Araport11)
AT1G33940.2	protein_coding			Serine/Threonine-kinase ULK4-like protein;(source:Araport11)
AT1G34046.1	protein_coding	Ankyrin-repeat containing protein		Ankyrin-repeat containing protein;(source:Araport11)
AT1G34170.3	protein_coding	AUXIN RESPONSE FACTOR 13		AUXIN RESPONSE FACTOR 13;(source:Araport11)
AT1G34281.1	pseudogene		Pseudogene of AT5G28720; unknown protein	pseudogene of hypothetical protein;(source:Araport11)
AT1G34392.1	other_rna			other_RNA;(source:Araport11)
AT1G34797.1	pseudogene		Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor	pseudogene of hypothetical protein;(source:Araport11)
AT1G34803.1	pseudogene		Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor	pseudogene of hypothetical protein;(source:Araport11)
AT1G34808.1	pseudogene		Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor	pseudogene of hypothetical protein;(source:Araport11)
AT1G34813.1	pseudogene		Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor	pseudogene of hypothetical protein;(source:Araport11)
AT1G34818.1	pseudogene		Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor	pseudogene of hypothetical protein;(source:Araport11)
AT1G34823.1	pseudogene		Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor	pseudogene of hypothetical protein;(source:Araport11)
AT1G34828.1	pseudogene		Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor	pseudogene of hypothetical protein;(source:Araport11)
AT1G34836.1	pseudogene		Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor	pseudogene of hypothetical protein;(source:Araport11)
AT1G36050.2	protein_coding	Endoplasmic reticulum vesicle transporter protein		Endoplasmic reticulum vesicle transporter protein;(source:Araport11)
AT1G36441.1	pseudogene		Pseudogene of AT1G66235	pseudogene of unknown protein;(source:Araport11)
AT1G40069.1	pseudogene		Pseudogene of AT5G30520; unknown protein	pseudogene of hypothetical protein;(source:Araport11)
AT1G40104.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G42480.3	protein_coding			TLR4 regulator/MIR-interacting MSAP protein;(source:Araport11)
AT1G42525.2	protein_coding			cysteine proteinase superfamily protein;(source:Araport11)
AT1G43781.1	pseudogene		Pseudogene of AT1G53790; F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G43997.1	pseudogene		Pseudogene of AT1G40087	pseudogene of Plant transposase (Ptta/En/Spm family);(source:Araport11)
AT1G44940.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G45063.2	protein_coding	copper ion binding;electron carriers		copper ion binding / electron carrier protein;(source:Araport11)
AT1G45248.3	protein_coding	Nucleolar histone methyltransferase-related protein		Nucleolar histone methyltransferase-related protein;(source:Araport11)
AT1G45248.4	protein_coding	Nucleolar histone methyltransferase-related protein		Nucleolar histone methyltransferase-related protein;(source:Araport11)
AT1G45248.5	protein_coding	Nucleolar histone methyltransferase-related protein		Nucleolar histone methyltransferase-related protein;(source:Araport11)
AT1G47389.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G48490.3	protein_coding	Protein kinase superfamily protein	Protein kinase which together with IREH1 plays an important role in controlling root skewing and maintaining the microtubule network.	Protein kinase superfamily protein;(source:Araport11)
AT1G48635.2	protein_coding	peroxin 3		peroxin 3;(source:Araport11)
AT1G48650.2	protein_coding	DEA(D/H)-box RNA helicase family protein		DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT1G48698.1	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT1G48700	Natural antisense transcript overlaps with AT1G48700;(source:Araport11)
AT1G49590.2	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Encodes a novel nucleic acid-binding protein that is required for both RdDM (RNA-directed DNA methylation) and pre-mRNA splicing.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G49700.2	protein_coding	Plant protein 1589 of unknown function		Plant protein 1589 of unknown function;(source:Araport11)
AT1G49790.2	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G49938.1	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT1G49940.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G51270.3	protein_coding	structural molecules;transmembrane receptors;structural molecules		vesicle-associated protein 1-4;(source:Araport11)
AT1G52211.1	pseudogene		Pseudogene of AT2G02180; TOM3 (tobamovirus multiplication protein 3)	pseudogene of tobamovirus multiplication protein 3;(source:Araport11)
AT1G52696.1	pseudogene		Pseudogene of AT1G52695; phospholipase/carboxylesterase family protein	pseudogene of alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52942.1	pseudogene		Pseudogene of AT2G18120; SRS4 (SHI-RELATED SEQUENCE 4)	pseudogene of SHI-related sequence 4;(source:Araport11)
AT1G53633.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G54180.2	protein_coding	BREVIS RADIX-like 3	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	BREVIS RADIX-like 3;(source:Araport11)
AT1G54217.2	protein_coding	Ribosomal protein L18ae family		Ribosomal protein L18ae family;(source:Araport11)
AT1G54217.3	protein_coding	Ribosomal protein L18ae family		Ribosomal protein L18ae family;(source:Araport11)
AT1G54390.6	protein_coding	PHD finger protein-related	ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	PHD finger protein-like protein;(source:Araport11)
AT1G55160.3	protein_coding			WAS/WASL-interacting family protein;(source:Araport11)
AT1G55175.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G55221.1	pseudogene		Pseudogene of AT1G55240	pseudogene of hypothetical protein;(source:Araport11)
AT1G55250.2	protein_coding	histone mono-ubiquitination 2	Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.	histone mono-ubiquitination 2;(source:Araport11)
AT1G55340.2	protein_coding	Protein of unknown function (DUF1639)		hypothetical protein (DUF1639);(source:Araport11)
AT1G55604.1	pseudogene		Pseudogene of AT1G26762	pseudogene of transmembrane protein;(source:Araport11)
AT1G56100.2	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G56100.3	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G56380.2	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G57613.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G57835.1	other_rna			other_RNA;(source:Araport11)
AT1G57850.2	protein_coding	Toll-Interleukin-Resistance (TIR) domain family protein		Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT1G58280.3	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT1G58520.2	protein_coding	lipases;hydrolases, acting on ester bonds		GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT1G58520.3	protein_coding	lipases;hydrolases, acting on ester bonds		GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT1G58808.1	other_rna			other_RNA;(source:Araport11)
AT1G61360.2	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61390.2	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G62095.1	pseudogene		Pseudogene of AT1G11820; hydrolase, hydrolyzing O-glycosyl compounds	pseudogene of O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT1G63630.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G63770.4	protein_coding	Peptidase M1 family protein		Peptidase M1 family protein;(source:Araport11)
AT1G63860.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G64230.3	protein_coding	ubiquitin-conjugating enzyme 28		ubiquitin-conjugating enzyme 28;(source:Araport11)
AT1G64230.4	protein_coding	ubiquitin-conjugating enzyme 28		ubiquitin-conjugating enzyme 28;(source:Araport11)
AT1G64572.1	other_rna			other_RNA;(source:Araport11)
AT1G65090.2	protein_coding			nucleolin;(source:Araport11)
AT1G65346.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G65483.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G65486.2	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT1G65820.2	protein_coding	microsomal glutathione s-transferase, putative		microsomal glutathione s-transferase;(source:Araport11)
AT1G65820.3	protein_coding	microsomal glutathione s-transferase, putative		microsomal glutathione s-transferase;(source:Araport11)
AT1G66240.2	protein_coding	homolog of anti-oxidant 1		homolog of anti-oxidant 1;(source:Araport11)
AT1G67260.2	protein_coding	TCP family transcription factor 	Encodes protein with TCP (TB1,CYC,PCF) domain which is likely to be involved in DNA binding and protein-protein interactions. Based on genome analysis, there is a 9-member gene family that possesses this domain in Arabidopsis. Orthologue of Antirrhinum gene CYCLOIDEA.	TCP family transcription factor;(source:Araport11)
AT1G67530.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G67580.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G68310.2	protein_coding	Protein of unknown function (DUF59)	Encodes a protein that has been shown to specifically interact with a sequence motif, PIEPPPHH, in the cytoplasmic tail of a membrane protein that directs the protein from the ER to vacuoles where it is internalized.  Required for both leaf adaxial–abaxial polarity formation  and normal cell proliferation. It is part of a protein complex with CIA1, NAR1, and MET18, which are highly conserved in eukaryotes and are involved in the biogenesis of cytosolic and nuclear Fe-S proteins.	MIP18 family protein (DUF59);(source:Araport11)
AT1G68526.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G68825.2	protein_coding	ROTUNDIFOLIA like 15		ROTUNDIFOLIA like 15;(source:Araport11)
AT1G68872.1	other_rna		Unknown gene	None;(source:Araport11)
AT1G68940.2	protein_coding	Armadillo/beta-catenin-like repeat family protein		Armadillo/beta-catenin-like repeat family protein;(source:Araport11)
AT1G68940.3	protein_coding	Armadillo/beta-catenin-like repeat family protein		Armadillo/beta-catenin-like repeat family protein;(source:Araport11)
AT1G69526.3	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G69543.1	pseudogene		Pseudogene of AT1G74220	pseudogene of homeobox-like protein;(source:Araport11)
AT1G69981.1	pseudogene		Pseudogene of AT1G70020	pseudogene of transmembrane protein;(source:Araport11)
AT1G70400.3	protein_coding			NOSIC domain protein;(source:Araport11)
AT1G70518.1	other_rna			other_RNA;(source:Araport11)
AT1G70730.2	protein_coding	Phosphoglucomutase/phosphomannomutase family protein	Encodes a cytosolic phosphoglucomutase (PGM).  Two Arabidopsis PGM proteins (AT1G70730/PGM2 and AT1G23190/PGM3) have high sequence similarities and redundant functions. Mature plants possessing a single cPGM allele had a major reduction in cPGM activity. Whereas pgm2 and pgm3 single mutants are undistinguishable from the wild type, loss of both PGM2 and PGM3 severely impairs male and female gametophyte development.	Phosphoglucomutase/phosphomannomutase family protein;(source:Araport11)
AT1G70730.3	protein_coding	Phosphoglucomutase/phosphomannomutase family protein	Encodes a cytosolic phosphoglucomutase (PGM).  Two Arabidopsis PGM proteins (AT1G70730/PGM2 and AT1G23190/PGM3) have high sequence similarities and redundant functions. Mature plants possessing a single cPGM allele had a major reduction in cPGM activity. Whereas pgm2 and pgm3 single mutants are undistinguishable from the wild type, loss of both PGM2 and PGM3 severely impairs male and female gametophyte development.	Phosphoglucomutase/phosphomannomutase family protein;(source:Araport11)
AT1G71828.1	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT1G71830	Natural antisense transcript overlaps with AT1G71830;(source:Araport11)
AT1G71920.3	protein_coding	HISTIDINE BIOSYNTHESIS 6B	Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.	HISTIDINE BIOSYNTHESIS 6B;(source:Araport11)
AT1G72530.2	protein_coding	plastid developmental protein DAG, putative	Member of MORF family consisting of of nine full-length proteins encoded in the nuclear genome. MORF proteins are required for all RNA editing events in plastids and for many, possibly also all, sites in mitochondria. Potential link between the RNA binding PPR protein and the protein contributing the enzymatic activity in RNA editing.	plastid developmental protein DAG;(source:Araport11)
AT1G72970.2	protein_coding	Glucose-methanol-choline (GMC) oxidoreductase family protein	Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.	Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT1G74330.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G74457.1	pseudogene		Pseudogene of AT1G18750; AGL65; DNA binding / transcription factor	pseudogene of AGAMOUS-like 65;(source:Araport11)
AT1G74545.1	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT1G74540	Natural antisense transcript overlaps with AT1G74540;(source:Araport11)
AT1G74875.1	protein_coding			F-box protein;(source:Araport11)
AT1G75261.1	pseudogene		Pseudogene of AT4G39230; isoflavone reductase, putative	pseudogene of NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G75370.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G75394.1	pseudogene		Pseudogene of AT2G31305	pseudogene of inhibitor-3;(source:Araport11)
AT1G76911.1	pseudogene		Pseudogene of AT3G62200	pseudogene of Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT1G76980.2	protein_coding			patatin-like phospholipase domain protein;(source:Araport11)
AT1G77880.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G78240.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Encodes TSD2 (TUMOROUS SHOOT DEVELOPMENT2), a putative methyltransferase with an essential role in cell adhesion and coordinated plant development.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G78710.2	protein_coding	TRICHOME BIREFRINGENCE-LIKE 42	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 42;(source:Araport11)
AT2G01372.1	pseudogene		Pseudogene of AT3G13062	pseudogene of Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT2G02023.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G02498.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G02550.2	protein_coding	PIN domain-like family protein		PIN domain-like family protein;(source:Araport11)
AT2G03291.1	pseudogene		Pseudogene of AT2G22340; unknown protein	pseudogene of transmembrane protein;(source:Araport11)
AT2G03565.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G03630.2	protein_coding			suppressor SRP40-like protein;(source:Araport11)
AT2G03680.2	protein_coding	spiral1	The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.	spiral1;(source:Araport11)
AT2G03821.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G04170.5	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT2G04852.1	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT2G04850	Natural antisense transcript overlaps with AT2G04850;(source:Araport11)
AT2G04910.2	protein_coding	Carbohydrate-binding X8 domain superfamily protein		Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT2G05133.1	pseudogene		Pseudogene of AT2G37680	pseudogene of glucose-induced degradation-like protein;(source:Araport11)
AT2G05171.1	pseudogene		Pseudogene of AT3G18310	pseudogene of TATA box-binding protein associated factor RNA polymerase I subunit C;(source:Araport11)
AT2G05370.2	protein_coding			RNA-dependent RNA polymerase-like protein;(source:Araport11)
AT2G05518.1	other_rna			other_RNA;(source:Araport11)
AT2G05630.2	protein_coding	Ubiquitin-like superfamily protein	in the Arabidopsis  autophagy pathway	Ubiquitin-like superfamily protein;(source:Araport11)
AT2G05753.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05801.1	pseudogene		Pseudogene of AT5G30520; unknown protein	pseudogene of hypothetical protein;(source:Araport11)
AT2G06541.2	protein_coding	TTF-type zinc finger protein with HAT dimerisation domain		TTF-type zinc finger protein with HAT dimerization domain-containing protein;(source:Araport11)
AT2G06822.1	pseudogene		Pseudogene of AT2G06822	pseudogene of Ribosomal RNA processing Brix domain protein;(source:Araport11)
AT2G07140.2	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G07663.1	pseudogene		Pseudogene of AT2G07776	pseudogene of unknown protein;(source:Araport11)
AT2G07664.1	pseudogene		Pseudogene of ATMG01040	pseudogene of unknown protein;(source:Araport11)
AT2G07666.1	pseudogene		Pseudogene of AT2G07701	pseudogene of unknown protein;(source:Araport11)
AT2G07667.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07798.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07799.1	pseudogene		Pseudogene of ATMG00260	pseudogene of unknown protein;(source:Araport11)
AT2G07806.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07806.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G07807.1	pseudogene		Pseudogene of ATMG01060	None;(source:Araport11)
AT2G07808.1	pseudogene		Pseudogene of ATMG01330	pseudogene of unknown protein;(source:Araport11)
AT2G07809.1	pseudogene		Pseudogene of ATMG00600	pseudogene of unknown protein;(source:Araport11)
AT2G07812.1	pseudogene		Pseudogene of ATMG01100	pseudogene of unknown protein;(source:Araport11)
AT2G07813.1	pseudogene		Pseudogene of ATMG01260	pseudogene of unknown protein;(source:Araport11)
AT2G07826.1	pseudogene		Pseudogene of ATMG01210	pseudogene of unknown protein;(source:Araport11)
AT2G07827.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07827.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G10260.2	protein_coding			Ulp1 protease family protein;(source:Araport11)
AT2G10440.2	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT2G11983.1	pseudogene		Pseudogene of AT3G17910; SURF1 (SURFEIT 1)	pseudogene of Surfeit locus 1 cytochrome c oxidase biogenesis protein;(source:Araport11)
AT2G13100.2	protein_coding	Major facilitator superfamily protein	Encodes a member of the phosphate starvation-induced glycerol-3-phosphate permease gene family: AT3G47420(G3Pp1), AT4G25220(G3Pp2), AT1G30560(G3Pp3), AT4G17550(G3Pp4) and AT2G13100(G3Pp5). The mRNA is cell-to-cell mobile.	Major facilitator superfamily protein;(source:Araport11)
AT2G13100.3	protein_coding	Major facilitator superfamily protein	Encodes a member of the phosphate starvation-induced glycerol-3-phosphate permease gene family: AT3G47420(G3Pp1), AT4G25220(G3Pp2), AT1G30560(G3Pp3), AT4G17550(G3Pp4) and AT2G13100(G3Pp5). The mRNA is cell-to-cell mobile.	Major facilitator superfamily protein;(source:Araport11)
AT2G13146.1	pseudogene		Pseudogene of AT2G12905	pseudogene of hypothetical protein;(source:Araport11)
AT2G13274.1	pseudogene		Pseudogene of AT2G13150; transcription factor	pseudogene of Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G13706.1	pseudogene		Pseudogene of AT4G15975; zinc finger (C3HC4-type RING finger) family protein	pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT2G14120.3	protein_coding	dynamin related protein	Encodes a dynamin related protein. DRPs are self-assembling GTPasse involved in fission and fusion of membranes. DRP3B functions in mitochondrion and peroxisome fission in combination with DRP3A.	dynamin related protein;(source:Araport11)
AT2G14661.1	pseudogene		Pseudogene of AT2G04040; ATDTX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter	pseudogene of MATE efflux family protein;(source:Araport11)
AT2G14680.2	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT2G15012.1	pseudogene		Pseudogene of AT4G00416; MBD3 (methyl-CpG-binding domain 3); DNA binding	pseudogene of methyl-CPG-binding domain 3;(source:Araport11)
AT2G15013.1	pseudogene		Pseudogene of AT4G00416; MBD3 (methyl-CpG-binding domain 3); DNA binding	pseudogene of methyl-CPG-binding domain 3;(source:Araport11)
AT2G15014.1	pseudogene		Pseudogene of AT4G00416; MBD3 (methyl-CpG-binding domain 3); DNA binding	pseudogene of methyl-CPG-binding domain 3;(source:Araport11)
AT2G15015.1	pseudogene		Pseudogene of AT4G00416; MBD3 (methyl-CpG-binding domain 3); DNA binding	pseudogene of methyl-CPG-binding domain 3;(source:Araport11)
AT2G15016.1	pseudogene		Pseudogene of AT4G00416; MBD3 (methyl-CpG-binding domain 3); DNA binding	pseudogene of methyl-CPG-binding domain 3;(source:Araport11)
AT2G15017.1	pseudogene		Pseudogene of AT4G00416; MBD3 (methyl-CpG-binding domain 3); DNA binding	pseudogene of methyl-CPG-binding domain 3;(source:Araport11)
AT2G15042.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT2G15271.1	pseudogene		Pseudogene of AT5G49200; WD-40 repeat family protein / zfwd4 protein (ZFWD4)	pseudogene of WD-40 repeat family protein / zfwd3 protein (ZFWD3);(source:Araport11)
AT2G15292.1	other_rna			other_RNA;(source:Araport11)
AT2G15570.2	protein_coding	Thioredoxin superfamily protein	chloroplast protein similar to prokaryotic thioredoxin.	Thioredoxin superfamily protein;(source:Araport11)
AT2G15860.2	protein_coding			BAT2 domain protein;(source:Araport11)
AT2G16018.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G17043.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G17064.1	pseudogene		Pseudogene of AT2G17080	pseudogene of hypothetical protein (DUF241);(source:Araport11)
AT2G17477.1	pseudogene		Pseudogene of AT3G22350; F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G18323.1	pseudogene		Pseudogene of ATMG00450	pseudogene of unknown protein;(source:Araport11)
AT2G19850.2	protein_coding			transcription repressor;(source:Araport11)
AT2G20440.2	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G20970.2	protein_coding			lipid-binding protein;(source:Araport11)
AT2G20993.1	pseudogene		Pseudogene of AT2G21045	pseudogene of Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT2G21172.1	pseudogene		Pseudogene of AT5G16486	pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT2G22088.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G22540.2	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway.  SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT2G22990.6	protein_coding	sinapoylglucose 1	sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.	sinapoylglucose 1;(source:Araport11)
AT2G23660.2	protein_coding	LOB domain-containing protein 10		LOB domain-containing protein 10;(source:Araport11)
AT2G23673.1	pseudogene		Pseudogene of AT2G23680; stress-responsive protein, putative	pseudogene of Cold acclimation protein WCOR413 family;(source:Araport11)
AT2G24735.1	other_rna			other_RNA;(source:Araport11)
AT2G24791.1	pseudogene		Pseudogene of AT5G18880; glucose transmembrane transporter	pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT2G25169.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G25290.2	protein_coding	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT2G26215.1	transposable_element_gene			transposable_element_gene;(source:Araport11)
AT2G27720.2	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT2G27720.3	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT2G27936.1	pseudogene		Pseudogene of AT4G10895; Expressed protein	pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT2G28310.3	protein_coding	Protein of unknown function (DUF707)		trimethylguanosine synthase (DUF707);(source:Araport11)
AT2G28560.4	protein_coding	DNA repair (Rad51) family protein	Encodes a protein of the RAD51B family involved in double stranded DNA repair. Homozygous mutant plants show increased sensitivity to mitomycin which induces DS breaks.	DNA repair (Rad51) family protein;(source:Araport11)
AT2G28670.2	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein	Encodes a protein of unknown function that is involved in formation of the casparian strip. ESB1 is localized to the casparian strip and this localization is depended on CASP1 and 2. esb1 mutants have increased levels of suberin, disordered casparian strip and altered levels of several ions in their leaves.	Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT2G29530.3	protein_coding	Tim10/DDP family zinc finger protein	Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. Together with AtTIM9, AtTIM10 is non-redundantly essential for maintaining mitochondrial function of early embryo proper cells and endosperm free-nuclei.	Tim10/DDP family zinc finger protein;(source:Araport11)
AT2G30120.2	protein_coding			protein FLC EXPRESSOR;(source:Araport11)
AT2G30460.2	protein_coding	Nucleotide/sugar transporter family protein	UXT2 is a member of the NST-KT subfamily  of nucleotide/sugar transporters. It is localized to the golgi and functions as a UDP-Xyl transporter.	Nucleotide/sugar transporter family protein;(source:Araport11)
AT2G32170.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G32291.1	pseudogene		Pseudogene of AT2G31470; F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G32320.2	protein_coding	tRNAHis guanylyltransferase	Interacts genetically with its homolog ICA1; alters growth and flowering time plasticity in relation to temperature. Mutants display effects on growth, flowering and plant development, and ploidy level depending on ambient temperature (effects specific at >27C).	tRNAHis guanylyltransferase;(source:Araport11)
AT2G32320.3	protein_coding	tRNAHis guanylyltransferase	Interacts genetically with its homolog ICA1; alters growth and flowering time plasticity in relation to temperature. Mutants display effects on growth, flowering and plant development, and ploidy level depending on ambient temperature (effects specific at >27C).	tRNAHis guanylyltransferase;(source:Araport11)
AT2G33175.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G34100.2	protein_coding			nonsense-mediated mRNA decay-like protein;(source:Araport11)
AT2G34170.2	protein_coding	Protein of unknown function (DUF688)		hypothetical protein (DUF688);(source:Araport11)
AT2G35080.2	protein_coding	nucleotide binding;ATP binding;aminoacyl-tRNA ligases		ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein;(source:Araport11)
AT2G35140.3	protein_coding	DCD (Development and Cell Death) domain protein		DCD (Development and Cell Death) domain protein;(source:Araport11)
AT2G35743.1	pseudogene		Pseudogene of AT2G35750; unknown protein	unknown protein;(source:Araport11)
AT2G35990.3	protein_coding	Putative lysine decarboxylase family protein		Putative lysine decarboxylase family protein;(source:Araport11)
AT2G36355.3	protein_coding	Family of unknown function (DUF662) 		RAB6-interacting golgin (DUF662);(source:Araport11)
AT2G36480.2	protein_coding	ENTH/VHS family protein		pre-mRNA cleavage complex 2 Pcf11-like protein;(source:Araport11)
AT2G36815.1	protein_coding			mid region of cactin;(source:Araport11)
AT2G36815.2	protein_coding			mid region of cactin;(source:Araport11)
AT2G36900.2	protein_coding	membrin 11	member of Membrin Gene Family	membrin 11;(source:Araport11)
AT2G38695.2	protein_coding			Gag-Pol polyprotein/retrotransposon;(source:Araport11)
AT2G38695.3	protein_coding			Gag-Pol polyprotein/retrotransposon;(source:Araport11)
AT2G39310.3	protein_coding	jacalin-related lectin 22		jacalin-related lectin 22;(source:Araport11)
AT2G39460.2	protein_coding	ribosomal protein L23AA	Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.	ribosomal protein L23AA;(source:Araport11)
AT2G40815.1	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT2G41391.1	pseudogene		Pseudogene of AT2G41380; embryo-abundant protein-related	pseudogene of S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G41473.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT2G41705.2	protein_coding	camphor resistance CrcB family protein	Encodes a fluoride export protein.	camphor resistance CrcB family protein;(source:Araport11)
AT2G41945.3	protein_coding		Encodes a novel protein found only in plants. RED1 has two isoforms RED1.1 and RED1.2. It is localized to the nucleus. Loss of function mutants are embryo lethal but can be rescued before desiccation by embryo culture.	transmembrane protein;(source:Araport11)
AT2G42425.1	other_rna			other_RNA;(source:Araport11)
AT2G42510.2	protein_coding			survival motor neuron interacting protein;(source:Araport11)
AT2G42510.3	protein_coding			survival motor neuron interacting protein;(source:Araport11)
AT2G43465.1	protein_coding	RNA-binding ASCH domain protein		RNA-binding ASCH domain protein;(source:Araport11)
AT2G43500.2	protein_coding	Plant regulator RWP-RK family protein		Plant regulator RWP-RK family protein;(source:Araport11)
AT2G43680.3	protein_coding	IQ-domain 14	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 14;(source:Araport11)
AT2G43780.2	protein_coding			cytochrome oxidase assembly protein;(source:Araport11)
AT2G43865.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G43910.3	protein_coding	HARMLESS TO OZONE LAYER 1		HARMLESS TO OZONE LAYER 1;(source:Araport11)
AT2G43920.3	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G43932.1	pseudogene		Pseudogene of AT2G43940; thiol methyltransferase, putative	pseudogene of S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G44280.3	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G44383.1	pseudogene		Pseudogene of AT2G44400; DC1 domain-containing protein	pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G44798.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44800;(source:Araport11)
AT2G44850.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G44995.1	other_rna			other_RNA;(source:Araport11)
AT2G45135.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G45245.4	other_rna			other_RNA;(source:Araport11)
AT2G46700.2	protein_coding	CDPK-related kinase 3		CDPK-related kinase 3;(source:Araport11)
AT3G01130.2	protein_coding			ATP synthase E chain;(source:Araport11)
AT3G02470.4	protein_coding	S-adenosylmethionine decarboxylase	Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.	S-adenosylmethionine decarboxylase;(source:Araport11)
AT3G03726.2	protein_coding	Protein of unknown function (DUF295)		F-box/kelch-repeat protein, putative (DUF295);(source:Araport11)
AT3G03773.2	protein_coding	HSP20-like chaperones superfamily protein	Encodes one of two isoforms of a co-chaperone of HSP90 that is required for root growth, in particular in the maintenance of the root meristem.  It can be phosphorylated in vitro by human and maize CK2.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT3G05165.4	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G05345.1	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G05410.2	protein_coding	Photosystem II reaction center PsbP family protein		Photosystem II reaction center PsbP family protein;(source:Araport11)
AT3G05520.2	protein_coding	Subunits of heterodimeric actin filament capping protein Capz superfamily	Encodes a capping protein that acts as a phosphatidic acid biosensor and key transducer of fluxes in membrane signaling phospholipids into changes in actin cytoskeleton dynamics.	Subunits of heterodimeric actin filament capping protein Capz superfamily;(source:Araport11)
AT3G05932.1	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT3G05930	Natural antisense transcript overlaps with AT3G05930;(source:Araport11)
AT3G06760.2	protein_coding	Drought-responsive family protein		Drought-responsive family protein;(source:Araport11)
AT3G08040.2	protein_coding	MATE efflux family protein	Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.	MATE efflux family protein;(source:Araport11)
AT3G08510.3	protein_coding	phospholipase C 2	Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol.  It is involved in auxin biosynthesis and signaling, modulating development of both male and female gametophytes. It also regulates MAMP-triggered immunity by modulating ROS production.	phospholipase C 2;(source:Araport11)
AT3G09350.3	protein_coding	Fes1A	Encodes one of the Arabidopsis orthologs of the human Hsp70-binding protein 1 (HspBP-1) and yeast Fes1p: Fes1A (AT3G09350), Fes1B (AT3G53800), Fes1C (AT5G02150). Fes1A is cytosolic and associates with cytosolic Hsp70.  Mutants showed increased heat-sensitive phenotype suggestion the involvement of Fes1A in acquired thermotolerance.  Does not have nucleotide exchange factor activity in vitro.	Fes1A;(source:Araport11)
AT3G09405.1	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT3G10480.3	protein_coding	NAC domain containing protein 50	Encodes a NAC transcription factor that physically associates with the histone H3K4 demethylase JMJ14 and through that association is involved in transcriptional repression and flowering time control. It binds the NAC-binding site, the Mitochondrial Dysfunction Motif.	NAC domain containing protein 50;(source:Araport11)
AT3G10915.5	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G11000.2	protein_coding	DCD (Development and Cell Death) domain protein		DCD (Development and Cell Death) domain protein;(source:Araport11)
AT3G11165.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G11220.2	protein_coding	Paxneb protein-related	A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1?ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.	Paxneb protein-like protein;(source:Araport11)
AT3G11400.2	protein_coding	eukaryotic translation initiation factor 3G1	One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3). The mRNA is cell-to-cell mobile.	eukaryotic translation initiation factor 3G1;(source:Araport11)
AT3G11720.3	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT3G11945.2	protein_coding	homogentisate prenyltransferase	Encodes a protein involved in plastoquinone-9 biosynthesis. The enzyme possesses homogentisate prenyltransferase activity and was shown to use solanesyl diphosphate, farnesyl diphosphate and geranylgeranyldiphosphate as prenyl donors, but not phytyldiphosphate.  This gene At3g11945 derives from a split of At3g11950, publications Tian et al (2007) and Sadre et al (2006) refer to this gene as At3g11950.	homogentisate prenyltransferase;(source:Araport11)
AT3G12700.2	protein_coding	Eukaryotic aspartyl protease family protein	Encodes an aspartic protease has an important regulatory function in chloroplasts that not only influences photosynthetic carbon metabolism but   also plastid and nuclear gene expression.	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G13030.3	protein_coding	hAT transposon superfamily protein		hAT transposon superfamily protein;(source:Araport11)
AT3G13225.2	protein_coding	WW domain-containing protein		WW domain-containing protein;(source:Araport11)
AT3G13404.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G13433.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G13677.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G13882.2	protein_coding	Ribosomal protein L34		Ribosomal protein L34;(source:Araport11)
AT3G15351.3	protein_coding			P53/DNA damage-regulated protein;(source:Araport11)
AT3G15536.1	other_rna		Unknown gene The mRNA is cell-to-cell mobile.	other_RNA;(source:Araport11)
AT3G17190.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G17712.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G17760.2	protein_coding	glutamate decarboxylase 5		glutamate decarboxylase 5;(source:Araport11)
AT3G18160.3	protein_coding	peroxin 3-1		peroxin 3-1;(source:Araport11)
AT3G18235.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G18282.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G18957.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G19290.2	protein_coding	ABRE binding factor 4	bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediates ABA-dependent stress responses.ABF4 acts through SnRK2 pathway and binds to ABA response elements of the promoters of NYE1 and regulates their expression to promote chlorophyll degradation.	ABRE binding factor 4;(source:Araport11)
AT3G19830.2	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G19960.2	protein_coding	myosin 1	member of Myosin-like proteins	myosin 1;(source:Araport11)
AT3G20440.2	protein_coding	Alpha amylase family protein	Encodes BE1, a putative glycoside hydrolase. Involved in organogenesis and somatic embryogenesis by regulating carbohydrate metabolism. Mutation in BE1 has pleotrophic effect on the whole plant development.	Alpha amylase family protein;(source:Araport11)
AT3G20898.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G21260.3	protein_coding	Glycolipid transfer protein (GLTP) family protein		Glycolipid transfer protein (GLTP) family protein;(source:Araport11)
AT3G21350.2	protein_coding	RNA polymerase transcriptional regulation mediator-related		RNA polymerase transcriptional regulation mediator-like protein;(source:Araport11)
AT3G21481.1	pseudogene		Pseudogene of AT4G34870; ROC5 (ROTAMASE CYP 5); peptidyl-prolyl cis-trans isomerase	pseudogene of rotamase cyclophilin 5;(source:Araport11)
AT3G21791.1	pseudogene		Pseudogene of AT3G21790; UDP-glucoronosyl/UDP-glucosyl transferase family protein	pseudogene of UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G22235.2	protein_coding			cysteine-rich TM module stress tolerance protein;(source:Araport11)
AT3G23100.2	protein_coding	homolog of human DNA ligase iv-binding protein XRCC4	A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. Yeast two-hybrid analysis demonstrated a strong interaction between A. thaliana DNA ligase IV and the A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. This interaction is shown to be mediated via the tandem BRCA C-terminal domains of A. thaliana DNA ligase IV protein.	DNA ligase IV-binding protein;(source:Araport11)
AT3G23109.1	pseudogene		Pseudogene of AT1G61410; tolA protein-related	pseudogene of DNA ligase IV-binding protein;(source:Araport11)
AT3G23633.2	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G24255.2	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)-related family protein		RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT3G24518.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G24520;(source:Araport11)
AT3G24929.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G25182.1	pseudogene		Pseudogene of AT5G24050; DNA binding protein	pseudogene of plant-specific B3-DNA-binding domain protein (DUF313);(source:Araport11)
AT3G25700.2	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G26020.3	protein_coding	Protein phosphatase 2A regulatory B subunit family protein	Encodes protein phosphatase 2A (PP2A) B'eta subunit.  Targeted to nucleus and cytosol.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT3G26020.4	protein_coding	Protein phosphatase 2A regulatory B subunit family protein	Encodes protein phosphatase 2A (PP2A) B'eta subunit.  Targeted to nucleus and cytosol.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT3G26872.1	pseudogene		Pseudogene of AT3G26880; self-incompatibility protein-related	pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G26922.1	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G27321.1	pseudogene		Pseudogene of AT1G08985; DNA-binding protein	pseudogene of AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G27460.2	protein_coding	SGF29 tudor-like domain		SGF29 tudor-like domain-containing protein;(source:Araport11)
AT3G28611.1	pseudogene		Pseudogene of AT5G43210; endo/excinuclease amino terminal domain-containing protein	pseudogene of Excinuclease ABC;(source:Araport11)
AT3G28690.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT3G28890.2	protein_coding	receptor like protein 43		receptor like protein 43;(source:Araport11)
AT3G28923.1	pseudogene		Pseudogene of AT5G01080; beta-galactosidase	pseudogene of Beta-galactosidase related protein;(source:Araport11)
AT3G29037.1	pseudogene		Pseudogene of AT5G35760; beta-galactosidase	pseudogene of Beta-galactosidase related protein;(source:Araport11)
AT3G29077.1	pseudogene		Pseudogene of AT3G26880; self-incompatibility protein-related	pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G29789.1	pseudogene		Pseudogene of AT3G29785	pseudogene of Pol-like polyprotein/retrotransposon;(source:Araport11)
AT3G30235.1	protein_coding	General transcription factor 2-related zinc finger protein		General transcription factor 2-related zinc finger protein;(source:Araport11)
AT3G30281.1	pseudogene		Pseudogene of AT1G19260; hAT dimerisation domain-containing protein	pseudogene of TTF-type zinc finger protein with HAT dimerization domain-containing protein;(source:Araport11)
AT3G30380.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G30714.1	pseudogene		Pseudogene of AT3G26870; self-incompatibility protein-related	pseudogene of Plant self-incompatibility protein S1 family;(source:Araport11)
AT3G31005.1	pseudogene		Pseudogene of AT1G66520; PDE194 (PIGMENT DEFECTIVE 194); formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase	pseudogene of formyltransferase;(source:Araport11)
AT3G31402.1	protein_coding	General transcription factor 2-related zinc finger protein		General transcription factor 2-related zinc finger protein;(source:Araport11)
AT3G31402.2	protein_coding	General transcription factor 2-related zinc finger protein		General transcription factor 2-related zinc finger protein;(source:Araport11)
AT3G33530.2	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G42466.1	pseudogene		Pseudogene of AT2G26730; leucine-rich repeat transmembrane protein kinase, putative	pseudogene of Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G43220.2	protein_coding	Phosphoinositide phosphatase family protein		Phosphoinositide phosphatase family protein;(source:Araport11)
AT3G43251.1	pseudogene		Pseudogene of AT5G26880; tRNA/rRNA methyltransferase (SpoU) family protein	pseudogene of tRNA (cytidine(34)-2-O)-methyltransferase;(source:Araport11)
AT3G43920.2	protein_coding	dicer-like 3	Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.	dicer-like 3;(source:Araport11)
AT3G43920.3	protein_coding	dicer-like 3	Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.	dicer-like 3;(source:Araport11)
AT3G44516.1	pseudogene		Pseudogene of AT1G31990; unknown protein	pseudogene of transmembrane protein;(source:Araport11)
AT3G44717.1	pseudogene		Pseudogene of AT5G03495; nucleotide binding protein	pseudogene of RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G44770.2	protein_coding	Protein of unknown function (DUF626)		transmembrane protein, putative (DUF626);(source:Araport11)
AT3G45000.2	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT3G46614.1	other_rna		Unknown gene	None;(source:Araport11)
AT3G46616.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G47021.1	pseudogene		Pseudogene of AT4G39930; unknown protein	pseudogene of hypothetical protein;(source:Araport11)
AT3G47350.2	protein_coding	hydroxysteroid dehydrogenase 2	Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include:   At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463).  Two copies of HSD1 and HSD4 exist due to a gene duplication event.  In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.	hydroxysteroid dehydrogenase 2;(source:Araport11)
AT3G49725.1	protein_coding	GTP-binding protein, HflX		GTP-binding protein, HflX;(source:Araport11)
AT3G50301.1	pseudogene		Pseudogene of AT1G49230; zinc finger (C3HC4-type RING finger) family protein	pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT3G50808.1	protein_coding	PLATZ transcription factor family protein		PLATZ transcription factor family protein;(source:Araport11)
AT3G51640.2	protein_coding			stress response NST1-like protein;(source:Araport11)
AT3G52050.5	protein_coding	5'-3' exonuclease family protein		5-3 exonuclease family protein;(source:Araport11)
AT3G52880.2	protein_coding	monodehydroascorbate reductase 1	Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2	monodehydroascorbate reductase 1;(source:Araport11)
AT3G52957.1	pseudogene		Pseudogene of AT2G33200; F-box family protein	pseudogene of F-box family protein;(source:Araport11)
AT3G53365.1	other_rna			other_RNA;(source:Araport11)
AT3G53403.1	pseudogene		Pseudogene of AT3G53410; zinc finger (C3HC4-type RING finger) family protein	pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT3G54085.2	protein_coding	Yos1-like protein		Yos1-like protein;(source:Araport11)
AT3G54366.1	other_rna		Unknown gene The mRNA is cell-to-cell mobile.	other_RNA;(source:Araport11)
AT3G54730.2	protein_coding			transcription repressor;(source:Araport11)
AT3G54730.3	protein_coding			transcription repressor;(source:Araport11)
AT3G54730.4	protein_coding			transcription repressor;(source:Araport11)
AT3G54860.2	protein_coding	Sec1/munc18-like (SM) proteins superfamily	Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.	Sec1/munc18-like (SM) proteins superfamily;(source:Araport11)
AT3G55770.6	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT3G56770.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G58347.1	pseudogene		Pseudogene of AT3G58330	pseudogene of phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT3G58520.2	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT3G60164.1	pseudogene		Pseudogene of AT3G60966; protein binding / zinc ion binding	pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT3G60238.1	other_rna			other_RNA;(source:Araport11)
AT3G60613.1	pseudogene		Pseudogene of AT3G61250; AtMYB17 (myb domain protein 17); DNA binding / transcription factor	pseudogene of myb domain protein 17;(source:Araport11)
AT3G61500.2	protein_coding			BPS1-like protein;(source:Araport11)
AT3G62030.2	protein_coding	rotamase CYP 4	nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	rotamase CYP 4;(source:Araport11)
AT3G62190.2	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G62800.3	protein_coding	double-stranded-RNA-binding protein 4	Encodes a nuclear dsRNA-binding protein DRB4 that interacts specifically with DCL4.  May regulate DCL4 function and thereby affect miRNA biogenesis. Also has an impact on polymerase IV-dependent siRNA levels. DRB4 interacts with the P6 viral protein from Cauliflower mosaic virus and may be a target of viral silencing suppression.	double-stranded-RNA-binding protein 4;(source:Araport11)
AT3G63540.1	protein_coding	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	Conceptual translation of this open reading frame gave the sequence of a 229-residue hypothetical protein that contains the same sequence as the mature A. thaliana chloroplast luminal 19-kDa protein linked to a putative signal sequence.	thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein);(source:Araport11)
AT4G00020.2	protein_coding	BREAST CANCER 2 like 2A	Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development and defense gene transcription during plant immune responses.	BREAST CANCER 2 like 2A;(source:Araport11)
AT4G00480.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G00651.1	protein_coding			Fe superoxide dismutase;(source:Araport11)
AT4G00753.1	pseudogene		Pseudogene of AT5G37890; seven in absentia (SINA) protein, putative	pseudogene of Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT4G00872.1	protein_coding	Plant invertase/pectin methylesterase inhibitor superfamily protein		Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT4G01335.1	protein_coding			TATA box-binding protein associated factor RNA polymerase I subunit B-like protein;(source:Araport11)
AT4G02200.3	protein_coding	Drought-responsive family protein		Drought-responsive family protein;(source:Araport11)
AT4G02450.2	protein_coding	HSP20-like chaperones superfamily protein	Encodes one of two isoforms of a co-chaperone of HSP90 that is required for root growth, in particular in the maintenance of the root meristem.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT4G03063.1	pseudogene		Pseudogene of AT4G03070; AOP1 (2-oxoglutarate-dependent dioxygenase 1.1); 	pseudogene of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G03364.1	pseudogene		Pseudogene of AT4G05230; ubiquitin family protein	pseudogene of Ubiquitin-like superfamily protein;(source:Araport11)
AT4G03376.1	pseudogene		Pseudogene of AT1G56420	pseudogene of antigenic heat-stable protein;(source:Araport11)
AT4G03437.1	pseudogene		Pseudogene of AT4G03480; ankyrin repeat family protein	pseudogene of ankyrin repeat family protein;(source:Araport11)
AT4G03443.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G03520.2	protein_coding	Thioredoxin superfamily protein	Encodes a redox activated co-chaperone, chloroplast localized thioredoxin, similar to prokaryotic types.	Thioredoxin superfamily protein;(source:Araport11)
AT4G03728.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G03914.1	pseudogene		Pseudogene of AT5G30520; unknown protein	pseudogene of hypothetical protein;(source:Araport11)
AT4G04409.1	pseudogene		Pseudogene of AT3G54560; HTA11; DNA binding protein	pseudogene of histone H2A 11;(source:Araport11)
AT4G04653.1	pseudogene		Pseudogene of AT1G35516	pseudogene of myb-like transcription factor family protein;(source:Araport11)
AT4G05087.1	pseudogene		Pseudogene of AT5G16486	pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT4G05575.1	pseudogene		Pseudogene of AT5G30520; unknown protein	pseudogene of hypothetical protein;(source:Araport11)
AT4G05612.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G05612.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G06583.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G06639.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G06641.1	pseudogene		Pseudogene of AT5G01080; beta-galactosidase	pseudogene of Beta-galactosidase related protein;(source:Araport11)
AT4G06676.2	protein_coding			etoposide-induced protein;(source:Araport11)
AT4G07841.1	pseudogene		Pseudogene of AT1G24440; protein binding / zinc ion binding protein	pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT4G07869.1	pseudogene		Pseudogene of AT1G24440; protein binding / zinc ion binding protein	pseudogene of RING/U-box superfamily protein;(source:Araport11)
AT4G08263.1	protein_coding			DNA-binding storekeeper protein transcriptional regulator-like protein;(source:Araport11)
AT4G08263.2	protein_coding			DNA-binding storekeeper protein transcriptional regulator-like protein;(source:Araport11)
AT4G08599.1	pseudogene		Pseudogene of AT5G28720; unknown protein	pseudogene of hypothetical protein;(source:Araport11)
AT4G08980.5	protein_coding	F-BOX WITH WD-40 2	Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response. It is a F-box subunit of the SCF E3 ubiquitin ligase complex that mediates the degradation of 14-3-3 proteins.	F-BOX WITH WD-40 2;(source:Araport11)
AT4G08991.1	pseudogene		Pseudogene of AT4G14145	pseudogene of cytochrome C oxidase assembly protein;(source:Araport11)
AT4G09000.2	protein_coding	general regulatory factor 1	Encodes a 14-3-3 gene, designated GRF1 chi (for general regulatory factor1-G-box factor 14-3-3 homolog isoform chi). The major native forms of 14-3-3s are homo- and hetero-dimers, the biological functions of which are to interact physically with specific client proteins and thereby effect a change in the client. As a result, 14-3-3s are involved in a vast array of processes such as the response to stress, cell-cycle control, and apoptosis, serving as adapters, activators, and repressors. There are currently 133 full-length sequences available.	general regulatory factor 1;(source:Araport11)
AT4G09452.1	pseudogene		Pseudogene of AT2G38590; F-box family protein	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G09468.1	pseudogene		Pseudogene of AT1G16740; ribosomal protein L20 family protein	pseudogene of Ribosomal protein L20;(source:Araport11)
AT4G09720.3	protein_coding	RAB GTPase homolog G3A		RAB GTPase homolog G3A;(source:Araport11)
AT4G10201.1	pseudogene		Pseudogene of AT3G21130; F-box family protein-related	pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G10414.1	pseudogene		Pseudogene of AT4G10430	pseudogene of TMPIT-like protein;(source:Araport11)
AT4G10970.5	protein_coding		UAP56-interacting factor1, binds single stranded RNA and, along with UIEF2,,appears to play a role in nuclear export of RNA.	ribosome maturation factor;(source:Araport11)
AT4G10970.6	protein_coding		UAP56-interacting factor1, binds single stranded RNA and, along with UIEF2,,appears to play a role in nuclear export of RNA.	ribosome maturation factor;(source:Araport11)
AT4G11521.1	protein_coding	Receptor-like protein kinase-related family protein		Receptor-like protein kinase-related family protein;(source:Araport11)
AT4G12020.3	protein_coding	protein kinase family protein	Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301.	protein kinase family protein;(source:Araport11)
AT4G12580.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G12610.2	protein_coding	transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors		transcription initiation factor IIF subunit alpha RAP74;(source:Araport11)
AT4G12790.5	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G12840.2	protein_coding	Protein of unknown function (DUF707)		GTPase Der (DUF707);(source:Araport11)
AT4G12960.2	protein_coding	Gamma interferon responsive lysosomal thiol (GILT) reductase family protein		Gamma interferon responsive lysosomal thiol (GILT) reductase family protein;(source:Araport11)
AT4G13040.3	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a member of the AP2/EREBP transcription factor family that has only one AP2 domain. It is a positive regulator of disease defense that functions upstream of SA accumulation.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G13285.1	pseudogene		Pseudogene of ATCG00420	pseudogene of NADH dehydrogenase subunit J;(source:Araport11)
AT4G13572.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G13611.1	pseudogene		Pseudogene of AT3G56530; ANAC064 (Arabidopsis NAC domain containing protein 64); transcription factor	pseudogene of NAC domain containing protein 64;(source:Araport11)
AT4G13996.1	pseudogene		Pseudogene of AT2G35345; unknown protein	pseudogene of hypothetical protein;(source:Araport11)
AT4G14135.1	pseudogene		Pseudogene of AT3G29785	pseudogene of Pol-like polyprotein/retrotransposon;(source:Araport11)
AT4G14149.1	pseudogene		Pseudogene of AT2G24480; zinc finger (C3HC4-type RING finger) family protein	pseudogene of Zinc finger;(source:Araport11)
AT4G14368.1	protein_coding	Regulator of chromosome condensation (RCC1) family protein		Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT4G14500.2	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT4G14661.1	pseudogene		Pseudogene of AT1G47497; nucleic acid binding protein	pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT4G15020.2	protein_coding	hAT transposon superfamily		hAT transposon superfamily;(source:Araport11)
AT4G15030.2	protein_coding			folate-sensitive fragile site protein;(source:Araport11)
AT4G15160.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	According to PMID:14623884,  PAC2 has not been correctly annotated; At4g15160 (protease inhibitor/seed storage/lipid transfer protein (LTP) family protein) containsAtPAC2(nucleotides 3269-3831).	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G15430.2	protein_coding	ERD (early-responsive to dehydration stress) family protein		ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G15955.3	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G16143.2	protein_coding	importin alpha isoform 2	Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	importin alpha isoform 2;(source:Araport11)
AT4G16162.2	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G16162.3	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G16180.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G16695.3	protein_coding			transmembrane protein;(source:Araport11)
AT4G16915.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G17140.2	protein_coding	pleckstrin homology (PH) domain-containing protein		pleckstrin homology (PH) domain-containing protein;(source:Araport11)
AT4G17420.2	protein_coding	Tryptophan RNA-binding attenuator protein-like	PAWH1 along with PAWH2 is part of endoplasmic reticulum ubiquitin ligase complex with Arabidopsis HRD1 via interaction with EBS7. As such it plays a role in promoting protein degradation via the ERAD pathway.	Tryptophan RNA-binding attenuator protein-like protein;(source:Araport11)
AT4G17420.3	protein_coding	Tryptophan RNA-binding attenuator protein-like	PAWH1 along with PAWH2 is part of endoplasmic reticulum ubiquitin ligase complex with Arabidopsis HRD1 via interaction with EBS7. As such it plays a role in promoting protein degradation via the ERAD pathway.	Tryptophan RNA-binding attenuator protein-like protein;(source:Araport11)
AT4G17486.2	protein_coding	PPPDE putative thiol peptidase family protein		PPPDE putative thiol peptidase family protein;(source:Araport11)
AT4G17512.1	pseudogene		Pseudogene of AT4G17510; UCH3; ubiquitin thiolesterase	pseudogene of ubiquitin C-terminal hydrolase 3;(source:Araport11)
AT4G17590.2	protein_coding			NOL1/NOP2/sun family protein;(source:Araport11)
AT4G18020.5	protein_coding	CheY-like two-component responsive regulator family protein	Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).	CheY-like two-component responsive regulator family protein;(source:Araport11)
AT4G18320.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G18422.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G19045.1	protein_coding	Mob1/phocein family protein		Mob1/phocein family protein;(source:Araport11)
AT4G19239.1	pseudogene		Pseudogene of AT5G01080; beta-galactosidase	pseudogene of Beta-galactosidase related protein;(source:Araport11)
AT4G19850.2	protein_coding	lectin-related	encodes a protein similar to phloem protein 2 in cucumber. a member of a large gene family.	lectin-like protein;(source:Araport11)
AT4G20310.2	protein_coding	Peptidase M50 family protein	Encodes a Golgi-localized protease that can cleave the  transcription factors bZIP17 and bZIP28 that are translocated from the ER through the Golgi so that the transcription factors can be released to translocate into the nucleus.	Peptidase M50 family protein;(source:Araport11)
AT4G20310.3	protein_coding	Peptidase M50 family protein	Encodes a Golgi-localized protease that can cleave the  transcription factors bZIP17 and bZIP28 that are translocated from the ER through the Golgi so that the transcription factors can be released to translocate into the nucleus.	Peptidase M50 family protein;(source:Araport11)
AT4G20380.8	protein_coding	LSD1 zinc finger family protein	LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge	LSD1 zinc finger family protein;(source:Araport11)
AT4G20440.4	protein_coding	small nuclear ribonucleoprotein associated protein B		small nuclear ribonucleoprotein associated protein B;(source:Araport11)
AT4G21060.2	protein_coding	Galactosyltransferase family protein	Encodes an endomembrane system-localized, hydroxyproline-O-galactosyltransferase specific for arabinogalactan-protein biosynthesis.	Galactosyltransferase family protein;(source:Araport11)
AT4G21200.2	protein_coding	gibberellin 2-oxidase 8	Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins.	gibberellin 2-oxidase 8;(source:Araport11)
AT4G21200.3	protein_coding	gibberellin 2-oxidase 8	Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins.	gibberellin 2-oxidase 8;(source:Araport11)
AT4G22066.1	pseudogene		Pseudogene of AT5G66830; F-box family protein	pseudogene of F-box protein (DUF295);(source:Araport11)
AT4G22850.2	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT4G22870.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G23364.1	pseudogene		Pseudogene of AT4G23340; oxidoreductase, 2OG-Fe(II) oxygenase family protein	pseudogene of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G24652.1	pseudogene		Pseudogene of AT4G20330; transcription initiation factor-related	pseudogene of Transcription initiation factor TFIIE;(source:Araport11)
AT4G24977.1	pseudogene		Pseudogene of AT4G24972; TPD1 (TAPETUM DETERMINANT 1)	pseudogene of tapetum determinant 1;(source:Araport11)
AT4G25170.2	protein_coding	Uncharacterised conserved protein (UCP012943)		Uncharacterized conserved protein (UCP012943);(source:Araport11)
AT4G25610.2	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT4G26455.1	protein_coding	WPP domain interacting protein 1	Encodes an outer nuclear membrane protein that anchors RanGAP1 to the nuclear envelope.  It interacts with SUN proteins and is required for maintaining the elongated nuclear shape of epidermal cells.	WPP domain interacting protein 1;(source:Araport11)
AT4G27010.2	protein_coding			ribosome 60S biogenesis amino-terminal protein;(source:Araport11)
AT4G27590.2	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G28990.2	protein_coding	RNA-binding protein-related		RNA-binding protein-like protein;(source:Araport11)
AT4G29020.2	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G29276.1	pseudogene		Pseudogene of AT4G29270; acid phosphatase class B family protein	pseudogene of HAD superfamily;(source:Araport11)
AT4G29281.1	pseudogene		Pseudogene of AT4G29270; acid phosphatase class B family protein	pseudogene of HAD superfamily;(source:Araport11)
AT4G29580.2	protein_coding	Cytidine/deoxycytidylate deaminase family protein		Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT4G29735.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G29770.2	protein_coding		Target of trans acting-siR480/255. Testing.	target of trans acting-siR480/255 protein;(source:Araport11)
AT4G30660.2	protein_coding	Low temperature and salt responsive protein family		Low temperature and salt responsive protein family;(source:Araport11)
AT4G30990.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G31350.2	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G32620.2	protein_coding	Enhancer of polycomb-like transcription factor protein	Polycomb related protein that is part of a protein complex involved in histone deacetylation and heterochromatin silencing.	Enhancer of polycomb-like transcription factor protein;(source:Araport11)
AT4G32820.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G33150.3	protein_coding	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme	This is a splice variant of the LKR/SDH locus. It encodes the monofunctional saccharopine dehydrogenase involved in lysine degradation. Another splice variant of the same LKR/SDH locus encodes a bifunctional protein which also has saccharopine dehydrogenase activity. The monofunctional SDH functions mainly to enhance the flux of lysine catabolism. Gene expression is induced by abscisic acid, jasmonate, and under sucrose starvation.	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme;(source:Araport11)
AT4G33330.2	protein_coding	plant glycogenin-like starch initiation protein 3	Encodes a glucuronyltransferase responsible  for the addition of GlcA residues onto xylan and for secondary wall deposition.	plant glycogenin-like starch initiation protein 3;(source:Araport11)
AT4G33740.3	protein_coding			myb-like protein X;(source:Araport11)
AT4G33925.2	protein_coding		Encodes SSN2 (suppressor of sni1 2), a suppressor of SNI1 (AT4G18470).  SSN2 contains a SWIM (SWI2/SNF2 and MuDR) domain found in a variety of prokaryotic and eukaryotic proteins.  Involved in plant immune response and homologous recombination.	zinc finger SWIM domain protein;(source:Araport11)
AT4G34065.1	pseudogene		Pseudogene of AT5G06265; hyaluronan mediated motility receptor-related	pseudogene of hyaluronan mediated motility receptor-like protein;(source:Araport11)
AT4G35300.3	protein_coding	tonoplast monosaccharide transporter2		tonoplast monosaccharide transporter2;(source:Araport11)
AT4G35731.1	pseudogene		Pseudogene of AT2G26160	pseudogene of F-box SKIP23-like protein (DUF295);(source:Araport11)
AT4G35785.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G36800.2	protein_coding	RUB1 conjugating enzyme 1	RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.	RUB1 conjugating enzyme 1;(source:Araport11)
AT4G36960.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G37022.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G38590.2	protein_coding	beta-galactosidase 14	putative beta-galactosidase (BGAL14 gene)	beta-galactosidase 14;(source:Araport11)
AT4G39420.2	protein_coding			spatacsin carboxy-terminus protein;(source:Araport11)
AT5G01010.2	protein_coding			retinal-binding protein;(source:Araport11)
AT5G01010.3	protein_coding			retinal-binding protein;(source:Araport11)
AT5G01390.3	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT5G01390.4	protein_coding	DNAJ heat shock family protein		DNAJ heat shock family protein;(source:Araport11)
AT5G01650.2	protein_coding	Tautomerase/MIF superfamily protein		Tautomerase/MIF superfamily protein;(source:Araport11)
AT5G02244.1	pseudogene		Pseudogene of AT3G57870; AHUS5 (SUMO CONJUGATION ENZYME 1); ubiquitin-protein ligase	pseudogene of sumo conjugation enzyme 1;(source:Araport11)
AT5G03040.2	protein_coding	IQ-domain 2	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 2;(source:Araport11)
AT5G03560.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G03858.1	pseudogene		Pseudogene of AT5G03960; IQD12 (IQ-domain 12); calmodulin binding protein	pseudogene of IQ-domain 12;(source:Araport11)
AT5G04050.2	protein_coding	RNA-directed DNA polymerase (reverse transcriptase)		RNA-directed DNA polymerase (reverse transcriptase);(source:Araport11)
AT5G04781.1	pseudogene		Pseudogene of AT1G75170; SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	pseudogene of Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G06634.1	pseudogene		Pseudogene of AT5G06650; GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding / transcription factor/ zinc ion binding	pseudogene of C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G06755.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G07350.2	protein_coding	TUDOR-SN protein 1	RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting  on mRNAs entering the secretory pathway. Functionally redundant with TSN2.	TUDOR-SN protein 1;(source:Araport11)
AT5G08130.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix-loop-helix (bHLH) family protein BIM1 (BES1-INTERACTING MYC-LIKE 1), involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G09330.4	protein_coding	NAC domain containing protein 82		NAC domain containing protein 82;(source:Araport11)
AT5G09876.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G09976.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G10140.3	protein_coding	K-box region and MADS-box transcription factor family protein 	MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3? to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G11030.2	protein_coding	aberrant lateral root formation 4	alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.	aberrant root formation protein;(source:Araport11)
AT5G11030.3	protein_coding	aberrant lateral root formation 4	alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.	aberrant root formation protein;(source:Araport11)
AT5G11200.2	protein_coding	DEAD/DEAH box RNA helicase family protein 	One of two genes encoding an ATP-dependent RNA helicase that localizes predominantly to euchromatic regions of Arabidopsis nuclei, and associates with genes transcribed by RNA polymerase II independently from the presence of introns.  It is not detected at non-transcribed loci. It interacts with ssRNA, dsRNA and dsDNA, but not with ssDNA. Its ATPase activity is stimulated by RNA and dsDNA and its ATP-dependent RNA helicase activity unwinds dsRNA but not dsDNA.	DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT5G11200.3	protein_coding	DEAD/DEAH box RNA helicase family protein 	One of two genes encoding an ATP-dependent RNA helicase that localizes predominantly to euchromatic regions of Arabidopsis nuclei, and associates with genes transcribed by RNA polymerase II independently from the presence of introns.  It is not detected at non-transcribed loci. It interacts with ssRNA, dsRNA and dsDNA, but not with ssDNA. Its ATPase activity is stimulated by RNA and dsDNA and its ATP-dependent RNA helicase activity unwinds dsRNA but not dsDNA.	DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT5G11360.3	protein_coding	Interleukin-1 receptor-associated kinase 4 protein		Interleukin-1 receptor-associated kinase 4 protein;(source:Araport11)
AT5G11700.2	protein_coding			ephrin type-B receptor;(source:Araport11)
AT5G12280.2	protein_coding	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein		SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein;(source:Araport11)
AT5G12920.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G13000.2	protein_coding	glucan synthase-like 12	encodes a gene similar to callose synthase	glucan synthase-like 12;(source:Araport11)
AT5G13220.4	protein_coding	jasmonate-zim-domain protein 10	Encodes JAZ10, a member of the JASMONATE ZIM-domain (JAZ) proteins acting as repressors of jasmonate (JA) signaling. An alternatively spliced form (JAZ10.4) of JAZ10 lacks the Jas domain.	jasmonate-zim-domain protein 10;(source:Araport11)
AT5G13548.1	pseudogene		Pseudogene of AT3G12600; ATNUDT16 (Arabidopsis thaliana Nudix hydrolase homolog 16); hydrolase	pseudogene of nudix hydrolase homolog 16;(source:Araport11)
AT5G16336.1	pseudogene		Pseudogene of AT5G16360; NC domain-containing protein	pseudogene of NC domain-containing protein-like protein;(source:Araport11)
AT5G16940.2	protein_coding	carbon-sulfur lyases		carbon-sulfur lyase;(source:Araport11)
AT5G17230.3	protein_coding	PHYTOENE SYNTHASE	Encodes phytoene synthase that is the rate-limiting enzyme in the carotenoid biosynthetic pathway and that interacts with the ORANGE (OR) protein.  PSY's expression is posttransciptionally regulated by OR.	PHYTOENE SYNTHASE;(source:Araport11)
AT5G18230.2	protein_coding	transcription regulator NOT2/NOT3/NOT5 family protein		transcription regulator NOT2/NOT3/NOT5 family protein;(source:Araport11)
AT5G18720.2	protein_coding	Domain of unknown function (DUF3444)		DNAJ heat shock amino-terminal domain protein, putative (DUF3444);(source:Araport11)
AT5G19090.3	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G19280.2	protein_coding	kinase associated protein phosphatase	kinase associated protein phosphatase composed of three domains: an amino-terminal signal anchor, a kinase interaction (KI) domain, and a type 2C protein phosphatase catalytic region	kinase associated protein phosphatase;(source:Araport11)
AT5G19380.2	protein_coding	CRT (chloroquine-resistance transporter)-like transporter 1	Encodes one of the CRT-Like transporters (CLT1/AT5G19380, CLT2/AT4G24460, CLT3/AT5G12170). Required for glutathione homeostasis and stress responses.  Mutants lacking these transporters are heavy metal-sensitive, glutathione(GSH)-deficient, and hypersensitive to Phytophthora infection.	CRT (chloroquine-resistance transporter)-like transporter 1;(source:Araport11)
AT5G19940.2	protein_coding	Plastid-lipid associated protein PAP / fibrillin family protein		Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT5G20160.3	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT5G20490.2	protein_coding	Myosin family protein with Dil domain	Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. Required for fast root hair growth. This gene appears to be expressed at low levels throughout the plant.	myosin family protein with Dil;(source:Araport11)
AT5G20570.2	protein_coding	RING-box 1	Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.	RING-box 1;(source:Araport11)
AT5G20570.3	protein_coding	RING-box 1	Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.	RING-box 1;(source:Araport11)
AT5G20660.2	protein_coding	Zn-dependent exopeptidases superfamily protein		Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT5G20680.3	protein_coding	TRICHOME BIREFRINGENCE-LIKE 16	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 16;(source:Araport11)
AT5G21105.2	protein_coding	Plant L-ascorbate oxidase		Plant L-ascorbate oxidase;(source:Araport11)
AT5G22620.2	protein_coding	phosphoglycerate/bisphosphoglycerate mutase family protein	encodes a putative 2-carboxy-D-arabinitol 1-phosphate phosphatase	phosphoglycerate/bisphosphoglycerate mutase family protein;(source:Araport11)
AT5G22791.2	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT5G22794.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G24065.1	pseudogene		Pseudogene of AT5G24065	pseudogene of Ycf1 protein;(source:Araport11)
AT5G24580.3	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G24630.2	protein_coding	double-stranded DNA binding	This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	double-stranded DNA binding protein;(source:Araport11)
AT5G24630.3	protein_coding	double-stranded DNA binding	This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	double-stranded DNA binding protein;(source:Araport11)
AT5G24630.4	protein_coding	double-stranded DNA binding	This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	double-stranded DNA binding protein;(source:Araport11)
AT5G24630.5	protein_coding	double-stranded DNA binding	This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	double-stranded DNA binding protein;(source:Araport11)
AT5G24630.6	protein_coding	double-stranded DNA binding	This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	double-stranded DNA binding protein;(source:Araport11)
AT5G25451.1	pseudogene		Pseudogene of AT5G25440; protein kinase family protein	pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT5G26680.2	protein_coding	5'-3' exonuclease family protein	Encodes a FEN1 homolog that has double-flap endonuclease activity, weak GEN activity towards bubble DNA structures and flap endonuclease activity towards substrates with a single-flap structure, but lacks the 5&#8242; exonuclease activity towards DNA substrates with a nick on one strand, and GEN activity towards gapped DNA without any flap. It is expressed in rapidly dividing cells and mutants have smaller roots and hypocotyls.	5-3 exonuclease family protein;(source:Araport11)
AT5G26749.1	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G27300.2	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT5G27860.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G28646.2	protein_coding	TPX2 (targeting protein for Xklp2) protein family	Encodes a novel protein. The wvd2 gain-of-function mutant has impaired cell expansion and root waving, and changed root skewing.	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT5G28917.1	pseudogene		Pseudogene of AT1G40087	pseudogene of Plant transposase (Ptta/En/Spm family);(source:Araport11)
AT5G32690.1	pseudogene		Pseudogene of AT2G29880	pseudogene of Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT5G35180.4	protein_coding	Protein of unknown function (DUF1336)		ENHANCED DISEASE RESISTANCE protein (DUF1336);(source:Araport11)
AT5G35603.2	protein_coding	Protein of unknown function (DUF3287)		hypothetical protein (DUF3287);(source:Araport11)
AT5G37017.1	pseudogene		Pseudogene of AT5G16486	pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT5G37352.1	pseudogene		Pseudogene of AT2G25010	pseudogene of Aminotransferase-like;(source:Araport11)
AT5G37370.3	protein_coding	PRP38 family protein	encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	PRP38 family protein;(source:Araport11)
AT5G37780.2	protein_coding	calmodulin 1	encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.	calmodulin 1;(source:Araport11)
AT5G37780.3	protein_coding	calmodulin 1	encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.	calmodulin 1;(source:Araport11)
AT5G38096.1	pseudogene		Pseudogene of AT5G38100; methyltransferase-related protein	pseudogene of S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G39532.1	pseudogene		Pseudogene of AT3G59455	pseudogene of Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G40212.1	pseudogene		Pseudogene of AT5G40240; nodulin MtN21 family protein	pseudogene of nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G40810.2	protein_coding	Cytochrome C1 family		Cytochrome C1 family;(source:Araport11)
AT5G41491.1	pseudogene		Pseudogene of AT2G38420; pentatricopeptide (PPR) repeat-containing protein	pseudogene of Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G41740.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G42000.2	protein_coding	ORMDL family protein		ORMDL family protein;(source:Araport11)
AT5G42323.1	pseudogene		Pseudogene of AT1G06390; GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); kinase	pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT5G42568.1	pseudogene		Pseudogene of AT1G47830; clathrin coat assembly protein, putative	pseudogene of SNARE-like superfamily protein;(source:Araport11)
AT5G42677.1	pseudogene		Pseudogene of AT5G19630	pseudogene of alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G43196.1	pseudogene		Pseudogene of AT5G43210; endo/excinuclease amino terminal domain-containing protein	pseudogene of Zinc finger;(source:Araport11)
AT5G43822.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein	Encodes an essential protein of unknown function.OPNR is expressed in rapidly dividing cells and may function in cell cycle progression. It is expressed in mitochondria and the nuclear envelope.   Loss of function results in embryo lethality and reduced transmission through the female.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G44280.2	protein_coding	RING 1A	Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.	RING 1A;(source:Araport11)
AT5G44570.2	protein_coding		Encodes a PPR protein involved in mitochondrial functioning. Mutants suppress cell wall defects caused by C17 chemical inhibitor. Mutants are defective in cytochrome c maturation and activation of mitochondrial retrograde signalling.	transmembrane protein;(source:Araport11)
AT5G45190.2	protein_coding	Cyclin family protein	Encodes a cyclin T partner CYCT1;5.  Plays important roles in infection with Cauliflower mosaic virus (CaMV).	Cyclin family protein;(source:Araport11)
AT5G47455.7	protein_coding			hypothetical protein;(source:Araport11)
AT5G47900.4	protein_coding	Protein of unknown function (DUF1624)		heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G47900.5	protein_coding	Protein of unknown function (DUF1624)		heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G47900.6	protein_coding	Protein of unknown function (DUF1624)		heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G48090.2	protein_coding	EDM2-like protein1		EDM2-like protein1;(source:Araport11)
AT5G48240.3	protein_coding			Rrp15p protein;(source:Araport11)
AT5G48720.2	protein_coding	x-ray induced transcript 1	Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray.  Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.	x-ray induced transcript 1;(source:Araport11)
AT5G49301.1	pseudogene		Pseudogene of AT5G49310; importin alpha-1 subunit, putative	pseudogene of importin alpha isoform 5;(source:Araport11)
AT5G49830.2	protein_coding	exocyst complex component 84B	Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.	exocyst complex component 84B;(source:Araport11)
AT5G49830.3	protein_coding	exocyst complex component 84B	Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.	exocyst complex component 84B;(source:Araport11)
AT5G50111.1	pseudogene		Pseudogene of AT5G50120; transducin family protein / WD-40 repeat family protein	pseudogene of Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G52040.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes an arginine/serine-rich splicing factor. Transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS41 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G52040.4	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes an arginine/serine-rich splicing factor. Transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS41 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G52067.1	pseudogene		Pseudogene of AT3G43280	pseudogene of hypothetical protein;(source:Araport11)
AT5G52800.3	protein_coding	DNA primases	primase/polymerase protein	DNA primase;(source:Araport11)
AT5G53300.3	protein_coding	ubiquitin-conjugating enzyme 10	Encodes a ubiquitin conjugating enzyme.	ubiquitin-conjugating enzyme 10;(source:Araport11)
AT5G53570.2	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT5G54148.1	protein_coding			sarcosine dehydrogenase-2C protein;(source:Araport11)
AT5G54661.1	pseudogene		Pseudogene of AT5G54660; heat shock protein-related	pseudogene of HSP20-like chaperones superfamily protein;(source:Araport11)
AT5G55160.2	protein_coding	small ubiquitin-like modifier 2	Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays.	small ubiquitin-like modifier 2;(source:Araport11)
AT5G55180.2	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G55290.2	protein_coding	ATPase, V0 complex, subunit E		ATPase, V0 complex, subunit E;(source:Araport11)
AT5G55850.2	protein_coding	RPM1-interacting protein 4 (RIN4) family protein	NOI protein	RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT5G56061.1	pseudogene		Pseudogene of AT5G56050	pseudogene of late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G57360.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein	Encodes clock-associated PAS protein ZTL; Also known as FKF1-like protein 2 or ADAGIO1(ADO1). A protein containing a PAS domain  ZTL contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. ZTL is the F-box component of an SCF complex implicated in the degradation of TOC1.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G57700.4	protein_coding	BNR/Asp-box repeat family protein		BNR/Asp-box repeat family protein;(source:Araport11)
AT5G58060.2	protein_coding	SNARE-like superfamily protein	member of YKT6 Gene Family	SNARE-like superfamily protein;(source:Araport11)
AT5G58790.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G58790.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G59610.2	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G59980.2	protein_coding	Polymerase/histidinol phosphatase-like	Encodes a predicted protein subunit of RNases P/MRP that plays a role in female gametophyte development and male competence.	Polymerase/histidinol phosphatase-like protein;(source:Araport11)
AT5G61495.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G62640.3	protein_coding	proline-rich family protein	nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC	proline-rich family protein;(source:Araport11)
AT5G63320.2	protein_coding	nuclear protein X1	Encodes NPX1 (Nuclear Protein X1), a nuclear factor regulating abscisic acid responses.	nuclear protein X1;(source:Araport11)
AT5G63320.3	protein_coding	nuclear protein X1	Encodes NPX1 (Nuclear Protein X1), a nuclear factor regulating abscisic acid responses.	nuclear protein X1;(source:Araport11)
AT5G63550.2	protein_coding	DEK domain-containing chromatin associated protein		DEK domain-containing chromatin associated protein;(source:Araport11)
AT5G63941.1	pseudogene		Pseudogene of AT5G09270	pseudogene of transmembrane protein;(source:Araport11)
AT5G64540.3	protein_coding			mucin-like protein;(source:Araport11)
AT5G64680.3	protein_coding			mediator-associated protein;(source:Araport11)
AT5G65005.1	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G65020.2	protein_coding	annexin 2	Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane.  They may be involved in the Golgi-mediated secretion of polysaccharides.	annexin 2;(source:Araport11)
AT5G65770.2	protein_coding	little nuclei4	Encodes a protein that localizes to the nuclear periphery and affects nuclear morphology. Member of a small gene family in Arabidopsis containing 4 proteins (LNC1-4 or CRWN 1-4) with redundant functions in protection from oxidative damage, control of nuclear morphology and degradation of ABI5.	little nuclei4;(source:Araport11)
AT5G66930.3	protein_coding			meiotically up-regulated protein;(source:Araport11)
LMS10	unknown			
LMS11	unknown			
LMS12	unknown			
LMS2	unknown			
LMS3	unknown			
LMS4	unknown			
LMS5	unknown			
LMS6	unknown			
LMS7	unknown			
LMS8	unknown			
LMS9	unknown			
MEN1	unknown			
MEN2	unknown			
MEN4	unknown			
MEN5	unknown			
MEN6	unknown			
LIKE6	unknown			
MEN3	unknown			
ARS1	unknown		Unclones locus involved in increased tolerance to arsenate and increased phosphate uptake.	
AtCYB5	unknown			
IL1	unknown			
AtBCAT1	unknown			
AtHMG1	unknown			
AtSBT5	unknown			
CBM9	unknown			
CLI186	unknown			
CR143	unknown			
EDS11	unknown	Genetic locus involved in resistance to the cereal ear blight fungal pathogen Fusarium culmorum.  The eds11 mutation complemented nine other previously characterised eds mutations as well as the npr1 mutation, indicating that EDS11 is not an allele of any	EDS11 is involved in basal defense response against the cereal ear blight fungal pathogen Fusarium culmorum.	
HL1	unknown			
IS10	unknown			
ISSR3	unknown			
KSC20	unknown			
LIF1	unknown			
LL1	unknown		Genetic locus that maps to chromosome 1 between markers nga111 and nga280.	
LL2	unknown		Genetic locus that maps to chromosome 2 between markers AthB102 and nga1126.	
LSK1	unknown			
MADS45	unknown			
MEM1	unknown			
MS3	unknown			
PRP38	unknown			
RAP1	unknown			
TIP60	unknown			
XL1	unknown			
XTH2	unknown			
CDPK24	unknown			
KBF1	unknown			
SAD7	unknown			
ANU08	unknown			
AtDIM1	unknown			
AtDOF6	unknown			
AtGAAP1	unknown			
AtGAAP2	unknown			
AtGAAP3	unknown			
AtGAAP4	unknown			
AtGLIP1	unknown			
AtLEA18	unknown			
AtMAP20	unknown			
AtNACL10	unknown			
AtNACL8	unknown			
AtPP1	unknown			
AtPTBL1	unknown			
BASS1	unknown			
BDL1	unknown			
CGM1	unknown			
CLI1	unknown			
DDD1	unknown			
DUO4	unknown			
ENS2	unknown			
ERF16	unknown			
FH8	unknown			
HDAC6	unknown			
ILT3	unknown			
JRF1	unknown			
LAB1	unknown			
LRA8	unknown			
LRIP1	unknown			
PHOT12	unknown			
PRC4	unknown			
RIL212	unknown			
ROB1	unknown			
RSRP1	unknown			
SIM2	unknown			
SMR4	unknown			
SPP4	unknown			
SPS4	unknown			
SPS5	unknown			
SSV1	unknown			
SUC6	unknown			
SUC7	unknown			
SUC8	unknown			
SUC9	unknown			
SYT3	unknown			
TW20	unknown			
UPOX1	unknown			
XSP30	unknown			
DEP2	unknown			
DEP3	unknown			
DEP4	unknown			
DEP5	unknown			
DEP6	unknown			
ELEM1	unknown			
SNP7	unknown			
TID1	unknown			
AtAKT2	unknown			
AtKAT2	unknown			
AtKUP9	unknown			
BHQ1	unknown			
FKBP16	unknown			
NY7	unknown			
CHS9	unknown			
GIA3	unknown		A recessive locus in Arabidopsis mediating cotyledon cellular maturation and ABA-dependent repression of cotyledon expansion and greening.  Fine mapping localized the gia3 locus within a 1 Mb interval of chromosome 3, containing a large DNA insertion of a duplicated region of chromosome 2.	
SC748	unknown			
CHL612	unknown			
CHL613	unknown			
CHL614	unknown			
DRR1	unknown			
DRM1	unknown			
LIKE11	unknown			
MCC1	unknown			
MEP1	unknown			
ORT1	unknown			
RU1	unknown			
RU2	unknown			
YA4	unknown			
AtNST1	unknown			
AtYLMG1	unknown			
AKH2	unknown			
ALAC1	unknown			
AMF2	unknown			
ASL15	unknown			
ASL24	unknown			
ATDS1	unknown			
AtAC1	unknown			
AtAC2	unknown			
AtATF1	unknown			
AtATF2	unknown			
AtATF3	unknown			
AtCPK9	unknown			
AtCRT2	unknown			
AtFIS2	unknown			
AtLYM3	unknown			
AtMYB77	unknown			
AtPRN1	unknown			
AtPRN2	unknown			
AtPRN3	unknown			
AtPRN4	unknown			
AtRIR1	unknown			
AtTIM50	unknown			
AtVMA12	unknown			
AtVMA22	unknown			
BAP228	unknown			
BOR3	unknown			
BOR6	unknown			
BOU2	unknown			
CPD2	unknown			
CTFF1	unknown			
CYP88	unknown			
DAL6	unknown			
DBR4	unknown			
DH5	unknown			
DPT3	unknown			
ECU72	unknown			
FOL4	unknown			
GIP3	unknown			
GLUE1	unknown			
HARG1	unknown			
HT2	unknown			
HWC1	unknown			
HWC2	unknown			
INS1	unknown			
INS2	unknown			
JMJ19	unknown			
LFAG1	unknown			
LPD2	unknown			
MG1	unknown			
MMF2	unknown			
MPER417	unknown			
MST8	unknown			
NKJ1	unknown			
NPP2	unknown			
NPP6	unknown			
NSL2	unknown			
NUDX23	unknown			
PABN2	unknown			
PABN3	unknown			
PCAR3	unknown			
PHY0	unknown			
PI1	unknown			
PNPC3	unknown			
PNPC4	unknown			
PUF1	unknown			
PUF3	unknown			
PX1	unknown			
QRAP2	unknown			
RACR3	unknown			
RDR4	unknown			
RDR5	unknown			
RGAT1	unknown			
RID4	unknown			
RLI1	unknown			
RSB2	unknown	Maps near nga112.		
SAL14	unknown			
SAL4	unknown			
SAL54	unknown			
SLTI629	unknown			
SNT1	unknown			
SO42	unknown			
THM1	unknown			
THM2	unknown			
THM4	unknown			
TLP4	unknown			
TSC2	unknown			
TSC4	unknown			
UGT3	unknown			
WAP2	unknown			
WAR1	unknown			
WRP1	unknown			
XS2	unknown			
ZN607	unknown			
ETR3	unknown			
MEF18	unknown			
MEF22	unknown			
SYV46	unknown			
AT4G16730-Ws	protein_coding		Encodes a chloroplast-localized terpene synthase in the Ws ecotype. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present. At the corresponding locus (At4g16730) in the Col ecotype, no functional protein is encoded due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon that leads to a frame shift and premature translational termination.	
iop	unknown			Mutant isolated in a screen for overexpression of the plant defensin PDF1.2
AtMDK4	unknown			
AtMET1	unknown			
LENC1	unknown		The initial mapping using genetic markers showed that lenc1 mutation is located on the long arm of chromosome 4. lenc1 = low expression of NCED3 1	
MDK4	unknown			
HVR2	unknown			
AT1G01040.2	protein_coding	dicer-like 1	Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. The mRNA is cell-to-cell mobile.	dicer-like 1;(source:Araport11)
AT1G01060.5	protein_coding	Homeodomain-like superfamily protein	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	Homeodomain-like superfamily protein;(source:Araport11)
AT1G01260.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	bHLH13 interacts with JAZ proteins, and functions redundantly with bHLH3, bHLH14 and bHLH17 to negatively regulate jasmonate responses.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G01320.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes REDUCED CHLOROPLAST COVERAGE 1 (REC1). Located in the nucleus and cytosol. Contributes to establishing the size of the chloroplast compartment.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G01340.2	protein_coding	cyclic nucleotide gated channel 10	member of Cyclic nucleotide gated channel family	cyclic nucleotide gated channel 10;(source:Araport11)
AT1G01740.2	protein_coding	Protein kinase protein with tetratricopeptide repeat domain		kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT1G01880.2	protein_coding	5'-3' exonuclease family protein	Encodes one of two GEN1 homologs in Arabidopsis.  It is a member of the class IV Rad2/XPG family of nucleases that processes Holliday junctions in a manner analogous to the HJ resolvases of phages, archaea, and bacteria.	5-3 exonuclease family protein;(source:Araport11)
AT1G02010.2	protein_coding	secretory 1A	member of KEULE Gene Family	secretory 1A;(source:Araport11)
AT1G02080.2	protein_coding	transcription regulators	Acts as scaffold protein in the CCR4-NOT complex, by interacting with various NOT proteins and CAF1.	transcription regulator;(source:Araport11)
AT1G02205.3	protein_coding	Fatty acid hydroxylase superfamily	Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined.	Fatty acid hydroxylase superfamily;(source:Araport11)
AT1G02575.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G02750.2	protein_coding	Drought-responsive family protein		Drought-responsive family protein;(source:Araport11)
AT1G02930.2	protein_coding	glutathione S-transferase 6	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase 6;(source:Araport11)
AT1G02990.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G03040.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G03070.2	protein_coding	Bax inhibitor-1 family protein		Bax inhibitor-1 family protein;(source:Araport11)
AT1G03250.2	protein_coding			R3H domain protein;(source:Araport11)
AT1G03290.2	protein_coding			ELKS/Rab6-interacting/CAST family protein;(source:Araport11)
AT1G03365.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G03545.1	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT1G03550	Natural antisense transcript overlaps with AT1G03550;(source:Araport11)
AT1G03770.2	protein_coding	RING 1B	Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.	RING 1B;(source:Araport11)
AT1G03770.3	protein_coding	RING 1B	Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.	RING 1B;(source:Araport11)
AT1G03780.3	protein_coding	targeting protein for XKLP2	Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.	targeting protein for XKLP2;(source:Araport11)
AT1G03830.2	protein_coding	guanylate-binding family protein		guanylate-binding family protein;(source:Araport11)
AT1G03910.2	protein_coding		Encodes the Arabidopsis homolog of a conserved eukaryotic protein without known functional domains.  The protein that localizes to nuclear speckles and colocalizes with known splicing proteins.	cactus-binding carboxy-terminal, cactin;(source:Araport11)
AT1G04080.3	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a U1 small nuclear ribonucleoprotein (snRNP) factor involved in alternative splicing.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G04120.2	protein_coding	multidrug resistance-associated protein 5	encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C.	multidrug resistance-associated protein 5;(source:Araport11)
AT1G04300.4	protein_coding	TRAF-like superfamily protein	Encodes MUSE13, a TRAF domain protein. Regulates the turnover of nucleotide-binding domain and leucine-rich repeat-containing (NLR) immune receptors SNC1 and RPS2. Loss of both MUSE13 and MUSE14 leads to enhanced pathogen resistance, NLR accumulation, and autoimmunity.In addition, MUSE13/14 physically interact with ATG6 and appear to regulate ATG6 ubiquitination and thus formation of autophagosomes.	TRAF-like superfamily protein;(source:Araport11)
AT1G04830.2	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT1G04930.2	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G04945.3	protein_coding	HIT-type Zinc finger family protein		HIT-type Zinc finger family protein;(source:Araport11)
AT1G05230.4	protein_coding	homeodomain GLABROUS 2	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes.  The mutations do not affect trichome growth or branch number.	homeodomain GLABROUS 2;(source:Araport11)
AT1G05550.3	protein_coding	Protein of unknown function (DUF295)	DUF295 domain protein of unknown function. Expressed in ovule integuments and nucellus.	hypothetical protein (DUF295);(source:Araport11)
AT1G05562.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G05560;(source:Araport11)
AT1G05570.2	protein_coding	callose synthase 1	Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.	callose synthase 1;(source:Araport11)
AT1G05600.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G05675.1	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G05710.5	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G05870.3	protein_coding	Protein of unknown function (DUF1685)		hypothetical protein (DUF1685);(source:Araport11)
AT1G05870.4	protein_coding	Protein of unknown function (DUF1685)		hypothetical protein (DUF1685);(source:Araport11)
AT1G05880.2	protein_coding	RING/U-box superfamily protein	Encodes ARI12 (ARIADNE 12). ARI12 belongs to a family of ‘RING between RING fingers' (RBR) domain proteins with E3 ligase activity. Expression of ARI12 is induced by UV-B exposure.	RING/U-box superfamily protein;(source:Araport11)
AT1G05890.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G06002.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G06000;(source:Araport11)
AT1G06150.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a LHW-like protein with 79% amino acid identity to LHW.	basic helix loop helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G06230.3	protein_coding	global transcription factor group E4	This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.	global transcription factor group E4;(source:Araport11)
AT1G06420.2	protein_coding			DNA ligase-like protein;(source:Araport11)
AT1G06750.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G06780.2	protein_coding	galacturonosyltransferase 6	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 6;(source:Araport11)
AT1G06890.3	protein_coding	nodulin MtN21 /EamA-like transporter family protein	UXT3 is a member of the NST-KT subfamily  of nucleotide/sugar transporters. It is localized to the golgi and functions as a UDP-Xyl transporter.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G07128.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G07130;(source:Araport11)
AT1G07150.2	protein_coding	mitogen-activated protein kinase kinase kinase 13	member of MEKK subfamily	mitogen-activated protein kinase kinase kinase 13;(source:Araport11)
AT1G07170.3	protein_coding	PHF5-like protein	Similar to human splicing factor 3b, 14 kda subunit, SF3b14b.	PHF5-like protein;(source:Araport11)
AT1G07570.3	protein_coding	Protein kinase superfamily protein	Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues	Protein kinase superfamily protein;(source:Araport11)
AT1G07650.2	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G07780.5	protein_coding	phosphoribosylanthranilate isomerase 1	Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family. The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT1G07870.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G08125.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G08125.3	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G08420.2	protein_coding	BRI1 suppressor 1 (BSU1)-like 2		BRI1 suppressor 1 (BSU1)-like 2;(source:Araport11)
AT1G08450.3	protein_coding	calreticulin 3	Encodes one of three Arabidopsis calreticulins.   In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the  presence of elf18, and EFR accumulation and signalling.	calreticulin 3;(source:Araport11)
AT1G08592.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G08590;(source:Araport11)
AT1G08600.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	The Arabidopsis ATRX harbours a N-terminal ADD domain and a C-terminal helicase domain and is devoid of the large central region involved in DAXX interaction in mammals. Arabidopsis ATRX mutant alleles are viable, but with reduced fertility. Their combination with mutants for the H3.3 chaperone HIRA impairs plant survival. ATRX loss affects cellular histone H3.3 pools and modulates the H3.1/H3.3 balance. Notably, at a genome-wide scale, loss of ATRX leads to a reduced H3.3 level at genes characterized by elevated H3.3 occupancy and high expression, including the 45S ribosomal DNA (45S rDNA) loci. Indeed, expression of specific 45S rDNA sequence variants is altered by ATRX loss (DOI:10.1105/tpc.16.00877)	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G08600.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	The Arabidopsis ATRX harbours a N-terminal ADD domain and a C-terminal helicase domain and is devoid of the large central region involved in DAXX interaction in mammals. Arabidopsis ATRX mutant alleles are viable, but with reduced fertility. Their combination with mutants for the H3.3 chaperone HIRA impairs plant survival. ATRX loss affects cellular histone H3.3 pools and modulates the H3.1/H3.3 balance. Notably, at a genome-wide scale, loss of ATRX leads to a reduced H3.3 level at genes characterized by elevated H3.3 occupancy and high expression, including the 45S ribosomal DNA (45S rDNA) loci. Indeed, expression of specific 45S rDNA sequence variants is altered by ATRX loss (DOI:10.1105/tpc.16.00877)	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G08600.4	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	The Arabidopsis ATRX harbours a N-terminal ADD domain and a C-terminal helicase domain and is devoid of the large central region involved in DAXX interaction in mammals. Arabidopsis ATRX mutant alleles are viable, but with reduced fertility. Their combination with mutants for the H3.3 chaperone HIRA impairs plant survival. ATRX loss affects cellular histone H3.3 pools and modulates the H3.1/H3.3 balance. Notably, at a genome-wide scale, loss of ATRX leads to a reduced H3.3 level at genes characterized by elevated H3.3 occupancy and high expression, including the 45S ribosomal DNA (45S rDNA) loci. Indeed, expression of specific 45S rDNA sequence variants is altered by ATRX loss (DOI:10.1105/tpc.16.00877)	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G08620.2	protein_coding	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein		Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11)
AT1G08650.2	protein_coding	phosphoenolpyruvate carboxylase kinase 1	Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. The mRNA is cell-to-cell mobile.	phosphoenolpyruvate carboxylase kinase 1;(source:Araport11)
AT1G08680.4	protein_coding	ARF GAP-like zinc finger-containing protein ZIGA4	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.	ARF GAP-like zinc finger-containing protein ZIGA4;(source:Araport11)
AT1G08840.2	protein_coding	DNA replication helicase, putative	Encodes a homolog of human and yeast DNA2. Mutants have increased sensitivity to DNA damage stress.	DNA replication helicase;(source:Araport11)
AT1G09080.2	protein_coding	Heat shock protein 70 (Hsp 70) family protein		Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT1G09130.3	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT1G09195.2	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT1G09420.2	protein_coding	glucose-6-phosphate dehydrogenase 4	Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH.  The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein.  gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.	glucose-6-phosphate dehydrogenase 4;(source:Araport11)
AT1G09470.2	protein_coding		NEAP3 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.	myosin heavy chain, cardiac protein;(source:Araport11)
AT1G09640.2	protein_coding	Translation elongation factor EF1B, gamma chain		Translation elongation factor EF1B, gamma chain;(source:Araport11)
AT1G09710.2	protein_coding	Homeodomain-like superfamily protein	Paralog of DRMY1 with unknown function.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G09730.2	protein_coding	Cysteine proteinases superfamily protein	Encodes a SUMO protease that positively regulates the transition to flowering in long and short days.	Cysteine proteinases superfamily protein;(source:Araport11)
AT1G09794.1	protein_coding	Cox19 family protein (CHCH motif)		Cox19 family protein (CHCH motif);(source:Araport11)
AT1G10670.3	protein_coding	ATP-citrate lyase A-1	One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase.  Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.	ATP-citrate lyase A-1;(source:Araport11)
AT1G10670.4	protein_coding	ATP-citrate lyase A-1	One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase.  Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.	ATP-citrate lyase A-1;(source:Araport11)
AT1G10740.3	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G10740.4	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G11080.2	protein_coding	serine carboxypeptidase-like 31		serine carboxypeptidase-like 31;(source:Araport11)
AT1G11100.2	protein_coding	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related		SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT1G11125.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G11180.2	protein_coding	Secretory carrier membrane protein (SCAMP) family protein		Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT1G11230.2	protein_coding	Protein of unknown function (DUF761)		transmembrane protein, putative (DUF761);(source:Araport11)
AT1G11330.2	protein_coding	S-locus lectin protein kinase family protein		S-locus lectin protein kinase family protein;(source:Araport11)
AT1G11360.4	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT1G11610.2	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 18	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 18;(source:Araport11)
AT1G11720.2	protein_coding	starch synthase 3	Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).	starch synthase 3;(source:Araport11)
AT1G11750.2	protein_coding	CLP protease proteolytic subunit 6	One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).	CLP protease proteolytic subunit 6;(source:Araport11)
AT1G11820.2	protein_coding	O-Glycosyl hydrolases family 17 protein		O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT1G11840.6	protein_coding	glyoxalase I homolog	Encodes Ni+ dependent glyoxalase I homolog ATGLX1.	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein;(source:Araport11)
AT1G11860.3	protein_coding	Glycine cleavage T-protein family		Glycine cleavage T-protein family;(source:Araport11)
AT1G12220.2	protein_coding	Disease resistance protein (CC-NBS-LRR class) family	Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G12230.2	protein_coding	Aldolase superfamily protein		Aldolase superfamily protein;(source:Araport11)
AT1G12430.2	protein_coding	armadillo repeat kinesin 3	Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved  in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations.  It accumulates at the preprophase band (PPB) in a cell-cycle and microtubule-dependent manner and is most highly expressed in cells where the placement of the division plane (early embryogenesis, stomatal lineages) is critical.	armadillo repeat kinesin 3;(source:Araport11)
AT1G12672.2	protein_coding			thionin-like protein;(source:Araport11)
AT1G12740.2	protein_coding	cytochrome P450, family 87, subfamily A, polypeptide 2	encodes a protein with cytochrome P450 domain	cytochrome P450, family 87, subfamily A, polypeptide 2;(source:Araport11)
AT1G12750.3	protein_coding	RHOMBOID-like protein 6		RHOMBOID-like protein 6;(source:Araport11)
AT1G12855.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G12900.4	protein_coding	glyceraldehyde 3-phosphate dehydrogenase A subunit 2		glyceraldehyde 3-phosphate dehydrogenase A subunit 2;(source:Araport11)
AT1G13060.2	protein_coding	20S proteasome beta subunit E1	Encodes 20S proteasome beta subunit PBE1 (PBE1).	20S proteasome beta subunit E1;(source:Araport11)
AT1G13140.2	protein_coding	cytochrome P450, family 86, subfamily C, polypeptide 3	member of CYP86C	cytochrome P450, family 86, subfamily C, polypeptide 3;(source:Araport11)
AT1G13170.2	protein_coding	OSBP(oxysterol binding protein)-related protein 1D		OSBP(oxysterol binding protein)-related protein 1D;(source:Araport11)
AT1G13320.3	protein_coding	protein phosphatase 2A  subunit A3	one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)	protein phosphatase 2A subunit A3;(source:Araport11)
AT1G13350.2	protein_coding	Protein kinase superfamily protein	Paralog of PRP4KA.	Protein kinase superfamily protein;(source:Araport11)
AT1G13360.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G13360.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G13580.3	protein_coding	LAG1 longevity assurance homolog 3	Encodes a ceramide synthase that together with LOH1 is essential for production of ceramides containing Very Long Chain Fatty acid VLCFA-Ceramides(mainly C 22 to 26).	LAG1 longevity assurance-like protein;(source:Araport11)
AT1G13609.2	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G13630.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G13635.2	protein_coding	DNA glycosylase superfamily protein		DNA glycosylase superfamily protein;(source:Araport11)
AT1G13930.2	protein_coding		Involved in response to salt stress.  Knockout mutants are hypersensitive to salt stress. The mRNA is cell-to-cell mobile.	oleosin-B3-like protein;(source:Araport11)
AT1G13930.3	protein_coding		Involved in response to salt stress.  Knockout mutants are hypersensitive to salt stress. The mRNA is cell-to-cell mobile.	oleosin-B3-like protein;(source:Araport11)
AT1G13980.2	protein_coding	sec7 domain-containing protein	Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions. BFA inhibits GNOM trafficking and BFA resistant lines are more resistant to cold stress.	sec7 domain-containing protein;(source:Araport11)
AT1G14300.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT1G14480.2	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT1G14580.2	protein_coding	C2H2-like zinc finger protein		C2H2-like zinc finger protein;(source:Araport11)
AT1G14660.2	protein_coding	Na+/H+ exchanger 8	member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification.	Na+/H+ exchanger 8;(source:Araport11)
AT1G14840.2	protein_coding	microtubule-associated proteins 70-4	Encodes a microtubule associated protein (MAP70-4). Expressed in all tissues.	microtubule-associated proteins 70-4;(source:Araport11)
AT1G14940.2	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G14990.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G15002.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G15000;(source:Araport11)
AT1G15200.2	protein_coding	protein-protein interaction regulator family protein		protein-protein interaction regulator family protein;(source:Araport11)
AT1G15200.3	protein_coding	protein-protein interaction regulator family protein		protein-protein interaction regulator family protein;(source:Araport11)
AT1G15200.4	protein_coding	protein-protein interaction regulator family protein		protein-protein interaction regulator family protein;(source:Araport11)
AT1G15240.3	protein_coding	Phox-associated domain;Phox-like;Sorting nexin, C-terminal	Encodes a member of the Arabidopsis sorting nexin family.	phox (PX) domain-containing protein;(source:Araport11)
AT1G15340.2	protein_coding	methyl-CPG-binding domain 10	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain 10;(source:Araport11)
AT1G15590.2	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT1G15610.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G15860.3	protein_coding	Domain of unknown function (DUF298)		defective in cullin neddylation protein (DUF298);(source:Araport11)
AT1G16010.3	protein_coding	magnesium transporter 2	Transmembrane magnesium transporter. One of nine family members.	magnesium transporter 2;(source:Araport11)
AT1G16180.2	protein_coding	Serinc-domain containing serine and sphingolipid biosynthesis protein		Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT1G16260.2	protein_coding	Wall-associated kinase family protein		Wall-associated kinase family protein;(source:Araport11)
AT1G16270.2	protein_coding	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain		kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT1G16340.4	protein_coding	Aldolase superfamily protein	Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).	Aldolase superfamily protein;(source:Araport11)
AT1G16460.4	protein_coding	rhodanese homologue 2	encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast.  Can also act as a mercaptopyruvate sulfurtransferase.	rhodanese homologue 2;(source:Araport11)
AT1G16480.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G16610.3	protein_coding	arginine/serine-rich 45	Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.  Also involved in plant sugar response.  sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.	arginine/serine-rich 45;(source:Araport11)
AT1G16635.1	other_rna			other_RNA;(source:Araport11)
AT1G16710.2	protein_coding	histone acetyltransferase of the CBP family 12	Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates.  No  single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides,  suggesting that HAC12 can acetylate any  of several lysines present in the peptides.	histone acetyltransferase of the CBP family 12;(source:Araport11)
AT1G16820.2	protein_coding	vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related		vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein;(source:Araport11)
AT1G16890.3	protein_coding	ubiquitin-conjugating enzyme 36	UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.	ubiquitin-conjugating enzyme 36;(source:Araport11)
AT1G17040.2	protein_coding	SH2 domain protein A	Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.	SH2 domain protein A;(source:Araport11)
AT1G17110.2	protein_coding	ubiquitin-specific protease 15	Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant.	ubiquitin-specific protease 15;(source:Araport11)
AT1G17200.2	protein_coding	Uncharacterised protein family (UPF0497)		Uncharacterized protein family (UPF0497);(source:Araport11)
AT1G17232.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17230;(source:Araport11)
AT1G17410.2	protein_coding	Nucleoside diphosphate kinase family protein		Nucleoside diphosphate kinase family protein;(source:Araport11)
AT1G17450.2	protein_coding	B-block binding subunit of TFIIIC		B-block binding subunit of TFIIIC;(source:Araport11)
AT1G17460.2	protein_coding	TRF-like 3	Arabidopsis thaliana myb family transcription factor (At1g17460)	TRF-like 3;(source:Araport11)
AT1G17590.4	protein_coding	nuclear factor Y, subunit A8		nuclear factor Y, subunit A8;(source:Araport11)
AT1G17850.2	protein_coding	Rhodanese/Cell cycle control phosphatase superfamily protein		Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT1G18070.3	protein_coding	Translation elongation factor EF1A/initiation factor IF2gamma family protein		Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT1G18150.3	protein_coding	Protein kinase superfamily protein	Encodes mitogen-activated protein kinase 8 (MPK8).  MPK8 connects protein phosphorylation, Ca2+, and ROS in the wound-signaling pathway.	Protein kinase superfamily protein;(source:Araport11)
AT1G18270.3	protein_coding	ketose-bisphosphate aldolase class-II family protein		ketose-bisphosphate aldolase class-II family protein;(source:Araport11)
AT1G18700.4	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G18745.1	other_rna			other_RNA;(source:Araport11)
AT1G18900.3	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G19080.2	protein_coding	GINS complex protein	This gene is predicted to encode a PSF3 component of the GINS complex. This complex has been implicated in the initiation of DNA replication in Xenopus. Mutations in this gene cause defects in embryo development.	GINS complex protein;(source:Araport11)
AT1G19230.2	protein_coding	Riboflavin synthase-like superfamily protein		Riboflavin synthase-like superfamily protein;(source:Araport11)
AT1G19330.3	protein_coding		Evening-expressed key component of Sin3-HDAC complex, which bind directly to the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) and PSEUDO-RESPONSE REGULATOR 9 (PRR9) promoters and catalyze histone 3 (H3) deacetylation at the cognate regions to repress expression, allowing the declining phase of their expression at dusk.	histone deacetylase complex subunit;(source:Araport11)
AT1G19396.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G19396.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G19396.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G19485.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G19520.2	protein_coding	pentatricopeptide (PPR) repeat-containing protein	Ribosomal pentatricopeptide repeat protein	pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G19580.2	protein_coding	gamma carbonic anhydrase 1	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	gamma carbonic anhydrase 1;(source:Araport11)
AT1G19700.3	protein_coding	BEL1-like homeodomain 10	Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.	BEL1-like homeodomain 10;(source:Araport11)
AT1G19715.3	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G19835.2	protein_coding	Plant protein of unknown function (DUF869)	TCS1 encodes a coiled-coil domain protein that binds to microtubules and co-localizes with the cortical microtubules. Mutants have defects in trichome branching and hypocotyl elongation. TCS1 interacts with ZWI and appears to be involved in microtubule assembly.	filament-like protein (DUF869);(source:Araport11)
AT1G20130.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G20680.2	protein_coding	Protein of unknown function (DUF833)		transport/golgi organization-like protein (DUF833);(source:Araport11)
AT1G20691.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G20690;(source:Araport11)
AT1G20735.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G20880.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G20960.2	protein_coding	U5 small nuclear ribonucleoprotein helicase, putative	Similar to DEAD/DExH box ATP-dependent RNA helicase . Required for proper splicing of FLC. Mutants have reduced FLC levels and are early flowering.	U5 small nuclear ribonucleoprotein helicase;(source:Araport11)
AT1G21060.2	protein_coding	Protein of unknown function, DUF547		Serine/Threonine-kinase, putative (Protein of unknown function, DUF547);(source:Araport11)
AT1G21080.3	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G21529.1	other_rna		DRIR is a 755 nt long non coding RNA. Over-expression results in plants with increased salt and drought tolerance and ABA sensitivity. DRIR probably regulates the accumulation of genes involved in drought stress response. DRIR likely acts as a regulator of drought stress responsive gene expression.	other_RNA;(source:Araport11)
AT1G21560.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G21560.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G21610.3	protein_coding	wound-responsive family protein		wound-responsive family protein;(source:Araport11)
AT1G21630.2	protein_coding	Calcium-binding EF hand family protein	TPLATE Adaptor complex subunit.	Calcium-binding EF hand family protein;(source:Araport11)
AT1G21640.2	protein_coding	NAD kinase 2	Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.	NAD kinase 2;(source:Araport11)
AT1G21650.2	protein_coding	Preprotein translocase SecA family protein	Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid.  Loss-of-function mutations result in arrest at the globular stage and embryo lethality.	Preprotein translocase SecA family protein;(source:Araport11)
AT1G21650.3	protein_coding	Preprotein translocase SecA family protein	Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid.  Loss-of-function mutations result in arrest at the globular stage and embryo lethality.	Preprotein translocase SecA family protein;(source:Araport11)
AT1G21690.3	protein_coding	ATPase family associated with various cellular activities (AAA) 		ATPase family associated with various cellular activities (AAA);(source:Araport11)
AT1G21690.4	protein_coding	ATPase family associated with various cellular activities (AAA) 		ATPase family associated with various cellular activities (AAA);(source:Araport11)
AT1G22280.3	protein_coding	phytochrome-associated protein phosphatase type 2C	Encodes a phytochrome-associated protein, PAPP2C (phytochrome-associated protein phosphatase type 2C).  PAPP2C interacts in the nucleus with phyA (phytochrome A) and phyB.  Functions as a regulator of phytochrome-interacting factor PIF3 by dephosphorylating phytochromes in the nucleus.	phytochrome-associated protein phosphatase type 2C;(source:Araport11)
AT1G22290.2	protein_coding	14-3-3 family protein		14-3-3 family protein;(source:Araport11)
AT1G22403.2	other_rna			other_RNA;(source:Araport11)
AT1G22510.2	protein_coding	RING/U-box protein with domain of unknown function (DUF 1232)		E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232);(source:Araport11)
AT1G22690.2	protein_coding	Gibberellin-regulated family protein		Gibberellin-regulated family protein;(source:Araport11)
AT1G22690.3	protein_coding	Gibberellin-regulated family protein		Gibberellin-regulated family protein;(source:Araport11)
AT1G23020.2	protein_coding	ferric reduction oxidase 3	Encodes a ferric chelate reductase whose transcription is regulated by FIT1.  Expressed in the root, shoot, flower and cotyledon.	ferric reduction oxidase 3;(source:Araport11)
AT1G23052.1	other_rna			other_RNA;(source:Araport11)
AT1G23110.4	protein_coding			fold protein;(source:Araport11)
AT1G23110.5	protein_coding			fold protein;(source:Araport11)
AT1G23170.2	protein_coding	Protein of unknown function DUF2359, transmembrane		transmembrane protein (Protein of unknown function DUF2359, transmembrane);(source:Araport11)
AT1G23230.2	protein_coding		Mediator tail subunit, involved in transcriptional regulation.	mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT1G23520.2	protein_coding	Domain of unknown function (DUF220)		hypothetical protein (DUF220);(source:Araport11)
AT1G23690.3	protein_coding	Domain of unknown function DUF220		hypothetical protein (Domain of unknown function DUF220);(source:Araport11)
AT1G23860.4	protein_coding	RS-containing zinc finger protein 21	Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RS-containing zinc finger protein 21;(source:Araport11)
AT1G24020.2	protein_coding	MLP-like protein 423		MLP-like protein 423;(source:Araport11)
AT1G24095.1	protein_coding	Putative thiol-disulphide oxidoreductase DCC		Putative thiol-disulfide oxidoreductase DCC;(source:Araport11)
AT1G24148.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G24160.2	protein_coding			triadin;(source:Araport11)
AT1G24190.2	protein_coding	SIN3-like 3	Enhances AtERF7-mediated  transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19.	SIN3-like 3;(source:Araport11)
AT1G24260.3	protein_coding	K-box region and MADS-box transcription factor family protein 	Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G24265.3	protein_coding	Protein of unknown function (DUF1664)		bZIP transcription factor, putative (DUF1664);(source:Araport11)
AT1G24300.2	protein_coding	GYF domain-containing protein		GYF domain-containing protein;(source:Araport11)
AT1G24350.3	protein_coding	Acid phosphatase/vanadium-dependent haloperoxidase-related protein		Acid phosphatase/vanadium-dependent haloperoxidase-related protein;(source:Araport11)
AT1G24460.2	protein_coding		Encodes a novel protein that co-immunoprecipitates with SYP41.  It is involved in vacuolar trafficking and salt tolerance, potentially via a role in vesicle fusion and in maintaining TGN structure or identity. Mutants display delayed formation of the Brefeldin A (BFA) compartment in cotyledons upon application of BFA.	TGN-related, localized SYP41 interacting protein;(source:Araport11)
AT1G24706.2	protein_coding	THO2	Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. Mutations in THO have severe developmental defects and affect the production of several different classes of small RNAs indicating a broader role in small RNA biosynthesis.	THO2;(source:Araport11)
AT1G24735.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G24880.2	protein_coding	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein	Similar to bacterial lipid  A biosynthetic gene.	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein;(source:Araport11)
AT1G24880.3	protein_coding	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein	Similar to bacterial lipid  A biosynthetic gene.	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein;(source:Araport11)
AT1G25145.1	protein_coding	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein		UDP-3-O-acyl N-acetylglycosamine deacetylase family protein;(source:Araport11)
AT1G25150.1	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G25220.2	protein_coding	anthranilate synthase beta subunit 1	Catalyzes the first step of tryptophan biosynthesis: Chorismate L-Glutamine = Anthranilate Pyruvate L-Glutamate. Functions as a heterocomplex with anthranilate synthase alpha subunit (ASA1 or ASA2).	anthranilate synthase beta subunit 1;(source:Araport11)
AT1G25290.2	protein_coding	RHOMBOID-like protein 10		RHOMBOID-like protein 10;(source:Araport11)
AT1G25350.2	protein_coding	glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative		glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS;(source:Araport11)
AT1G25400.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G26130.2	protein_coding	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein		ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT1G26230.2	protein_coding	TCP-1/cpn60 chaperonin family protein	Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins.  Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).	TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT1G26320.2	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT1G26330.2	protein_coding	DNA binding		DNA binding protein;(source:Araport11)
AT1G26515.1	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G26660.2	protein_coding	Prefoldin chaperone subunit family protein		Prefoldin chaperone subunit family protein;(source:Araport11)
AT1G27045.1	protein_coding	Homeobox-leucine zipper protein family	Encodes ATHB54, a member of the homeodomain leucine zipper (HD-Zip) family protein. Please note that this locus was split from AT1G27050 in the TAIR10 genome release (2010). Affymetrix ATH1 Probe Set linked to symbol ATHB54 is in fact directed against the product of the AT1G27050 locus (the mRNA coding for the RNA-recognition-motif protein).	Homeobox-leucine zipper protein family;(source:Araport11)
AT1G27450.3	protein_coding	adenine phosphoribosyl transferase 1	Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP.	adenine phosphoribosyl transferase 1;(source:Araport11)
AT1G27921.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G27920;(source:Araport11)
AT1G28330.5	protein_coding	dormancy-associated protein-like 1	dormancy-associated protein (DRM1)	dormancy-associated protein-like 1;(source:Araport11)
AT1G28390.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G28395.5	protein_coding			hypothetical protein;(source:Araport11)
AT1G28710.3	protein_coding	Nucleotide-diphospho-sugar transferase family protein		Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G29025.1	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT1G29120.5	protein_coding	Hydrolase-like protein family		Hydrolase-like protein family;(source:Araport11)
AT1G29220.2	protein_coding	transcriptional regulator family protein		transcriptional regulator family protein;(source:Araport11)
AT1G30070.2	protein_coding	SGS domain-containing protein		SGS domain-containing protein;(source:Araport11)
AT1G30110.2	protein_coding	nudix hydrolase homolog 25	Encodes a ppGpp pyrophosphohydrolase.	nudix hydrolase homolog 25;(source:Araport11)
AT1G30470.2	protein_coding	SIT4 phosphatase-associated family protein		SIT4 phosphatase-associated family protein;(source:Araport11)
AT1G30470.3	protein_coding	SIT4 phosphatase-associated family protein		SIT4 phosphatase-associated family protein;(source:Araport11)
AT1G30610.2	protein_coding	pentatricopeptide (PPR) repeat-containing protein	Pentatricopeptide repeat protein .Mutations in this locus result in embryo lethality due to defects in chloroplast development. Embryo shape at seed maturity is globular.	pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G30810.2	protein_coding	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein	JMJ18 encodes a novel JmjC domain- containing histone H3K4 demethylase.	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11)
AT1G30840.2	protein_coding	purine permease 4	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 4;(source:Araport11)
AT1G31140.2	protein_coding	GORDITA	Encodes a B-sister MADS-box protein, GORDITA which is specific to the Brassicaceae. GOA is the most closely related paralog of ABS. GOA represses fruit growth and contributes to integument development.  Over-expression of GOA results in disorganized floral structure and addition of carpel-like  features to sepals.	GORDITA;(source:Araport11)
AT1G31170.4	protein_coding	sulfiredoxin	encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress	sulfiredoxin;(source:Araport11)
AT1G31420.2	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G31840.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G31910.2	protein_coding	GHMP kinase family protein		GHMP kinase family protein;(source:Araport11)
AT1G31930.3	protein_coding	extra-large GTP-binding protein 3	Encodes XLG3 (extra-large G protein 3) that shows significant similarity to the G protein alpha subunit in its C terminal region.  Involved in the regulation of root morphological and growth responses.	extra-large GTP-binding protein 3;(source:Araport11)
AT1G32130.2	protein_coding	Transcription elongation factor (TFIIS) family protein	The C-terminal portion of this protein has high homology to the C-termini of the IWS1 (Interacts With Spt6) proteins found in yeast and humans. Interacts with transcription factor BES1. Involved in brassinosteroid-regulated gene expression.	Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT1G32490.2	protein_coding	RNA helicase family protein	Encodes a homolog of the yeast PRP2 protein, one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing. Involved in ABI4-regulated ABA signaling under high glucose condition in early seedling growth.	RNA helicase family protein;(source:Araport11)
AT1G33050.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G33410.2	protein_coding	SUPPRESSOR OF AUXIN RESISTANCE1		SUPPRESSOR OF AUXIN RESISTANCE1;(source:Araport11)
AT1G33430.2	protein_coding	Galactosyltransferase family protein	UPEX1 is arabinogalactan b-(1,3)-galactosyltransferase involved in the formation of pollen exine. Belongs to GT31 family. Mutants have reduced levels of AGPs.	Galactosyltransferase family protein;(source:Araport11)
AT1G33612.1	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G33860.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G33950.2	protein_coding	Avirulence induced gene (AIG1) family protein		Avirulence induced gene (AIG1) family protein;(source:Araport11)
AT1G33970.5	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	IAN9 is a member of a small family of proteins. It's expression is repressed upon pathogen infection and loss of function mutants show increased resistance to bacterial pathogens.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G34047.2	protein_coding	Defensin-like (DEFL) family protein	Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G34350.2	protein_coding		Encodes a putative transmembrane protein that has been localized around the nucleus and is involved in pollen germination and pollen tube growth.	Tmem18;(source:Araport11)
AT1G34460.2	protein_coding	CYCLIN B1;5	B1 type cyclin	CYCLIN B1;(source:Araport11)
AT1G35160.2	protein_coding	GF14 protein phi chain	GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 The mRNA is cell-to-cell mobile.	GF14 protein phi chain;(source:Araport11)
AT1G35340.4	protein_coding	ATP-dependent protease La (LON) domain protein		ATP-dependent protease La (LON) domain protein;(source:Araport11)
AT1G35420.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G35530.2	protein_coding	DEAD/DEAH box RNA helicase family protein 	Encodes FANCM, a highly conserved helicase that functions as a major factor limiting meiotic crossover formation. It is not directly involved in the repair of DNA lesions but suppresses spontaneous somatic homologous recombination via a RecQ helicase (At-RECQ4A)-independent pathway.	DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT1G36070.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G36160.2	protein_coding	acetyl-CoA carboxylase 1	Encodes acetyl-CoA carboxylase. Mutant displays uncoordinated cell divisions which are enhanced by cytokinins. Mutant also has aberrant organization of the apical region in the embryo and abnormal root and shoot development and is deficient in freezing tolerance after cold acclimation. Essential for very long chain fatty acid elongation. The mRNA is cell-to-cell mobile.	acetyl-CoA carboxylase 1;(source:Araport11)
AT1G36280.2	protein_coding	L-Aspartase-like family protein		L-Aspartase-like family protein;(source:Araport11)
AT1G36922.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G36940.2	protein_coding			myotubularin-like protein;(source:Araport11)
AT1G42430.2	protein_coding		Novel plant specific, chloroplast localized protein that is  involved in regulation of starch degradation.	inactive purple acid phosphatase-like protein;(source:Araport11)
AT1G43170.5	protein_coding	ribosomal protein 1	Encodes a cytoplasmic ribosomal protein. The mRNA is cell-to-cell mobile.	ribosomal protein 1;(source:Araport11)
AT1G43170.6	protein_coding	ribosomal protein 1	Encodes a cytoplasmic ribosomal protein. The mRNA is cell-to-cell mobile.	ribosomal protein 1;(source:Araport11)
AT1G43170.7	protein_coding	ribosomal protein 1	Encodes a cytoplasmic ribosomal protein. The mRNA is cell-to-cell mobile.	ribosomal protein 1;(source:Araport11)
AT1G43170.8	protein_coding	ribosomal protein 1	Encodes a cytoplasmic ribosomal protein. The mRNA is cell-to-cell mobile.	ribosomal protein 1;(source:Araport11)
AT1G43170.9	protein_coding	ribosomal protein 1	Encodes a cytoplasmic ribosomal protein. The mRNA is cell-to-cell mobile.	ribosomal protein 1;(source:Araport11)
AT1G43650.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G44125.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G44120;(source:Araport11)
AT1G44900.2	protein_coding	minichromosome maintenance (MCM2/3/5) family protein	Encodes MCM2 (MINICHROMOSOME MAINTENANCE 2), a protein essential to embryo development. Overexpression results in altered root meristem function.	minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT1G45015.2	protein_coding	MD-2-related lipid recognition domain-containing protein		MD-2-related lipid recognition domain-containing protein;(source:Araport11)
AT1G45163.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G45249.3	protein_coding	abscisic acid responsive elements-binding factor 2	Leucine zipper transcription factor that binds to the abscisic acid (ABA)–responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus.  Expressed constitutively in roots,  leaf vascular tissues, and hydathodes or  in all tissues under stress conditions. It's phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment.	abscisic acid responsive elements-binding factor 2;(source:Araport11)
AT1G46912.2	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT1G47270.2	protein_coding	tubby like protein 6	Member of TLP family of tubby like proteins that also contain an F-Box. Localized to the plasma membrane.	tubby like protein 6;(source:Araport11)
AT1G47410.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G47497.2	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G47510.2	protein_coding	inositol polyphosphate 5-phosphatase 11	Encodes a phosphatidylinositol  polyphosphate 5-phosphatase. It can dephosphorylate PI(4,5)P2, PI(3,5)P2, and PI(3,4,5)P3, but, it is not active against PI(5)P or the water soluble inositol(1,4,5)P3 or inositol(1,3,4,5)P4. The transcript levels for this gene rise in response to auxin, ABA, and JA.	inositol polyphosphate 5-phosphatase 11;(source:Araport11)
AT1G47550.2	protein_coding	exocyst complex component sec3A	Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.  It binds phosphoinositide lipids.	exocyst complex component sec3A;(source:Araport11)
AT1G47578.1	protein_coding	Biotin/lipoate A/B protein ligase family		Biotin/lipoate A/B protein ligase family;(source:Araport11)
AT1G47600.2	protein_coding	beta glucosidase 34	Encodes a myrosinase. Over-expression led to a glucosinolate profile change.	beta glucosidase 34;(source:Araport11)
AT1G47870.2	protein_coding	winged-helix DNA-binding transcription factor family protein	Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway.  AtE2Fc is regulated by a balance between gene expression and ubiquitin-proteasome proteolysis.  AtE2Fc might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. E2Fc has been shown to interact with DPB in its nonphosphorylated form; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost. E2Fc is required for miR396 activity on cell proliferation under UV-B.  Its role is independent of E2Fe, probably modulating DNA damage responses through the regulation of SOG1 and ATR transcript levels.	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT1G47900.2	protein_coding	Plant protein of unknown function (DUF869)		filament-like protein (DUF869);(source:Araport11)
AT1G48140.2	protein_coding	dolichol-phosphate mannosyltransferase-related	Encodes a subunit of the dolichol phosphate mannase synthase (DPMS) complex that may serve as membrane anchors for the catalytic core, DPMS1, or provide catalytic assistance. It is localized in the ER and mediates isoprenyl-linked glycan biogenesis.	dolichol-phosphate mannosyltransferase-like protein;(source:Araport11)
AT1G48410.3	protein_coding	Stabilizer of iron transporter SufD / Polynucleotidyl transferase	Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs.  There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC).  Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the  regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus.	Stabilizer of iron transporter SufD / Polynucleotidyl transferase;(source:Araport11)
AT1G48450.3	protein_coding	Protein of unknown function (DUF760)		alanine-tRNA ligase, putative (DUF760);(source:Araport11)
AT1G48510.2	protein_coding	Surfeit locus 1 cytochrome c oxidase biogenesis protein		Surfeit locus 1 cytochrome c oxidase biogenesis protein;(source:Araport11)
AT1G48550.2	protein_coding	Vacuolar protein sorting-associated protein 26	VPS26C is a component of a retromer complex, it is involved in endosome to lysosome protein transport and root hair growth.	Vacuolar protein sorting-associated protein 26;(source:Araport11)
AT1G48560.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G48590.2	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G48590.3	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G48740.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G49040.3	protein_coding	stomatal cytokinesis defective / SCD1 protein (SCD1)	Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells.  The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile.	stomatal cytokinesis defective / SCD1 protein (SCD1);(source:Araport11)
AT1G49180.2	protein_coding	protein kinase family protein		protein kinase family protein;(source:Araport11)
AT1G49190.2	protein_coding	response regulator 19	member of Response Regulator: B- Type	response regulator 19;(source:Araport11)
AT1G49540.2	protein_coding	elongator protein 2		elongator protein 2;(source:Araport11)
AT1G49590.3	protein_coding	C2H2 and C2HC zinc fingers superfamily protein	Encodes a novel nucleic acid-binding protein that is required for both RdDM (RNA-directed DNA methylation) and pre-mRNA splicing.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G49670.2	protein_coding	ARP protein (REF)	molecular function has not been defined. Was shown involved in oxidative stress tolerance.	ARP protein (REF);(source:Araport11)
AT1G49720.2	protein_coding	abscisic acid responsive element-binding factor 1	Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses.	abscisic acid responsive element-binding factor 1;(source:Araport11)
AT1G49760.2	protein_coding	poly(A) binding protein 8	polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.	poly(A) binding protein 8;(source:Araport11)
AT1G49832.1	other_rna			None;(source:Araport11)
AT1G49940.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G50200.2	protein_coding	Alanyl-tRNA synthetase		Alanyl-tRNA synthetase;(source:Araport11)
AT1G50260.2	protein_coding	N-terminal-transmembrane-C2 domain type 5.1		N-terminal-transmembrane-C2 domain type 5.1;(source:Araport11)
AT1G50500.2	protein_coding	Membrane trafficking VPS53 family protein	encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress.	Membrane trafficking VPS53 family protein;(source:Araport11)
AT1G50659.1	other_rna			other_RNA;(source:Araport11)
AT1G50732.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G51020.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G51035.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G51070.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	bHLH115 is a basic helix loop helix protein of the IVc subgroup that plays a role in iron homeostasis. It interacts with related family members and targets PYE and other genes involved in response to Fe.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G51200.3	protein_coding	A20/AN1-like zinc finger family protein		A20/AN1-like zinc finger family protein;(source:Araport11)
AT1G51200.4	protein_coding	A20/AN1-like zinc finger family protein		A20/AN1-like zinc finger family protein;(source:Araport11)
AT1G51270.4	protein_coding	structural molecules;transmembrane receptors;structural molecules		vesicle-associated protein 1-4;(source:Araport11)
AT1G51370.3	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G51530.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G51620.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G51690.3	protein_coding	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	55 kDa B regulatory subunit of phosphatase 2A  mRNA,	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;(source:Araport11)
AT1G51805.2	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G51890.2	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G52100.2	protein_coding	Mannose-binding lectin superfamily protein		Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G52360.2	protein_coding	Coatomer, beta' subunit		Coatomer, beta subunit;(source:Araport11)
AT1G52400.3	protein_coding	beta glucosidase 18	encodes a member of glycosyl hydrolase family 1, located in inducible ER bodies which were formed after wounding, required in inducible ER body formation The mRNA is cell-to-cell mobile.	beta glucosidase 18;(source:Araport11)
AT1G52615.2	other_rna			other_RNA;(source:Araport11)
AT1G52710.2	protein_coding	Rubredoxin-like superfamily protein		Rubredoxin-like superfamily protein;(source:Araport11)
AT1G53023.1	protein_coding	Ubiquitin-conjugating enzyme family protein		Ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT1G53025.1	protein_coding	Ubiquitin-conjugating enzyme family protein		Ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT1G53100.2	protein_coding	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G53165.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G53480.2	protein_coding	mto 1 responding down 1	Encodes MRD1 (mto 1 responding down).  Down-regulated in mto1-1 mutant that over-accumulates soluble methionine.	mto 1 responding down 1;(source:Araport11)
AT1G53570.4	protein_coding	mitogen-activated protein kinase kinase kinase 3	Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK3 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens.	mitogen-activated protein kinase kinase kinase 3;(source:Araport11)
AT1G53570.5	protein_coding	mitogen-activated protein kinase kinase kinase 3	Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK3 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens.	mitogen-activated protein kinase kinase kinase 3;(source:Araport11)
AT1G53705.2	protein_coding	aminoacyl-tRNA ligases;nucleotide binding;ATP binding		putative aminoacyl-tRNA ligase;(source:Araport11)
AT1G53760.2	protein_coding			K+-H+ exchange-like protein;(source:Araport11)
AT1G53770.2	protein_coding	O-fucosyltransferase family protein		O-fucosyltransferase family protein;(source:Araport11)
AT1G53780.2	protein_coding	peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases		26S proteasome regulatory complex ATPase;(source:Araport11)
AT1G53780.3	protein_coding	peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases		26S proteasome regulatory complex ATPase;(source:Araport11)
AT1G53890.3	protein_coding	Protein of unknown function (DUF567)		LURP-one-like protein (DUF567);(source:Araport11)
AT1G54210.2	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT1G54270.2	protein_coding	eif4a-2	member of eIF4A - eukaryotic initiation factor 4A	eif4a-2;(source:Araport11)
AT1G54360.5	protein_coding	TBP-ASSOCIATED FACTOR 6B	Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.	TBP-ASSOCIATED FACTOR 6B;(source:Araport11)
AT1G54440.2	protein_coding	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	Rrp6-like protein, controls RNA-directed DNA methylation by helping with the retention of noncoding RNAs in normal cells.	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein;(source:Araport11)
AT1G54510.2	protein_coding	NIMA-related serine/threonine kinase 1	Encodes AtNEK1, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related serine/threonine kinase 1;(source:Araport11)
AT1G54510.3	protein_coding	NIMA-related serine/threonine kinase 1	Encodes AtNEK1, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related serine/threonine kinase 1;(source:Araport11)
AT1G54650.2	protein_coding	Methyltransferase family protein		Methyltransferase family protein;(source:Araport11)
AT1G54680.3	protein_coding			translation initiation factor 3 subunit I;(source:Araport11)
AT1G54790.3	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G54920.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G55120.3	protein_coding	beta-fructofuranosidase 5	Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.	beta-fructofuranosidase 5;(source:Araport11)
AT1G55207.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G55210.2	protein_coding	Disease resistance-responsive (dirigent-like protein) family protein		Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT1G55250.3	protein_coding	histone mono-ubiquitination 2	Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.	histone mono-ubiquitination 2;(source:Araport11)
AT1G55250.4	protein_coding	histone mono-ubiquitination 2	Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.	histone mono-ubiquitination 2;(source:Araport11)
AT1G55260.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G55310.3	protein_coding	SC35-like splicing factor 33	Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SC35-like splicing factor 33;(source:Araport11)
AT1G55325.2	protein_coding	RNA polymerase II transcription mediators	Encodes the Arabidopsis homolog of the transcriptional regulator MED13, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation.	RNA polymerase II transcription mediator;(source:Araport11)
AT1G55350.5	protein_coding	calpain-type cysteine protease family	Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway. It localizes to membranes and undergoes intramolecular autolytic cleavage events that release the calpain domain into  the cytoplasm.	calpain-type cysteine protease family;(source:Araport11)
AT1G55450.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G55500.2	protein_coding	evolutionarily conserved C-terminal region 4		evolutionarily conserved C-terminal region 4;(source:Araport11)
AT1G55500.3	protein_coding	evolutionarily conserved C-terminal region 4		evolutionarily conserved C-terminal region 4;(source:Araport11)
AT1G55660.2	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein	FOF2, is the F-box protein family. Overexpression of FOF2 results in delayed transitions to flowering under both LD and SD conditions.	FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G55830.2	protein_coding			coiled-coil protein;(source:Araport11)
AT1G55900.2	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	component of a translocase in the mitochondrial inner membrane	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G56145.2	protein_coding	Leucine-rich repeat transmembrane protein kinase		Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G56230.2	protein_coding	Protein of unknown function (DUF1399)		enolase (DUF1399);(source:Araport11)
AT1G56400.2	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT1G56440.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G56460.2	protein_coding	HIT zinc finger ;PAPA-1-like conserved region		HIT zinc finger and PAPA-1-like domain-containing protein;(source:Araport11)
AT1G56520.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G56610.3	protein_coding	Protein with RNI-like/FBD-like domains		Protein with RNI-like/FBD-like domain;(source:Araport11)
AT1G57650.2	protein_coding	ATP binding		ATP binding protein;(source:Araport11)
AT1G57765.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G57870.3	protein_coding	shaggy-like kinase 42		shaggy-like kinase 42;(source:Araport11)
AT1G58025.2	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT1G58025.3	protein_coding	DNA-binding bromodomain-containing protein		DNA-binding bromodomain-containing protein;(source:Araport11)
AT1G58180.4	protein_coding	beta carbonic anhydrase 6		beta carbonic anhydrase 6;(source:Araport11)
AT1G58190.2	protein_coding	receptor like protein 9		receptor like protein 9;(source:Araport11)
AT1G58225.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G58250.2	protein_coding	Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain	SABRE, putative gene of unknown function, homologous to maize apt1 gene. Required for normal cell expansion in the root cortex. The sabre mutation results in abnormal cell expansion. Encodes a rare message; very low level of expression was detected in roots and shoots.	HYPERSENSITIVE TO PI STARVATION 4;(source:Araport11)
AT1G58280.4	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT1G58350.3	protein_coding	Putative serine esterase  family protein		Putative serine esterase family protein;(source:Araport11)
AT1G59218.2	protein_coding	Disease resistance protein (CC-NBS-LRR class) family	Similar to disease resistance proteins.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G59750.4	protein_coding	auxin response factor 1	Encodes a member of the auxin response factor family. ARFs bind to the cis element 5'-TGTCTC-3' ARFs mediate changes in gene expression in response to auxin. ARF's form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence.ARF1:LUC and 3xHA:ARF1 proteins have a half-life of ~3-4 hours and their degradation is reduced by proteasome inhibitors. 3xHA:ARF1 degradation is not affected by a pre-treatment with IAA. A nuclear-targeted fusion protein containing the middle region of ARF1 linked to LUC:NLS has a similar half-life to the full-length ARF1:LUC construct. The degradation of 3xHA:ARF1 is not affected in an axr6-3 mutant grown at room temperature, although the degradation of AXR2/IAA7 is slowed under these conditions.	auxin response factor 1;(source:Araport11)
AT1G59890.2	protein_coding	SIN3-like 5		SIN3-like 5;(source:Araport11)
AT1G59890.3	protein_coding	SIN3-like 5		SIN3-like 5;(source:Araport11)
AT1G59890.4	protein_coding	SIN3-like 5		SIN3-like 5;(source:Araport11)
AT1G60070.2	protein_coding	Adaptor protein complex AP-1, gamma subunit		Adaptor protein complex AP-1, gamma subunit;(source:Araport11)
AT1G60640.3	protein_coding			stress response protein;(source:Araport11)
AT1G60640.4	protein_coding			stress response protein;(source:Araport11)
AT1G60640.5	protein_coding			stress response protein;(source:Araport11)
AT1G60730.3	protein_coding	NAD(P)-linked oxidoreductase superfamily protein		NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G60890.2	protein_coding	Phosphatidylinositol-4-phosphate 5-kinase family protein		Phosphatidylinositol-4-phosphate 5-kinase family protein;(source:Araport11)
AT1G61100.2	protein_coding	disease resistance protein (TIR class), putative		disease resistance protein (TIR class);(source:Araport11)
AT1G61210.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	DWA3 encodes a DWD(DDB1 binding WD40) protein. Invitro analyses suggest its involvement in the negative regulation  of ABA responses.One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G61250.2	protein_coding	secretory carrier 3	Encodes a putative secretory carrier membrane protein (SC3). The mRNA is cell-to-cell mobile.	secretory carrier 3;(source:Araport11)
AT1G61340.2	protein_coding	F-box family protein	Encodes a F-box protein induced by various biotic or abiotic stress.	F-box family protein;(source:Araport11)
AT1G61520.3	protein_coding	photosystem I light harvesting complex gene 3	PSI type III chlorophyll a/b-binding protein (Lhca3*1) The mRNA is cell-to-cell mobile.	PSI type III chlorophyll a/b-binding protein;(source:Araport11)
AT1G61560.2	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT1G61560.3	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT1G61560.4	protein_coding	Seven transmembrane MLO family protein	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT1G61660.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a transcriptional activator that regulates the expression of genes by binding to their GCG- or E-boxes to mediate physiological responses, including proline biosynthesis and ROS scavenging pathways, to enhance stress tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G61660.4	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a transcriptional activator that regulates the expression of genes by binding to their GCG- or E-boxes to mediate physiological responses, including proline biosynthesis and ROS scavenging pathways, to enhance stress tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G61680.2	protein_coding	terpene synthase 14		terpene synthase 14;(source:Araport11)
AT1G61810.3	protein_coding	beta-glucosidase 45		beta-glucosidase 45;(source:Araport11)
AT1G61850.2	protein_coding	phospholipases;galactolipases	Encodes a non-specific lipase that hydrolyzes phospholipids as well as galactolipids, at both sn-1 and sn-2 positions. Involved in basal jasmonic acid biosynthesis by releasing the precursor fatty acid from membrane lipids. Mutant plants were impacted in resistance to fungus B. cinerea.	phospholipase A I-like protein;(source:Araport11)
AT1G61900.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G61970.2	protein_coding	Mitochondrial transcription termination factor family protein		Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G62040.2	protein_coding	Ubiquitin-like superfamily protein	Autophagy protein.	Ubiquitin-like superfamily protein;(source:Araport11)
AT1G62170.2	protein_coding	Serine protease inhibitor (SERPIN) family protein		Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT1G62180.2	protein_coding	5'adenylylphosphosulfate reductase 2	encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.	5adenylylphosphosulfate reductase 2;(source:Araport11)
AT1G62610.4	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G62914.1	protein_coding	pentatricopeptide (PPR) repeat-containing protein		pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G62981.2	protein_coding	Protein of unknown function (DUF1191)		transmembrane protein, putative (DUF1191);(source:Araport11)
AT1G63010.5	protein_coding	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein	Encodes an SPX domain protein that transports Pi into the vacuole and is essential for phosphate homeostasis.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT1G63020.2	protein_coding	nuclear RNA polymerase D1A	Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D).  Required for posttranscriptional gene silencing.	nuclear RNA polymerase D1A;(source:Araport11)
AT1G63295.1	protein_coding	Remorin family protein		Remorin family protein;(source:Araport11)
AT1G63380.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G63430.2	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G63650.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Mutants are defective in jasmonate-induced anthocyanin accumulation. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G63770.5	protein_coding	Peptidase M1 family protein		Peptidase M1 family protein;(source:Araport11)
AT1G63830.3	protein_coding	PLAC8 family protein		PLAC8 family protein;(source:Araport11)
AT1G63900.2	protein_coding	E3 Ubiquitin ligase family protein	Encodes a RING-type ubiquitin E3 ligase of the chloroplast outer membrane that associates with TOC complexes and mediates ubiquitination of TOC components, promoting their degradation.  It not only regulates chloroplast protein import but also targets components of the peroxisome protein import apparatus, PEX13 in particular. Several studies have been done to examine the peroxisomal localization of this protein, with varying interpretations.	E3 Ubiquitin ligase family protein;(source:Araport11)
AT1G64050.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G64090.2	protein_coding	Reticulan like protein B3		Reticulan like protein B3;(source:Araport11)
AT1G64230.5	protein_coding	ubiquitin-conjugating enzyme 28		ubiquitin-conjugating enzyme 28;(source:Araport11)
AT1G64583.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G64625.3	protein_coding	Serine/threonine-protein kinase WNK (With No Lysine)-related	Encodes a plant-specific basic helix-loop-helix (bHLH) protein that is required for normal meiotic entry and the establishment of meiotic synchrony.  It plays a role in xylem differentiation downstream of auxin.	Serine/threonine-protein kinase WNK (With No Lysine)-like protein;(source:Araport11)
AT1G64750.3	protein_coding	deletion of SUV3 suppressor 1(I)		deletion of SUV3 suppressor 1(I);(source:Araport11)
AT1G64770.3	protein_coding	NDH-dependent cyclic electron flow 1	encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.	NDH-dependent cyclic electron flow 1;(source:Araport11)
AT1G64790.2	protein_coding	ILITYHIA	ILITHYIA (ILA) is a HEAT repeat protein involved in plant immunity. The gene is also involved in systemic acquired resistance induced by P. syringae expressing avrRps4. Loss-of-function mutants of ILA caused pleiotropic defects in the mutant plants. The mutant plants are smaller in size and the leaves are serrated and yellow to light green in color. Required for bacterium-triggered stomatal closure.	ILITYHIA;(source:Araport11)
AT1G64860.2	protein_coding	sigma factor A	Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme	sigma factor A;(source:Araport11)
AT1G65070.2	protein_coding	DNA mismatch repair protein MutS, type 2		DNA mismatch repair protein MutS, type 2;(source:Araport11)
AT1G65090.3	protein_coding			nucleolin;(source:Araport11)
AT1G65440.3	protein_coding	global transcription factor group B1	Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. It encodes a putative WG/GW-repeat protein involved in the regulation of apical-basal polarity of embryo	global transcription factor group B1;(source:Araport11)
AT1G65450.2	protein_coding	HXXXD-type acyl-transferase family protein	Contains dual transcription units and alternative splicing that could rescue the sterility defect of glc mutants. Shares homology to BAHD (for BEAT, AHCT, HCBT, and DAT) acyl-transferases. Functions in double fertilization.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G65450.3	protein_coding	HXXXD-type acyl-transferase family protein	Contains dual transcription units and alternative splicing that could rescue the sterility defect of glc mutants. Shares homology to BAHD (for BEAT, AHCT, HCBT, and DAT) acyl-transferases. Functions in double fertilization.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G65470.2	protein_coding	chromatin assembly factor-1 (FASCIATA1) (FAS1)	Chromatin Assembly Factor-1 (CAF-1) p150 subunit. Mutants have reduced heterochromatin content.  In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively.  Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.	chromatin assembly factor-1 (FASCIATA1) (FAS1);(source:Araport11)
AT1G65484.2	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT1G65700.3	protein_coding	Small nuclear ribonucleoprotein family protein		Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT1G65810.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G65850.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G66070.2	protein_coding	Translation initiation factor eIF3 subunit		Translation initiation factor eIF3 subunit;(source:Araport11)
AT1G66200.3	protein_coding	glutamine synthase clone F11	encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium	hypothetical protein;(source:Araport11)
AT1G66240.3	protein_coding	homolog of anti-oxidant 1		homolog of anti-oxidant 1;(source:Araport11)
AT1G66260.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G66410.2	protein_coding	calmodulin 4	encodes a calmodulin	calmodulin 4;(source:Araport11)
AT1G66610.2	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT1G66920.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G66970.2	protein_coding	SHV3-like 2	Encodes a member of the glycerophosphodiester phosphodiesterase like (GDPD-like) family.	SHV3-like 2;(source:Araport11)
AT1G67025.2	protein_coding			wall-associated receptor kinase carboxy-terminal protein;(source:Araport11)
AT1G67035.2	protein_coding			homeobox Hox-B3-like protein;(source:Araport11)
AT1G67140.2	protein_coding	HEAT repeat-containing protein		HEAT repeat-containing protein;(source:Araport11)
AT1G67140.3	protein_coding	HEAT repeat-containing protein		HEAT repeat-containing protein;(source:Araport11)
AT1G67190.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT1G67320.2	protein_coding	DNA primase, large subunit family		DNA primase, large subunit family;(source:Araport11)
AT1G67320.3	protein_coding	DNA primase, large subunit family		DNA primase, large subunit family;(source:Araport11)
AT1G67325.2	protein_coding	Ran BP2/NZF zinc finger-like superfamily protein		Ran BP2/NZF zinc finger-like superfamily protein;(source:Araport11)
AT1G67420.2	protein_coding	Zn-dependent exopeptidases superfamily protein		Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT1G67430.2	protein_coding	Ribosomal protein L22p/L17e family protein		Ribosomal protein L22p/L17e family protein;(source:Araport11)
AT1G67500.2	protein_coding	recovery protein 3	Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).	recovery protein 3;(source:Araport11)
AT1G67660.3	protein_coding	Restriction endonuclease, type II-like superfamily protein		Restriction endonuclease, type II-like superfamily protein;(source:Araport11)
AT1G67700.3	protein_coding			multidrug resistance protein;(source:Araport11)
AT1G67900.3	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G67910.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G68010.2	protein_coding	hydroxypyruvate reductase	Encodes hydroxypyruvate reductase.	hydroxypyruvate reductase;(source:Araport11)
AT1G68140.3	protein_coding	Protein of unknown function (DUF1644)		zinc finger/BTB domain protein, putative (DUF1644);(source:Araport11)
AT1G68540.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G68840.2	protein_coding	related to ABI3/VP1 2	Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE) The mRNA is cell-to-cell mobile.	related to ABI3/VP1 2;(source:Araport11)
AT1G68910.3	protein_coding	WPP domain-interacting protein 2	Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390, WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells.  Ran GTPase plays essential roles in multiple cellular processes, including nucleocytoplasmic transport, spindle formation, and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs).  WIT1 and WIT2 have been identified as a second family of CC-TMD proteins, structurally similar, yet clearly distinct from the WIP family, that is required for RanGAP nuclear envelop association in root tip cells.	WPP domain-interacting protein 2;(source:Araport11)
AT1G68960.2	protein_coding	Protein of unknown function (DUF295)		hypothetical protein (DUF295);(source:Araport11)
AT1G68990.2	protein_coding	male gametophyte defective 3	MGP3 (male gametophyte-defective 3) belongs to a small family of nuclear-encoded Phage type RNA polymerases (RPOTs) involved in the transcription of mitochondrial genes in Arabidopsis thaliana. Mutation in MGP 3 significantly retarded pollen tube growth and caused defective embryo development.	male gametophyte defective 3;(source:Araport11)
AT1G69252.2	other_rna			other_RNA;(source:Araport11)
AT1G69450.2	protein_coding	Early-responsive to dehydration stress protein (ERD4)		Early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT1G69530.5	protein_coding	expansin A1	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin A1;(source:Araport11)
AT1G69587.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G69588;(source:Araport11)
AT1G69840.7	protein_coding	SPFH/Band 7/PHB domain-containing membrane-associated protein family		SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
AT1G70000.2	protein_coding	myb-like transcription factor family protein	Encodes a MYB-like Domain transcription factor that plays a positive role in anthocyanin accumulation in response to light and cytokinin via repression of MYBL2.MYBD expression increased in response to light or cytokinin, and MYBD enhanced anthocyanin biosynthesis via the repression of MYBL2 encoding for a transcription factor that had a negative effect on this process. In addition, MYBD can bind in vivo to the MYBL2 promoter and a lower level of histone H3K9 acetylation (H3K9ac) at upstream region of MYBL2 in MYBD-OX in comparison to wild-type plants, implies that MYBD represses MYBL2 expression via an epigenetic mechanism.	myb-like transcription factor family protein;(source:Araport11)
AT1G70190.2	protein_coding	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like		ribosomal protein L7/L12 domain-containing protein;(source:Araport11)
AT1G70370.2	protein_coding	polygalacturonase 2		polygalacturonase 2;(source:Araport11)
AT1G70570.2	protein_coding	anthranilate phosphoribosyltransferase, putative		anthranilate phosphoribosyltransferase;(source:Araport11)
AT1G70620.3	protein_coding	cyclin-related		cyclin-like protein;(source:Araport11)
AT1G70650.2	protein_coding	Ran BP2/NZF zinc finger-like superfamily protein		Ran BP2/NZF zinc finger-like superfamily protein;(source:Araport11)
AT1G70660.2	protein_coding	MMS ZWEI homologue 2	MMZ2/UEV1B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ2/UEV1B and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ2/UEV1B transcripts are found in most plant organs, but not in the pollen or in seedlings 6 hours or 2 days post-germination. The transcript levels do not appear to be stress-inducible. The mRNA is cell-to-cell mobile.	MMS ZWEI homologue 2;(source:Araport11)
AT1G70740.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G70770.2	protein_coding	Protein of unknown function DUF2359, transmembrane		transmembrane protein (Protein of unknown function DUF2359, transmembrane);(source:Araport11)
AT1G70860.2	protein_coding	Polyketide cyclase/dehydrase and lipid transport superfamily protein		Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G71190.2	protein_coding	senescence associated gene 18	Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function.  Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.	senescence associated gene 18;(source:Araport11)
AT1G71220.2	protein_coding	UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups	Encodes UDP-glucose:glycoprotein glucosyltransferase. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the  presence of elf18, and EFR accumulation and signalling.	EMS-MUTAGENIZED BRI1 SUPPRESSOR 1;(source:Araport11)
AT1G71710.2	protein_coding	DNAse I-like superfamily protein		DNAse I-like superfamily protein;(source:Araport11)
AT1G71750.2	protein_coding	Hypoxanthine-guanine phosphoribosyltransferase	Encodes a protein with  hypoxanthine-guanine-phosphoribosyltransferase activity. Unlike some related enzymes, it does not appear to act on xanthine in vitro. The enzyme catalyzes reactions occurring in both directions, but appears to prefer acting on guanine, followed by hypoxanthine, in vitro. The enzyme is likely to function in purine salvage pathways and appears to be important for seed germination.	Hypoxanthine-guanine phosphoribosyltransferase;(source:Araport11)
AT1G71770.2	protein_coding	poly(A)-binding protein 5	Encodes a Class I polyA-binding protein. Expressed in floral organs. Binds polyA sepharose in vitro.	poly(A)-binding protein 5;(source:Araport11)
AT1G71820.2	protein_coding	SEC6	Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.	SEC6;(source:Araport11)
AT1G71866.1	protein_coding			EPIDERMAL PATTERNING FACTOR-like protein;(source:Araport11)
AT1G71940.2	protein_coding	SNARE associated Golgi protein family		SNARE associated Golgi protein family;(source:Araport11)
AT1G72110.2	protein_coding	O-acyltransferase (WSD1-like) family protein		O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT1G72250.2	protein_coding	Di-glucose binding protein with Kinesin motor domain		Di-glucose binding protein with Kinesin motor domain-containing protein;(source:Araport11)
AT1G72330.3	protein_coding	alanine aminotransferase 2	Encodes for alanine aminotransferase ALAAT2.	alanine aminotransferase 2;(source:Araport11)
AT1G72410.2	protein_coding	COP1-interacting protein-related		COP1-interacting protein-like protein;(source:Araport11)
AT1G72416.5	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G72560.3	protein_coding	ARM repeat superfamily protein	Encodes a karyopherin, specifically the Arabidopsis ortholog of LOS1/XPOT, a protein that mediates nuclear export of tRNAs in yeast and mammals.  PSD is capable of rescuing the tRNA export defect of los1 in S. cerevisiae. psd mutants display disrupted initiation of the shoot apical meristem and delay leaf initiation after germination; they also display delayed transition from vegetative to reproductive development.	ARM repeat superfamily protein;(source:Araport11)
AT1G72600.2	protein_coding	hydroxyproline-rich glycoprotein family protein		hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G72770.3	protein_coding	HYPERSENSITIVE TO ABA1	mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C; regulates the activation of the Snf1-related kinase OST1 by abscisic acid. The mRNA is cell-to-cell mobile.	HYPERSENSITIVE TO ABA1;(source:Araport11)
AT1G72840.2	protein_coding	Disease resistance protein (TIR-NBS-LRR class)		Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G72852.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G72850;(source:Araport11)
AT1G72890.2	protein_coding	Disease resistance protein (TIR-NBS class)		Disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G73020.2	protein_coding			anoctamin-like protein;(source:Araport11)
AT1G73090.2	protein_coding			WD repeat protein;(source:Araport11)
AT1G73370.2	protein_coding	sucrose synthase 6	Encodes a protein with sucrose synthase activity (SUS6).	sucrose synthase 6;(source:Araport11)
AT1G73470.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G73490.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G73680.2	protein_coding	alpha dioxygenase	Encodes an alpha dioxygenase.  Recombinant protein catalyzes the conversion of a wide range of fatty acids into 2(R)-hydroperoxy derivatives.	alpha dioxygenase;(source:Araport11)
AT1G73830.2	protein_coding	BR enhanced expression 3	Encodes the brassinosteroid signaling component BEE3 (BR-ENHANCED EXPRESSION 3). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	BR enhanced expression 3;(source:Araport11)
AT1G74088.2	protein_coding			galacturonosyltransferase;(source:Araport11)
AT1G74205.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74210;(source:Araport11)
AT1G74390.2	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein		Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G74840.2	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT1G74920.2	protein_coding	aldehyde dehydrogenase 10A8	ALDH10A8 encodes a protein that has not been functionally characterized, but it is similar to an Arabidopsis protein that has betaine aldehyde dehydrogenase and aminoaldehyde dehydrogenase activity. ALDH10A8 localizes to leucoplasts. aldh10a8 mutant plants are more susceptible to NaCl and dehydration stress.	aldehyde dehydrogenase 10A8;(source:Araport11)
AT1G74960.3	protein_coding	fatty acid biosynthesis 1	Encodes a plastidic beta-ketoacyl-ACP synthase II, involved in fatty acid elongation from 16:0-ACP to 18:0-ACP. Homozygous knock-out mutants are embryo lethal, indicating early embryo development is sensitive to elevated 16:0.	fatty acid biosynthesis 1;(source:Araport11)
AT1G75340.2	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G75450.2	protein_coding	cytokinin oxidase 5	This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase 5;(source:Araport11)
AT1G75500.2	protein_coding	Walls Are Thin 1	An Arabidopsis thaliana homolog of Medicago truncatula NODULIN21 (MtN21). The gene encodes a plant-specific, predicted integral membrane protein and is a member of the Plant-Drug/Metabolite Exporter (P-DME) family (Transporter Classification number: TC 2.A.7.3) and the nodulin MtN21-like transporter family.	Walls Are Thin 1;(source:Araport11)
AT1G75630.2	protein_coding	vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4	vacuolar H+-pumping ATPase 16 kD proteolipid (ava-p) mRNA, The mRNA is cell-to-cell mobile.	vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4;(source:Araport11)
AT1G75720.2	protein_coding	Plant protein of unknown function (DUF827)		WEB family protein (DUF827);(source:Araport11)
AT1G75730.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G75750.2	protein_coding	GAST1 protein homolog 1	GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically.  Possibly involved in cell elongation based on expression data The mRNA is cell-to-cell mobile.	GAST1 protein homolog 1;(source:Araport11)
AT1G76180.2	protein_coding	Dehydrin family protein	Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress.  Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3.  ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated.	Dehydrin family protein;(source:Araport11)
AT1G76280.3	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G76480.2	protein_coding			caveolin-1 protein;(source:Araport11)
AT1G76510.3	protein_coding	ARID/BRIGHT DNA-binding domain-containing protein		ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT1G76630.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	SKI3 encodes a cytplasmically localized component of the SKI complex which is involved in exosome mediated RNA decay.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G76650.3	protein_coding	calmodulin-like 38		calmodulin-like 38;(source:Araport11)
AT1G76940.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G77000.2	protein_coding	RNI-like superfamily protein	AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1.  Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain.  Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis.  AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. AtSKP2b may also be involved in the degradation of KRP1/ICK1, a CDK inhibitor.	RNI-like superfamily protein;(source:Araport11)
AT1G77180.3	protein_coding	chromatin protein family	Encodes a putative transcriptional factor.  Shows transcriptional activator activity in yeast.  Involved in response to abscisic acid, salt and osmotic stress. SKIP lengthens period of the circadian clock by impairing the alternative splicing of PRR7 and PRR9. SKIP regulates the splicing of SEF pre-mRNA  and suppresses flowering by activation of FLC.	chromatin protein family;(source:Araport11)
AT1G77210.2	protein_coding	sugar transporter 14	AtSTP14 belongs to the family of sugar transport proteins (AtSTPs)in volved in monosaccharide transport. Heterologous expression in yeast revealed that AtSTP14 is the transporter specifc for galactose and does not transport other monosaccharides such as glucose or fructose.	sugar transporter 14;(source:Araport11)
AT1G77320.2	protein_coding	transcription coactivators	Mutant is defective in meiosis and produces abnormal microspores. Encodes a BRCT-domain-containing protein that could be specific to the meiotic cell cycle and that plays a crucial role in some DNA repair events independent of SPO11 DSB recombination repair.	transcription coactivator;(source:Araport11)
AT1G77460.2	protein_coding	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein	Encodes a plasma membrane, microtubule associated protein with sequence similarity to CSI1 that is involved in cellulose biosynthesis and cell elongation. A mutation in CSI3 alone do not appear to affect growth but enhances the cell elongation phenotype of CSI1 mutants. CSI3 co localizes with CSI1 and CESA3 and CESA6.	CELLULOSE SYNTHASE INTERACTIVE 3;(source:Araport11)
AT1G77600.2	protein_coding	ARM repeat superfamily protein	One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	ARM repeat superfamily protein;(source:Araport11)
AT1G77600.3	protein_coding	ARM repeat superfamily protein	One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	ARM repeat superfamily protein;(source:Araport11)
AT1G77800.2	protein_coding	PHD finger family protein		PHD finger family protein;(source:Araport11)
AT1G77890.3	protein_coding	DNA-directed RNA polymerase II protein		DNA-directed RNA polymerase II protein;(source:Araport11)
AT1G78150.3	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT1G78420.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT1G78476.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G78540.2	protein_coding	SH2 domain protein B	Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.	SH2 domain protein B;(source:Araport11)
AT1G78600.2	protein_coding	light-regulated zinc finger protein 1		light-regulated zinc finger protein 1;(source:Araport11)
AT1G78680.2	protein_coding	gamma-glutamyl hydrolase 2	The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.	gamma-glutamyl hydrolase 2;(source:Araport11)
AT1G78865.1	other_rna			other_RNA;(source:Araport11)
AT1G78915.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G78915.3	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G78940.2	protein_coding	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain		kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT1G79000.2	protein_coding	histone acetyltransferase of the CBP family 1	Homologous to CREB-binding protein, a co-activator of transcription with histone acetyl-transferase activity. No  single prior lysine acetylation is sufficient to block HAC1 acetylation of the H3 or H4 peptides,  suggesting that HAC1, HAC5, and HAC12 can acetylate any  of several lysines present in the peptides. HAM2 acetylates histone H4 lysine 5. A plant line expressing an RNAi construct targeted against HAC1 has reduced rates of agrobacterium-mediated root transformation.	histone acetyltransferase of the CBP family 1;(source:Araport11)
AT1G79250.2	protein_coding	AGC kinase 1.7		AGC kinase 1.7;(source:Araport11)
AT1G79280.2	protein_coding	nuclear pore anchor	Encodes a 237-kDA protein with similarity to vertebrate Tpr, a long coiled-coil proteins of nuclear pore inner basket filaments.  It is localized to the inner surface of the nuclear envelope and is a component of the nuclear pore-associated steps of sumoylation and mRNA export in plants.  Mutations affect flowering time regulation and other developmental processes.  Probably acts in the same pathway as ESD4 in affecting flowering time, vegetative and inflorescence development.	nuclear pore anchor;(source:Araport11)
AT1G79280.3	protein_coding	nuclear pore anchor	Encodes a 237-kDA protein with similarity to vertebrate Tpr, a long coiled-coil proteins of nuclear pore inner basket filaments.  It is localized to the inner surface of the nuclear envelope and is a component of the nuclear pore-associated steps of sumoylation and mRNA export in plants.  Mutations affect flowering time regulation and other developmental processes.  Probably acts in the same pathway as ESD4 in affecting flowering time, vegetative and inflorescence development.	nuclear pore anchor;(source:Araport11)
AT1G79520.2	protein_coding	Cation efflux family protein		Cation efflux family protein;(source:Araport11)
AT1G79640.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT1G79650.4	protein_coding	Rad23 UV excision repair protein family	Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.	Rad23 UV excision repair protein family;(source:Araport11)
AT1G79820.4	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT1G79830.3	protein_coding	golgin candidate 5	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast.  A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).	golgin Putative 5;(source:Araport11)
AT1G79830.4	protein_coding	golgin candidate 5	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast.  A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).	golgin Putative 5;(source:Araport11)
AT1G79840.2	protein_coding	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain	Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development.  Directly regulated by WER.	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein;(source:Araport11)
AT1G79870.2	protein_coding	D-isomer specific 2-hydroxyacid dehydrogenase family protein	Hydroxyphenylpyruvate reductase (HPPR), which catalyzes the reduction of 4-hydroxyphenylpyruvic acid (pHPP) to 4-hydroxyphenyllactic acid (pHPL). Together with HPPR3 and TAT1 involved in the biosynthesis of pHPL from tyrosine.	D-isomer specific 2-hydroxyacid dehydrogenase family protein;(source:Araport11)
AT1G79940.4	protein_coding	DnaJ / Sec63 Brl domains-containing protein	J domain protein localized in ER membrane. Mutants have defective pollen germination.	DnaJ / Sec63 Brl domains-containing protein;(source:Araport11)
AT1G80040.3	protein_coding			ubiquitin system component Cue;(source:Araport11)
AT1G80380.4	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G80410.2	protein_coding	tetratricopeptide repeat (TPR)-containing protein	Encodes the catalytic subunit of a N-terminal acetyltransferase.	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT1G80420.4	protein_coding	BRCT domain-containing DNA repair protein	Encodes a component of plant break excision repair and functions at several stages during active DNA demethylation in Arabidopsis.	BRCT domain-containing DNA repair protein;(source:Araport11)
AT1G80660.2	protein_coding	H(+)-ATPase 9		H[+]-ATPase 9;(source:Araport11)
AT1G80770.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G80780.3	protein_coding	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	Deadenylase.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G80970.2	protein_coding	XH domain-containing protein		XH domain-containing protein;(source:Araport11)
AT2G01090.2	protein_coding	Ubiquinol-cytochrome C reductase hinge protein		Ubiquinol-cytochrome C reductase hinge protein;(source:Araport11)
AT2G01120.2	protein_coding	origin recognition complex subunit 4	Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.	origin recognition complex subunit 4;(source:Araport11)
AT2G01422.1	other_rna			other_RNA;(source:Araport11)
AT2G01422.2	other_rna			other_RNA;(source:Araport11)
AT2G01460.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G01640.2	protein_coding			ribosome biogenesis protein;(source:Araport11)
AT2G01750.2	protein_coding	microtubule-associated proteins 70-3	Encodes a microtubule associated protein (MAP70-3). Expressed in all tissues.	microtubule-associated proteins 70-3;(source:Araport11)
AT2G02020.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT2G02148.1	protein_coding			PPR containing protein;(source:Araport11)
AT2G02410.2	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT2G02410.3	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT2G02470.2	protein_coding	alfin-like 6	Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins that acts as  a novel upstream regulator of root hair formation during Pi starvation. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 6;(source:Araport11)
AT2G03140.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G03390.2	protein_coding	uvrB/uvrC motif-containing protein		uvrB/uvrC motif-containing protein;(source:Araport11)
AT2G03600.4	protein_coding	ureide permease 3	Encodes UPS3 (ureide permease 3), similar to UPS1, an allantoin transporter.	ureide permease 3;(source:Araport11)
AT2G03600.5	protein_coding	ureide permease 3	Encodes UPS3 (ureide permease 3), similar to UPS1, an allantoin transporter.	ureide permease 3;(source:Araport11)
AT2G03640.3	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT2G03640.4	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT2G04115.1	protein_coding	Plant self-incompatibility protein S1 family		Plant self-incompatibility protein S1 family;(source:Araport11)
AT2G04270.5	protein_coding	RNAse E/G-like	Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.	RNAse E/G-like protein;(source:Araport11)
AT2G05120.2	protein_coding	Nucleoporin, Nup133/Nup155-like		Nucleoporin, Nup133/Nup155-like protein;(source:Araport11)
AT2G05185.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G05812.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G05810;(source:Araport11)
AT2G05914.1	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT2G05915	Natural antisense transcript overlaps with AT2G05915;(source:Araport11)
AT2G06555.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G07180.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G07360.2	protein_coding	SH3 domain-containing protein	TPLATE-associated SH3 domain containing protein.	SH3 domain-containing protein;(source:Araport11)
AT2G07599.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07599.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G07667.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G07690.2	protein_coding	Minichromosome maintenance (MCM2/3/5) family protein	Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and  endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the  cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.	Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT2G07708.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G07806.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G10608.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G11623.2	protein_coding	Plant protein 1589 of unknown function		Plant protein 1589 of unknown function;(source:Araport11)
AT2G13650.3	protein_coding	golgi nucleotide sugar transporter 1	Encodes a Golgi-localized GDP-mannose transporter.  It can transport ADP-glucose in vitro.	golgi nucleotide sugar transporter 1;(source:Araport11)
AT2G13975.2	transposable_element_gene			transposable_element_gene;(source:Araport11);similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43920.1);(source:TAIR10)
AT2G14045.3	protein_coding			c-Myc-binding protein;(source:Araport11)
AT2G14680.3	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT2G14760.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G14878.1	other_rna			other_RNA;(source:Araport11)
AT2G15480.2	protein_coding	UDP-glucosyl transferase 73B5		UDP-glucosyl transferase 73B5;(source:Araport11)
AT2G15490.3	protein_coding	UDP-glycosyltransferase 73B4		UDP-glycosyltransferase 73B4;(source:Araport11)
AT2G15530.4	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G15580.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G15910.2	protein_coding	CSL zinc finger domain-containing protein		CSL zinc finger domain-containing protein;(source:Araport11)
AT2G15970.2	protein_coding	cold regulated 413 plasma membrane 1	encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. The mRNA is cell-to-cell mobile.	cold regulated 413 plasma membrane 1;(source:Araport11)
AT2G16200.2	protein_coding	structural molecules		structural molecule;(source:Araport11)
AT2G16700.2	protein_coding	actin depolymerizing factor 5	Encodes actin depolymerizing factor 5 (ADF5).	actin depolymerizing factor 5;(source:Araport11)
AT2G16710.3	protein_coding	Iron-sulphur cluster biosynthesis family protein		Iron-sulfur cluster biosynthesis family protein;(source:Araport11)
AT2G16940.2	protein_coding	Splicing factor, CC1-like		Splicing factor, CC1-like protein;(source:Araport11)
AT2G16940.3	protein_coding	Splicing factor, CC1-like		Splicing factor, CC1-like protein;(source:Araport11)
AT2G17360.2	protein_coding	Ribosomal protein S4 (RPS4A) family protein		Ribosomal protein S4 (RPS4A) family protein;(source:Araport11)
AT2G17410.2	protein_coding	ARID/BRIGHT DNA-binding domain-containing protein	AT Rich domain protein.	ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT2G17510.2	protein_coding	ribonuclease II family protein		ribonuclease II family protein;(source:Araport11)
AT2G17530.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G17695.3	protein_coding			outer envelope protein;(source:Araport11)
AT2G17730.2	protein_coding	NEP-interacting protein 2	Intrinsic thylakoid membrane  protein that fixes RPOTmp on the stromal side of the thylakoid  membrane.	NEP-interacting protein 2;(source:Araport11)
AT2G17770.2	protein_coding	basic region/leucine zipper motif 27	Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT.	basic region/leucine zipper motif 27;(source:Araport11)
AT2G17970.3	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G18000.2	protein_coding	TBP-associated factor 14		TBP-associated factor 14;(source:Araport11)
AT2G18300.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G18340.2	protein_coding	late embryogenesis abundant domain-containing protein / LEA domain-containing protein		late embryogenesis abundant domain-containing protein / LEA domain-containing protein;(source:Araport11)
AT2G18440.2	other_rna		Encodes a noncoding RNA, a member of an emerging class of transcripts that lack significant open reading frames and encode RNA as their final product. Has been identified as a translated small open reading frame by ribosome profiling.	other_RNA;(source:Araport11)
AT2G18750.3	protein_coding	Calmodulin-binding protein		Calmodulin-binding protein;(source:Araport11)
AT2G18850.2	protein_coding	SET domain-containing protein		SET domain-containing protein;(source:Araport11)
AT2G19280.2	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G19480.3	protein_coding	nucleosome assembly protein 1;2	This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation. The mRNA is cell-to-cell mobile. Plants mutated in three ubiquitously expressed NAP1 genes (NAP1;1~NAP1;3) and organ-specifically expressed NAP1;4 gene show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. The NAP1 genes act synergistically with NRP genes in promoting somatic homologous recombination.	nucleosome assembly protein 1;(source:Araport11)
AT2G19572.1	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT2G19570	Natural antisense transcript overlaps with AT2G19570;(source:Araport11)
AT2G19690.2	protein_coding	phospholipase A2-beta	Encodes one of the four Arabidopsis phospholipase PLA2 parologs: AT2G06925 (PLA2-ALPHA), AT2G19690 (PLA2-BETA), AT4G29460 (PLA2-GAMMA) and AT4G29470 (PLA2-DELTA). Involved in pollen development and germination and tube growth. Also involved in stomatal opening in response to light.	phospholipase A2-beta;(source:Araport11)
AT2G19880.2	protein_coding	Nucleotide-diphospho-sugar transferases superfamily protein	Encodes Glucosylceramide synthase (GCS) which catalyzes the final step in glucosylceramide (GlcCer) synthesis by transferring a glucosyl residue from UDP-Glc to the ceramide backbone.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT2G19950.2	protein_coding	golgin candidate 1	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast.  A fluorescently-tagged version of GC1 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (558-715 aa) portion of the protein.	golgin Putative 1;(source:Araport11)
AT2G20050.2	protein_coding	protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases		protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein;(source:Araport11)
AT2G20170.3	protein_coding	Protein of Unknown Function (DUF239)		NEP-interacting protein, putative (DUF239);(source:Araport11)
AT2G20180.3	protein_coding	phytochrome interacting factor 3-like 5	Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark.  It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls.  Light reduces this activity in a phy-dependent manner.  The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis.  It also negatively regulates GA3 oxidase expression.	phytochrome interacting factor 3-like 5;(source:Araport11)
AT2G20270.2	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT2G20390.2	protein_coding			cytochrome oxidase complex assembly protein;(source:Araport11)
AT2G20570.2	protein_coding	GBF's pro-rich region-interacting factor 1	Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.	GBFs pro-rich region-interacting factor 1;(source:Araport11)
AT2G20815.2	protein_coding	Family of unknown function (DUF566) 		QWRF motif protein (DUF566);(source:Araport11)
AT2G20830.3	protein_coding	transferases;folic acid binding		folic acid binding / transferase;(source:Araport11)
AT2G20990.2	protein_coding	synaptotagmin A	Encodes a protein specifically localized to the ER-PM boundary with similarity to synaptotagmins, a class of membrane trafficking proteins. SYT1 is expressed in all tissues.  Loss of function mutations show hypersensitivity to NaCl and electrolyte leakage from the plasma membrane. SYT1 also affects calcium dependent freezing tolerance and mechanical stress response.  Regulates endocytosis endosome  recycling at the plasma membrane, but not membrane traffic along the secretory pathway. SYT1 may have a role in membrane repair such as membrane resealing after freezing induced damage. SYT1 binds to phosphatidylinositol phosphates in vitro. It is distributed to immobile tubules and likely plays an important role in the formation of the tubular ER network as well as in cellular ER-PM tethering.	synaptotagmin A;(source:Araport11)
AT2G20990.3	protein_coding	synaptotagmin A	Encodes a protein specifically localized to the ER-PM boundary with similarity to synaptotagmins, a class of membrane trafficking proteins. SYT1 is expressed in all tissues.  Loss of function mutations show hypersensitivity to NaCl and electrolyte leakage from the plasma membrane. SYT1 also affects calcium dependent freezing tolerance and mechanical stress response.  Regulates endocytosis endosome  recycling at the plasma membrane, but not membrane traffic along the secretory pathway. SYT1 may have a role in membrane repair such as membrane resealing after freezing induced damage. SYT1 binds to phosphatidylinositol phosphates in vitro. It is distributed to immobile tubules and likely plays an important role in the formation of the tubular ER network as well as in cellular ER-PM tethering.	synaptotagmin A;(source:Araport11)
AT2G21070.3	protein_coding	methyltransferases	This gene is predicted to an encode a nuclear-localized protein that is involved in regulating the period of circadian rhythms without affecting their amplitude or robustness. FIONA1 seems to act as a central oscillator-associated component, but its transcript levels are not regulated in a circadian or light-dependent manner. FIONA1 also appears to be involved in photoperiod-dependent flowering.	methyltransferase;(source:Araport11)
AT2G21187.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G21185;(source:Araport11)
AT2G21385.3	protein_coding		Encodes a chloroplast stroma localized protein that is found only in the green plant lineage. It is involved in assembly of the chloroplast ATP synthase complex.	hypothetical protein;(source:Araport11)
AT2G21385.4	protein_coding		Encodes a chloroplast stroma localized protein that is found only in the green plant lineage. It is involved in assembly of the chloroplast ATP synthase complex.	hypothetical protein;(source:Araport11)
AT2G21470.3	protein_coding	SUMO-activating enzyme 2	Encodes one of the two subunits of the SUMO activation enzyme required during sumolation.  Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.	SUMO-activating enzyme 2;(source:Araport11)
AT2G21540.3	protein_coding	SEC14-like 3		SEC14-like 3;(source:Araport11)
AT2G21800.2	protein_coding	essential meiotic endonuclease 1A	Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.	essential meiotic endonuclease 1A;(source:Araport11)
AT2G22010.2	protein_coding	related to KPC1	Encodes a protein predicted to act as a RING E3 ubiquitin ligase. It appears to regulate the stability of the KRP1/ICK1 cyclin dependent kinase inhibitor.  Induced by beet severe curly virus (BSCTV) C4 protein.	related to KPC1;(source:Araport11)
AT2G22120.2	protein_coding	RING/FYVE/PHD zinc finger superfamily protein		RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G22310.2	protein_coding	ubiquitin-specific protease 4	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 4;(source:Araport11)
AT2G22482.1	other_rna			other_RNA;(source:Araport11)
AT2G22490.2	protein_coding	Cyclin D2;1	encodes a D-type cyclin whose transcription level is regulated by sucrose but not phytohormones or nitrate. Protein physically interacts with CDC2A. CycD2 kinase activity is regulated by sequestration of CycD2 protein in a form inaccessible to immunoprecipitation and probably not complexed to CDC2A.	Cyclin D2;(source:Araport11)
AT2G22610.2	protein_coding	Di-glucose binding protein with Kinesin motor domain		Di-glucose binding protein with Kinesin motor domain-containing protein;(source:Araport11)
AT2G22620.2	protein_coding	Rhamnogalacturonate lyase family protein		Rhamnogalacturonate lyase family protein;(source:Araport11)
AT2G22670.4	protein_coding	indoleacetic acid-induced protein 8	Encodes a transcriptional repressor of the auxin response that is auxin inducible and is involved in lateral root formation. The mRNA is cell-to-cell mobile.	indoleacetic acid-induced protein 8;(source:Araport11)
AT2G22850.2	protein_coding	basic leucine-zipper 6		basic leucine-zipper 6;(source:Araport11)
AT2G22920.3	protein_coding	serine carboxypeptidase-like 12		serine carboxypeptidase-like 12;(source:Araport11)
AT2G23110.2	protein_coding	Late embryogenesis abundant protein, group 6		Late embryogenesis abundant protein, group 6;(source:Araport11)
AT2G23140.2	protein_coding	RING/U-box superfamily protein with ARM repeat domain	PUB4 encodes a functional ubiquitin-protein ligase. The gene is expressed in most plant tissues and the protein localizes to the nucleus. PUB4 has been recovered as a second site suppressor from several different genetic screens and from these, it has been inferred to have  roles in regulating  root development, pollen tapetum development and ROS induced chloroplast degredation.	RING/U-box superfamily protein with ARM repeat domain-containing protein;(source:Araport11)
AT2G23580.2	protein_coding	methyl esterase 4	Encodes a protein shown to have carboxylesterase activity and methyl salicylate esterase activity in vitro. This protein does not act on methyl IAA, methyl JA, MeGA4, or MEGA9 in vitro.	methyl esterase 4;(source:Araport11)
AT2G23740.2	protein_coding	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding	Encodes a SET-domain protein SUVR5 that mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.	histone-lysine N-methyltransferase SUVR5;(source:Araport11)
AT2G24020.2	protein_coding	Uncharacterised BCR, YbaB family COG0718	STIC2 was identifided in a screen for suppressors of  chloroplast protein import defect  in tic40.	Putative BCR, YbaB family COG0718;(source:Araport11)
AT2G24200.3	protein_coding	Cytosol aminopeptidase family protein		Cytosol aminopeptidase family protein;(source:Araport11)
AT2G24220.2	protein_coding	purine permease 5	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 5;(source:Araport11)
AT2G24270.3	protein_coding	aldehyde dehydrogenase 11A3	Encodes a protein with non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase activity. The activity of the enzyme was determined from leaf extracts; the enzyme has not been purified to confirm activity.	aldehyde dehydrogenase 11A3;(source:Araport11)
AT2G24270.4	protein_coding	aldehyde dehydrogenase 11A3	Encodes a protein with non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase activity. The activity of the enzyme was determined from leaf extracts; the enzyme has not been purified to confirm activity.	aldehyde dehydrogenase 11A3;(source:Araport11)
AT2G24390.3	protein_coding	AIG2-like (avirulence induced gene) family protein		AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT2G24600.4	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT2G24640.2	protein_coding	ubiquitin-specific protease 19		ubiquitin-specific protease 19;(source:Araport11)
AT2G24645.1	protein_coding	Transcriptional factor B3 family protein		Transcriptional factor B3 family protein;(source:Araport11)
AT2G24680.2	protein_coding	transcriptional factor B3 family protein		transcriptional factor B3 family protein;(source:Araport11)
AT2G24681.1	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT2G25220.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G25290.3	protein_coding	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT2G25370.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G25510.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G25730.2	protein_coding			zinc finger FYVE domain protein;(source:Araport11)
AT2G25850.4	protein_coding	poly(A) polymerase 2	Encodes a poly(A) polymerase. Located in the nucleus.	poly(A) polymerase 2;(source:Araport11)
AT2G25900.2	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein	Encodes a protein with two tandem-arrayed CCCH-type zinc fingers that binds RNA and is involved in RNA turnover. The mRNA is cell-to-cell mobile.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT2G26210.3	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT2G26310.2	protein_coding	Chalcone-flavanone isomerase family protein	Encodes a plastid stroma localized fatty acid binding protein.	Chalcone-flavanone isomerase family protein;(source:Araport11)
AT2G26310.3	protein_coding	Chalcone-flavanone isomerase family protein	Encodes a plastid stroma localized fatty acid binding protein.	Chalcone-flavanone isomerase family protein;(source:Araport11)
AT2G26340.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G26510.2	protein_coding	Xanthine/uracil permease family protein	Encodes a plasma-membrane localized nucleobase transporter capable of transporting adenine, guanine, uracil and hypoxanthine. Likely to be a proton-nucleobase symporter.	Xanthine/uracil permease family protein;(source:Araport11)
AT2G26550.2	protein_coding	heme oxygenase 2	Encodes a heme oxygenase-like protein lacking the conserved histidine residue at the active site that is usually involved in heme-iron coordination.  It is unable to bind and degrade heme.  Mutant analyses suggest a role in photomorphogenesis.  The protein can bind the heme precursor, proto IX, which could be biologically significant and point to a role in the regulation of the two tetrapyrrole biosynthetic pathways.	heme oxygenase 2;(source:Araport11)
AT2G26550.3	protein_coding	heme oxygenase 2	Encodes a heme oxygenase-like protein lacking the conserved histidine residue at the active site that is usually involved in heme-iron coordination.  It is unable to bind and degrade heme.  Mutant analyses suggest a role in photomorphogenesis.  The protein can bind the heme precursor, proto IX, which could be biologically significant and point to a role in the regulation of the two tetrapyrrole biosynthetic pathways.	heme oxygenase 2;(source:Araport11)
AT2G26840.2	protein_coding		Encodes a Holliday junction resolvase that binds and cleaves the core of Holliday junctions symmetrically. It appears to mediate chloroplast nucleoid segregation during chloroplast division.	MutS2;(source:Araport11)
AT2G27040.2	protein_coding	Argonaute family protein	AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens including Tobacco rattle virus.	Argonaute family protein;(source:Araport11)
AT2G27210.2	protein_coding	BRI1 suppressor 1 (BSU1)-like 3		BRI1 suppressor 1 (BSU1)-like 3;(source:Araport11)
AT2G27220.2	protein_coding	BEL1-like homeodomain 5		BEL1-like homeodomain 5;(source:Araport11)
AT2G27350.6	protein_coding	OTU-like cysteine protease family protein	Encodes an otubain-like histone deubiquitinase involved in chromatin modification and regulation of plant gene expression.	OTU-like cysteine protease family protein;(source:Araport11)
AT2G27385.2	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT2G27385.3	protein_coding	Pollen Ole e 1 allergen and extensin family protein		Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT2G27389.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G27580.2	protein_coding	A20/AN1-like zinc finger family protein	Regulated by heat shock.	A20/AN1-like zinc finger family protein;(source:Araport11)
AT2G27710.4	protein_coding	60S acidic ribosomal protein family		60S acidic ribosomal protein family;(source:Araport11)
AT2G27790.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G28450.2	protein_coding	zinc finger (CCCH-type) family protein		zinc finger (CCCH-type) family protein;(source:Araport11)
AT2G28470.2	protein_coding	beta-galactosidase 8	putative beta-galactosidase (BGAL8 gene)	beta-galactosidase 8;(source:Araport11)
AT2G28550.3	protein_coding	related to AP2.7		related to AP2.7;(source:Araport11)
AT2G28800.4	protein_coding	63 kDa inner membrane family protein	member of Chloroplast membrane protein ALBINO3 family. Similar to pea PPF1 and may play a role in plant senescence.	63 kDa inner membrane family protein;(source:Araport11)
AT2G28810.2	protein_coding	Dof-type zinc finger DNA-binding family protein		Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT2G29065.1	protein_coding	GRAS family transcription factor		GRAS family transcription factor;(source:Araport11)
AT2G29090.2	protein_coding	cytochrome P450, family 707, subfamily A, polypeptide 2	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.	cytochrome P450, family 707, subfamily A, polypeptide 2;(source:Araport11)
AT2G29190.2	protein_coding	pumilio 2	Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.	pumilio 2;(source:Araport11)
AT2G29300.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G29310.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G29525.3	protein_coding	Arabidopsis Inositol phosphorylceramide synthase 3	Inositol phosphorylceramide synthase	Inositol phosphorylceramide synthase 3;(source:Araport11)
AT2G29630.3	protein_coding	thiaminC	Encodes a protein involved in thiamin biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine (HMP) or  hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. A conserved TPP-binding site is located in the 3 Prime UTR of the At2g29630.2 gene model, and is predicted to function as a riboswitch. The riboswitch controls the  formation of transcripts with alternative 3 Prime UTR lengths, which affect mRNA accumulation and protein production. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene.  Recessive mutant isolated by Redei. Leaves but not cotyledons white, lethal; restored to normal by thiamine or 2,5-dimethyl-4-aminopyrimidine.	thiaminC;(source:Araport11)
AT2G29890.3	protein_coding	villin-like 1	Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed.  Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding.  VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.	villin-like 1;(source:Araport11)
AT2G30105.1	protein_coding			LRR/ubiquitin-like domain protein;(source:Araport11)
AT2G30290.2	protein_coding	VACUOLAR SORTING RECEPTOR 2		VACUOLAR SORTING RECEPTOR 2;(source:Araport11)
AT2G30370.2	protein_coding	allergen-related	Encodes a small, potentially secreted protein that acts as an inhibitor of stomatal production though likely not through direct interaction with the TMM receptor.  It is homologous to known stomatal regulators EPF1 and EPF2.	allergen-like protein;(source:Araport11)
AT2G30390.2	protein_coding	ferrochelatase 2	Encodes one of two ferrochelatase genes in Arabidopsis. Ferrochelatase is the terminal enzyme of heme biosynthesis.  FC-II is speculated to operate in photosynthetic cytochromes.	ferrochelatase 2;(source:Araport11)
AT2G30410.2	protein_coding	tubulin folding cofactor A (KIESEL)	mutant has embryo defect; enlarged embryo cells and endosperm nuclei; Tubulin Folding Cofactor A	tubulin folding cofactor A (KIESEL);(source:Araport11)
AT2G30500.2	protein_coding	Kinase interacting (KIP1-like) family protein		Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT2G30600.5	protein_coding	BTB/POZ domain-containing protein		BTB/POZ domain-containing protein;(source:Araport11)
AT2G30620.2	protein_coding	winged-helix DNA-binding transcription factor family protein		winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT2G30766.2	protein_coding		Functions in iron homeostasis, activates iron deficiency response genes such as bHLH38, bHLH39, IRT1, and FRO2.	hypothetical protein;(source:Araport11)
AT2G30910.3	protein_coding	actin-related protein C1A		actin-related protein C1A;(source:Araport11)
AT2G30945.1	other_rna			None;(source:Araport11)
AT2G31010.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT2G31060.3	protein_coding	elongation factor family protein		elongation factor family protein;(source:Araport11)
AT2G31141.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G31190.2	protein_coding	Protein of unknown function, DUF647	Encodes RUS2 (root UVB sensitive2), a DUF647-containing protein that is homologous to the RUS1 protein. RUS2 works with RUS1 in a root UV-B sensing pathway that plays a vital role in Arabidopsis early seedling morphogenesis and development.  Required for auxin polar transport.	root UVB sensitive protein (Protein of unknown function, DUF647);(source:Araport11)
AT2G31370.6	protein_coding	Basic-leucine zipper (bZIP) transcription factor family protein		Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G31830.2	protein_coding	endonuclease/exonuclease/phosphatase family protein	Encodes a 5-inositol-polyphosphate phosphatase, that, in vitro, shows some activity against Ins(1,4,5)P3 and PI(3,4,5)P3, but even higher activity against PI(4,5)P2	endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT2G31902.1	antisense_rna			Natural antisense transcript overlaps with AT2G31900;(source:Araport11)
AT2G31955.3	protein_coding	cofactor of nitrate reductase and xanthine dehydrogenase 2	COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria.	cofactor of nitrate reductase and xanthine dehydrogenase 2;(source:Araport11)
AT2G31960.2	protein_coding	glucan synthase-like 3	encodes a protein similar to callose synthase	glucan synthase-like 3;(source:Araport11)
AT2G32010.2	protein_coding	CVP2 like 1	Encodes an inositol polyphosphate 5’-phosphatase (5PTase).  Mediating phosphoinositide signaling.  Involved in establishment of foliar vein patterns.	CVP2 like 1;(source:Araport11)
AT2G32390.3	protein_coding	glutamate receptor  3.5	Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family.	glutamate receptor 3.5;(source:Araport11)
AT2G32415.2	protein_coding	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain		Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein;(source:Araport11)
AT2G32440.2	protein_coding	ent-kaurenoic acid hydroxylase 2	ent-kaurenoic acid hydroxylase (KAO2)	ent-kaurenoic acid hydroxylase 2;(source:Araport11)
AT2G32580.2	protein_coding	Protein of unknown function (DUF1068)		transmembrane protein, putative (DUF1068);(source:Araport11)
AT2G32700.7	protein_coding	LEUNIG_homolog	Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. Involved in cell wall modifications necessary for mucilage extrusion and mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification.	LEUNIG-like protein;(source:Araport11)
AT2G32810.2	protein_coding	beta galactosidase 9	putative beta-galactosidase	beta galactosidase 9;(source:Araport11)
AT2G32930.2	protein_coding	zinc finger nuclease 2	Encodes a zinc finger protein.	zinc finger nuclease 2;(source:Araport11)
AT2G32970.2	protein_coding			G1/S-specific cyclin-E protein;(source:Araport11)
AT2G33070.3	protein_coding	nitrile specifier protein 2	Encodes a nitrile-specifier protein NSP2. NSP2 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.	nitrile specifier protein 2;(source:Araport11)
AT2G33120.3	protein_coding	synaptobrevin-related protein 1	Encodes a member of Synaptobrevin-like protein family. Also known as VESICLE-ASSOCIATED MEMBRANE PROTEIN 722 (VAMP722). Required for cell plate formation. Post-transcriptionally regulated by CRT1/2 under ER stress.	synaptobrevin-related protein 1;(source:Araport11)
AT2G33210.2	protein_coding	heat shock protein 60-2	Involved in the RNA splicing of rpl2 and ccmFC introns in mitochondria.	heat shock protein 60-2;(source:Araport11)
AT2G33385.2	protein_coding	actin-related protein C2B		actin-related protein C2B;(source:Araport11)
AT2G33510.2	protein_coding		CFL1 is a negative regulator of cuticle development. Overexpression of CFL1 causes defects in cuticle formation. Interacts with FBH1, FBH3 and HDG1 to regulate cuticle formation.  The physical interaction requires the C terminal 50 amino acids.	ATP-dependent RNA helicase;(source:Araport11)
AT2G33560.2	protein_coding	BUB1-related (BUB1: budding uninhibited by benzymidazol 1)	Encodes BUBR1.  May have the spindle assembly checkpoint protein functions conserved from yeast to humans.	BUB1-related (BUB1: budding uninhibited by benzymidazol 1);(source:Araport11)
AT2G33710.2	protein_coding	Integrase-type DNA-binding superfamily protein	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G34090.3	protein_coding	maternal effect embryo arrest 18		maternal effect embryo arrest 18;(source:Araport11)
AT2G34185.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G34185.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G34315.2	protein_coding	Avirulence induced gene (AIG1) family protein		avirulence induced family protein;(source:Araport11)
AT2G34660.2	protein_coding	multidrug resistance-associated protein 2	encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump.  An ABCC-type arsenite-phytochelatin transporter. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. The mRNA is cell-to-cell mobile.	multidrug resistance-associated protein 2;(source:Araport11)
AT2G34670.2	protein_coding	Protein of unknown function (DUF630 and DUF632)		benzoyl-CoA reductase subunit C, putative (DUF630 and DUF632);(source:Araport11)
AT2G34730.2	protein_coding	myosin heavy chain-related		myosin heavy chain-like protein;(source:Araport11)
AT2G34740.2	protein_coding	Protein phosphatase 2C family protein		protein phosphatase 2C family protein;(source:Araport11)
AT2G34780.2	protein_coding	maternal effect embryo arrest 22	Encodes a novel protein of unknown function that is essential for embryonic development. Severe loss of function alleles are embryo lethal. Analysis  of a partial loss of function allele indicates a role for EMB1611 in regulation of endoreduplication and maintenance of meristem cell fate. It appears to be required for maintaining the CLV-WUS regulatory pathway.	maternal effect embryo arrest 22;(source:Araport11)
AT2G35035.2	protein_coding	urease accessory protein D	Encodes a urease accessory protein which is essential for the activation of plant urease.	urease accessory protein D;(source:Araport11)
AT2G35040.2	protein_coding	AICARFT/IMPCHase bienzyme family protein		AICARFT/IMPCHase bienzyme family protein;(source:Araport11)
AT2G35130.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G35330.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G35620.2	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.Mucilage is easily detached from fei2 mutants seeds, and forms a capsule that is >50% smaller relative to wild-type.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G35736.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G35830.2	protein_coding			ureidoglycolate hydrolase;(source:Araport11)
AT2G35840.3	protein_coding	Sucrose-6F-phosphate phosphohydrolase family protein		Sucrose-6F-phosphate phosphohydrolase family protein;(source:Araport11)
AT2G35859.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G35860;(source:Araport11)
AT2G36200.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G36360.3	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G36360.4	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G36360.5	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G36870.2	protein_coding	xyloglucan endotransglucosylase/hydrolase 32	Encodes a xyloglucan endotransglycosylase/hydrolase. Protein sequence and phylogenetic analysis indicates that this enzyme resides in Group III-A of the XTH family, with high similarity to Tropaeolum majus (nasturtium) xyloglucanase 1 (TmNXG1). By sequence similarity to XTH31 (At3g44990) and in vivo analysis, likely to exhibit predominant xyloglucan endo-hydrolase activity (EC 3.2.1.151) with only limited potential to act as a xyloglucan endo-transglycosylase (EC 2.4.1.207).	xyloglucan endotransglucosylase/hydrolase 32;(source:Araport11)
AT2G36960.3	protein_coding	TSL-kinase interacting protein 1	Arabidopsis thaliana myb/SANT domain protein	TSL-kinase interacting protein 1;(source:Araport11)
AT2G37020.2	protein_coding	Translin family protein		Translin family protein;(source:Araport11)
AT2G37150.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G37210.2	protein_coding	lysine decarboxylase family protein	Encodes a protein of unknown function.  It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.	lysine decarboxylase family protein;(source:Araport11)
AT2G37290.2	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G37300.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G37362.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G37360;(source:Araport11)
AT2G37390.2	protein_coding	Chloroplast-targeted copper chaperone protein		Chloroplast-targeted copper chaperone protein;(source:Araport11)
AT2G38160.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G38400.2	protein_coding	alanine:glyoxylate aminotransferase 3	alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA,	alanine:glyoxylate aminotransferase 3;(source:Araport11)
AT2G38650.2	protein_coding	galacturonosyltransferase 7		galacturonosyltransferase 7;(source:Araport11)
AT2G38660.4	protein_coding	Amino acid dehydrogenase family protein		Amino acid dehydrogenase family protein;(source:Araport11)
AT2G38880.7	protein_coding	nuclear factor Y, subunit B1	Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1.  Confers drought tolerance.	nuclear factor Y, subunit B1;(source:Araport11)
AT2G38880.8	protein_coding	nuclear factor Y, subunit B1	Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1.  Confers drought tolerance.	nuclear factor Y, subunit B1;(source:Araport11)
AT2G38890.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G38900.2	protein_coding	Serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family.  Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	Serine protease inhibitor, potato inhibitor I-type family protein;(source:Araport11)
AT2G38960.3	protein_coding	endoplasmic reticulum oxidoreductins 2	Encodes an oxidoreductin required for oxidative protein folding in the ER and exists in two distinct oxidized isoforms (Ox1 and Ox2), which are determined by the formation or breakage of the putative regulatory disulfide. AtERO2 is mainly present in the Ox2 redox state.	endoplasmic reticulum oxidoreductins 2;(source:Araport11)
AT2G38995.2	protein_coding	O-acyltransferase (WSD1-like) family protein		O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT2G39280.2	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G39300.2	protein_coding			CAP-gly domain linker;(source:Araport11)
AT2G39435.2	protein_coding	Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related		Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT2G39770.2	protein_coding	Glucose-1-phosphate adenylyltransferase family protein	Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for ascorbate (vitamin C) biosynthesis.  Mutations in this gene confer hypersensitivity to NH4+.	Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT2G39800.3	protein_coding	delta1-pyrroline-5-carboxylate synthase 1	encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner.  Mutants are defective in pollen development.	delta1-pyrroline-5-carboxylate synthase 1;(source:Araport11)
AT2G39800.4	protein_coding	delta1-pyrroline-5-carboxylate synthase 1	encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner.  Mutants are defective in pollen development.	delta1-pyrroline-5-carboxylate synthase 1;(source:Araport11)
AT2G39920.2	protein_coding	HAD superfamily, subfamily IIIB acid phosphatase 		HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT2G39920.3	protein_coding	HAD superfamily, subfamily IIIB acid phosphatase 		HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT2G40050.2	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G40100.2	protein_coding	light harvesting complex photosystem II	Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II The mRNA is cell-to-cell mobile.	light harvesting complex photosystem II;(source:Araport11)
AT2G40160.2	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT2G40430.3	protein_coding		Encodes a homolog of yeast NOP53 that is an important regulator of cell division during organ growth.	Nop53 protein;(source:Araport11)
AT2G40670.2	protein_coding	response regulator 16	response regulator 16	response regulator 16;(source:Araport11)
AT2G41100.4	protein_coding	Calcium-binding EF hand family protein	encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers. The mRNA is cell-to-cell mobile.	Calcium-binding EF hand family protein;(source:Araport11)
AT2G41110.2	protein_coding	calmodulin 2	Encodes a touch-inducible calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. The mRNA is cell-to-cell mobile.	calmodulin 2;(source:Araport11)
AT2G41231.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G41231.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G41430.5	protein_coding	dehydration-induced protein (ERD15)	Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a  CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.	dehydration-induced protein (ERD15);(source:Araport11)
AT2G41640.2	protein_coding	Glycosyltransferase family 61 protein		Glycosyltransferase family 61 protein;(source:Araport11)
AT2G41710.3	protein_coding	Integrase-type DNA-binding superfamily protein		Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G42000.2	protein_coding	Plant EC metallothionein-like protein, family 15	AtMT4a is a member of Type 4 metallothionein (MT) genes. It is involved in the early develoment of the embryo and in the accumulation of metal ions especially Zn in the seeds.	plant EC metallothionein family protein;(source:Araport11)
AT2G42500.3	protein_coding	protein phosphatase 2A-3	Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].  ACR4 phosphorylates the PROTEIN PHOSPHATASE 2A-3 (PP2A-3) catalytic subunit of the PP2A phosphatase holoenzyme and PP2A dephosphorylates ACR4.	protein phosphatase 2A-3;(source:Araport11)
AT2G42540.3	protein_coding	cold-regulated 15a	A cold-regulated gene whose product is targeted to the chloroplast. Cor15am  protects stromal proteins from aggregation under various stress conditions. Constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.  Late Embryogenesis abundant protein (LEA). Protects chloroplast membranes during freezing.	cold-regulated 15a;(source:Araport11)
AT2G42700.2	protein_coding		Member of MAG2 complex on the ER that is responsible for efficient transport of seed storage proteins, functions in protein transport between the ER and Golgi apparatus Sec1 domain, involved in the development of vegetative organs. Required for proper maturation of seed storage proteins.	vesicle docking protein;(source:Araport11)
AT2G42780.2	protein_coding			transcription elongation factor B polypeptide;(source:Araport11)
AT2G43090.2	protein_coding	Aconitase/3-isopropylmalate dehydratase protein	One of three genes encoding the small subunit of isopropylmalate isomerase, a heterodimer consisting of a large and a small subunit.  A function in both leucine biosynthesis and the first cycle of Met chain elongation has been demonstrated for this subunit. The mRNA is cell-to-cell mobile.	Aconitase/3-isopropylmalate dehydratase protein;(source:Araport11)
AT2G43140.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	bHLH129 is a nuclear localized basic helix loop helix protein. It has been shown to function as a transcriptional repressor. Overexpression of bHLH129 regulates root elongation and ABA response.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G43190.4	protein_coding	ribonuclease P family protein	Encodes a protein involved in rRNA but not tRNA maturation.	ribonuclease P family protein;(source:Araport11)
AT2G43230.2	protein_coding	Protein kinase superfamily protein	Member of cytosolic ABA receptor kinases; interacts with ABA receptors RCAR11-14. Positively regulates germination, seedling architecture and root growth in response to ABA.	Protein kinase superfamily protein;(source:Araport11)
AT2G43270.2	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT2G43350.2	protein_coding	glutathione peroxidase 3	Glutathione peroxidase. Functions as both a redox transducer and a scavenger in abscisic acid and drought stress responses. Interacts with ABI2 and ABI1.	glutathione peroxidase 3;(source:Araport11)
AT2G43490.6	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G43640.3	protein_coding	Signal recognition particle, SRP9/SRP14 subunit		Signal recognition particle, SRP9/SRP14 subunit;(source:Araport11)
AT2G43750.2	protein_coding	O-acetylserine (thiol) lyase B	Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasB, the key enzyme for fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Required for pollen tube growth and/or fertilization.	O-acetylserine (thiol) lyase B;(source:Araport11)
AT2G44890.2	protein_coding	cytochrome P450, family 704, subfamily A, polypeptide 1	member of CYP704A	cytochrome P450, family 704, subfamily A, polypeptide 1;(source:Araport11)
AT2G45023.2	other_rna			other_RNA;(source:Araport11)
AT2G45200.2	protein_coding	golgi snare 12	Encodes a member of the GOS1 (Golgi SNARE) gene family.	golgi snare 12;(source:Araport11)
AT2G45280.2	protein_coding	RAS associated with diabetes protein 51C	Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay.  Required for female meiosis but not critical for mitosis under normal conditions.	RAS associated with diabetes protein 51C;(source:Araport11)
AT2G45460.2	protein_coding	SMAD/FHA domain-containing protein 		SMAD/FHA domain-containing protein;(source:Araport11)
AT2G45460.3	protein_coding	SMAD/FHA domain-containing protein 		SMAD/FHA domain-containing protein;(source:Araport11)
AT2G45540.2	protein_coding	WD-40 repeat family protein / beige-related		WD-40 repeat family protein / beige-like protein;(source:Araport11)
AT2G45640.2	protein_coding	SIN3 associated polypeptide P18	Involved in the regulation of salt  stress. Expression of  AtSAP18 is induced by NaCl, cold, drought,  ABA, and ethylene treatment. AtSAP18 and HDA19 associate with  ERF3 and ERF4 both in vitro and in vivo.	SIN3 associated polypeptide P18;(source:Araport11)
AT2G46070.2	protein_coding	mitogen-activated protein kinase 12	Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants.	mitogen-activated protein kinase 12;(source:Araport11)
AT2G46225.3	protein_coding	ABI-1-like 1	Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching.  One of four ABI-like proteins.	ABI-1-like 1;(source:Araport11)
AT2G46370.4	protein_coding	Auxin-responsive GH3 family protein	Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.	Auxin-responsive GH3 family protein;(source:Araport11)
AT2G46450.2	protein_coding	cyclic nucleotide-gated channel 12	Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.	cyclic nucleotide-gated channel 12;(source:Araport11)
AT2G46450.3	protein_coding	cyclic nucleotide-gated channel 12	Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.	cyclic nucleotide-gated channel 12;(source:Araport11)
AT2G46493.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G46494.1	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT2G46500.3	protein_coding	phosphoinositide 4-kinase gamma 4	Phosphoinositide  kinase which undergo autophosphorylation and phosphorylate serine/threonine  residues of protein substrates. Contains phosphoinositide 3/4-kinase and ubiquitin-like domains. Phosphorylates PUFD1 and RPN10 in vitro.	phosphoinositide 4-kinase gamma 4;(source:Araport11)
AT2G46550.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G46640.3	protein_coding		Encodes TAC1 (Tiller Angle Control 1). Influences axillary branch growth angle. Inflorescence stems of TAC1 mutants are vertically oriented and have axillary shoots with narrow branch angles.	NAD-dependent protein deacetylase HST1-like protein;(source:Araport11)
AT2G46980.3	protein_coding		Encodes ASY3, a coiled-coil domain protein that is required for normal meiosis.	asynaptic protein;(source:Araport11)
AT2G47060.5	protein_coding	Protein kinase superfamily protein	Encodes Pto-interacting 1-4 (PTI1-4), a member of the PTI1-like serine/threonine protein kinases that share strong sequence identity to the tomato PTI1 kinase.	Protein kinase superfamily protein;(source:Araport11)
AT2G47090.2	protein_coding	zinc ion binding;nucleic acid binding		zinc ion binding/nucleic acid binding protein;(source:Araport11)
AT2G47110.2	protein_coding	ubiquitin 6	polyubiquitin gene The mRNA is cell-to-cell mobile.	ubiquitin 6;(source:Araport11)
AT2G47230.2	protein_coding	DOMAIN OF UNKNOWN FUNCTION 724 6	Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins.	agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 6);(source:Araport11)
AT2G47410.2	protein_coding	WD40/YVTN repeat-like-containing domain;Bromodomain		WD40 domain-containing protein;(source:Araport11)
AT2G47650.2	protein_coding	UDP-xylose synthase 4	encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.	UDP-xylose synthase 4;(source:Araport11)
AT2G47820.2	protein_coding			arginine-glutamic acid dipeptide repeat protein;(source:Araport11)
AT2G47860.3	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT2G47900.3	protein_coding	tubby like protein 3	Member of plant TLP family which differs in having an F box domain. Plasma membrane tethering is mediated by PIP2 binding domain. Under abiotic stress TLP3 detaches from the PM and translocates to the nucleus. Mutants are insensitive to ABA.	tubby like protein 3;(source:Araport11)
AT2G48070.3	protein_coding	resistance to phytophthora 1	Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1).  Involved in immune response to Phytophthora brassicae.  rph1 mutant plants (in Ws background) are susceptible to P. brassicae.	resistance to phytophthora 1;(source:Araport11)
AT2G48121.1	protein_coding			ribonuclease III family protein;(source:Araport11)
AT2G48121.2	protein_coding			ribonuclease III family protein;(source:Araport11)
AT2G48140.2	protein_coding	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G01320.2	protein_coding	SIN3-like 1	Encodes SIN3-like 1, a homolog of the transcriptional repressor SIN3 (AT1G24190).	SIN3-like 1;(source:Araport11)
AT3G01810.3	protein_coding			EEIG1/EHBP1 protein amino-terminal domain protein;(source:Araport11)
AT3G02370.2	protein_coding			tRNA-splicing endonuclease subunit;(source:Araport11)
AT3G02390.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G02540.3	protein_coding	Rad23 UV excision repair protein family	Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.	Rad23 UV excision repair protein family;(source:Araport11)
AT3G02645.1	protein_coding	Plant protein of unknown function (DUF247)		transmembrane protein, putative (DUF247);(source:Araport11)
AT3G02832.1	other_rna			other_RNA;(source:Araport11)
AT3G02900.2	protein_coding			Low-density receptor-like protein;(source:Araport11)
AT3G02920.2	protein_coding	Replication protein A, subunit RPA32		Replication protein A, subunit RPA32;(source:Araport11)
AT3G02930.2	protein_coding	Plant protein of unknown function (DUF827)	Encodes a microtubule-associated protein.	weak chloroplast movement under blue light protein (DUF827);(source:Araport11)
AT3G03300.3	protein_coding	dicer-like 2	Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants.  Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.	dicer-like 2;(source:Araport11)
AT3G03350.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G03370.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G03770.2	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G03790.3	protein_coding	ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein		ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G04150.2	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT3G04160.2	protein_coding			U11/U12 small nuclear ribonucleoprotein;(source:Araport11)
AT3G04400.2	protein_coding	Ribosomal protein L14p/L23e family protein		Ribosomal protein L14p/L23e family protein;(source:Araport11)
AT3G04450.2	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G04520.2	protein_coding	threonine aldolase 2	Encodes a threonine aldolase, involved in threonine degradation to glycine. Expressed in vascular tissue through out the plant.	threonine aldolase 2;(source:Araport11)
AT3G04710.3	protein_coding	ankyrin repeat family protein	Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	ankyrin repeat family protein;(source:Araport11)
AT3G04930.2	protein_coding	DNA-binding storekeeper protein-related transcriptional regulator		DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT3G04960.4	protein_coding	Domain of unknown function (DUF3444)		trichohyalin, putative (DUF3444);(source:Araport11)
AT3G05165.5	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G05380.4	protein_coding	DIRP ;Myb-like DNA-binding domain		ALWAYS EARLY 2;(source:Araport11)
AT3G05380.5	protein_coding	DIRP ;Myb-like DNA-binding domain		ALWAYS EARLY 2;(source:Araport11)
AT3G05400.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT3G05480.3	protein_coding	cell cycle checkpoint control protein family	Involved in the regulation of DNA damage repair and homologous recombination.	cell cycle checkpoint control protein family;(source:Araport11)
AT3G05680.2	protein_coding	embryo defective 2016	Encodes a splicing/methylation factor that is a homologue to the mammalian VIRILIZER, is member of a core set of mRNA m6A writer proteins and is required for N6-adenosine methylation of mRNA. Analysis of transcriptional profiles of the vir-1 mutant suggests that VIR is likely involved in regulation of gene expression, but the function of VIR is rather general than specific and knock-down of VIR does not affect overall splicing rates.	embryo defective 2016;(source:Araport11)
AT3G05760.2	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT3G05830.2	protein_coding		Encodes alpha-helical IF (intermediate filament)-like protein.NEAP1 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.	spindle pole body component-like protein;(source:Araport11)
AT3G05870.2	protein_coding	anaphase-promoting complex/cyclosome 11	Subunit of the anaphase promoting complex, a ubiquitin ligase complex that regulates progression through the cell cycle.	anaphase-promoting complex/cyclosome 11;(source:Araport11)
AT3G05910.2	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT3G06110.3	protein_coding	MAPK phosphatase 2	Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.	MAPK phosphatase 2;(source:Araport11)
AT3G06130.2	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G06160.2	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G06310.3	protein_coding	Cox19-like CHCH family protein		Cox19-like CHCH family protein;(source:Araport11)
AT3G06340.3	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT3G06400.2	protein_coding	chromatin-remodeling protein 11	Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. Double mutation in CHR17 and CHR11 results in the loss of the evenly spaced nucleosome pattern in gene bodies, but does not affect nucleosome density.	chromatin-remodeling protein 11;(source:Araport11)
AT3G06400.3	protein_coding	chromatin-remodeling protein 11	Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. Double mutation in CHR17 and CHR11 results in the loss of the evenly spaced nucleosome pattern in gene bodies, but does not affect nucleosome density.	chromatin-remodeling protein 11;(source:Araport11)
AT3G06530.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G06530.3	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G06670.2	protein_coding	binding	SMEK1 forms a catalytically active complex with  PP4 proteins. The complex has been shown to target and dephosphorylate HYL1 which in turn promotes miRNA biogenesis. Mutants have pleiotrophic phenotypes and decreased production of miRNA. SMEK1 accumulation is responsive to ABA.	binding protein;(source:Araport11)
AT3G06680.3	protein_coding	Ribosomal L29e protein family		Ribosomal L29e protein family;(source:Araport11)
AT3G06880.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G07180.3	protein_coding	GPI transamidase component PIG-S-related		GPI transamidase component PIG-S-like protein;(source:Araport11)
AT3G07215.4	other_rna			other_RNA;(source:Araport11)
AT3G07565.4	protein_coding	Protein of unknown function (DUF3755)		histone H2A deubiquitinase (DUF3755);(source:Araport11)
AT3G07580.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G07590.2	protein_coding	Small nuclear ribonucleoprotein family protein	SmD1a is one of two Yeast SmD1 orthologs, lower levels than SmD1b.It is localized to the nucleus and may play a minor role in RNA splicing and indirectly facilitating PTGS.	Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT3G07610.3	protein_coding	Transcription factor jumonji (jmjC) domain-containing protein	IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or the CMT3 non CG-cytosine methylase.	Transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT3G07700.3	protein_coding	Protein kinase superfamily protein	ABC1K7 is a member of an atypical protein kinase family that is induced by salt stress. Loss of function mutations affect the metabolic profile of chloroplast lipids. It appears to function along with ABC1K8 in mediating lipid membrane changes in response to stress.	Protein kinase superfamily protein;(source:Araport11)
AT3G07740.4	protein_coding	homolog of yeast ADA2 2A	encodes a transcriptional adaptor ADA2a that interacts with histone acetyltransferase GCN5 homolog and CBF1	ADA2 2A;(source:Araport11)
AT3G08690.2	protein_coding	ubiquitin-conjugating enzyme 11		ubiquitin-conjugating enzyme 11;(source:Araport11)
AT3G08770.2	protein_coding	lipid transfer protein 6	Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the lipid transfer protein (PR-14) family with the following members:   At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	lipid transfer protein 6;(source:Araport11)
AT3G08990.2	protein_coding	Yippee family putative zinc-binding protein		Yippee family putative zinc-binding protein;(source:Araport11)
AT3G09090.3	protein_coding	defective in exine formation protein (DEX1)	Encodes DEX1 (defective in exine formation).  Required for exine pattern formation during pollen development.	defective in exine formation protein (DEX1);(source:Araport11)
AT3G09250.2	protein_coding	Nuclear transport factor 2 (NTF2) family protein		Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT3G09285.1	miRNA_primary_transcript			microRNA ath-MIR2111a precursor;(source:Araport11)
AT3G09400.2	protein_coding	pol-like 3	Similar to POLTERGEIST (POL) protein phosphatase 2C. No phenotype observed in plants homozygous for a null allele. Ubiquitously expressed.	pol-like 3;(source:Araport11)
AT3G09440.2	protein_coding	Heat shock protein 70 (Hsp 70) family protein		Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT3G09710.2	protein_coding	IQ-domain 1	Ca(2+)-dependent calmodulin-binding protein. Targeted to the nucleus. Involved in glucosinolate metabolism in response to biotic challenge. Expressed in vascular tissue.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 1;(source:Araport11)
AT3G09730.2	protein_coding			POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein;(source:Araport11)
AT3G09910.2	protein_coding	RAB GTPase homolog C2B		RAB GTPase homolog C2B;(source:Araport11)
AT3G09910.3	protein_coding	RAB GTPase homolog C2B		RAB GTPase homolog C2B;(source:Araport11)
AT3G09920.3	protein_coding	phosphatidyl inositol monophosphate 5 kinase		phosphatidyl inositol monophosphate 5 kinase;(source:Araport11)
AT3G10000.2	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT3G10300.5	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G10350.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	One of 3 GET paralogs in Arabidopsis. GET3b is a chloroplast localized protein with no obvious role in Tail Anchored (TA) protein insertion.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G10820.2	protein_coding	Transcription elongation factor (TFIIS) family protein		Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT3G10915.6	protein_coding	Reticulon family protein		Reticulon family protein;(source:Araport11)
AT3G11180.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	One of 4 paralogs encoding a 2-oxoglutarate/Fe(II)-dependent oxygenases  that hydroxylates JA to 12-OH-JA.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G11270.2	protein_coding	Mov34/MPN/PAD-1 family protein		Mov34/MPN/PAD-1 family protein;(source:Araport11)
AT3G11415.1	other_rna			other_RNA;(source:Araport11)
AT3G11773.2	protein_coding	Thioredoxin superfamily protein		Thioredoxin superfamily protein;(source:Araport11)
AT3G11780.2	protein_coding	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein		MD-2-related lipid recognition domain-containing protein / ML domain-containing protein;(source:Araport11)
AT3G11830.2	protein_coding	TCP-1/cpn60 chaperonin family protein		TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT3G11910.2	protein_coding	ubiquitin-specific protease 13		ubiquitin-specific protease 13;(source:Araport11)
AT3G11950.2	protein_coding	TRAF-like superfamily protein	publications Tian et al (2007) and Sadre et al (2006) refer to At3g11950. The prenyltransferase gene studied is actually At3g11945 which arises from a split of the previous At3g11950 gene model.	TRAF-like superfamily protein;(source:Araport11)
AT3G12020.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G12200.2	protein_coding	NIMA-related kinase 7	Encodes AtNek7, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 7;(source:Araport11)
AT3G12280.2	protein_coding	retinoblastoma-related 1	Encodes a retinoblastoma homologue RETINOBLASTOMA-RELATED protein (RBR or RBR1). RBR controls nuclear proliferation in the female gametophyte.  Also required for correct differentiation of male gametophytic cell types.  Regulates stem cell maintenance in Arabidopsis roots. Involved in the determination of cell cycle arrest in G1 phase after sucrose starvation. RBR1 is also involved in regulation of imprinted genes. Together with MSI1 it represses the expression of MET1. This in turn activates expression of the imprinted genes FIS2 and FWA. Functions as a positive regulator of the developmental switch from embryonic heterotrophic growth to autotrophic growth.ChIP studies indicate that one class of targets of RBR1 are transposable elements.	retinoblastoma-related 1;(source:Araport11)
AT3G12350.2	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G12380.2	protein_coding	actin-related protein 5	Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family.	actin-related protein 5;(source:Araport11)
AT3G12520.2	protein_coding	sulfate transporter 4;2	Encodes a sulfate transporter that in induced under sulfate limitation.	sulfate transporter 4;(source:Araport11)
AT3G12550.2	protein_coding	XH/XS domain-containing protein	Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).	XH/XS domain-containing protein;(source:Araport11)
AT3G12915.2	protein_coding	Ribosomal protein S5/Elongation factor G/III/V family protein		Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT3G12990.3	protein_coding	ribonuclease PH45A	Encodes a 3'-5' exoribonuclease, partially redundant with CER7. Involved in epicuticular wax biosynthesis.	ribonuclease PH45A;(source:Araport11)
AT3G13120.2	protein_coding	Ribosomal protein S10p/S20e family protein		Ribosomal protein S10p/S20e family protein;(source:Araport11)
AT3G13235.2	protein_coding	ubiquitin family protein		ubiquitin family protein;(source:Araport11)
AT3G13235.3	protein_coding	ubiquitin family protein		ubiquitin family protein;(source:Araport11)
AT3G13340.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G13430.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G13740.2	protein_coding	Ribonuclease III family protein	Encodes one of two chloroplast Mini-RNase III-like enzymes in Arabidopsis.  Double mutants display imprecise maturation of 23S rRNA and other rRNAs.	Ribonuclease III family protein;(source:Araport11)
AT3G13790.2	protein_coding	Glycosyl hydrolases family 32 protein	Encodes a protein with invertase activity.	Glycosyl hydrolases family 32 protein;(source:Araport11)
AT3G13810.2	protein_coding	indeterminate(ID)-domain 11		indeterminate(ID)-domain 11;(source:Araport11)
AT3G13810.3	protein_coding	indeterminate(ID)-domain 11		indeterminate(ID)-domain 11;(source:Araport11)
AT3G13898.1	protein_coding			EPIDERMAL PATTERNING FACTOR-like protein;(source:Araport11)
AT3G13920.4	protein_coding	eukaryotic translation initiation factor 4A1	eukaryotic translation initiation factor 4A-1	eukaryotic translation initiation factor 4A1;(source:Araport11)
AT3G14010.4	protein_coding	CTC-interacting domain 4	hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2.	CTC-interacting domain 4;(source:Araport11)
AT3G14075.2	protein_coding	Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3		Mono-/di-acylglycerol lipase, N-terminal;(source:Araport11)
AT3G14110.3	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis.  Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G14120.3	protein_coding			nuclear pore complex protein;(source:Araport11)
AT3G14172.2	protein_coding			GPI-anchored adhesin-like protein;(source:Araport11)
AT3G14415.2	protein_coding	Aldolase-type TIM barrel family protein	Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance. The mRNA is cell-to-cell mobile.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G14415.3	protein_coding	Aldolase-type TIM barrel family protein	Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance. The mRNA is cell-to-cell mobile.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G14570.2	protein_coding	glucan synthase-like 4	encodes a protein similar to callose synthase	glucan synthase-like 4;(source:Araport11)
AT3G14590.3	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein	Ca2+-dependent lipid-binding protein	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G14810.2	protein_coding	mechanosensitive channel of small conductance-like 5		mechanosensitive channel of small conductance-like 5;(source:Araport11)
AT3G15030.3	protein_coding	TCP family transcription factor 4	Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.	TCP family transcription factor 4;(source:Araport11)
AT3G15070.2	protein_coding	RING/U-box superfamily protein	Encodes a RING-type E3 ligase that positively regulates CIN-like TCP activity to promote leaf development by mediating the degradation of the TCP repressor TIE1.	RING/U-box superfamily protein;(source:Araport11)
AT3G15180.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G15353.2	protein_coding	metallothionein 3	metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage	metallothionein 3;(source:Araport11)
AT3G15390.2	protein_coding	silencing defective 5	Encodes a novel protein that is similar to PRL1 interacting factor and is involved in virus induced silencing.	silencing defective 5;(source:Araport11)
AT3G15410.2	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G15605.4	protein_coding	nucleic acid binding		nucleic acid binding protein;(source:Araport11)
AT3G15650.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G15840.5	protein_coding	post-illumination chlorophyll fluorescence increase	Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.	post-illumination chlorophyll fluorescence increase;(source:Araport11)
AT3G15880.3	protein_coding	WUS-interacting protein 2		WUS-interacting protein 2;(source:Araport11)
AT3G15940.2	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G15980.4	protein_coding	Coatomer, beta' subunit		Coatomer, beta subunit;(source:Araport11)
AT3G15980.5	protein_coding	Coatomer, beta' subunit		Coatomer, beta subunit;(source:Araport11)
AT3G16230.2	protein_coding	Predicted eukaryotic LigT		Putative eukaryotic LigT;(source:Araport11)
AT3G16230.3	protein_coding	Predicted eukaryotic LigT		Putative eukaryotic LigT;(source:Araport11)
AT3G16340.2	protein_coding	pleiotropic drug resistance 1	Encodes a p-coumaryl alcohol exporter involved in lignin biosynthesis.	pleiotropic drug resistance 1;(source:Araport11)
AT3G16360.2	protein_coding	HPT phosphotransmitter 4	Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	HPT phosphotransmitter 4;(source:Araport11)
AT3G16470.3	protein_coding	Mannose-binding lectin superfamily protein	Encodes a JA-responsive gene that coordinates with GRP7 in shaping plant development through the regulation of RNA processing in Arabidopsis. AtJAC1 interacts with RNA binding protein GRP7 specifically in the cytoplasm to regulate its nucleocytoplasmic distribution.	Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G17040.2	protein_coding	high chlorophyll fluorescent 107	It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. It binds in the psbT?psbH intercistronic region and blocks the progression of 5&#8242; &#8594; 3&#8242; exoribonucleases, which defines the 5&#8242; end of processed psbH transcripts and also stabilizes the downstream RNA segment. In addition, HCF107 binding remodels the structure of the psbH 5&#8242; UTR in a way that can account for its ability to enhance psbH translation.	high chlorophyll fluorescent 107;(source:Araport11)
AT3G17205.3	protein_coding	ubiquitin protein ligase 6		ubiquitin protein ligase 6;(source:Araport11)
AT3G17340.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G17365.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G17590.2	protein_coding	transcription regulatory protein SNF5, putative (BSH)	Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes.	transcription regulatory protein SNF5, putative (BSH);(source:Araport11)
AT3G17670.2	protein_coding	tetratricopeptide repeat (TPR)-containing protein		tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G17712.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G17712.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G18100.3	protein_coding	myb domain protein 4r1	Member of the R2R3 transcription factor gene family.	myb domain protein 4r1;(source:Araport11)
AT3G18380.3	protein_coding	sequence-specific DNA binding transcription factors;sequence-specific DNA binding		DNA-BINDING TRANSCRIPTION FACTOR 2;(source:Araport11)
AT3G18430.2	protein_coding	Calcium-binding EF-hand family protein		Calcium-binding EF-hand family protein;(source:Araport11)
AT3G18500.3	protein_coding	DNAse I-like superfamily protein	Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT3G18660.3	protein_coding	plant glycogenin-like starch initiation protein 1	Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.  Encodes a glucuronyltransferase responsible for the addition of GlcA residues onto xylan and for secondary wall deposition.	plant glycogenin-like starch initiation protein 1;(source:Araport11)
AT3G18750.3	protein_coding	with no lysine (K) kinase 6	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 6;(source:Araport11)
AT3G18900.2	protein_coding			ternary complex factor MIP1 leucine-zipper protein;(source:Araport11)
AT3G18900.3	protein_coding			ternary complex factor MIP1 leucine-zipper protein;(source:Araport11)
AT3G19010.3	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G19170.2	protein_coding	presequence protease 1	Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowers	presequence protease 1;(source:Araport11)
AT3G19210.2	protein_coding	homolog of RAD54	Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases.  Functions in DNA repair via homologous recombination.	DNA repair/recombination protein;(source:Araport11)
AT3G19290.3	protein_coding	ABRE binding factor 4	bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediates ABA-dependent stress responses.ABF4 acts through SnRK2 pathway and binds to ABA response elements of the promoters of NYE1 and regulates their expression to promote chlorophyll degradation.	ABRE binding factor 4;(source:Araport11)
AT3G19720.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP-ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G19780.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G19820.3	protein_coding	cell elongation protein / DWARF1 / DIMINUTO (DIM)	Involved in the conversion of the early brassinosteroid precursor  24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype.  DWF1 is a Ca2+-dependent calmodulin-binding protein.	cell elongation protein / DWARF1 / DIMINUTO (DIM);(source:Araport11)
AT3G20270.3	protein_coding	lipid-binding serum glycoprotein family protein	Encodes one of the two LBP/BPI related proteins (AT1G04970/LBR-1, AT3G20270/LBR-2) that bind to LPS directly and regulate PR1 expression.	lipid-binding serum glycoprotein family protein;(source:Araport11)
AT3G20440.3	protein_coding	Alpha amylase family protein	Encodes BE1, a putative glycoside hydrolase. Involved in organogenesis and somatic embryogenesis by regulating carbohydrate metabolism. Mutation in BE1 has pleotrophic effect on the whole plant development.	Alpha amylase family protein;(source:Araport11)
AT3G20480.2	protein_coding	tetraacyldisaccharide 4'-kinase family protein		tetraacyldisaccharide 4-kinase family protein;(source:Araport11)
AT3G20540.2	protein_coding	polymerase gamma 1	Encodes an organellar DNA polymerase I that is also involved in double strand break repair.	polymerase gamma 1;(source:Araport11)
AT3G20720.2	protein_coding			amino-terminal region of chorein;(source:Araport11)
AT3G21250.2	protein_coding	multidrug resistance-associated protein 6	member of MRP subfamily	multidrug resistance-associated protein 6;(source:Araport11)
AT3G21351.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G22190.2	protein_coding	IQ-domain 5	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 5;(source:Araport11)
AT3G22200.2	protein_coding	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT3G22260.3	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G22350.2	protein_coding	F-box and associated interaction domains-containing protein		F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G22690.2	protein_coding		YS1 is a PPR protein involved in RNA editing of plastid encoded genes. Natural variation in this locus is associated with increased photosynthetic acclimation.	LOW protein: PPR containing-like protein;(source:Araport11)
AT3G22950.2	protein_coding	ADP-ribosylation factor C1	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor GB:P91924 (Dugesia japonica), other ARFs and ARF-like proteins.	ADP-ribosylation factor C1;(source:Araport11)
AT3G23090.2	protein_coding	TPX2 (targeting protein for Xklp2) protein family	Member of the microtubule regulatory protein WVD2/WDL family WDL3 stabilizes cortical microtubules and  is involved in light induced hypocotyl elongation. WDL3 is ubiquinated by COP1, leading to its degadation in the dark,	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT3G23255.2	protein_coding			tRNA dimethylallyltransferase;(source:Araport11)
AT3G23480.2	protein_coding	Cyclopropane-fatty-acyl-phospholipid synthase		Cyclopropane-fatty-acyl-phospholipid synthase;(source:Araport11)
AT3G23610.3	protein_coding	dual specificity protein phosphatase 1	Encodes a dual specificity protein phosphatase whose activity is modulated by CaM binding.	dual specificity protein phosphatase 1;(source:Araport11)
AT3G23660.2	protein_coding	Sec23/Sec24 protein transport family protein		Sec23/Sec24 protein transport family protein;(source:Araport11)
AT3G23780.2	protein_coding	nuclear RNA polymerase D2A	This gene encodes the second largest, catalytic subunit of the nuclear DNA-dependent RNA polymerase IV (aka RNA polymerase D). The NRPD2 protein is found at nuclear foci that overlap or are adjacent to chromocentromeres but are not fully coincident with chromocentromeres. The loss of NRPD2 leads to the loss of cytosine methylation at pericentromeric 5S genes and AtSN1 retroelements but has no discernible effect on centromere repeat methylation. This suggests that Pol IV primarily affects facultative heterochromatin rather than constitutive heterochromatin.	nuclear RNA polymerase D2A;(source:Araport11)
AT3G23900.3	protein_coding	RNA recognition motif (RRM)-containing protein		RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT3G23940.2	protein_coding	dehydratase family	Encodes a member of the dihydroxyacid dehydrates family of proteins that encode enzymes involved in branched chain amino acid biosynthesis. Loss of function mutations have significantly reduced transmission and fertility due to defects in male and female gametophyte development and embryo lethality. Mutants have increased sensitivity to abiotic stressors which may be partially compensated by addition of amino acids to the growth medium.	dehydratase family;(source:Araport11)
AT3G23955.2	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT3G24350.2	protein_coding	syntaxin of plants  32	member of Glycoside Hydrolase Family 17	syntaxin of plants 32;(source:Araport11)
AT3G24500.2	protein_coding	multiprotein bridging factor 1C	One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator.  May serve as a bridging factor between a bZIP factor and TBP.  Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid.  Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses.	multiprotein bridging factor 1C;(source:Araport11)
AT3G24570.2	protein_coding	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein		Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT3G24870.2	protein_coding	Helicase/SANT-associated, DNA binding protein		Helicase/SANT-associated, DNA binding protein;(source:Araport11)
AT3G24890.2	protein_coding	vesicle-associated membrane protein 728	member of VAMP72 Gene Family	vesicle-associated membrane protein 728;(source:Araport11)
AT3G24929.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G25090.2	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G25150.2	protein_coding	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT3G25520.2	protein_coding	ribosomal protein L5	Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.	ribosomal protein L5;(source:Araport11)
AT3G25560.3	protein_coding	NSP-interacting kinase 2		NSP-interacting kinase 2;(source:Araport11)
AT3G25570.2	protein_coding	Adenosylmethionine decarboxylase family protein		Adenosylmethionine decarboxylase family protein;(source:Araport11)
AT3G25620.2	protein_coding	ABC-2 type transporter family protein		ABC-2 type transporter family protein;(source:Araport11)
AT3G25690.2	protein_coding	Hydroxyproline-rich glycoprotein family protein	actin binding protein required for normal chloroplast positioning The mRNA is cell-to-cell mobile.	Hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G25690.3	protein_coding	Hydroxyproline-rich glycoprotein family protein	actin binding protein required for normal chloroplast positioning The mRNA is cell-to-cell mobile.	Hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G25820.2	protein_coding	terpene synthase-like sequence-1,8-cineole	Encodes the monoterpene 1,8-cineole synthase, atTPS-Cin. This polypeptide was also shown to synthesize other monoterpenes albeit in minor quantities. The same polypeptide is encoded at two different loci, the result of gene duplication: at3g25820 and at3g25830.	terpene synthase-like sequence-1,8-cineole;(source:Araport11)
AT3G25900.3	protein_coding	Homocysteine S-methyltransferase family protein		Homocysteine S-methyltransferase family protein;(source:Araport11)
AT3G25980.2	protein_coding	DNA-binding HORMA family protein	Encodes MAD2 (MITOTIC ARREST-DEFICIENT 2). May have the spindle assembly checkpoint protein functions conserved from yeast to humans.	DNA-binding HORMA family protein;(source:Araport11)
AT3G26060.2	protein_coding	Thioredoxin superfamily protein	encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus	Thioredoxin superfamily protein;(source:Araport11)
AT3G26085.3	protein_coding	CAAX amino terminal protease family protein		CAAX amino terminal protease family protein;(source:Araport11)
AT3G26440.4	protein_coding	Protein of unknown function (DUF707)		transmembrane protein, putative (DUF707);(source:Araport11)
AT3G26890.6	protein_coding			meiosis chromosome segregation family protein;(source:Araport11)
AT3G26920.2	protein_coding	FBD / Leucine Rich Repeat domains containing protein		FBD / Leucine Rich Repeat domains containing protein;(source:Araport11)
AT3G27070.2	protein_coding	translocase outer membrane 20-1	Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins	translocase outer membrane 20-1;(source:Araport11)
AT3G27260.2	protein_coding	global transcription factor group E8	Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain	global transcription factor group E8;(source:Araport11)
AT3G27325.2	protein_coding	hydrolases, acting on ester bonds		hydrolases, acting on ester bond;(source:Araport11)
AT3G27350.2	protein_coding			transcriptional regulator ATRX-like protein;(source:Araport11)
AT3G27350.3	protein_coding			transcriptional regulator ATRX-like protein;(source:Araport11)
AT3G27430.3	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	Encodes 20S proteasome beta subunit PBB1 (PBB1).	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT3G27480.2	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G27610.2	protein_coding	Nucleotidylyl transferase superfamily protein		Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT3G27930.2	protein_coding		Encodes a novel plant-specific beta-barrel protein that likely plays a role in the transport of metabolites and in leaf senescence.	beta-galactosidase;(source:Araport11)
AT3G28080.3	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G28480.2	protein_coding	Oxoglutarate/iron-dependent oxygenase		Oxoglutarate/iron-dependent oxygenase;(source:Araport11)
AT3G28700.2	protein_coding	Protein of unknown function (DUF185)		NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185);(source:Araport11)
AT3G28715.2	protein_coding	ATPase, V0/A0 complex, subunit C/D		ATPase, V0/A0 complex, subunit C/D;(source:Araport11)
AT3G29100.2	protein_coding	vesicle transport V-snare 13	Encodes a member of the Arabidopsis v-SNARE (vesicle soluble NSF attachment protein receptor) family that has 3 members: VTI11, VTI12, and VTI13.  This gene is not expressed at levels detectable by RT-PCR. However, one EST corresponding to this gene has been isolated.	vesicle transport V-snare 13;(source:Araport11)
AT3G29130.2	protein_coding			kxDL motif protein;(source:Araport11)
AT3G29180.2	protein_coding	Protein of unknown function (DUF1336)		DUF1336 family protein (DUF1336);(source:Araport11)
AT3G29330.2	protein_coding			zinc finger RNA-binding-like protein;(source:Araport11)
AT3G29375.2	protein_coding	XH domain-containing protein		XH domain-containing protein;(source:Araport11)
AT3G30350.2	protein_coding		Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor-like protein;(source:Araport11)
AT3G32920.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G33530.3	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G41762.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G43300.2	protein_coding	HOPM interactor 7	AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein.  AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family.  The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells.  HopM1 mediates the destruction of AtMIN7 via the host proteasome.	HOPM interactor 7;(source:Araport11)
AT3G43440.2	protein_coding	jasmonate-zim-domain protein 11		jasmonate-zim-domain protein 11;(source:Araport11)
AT3G44510.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G44530.2	protein_coding	homolog of histone chaperone HIRA	Encodes a nuclear localized WD-repeat containing protein involved in negative regulation of knox gene expression via epigenetic mechanism of chromatin re-organization. It is a part of the HISTONE REGULATOR complex that deposits histones in a DNA synthesis-independent manner and affects both nucleosome occupancy and the maintenance of transcriptional silencing. Interacts physically and genetically with AS1. Expressed in meristem and leaf primordia. Homozygous mutants are embryo lethal. Phenotype of cosuppressed lines is variable but show effects on leaf development similar to as1/as2.	histone chaperone HIRA-like protein;(source:Araport11)
AT3G44620.2	protein_coding	protein tyrosine phosphatases;protein tyrosine phosphatases		protein-tyrosine phosphatase;(source:Araport11)
AT3G44735.2	protein_coding	PHYTOSULFOKINE 3 PRECURSOR	Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor.	PHYTOSULFOKINE 3 PRECURSOR;(source:Araport11)
AT3G44750.2	protein_coding	histone deacetylase 3	Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots. Involved in development of the vascular tissue of the stem by affecting cell proliferation and differentiation.	histone deacetylase 3;(source:Araport11)
AT3G45240.3	protein_coding	geminivirus rep interacting kinase 1	Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro. Involved in resistance to S. sclerotiorum, fungal sRNA target.	geminivirus rep interacting kinase 1;(source:Araport11)
AT3G45620.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G45750.2	protein_coding	Nucleotidyltransferase family protein		Nucleotidyltransferase family protein;(source:Araport11)
AT3G45760.2	protein_coding	Nucleotidyltransferase family protein		Nucleotidyltransferase family protein;(source:Araport11)
AT3G45850.2	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G46130.4	protein_coding	myb domain protein 48	Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.	myb domain protein 48;(source:Araport11)
AT3G46210.6	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT3G46220.2	protein_coding			E3 UFM1-protein ligase-like protein;(source:Araport11)
AT3G46220.3	protein_coding			E3 UFM1-protein ligase-like protein;(source:Araport11)
AT3G46640.3	protein_coding	Homeodomain-like superfamily protein	Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock.   LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness.  It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. The mRNA is cell-to-cell mobile.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G47010.2	protein_coding	Glycosyl hydrolase family protein		Glycosyl hydrolase family protein;(source:Araport11)
AT3G47040.2	protein_coding	Glycosyl hydrolase family protein		Glycosyl hydrolase family protein;(source:Araport11)
AT3G47160.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G47390.2	protein_coding	cytidine/deoxycytidylate deaminase family protein	Encodes a protein that is believed to function as a pyrimidine reductase involved in riboflavin and FAD biosynthesis. phs1 was identified as a photosensitive mutant that shows reduced growth, chloroplast developmental abnormalities, reduced chlorophyll levels, increased oxidative stress, reduced NADPH/NADP+ ratios, reduced photosystem I electron transport, and reduced photosynthetic protein levels under high light conditions. Many of these abnormal phenotypes likely arise from the reduction in the levels of FAD in the phs1 mutant.	cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT3G47490.3	protein_coding	HNH endonuclease		HNH endonuclease;(source:Araport11)
AT3G47540.2	protein_coding	Chitinase family protein		Chitinase family protein;(source:Araport11)
AT3G47640.2	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes POPEYE (PYE), a bHLH transcription factor regulating response to iron deficiency in Arabidopsis roots.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G47640.3	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes POPEYE (PYE), a bHLH transcription factor regulating response to iron deficiency in Arabidopsis roots.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G48290.2	protein_coding	cytochrome P450, family 71, subfamily A, polypeptide 24	putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 24;(source:Araport11)
AT3G48380.3	protein_coding	Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2		Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2;(source:Araport11)
AT3G48580.2	protein_coding	xyloglucan endotransglucosylase/hydrolase 11		xyloglucan endotransglucosylase/hydrolase 11;(source:Araport11)
AT3G48600.2	protein_coding	SWIB complex BAF60b domain-containing protein		SWIB complex BAF60b domain-containing protein;(source:Araport11)
AT3G48870.2	protein_coding	Clp ATPase	Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma.  May function redundantly with TIC complex  in chloroplast protein import.	Clp ATPase;(source:Araport11)
AT3G49030.2	protein_coding	FBD, F-box and Leucine Rich Repeat domains containing protein		FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT3G49060.2	protein_coding	U-box domain-containing protein kinase family protein		U-box domain-containing protein kinase family protein;(source:Araport11)
AT3G49142.1	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G49260.3	protein_coding	IQ-domain 21		IQ-domain 21;(source:Araport11)
AT3G49400.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G49430.3	protein_coding	SER/ARG-rich protein 34A	Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SER/ARG-rich protein 34A;(source:Araport11)
AT3G49580.2	protein_coding	response to low sulfur 1		response to low sulfur 1;(source:Araport11)
AT3G49590.3	protein_coding	Autophagy-related protein 13		Autophagy-related protein 13;(source:Araport11)
AT3G49900.2	protein_coding	Phototropic-responsive NPH3 family protein		Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G49920.2	protein_coding	voltage dependent anion channel 5	Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.	voltage dependent anion channel 5;(source:Araport11)
AT3G50350.2	protein_coding	Protein of unknown function (DUF1685)		membrane insertase, putative (DUF1685);(source:Araport11)
AT3G50500.2	protein_coding	SNF1-related protein kinase 2.2	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.  Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth.	SNF1-related protein kinase 2.2;(source:Araport11)
AT3G50530.2	protein_coding	CDPK-related kinase	CDPK-related kinase	CDPK-related kinase;(source:Araport11)
AT3G51150.2	protein_coding	ATP binding microtubule motor family protein		ATP binding microtubule motor family protein;(source:Araport11)
AT3G51240.2	protein_coding	flavanone 3-hydroxylase	Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. Not responsive to auxin or ethylene stimulus (qRT-PCR).	flavanone 3-hydroxylase;(source:Araport11)
AT3G51270.2	protein_coding	protein serine/threonine kinases;ATP binding;catalytics		protein serine/threonine kinase;(source:Araport11)
AT3G51290.2	protein_coding	Protein of unknown function (DUF630) ;Protein of unknown function (DUF632)		pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632);(source:Araport11)
AT3G51430.2	protein_coding	Calcium-dependent phosphotriesterase superfamily protein	Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.	Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT3G51490.2	protein_coding	tonoplast monosaccharide transporter3		tonoplast monosaccharide transporter3;(source:Araport11)
AT3G51580.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G51630.2	protein_coding	with no lysine (K) kinase 5	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.	with no lysine (K) kinase 5;(source:Araport11)
AT3G51750.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G51760.3	protein_coding	Protein of unknown function (DUF688)		hypothetical protein (DUF688);(source:Araport11)
AT3G51760.4	protein_coding	Protein of unknown function (DUF688)		hypothetical protein (DUF688);(source:Araport11)
AT3G51800.3	protein_coding	metallopeptidase M24 family protein	putative nuclear DNA-binding protein G2p (AtG2) mRNA,	metallopeptidase M24 family protein;(source:Araport11)
AT3G51830.2	protein_coding	SAC domain-containing protein 8	putative transmembrane protein G5p (AtG5) mRNA, complete. autophagy-related (ATG) gene	SAC domain-containing protein 8;(source:Araport11)
AT3G51880.4	protein_coding	high mobility group B1	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.	high mobility group B1;(source:Araport11)
AT3G52030.2	protein_coding	F-box family protein with WD40/YVTN repeat doamin		F-box family protein with WD40/YVTN repeat doamin;(source:Araport11)
AT3G52090.2	protein_coding	DNA-directed RNA polymerase, RBP11-like	Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit.	DNA-directed RNA polymerase, RBP11-like protein;(source:Araport11)
AT3G52110.2	protein_coding			interferon-activable protein;(source:Araport11)
AT3G52140.2	protein_coding	tetratricopeptide repeat (TPR)-containing protein	Involved in regulating mitochondrial quality control. Regulates mitochondrial association time and thereby is involved in mitochondrial fusion. Mutants show unregulated autophagy and display transcriptomic markers of mitochondrial stress. Its activity can be modulated by Lys acetylation.	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G52140.3	protein_coding	tetratricopeptide repeat (TPR)-containing protein	Involved in regulating mitochondrial quality control. Regulates mitochondrial association time and thereby is involved in mitochondrial fusion. Mutants show unregulated autophagy and display transcriptomic markers of mitochondrial stress. Its activity can be modulated by Lys acetylation.	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G52140.4	protein_coding	tetratricopeptide repeat (TPR)-containing protein	Involved in regulating mitochondrial quality control. Regulates mitochondrial association time and thereby is involved in mitochondrial fusion. Mutants show unregulated autophagy and display transcriptomic markers of mitochondrial stress. Its activity can be modulated by Lys acetylation.	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G52170.2	protein_coding	DNA binding		DNA binding protein;(source:Araport11)
AT3G52200.2	protein_coding	Dihydrolipoamide acetyltransferase, long form protein	Encodes a dihydrolipoamide S-acetyltransferase, a subunit of the mitochondrial pyruvate dehydrogenase complex.	Dihydrolipoamide acetyltransferase, long form protein;(source:Araport11)
AT3G52260.3	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT3G52280.2	protein_coding	general transcription factor group E6	Bromodomain containing nuclear-localized protein involved in leaf development. GTE6 binds to the promoter and intron of AS1 and regulates its expression via histone acetylation.	general transcription factor group E6;(source:Araport11)
AT3G52560.4	protein_coding	ubiquitin E2 variant 1D-4	MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions.  UEV1D-4, a predicted splice variant, can interact relatively weakly with UBC35/UBC13A and UBC36/UBC13B in a yeast-2-hybrid  UEV1D-4 can also significantly, but not totally, functionally complement an mms2 mutation in budding yeast by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays.	ubiquitin E2 variant 1D-4;(source:Araport11)
AT3G52950.2	protein_coding	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein		CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein;(source:Araport11)
AT3G52970.2	protein_coding	cytochrome P450, family 76, subfamily G, polypeptide 1	member of CYP76G	cytochrome P450, family 76, subfamily G, polypeptide 1;(source:Araport11)
AT3G53270.6	protein_coding	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein		Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein;(source:Araport11)
AT3G53370.2	protein_coding	S1FA-like DNA-binding protein		S1FA-like DNA-binding protein;(source:Araport11)
AT3G53460.3	protein_coding	chloroplast RNA-binding protein 29	Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast.	chloroplast RNA-binding protein 29;(source:Araport11)
AT3G53460.4	protein_coding	chloroplast RNA-binding protein 29	Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast.	chloroplast RNA-binding protein 29;(source:Araport11)
AT3G53520.4	protein_coding	UDP-glucuronic acid decarboxylase 1	Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis.  This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate  several cell wall biosynthetic enzymes.	UDP-glucuronic acid decarboxylase 1;(source:Araport11)
AT3G53670.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G53770.2	protein_coding	late embryogenesis abundant 3 (LEA3) family protein		late embryogenesis abundant 3 (LEA3) family protein;(source:Araport11)
AT3G54050.2	protein_coding	high cyclic electron flow 1	Encodes a chloroplastic fructose 1,6-bisphosphate phosphatase also known as HCEF1 (High Cyclic Electron Flow 1). hcef1 mutants have constitutively elevated electron flow (CEFI) and plants with antisense suppression of this enzyme have higher levels of net leaf photosynthesis  and increased sucrose biosynthesis. The mRNA is cell-to-cell mobile.	high cyclic electron flow 1;(source:Araport11)
AT3G54230.2	protein_coding	suppressor of abi3-5	Encodes a splicing factor SUA (suppressor of abi3-5), homologous to the human protein RBM5.  Controls alternative splicing of the developmental regulator ABI3.	suppressor of abi3-5;(source:Araport11)
AT3G54280.2	protein_coding	DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases		ROOT GROWTH DEFECTIVE 3;(source:Araport11)
AT3G54380.3	protein_coding	SAC3/GANP/Nin1/mts3/eIF-3 p25 family		SAC3/GANP/Nin1/mts3/eIF-3 p25 family;(source:Araport11)
AT3G54440.3	protein_coding	glycoside hydrolase family 2 protein		glycoside hydrolase family 2 protein;(source:Araport11)
AT3G54500.3	protein_coding		Member of a small family (4 proteins) in Arabidopsis that have some overlap in function. LNK2 along with LNK1  functions in the integration of light signaling and circadian clock. It is regulated by  the clock TOC1 complex. Functions as a transcriptional coactivator.	agglutinin-like protein;(source:Araport11)
AT3G54500.4	protein_coding		Member of a small family (4 proteins) in Arabidopsis that have some overlap in function. LNK2 along with LNK1  functions in the integration of light signaling and circadian clock. It is regulated by  the clock TOC1 complex. Functions as a transcriptional coactivator.	agglutinin-like protein;(source:Araport11)
AT3G54530.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G54620.3	protein_coding	basic leucine zipper 25	bZIP transcription factor-like protein mRNA	basic leucine zipper 25;(source:Araport11)
AT3G54750.3	protein_coding			downstream neighbor of Son;(source:Araport11)
AT3G54760.2	protein_coding	dentin sialophosphoprotein-related		dentin sialophosphoprotein-like protein;(source:Araport11)
AT3G55370.3	protein_coding	OBF-binding protein 3	Encodes a nuclear localized Dof domain containing transcription factor expressed primarily in roots. Responsive to salicylic acid. Transgenic overexpressors have yellow leaves and short, defective roots.	OBF-binding protein 3;(source:Araport11)
AT3G55380.2	protein_coding	ubiquitin-conjugating enzyme 14		ubiquitin-conjugating enzyme 14;(source:Araport11)
AT3G55450.2	protein_coding	PBS1-like 1		PBS1-like 1;(source:Araport11)
AT3G55485.1	other_rna			other_RNA;(source:Araport11)
AT3G55760.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G55770.7	protein_coding	GATA type zinc finger transcription factor family protein	Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT3G56110.2	protein_coding	prenylated RAB acceptor 1.B1		prenylated RAB acceptor 1.B1;(source:Araport11)
AT3G56130.4	protein_coding	biotin/lipoyl attachment domain-containing protein		biotin/lipoyl attachment domain-containing protein;(source:Araport11)
AT3G56150.2	protein_coding	eukaryotic translation initiation factor 3C	member of eIF3c - eukaryotic initiation factor 3c	eukaryotic translation initiation factor 3C;(source:Araport11)
AT3G56210.5	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G56260.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G56600.2	protein_coding	Protein kinase superfamily protein		phosphatidylinositol 4-kinase gamma-like protein;(source:Araport11)
AT3G56720.2	protein_coding			pre-mRNA-splicing factor;(source:Araport11)
AT3G56720.3	protein_coding			pre-mRNA-splicing factor;(source:Araport11)
AT3G56730.2	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G56860.4	protein_coding	UBP1-associated protein 2A	encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.	UBP1-associated protein 2A;(source:Araport11)
AT3G56860.5	protein_coding	UBP1-associated protein 2A	encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.	UBP1-associated protein 2A;(source:Araport11)
AT3G56930.2	protein_coding	DHHC-type zinc finger family protein	Protein S-acyl transferase 4 (PAT4). Mutants display defects in root hair elongation. Along with SCN1 , it may be involved in targeting of ROP2 to the plasma membrane.	DHHC-type zinc finger family protein;(source:Araport11)
AT3G56940.2	protein_coding	dicarboxylate diiron protein, putative (Crd1)	Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots.  Has a consensus carboxylate-bridged di-iron binding site. The mRNA is cell-to-cell mobile.	dicarboxylate diiron protein, putative (Crd1);(source:Araport11)
AT3G56950.2	protein_coding	small and basic intrinsic protein 2;1	One of the Major Intrinsic Proteins(MIPs) which facilitate the passive transport of small molecules across membranes.Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER. Probably involved in the alleviation of ER stress; the lack of SIP2;1 reduces both pollen germination and pollen tube elongation.	small and basic intrinsic protein 2;(source:Araport11)
AT3G57060.2	protein_coding	binding		binding protein;(source:Araport11)
AT3G57062.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G57130.2	protein_coding	Ankyrin repeat family protein / BTB/POZ domain-containing protein	Encodes BOP1.  Contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain. Lines carrying recessive mutations exhibit a number of visible defects, most pronounced being ectopic outgrowths of in leaf petioles of rosette leaves. Along with BOP2, BOP1 is required for nectary development and  formation of normal abscission zones.Forms homodimers and heterodimers with BOP2. Nuclear localization is required for activity which includes positive regulation of AS2 in leaves. BOP1/2 promotes floral meristem fate and determinacy in a pathway targetting APETALA1 and AGAMOUS-LIKE24. PUCHI, BOP1 and BOP2 are redundantly required for expression of LFY and AP1. BOP1 is expressed in valve margin. Misexpression in stems causes short internodes and ectopic biosynthesis of lignin. BOP1 activity is antagonistic to BP (At4g08150) and PNY (At5g02030). BOP1 expression is restricted to pedicel axils by BP and PNY. BOP1 promotes KNAT6 (At1g23380) expression.BOP1 Interacts with BIL1/BZR1 and Inhibits BIL1/BZR1 transport into the nucleus.	Ankyrin repeat family protein / BTB/POZ domain-containing protein;(source:Araport11)
AT3G57300.2	protein_coding	INO80 ortholog	Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family that has been shown to interact with H2A.Z and facilitates the enrichment of H2A.Z at the ends of the flowering repressor genes FLC and MAF4/5.  Functions as a positive regulator of DNA homologous recombination (HR) and plays a crucial role in genome stability maintenance.  In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type.   Plants mutated in INO80 display a pleiotropic phenotype including smaller plant and organ size, and late flowering but are not more sensitive to genotoxic agents or less efficient at T-DNA integration. INO80 has also been shown to regulate a subset of the Arabidopsis transcriptome.	DNA helicase INO80-like protein;(source:Araport11)
AT3G57470.3	protein_coding	Insulinase (Peptidase family M16) family protein		Insulinase (Peptidase family M16) family protein;(source:Araport11)
AT3G57570.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT3G57890.2	protein_coding	Tubulin binding cofactor C domain-containing protein		Tubulin binding cofactor C domain-containing protein;(source:Araport11)
AT3G57940.2	protein_coding	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)		GNAT acetyltransferase (DUF699);(source:Araport11)
AT3G57965.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G57970;(source:Araport11)
AT3G58030.4	protein_coding	RING/U-box superfamily protein	Encodes a RING domain E3 ligase. Has overlapping function with MUSE2 in the negative regulation of defence responses. SIKIC2 (and possibly SIKIC1 and 3) is ubiquination target.	RING/U-box superfamily protein;(source:Araport11)
AT3G58110.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G58290.2	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT3G58290.3	protein_coding	TRAF-like superfamily protein		TRAF-like superfamily protein;(source:Araport11)
AT3G58460.2	protein_coding	RHOMBOID-like protein 15		RHOMBOID-like protein 15;(source:Araport11)
AT3G58610.3	protein_coding	ketol-acid reductoisomerase		ketol-acid reductoisomerase;(source:Araport11)
AT3G58670.3	protein_coding	Protein of unknown function (DUF1637)		2-aminoethanethiol dioxygenase, putative (DUF1637);(source:Araport11)
AT3G58720.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT3G58780.3	protein_coding	K-box region and MADS-box transcription factor family protein 	One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT3G58900.4	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G59068.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G59070;(source:Araport11)
AT3G59210.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G59210.3	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G59210.4	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT3G59410.2	protein_coding	protein kinase family protein	Encodes an eIF2alpha kinase that can bind uncharged tRNA via its C-terminus and can phosphorylate both eIF2alpha homologues in Arabidopsis.	protein kinase family protein;(source:Araport11)
AT3G59470.2	protein_coding	Far-red impaired responsive (FAR1) family protein	Encodes one of four FRS (FAR1-RELATED SEQUENCE) factor-like genes in Arabidopsis.  FRS factors are characterized by having an N-terminal C2H2-type chelating motif of the WRKY- Glial Cell Missing1 family, a central core transposase domain of Mutator-like element transposases, and a C-terminal SWIM domain. The four FRF-like genes in  Arabidopsis share only the N-terminal motif with FRS proteins. FRF1 has been shown to bind the RB-box in vitro.  The RB-box contributes to restricting SHOOTMERISTEMLESS expression to the shoot apical meristem.	Far-red impaired responsive (FAR1) family protein;(source:Araport11)
AT3G59650.2	protein_coding	mitochondrial ribosomal protein L51/S25/CI-B8 family protein		mitochondrial ribosomal protein L51/S25/CI-B8 family protein;(source:Araport11)
AT3G59770.3	protein_coding	sacI homology domain-containing protein / WW domain-containing protein	Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.	sacI homology domain-containing protein / WW domain-containing protein;(source:Araport11)
AT3G59990.4	protein_coding	methionine aminopeptidase 2B	Encodes a MAP2 like methionine aminopeptidase	methionine aminopeptidase 2B;(source:Araport11)
AT3G60300.2	protein_coding	RWD domain-containing protein		RWD domain-containing protein;(source:Araport11)
AT3G60330.2	protein_coding	H(+)-ATPase 7		H[+]-ATPase 7;(source:Araport11)
AT3G60500.3	protein_coding	3'-5'-exoribonuclease family protein	Encodes a 3'-5' exoribonuclease, positively regulates CER3 transcription, involved in cuticular wax biosynthesis.	3-5-exoribonuclease family protein;(source:Araport11)
AT3G60510.3	protein_coding	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT3G60750.2	protein_coding	Transketolase		Transketolase;(source:Araport11)
AT3G60820.3	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	Encodes 20S proteasome beta subunit PBF1 (PBF1).	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT3G61010.2	protein_coding	Ferritin/ribonucleotide reductase-like family protein		Ferritin/ribonucleotide reductase-like family protein;(source:Araport11)
AT3G61028.2	protein_coding	Putative endonuclease or glycosyl hydrolase		Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G61070.3	protein_coding	peroxin 11E	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.	peroxin 11E;(source:Araport11)
AT3G61190.2	protein_coding	BON association protein 1	Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.	BON association protein 1;(source:Araport11)
AT3G61220.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	CytADR/SDR1 is an aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on alpha,beta-unsaturated aldehydes with more than 5 carbons in vitro. It can also act on menthone and neomenthol in vitro, but these do not represent likely endogenous activities of this enzyme in planta. GFP-tagged CytADR appears to localize to the cytosol where it likely plays a role in detoxifying reactive carbonyls. sdr1 mutants have altered responses to pathogens. The mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G61440.3	protein_coding	cysteine synthase C1	Encodes a cysteine synthase isomer CysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an intermediate of cyanide detoxification pathway. The mRNA is cell-to-cell mobile.	cysteine synthase C1;(source:Araport11)
AT3G61450.2	protein_coding	syntaxin of plants 73	syntaxin of plants 73 (SYP73)	syntaxin of plants 73;(source:Araport11)
AT3G61490.3	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT3G61590.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein	F-box protein that is involved in some aspect of regulation of gene silencing by miRNA. Loss of function mutations have increased levels of some miRNAs. Its activity depends on the presence of functional F-box.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G61880.2	protein_coding	cytochrome p450 78a9	Encodes a cytochrome p450 monooxygenase.  Overexpression of this gene allows fruit growth independently of fertilization.  The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis.	cytochrome p450 78a9;(source:Araport11)
AT3G62000.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G62010.2	protein_coding			metal ion-binding protein;(source:Araport11)
AT3G62030.3	protein_coding	rotamase CYP 4	nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	rotamase CYP 4;(source:Araport11)
AT3G62090.3	protein_coding	phytochrome interacting factor 3-like 2	encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.	phytochrome interacting factor 3-like 2;(source:Araport11)
AT3G62290.2	protein_coding	ADP-ribosylation factor A1E	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. The mRNA is cell-to-cell mobile.	ADP-ribosylation factor A1E;(source:Araport11)
AT3G62290.3	protein_coding	ADP-ribosylation factor A1E	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. The mRNA is cell-to-cell mobile.	ADP-ribosylation factor A1E;(source:Araport11)
AT3G62300.2	protein_coding	DOMAIN OF UNKNOWN FUNCTION 724 7	Encodes a protein with Agenet/Tudor and DUF724 domains. It can interact with ABAP1, a negative regulator of DNA replication and transcription, with the plant histone modification 'reader' LHP1, and with non-modified histones. It may act as a link between DNA replication, transcription and chromatin remodeling during flower development. Loss of function mutant has a WT phenotype.	agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7);(source:Araport11)
AT3G62620.3	protein_coding	sucrose-phosphatase-related	Encodes a protein of unknown function. Previously this protein has been annotated computationally as a sucrose-phosphatase-related protein. However, the source of this annotation can not be verified. This annotation (sucrose-phosphatase-related) has been removed.	sucrose-phosphatase-like protein;(source:Araport11)
AT3G62940.3	protein_coding	Cysteine proteinases superfamily protein		Cysteine proteinases superfamily protein;(source:Araport11)
AT3G63130.2	protein_coding	RAN GTPase activating protein 1	Encodes a RAN GTPase activating protein involved in nuclear import, cell plate formation and mitotic spindle formation.	RAN GTPase activating protein 1;(source:Araport11)
AT3G63230.2	protein_coding	Protein of unknown function (DUF581)		senescence-associated-like protein (DUF581);(source:Araport11)
AT3G63340.2	protein_coding	Protein phosphatase 2C family protein		kinase superfamily protein;(source:Araport11)
AT3G63400.3	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G63450.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G63460.3	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G66652.2	protein_coding	fip1 motif-containing protein		fip1 motif-containing protein;(source:Araport11)
AT4G00560.4	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G00590.2	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein		N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT4G00630.2	protein_coding	K+ efflux antiporter 2	Encodes a K(+)/H(+) antiporter that modulates monovalent cation and pH homeostasis in plant chloroplasts or plastids.	K+ efflux antiporter 2;(source:Araport11)
AT4G00695.3	protein_coding			Spc97/Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT4G00830.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a heterogeneous nuclear ribonucleoprotein (hnRNP-Q) that is involved in the plant innate immune response and may function as a suppressor of cell-autonomous immunity.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G00830.4	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a heterogeneous nuclear ribonucleoprotein (hnRNP-Q) that is involved in the plant innate immune response and may function as a suppressor of cell-autonomous immunity.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G01070.2	protein_coding	UDP-Glycosyltransferase superfamily protein	the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this gene for metabolizing chloroaniline but significantly less for chlorophenole. The glucosyltransferase preferred UDP-xylose over UDP-glucose indicating its (additional) functioning as a xylosyltransferase in planta	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G01100.2	protein_coding	adenine nucleotide transporter 1	Adenine nucleotide transporter. Located in mitochondrion. Expressed in a broad range of tissues, but predominantly in root tips. Loss of function mutants exhibit reduced root growth and respiration.	adenine nucleotide transporter 1;(source:Araport11)
AT4G01330.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G01590.3	protein_coding			DNA-directed RNA polymerase III subunit;(source:Araport11)
AT4G01800.2	protein_coding	Albino or Glassy Yellow 1	Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression.	Albino or Glassy Yellow 1;(source:Araport11)
AT4G02005.2	other_rna			None;(source:Araport11)
AT4G02030.2	protein_coding	Vps51/Vps67 family (components of vesicular transport) protein		Vps51/Vps67 family (components of vesicular transport) protein;(source:Araport11)
AT4G02060.2	protein_coding	Minichromosome maintenance (MCM2/3/5) family protein	Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and  endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the  cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.	Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT4G02070.2	protein_coding	MUTS homolog 6	encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.	MUTS homolog 6;(source:Araport11)
AT4G02210.2	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT4G02540.2	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G02550.4	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT4G02560.2	protein_coding	Homeodomain-like superfamily protein	Encodes a nuclear localized protein with similarity to transcriptional regulators. Recessive mutants are late flowering. Expression of LFY is reduced in LD mutants. LD has been reported to exhibit prion like behavior in yeast but it remains to be determined if such activity exists during normal plant development.	Homeodomain-like superfamily protein;(source:Araport11)
AT4G02570.4	protein_coding	cullin 1	Encodes a cullin that is a component of  SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl.  Heterozygotes display a variety of phenotypes consistent with impaired auxin response.	cullin 1;(source:Araport11)
AT4G02760.3	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G02830.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G02840.2	protein_coding	Small nuclear ribonucleoprotein family protein	SmD1b is one of two Yeast SmD1 orthologs, the other being SmD1a.SmD1b accumulates to higher levels than SmD1a.It is localized to the nucleolus and nuclear speckles and appears to have a role in RNA splicing and indirectly facilitating PTGS.	Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT4G02880.2	protein_coding			ELKS/Rab6-interacting/CAST family protein;(source:Araport11)
AT4G03020.2	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G03090.2	protein_coding	sequence-specific DNA binding;sequence-specific DNA binding transcription factors		sequence-specific DNA binding transcription factor ATNDX;(source:Araport11)
AT4G03415.2	protein_coding	Protein phosphatase 2C family protein	Encodes a myristoylated 2C-type protein phosphatase that interacts with AGB1 and is localized to the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT4G03490.2	protein_coding	Ankyrin repeat family protein		Ankyrin repeat family protein;(source:Araport11)
AT4G03610.2	protein_coding	Metallo-hydrolase/oxidoreductase superfamily protein		Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT4G04460.2	protein_coding	Saposin-like aspartyl protease family protein		Saposin-like aspartyl protease family protein;(source:Araport11)
AT4G04740.2	protein_coding	calcium-dependent protein kinase 23	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 23;(source:Araport11)
AT4G04775.1	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT4G04830.2	protein_coding	methionine sulfoxide reductase B5		methionine sulfoxide reductase B5;(source:Araport11)
AT4G04850.2	protein_coding	K+ efflux antiporter 3	Encodes a potassium efflux antiporter; has three splice forms KEA3.1, KEA3.2, and KEA3.3, KEA3.2 is the most abundant splice form in all plant organs (silique, flower, leaf and root).  KEA3.1 and KEA3.3 are minor variants that can be found in flowers and in leaves. KEA3 is localized to the thylakoid membrane and  enriched in the stromal lamellae. It allows proton efflux from the thylakoid lumen by proton/potassium antiport.	K+ efflux antiporter 3;(source:Araport11)
AT4G04920.2	protein_coding	sensitive to freezing 6	Encodes a nuclear targeted protein that plays a role in the CBF pathway -downstream of CBF translation. Mutants have impaired cold responses, reduced levels of cold induced RNA transcripts, are sensitive to osmotic stress. Required for expression of CBF-controlled cold-upregulated genes and some, but not all, other cold up-regulated genes. Required for recruitment of the Mediator complex and RNA polymerase II to CBF-controlled cold-responsive genes. Required for expression of some dark-upregulated genes. SFR6 was isolated as a suppressor of cell wall defects in cob6 mutant background.	sensitive to freezing 6;(source:Araport11)
AT4G04972.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G05020.2	protein_coding	NAD(P)H dehydrogenase B2	Miitochondrial alternative NADH dehydrogenase.	NAD(P)H dehydrogenase B2;(source:Araport11)
AT4G05040.4	protein_coding	ankyrin repeat family protein		ankyrin repeat family protein;(source:Araport11)
AT4G05040.5	protein_coding	ankyrin repeat family protein		ankyrin repeat family protein;(source:Araport11)
AT4G05050.4	protein_coding	ubiquitin 11	polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14.  Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.	ubiquitin 11;(source:Araport11)
AT4G05390.2	protein_coding	root FNR 1	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	root FNR 1;(source:Araport11)
AT4G05475.1	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT4G06634.3	protein_coding	zinc finger (C2H2 type) family protein	Encodes an ABA responsive C2H2-type zinc finger transcription factor with both transcriptional repression and activation domains, that binds a G-rich, 11-bp DNA-binding motif. YY1 binds to the promoter of ABR1 and disruption represses ABA- and salt-induced ABR1 expression.	zinc finger (C2H2 type) family protein;(source:Araport11)
AT4G07670.2	protein_coding	protease-associated (PA) domain-containing protein		protease-associated (PA) domain-containing protein;(source:Araport11)
AT4G07990.2	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G08170.3	protein_coding	Inositol 1,3,4-trisphosphate 5/6-kinase family protein		Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11)
AT4G08230.2	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G08330.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G08390.4	protein_coding	stromal ascorbate peroxidase	Encodes a chloroplastic stromal ascorbate peroxidase sAPX.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. The mRNA is cell-to-cell mobile.	stromal ascorbate peroxidase;(source:Araport11)
AT4G08460.3	protein_coding	Protein of unknown function (DUF1644)		hypothetical protein (DUF1644);(source:Araport11)
AT4G09060.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G09150.2	protein_coding	T-complex protein 11		T-complex protein 11;(source:Araport11)
AT4G09432.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G09430;(source:Araport11)
AT4G09720.4	protein_coding	RAB GTPase homolog G3A		RAB GTPase homolog G3A;(source:Araport11)
AT4G09770.2	protein_coding	TRAF-like family protein		TRAF-like family protein;(source:Araport11)
AT4G09960.4	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes a MADS box transcription factor expressed in the carpel and ovules. Plays a maternal role in fertilization and seed development. Controls the structure and mechanical properties of the seed coat.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT4G10550.3	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G10925.3	protein_coding	Nuclear transport factor 2 (NTF2) family protein		Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT4G10955.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G11040.2	protein_coding	Protein phosphatase 2C family protein	Encodes a nuclear localized protein with sequence similarity to PP2C phosphatases that is involved in seed dormancy. Loss of function mutations have reduced seed dormancy but does not act through ABA or DOG1 pathways. Lacks several conserved key residues and does not possess any appreciable phosphatase activity in in vitro assays. QTL allele with a nonsynonymous amino acid change confers seed dormancy phenotype.	Protein phosphatase 2C family protein;(source:Araport11)
AT4G11380.2	protein_coding	Adaptin family protein		Adaptin family protein;(source:Araport11)
AT4G11960.2	protein_coding	PGR5-like B	Encodes PGRL1B, a transmembrane protein present in thylakoids.  PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).	PGR5-like B;(source:Araport11)
AT4G11970.3	protein_coding	YTH family protein		YTH family protein;(source:Araport11)
AT4G12420.2	protein_coding	Cupredoxin superfamily protein	Encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues.	Cupredoxin superfamily protein;(source:Araport11)
AT4G12600.2	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT4G12690.2	protein_coding	Plant protein of unknown function (DUF868)		DUF868 family protein (DUF868);(source:Araport11)
AT4G12720.4	protein_coding	MutT/nudix family protein	Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.	MutT/nudix family protein;(source:Araport11)
AT4G12770.2	protein_coding	Chaperone DnaJ-domain superfamily protein	Negative regulation of growth and endocytosis, most likely as a result of inhibition of the recruitment of clathrin to endocytic pits.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G12780.2	protein_coding	Chaperone DnaJ-domain superfamily protein	Negative regulation of growth and endocytosis, most likely as a result of inhibition of the recruitment of clathrin to endocytic pits. Overexpression inhbits recruitment of clathrin resulting in negative regulation of endocytosis and developmental arrest.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G12850.3	protein_coding	Far-red impaired responsive (FAR1) family protein	Encodes one of four FRS (FAR1-RELATED SEQUENCE) factor-like genes in Arabidopsis.  FRS factors are characterized by having an N-terminal C2H2-type chelating motif of the WRKY- Glial Cell Missing1 family, a central core transposase domain of Mutator-like element transposases, and a C-terminal SWIM domain. The four FRF-like genes in  Arabidopsis share only the N-terminal motif with FRS proteins.	Far-red impaired responsive (FAR1) family protein;(source:Araport11)
AT4G12880.2	protein_coding	early nodulin-like protein 19		early nodulin-like protein 19;(source:Araport11)
AT4G13020.5	protein_coding	Protein kinase superfamily protein	Encodes a member of the cdc2+ family of protein kinases MHK.  Similar to the mak genes of rats.  mak encodes a protein kinase that may play a role in spermatogenesis.	Protein kinase superfamily protein;(source:Araport11)
AT4G13100.4	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G13100.5	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G13210.2	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G13250.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes a chlorophyll b reductase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II).	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G13570.2	protein_coding	histone H2A 4	Encodes HTA4, a histone H2A protein. The mRNA is cell-to-cell mobile.	histone H2A 4;(source:Araport11)
AT4G13590.2	protein_coding	Uncharacterized protein family (UPF0016)	Chloroplast manganese transporter required for chloroplast manganese homeostasis and photosynthetic function.	Uncharacterized protein family (UPF0016);(source:Araport11)
AT4G13630.2	protein_coding	Protein of unknown function, DUF593		zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT4G13710.2	protein_coding	Pectin lyase-like superfamily protein		Pectin lyase-like superfamily protein;(source:Araport11)
AT4G13730.3	protein_coding	Ypt/Rab-GAP domain of gyp1p superfamily protein		Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT4G13810.2	protein_coding	receptor like protein 47		receptor like protein 47;(source:Araport11)
AT4G13918.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G13920;(source:Araport11)
AT4G14030.2	protein_coding	selenium-binding protein 1		selenium-binding protein 1;(source:Araport11)
AT4G14103.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT4G14140.2	protein_coding	DNA methyltransferase 2	This gene is predicted to encode a DNA methyltransferase. A plant line expressing an RNAi construct directed against DMT2 has reduced agrobacterium-mediated tumor formation.	DNA methyltransferase 2;(source:Araport11)
AT4G14147.2	protein_coding	protein binding	actin-related protein 2/3 complex 34kDa subunit family / arp2/3 complex 34kDa subunit family	binding protein;(source:Araport11)
AT4G14320.2	protein_coding	Zinc-binding ribosomal protein family protein		Zinc-binding ribosomal protein family protein;(source:Araport11)
AT4G14520.3	protein_coding	DNA-directed RNA polymerase II-related		DNA-directed RNA polymerase II-like protein;(source:Araport11)
AT4G14710.5	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT4G14800.2	protein_coding	20S proteasome beta subunit D2	Encodes 20S proteasome beta subunit PBD2 (PBD2).	20S proteasome beta subunit D2;(source:Araport11)
AT4G14880.3	protein_coding	O-acetylserine (thiol) lyase (OAS-TL) isoform A1	Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma.  Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA. Lines carrying semi-dominant mutations exhibit early senescence. Required for pollen tube growth and/or fertilization.	O-acetylserine (thiol) lyase (OAS-TL) isoform A1;(source:Araport11)
AT4G14880.4	protein_coding	O-acetylserine (thiol) lyase (OAS-TL) isoform A1	Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma.  Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA. Lines carrying semi-dominant mutations exhibit early senescence. Required for pollen tube growth and/or fertilization.	O-acetylserine (thiol) lyase (OAS-TL) isoform A1;(source:Araport11)
AT4G14910.3	protein_coding	HISTIDINE BIOSYNTHESIS 5B	Encodes a protein that is predicted to act as a imidazoleglycerol-phosphate dehydratase involved in histidine biosynthesis	HISTIDINE BIOSYNTHESIS 5B;(source:Araport11)
AT4G15165.1	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein		N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT4G15200.2	protein_coding	formin 3	Actin nucleation factor that directs the formation of actin cables in pollen tubes. Involved in cytoplasmic streaming and polarized growth in pollen tubes.	formin 3;(source:Araport11)
AT4G15233.2	protein_coding	ABC-2 and Plant PDR ABC-type transporter family protein		ABC-2 and Plant PDR ABC-type transporter family protein;(source:Araport11)
AT4G15760.2	protein_coding	monooxygenase 1	Encodes a protein with similarity to monooxygenases that are known to degrade salicylic acid (SA).	monooxygenase 1;(source:Araport11)
AT4G16070.2	protein_coding	Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3		lipase class 3 family protein;(source:Araport11)
AT4G16330.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G16450.2	protein_coding			NADH-ubiquinone oxidoreductase;(source:Araport11)
AT4G16745.2	protein_coding	Exostosin family protein		Exostosin family protein;(source:Araport11)
AT4G16748.1	other_rna			other_RNA;(source:Araport11)
AT4G16760.2	protein_coding	acyl-CoA oxidase 1	Encodes a medium to long-chain acyl-CoA oxidase. Catalyzes the first step of fatty acid beta-oxidation. Involved in jasmonate biosynthesis. Gene expression is induced by wounding, drought stress, abscisic acid, and jasmonate.	acyl-CoA oxidase 1;(source:Araport11)
AT4G17020.3	protein_coding	transcription factor-related		transcription factor-like protein;(source:Araport11)
AT4G17100.2	protein_coding			poly(U)-specific endoribonuclease-B protein;(source:Araport11)
AT4G17140.3	protein_coding	pleckstrin homology (PH) domain-containing protein		pleckstrin homology (PH) domain-containing protein;(source:Araport11)
AT4G17240.2	protein_coding			structural maintenance of chromosomes protein;(source:Araport11)
AT4G17250.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G17410.2	protein_coding	DWNN domain, a CCHC-type zinc finger	PQT3 is a nuclear localized E3 ligase involved in negative regulation of stress tolerance.PRMT4b is a substrate of PQT3.	DWNN domain, a CCHC-type zinc finger;(source:Araport11)
AT4G17410.3	protein_coding	DWNN domain, a CCHC-type zinc finger	PQT3 is a nuclear localized E3 ligase involved in negative regulation of stress tolerance.PRMT4b is a substrate of PQT3.	DWNN domain, a CCHC-type zinc finger;(source:Araport11)
AT4G17470.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G17470.3	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G17570.2	protein_coding	GATA transcription factor 26	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 26;(source:Araport11)
AT4G17570.3	protein_coding	GATA transcription factor 26	Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 26;(source:Araport11)
AT4G17620.3	protein_coding	glycine-rich protein	NAD-RNA decapping enzyme.Mediates the connection between  RNA turnover and retrograde chloroplast-to-nucleus signaling.	glycine-rich protein;(source:Araport11)
AT4G17640.2	protein_coding	casein kinase II  beta chain 2	Encodes casein kinase II beta (regulatory) subunit.	casein kinase II beta chain 2;(source:Araport11)
AT4G17830.2	protein_coding	Peptidase M20/M25/M40 family protein	NAOD encodes a functional acetylornithine deacetylase. Silenced lines plants flower early but have reduced fertility (siliques do not develop) as well as reduced ornithine levels.NAOD mediates a linear pathway for ornithine biosynthesis.	Peptidase M20/M25/M40 family protein;(source:Araport11)
AT4G18020.6	protein_coding	CheY-like two-component responsive regulator family protein	Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).	CheY-like two-component responsive regulator family protein;(source:Araport11)
AT4G18140.3	protein_coding	SCP1-like small phosphatase 4b	Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).	SCP1-like small phosphatase 4b;(source:Araport11)
AT4G18380.2	protein_coding	F-box family protein		F-box family protein;(source:Araport11)
AT4G18710.2	protein_coding	Protein kinase superfamily protein	Encodes BIN2, a member of the ATSK (shaggy-like kinase) family. BIN2 functions in the cross-talk between auxin and brassinosteroid signaling pathways. BIN2 regulates root epidermal cell fate specification by phosphorylating EGL3 and TTG1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus.  KIB1 interacts with BIN2 blocking its interaction with substrates and promotes BIN2 degradation.	Protein kinase superfamily protein;(source:Araport11)
AT4G18740.3	protein_coding	Rho termination factor		Rho termination factor;(source:Araport11)
AT4G18810.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G18905.2	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G18960.2	protein_coding	K-box region and MADS-box transcription factor family protein 	Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT4G18970.2	protein_coding	GDSL-like Lipase/Acylhydrolase superfamily protein	GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT4G18975.4	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G19040.3	protein_coding	ENHANCED DISEASE RESISTANCE 2	Encodes a PH and START domain-containing protein that mediates resistance to pathogenic fungi. Resistance requires salicylic acid signalling. Mutants are resistant to E. cichoracearum. Expressed throughout plant tissues and possibly localized to membranes /mitochondrion.	ENHANCED DISEASE RESISTANCE 2;(source:Araport11)
AT4G19410.2	protein_coding	Pectinacetylesterase family protein		Pectinacetylesterase family protein;(source:Araport11)
AT4G19440.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G19500.2	protein_coding	nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding		nucleoside-triphosphatase/transmembrane receptor/nucleotide binding/ATP binding protein;(source:Araport11)
AT4G19550.2	protein_coding	zinc ion binding;transcription regulators		zinc ion binding / transcription regulator;(source:Araport11)
AT4G19890.1	protein_coding	Pentatricopeptide repeat (PPR-like) superfamily protein		Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT4G19960.2	protein_coding	K+ uptake permease 9	Encodes a potassium ion transmembrane transporter. Also mediates cesium uptake when expressed in E. coli. The mRNA is cell-to-cell mobile.	K+ uptake permease 9;(source:Araport11)
AT4G19990.2	protein_coding	FAR1-related sequence 1		FAR1-related sequence 1;(source:Araport11)
AT4G20110.2	protein_coding	VACUOLAR SORTING RECEPTOR 7		VACUOLAR SORTING RECEPTOR 7;(source:Araport11)
AT4G20260.5	protein_coding	plasma-membrane associated cation-binding protein 1	Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and  PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels. The mRNA is cell-to-cell mobile.	plasma-membrane associated cation-binding protein 1;(source:Araport11)
AT4G20260.6	protein_coding	plasma-membrane associated cation-binding protein 1	Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and  PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels. The mRNA is cell-to-cell mobile.	plasma-membrane associated cation-binding protein 1;(source:Araport11)
AT4G20350.2	protein_coding	oxidoreductases		oxidoreductase;(source:Araport11)
AT4G20430.2	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT4G20910.2	protein_coding	double-stranded RNA binding protein-related / DsRBD protein-related	Encodes an enhancer of hua1 and hua2 tha acts to specify reproductive organ identities and to repress A gene function. HEN1 also shares AG's non-homeotic function in controlling floral determinacy.  Mutants display corymb-like inflorescences.  HEN1 is a methyltransferase that methylates miRNAs and siRNAs on the ribose of the last nucleotide.  The 3'-end methylation probably protects the 3' ends of the small RNAs from uridylation.	double-stranded RNA binding protein-related / DsRBD protein-like protein;(source:Araport11)
AT4G20980.4	protein_coding	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)		Eukaryotic translation initiation factor 3 subunit 7 (eIF-3);(source:Araport11)
AT4G21150.2	protein_coding	ribophorin II (RPN2) family protein		ribophorin II (RPN2) family protein;(source:Araport11)
AT4G21150.3	protein_coding	ribophorin II (RPN2) family protein		ribophorin II (RPN2) family protein;(source:Araport11)
AT4G21450.3	protein_coding	PapD-like superfamily protein		PapD-like superfamily protein;(source:Araport11)
AT4G21534.1	protein_coding	Diacylglycerol kinase family protein		Diacylglycerol kinase family protein;(source:Araport11)
AT4G21620.2	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G21660.2	protein_coding	proline-rich spliceosome-associated (PSP) family protein		proline-rich spliceosome-associated (PSP) family protein;(source:Araport11)
AT4G21720.2	protein_coding			defensin-like protein;(source:Araport11)
AT4G21860.3	protein_coding	methionine sulfoxide reductase B 2		methionine sulfoxide reductase B 2;(source:Araport11)
AT4G21903.2	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT4G21910.4	protein_coding	MATE efflux family protein		MATE efflux family protein;(source:Araport11)
AT4G21940.2	protein_coding	calcium-dependent protein kinase 15	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 15;(source:Araport11)
AT4G21990.2	protein_coding	APS reductase 3	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.	APS reductase 3;(source:Araport11)
AT4G22120.6	protein_coding	ERD (early-responsive to dehydration stress) family protein	Calcium-permeable stretch activated cation channel.	ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G22305.1	protein_coding	alpha/beta-Hydrolases superfamily protein	Encodes SOBER1, a carboxylesterase that inhibits AvrBsT-triggered phenotypes in Arabidopsis. SOBER1 was formerly linked to AT4G22300 but this locus was split in the TAIR10 annotation into AT4G22300 and AT4G22305. AT4G22300 is now known as TIPSY1 and AT4G22305 corresponds to SOBER1.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G22320.2	protein_coding			golgin family A protein;(source:Araport11)
AT4G22350.2	protein_coding	Ubiquitin C-terminal hydrolases superfamily protein		Ubiquitin C-terminal hydrolases superfamily protein;(source:Araport11)
AT4G22540.4	protein_coding	OSBP(oxysterol binding protein)-related protein 2A		OSBP(oxysterol binding protein)-related protein 2A;(source:Araport11)
AT4G22758.1	protein_coding			PPR containing protein;(source:Araport11)
AT4G22830.2	protein_coding			YCF49-like protein;(source:Araport11)
AT4G22970.2	protein_coding	homolog of separase	Encodes a separase (ESP), homologous to human and mouse separase protein. Separase is a capase family protease required for the release of sister chromatid cohesion during meiosis and mitosis.  Arabidopsis separase contains a predicted 2Fe2S-ferredoxin domain that is not present in the proteins of other organisms. Also contains a putative EF-hand calcium binding domain. Mutant seeds exhibited embryo arrest at the globular stage. The endosperm also exhibited a weak titan-like phenotype. Transgenic plants expressing AESP RNA interference (RNAi) from the meiosis-specific DMC1 promoter exhibited alterations in chromosome segregation during meiosis I and II that resulted in polyads containing from one to eight microspores. Plays an essential role in embryo development.  Required for the removal of cohesin from meiotic chromosomes and establishment of meiotic nuclear domains. This gene was also identified through the rsw4 mutant. Lines carrying recessive, temperature-sensitive mutations exhibit reduced anisotropic growth at 30 degrees Celsius. Microtubules and cellulose microfibrils are not depleted or disoriented in the mutants at the restrictive temperature.	separase;(source:Araport11)
AT4G22990.2	protein_coding	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein	Encodes a member of the PHOSPHATE TRANSPORTER 5 family (PHT5;3). Overexpression of PHT5:3 leads to Pi sequestration into vacuoles and altered regulation of Pi starvation-responsive genes.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT4G23010.3	protein_coding	UDP-galactose transporter 2		UDP-galactose transporter 2;(source:Araport11)
AT4G23020.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G23100.3	protein_coding	glutamate-cysteine ligase	Encodes the enzyme glutamate-cysteine ligase catalyzing the first, and rate-limiting, step of glutathione biosynthesis.  Required for cell proliferation at the root tip. Involved in susceptibility to the bacterial pathogen Pseudomonas syringae. Mutants are phytoalexin defective.	glutamate-cysteine ligase;(source:Araport11)
AT4G23260.2	protein_coding	cysteine-rich RLK (RECEPTOR-like protein kinase) 18	Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 18;(source:Araport11)
AT4G23330.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G23420.3	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G23450.2	protein_coding	RING/U-box superfamily protein	AtAIRP1 gene encodes a C3H2C3-type RING E3 Ub ligase. It has been shown to be a positive regulator in the Arabidopsis ABA-dependent drought response.	RING/U-box superfamily protein;(source:Araport11)
AT4G23450.3	protein_coding	RING/U-box superfamily protein	AtAIRP1 gene encodes a C3H2C3-type RING E3 Ub ligase. It has been shown to be a positive regulator in the Arabidopsis ABA-dependent drought response.	RING/U-box superfamily protein;(source:Araport11)
AT4G23620.2	protein_coding	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain		Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein;(source:Araport11)
AT4G23660.3	protein_coding	polyprenyltransferase 1	Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50).	polyprenyltransferase 1;(source:Araport11)
AT4G23800.2	protein_coding	HMG (high mobility group) box protein	Encodes a protein containing three copies of the HMG (high mobility group)-box domain.  The two Arabidopsis 3xHMG-box proteins are: AT4G11080 (3xHMG-box1) and AT4G23800 (3xHMG-box2).  Interacts with mitotic and meiotic chromosomes.	HMG (high mobility group) box protein;(source:Araport11)
AT4G23895.3	protein_coding	Pleckstrin homology (PH) domain-containing protein		Pleckstrin homology (PH) domain-containing protein;(source:Araport11)
AT4G23910.2	protein_coding		UAP56-interacting factor2, binds single stranded RNA and, along with UIEF1,,appears to play a role in nuclear export of RNA.	hypothetical protein;(source:Araport11)
AT4G23950.2	protein_coding	Galactose-binding protein	Encodes a member of the mid-SUN subfamily of SUN-domain proteins.  It is involved in early seed development and nuclear morphology.	Galactose-binding protein;(source:Araport11)
AT4G24460.2	protein_coding	CRT (chloroquine-resistance transporter)-like transporter 2	Encodes one of the CRT-Like transporters (CLT1/AT5G19380, CLT2/AT4G24460, CLT3/AT5G12170). Required for glutathione homeostasis and stress responses.  Mutants lacking these transporters are heavy metal-sensitive, glutathione(GSH)-deficient, and hypersensitive to Phytophthora infection.	CRT (chloroquine-resistance transporter)-like transporter 2;(source:Araport11)
AT4G24470.3	protein_coding	GATA-type zinc finger protein with TIFY domain	ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif.	GATA-type zinc finger protein with TIFY domain-containing protein;(source:Araport11)
AT4G24500.3	protein_coding	hydroxyproline-rich glycoprotein family protein	Encodes a proline-rich protein SICKLE (SIC). Required for development and abiotic stress tolerance. Involved in microRNA biogenesis. It is involved in mRNA splicing. It is a single copy gene in Arabidopsis and likely specific to higher plants. Along with RCN1, it functions in regulating auxin transport processes in part by regulating the recycling of PIN1 and PIN2 auxin transporters. It is required for circadian clock temperature responses.	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G24520.2	protein_coding	P450 reductase 1	Encodes a cyp450 reductase likely to be involved in phenylpropanoid metabolism.	P450 reductase 1;(source:Araport11)
AT4G24550.3	protein_coding	Clathrin adaptor complexes medium subunit family protein	Encodes a component of the AP4 complex and is involved in vacuolar sorting of storage proteins.	Clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT4G24610.2	protein_coding			pesticidal crystal cry8Ba protein;(source:Araport11)
AT4G24780.2	protein_coding	Pectin lyase-like superfamily protein	Encodes a pectate lyase involved in response to nematodes.	Pectin lyase-like superfamily protein;(source:Araport11)
AT4G24800.3	protein_coding	MA3 domain-containing protein		MA3 domain-containing protein;(source:Araport11)
AT4G24810.3	protein_coding	Protein kinase superfamily protein	similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)	Protein kinase superfamily protein;(source:Araport11)
AT4G24960.3	protein_coding	HVA22 homologue D	Homologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family, it may be involved in regulation of autophagy during development. The mRNA is cell-to-cell mobile.	HVA22 homologue D;(source:Araport11)
AT4G25050.2	protein_coding	acyl carrier protein 4	encodes an acyl carrier protein predominantly expressed in leaves. Gene expression is upregulated by light.	acyl carrier protein 4;(source:Araport11)
AT4G25080.5	protein_coding	magnesium-protoporphyrin IX methyltransferase	Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.	magnesium-protoporphyrin IX methyltransferase;(source:Araport11)
AT4G25090.2	protein_coding	Riboflavin synthase-like superfamily protein		Riboflavin synthase-like superfamily protein;(source:Araport11)
AT4G25100.5	protein_coding	Fe superoxide dismutase 1	Fe-superoxide dismutase	Fe superoxide dismutase 1;(source:Araport11)
AT4G25315.2	protein_coding	Expressed protein		Expressed protein;(source:Araport11)
AT4G25340.2	protein_coding	FK506 BINDING PROTEIN 53	Encodes a member of the FKBP-type immunophilin family that functions as a histone chaparone. Binds to 18S rDNA and represses its expression.	FK506 BINDING PROTEIN 53;(source:Araport11)
AT4G25500.4	protein_coding	arginine/serine-rich splicing factor 35	Encodes an arginine/serine-rich splicing factor. The transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS40 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis (DOI:10.1093/nar/gkv751).	arginine/serine-rich splicing factor 35;(source:Araport11)
AT4G25640.2	protein_coding	detoxifying efflux carrier 35	Encodes a multidrug and toxin efflux family transporter. Involved in flavonoid metabolism, affecting Root growth, seed development and germination, and pollen development, release and viability.	detoxifying efflux carrier 35;(source:Araport11)
AT4G25670.2	protein_coding			stress response NST1-like protein;(source:Araport11)
AT4G25710.2	protein_coding	Galactose oxidase/kelch repeat superfamily protein		Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G25770.2	protein_coding	alpha/beta-Hydrolases superfamily protein		alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G25850.2	protein_coding	OSBP(oxysterol binding protein)-related protein 4B		OSBP(oxysterol binding protein)-related protein 4B;(source:Araport11)
AT4G26020.2	protein_coding			4/1 protein short form protein;(source:Araport11)
AT4G26260.2	protein_coding	myo-inositol oxygenase 4	Encodes a myo-inositol oxygenase, which is the first enzyme in the inositol route to ascorbate (L&#8208;ascorbic acid, AsA, vitamin C). Overexpression results in enhanced biomass and abiotic stress tolerance.	myo-inositol oxygenase 4;(source:Araport11)
AT4G26310.2	protein_coding	elongation factor P (EF-P) family protein		elongation factor P (EF-P) family protein;(source:Araport11)
AT4G26483.1	protein_coding	nicotianamine synthases		nicotianamine synthase;(source:Araport11)
AT4G26485.1	protein_coding	Domain of unknown function (DUF2431)		methyltransferase small domain protein;(source:Araport11)
AT4G26542.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G26540;(source:Araport11)
AT4G26580.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G26582.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G26590;(source:Araport11)
AT4G26680.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G26860.2	protein_coding	Predicted pyridoxal phosphate-dependent enzyme, YBL036C type		Putative pyridoxal phosphate-dependent enzyme, YBL036C type;(source:Araport11)
AT4G26950.2	protein_coding	Protein of unknown function, DUF584		senescence regulator (Protein of unknown function, DUF584);(source:Araport11)
AT4G27230.2	protein_coding	histone H2A 2	Encodes HTA2, a histone H2A protein.	histone H2A 2;(source:Araport11)
AT4G27250.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G27630.3	protein_coding	GPCR-type G protein 2	Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG2 binds to GPA1, the alpha subunit of the heterotrimeric G protein.  GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG2 and may act to down-regulate GTG2 binding to ABA. GTG2 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG2 transcript levels do not appear to change in response to ABA or abiotic stresses.	GPCR-type G protein 2;(source:Araport11)
AT4G27852.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G27850 and AT4G27860;(source:Araport11)
AT4G27860.2	protein_coding	vacuolar iron transporter (VIT) family protein		vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT4G28025.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G28162.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G28160;(source:Araport11)
AT4G28190.2	protein_coding	Developmental regulator, ULTRAPETALA	Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy. Acts opposite to CLF which represses AG, but preventing deposition of CLF repressive methylation marks.ULT1 acts as an anti-repressor that counteracts EMF1 action through modulation of histone marks on target genes.	Developmental regulator, ULTRAPETALA;(source:Araport11)
AT4G28280.2	protein_coding	LORELEI-LIKE-GPI ANCHORED PROTEIN 3		LORELEI-LIKE-GPI ANCHORED PROTEIN 3;(source:Araport11)
AT4G28640.3	protein_coding	indole-3-acetic acid inducible 11	Auxin induced gene, IAA11  (IAA11). Check the Comments field on the locus page to view updated sequence annotation.	indole-3-acetic acid inducible 11;(source:Araport11)
AT4G28652.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G28650;(source:Araport11)
AT4G28660.2	protein_coding	photosystem II reaction center PSB28 protein	Similar to PsbW subunit of photosystem II.	photosystem II reaction center PSB28 protein;(source:Araport11)
AT4G28680.3	protein_coding	L-tyrosine decarboxylase	Encodes a stress-induced tyrosine   decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine.  Recombinant TyrDC forms tetramers.	L-tyrosine decarboxylase;(source:Araport11)
AT4G28680.4	protein_coding	L-tyrosine decarboxylase	Encodes a stress-induced tyrosine   decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine.  Recombinant TyrDC forms tetramers.	L-tyrosine decarboxylase;(source:Araport11)
AT4G28706.4	protein_coding	pfkB-like carbohydrate kinase family protein		pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT4G28770.2	protein_coding	Tetraspanin family protein		Tetraspanin family protein;(source:Araport11)
AT4G29180.2	protein_coding	root hair specific 16		root hair specific 16;(source:Araport11)
AT4G29800.2	protein_coding	PATATIN-like protein 8		PATATIN-like protein 8;(source:Araport11)
AT4G29940.2	protein_coding	pathogenesis related homeodomain protein  A	Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding.	pathogenesis related homeodomain protein A;(source:Araport11)
AT4G30000.2	protein_coding	Dihydropterin pyrophosphokinase / Dihydropteroate synthase		Dihydropterin pyrophosphokinase / Dihydropteroate synthase;(source:Araport11)
AT4G30160.2	protein_coding	villin 4	Encodes a major actin filament bundling protein that is involved in root hair growth through regulating actin organization in a Ca2+-dependent manner.	villin 4;(source:Araport11)
AT4G30190.2	protein_coding	H(+)-ATPase 2	Belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory  regions within the C-terminal domain. Its plasma membrane localization is light-dependent.	H[+]-ATPase 2;(source:Araport11)
AT4G30200.4	protein_coding	vernalization5/VIN3-like	Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.	vernalization5/VIN3-like protein;(source:Araport11)
AT4G30220.2	protein_coding	small nuclear ribonucleoprotein F		small nuclear ribonucleoprotein F;(source:Araport11)
AT4G30560.2	protein_coding	cyclic nucleotide gated channel 9	member of Cyclic nucleotide gated channel family	cyclic nucleotide gated channel 9;(source:Araport11)
AT4G30690.2	protein_coding	Translation initiation factor 3 protein	SVR9-LIKE1 (SVR9L1)	Translation initiation factor 3 protein;(source:Araport11)
AT4G30890.3	protein_coding	ubiquitin-specific protease 24	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 24;(source:Araport11)
AT4G31000.2	protein_coding	Calmodulin-binding protein		Calmodulin-binding protein;(source:Araport11)
AT4G31080.2	protein_coding	Protein of unknown function (DUF2296)	Encodes one of two LUNAPARK proteins in Arabidopsis.  Both LNPA and LNPB are predominantly distributed throughout the ER, but not preferentially localized at the three-way junctions. Mutation of both LNPA and LNPB together caused the cortical ER to develop poor ER cisternae and a less dense tubular network.	integral membrane metal-binding family protein (DUF2296);(source:Araport11)
AT4G31170.4	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G31300.3	protein_coding	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	Encodes 20S proteasome subunit PBA1 (PBA1). PBA1 acts as a plant caspase-3-like enzyme.	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein;(source:Araport11)
AT4G31480.2	protein_coding	Coatomer, beta subunit		Coatomer, beta subunit;(source:Araport11)
AT4G31530.2	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein		NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G31880.2	protein_coding		One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	transcriptional regulator;(source:Araport11)
AT4G31890.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT4G31900.2	protein_coding	chromatin remodeling factor, putative		chromatin remodeling factor;(source:Araport11)
AT4G31990.4	protein_coding	aspartate aminotransferase 5	Encodes a plastid-localized aspartate aminotransferase.  Does not display any PAT (glutamate/aspartate-prephenate aminotransferase) activity even in the presence of a high concentration of prephenate.	aspartate aminotransferase 5;(source:Araport11)
AT4G32000.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G32272.2	protein_coding	Nucleotide/sugar transporter family protein	Golgi-localized nucleotide sugar (UDP-GlcNAc) transporter that delivers an essential substrate for the maturation of N-glycans and the GIPC class of sphingolipids.	Nucleotide/sugar transporter family protein;(source:Araport11)
AT4G32420.3	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G32420.4	protein_coding	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G32440.3	protein_coding	Plant Tudor-like RNA-binding protein		Plant Tudor-like RNA-binding protein;(source:Araport11)
AT4G32551.2	protein_coding	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain	LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.	transcriptional corepressor LEUNIG;(source:Araport11)
AT4G32760.2	protein_coding	ENTH/VHS/GAT family protein		ENTH/VHS/GAT family protein;(source:Araport11)
AT4G32920.2	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G32920.3	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G32930.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G33110.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G33200.2	protein_coding	myosin, putative	member of Myosin-like proteins	myosin;(source:Araport11)
AT4G33200.3	protein_coding	myosin, putative	member of Myosin-like proteins	myosin;(source:Araport11)
AT4G33240.3	protein_coding	1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases	Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain.  fab1a/fab1b pollen grains not viable and have defective vacuolar organization. FAB1A and FAB1B complement the enlarged vacuolar phenotype of the fission yeast ste12delta mutant.	1-phosphatidylinositol-3-phosphate 5-kinase FAB1A;(source:Araport11)
AT4G33260.2	protein_coding	Transducin family protein / WD-40 repeat family protein	Encodes a CDC20 protein that interacts with APC subunits, components of the mitochondrial checkpoint complex and mitotic cyclin substrates and is indispensable for normal plant development and fertility.	Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G33350.2	protein_coding	Tic22-like family protein		Tic22-like family protein;(source:Araport11)
AT4G33360.3	protein_coding	NAD(P)-binding Rossmann-fold superfamily protein	Encodes an NAD+-dependent dehydrogenase that oxidizes farnesol more efficiently than other prenyl alcohol   substrates.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G33380.2	protein_coding			dimethylallyl, adenosine tRNA methylthiotransferase;(source:Araport11)
AT4G33430.2	protein_coding	BRI1-associated receptor kinase	Leu-rich receptor Serine/threonine protein kinase. Component of BR signaling that interacts with BRI1 in vitro and in vivo to form a heterodimer. Brassinolide-dependent association of BRI1  and BAK1 in vivo. Phosphorylation of both BRI1 and BAK1 on Thr residues was BR dependent. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome.	BRI1-associated receptor kinase;(source:Araport11)
AT4G33490.2	protein_coding	Eukaryotic aspartyl protease family protein		Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G33650.2	protein_coding	dynamin-related protein 3A	Encodes a protein with high sequence similarity to the dynamin superfamily.  Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.	dynamin-related protein 3A;(source:Araport11)
AT4G33980.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G34090.3	protein_coding			cyclin delta-3;(source:Araport11)
AT4G34140.2	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT4G34140.3	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT4G34370.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT4G34419.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G34660.2	protein_coding	SH3 domain-containing protein		SH3 domain-containing protein;(source:Araport11)
AT4G34660.3	protein_coding	SH3 domain-containing protein		SH3 domain-containing protein;(source:Araport11)
AT4G34750.2	protein_coding	SAUR-like auxin-responsive protein family 		SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G35020.2	protein_coding	RAC-like 3	A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.	RAC-like 3;(source:Araport11)
AT4G35020.3	protein_coding	RAC-like 3	A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.	RAC-like 3;(source:Araport11)
AT4G35030.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT4G35080.3	protein_coding	high-affinity nickel-transport family protein		high-affinity nickel-transport family protein;(source:Araport11)
AT4G35100.2	protein_coding	plasma membrane intrinsic protein 3	a member of the plasma membrane intrinsic protein PIP. functions as aquaporin. Salt-stress-inducible MIP	plasma membrane intrinsic protein 3;(source:Araport11)
AT4G35240.2	protein_coding	Protein of unknown function (DUF630 and DUF632)		DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632);(source:Araport11)
AT4G35300.4	protein_coding	tonoplast monosaccharide transporter2		tonoplast monosaccharide transporter2;(source:Araport11)
AT4G35300.5	protein_coding	tonoplast monosaccharide transporter2		tonoplast monosaccharide transporter2;(source:Araport11)
AT4G35440.2	protein_coding	chloride channel E	Enclodes a choride channel protein that is localized to the thlakoid membrane.	chloride channel E;(source:Araport11)
AT4G35450.5	protein_coding	ankyrin repeat-containing protein 2	Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.	ankyrin repeat-containing protein 2;(source:Araport11)
AT4G35560.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	Target promoter of the male germline-specific transcription factor DUO1. The mRNA is cell-to-cell mobile.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G35580.3	protein_coding	NAC transcription factor-like 9	Encodes a calmodulin-binding NAC protein (CBNAC). Contains calmodulin-binding domain in the C-terminus of the protein. Functions as a calmodulin-regulated transcriptional repressor.	NAC transcription factor-like 9;(source:Araport11)
AT4G35600.2	protein_coding	Protein kinase superfamily protein	Encodes a receptor-like cytoplasmic kinase that acts as a spatial inhibitor of cell separation. Analysis of the cDNA previously described in Meiners et al., 1991 revealed mistakes in the predicted open reading frame. The mRNA is cell-to-cell mobile.	Protein kinase superfamily protein;(source:Araport11)
AT4G35785.4	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G35785.5	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G35940.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G36032.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G36030;(source:Araport11)
AT4G36070.2	protein_coding	calcium-dependent protein kinase 18	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 18;(source:Araport11)
AT4G36080.2	protein_coding	phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases	Component of the SPT module of the SAGA complex.	phosphotransferases/inositol or phosphatidylinositol kinase;(source:Araport11)
AT4G36080.3	protein_coding	phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases	Component of the SPT module of the SAGA complex.	phosphotransferases/inositol or phosphatidylinositol kinase;(source:Araport11)
AT4G36105.2	protein_coding			polyamine-modulated factor 1-binding protein;(source:Araport11)
AT4G36195.3	protein_coding	Serine carboxypeptidase S28 family protein		Serine carboxypeptidase S28 family protein;(source:Araport11)
AT4G36690.4	protein_coding	U2 snRNP auxilliary factor, large subunit, splicing factor	Regulates flowering time and displays a redundant role in pollen tube growth together with AtU2AF65b.	U2 snRNP auxilliary factor, large subunit, splicing factor;(source:Araport11)
AT4G36808.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G36810;(source:Araport11)
AT4G36920.2	protein_coding	Integrase-type DNA-binding superfamily protein	Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G36980.3	protein_coding			CLK4-associating serine/arginine-rich protein;(source:Araport11)
AT4G36980.4	protein_coding			CLK4-associating serine/arginine-rich protein;(source:Araport11)
AT4G37020.2	protein_coding			initiation factor 4A-like protein;(source:Araport11)
AT4G37060.2	protein_coding	PATATIN-like protein 5	Patatin-related phospholipase A. Expressed weakly in roots, cotyledons, and leaves but is transcriptionally induced  by auxin. Phosphorylation by calcium-dependent protein kinases in vitro  enhances its activity.	PATATIN-like protein 5;(source:Araport11)
AT4G37080.3	protein_coding	Protein of unknown function, DUF547		ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT4G37520.2	protein_coding	Peroxidase superfamily protein		Peroxidase superfamily protein;(source:Araport11)
AT4G37550.3	protein_coding	Acetamidase/Formamidase family protein		Acetamidase/Formamidase family protein;(source:Araport11)
AT4G37553.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G37550 and AT4G37560;(source:Araport11)
AT4G37680.2	protein_coding	heptahelical protein 4	heptahelical transmembrane protein HHP4	heptahelical protein 4;(source:Araport11)
AT4G38160.3	protein_coding	Mitochondrial transcription termination factor family protein	Encodes a member of the mitochondrial transcription termination factor family. MTERF6 is localized to both the mitochondria and chloroplast. It is required for ILE tRNA maturation during chloroplast development. Loss of function of MTERF6 results in plants with defective chloroplasts or reduced rate of photosynthesis when MTERF6 expression is low.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT4G38230.2	protein_coding	calcium-dependent protein kinase 26	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 26;(source:Araport11)
AT4G38230.3	protein_coding	calcium-dependent protein kinase 26	member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 26;(source:Araport11)
AT4G38240.3	protein_coding	alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative	Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.	alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase;(source:Araport11)
AT4G38270.2	protein_coding	galacturonosyltransferase 3	Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 3;(source:Araport11)
AT4G38350.2	protein_coding	Patched family protein		Patched family protein;(source:Araport11)
AT4G38510.5	protein_coding	ATPase, V1 complex, subunit B protein	One of three genes encoding the vacuolar ATP synthase subunit B1.  The protein binds to and co-localizes with F-actin, bundles F-actin to form higher-order structure, and stabilizes actin filaments in vitro.	ATPase, V1 complex, subunit B protein;(source:Araport11)
AT4G38552.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G38550;(source:Araport11)
AT4G38570.2	protein_coding	probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2		Putative CDP-diacylglycerol-inositol 3-phosphatidyltransferase 2;(source:Araport11)
AT4G38710.2	protein_coding	glycine-rich protein		glycine-rich protein;(source:Araport11)
AT4G38910.2	protein_coding	basic pentacysteine 5	Encodes a basic pentacysteine protein that is localized to the nucleus and specifically binds in vitro to GA dinucleotide repeats.	basic pentacysteine 5;(source:Araport11)
AT4G38932.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G38930;(source:Araport11)
AT4G38960.3	protein_coding	B-box type zinc finger family protein	BBX19 is a B-box containing transcriptional regulator involved in photomporphogenesis and flowering.	B-box type zinc finger family protein;(source:Araport11)
AT4G39100.2	protein_coding	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein	Encodes a plant-specific histone reader capable of recognizing both H3K27me3 and H3K4me3 via its bromo-adjacent homology (BAH) and plant homeodomain (PHD) domains, respectively. Detailed biochemical and structural studies suggest a binding mechanism that is mutually exclusive for either H3K4me3 or H3K27me3. SHL plays a role in the repression of flowering.	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT4G39150.2	protein_coding	DNAJ heat shock N-terminal domain-containing protein		DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT4G39160.2	protein_coding	Homeodomain-like superfamily protein		Homeodomain-like superfamily protein;(source:Araport11)
AT4G39170.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein		Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT4G39180.2	protein_coding	Sec14p-like phosphatidylinositol transfer family protein	encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae	Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT4G39280.2	protein_coding	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative		phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase;(source:Araport11)
AT4G39370.3	protein_coding	ubiquitin-specific protease 27	Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 27;(source:Araport11)
AT4G39380.2	protein_coding			TSL-kinase interacting-like protein;(source:Araport11)
AT4G39390.3	protein_coding	nucleotide sugar transporter-KT 1	Encodes a golgi localized  nucleotide sugar transporter.	nucleotide sugar transporter-KT 1;(source:Araport11)
AT4G39460.2	protein_coding	S-adenosylmethionine carrier 1	Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway.	S-adenosylmethionine carrier 1;(source:Araport11)
AT4G39540.3	protein_coding	shikimate kinase 2	Encodes a shikimate kinase. Its transcripts appear to be expressed in vegetative tissues and developing embryos. SK2 transcript levels rise in response to Phytophthora infestans spores. SK2 is believed to be localized to the chloroplast.	shikimate kinase 2;(source:Araport11)
AT4G39620.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G39710.2	protein_coding	FK506-binding protein 16-2		FK506-binding protein 16-2;(source:Araport11)
AT4G39838.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G39840;(source:Araport11)
AT4G39850.2	protein_coding	peroxisomal ABC transporter 1	Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.	peroxisomal ABC transporter 1;(source:Araport11)
AT4G39850.3	protein_coding	peroxisomal ABC transporter 1	Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.	peroxisomal ABC transporter 1;(source:Araport11)
AT4G39870.2	protein_coding	TLD-domain containing nucleolar protein		TLD-domain containing nucleolar protein;(source:Araport11)
AT4G39925.1	protein_coding	AT hook motif DNA-binding family protein		AT hook motif DNA-binding family protein;(source:Araport11)
AT4G39930.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G01010.4	protein_coding			retinal-binding protein;(source:Araport11)
AT5G01015.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G01270.2	protein_coding	carboxyl-terminal domain (ctd) phosphatase-like 2	Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex.  Regulates plant growth, stress and auxin responses.	carboxyl-terminal domain (ctd) phosphatase-like 2;(source:Araport11)
AT5G01430.2	protein_coding	Got1/Sft2-like vescicle transport protein family		Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT5G01542.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G01540;(source:Araport11)
AT5G01620.3	protein_coding	TRICHOME BIREFRINGENCE-LIKE 35	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).TBL35 are required only for xylan 3-O-monoacetylation and 2,3-di-O-acetylation. The biochemical phenotype can be observed in tbl35 esk1, double mutant and tbl34 tbl35 esk1 triple mutants.	TRICHOME BIREFRINGENCE-LIKE 35;(source:Araport11)
AT5G01780.2	protein_coding	2-oxoglutarate-dependent dioxygenase family protein		2-oxoglutarate-dependent dioxygenase family protein;(source:Araport11)
AT5G01810.3	protein_coding	CBL-interacting protein kinase 15	Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase.	CBL-interacting protein kinase 15;(source:Araport11)
AT5G02035.1	miRNA_primary_transcript			microRNA ath-MIR2111b precursor;(source:Araport11)
AT5G02170.2	protein_coding	Transmembrane amino acid transporter family protein		Transmembrane amino acid transporter family protein;(source:Araport11)
AT5G02270.2	protein_coding	non-intrinsic ABC protein 9	member of NAP subfamily	non-intrinsic ABC protein 9;(source:Araport11)
AT5G02320.2	protein_coding	myb domain protein 3r-5	Encodes a putative c-MYB-like transcription factor of the MYB3R factor gene family (MYB3R5).	myb domain protein 3r-5;(source:Araport11)
AT5G02530.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G02560.2	protein_coding	histone H2A 12	Encodes HTA12, a histone H2A protein.	histone H2A 12;(source:Araport11)
AT5G02610.2	protein_coding	Ribosomal L29 family protein 		Ribosomal L29 family protein;(source:Araport11)
AT5G02910.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G03040.3	protein_coding	IQ-domain 2	Member of IQ67 (CaM binding) domain containing family.	IQ-domain 2;(source:Araport11)
AT5G03180.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G03415.2	protein_coding	Transcription factor DP	Encodes a homolog of the animal DP protein.  DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost.	Transcription factor DP;(source:Araport11)
AT5G03500.3	protein_coding	Mediator complex, subunit Med7	Encodes together with its paralog MED7A a subunit of the middle module of the transcriptional co-regulator Mediator complex. Regulates genes required for normal development of etiolated seedlings.	Mediator complex, subunit Med7;(source:Araport11)
AT5G03540.3	protein_coding	exocyst subunit exo70 family protein A1	AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. It plays a central role in Casparian strip formation, generating a transient positional information that will be translated into a precisely localized cell wall modification.	exocyst subunit exo70 family protein A1;(source:Araport11)
AT5G03570.2	protein_coding	iron regulated 2	Encodes FPN2, a tonoplast localized nickel transport protein. FPN2 is one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.	iron regulated 2;(source:Araport11)
AT5G03660.2	protein_coding	Family of unknown function (DUF662) 		transcriptional activator (DUF662);(source:Araport11)
AT5G03860.2	protein_coding	malate synthase	Encodes a protein with malate synthase activity.	malate synthase;(source:Araport11)
AT5G04000.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G04080.2	protein_coding			cysteine-rich TM module stress tolerance protein;(source:Araport11)
AT5G04080.3	protein_coding			cysteine-rich TM module stress tolerance protein;(source:Araport11)
AT5G04230.2	protein_coding	phenyl alanine ammonia-lyase 3	Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes.  Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).	phenyl alanine ammonia-lyase 3;(source:Araport11)
AT5G04460.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G04460.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G04480.2	protein_coding	UDP-Glycosyltransferase superfamily protein	Encodes a protein with sequence similarity to glycosyltransferases that is localized to the golgi apparatus and is involved in pollen tube development.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G04740.2	protein_coding	ACT domain-containing protein	Encodes a ACT domain-containing protein.  The ACT domain, named after bacterial aspartate kinase, chorismate mutase and TyrA (prephenate dehydrogenase), is a regulatory domain that serves as an amino acid-binding site in feedback-regulated amino acid metabolic enzymes.	ACT domain-containing protein;(source:Araport11)
AT5G04850.2	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT5G05570.2	protein_coding	transducin family protein / WD-40 repeat family protein		transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G05580.2	protein_coding	fatty acid desaturase 8	Encodes a temperature sensitive plastidic fatty acid desaturase.	fatty acid desaturase 8;(source:Araport11)
AT5G05730.2	protein_coding	anthranilate synthase alpha subunit 1	ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis.  ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots.	anthranilate synthase alpha subunit 1;(source:Araport11)
AT5G05740.3	protein_coding	ethylene-dependent gravitropism-deficient and yellow-green-like 2	S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442–454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171–179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.	ethylene-dependent gravitropism-deficient and yellow-green-like 2;(source:Araport11)
AT5G05780.2	protein_coding	RP non-ATPase subunit 8A	Encodes a putative 26S proteasome subunit RPN8a.  The function of RPN8a and other 26S subunits may be required for specifying leaf adaxial identity. The mRNA is cell-to-cell mobile.	RP non-ATPase subunit 8A;(source:Araport11)
AT5G06110.2	protein_coding	DnaJ domain ;Myb-like DNA-binding domain	Encodes a ZRF1 chromatin regulator. Functions in regulating plant growth and development.	DnaJ and myb-like DNA-binding domain-containing protein;(source:Araport11)
AT5G06120.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G06120.3	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G06120.4	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G06165.1	other_rna			other_RNA;(source:Araport11)
AT5G06190.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G06220.2	protein_coding	LETM1-like protein		LETM1-like protein;(source:Araport11)
AT5G06265.3	protein_coding	hyaluronan mediated motility receptor-related		hyaluronan mediated motility receptor-like protein;(source:Araport11)
AT5G06440.4	protein_coding			polyketide cyclase/dehydrase/lipid transport superfamily protein;(source:Araport11)
AT5G06780.2	protein_coding	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein		Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein;(source:Araport11)
AT5G06800.2	protein_coding	myb-like HTH transcriptional regulator family protein		myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT5G06839.3	protein_coding	bZIP transcription factor family protein		bZIP transcription factor family protein;(source:Araport11)
AT5G06980.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G06980.4	protein_coding			hypothetical protein;(source:Araport11)
AT5G07060.2	protein_coding	CCCH-type zinc fingerfamily protein with RNA-binding domain	Encodes MAC5C, homologous to MAC5A. MAC5A is a component of the MOS4-associated complex (MAC) that contributes to snc1- mediated autoimmunity. Homologues include AT1G07360 (MAC5A), AT2G29580 (MAC5B) and AT5G07060 (MAC5C). MAC5A and MAC5B are more closely related to each other than to MAC5C.	CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT5G07152.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G07150;(source:Araport11)
AT5G07260.2	protein_coding	START (StAR-related lipid-transfer) lipid-binding domain		START (StAR-related lipid-transfer) lipid-binding domain-containing protein;(source:Araport11)
AT5G07340.2	protein_coding	Calreticulin family protein		Calreticulin family protein;(source:Araport11)
AT5G07390.2	protein_coding	respiratory burst oxidase homolog A		respiratory burst oxidase homolog A;(source:Araport11)
AT5G07770.2	protein_coding	Actin-binding FH2 protein		Actin-binding FH2 protein;(source:Araport11)
AT5G07790.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G07930.3	protein_coding	MEI2 C-terminal RRM only like 2	A member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.	MEI2 C-terminal RRM only like 2;(source:Araport11)
AT5G07940.2	protein_coding			dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G07940.3	protein_coding			dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G08080.3	protein_coding	syntaxin of plants 132	member of SYP13 Gene Family	syntaxin of plants 132;(source:Araport11)
AT5G08130.4	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix-loop-helix (bHLH) family protein BIM1 (BES1-INTERACTING MYC-LIKE 1), involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G08130.5	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix-loop-helix (bHLH) family protein BIM1 (BES1-INTERACTING MYC-LIKE 1), involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G08130.6	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Encodes a basic helix-loop-helix (bHLH) family protein BIM1 (BES1-INTERACTING MYC-LIKE 1), involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G08180.2	protein_coding	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT5G08305.1	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G08440.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G08565.2	protein_coding	Transcription initiation Spt4-like protein		Transcription initiation Spt4-like protein;(source:Araport11)
AT5G08600.2	protein_coding	U3 ribonucleoprotein (Utp) family protein		U3 ribonucleoprotein (Utp) family protein;(source:Araport11)
AT5G08640.2	protein_coding	flavonol synthase 1	Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols. Co-expressed with CHI and CHS (qRT-PCR).	flavonol synthase 1;(source:Araport11)
AT5G09410.3	protein_coding	ethylene induced calmodulin binding protein	calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum)	ethylene induced calmodulin binding protein;(source:Araport11)
AT5G09600.3	protein_coding	succinate dehydrogenase 3-1	Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.	succinate dehydrogenase 3-1;(source:Araport11)
AT5G09860.2	protein_coding	nuclear matrix protein-related	Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. One of the pathways affected by THO1 is the miRNA399-PHO2 pathway that regulates root APase activity.	nuclear matrix protein-like protein;(source:Araport11)
AT5G10030.2	protein_coding	TGACG motif-binding factor 4	Encodes a member of basic leucine zipper transcription gene family.  Nomenclature according to Xiang, et al. (1997).	TGACG motif-binding factor 4;(source:Araport11)
AT5G10100.2	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G10140.4	protein_coding	K-box region and MADS-box transcription factor family protein	MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3? to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G10350.3	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein	Encodes a nuclear-localized RNA recognition motif-containing protein that forms homodimers.  It interacts with telomere and non-telomere associated proteins. Null mutation does not result in changes in telomerase activity or telomere length.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G10360.2	protein_coding	Ribosomal protein S6e	RPS6A and RPS6B are fully redundant and essential during gametogenesis.	Ribosomal protein S6e;(source:Araport11)
AT5G10450.3	protein_coding	G-box regulating factor 6	Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3&#955;). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1. Interacts with JAZ10.4 which lacks the Jas motif.  It is also phosphorylated by CRPK1 as part of the response to cold and translocates to the nucleus after phosphorylation.	G-box regulating factor 6;(source:Araport11)
AT5G10450.4	protein_coding	G-box regulating factor 6	Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3&#955;). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1. Interacts with JAZ10.4 which lacks the Jas motif.  It is also phosphorylated by CRPK1 as part of the response to cold and translocates to the nucleus after phosphorylation.	G-box regulating factor 6;(source:Araport11)
AT5G10480.3	protein_coding	Protein-tyrosine phosphatase-like, PTPLA	Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early  mitosis and inhibited Arabidopsis seedling growth. Localized in  the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids).	Protein-tyrosine phosphatase-like, PTPLA;(source:Araport11)
AT5G10490.3	protein_coding	MSCS-like 2	A member of MscS-like gene family, structurally very similar to MSL3, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL2-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE.	MSCS-like 2;(source:Araport11)
AT5G10510.3	protein_coding	AINTEGUMENTA-like 6	Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. It is also required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions. Intronic sequences are required for its expression in flowers.Acts redundantly with PLT5 and 7 in lateral root pattern formation.	AINTEGUMENTA-like 6;(source:Araport11)
AT5G10605.1	protein_coding	methyltransferases		methyltransferase;(source:Araport11)
AT5G10605.2	protein_coding	methyltransferases		methyltransferase;(source:Araport11)
AT5G10630.2	protein_coding	Translation elongation factor EF1A/initiation factor IF2gamma family protein	Transcripts of this gene are alternatively spliced to encode either HBS1, a decoding factor translational GTPase, or SKI7, a component of the cytosolic RNA exosome.	Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT5G10660.2	protein_coding	calmodulin-binding protein-related		calmodulin-binding protein-like protein;(source:Araport11)
AT5G10695.2	protein_coding			methionyl-tRNA synthetase;(source:Araport11)
AT5G10710.3	protein_coding			centromere protein O;(source:Araport11)
AT5G10940.2	protein_coding	transducin family protein / WD-40 repeat family protein	ASG2 is farnesylated protein and this post-translational modification impacts its subcellular localization. It is the homolog of the human anti-obesity factor WDTC1 and is involved in the negative regulation of fatty acid biosynthesis. The non-farnesylated form displays a nucleo-cytosolic subcellular localization. The farnesylated form displays a cytosolic subcellular localization. Interaction with At4g05420 (DDB1a) was shown using BiFC approach.	transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G11080.2	protein_coding	Ubiquitin-like superfamily protein		Ubiquitin-like superfamily protein;(source:Araport11)
AT5G11330.2	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT5G11400.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G11490.2	protein_coding	adaptin family protein	Encodes a component of the AP4 complex and is involved in vacuolar sorting of storage proteins.	adaptin family protein;(source:Araport11)
AT5G11500.2	protein_coding			coiled-coil protein;(source:Araport11)
AT5G11870.2	protein_coding	Alkaline phytoceramidase (aPHC)		Alkaline phytoceramidase (aPHC);(source:Araport11)
AT5G12220.2	protein_coding	las1-like family protein		las1-like family protein;(source:Araport11)
AT5G12240.2	protein_coding			octanoyltransferase;(source:Araport11)
AT5G12330.4	protein_coding	Lateral root primordium (LRP) protein-related	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin.  SWP1 is involved in the repression of LRP1 via histone deacetylation.	Lateral root primordium (LRP) protein-like protein;(source:Araport11)
AT5G12440.2	protein_coding	CCCH-type zinc fingerfamily protein with RNA-binding domain		CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT5G12440.3	protein_coding	CCCH-type zinc fingerfamily protein with RNA-binding domain		CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT5G12920.3	protein_coding	Transducin/WD40 repeat-like superfamily protein		Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G13120.2	protein_coding	cyclophilin 20-2	Encodes a lumenal cyclophilin with peptidyl-prolyl isomerase activity that is associated with the NAD(P)H dehydrogenase complex in stromal regions of the thylakoid membrane. It is likely to be important for the accumulation of the hydrophobic domain of the NAD(P)H dehydrogenase complex. This complex is associated with PSI and is responsible for the reduction of plastoquinone.	cyclophilin 20-2;(source:Araport11)
AT5G13130.2	protein_coding	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	Member of the microrchidia protein family which have been described as epigenetic regulators and plant immune mediators, contains a hallmark GHKL-type ATPase domain in N-terminus. Possible role in the development of reproductive tissues.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein;(source:Araport11)
AT5G13360.3	protein_coding	Auxin-responsive GH3 family protein		Auxin-responsive GH3 family protein;(source:Araport11)
AT5G13480.2	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time; affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G13530.2	protein_coding	protein kinases;ubiquitin-protein ligases	Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling.  KEG is essential for Arabidopsis growth and development.  ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway.	protein kinases;(source:Araport11)
AT5G13570.2	protein_coding	decapping 2	Encodes DCP2 with mRNA decapping activity.  DCP2 forms a mRNA decapping complex with DCP1 (At1g08370) and VCS (VARICOSE) (At3g13300). Recombinant DCP2 is enzymatically active in vitro, generating from capped mRNAs m7GDP, and 5’-phosphorylated mRNAs.  DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies.  Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP1.	decapping 2;(source:Araport11)
AT5G13840.2	protein_coding	FIZZY-related 3		FIZZY-related 3;(source:Araport11)
AT5G13950.3	protein_coding			nuclear factor kappa-B-binding protein;(source:Araport11)
AT5G14220.2	protein_coding	Flavin containing amine oxidoreductase family	Encodes PPO2, a putative protoporphyrinogen oxidase based on sequence homology.  Also known as MEE61 (maternal effect embryo arrest 61).  mee61 mutant shows arrested endosperm development.	Flavin containing amine oxidoreductase family;(source:Araport11)
AT5G14270.2	protein_coding	bromodomain and extraterminal domain protein 9	Bromodomain protein that functions as a negative regulator of sugar and ABA signaling.	bromodomain and extraterminal domain protein 9;(source:Araport11)
AT5G14610.2	protein_coding	DEAD box RNA helicase family protein		DEAD box RNA helicase family protein;(source:Araport11)
AT5G14990.2	protein_coding			WPP domain associated protein;(source:Araport11)
AT5G15020.2	protein_coding	SIN3-like 2	Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).	SIN3-like 2;(source:Araport11)
AT5G15022.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G15030;(source:Araport11)
AT5G15070.2	protein_coding	Phosphoglycerate mutase-like family protein	Encodes a functional VIP1/PPIP5K-type ATP-grasp kinase that is involved in both InsP6 to InsP7 conversion and InsP7 to InsP8 conversion. It is the minor isoform in plants and is expressed in pollen.	Phosphoglycerate mutase-like family protein;(source:Araport11)
AT5G15090.2	protein_coding	voltage dependent anion channel 3	Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol. Purified VDAC3 is shown to have voltage-dependent anion channel activity.	voltage dependent anion channel 3;(source:Araport11)
AT5G15250.2	protein_coding	FTSH protease 6	Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescence and high-light acclimation.	FTSH protease 6;(source:Araport11)
AT5G15510.2	protein_coding	TPX2 (targeting protein for Xklp2) protein family		TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT5G15540.2	protein_coding	PHD finger family protein	Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of  sister-chromatid cohesion and chromosome organization  during meiosis.	PHD finger family protein;(source:Araport11)
AT5G15700.2	protein_coding	DNA/RNA polymerases superfamily protein	Nucleus  encoded plastid RNA polymerase. Localized in mitochondria and chloroplast.	DNA/RNA polymerases superfamily protein;(source:Araport11)
AT5G16280.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G16300.4	protein_coding	Vps51/Vps67 family (components of vesicular transport) protein		Vps51/Vps67 family (components of vesicular transport) protein;(source:Araport11)
AT5G16800.3	protein_coding	Acyl-CoA N-acyltransferases (NAT) superfamily protein		Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT5G16980.2	protein_coding	Zinc-binding dehydrogenase family protein		Zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G17010.4	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G17020.2	protein_coding	exportin 1A	Encodes a member of the exportin protein family (XPO1A) which functions as receptors for nuclear export. Binds to a variety of proteins having  leucine rich export signals.Along with XPO1B involved with development of the male and female gametophytes.	exportin 1A;(source:Araport11)
AT5G17460.2	protein_coding			glutamyl-tRNA (Gln) amidotransferase subunit C;(source:Araport11)
AT5G17530.3	protein_coding	phosphoglucosamine mutase family protein		phosphoglucosamine mutase family protein;(source:Araport11)
AT5G17810.2	protein_coding	WUSCHEL related homeobox 12	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Together with WOX11, WOX12 is involved in de novo root organogenesis.	WUSCHEL related homeobox 12;(source:Araport11)
AT5G17910.2	protein_coding			cardiomyopathy-associated protein;(source:Araport11)
AT5G18290.2	protein_coding	Aquaporin-like superfamily protein	Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER	Aquaporin-like superfamily protein;(source:Araport11)
AT5G18380.3	protein_coding	Ribosomal protein S5 domain 2-like superfamily protein		Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT5G18610.2	protein_coding	Protein kinase superfamily protein	Encodes a receptor-like cytoplasmic kinase that is an immediate downstream component of the chitin receptor CERK1 and contributes to the regulation of chitin-induced immunity.	Protein kinase superfamily protein;(source:Araport11)
AT5G18780.2	protein_coding	F-box/RNI-like superfamily protein		F-box/RNI-like superfamily protein;(source:Araport11)
AT5G18830.3	protein_coding	squamosa promoter binding protein-like 7	Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter  of the copper responsive miRNAs miR398b and miR389c.	squamosa promoter binding protein-like 7;(source:Araport11)
AT5G19000.2	protein_coding	BTB-POZ and MATH domain 1	Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 1;(source:Araport11)
AT5G19025.1	protein_coding	Ribosomal protein L34e superfamily protein		Ribosomal protein L34e superfamily protein;(source:Araport11)
AT5G19400.2	protein_coding	Telomerase activating protein Est1	Encodes SMG7, a protein that possesses an evolutionarily conserved EST1 domain and exhibits strong homology to human SMG6 (EST1A) and SMG7 (EST1C) proteins.  SMG7 plays an evolutionarily conserved role in nonsense-mediated RNA decay (NMD). Required for exit from meiosis.  Hypomorphic smg7 alleles render mutant plants sterile by causing an unusual cell-cycle arrest in anaphase II that is characterized by delayed chromosome decondensation and aberrant rearrangement of the meiotic spindle. Disruption of SMG7 causes embryonic lethality.	Telomerase activating protein Est1;(source:Araport11)
AT5G19400.3	protein_coding	Telomerase activating protein Est1	Encodes SMG7, a protein that possesses an evolutionarily conserved EST1 domain and exhibits strong homology to human SMG6 (EST1A) and SMG7 (EST1C) proteins.  SMG7 plays an evolutionarily conserved role in nonsense-mediated RNA decay (NMD). Required for exit from meiosis.  Hypomorphic smg7 alleles render mutant plants sterile by causing an unusual cell-cycle arrest in anaphase II that is characterized by delayed chromosome decondensation and aberrant rearrangement of the meiotic spindle. Disruption of SMG7 causes embryonic lethality.	Telomerase activating protein Est1;(source:Araport11)
AT5G19420.2	protein_coding	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain		Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT5G19430.2	protein_coding	RING/U-box superfamily protein	Encodes a C3HC4-type RING finger E3 ubiquitin ligase of the RING/U-box superfamily whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.	RING/U-box superfamily protein;(source:Araport11)
AT5G19470.2	protein_coding	nudix hydrolase homolog 24		nudix hydrolase homolog 24;(source:Araport11)
AT5G19840.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G19910.2	protein_coding	SOH1 family protein		SOH1 family protein;(source:Araport11)
AT5G19930.2	protein_coding	Protein of unknown function DUF92, transmembrane	PGR is putative plasma membrane glucose- responsive regulator that is expressed in response to glucose stimulation.RNAi knockdown mutant seeds have enhanced sensitivity to glucose and 2-deoxyglucose.	integral membrane protein (Protein of unknown function DUF92, transmembrane);(source:Araport11)
AT5G20040.3	protein_coding	isopentenyltransferase 9	Encodes tRNA isopentenyltransferase AtIPT9.	isopentenyltransferase 9;(source:Araport11)
AT5G20140.2	protein_coding	SOUL heme-binding family protein	Encodes a haem-binding protein, HBP5. HBP5 binds haem and interacts with the haem oxygenase, HY1. Disrupting the binding of HBP5 to HY1 leads to oxidative stress.	SOUL heme-binding family protein;(source:Araport11)
AT5G20165.3	protein_coding			kish-A-like protein;(source:Araport11)
AT5G20250.4	protein_coding	Raffinose synthase family protein	encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. The mRNA is cell-to-cell mobile.	Raffinose synthase family protein;(source:Araport11)
AT5G20320.2	protein_coding	dicer-like 4	Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling.  It binds DRB4, a ds-RNA binding protein.	dicer-like 4;(source:Araport11)
AT5G20450.3	protein_coding			myosin;(source:Araport11)
AT5G20720.3	protein_coding	chaperonin 20	Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES.	chaperonin 20;(source:Araport11)
AT5G20790.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G21040.2	protein_coding	F-box protein 2	Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses. Its expression is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.	F-box protein 2;(source:Araport11)
AT5G21105.3	protein_coding	Plant L-ascorbate oxidase		Plant L-ascorbate oxidase;(source:Araport11)
AT5G21160.2	protein_coding	LA RNA-binding protein	Encodes a protein with sequence similarity to mRNA binding proteins from humans. LARP1a is involved in mRNA degradation in response to heat stress. Upon heat stress LARP1a interacts with XRN4 and appears to be responsible for addressing XRN4 to the polysome. LARP1/XRN4 double mutants are impaired in thermotolerance and lower levels of heat induced RNA turnover.	LA RNA-binding protein;(source:Araport11)
AT5G21160.3	protein_coding	LA RNA-binding protein	Encodes a protein with sequence similarity to mRNA binding proteins from humans. LARP1a is involved in mRNA degradation in response to heat stress. Upon heat stress LARP1a interacts with XRN4 and appears to be responsible for addressing XRN4 to the polysome. LARP1/XRN4 double mutants are impaired in thermotolerance and lower levels of heat induced RNA turnover.	LA RNA-binding protein;(source:Araport11)
AT5G21920.2	protein_coding	YGGT family protein	One of four Arabidopsis homologs of bacterial ymlg proteins.	YGGT family protein;(source:Araport11)
AT5G21930.3	protein_coding	P-type ATPase of Arabidopsis 2	P-Type ATPase, mediates copper transport to chloroplast thylakoid lumen. Required for accumulation of copper-containing plastocyanin in the thylakoid lumen and for effective photosynthetic electron transport	P-type ATPase of Arabidopsis 2;(source:Araport11)
AT5G22040.3	protein_coding			ubiquitin carboxyl-terminal hydrolase;(source:Araport11)
AT5G22080.2	protein_coding	Chaperone DnaJ-domain superfamily protein		Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G22090.2	protein_coding	Protein of unknown function (DUF3049)	EAR1 is a negative regulator of ABA signaling that enhances the activity of all six clade A PP2Cs (ABI1, ABI2, HAB1, HAB2, AHG1, AHG3) by interacting with and releasing the N-terminal autoinhibition of these proteins. EAR1 indirectly affects OST1 activity through enhancing ABI1 activity. The EAR1 141-287 fragment is sufficient for the functioning of EAR1 in ABA responses; the 131-248 region harbors an intrinsically disordered region and only 249-278 can form a predicted regular structure. EAR1 is located in the ER, nuclei, and cytoplasm; ABA signaling promotes the translocation of EAR1 from the ER and/or cytoplasm to the nucleus. Mutations showed that it functions in seed germination, primary root growth, and drought tolerance.	FAF-like protein (DUF3049);(source:Araport11)
AT5G22130.2	protein_coding	mannosyltransferase family protein	member of Glycosyltransferase Family- 50	mannosyltransferase family protein;(source:Araport11)
AT5G22280.3	protein_coding			peptidyl-prolyl cis-trans isomerase G;(source:Araport11)
AT5G22320.2	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G22608.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G22608.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G22620.3	protein_coding	phosphoglycerate/bisphosphoglycerate mutase family protein	encodes a putative 2-carboxy-D-arabinitol 1-phosphate phosphatase	phosphoglycerate/bisphosphoglycerate mutase family protein;(source:Araport11)
AT5G22640.2	protein_coding	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein	EMB1211 is a MORN (multiple membrane  occupation and recognition nexus) motif containing protein involved in embryo development and chloroplast biogenesis. The mRNA is cell-to-cell mobile.	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein;(source:Araport11)
AT5G22820.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G22970.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G23420.2	protein_coding	high-mobility group box 6	Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins.  Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.	high-mobility group box 6;(source:Araport11)
AT5G23770.2	protein_coding	DOMAIN OF UNKNOWN FUNCTION 724 8	Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype	agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8);(source:Araport11)
AT5G23860.2	protein_coding	tubulin beta 8	beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers. The mRNA is cell-to-cell mobile.	tubulin beta 8;(source:Araport11)
AT5G23960.2	protein_coding	terpene synthase 21	Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend.  Strongly expressed in the stigma.	terpene synthase 21;(source:Araport11)
AT5G24040.2	protein_coding	Protein of unknown function (DUF295)		F-box SKIP23-like protein (DUF295);(source:Araport11)
AT5G24060.2	protein_coding	Pentatricopeptide repeat (PPR) superfamily protein		Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G24270.2	protein_coding	Calcium-binding EF-hand family protein	encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B.  Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.	Calcium-binding EF-hand family protein;(source:Araport11)
AT5G24300.2	protein_coding	Glycogen/starch synthases, ADP-glucose type	SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch.	Glycogen/starch synthases, ADP-glucose type;(source:Araport11)
AT5G24314.2	protein_coding	plastid transcriptionally active7		plastid transcriptionally active7;(source:Araport11)
AT5G24350.2	protein_coding		Member of MAG2 complex on the ER that is responsible for efficient transport of seed storage proteins, functions in protein transport between the ER and Golgi apparatus, contain a Zeste?White 10 (ZW10) domain and a Sec39 domain. Required for proper maturation of seed storage proteins.	neuroblastoma-amplified sequence protein;(source:Araport11)
AT5G24352.2	protein_coding	Serine/threonine-protein kinase WNK (With No Lysine)-related		Serine/threonine-protein kinase WNK (With No Lysine)-like protein;(source:Araport11)
AT5G24360.2	protein_coding	inositol requiring 1-1	IRE1A and IRE1B catalyze bZIP60 mRNA splicing, producing the active bZIP60 transcription factor.	inositol requiring 1-1;(source:Araport11)
AT5G24360.3	protein_coding	inositol requiring 1-1	IRE1A and IRE1B catalyze bZIP60 mRNA splicing, producing the active bZIP60 transcription factor.	inositol requiring 1-1;(source:Araport11)
AT5G24600.2	protein_coding	Protein of unknown function, DUF599		TRP-like ion channel protein (Protein of unknown function, DUF599);(source:Araport11)
AT5G24620.2	protein_coding	Pathogenesis-related thaumatin superfamily protein		Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT5G24670.2	protein_coding	Cytidine/deoxycytidylate deaminase family protein	A protein coding gene with unknown function.  The 5?UTR of this gene overlaps with a RNA coding gene TER2.  TER2 (GenBank accession no. HQ401285) encodes a putative template sequence corresponding to 1.5 copies of the Arabidopsis telomere repeat (PNAS 2011, 108:73-78). Natural epiallele in Nok-1, transmission of the epiallele over generations depends only on the selfreinforcing loop between CHROMOMETHYLASE 3 and KRYPTONITE, involving DNA methylated in the CHG context and histone H3 lysine 9 methylation.	Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT5G24740.2	protein_coding	Protein of unknown function (DUF1162)	Encodes a vacuolar sorting protein that interacts with the plant-specific GRAS family transcription factor SHORT-ROOT and acts in a pathway that controls root growth and radial patterning. It provides a connections between gibberellic acid, SHR and PLT signaling in the root.	vacuolar protein sorting-associated protein, putative (DUF1162);(source:Araport11)
AT5G24810.2	protein_coding	ABC1 family protein		ABC1 family protein;(source:Araport11)
AT5G24970.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G25040.2	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G25040.3	protein_coding	Major facilitator superfamily protein		Major facilitator superfamily protein;(source:Araport11)
AT5G25100.2	protein_coding	Endomembrane protein 70 protein family		Endomembrane protein 70 protein family;(source:Araport11)
AT5G25360.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G25450.2	protein_coding	Cytochrome bd ubiquinol oxidase, 14kDa subunit		Cytochrome bd ubiquinol oxidase, 14kDa subunit;(source:Araport11)
AT5G25475.4	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G25560.3	protein_coding	CHY-type/CTCHY-type/RING-type Zinc finger protein		CHY-type/CTCHY-type/RING-type Zinc finger protein;(source:Araport11)
AT5G25560.4	protein_coding	CHY-type/CTCHY-type/RING-type Zinc finger protein		CHY-type/CTCHY-type/RING-type Zinc finger protein;(source:Araport11)
AT5G25570.3	protein_coding			polyamine-modulated factor 1-binding protein;(source:Araport11)
AT5G25620.2	protein_coding	Flavin-binding monooxygenase family protein	Encodes a member of a family of flavin monooxygenases with an important role in auxin biosynthesis. YUC6 possesses an additional thiol-reductase activity that confers drought resistance independently of auxin biosynthesis.	Flavin-binding monooxygenase family protein;(source:Araport11)
AT5G25630.2	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein		Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G26270.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G26610.3	protein_coding	D111/G-patch domain-containing protein		D111/G-patch domain-containing protein;(source:Araport11)
AT5G26742.3	protein_coding	DEAD box RNA helicase (RH3)		DEAD box RNA helicase (RH3);(source:Araport11)
AT5G26749.2	protein_coding	C2H2 and C2HC zinc fingers superfamily protein		C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT5G26850.4	protein_coding	Uncharacterized protein		Uncharacterized protein;(source:Araport11)
AT5G26910.3	protein_coding		Encodes a member of the TRM superfamily, that plays a role in preprophase band formation during plant cell division and controls the robustness of the orientation of that cell division.	GPI-anchored adhesin-like protein;(source:Araport11)
AT5G26920.2	protein_coding	Cam-binding protein 60-like G	Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g).  The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants.  cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.	Cam-binding protein 60-like G;(source:Araport11)
AT5G27030.2	protein_coding	TOPLESS-related 3		TOPLESS-related 3;(source:Araport11)
AT5G27410.2	protein_coding	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT3G05190.1). Note that the At5g27410.2 gene model (TAIR10) has been obsoleted due to the lack of experimental support.	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT5G27450.3	protein_coding	mevalonate kinase	Encodes a protein with mevalonate kinase activity involved in the mevalonate pathway.	mevalonate kinase;(source:Araport11)
AT5G27830.4	protein_coding			folate receptor family protein;(source:Araport11)
AT5G27830.5	protein_coding			folate receptor family protein;(source:Araport11)
AT5G27970.2	protein_coding	ARM repeat superfamily protein		ARM repeat superfamily protein;(source:Araport11)
AT5G28442.1	protein_coding			quinoprotein amine dehydrogenase, beta chain-like;(source:Araport11)
AT5G28500.2	protein_coding			rubisco accumulation factor-like protein;(source:Araport11)
AT5G28840.2	protein_coding	GDP-D-mannose 3',5'-epimerase	Encodes a protein with GDP-D-mannose 3',5'-epimerase activity.  The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose.	GDP-D-mannose 3,5-epimerase;(source:Araport11)
AT5G32440.3	protein_coding	Ubiquitin system component Cue protein		Ubiquitin system component Cue protein;(source:Araport11)
AT5G33210.2	protein_coding	SHI-related sequence 8	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. SRS8 is a putative pseudogene.	SHI-related sequence 8;(source:Araport11)
AT5G33399.1	other_rna			other_RNA;(source:Araport11)
AT5G35160.2	protein_coding	Endomembrane protein 70 protein family		Endomembrane protein 70 protein family;(source:Araport11)
AT5G35330.3	protein_coding	methyl-CPG-binding domain protein 02	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain protein 02;(source:Araport11)
AT5G35360.3	protein_coding	acetyl Co-enzyme a carboxylase biotin carboxylase subunit	Encodes biotin carboxylase subunit (CAC2).	acetyl Co-enzyme a carboxylase biotin carboxylase subunit;(source:Araport11)
AT5G35400.2	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT5G35603.3	protein_coding	Protein of unknown function (DUF3287)		hypothetical protein (DUF3287);(source:Araport11)
AT5G35680.3	protein_coding	Nucleic acid-binding, OB-fold-like protein		Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT5G36001.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G36700.4	protein_coding	2-phosphoglycolate phosphatase 1		2-phosphoglycolate phosphatase 1;(source:Araport11)
AT5G36790.3	protein_coding	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein		Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G37340.3	protein_coding	ZPR1 zinc-finger domain protein		ZPR1 zinc-finger domain protein;(source:Araport11)
AT5G37370.4	protein_coding	PRP38 family protein	encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	PRP38 family protein;(source:Araport11)
AT5G37740.2	protein_coding	Calcium-dependent lipid-binding (CaLB domain) family protein		Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G37850.3	protein_coding	pfkB-like carbohydrate kinase family protein	Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT5G38100.2	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G38212.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G38210;(source:Araport11)
AT5G38460.2	protein_coding	ALG6, ALG8 glycosyltransferase family		ALG6, ALG8 glycosyltransferase family;(source:Araport11)
AT5G38660.2	protein_coding	acclimation of photosynthesis to  environment	mutant has Altered acclimation responses;	acclimation of photosynthesis to environment;(source:Araport11)
AT5G38895.2	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G38895.3	protein_coding	RING/U-box superfamily protein		RING/U-box superfamily protein;(source:Araport11)
AT5G39160.3	protein_coding	RmlC-like cupins superfamily protein		RmlC-like cupins superfamily protein;(source:Araport11)
AT5G39740.2	protein_coding	ribosomal protein L5 B	Encodes a ribosomal protein RPL5B that is involved in ribosome biogenesis and plays a role in organ size control by promoting cell proliferation and preventing compensation in normal leaf development.	ribosomal protein L5 B;(source:Araport11)
AT5G39940.2	protein_coding	FAD/NAD(P)-binding oxidoreductase family protein		FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT5G40240.2	protein_coding	nodulin MtN21 /EamA-like transporter family protein	nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G40550.2	protein_coding	SGF29 tudor-like domain		SGF29 tudor-like domain-containing protein;(source:Araport11)
AT5G40580.3	protein_coding	20S proteasome beta subunit PBB2	Encodes 20S proteasome beta subunit PBB2 (PBB2).	20S proteasome beta subunit PBB2;(source:Araport11)
AT5G40850.2	protein_coding	urophorphyrin methylase 1	Encodes a urophorphyrin III methylase that  catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine. The mRNA is cell-to-cell mobile.	urophorphyrin methylase 1;(source:Araport11)
AT5G41130.2	protein_coding	Esterase/lipase/thioesterase family protein		Esterase/lipase/thioesterase family protein;(source:Araport11)
AT5G41140.2	protein_coding	Myosin heavy chain-related protein		Myosin heavy chain-related protein;(source:Araport11)
AT5G41700.5	protein_coding	ubiquitin conjugating enzyme 8	One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 The mRNA is cell-to-cell mobile.	ubiquitin conjugating enzyme 8;(source:Araport11)
AT5G42080.3	protein_coding	dynamin-like protein	Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching.  Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.	dynamin-like protein;(source:Araport11)
AT5G42092.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G42090;(source:Araport11)
AT5G42370.2	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT5G42540.2	protein_coding	exoribonuclease 2	Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN2 acts as a suppressor of posttranscriptional gene silencing.	exoribonuclease 2;(source:Araport11)
AT5G42620.2	protein_coding	metalloendopeptidases;zinc ion binding		metalloendopeptidase / zinc ion binding protein;(source:Araport11)
AT5G42680.2	protein_coding	Protein of unknown function, DUF617		MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT5G42710.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G42760.2	protein_coding	Leucine carboxyl methyltransferase		Leucine carboxyl methyltransferase;(source:Araport11)
AT5G42770.2	protein_coding	Maf-like protein		Maf-like protein;(source:Araport11)
AT5G42840.2	protein_coding	Cysteine/Histidine-rich C1 domain family protein		Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G42870.2	protein_coding	phosphatidic acid phosphohydrolase 2	The PAH2 gene encodes a phosphatidate phosphohydrolase. Mutant analysis revealed its involvement in galactolipid synthesis pathway, and the membrane lipid remodeling. The pah1pah2 double-mutant showed enhanced Al-susceptibility under low-P conditions, but there was no significant differences in Al tolerance between pah1pah2 and wild type when they were grown in a solution containing 35 &#956;M Pi.	phosphatidic acid phosphohydrolase 2;(source:Araport11)
AT5G43130.2	protein_coding	TBP-associated factor 4		TBP-associated factor 4;(source:Araport11)
AT5G43310.2	protein_coding	COP1-interacting protein-related		COP1-interacting protein-like protein;(source:Araport11)
AT5G43310.3	protein_coding	COP1-interacting protein-related		COP1-interacting protein-like protein;(source:Araport11)
AT5G43310.4	protein_coding	COP1-interacting protein-related		COP1-interacting protein-like protein;(source:Araport11)
AT5G43370.2	protein_coding	phosphate transporter 2	Encodes a phosphate transporter Pht1;2.  Members of the Pht1 family of phosphate transporters include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341) The mRNA is cell-to-cell mobile.	phosphate transporter 2;(source:Araport11)
AT5G43680.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G43810.2	protein_coding	Stabilizer of iron transporter SufD / Polynucleotidyl transferase	Encodes Argonaute10, a member of the EIF2C (elongation initiation factor 2c)/  Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. AGO10 specifically sequesters miR166/165 to regulate shoot apical meristem development.	Stabilizer of iron transporter SufD / Polynucleotidyl transferase;(source:Araport11)
AT5G43900.2	protein_coding	myosin 2	Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner.	myosin 2;(source:Araport11)
AT5G43900.3	protein_coding	myosin 2	Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner.	myosin 2;(source:Araport11)
AT5G43930.4	protein_coding	Transducin family protein / WD-40 repeat family protein		Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G43940.2	protein_coding	GroES-like zinc-binding dehydrogenase family protein	Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility.	GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G43990.5	protein_coding	SET-domain containing protein lysine methyltransferase family protein	Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT5G44180.2	protein_coding	Homeodomain-like transcriptional regulator		Homeodomain-like transcriptional regulator;(source:Araport11)
AT5G44240.2	protein_coding	aminophospholipid ATPase 2	Expression is upregulated in the shoot of cax1/cax3 mutant. The mRNA is cell-to-cell mobile.	aminophospholipid ATPase 2;(source:Araport11)
AT5G44569.1	other_rna			other_RNA;(source:Araport11)
AT5G45020.2	protein_coding	Glutathione S-transferase family protein		Glutathione S-transferase family protein;(source:Araport11)
AT5G45430.2	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G45472.1	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT5G45470	None;(source:Araport11)
AT5G45475.1	other_rna			other_RNA;(source:Araport11)
AT5G45500.2	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT5G45600.2	protein_coding	YEATS family protein	The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei.  It negatively regulates flowering by controlling the H4 acetylation levels in the FLC and FT chromatin.	YEATS family protein;(source:Araport11)
AT5G45720.2	protein_coding	AAA-type ATPase family protein		AAA-type ATPase family protein;(source:Araport11)
AT5G45790.2	protein_coding	Ubiquitin carboxyl-terminal hydrolase family protein		Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT5G45840.2	protein_coding	Leucine-rich repeat protein kinase family protein	Encodes a leucine-rich-repeat RLK that is localized to the plasma membrane of pollen tubes and functions with MIK1/2 as the male receptor of the pollen tube chemo-attractant LURE1.MDIS1 forms a complex with MIK1/2 and binds LURE1.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G46290.3	protein_coding	3-ketoacyl-acyl carrier protein synthase I	Encodes beta-ketoacyl-[acyl carrier protein] synthase I (KASI).  Crucial for fatty acid synthesis.  Plays a role in chloroplast division and embryo development.	3-ketoacyl-acyl carrier protein synthase I;(source:Araport11)
AT5G46360.2	protein_coding	Ca2+ activated outward rectifying K+ channel 3	Encodes AtKCO3, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins.  AtKCO3 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo.	Ca2+ activated outward rectifying K+ channel 3;(source:Araport11)
AT5G46850.2	protein_coding			phosphatidylinositol-glycan biosynthesis class X-like protein;(source:Araport11)
AT5G46850.3	protein_coding			phosphatidylinositol-glycan biosynthesis class X-like protein;(source:Araport11)
AT5G47080.4	protein_coding	casein kinase II  beta chain 1	Regulatory subunit beta of casein kinase II (CK2). purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)). One known substrate of CK2 is Phytochrome Interacting Factor 1 (PIF1). CK2-mediated phosphorylation enhances the light-induced degradation of PIF1 to promote photomorphogenesis.	casein kinase II beta chain 1;(source:Araport11)
AT5G47430.3	protein_coding	DWNN domain, a CCHC-type zinc finger		DWNN domain, a CCHC-type zinc finger;(source:Araport11)
AT5G47620.4	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G47740.2	protein_coding	Adenine nucleotide alpha hydrolases-like superfamily protein		Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT5G47900.7	protein_coding	Protein of unknown function (DUF1624)		heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G48220.3	protein_coding	Aldolase-type TIM barrel family protein		Aldolase-type TIM barrel family protein;(source:Araport11)
AT5G48310.2	protein_coding		Protein of unknown function that may be involved in stress response. Strongly expressed in vascular tissues.Mutants are ABA- insensitive.	portal protein;(source:Araport11)
AT5G48340.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G48412.1	other_rna			other_RNA;(source:Araport11)
AT5G48550.2	protein_coding	F-box associated ubiquitination effector family protein		F-box associated ubiquitination effector family protein;(source:Araport11)
AT5G48600.2	protein_coding	structural maintenance of chromosome 3	member of SMC subfamily	structural maintenance of chromosome 3;(source:Araport11)
AT5G48630.2	protein_coding	Cyclin family protein		Cyclin family protein;(source:Araport11)
AT5G48780.2	protein_coding	disease resistance protein (TIR-NBS class)		disease resistance protein (TIR-NBS class);(source:Araport11)
AT5G48820.2	protein_coding	inhibitor/interactor with cyclin-dependent kinase	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle.  Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.	inhibitor/interactor with cyclin-dependent kinase;(source:Araport11)
AT5G48830.2	protein_coding			phosphoglycolate phosphatase;(source:Araport11)
AT5G49030.3	protein_coding	tRNA synthetase class I (I, L, M and V) family protein		tRNA synthetase class I (I, L, M and V) family protein;(source:Araport11)
AT5G49070.2	protein_coding	3-ketoacyl-CoA synthase 21	Encodes KCS21, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 21;(source:Araport11)
AT5G49152.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G49150;(source:Araport11)
AT5G49350.2	protein_coding	Glycine-rich protein family		Glycine-rich protein family;(source:Araport11)
AT5G49470.3	protein_coding	PAS domain-containing protein tyrosine kinase family protein	Encodes a protein with similarity to RAF MAP Kinase that is expressed in most plant tissues. Based on loss of function and gain of function phenotypes, RAF10 appears to be involved in ABA response.	PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT5G49470.4	protein_coding	PAS domain-containing protein tyrosine kinase family protein	Encodes a protein with similarity to RAF MAP Kinase that is expressed in most plant tissues. Based on loss of function and gain of function phenotypes, RAF10 appears to be involved in ABA response.	PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT5G49620.2	protein_coding	myb domain protein 78	Member of the R2R3 factor gene family.	myb domain protein 78;(source:Araport11)
AT5G50020.2	protein_coding	DHHC-type zinc finger family protein		DHHC-type zinc finger family protein;(source:Araport11)
AT5G50375.2	protein_coding	cyclopropyl isomerase	Converts pentacyclic cyclopropyl sterols to conventional tetracyclic sterols. CPI1 function during and just after division and  support gravitropism by establishing polar PIN2 localization. Required for endocytosis of PIN2	cyclopropyl isomerase;(source:Araport11)
AT5G50565.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G50665.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G50740.4	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G50870.2	protein_coding	ubiquitin-conjugating enzyme 27		ubiquitin-conjugating enzyme 27;(source:Araport11)
AT5G51040.3	protein_coding		Encodes succinate dehydrogenase assembly factor 2 (SDHAF2), a low abundance mitochondrial protein needed for assembly and activity of mitochondrial complex II and for normal root elongation.Sdhaf2 knockdown line showed lowered SDH1 protein abundance, lowered maximal SDH activity and less protein-bound FAD at the molecular mass of SDH1.	succinate dehydrogenase assembly factor;(source:Araport11)
AT5G51110.2	protein_coding	Transcriptional coactivator/pterin dehydratase	Encodes a protein involved in Rubisco assembly that also mediates Abscisic acid-dependent stress response. It is a ubiquitination target of the intracellular E3 ligase SDIR1. It selectively regulates the expression of the downstream basic region/leucine zipper motif transcription factor gene ABA-INSENSITIVE5, rather than ABA-RESPONSIVE ELEMENTS BINDING FACTOR3 (ABF3) or ABF4, to regulate ABA-mediated seed germination and the plant salt response.	Transcriptional coactivator/pterin dehydratase;(source:Araport11)
AT5G51120.2	protein_coding	polyadenylate-binding protein 1	Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.	polyadenylate-binding protein 1;(source:Araport11)
AT5G51120.3	protein_coding	polyadenylate-binding protein 1	Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.	polyadenylate-binding protein 1;(source:Araport11)
AT5G51140.2	protein_coding	Pseudouridine synthase family protein		Pseudouridine synthase family protein;(source:Araport11)
AT5G51410.3	protein_coding	LUC7 N_terminus domain-containing protein		LUC7 N terminus domain-containing protein;(source:Araport11)
AT5G51450.2	protein_coding	RPM1 interacting protein 3	Encodes RING-finger type ubiquitin ligases.	RPM1 interacting protein 3;(source:Araport11)
AT5G51630.3	protein_coding	Disease resistance protein (TIR-NBS-LRR class) family		Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G51870.3	protein_coding	AGAMOUS-like 71	Encodes a MADS-box transcription factor involved in floral transition.	AGAMOUS-like 71;(source:Araport11)
AT5G52200.2	protein_coding	phosphoprotein phosphatase inhibitors	Encodes an inhibitor of protein phosphatase one (PP1).	phosphoprotein phosphatase inhibitor;(source:Araport11)
AT5G52220.2	protein_coding			chromosome transmission fidelity-like protein;(source:Araport11)
AT5G52230.2	protein_coding	methyl-CPG-binding domain protein 13	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain protein 13;(source:Araport11)
AT5G52240.2	protein_coding	membrane steroid binding protein 1	Encodes a protein with similarity to  progesterone-binding proteins in animals. Has been shown to bind steroids in vitro. Expressed in aerial portions of the plant excluding mature flowers and siliques. Antisense experiments suggest a role in inhibition of hypocotyl cell elongation. Expression is suppressed light grown seedlings transferred to the dark. The mRNA is cell-to-cell mobile.	membrane steroid binding protein 1;(source:Araport11)
AT5G52480.2	protein_coding	RNI-like superfamily protein		RNI-like superfamily protein;(source:Araport11)
AT5G52530.3	protein_coding	dentin sialophosphoprotein-related		dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G52580.2	protein_coding	RabGAP/TBC domain-containing protein		RabGAP/TBC domain-containing protein;(source:Araport11)
AT5G52890.2	protein_coding	AT hook motif-containing protein		AT hook motif-containing protein;(source:Araport11)
AT5G53060.2	protein_coding	RNA-binding KH domain-containing protein	Encodes a KH domain-containing putative RNA-binding protein RCF3.  Functions as a upstream regulator for heat stress-responsive gene expression and thermotolerance and mediation of jasmonate signalling.Also shown to interact with HYL1 and is a component of the nuclear dicing body and to function in primary miRNA processing.	RNA-binding KH domain-containing protein;(source:Araport11)
AT5G53120.6	protein_coding	spermidine synthase 3	encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.	spermidine synthase 3;(source:Araport11)
AT5G53300.4	protein_coding	ubiquitin-conjugating enzyme 10	Encodes a ubiquitin conjugating enzyme.	ubiquitin-conjugating enzyme 10;(source:Araport11)
AT5G53460.2	protein_coding	NADH-dependent glutamate synthase 1	NADH-dependent glutamate synthase The mRNA is cell-to-cell mobile.	NADH-dependent glutamate synthase 1;(source:Araport11)
AT5G53460.3	protein_coding	NADH-dependent glutamate synthase 1	NADH-dependent glutamate synthase The mRNA is cell-to-cell mobile.	NADH-dependent glutamate synthase 1;(source:Araport11)
AT5G53490.3	protein_coding	Tetratricopeptide repeat (TPR)-like superfamily protein	thylakoid lumenal 17.4 kDa protein, chloroplast, identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}. Putative pentapeptide protein.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G53550.2	protein_coding	YELLOW STRIPE like 3		YELLOW STRIPE like 3;(source:Araport11)
AT5G53635.1	protein_coding	F-box/RNI-like/FBD-like domains-containing protein		F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G53860.4	protein_coding	embryo defective 2737	Encodes a plant-specific protein with a domain similar to the central cysteine-rich domain of DnaJ proteins. It is involved in chloroplast and leaf development.	embryo defective 2737;(source:Araport11)
AT5G53860.5	protein_coding	embryo defective 2737	Encodes a plant-specific protein with a domain similar to the central cysteine-rich domain of DnaJ proteins. It is involved in chloroplast and leaf development.	embryo defective 2737;(source:Araport11)
AT5G54250.3	protein_coding	cyclic nucleotide-gated cation channel 4	member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.	cyclic nucleotide-gated cation channel 4;(source:Araport11)
AT5G54290.2	protein_coding	cytochrome c biogenesis protein family	Encodes CcdA, a thylakoid membrane protein required for the transfer of reducing equivalents from stroma to thylakoid lumen.	cytochrome c biogenesis protein family;(source:Araport11)
AT5G54500.2	protein_coding	flavodoxin-like quinone reductase 1	Encodes a flavin mononucleotide-binding flavodoxin-like quinone reductase that is a primary auxin-response gene.	flavodoxin-like quinone reductase 1;(source:Araport11)
AT5G54750.2	protein_coding	Transport protein particle (TRAPP) component	Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	Transport protein particle (TRAPP) component;(source:Araport11)
AT5G54760.3	protein_coding	Translation initiation factor SUI1 family protein		Translation initiation factor SUI1 family protein;(source:Araport11)
AT5G55060.2	protein_coding			Rab3 GTPase-activating protein catalytic subunit;(source:Araport11)
AT5G55230.2	protein_coding	microtubule-associated proteins 65-1	Binds and bundles microtubules. Plays a role in stabilizing anti-parallel microtubules  in the central spindle at anaphase to early cytokinesis but is not essential at the midline of the phragmoplast at later stages. The timing with which the MAP65-1 was targeted to  the spindle appears to be regulated by a phosphorylation sensitive  switch. Enhances microtubule polymerization, promotes nucleation and stabilizes microtubules against cold treatment and dilution.	microtubule-associated proteins 65-1;(source:Araport11)
AT5G55300.2	protein_coding	DNA topoisomerase I alpha	Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.	DNA topoisomerase I alpha;(source:Araport11)
AT5G55300.3	protein_coding	DNA topoisomerase I alpha	Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.	DNA topoisomerase I alpha;(source:Araport11)
AT5G55390.2	protein_coding	ENHANCED DOWNY MILDEW 2	Encodes EDM2 (enhanced downy mildew 2).  The predicted protein bears typical features of transcriptional regulators.  EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region.  Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif.  Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1).  EDM2 may function as a direct or indirect regulator of RPP7 expression.	ENHANCED DOWNY MILDEW 2;(source:Araport11)
AT5G55550.4	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G55600.3	protein_coding	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein		Agenet and bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT5G55670.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G55700.2	protein_coding	beta-amylase 4	In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role.	beta-amylase 4;(source:Araport11)
AT5G55730.2	protein_coding	FASCICLIN-like arabinogalactan 1	Encodes fasciclin-like arabinogalactan-protein 1 (Fla1). fla1 mutants show defects in shoot regeneration. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan 1;(source:Araport11)
AT5G55810.2	protein_coding	nicotinate/nicotinamide mononucleotide adenyltransferase	encodes a bi-functional enzyme that expresses both nicotinamide-nucleotide adenylyltransferase (2.7.7.1) and nicotinate-nucleotide adenylyltransferase (2.7.7.18)activity.	nicotinate/nicotinamide mononucleotide adenyltransferase;(source:Araport11)
AT5G55850.3	protein_coding	RPM1-interacting protein 4 (RIN4) family protein	NOI protein	RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT5G56030.2	protein_coding	heat shock protein 81-2	A member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. Interacts with HsfA1d in the cytosol and the nucleus and negatively regulates HsfA1d. Did not bind to  AtHsfA4c. The mRNA is cell-to-cell mobile.	heat shock protein 81-2;(source:Araport11)
AT5G56240.2	protein_coding			hapless protein;(source:Araport11)
AT5G56530.2	protein_coding	Protein of Unknown Function (DUF239)		tRNA-splicing ligase (DUF239);(source:Araport11)
AT5G57150.4	protein_coding	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G57170.2	protein_coding	Tautomerase/MIF superfamily protein		Tautomerase/MIF superfamily protein;(source:Araport11)
AT5G57300.3	protein_coding	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G57350.2	protein_coding	H(+)-ATPase 3	member of Plasma membrane H+-ATPase family	H[+]-ATPase 3;(source:Araport11)
AT5G57410.3	protein_coding	Afadin/alpha-actinin-binding protein	Encodes a microtubule-associated protein.	Afadin/alpha-actinin-binding protein;(source:Araport11)
AT5G57565.3	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G57565.4	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G57565.5	protein_coding	Protein kinase superfamily protein		Protein kinase superfamily protein;(source:Araport11)
AT5G58180.2	protein_coding	Synaptobrevin family protein	member of YKT6 Gene Family	Synaptobrevin family protein;(source:Araport11)
AT5G58200.2	protein_coding	Calcineurin-like metallo-phosphoesterase superfamily protein		Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT5G58340.2	protein_coding	myb-like HTH transcriptional regulator family protein		myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT5G59130.2	protein_coding	Subtilase family protein		Subtilase family protein;(source:Araport11)
AT5G59470.2	protein_coding	Mannose-P-dolichol utilization defect 1 protein		Mannose-P-dolichol utilization defect 1 protein;(source:Araport11)
AT5G59613.2	protein_coding			ATP synthase;(source:Araport11)
AT5G59750.2	protein_coding	DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II		monofunctional riboflavin biosynthesis protein RIBA 3;(source:Araport11)
AT5G59950.5	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G60040.2	protein_coding	nuclear RNA polymerase C1	Encodes a subunit of RNA polymerase III (aka RNA polymerase C).	nuclear RNA polymerase C1;(source:Araport11)
AT5G60100.2	protein_coding	pseudo-response regulator 3	Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.	pseudo-response regulator 3;(source:Araport11)
AT5G60100.3	protein_coding	pseudo-response regulator 3	Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.	pseudo-response regulator 3;(source:Araport11)
AT5G60120.2	protein_coding	target of early activation tagged (EAT) 2		target of early activation tagged (EAT) 2;(source:Araport11)
AT5G60130.2	protein_coding	AP2/B3-like transcriptional factor family protein		AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G60170.2	protein_coding	RNA binding (RRM/RBD/RNP motifs) family protein		RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G60210.2	protein_coding	ROP interactive partner 5	Encodes RIP5 (ROP interactive partner 5), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants).	ROP interactive partner 5;(source:Araport11)
AT5G60335.1	protein_coding	Thioesterase superfamily protein	Encodes the mitochondria-localized 3-hydroxyacyl-acyl carrier protein (ACP) dehydratase (mtHD) component of the mitochondrial fatty acid synthase (mtFAS) system. It catalyzes the third of the four  iterative reactions that constitute the mtFAS cycle. Additionally, it supports the assembly of lipid A-like molecules and has an unexpected function in maintaining the morphology of  chloroplastic starch granules.	hydroxyacyl-thioester dehydratase type-like protein;(source:Araport11)
AT5G60640.3	protein_coding	PDI-like 1-4	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.	PDI-like 1-4;(source:Araport11)
AT5G60800.2	protein_coding	Heavy metal transport/detoxification superfamily protein 		Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G61060.2	protein_coding	histone deacetylase 5	Encodes a member of the histone deacetylase family.	histone deacetylase 5;(source:Araport11)
AT5G61140.2	protein_coding	U5 small nuclear ribonucleoprotein helicase	Encodes a predicted protein with 30% identity with MER3/RCK. Similar to yast Brr2p DEAD/DExH box ATP-dependent RNA helicase.	U5 small nuclear ribonucleoprotein helicase;(source:Araport11)
AT5G61200.3	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT5G61240.2	protein_coding	Leucine-rich repeat (LRR) family protein		Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G61530.3	protein_coding	small G protein family protein / RhoGAP family protein		small G protein family protein / RhoGAP family protein;(source:Araport11)
AT5G61550.2	protein_coding	U-box domain-containing protein kinase family protein		U-box domain-containing protein kinase family protein;(source:Araport11)
AT5G61560.2	protein_coding	U-box domain-containing protein kinase family protein		U-box domain-containing protein kinase family protein;(source:Araport11)
AT5G61910.4	protein_coding	DCD (Development and Cell Death) domain protein		DCD (Development and Cell Death) domain protein;(source:Araport11)
AT5G62000.4	protein_coding	auxin response factor 2	Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation. The mRNA is cell-to-cell mobile.	auxin response factor 2;(source:Araport11)
AT5G62130.2	protein_coding	Per1-like family protein		Per1-like family protein;(source:Araport11)
AT5G62165.4	protein_coding	AGAMOUS-like 42	Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT5G62165.5	protein_coding	AGAMOUS-like 42	Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT5G62230.2	protein_coding	ERECTA-like 1	Encodes a receptor-like kinase that, together with ER and ERL2 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. Along with erl2 functionally compensates for loss of erecta during integument development. Its transcript levels change after inducing MUTE expression in a mute background.	ERECTA-like 1;(source:Araport11)
AT5G62270.2	protein_coding			ribosomal protein L20;(source:Araport11)
AT5G62570.2	protein_coding	Calmodulin binding protein-like		Calmodulin binding protein-like protein;(source:Araport11)
AT5G62760.3	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G62760.4	protein_coding	P-loop containing nucleoside triphosphate hydrolases superfamily protein		P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G62790.2	protein_coding	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. Arabidopsis  DXR is targeted to plastids and localizes into chloroplasts of leaf cells. DXR knockout or strongly silenced lines have a seedling lethal, albino phenotype. Transgenic, partially silenced lines expressing 35S:DXR have a variegated phenotype.	1-deoxy-D-xylulose 5-phosphate reductoisomerase;(source:Araport11)
AT5G62865.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G62950.3	protein_coding	RNA polymerase II, Rpb4, core protein		RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT5G63050.2	protein_coding	embryo defective 2759		embryo defective 2759;(source:Araport11)
AT5G63260.2	protein_coding	Zinc finger C-x8-C-x5-C-x3-H type family protein		Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G63370.4	protein_coding	Protein kinase superfamily protein	CDKG1 interacts with the splicing factor RSZ33 to regulate proper splicing of Cals5 Pre-mRNA.	Protein kinase superfamily protein;(source:Araport11)
AT5G63460.3	protein_coding	SAP domain-containing protein	Enhances ABA response and plant drought tolerance by modulating the stability and localization of c2-domain ABA-related proteins.LOT1 regulates plant tolerance to drought stress by affecting ABA signaling through regulating the stability and dynamic localization of CAR9 (PMID:31102784).	SAP domain-containing protein;(source:Araport11)
AT5G63460.4	protein_coding	SAP domain-containing protein	Enhances ABA response and plant drought tolerance by modulating the stability and localization of c2-domain ABA-related proteins.LOT1 regulates plant tolerance to drought stress by affecting ABA signaling through regulating the stability and dynamic localization of CAR9 (PMID:31102784).	SAP domain-containing protein;(source:Araport11)
AT5G63510.2	protein_coding	gamma carbonic anhydrase like 1	Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.	gamma carbonic anhydrase like 1;(source:Araport11)
AT5G63670.2	protein_coding	SPT4 homolog 2		SPT4 homolog 2;(source:Araport11)
AT5G63880.2	protein_coding	SNF7 family protein		SNF7 family protein;(source:Araport11)
AT5G63960.2	protein_coding	DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases	Encodes the catalytic subunits of DNA polymerase &#948;, which is involved in the deposition of epigenetic marks.	DNA polymerase delta subunit 1;(source:Araport11)
AT5G64390.3	protein_coding	RNA-binding KH domain-containing protein	encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl. The mRNA is cell-to-cell mobile.	RNA-binding KH domain-containing protein;(source:Araport11)
AT5G64460.8	protein_coding	Phosphoglycerate mutase family protein		Phosphoglycerate mutase family protein;(source:Araport11)
AT5G64470.3	protein_coding	Plant protein of unknown function (DUF828)	Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT5G64910.2	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT5G64990.2	protein_coding	RAB GTPase homolog H1A		RAB GTPase homolog H1A;(source:Araport11)
AT5G65070.3	protein_coding	K-box region and MADS-box transcription factor family protein 	Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G65240.2	protein_coding	Leucine-rich repeat protein kinase family protein		Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G65420.2	protein_coding	CYCLIN D4;1	Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.	CYCLIN D4;(source:Araport11)
AT5G65420.3	protein_coding	CYCLIN D4;1	Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.	CYCLIN D4;(source:Araport11)
AT5G65430.3	protein_coding	general regulatory factor 8	member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1	general regulatory factor 8;(source:Araport11)
AT5G65440.3	protein_coding			transmembrane protein;(source:Araport11)
AT5G65685.2	protein_coding	UDP-Glycosyltransferase superfamily protein		UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G65700.2	protein_coding	Leucine-rich receptor-like protein kinase family protein	Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. The mRNA is cell-to-cell mobile.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT5G65740.4	protein_coding	zinc ion binding		zinc ion binding protein;(source:Araport11)
AT5G65770.3	protein_coding	little nuclei4	Encodes a protein that localizes to the nuclear periphery and affects nuclear morphology. Member of a small gene family in Arabidopsis containing 4 proteins (LNC1-4 or CRWN 1-4) with redundant functions in protection from oxidative damage, control of nuclear morphology and degradation of ABI5.	little nuclei4;(source:Araport11)
AT5G65780.2	protein_coding	branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)	Encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant. Note that the AT5G65780.2 gene model (TAIR10) has been obsoleted due to the lack of experimental support. The mRNA is cell-to-cell mobile.	branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);(source:Araport11)
AT5G65930.3	protein_coding	kinesin-like calmodulin-binding protein (ZWICHEL)	encodes a novel member of the kinesin superfamily of motor proteins. recessive mutations have reduced number of trichome branches.	kinesin-like calmodulin-binding protein (ZWICHEL);(source:Araport11)
AT5G66010.2	protein_coding	RNA-binding (RRM/RBD/RNP motifs) family protein		RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G66060.2	protein_coding	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G66170.3	protein_coding	sulfurtransferase 18	Encodes a thiosulfate sulfurtransferase/rhodanese.	sulfurtransferase 18;(source:Araport11)
AT5G66230.2	protein_coding	Chalcone-flavanone isomerase family protein		Chalcone-flavanone isomerase family protein;(source:Araport11)
AT5G66240.3	protein_coding	Transducin/WD40 repeat-like superfamily protein	Encodes a WD40-repeat protein that interacts with the E3 Cullin Ring Ligase subunit DDB1a and is involved in secondary wall modification and thickening by regulating the degradation of specific proteins. RNAi-mediated silencing results in anther indehiscence and infertility.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G66250.4	protein_coding	kinectin-related		kinectin-like protein;(source:Araport11)
AT5G66530.2	protein_coding	Galactose mutarotase-like superfamily protein		Galactose mutarotase-like superfamily protein;(source:Araport11)
AT5G66600.4	protein_coding	Protein of unknown function, DUF547		electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G66610.2	protein_coding	DA1-related protein 7		DA1-related protein 7;(source:Araport11)
AT5G66640.2	protein_coding	DA1-related protein 3		DA1-related protein 3;(source:Araport11)
AT5G67240.2	protein_coding	small RNA degrading nuclease 3		small RNA degrading nuclease 3;(source:Araport11)
AT5G67265.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G67500.2	protein_coding	voltage dependent anion channel 2	Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol. The mRNA is cell-to-cell mobile.	voltage dependent anion channel 2;(source:Araport11)
BRR1	unknown			
BRR53	unknown			
GC12	unknown			
OSR4	unknown			
OXHS1	unknown			
XET16	unknown			
EF3	unknown			
EF4	unknown			
HY15	unknown			
SV1	unknown			
CDR3	unknown			
TER2	unknown		Encodes a noncoding RNA TER2. TER2 negatively regulates telomerase activity. Induced by DNA damage.	
FSQ1	unknown			
HAS	unknown		A genetic locus that affects leaf and cotyledon morphogenesis.	
AtADT3	unknown			
AtCENH3	unknown			
LIKE36	unknown			
DS4	unknown			
GJK01	unknown			
SOC2	unknown			
SSM4	unknown			
BOX32	unknown			
HAS1	unknown		Genetic locus located between 3.157–3.651 Mb on chromosome 3.	
HAS3	unknown		Genetic locus located between 10.366–10.609 Mb on chromosome 4.	
AtARF12	unknown			
AtARF20	unknown			
MKO1	unknown			
CGF14	unknown			
ALAC2	unknown			
ARFA1	unknown			
AtABCI20	unknown			
AtLTO1	unknown			
AtMED13	unknown			
AtPLA1	unknown			
CHXC1	unknown			
CYPB90	unknown			
DAF3	unknown			
DAF4	unknown			
DDH1	unknown			
DFRP1	unknown			
DFRP2	unknown			
FLIP4	unknown			
FME1	unknown			
GFP8	unknown			
GUL2	unknown			
JMJ8	unknown			
NTAN1	unknown			
POB2	unknown			
PRT7	unknown			
PRT8	unknown			
RIG2	unknown			
RPA10	unknown			
RUG8	unknown			
RUL3	unknown			
SAUR61	unknown			
SOM42	unknown			
SSP6	unknown			
STAJ8	unknown			
TIA1	unknown			
TIL3	unknown			
UBR4	unknown			
UBR7	unknown			
CGI58	unknown			
LLP12	unknown			
DAM4	unknown			
LB1	unknown			
LB2	unknown			
PTM5	unknown			
GRX1	unknown			
TR337	unknown			
WIND2	unknown			
MPP2	unknown			
WR1	unknown			
GPS2	unknown			
GPS3	unknown			
FLIP84	unknown			
PL2	unknown			
KOD	unknown			
HT5	unknown			
IB4	unknown			
DSP2	unknown			
AtCYP18	unknown			
AQP11	unknown			
AQP3	unknown			
CTR17	unknown			
LIKE9	unknown			
AMOS2	unknown		This is a novel locus controlling cation homeostasis under NH(4) (+) stress.	Positioned in a 16-cM region at the top of chromosome 1, between the markers CER459662 and 464650.
AAE9	unknown			
YA1	unknown			
YA9	unknown			
ESA1	unknown			
PP16	unknown			
RABA6	unknown			
BTH4	unknown			
MAPK1	unknown			
YA2	unknown			
AHR1	unknown			
AtLYK2	unknown			
AtLYP1	unknown			
NHR1	unknown			
APPR2	unknown			
AtZIP60	unknown			
MD2	unknown			
SUA41	unknown			
DHM1	unknown		Genetic locus where mutants are hypersensitive to N-isobutyl decanamide, a small lipid amide involved in plant morphogenetic processes.	
PI4	unknown			
SSM7	unknown			
AtSKIP1	unknown			
AtLSM2	unknown			
CSP4	unknown			
YC1	unknown			
IOP1	unknown			
AtCSDP2	unknown			
AtCSDP4	unknown			
PSK7	unknown			
CP7	unknown			
DUF221	unknown			
GF19	unknown			
AtLFG5	unknown			
LC4	unknown			
PRP6	unknown			
STAG3	unknown			
ZMM19	unknown			
EFA6	unknown			
YB7	unknown			
RDD1	unknown			
RINT1	unknown			
AtLHCB1	unknown			
AtFKBP16	unknown			
NRE43	unknown			
AtSRO1	unknown			
AtSRO5	unknown			
BEC5	unknown			
KT3	unknown			
LIKE16	unknown			
MADS4	unknown			
NXH1	unknown			
RBP11	unknown			
RD10	unknown			
SLB1	unknown			
SLB2	unknown			
TLR7	unknown			
YA3	unknown			
YA8	unknown			
YUAN1	unknown			
AIA11	unknown			
AIC3	unknown			
AIG4	unknown			
AtCYP21	unknown			
EGM1	unknown			
GLH1	unknown		Encodes a genetic locus that is involved in trichome papillae formation. The locus has been mapped to chromosome 1 between markers M235 and ciw12.	
GLH3	unknown		Encodes a genetic locus that is involved in trichome papillae formation. The locus has been mapped to chromosome 5 between markers K10D11 and MPI10.	
GLH4	unknown		Encodes a genetic locus that is involved in trichome papillae formation and cellulose deposition. The locus has been mapped to chromosome 2 between markers nga1126 and T6A23.	
MERE1	unknown			
RFL9	unknown			
YA10	unknown			
OMTN1	unknown			
SUP1	unknown			
AtKSS12	unknown			
DML4	unknown			
DML5	unknown			
MT6	unknown			
SDF1	unknown			
SDK1	unknown			
PMI11	unknown		QTL	
SLC15	unknown			
AtTRB21	unknown			
IMB211	unknown			
MYB01	unknown			
NAC01	unknown			
NAC02	unknown			
NAC03	unknown			
NAC04	unknown			
NAC05	unknown			
DZA045	unknown			
GFP1	unknown			
AtCK2	unknown			
SNO1	unknown			
YA11	unknown			
YA12	unknown			
YA7	unknown			
YB10	unknown			
YB11	unknown			
YB13	unknown			
YB14	unknown			
YB8	unknown			
MED4	unknown			
RING2	unknown			
TL20	unknown			
DPB3	unknown			
ER2	unknown			
YC10	unknown			
DDX3	unknown			
DDX5	unknown			
BOX13	unknown			
ND0	unknown			
JDP1	unknown			
JDP11	unknown			
JDP157	unknown			
JDP169	unknown			
OCH3	unknown			
SPSS16	unknown			
YC11	unknown			
AS9	unknown			
BP25	unknown			
CHMP3	unknown			
CHMP5	unknown			
LIKE20	unknown			
UGT85	unknown		gene family	
AT2G47584.1	protein_coding		Regulatory peptide encoded by the primary transcript (pri-miR164a) of the microRNA miR164a. Enhances the accumulation of its corresponding mature miRNA. Probably functions as a transcriptional activator of its corresponding pri-miRNA. From UniProt P164A_ARATH.	
TRP120	unknown			
TRP32	unknown			
TRP47	unknown			
CYP18	unknown			
HSO4	unknown			
UG2	unknown			
YC8	unknown			
CD20	unknown			
GECO1	unknown			
GS115	unknown			
HSR1	unknown		From the patent file referenced in the paper.. but no match to the genome.  >GY530764.1 Sequence 34 from patent US 8067558  CCNTGCTGGTTGNNAGTGCATCCCCCATCTTTTTGCACTCGATGGAGTGGGCCACCCAAACGCGGGACGC  CAATCATTGGCTGATATGGGGACTCCCATTCTCAGGCTTCGTTTACACAAAAATTAGGACACACCCNTGT  GGGGAGGCANGATGCTGCGTTAAGTNGGCGGACGATATCATNTTCAGAAAGGAGGGGGGATGCACCTCGT  TGAAGTG	
IAA03	unknown			
IAA04	unknown			
LESS1	unknown			
LIKE17	unknown			
NAC29	unknown			
AT1G01184.1	protein_coding		miPEP165a is an 18 amino acid peptide encoded by the primary transcript of miR165a.Application of miPEP165a increased the accumulation of miR165a transcripts and acts at the level of transcription. It is expressed in the root endodermis. Over expression leads to an increase in root length.	
AT4G17787.1	protein_coding		miPEP160b is an 5 amino acid peptide encoded by the primary transcript of miR160b. Overexpression of miPEP160b increased the accumulation of miR160b transcripts.	
AT4G23712.1	protein_coding		miPEP319a is an 50 amino acid peptide encoded by the primary transcript of miR319a. Overexpression of miPEP319a increased the accumulation of miR319a transcripts.	
TARANI	unknown		TNI is a genetically defined locus on chromosome 3 that maps to an interval 0.4 Mb, between the TNI3C7.09 and TNI3C7.5 markers. Identified as a mutation that affects leaf shape. Leaves are cup shaped due to abnormal cell proliferation in the leaf lamina. The phenotype can be partially rescued by reduction of GA.	
AtPGL1	unknown			
COR14	unknown			
HSDH1	unknown			
HSDH2	unknown			
SCL4	unknown			
SMRE3	unknown			
UX1	unknown			
ARL3	unknown			
GTL2	unknown			
ABRC3	unknown			
APIP6	unknown			
AtLSG1	unknown			
AG91	unknown			
AtCIPK7	unknown			
AtER15	unknown			
RICH45	unknown			
CP122	unknown			
VPGL1	unknown			
AtSH4	unknown			
HPK4	unknown			
MASS2	unknown			
YC6	unknown			
YC7	unknown			
MYB133	unknown			
LIKE22	unknown			
GX5	unknown			
LDS1	unknown			
TDIF2	unknown			
DRA2	unknown			
PO43	unknown			
ETV1	unknown			
IL8	unknown			
TWD40	unknown			
AtER014	unknown			
NAC69	unknown			
HDA702	unknown			
YB15	unknown			
FOA2	unknown			
OE5	unknown			
WRK46	unknown			
OX6	unknown			
OX7	unknown			
PCF20	unknown			
SDB123	unknown			
AtROP66	unknown			
CSPF73	unknown			
MEF26	unknown			
NBS2	unknown			
ROP66	unknown			
SALI3	unknown			
SPG1	unknown			
AtSE1	unknown			
AtSNC1	unknown			
ES16	unknown		chemical compound	
JS1	unknown			
AT5G48110-Cvi	protein_coding		Encodes a functional class I diterpene synthase. The Col variant is non- functional due to various deletions and substitutions. TPS20-Cvi is required for production of dolabellane compounds in the root.	
AtPDIL1	unknown			
AT1G47370-Ag0	protein_coding		RBA1 variant in Ag0 background is a TIR-only receptor protein that binds to the  bacterial type III effector protein HopBA. The Col-0 variant, which is not expressed,  is likely a psuedogene and more highly methylated than the Ag0 variant which is expressed. RBA1-Ag0 forms homodimers which are required for function as a cell death regulator.	
AFBA1	unknown			
YNO2	unknown			
RLK27	unknown			
HISN6	unknown			
YA5	unknown			
FBX92	unknown			
AT2G08655.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G34180;(source:Araport11)
AT2G14880.2	protein_coding			SWIB/MDM2 domain superfamily protein;(source:Araport11)
AT2G14880.3	protein_coding			SWIB/MDM2 domain superfamily protein;(source:Araport11)
AT3G05385.1	long_noncoding_rna			None;(source:Araport11)
AT2G21595.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G04643.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G08120;(source:Araport11)
AT4G06930.1	long_noncoding_rna			None;(source:Araport11)
AT4G17310.6	protein_coding			hypothetical protein;(source:Araport11)
AT3G20960.2	protein_coding			cytochrome P450, family 705, subfamily A, polypeptide 33;(source:Araport11)
AT3G06355.1	long_noncoding_rna			None;(source:Araport11)
AT1G05870.8	protein_coding			hypothetical protein (DUF1685);(source:Araport11)
AT2G06675.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G04643.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G08120;(source:Araport11)
AT1G04487.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G06650;(source:Araport11)
AT2G41600.6	protein_coding			Mitochondrial glycoprotein family protein;(source:Araport11)
AT3G03915.1	long_noncoding_rna			None;(source:Araport11)
AT5G19540.2	protein_coding		DY1 is a novel nuclear encoded protein that is imported into the chloroplast stroma. Mutants have reduced pigmentation and somewhat abnormal thylakoid membranes.	thermosome subunit gamma;(source:Araport11)
AT1G24440.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G25230.2	protein_coding			Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT5G07785.1	long_noncoding_rna			None;(source:Araport11)
AT3G11500.2	protein_coding			Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT2G07900.1	long_noncoding_rna			None;(source:Araport11)
AT4G05975.1	long_noncoding_rna			None;(source:Araport11)
AT5G24630.11	protein_coding		This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	double-stranded DNA binding protein;(source:Araport11)
AT3G11520.2	protein_coding		Encodes a B-type mitotic cyclin.	CYCLIN B1;(source:Araport11)
AT5G24630.12	protein_coding		This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	double-stranded DNA binding protein;(source:Araport11)
AT4G17098.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G17100;(source:Araport11)
AT4G17098.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G17100;(source:Araport11)
AT1G50700.3	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 33;(source:Araport11)
AT4G06020.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, flower, pollen;(source:Araport11)
AT3G00500.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G23740.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G74660.2	protein_coding		Encodes MINI ZINC FINGER 1 (MIF1) which has a zinc finger domain but lacks other protein motifs normally present in transcription factors. MIF1 physically interact with a group of zinc finger-homeodomain (ZHD) transcription factors, such as ZHD5 (AT1G75240), that regulate floral architecture and leaf development. Gel mobility shift assays revealed that MIF1 blocks the DNA binding activity of ZHD5 homodimers by competitively forming MIF1-ZHD5 heterodimers.  Constitutive overexpression of MIF1 caused dramatic developmental defects, seedlings were non-responsive to gibberellin (GA) for cell elongation, hypersensitive to the GA synthesis inhibitor paclobutrazol (PAC) and abscisic acid (ABA), and hyposensitive to  auxin, brassinosteroid and cytokinin, but normally responsive to ethylene.	mini zinc finger 1;(source:Araport11)
AT2G09200.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G40815;(source:Araport11)
AT2G02370.3	protein_coding			SNARE associated Golgi protein family;(source:Araport11)
AT1G16060.7	protein_coding		Encodes ADAP, an AP2-domain protein that interacts with ARIA.  ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.	ARIA-interacting double AP2 domain protein;(source:Araport11)
AT5G01565.1	long_noncoding_rna			None;(source:Araport11)
AT2G09360.1	long_noncoding_rna			None;(source:Araport11)
AT4G25440.2	protein_coding			zinc finger WD40 repeat protein 1;(source:Araport11)
AT4G25440.3	protein_coding			zinc finger WD40 repeat protein 1;(source:Araport11)
AT1G56000.2	protein_coding			FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT3G09720.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G08200.1	long_noncoding_rna			None;(source:Araport11)
AT5G47100.2	protein_coding		member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins. CBL9 interacts with and targets CIPK23 to the plasma membrane in vivo.	calcineurin B-like protein 9;(source:Araport11)
AT2G25905.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G03776.3	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G03776.2	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G73950.2	protein_coding			Transmembrane Fragile-X-F-associated protein;(source:Araport11)
AT1G55325.4	protein_coding		Encodes the Arabidopsis homolog of the transcriptional regulator MED13, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation.	RNA polymerase II transcription mediator;(source:Araport11)
AT1G05087.2	protein_coding			dentin sialophosphoprotein;(source:Araport11)
AT1G07013.1	long_noncoding_rna			None;(source:Araport11)
AT1G55325.3	protein_coding		Encodes the Arabidopsis homolog of the transcriptional regulator MED13, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation.	RNA polymerase II transcription mediator;(source:Araport11)
AT5G08120.2	protein_coding		Microtubule-associated and viral movement protein binding protein. Negatively regulates KN1 association to plasmodesmata and, consequently, cell-to-cell  transport. Involved in the alignment of cortical microtubules, the patterning of stomata and in restricting tobamoviral infections.	movement protein binding protein 2C;(source:Araport11)
AT3G51470.2	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT5G01065.1	long_noncoding_rna			None;(source:Araport11)
AT1G73410.2	protein_coding		Encodes a putative transcription factor that is a member of the  R2R3-MYB  family.	myb domain protein 54;(source:Araport11)
AT5G05385.1	small_nucleolar_rna			None;(source:Araport11)
AT3G53075.2	protein_coding			D-galactoside/L-rhamnose binding SUEL lectin protein;(source:Araport11)
AT4G12840.3	protein_coding			GTPase Der (DUF707);(source:Araport11)
AT1G46480.2	protein_coding		Encodes WOX4, a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. This protein also contains an acidic domain approximately 10 residues upstream of the WUS box. Part of the TDIF-TDR-WOX4 signaling pathway that plays a crucial role in the maintenance of the vascular meristem organization during secondary growth. WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation.	WUSCHEL related homeobox 4;(source:Araport11)
AT2G05075.1	long_noncoding_rna			None;(source:Araport11)
AT1G07873.1	long_noncoding_rna			None;(source:Araport11)
AT2G07585.1	long_noncoding_rna			None;(source:Araport11)
AT2G26190.3	protein_coding		IQM4 is a plastid localized, Ca2+ independent calmodulin binding protein that is involved in promoting seed dormancy.	calmodulin-binding family protein;(source:Araport11)
AT2G26190.2	protein_coding		IQM4 is a plastid localized, Ca2+ independent calmodulin binding protein that is involved in promoting seed dormancy.	calmodulin-binding family protein;(source:Araport11)
AT1G04713.1	long_noncoding_rna			None;(source:Araport11)
AT5G03690.3	protein_coding			Aldolase superfamily protein;(source:Araport11)
AT3G26115.3	protein_coding			Pyridoxal-5-phosphate-dependent enzyme family protein;(source:Araport11)
AT4G32070.2	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G26115.5	protein_coding			Pyridoxal-5-phosphate-dependent enzyme family protein;(source:Araport11)
AT3G26115.4	protein_coding			Pyridoxal-5-phosphate-dependent enzyme family protein;(source:Araport11)
AT5G04455.1	small_nuclear_rna			U1;(source:Araport11)
AT2G09155.1	other_rna			None;(source:Araport11)
AT4G22940.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G08875.1	long_noncoding_rna			None;(source:Araport11)
AT4G12560.3	protein_coding		Encodes CPR1 (Constitutive Expresser of PR Genes 1, also known as CPR30), a F-Box protein that functions as a negative regulator of defense response and targets resistance proteins.	F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G06557.1	long_noncoding_rna			None;(source:Araport11)
AT4G36740.2	protein_coding		Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	homeobox protein 40;(source:Araport11)
AT5G08235.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G54680;(source:Araport11)
AT3G57470.6	protein_coding			Insulinase (Peptidase family M16) family protein;(source:Araport11)
AT1G09745.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G49940.5	protein_coding			hypothetical protein;(source:Araport11)
AT3G22150.2	protein_coding		Involved in RNA editing of plastid atpF and mitochondrial nad5.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G43064.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G06657.1	long_noncoding_rna			None;(source:Araport11)
AT5G05855.1	long_noncoding_rna			None;(source:Araport11)
AT3G57470.4	protein_coding			Insulinase (Peptidase family M16) family protein;(source:Araport11)
AT2G34200.2	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G71000.2	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G48120.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT5G48120.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT2G23348.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G05115.1	long_noncoding_rna			None;(source:Araport11)
AT1G54210.3	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT2G41600.7	protein_coding			Mitochondrial glycoprotein family protein;(source:Araport11)
AT1G05257.1	antisense_rna			Natural antisense transcript overlaps with AT1G16730;(source:Araport11)
AT3G08415.1	long_noncoding_rna			None;(source:Araport11)
AT3G08947.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT3G10500.2	protein_coding		Encodes a transcriptional activator that is associated with the plasma membrane in a dormant form and is proteolytically cleaved to create a form that can enter the nucleus.  It is thought to promote ROS production by binding directly to the promoters of genes encoding ROS biosynthetic enzymes during drought-induced leaf senescence.The mRNA is cell-to-cell mobile.	NAC domain containing protein 53;(source:Araport11)
AT3G07365.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G46230;(source:Araport11)
AT1G09800.2	protein_coding			Pseudouridine synthase family protein;(source:Araport11)
AT3G01905.1	antisense_rna			Natural antisense transcript overlaps with AT3G06950;(source:Araport11)
AT5G58510.2	protein_coding			Rab3 GTPase-activating protein catalytic protein;(source:Araport11)
AT5G42450.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G06845.1	long_noncoding_rna			None;(source:Araport11)
AT3G53270.7	protein_coding			Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein;(source:Araport11)
AT3G55660.2	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	ROP (rho of plants) guanine nucleotide exchange factor 6;(source:Araport11)
AT4G27370.4	protein_coding		member of Myosin-like proteins	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G21895.2	protein_coding			DNA binding protein;(source:Araport11)
AT4G27370.2	protein_coding		member of Myosin-like proteins	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G27370.3	protein_coding		member of Myosin-like proteins	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G07345.1	long_noncoding_rna			None;(source:Araport11)
AT4G30260.3	protein_coding		Encodes one of the two YPT/RAB GTPase Interacting Protein 4a (YIP4a) and YIP4b (formerly YIP2), which form a TGN-localized complex with ECHIDNA (ECH). This complex is required for the secretion of cell wall polysaccharides.	Integral membrane Yip1 family protein;(source:Araport11)
AT2G35840.4	protein_coding			Sucrose-6F-phosphate phosphohydrolase family protein;(source:Araport11)
AT5G20730.uORF1	uORF			Derives_from AT5G20730;(source:Araport11)
AT5G20730.uORF2	uORF			Derives_from AT5G20730;(source:Araport11)
AT3G25170.3	protein_coding		Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 26;(source:Araport11)
AT3G25170.2	protein_coding		Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	ralf-like 26;(source:Araport11)
AT5G65940.4	protein_coding		hydrolyzes beta-hydroxyisobutyryl-CoA	beta-hydroxyisobutyryl-CoA hydrolase 1;(source:Araport11)
AT1G47695.1	protein_coding			F-box/RNI/FBD-like domain protein;(source:Araport11)
AT3G10110.4	protein_coding			Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT5G18245.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G18240;(source:Araport11)
AT3G08400.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G54490;(source:Araport11)
AT3G10110.3	protein_coding			Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT3G10110.2	protein_coding			Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT3G02980.2	protein_coding		Encodes MEIOTIC CONTROL OF CROSSOVERS1 (MCC1), a GCN5-related histone N-acetyltransferase. MCC1 appeared to be required in meiosis for normal chiasma number and distribution and for chromosome segregation.  Activation tagging line has increased level of histone H3 acetylation.	MEIOTIC CONTROL OF CROSSOVERS1;(source:Araport11)
AT2G09075.1	long_noncoding_rna			None;(source:Araport11)
AT5G20180.4	protein_coding			Ribosomal protein L36;(source:Araport11)
AT5G20180.3	protein_coding			Ribosomal protein L36;(source:Araport11)
AT4G04795.1	long_noncoding_rna			None;(source:Araport11)
AT5G04440.2	protein_coding			RAP release 2, galactose-binding-like domain protein, putative (DUF1997);(source:Araport11)
AT3G55160.3	protein_coding		THADA is an orphan gene in Arabidopsis thaliana. It is the only DUF2428 domain containing protein in the genome.	thyroid adenoma-associated-like protein;(source:Araport11)
AT5G28462.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G21473.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G17540.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G08013.1	long_noncoding_rna			None;(source:Araport11)
AT5G18245.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G18240;(source:Araport11)
AT4G05605.1	long_noncoding_rna			None;(source:Araport11)
AT4G11402.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G01050.2	protein_coding		Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate.	pyrophosphorylase 1;(source:Araport11)
AT1G23880.2	protein_coding			NHL domain-containing protein;(source:Araport11)
AT5G10150.2	protein_coding		SOK2 is a DUF966 domain containing protein of unknown function. Expressed in discrete domains of the PM. In root endodermis and embryo, expression is in inner basal edges  and in basal	UPSTREAM OF FLC protein (DUF966);(source:Araport11)
AT3G46000.2	protein_coding		Encodes depolymerizing factor 2.	actin depolymerizing factor 2;(source:Araport11)
AT3G46000.3	protein_coding		Encodes depolymerizing factor 2.	actin depolymerizing factor 2;(source:Araport11)
AT2G05255.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G07785;(source:Araport11)
AT4G05315.1	long_noncoding_rna			None;(source:Araport11)
AT5G51960.2	protein_coding			complex 1 protein, LYR family protein;(source:Araport11)
AT4G13030.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G28770.4	protein_coding		BASIC LEUCINE ZIPPER protein which regulates the circadian oscillator gene PSEUDO RESPONSE REGULATOR7 (PRR7) to change the circadian phase in response to sugars. It upregulates PRR7 in response to low energy. bZIP63 and PRR7 are required for correct oscillator phase under light/dark cycles. bZIP protein BZO2H3 mRNA, partial cds	bZIP transcription factor family protein;(source:Araport11)
AT4G37160.2	protein_coding			SKU5 similar 15;(source:Araport11)
AT3G48205.2	protein_coding		Encodes a Plant thionin family protein	plant thionin family protein;(source:Araport11)
AT1G68030.3	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G68030.2	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G17120.3	protein_coding			transmembrane protein;(source:Araport11)
AT3G08655.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G56450;(source:Araport11)
AT5G35913.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G17120.4	protein_coding			transmembrane protein;(source:Araport11)
AT1G09153.1	long_noncoding_rna			None;(source:Araport11)
AT3G02445.1	small_nucleolar_rna			None;(source:Araport11)
AT2G08955.1	long_noncoding_rna			None;(source:Araport11)
AT1G04657.1	long_noncoding_rna			None;(source:Araport11)
AT1G59840.3	protein_coding			cofactor assembly of complex C;(source:Araport11)
AT4G04470.2	protein_coding		22-kD peroxisomal membrane protein, an integral membrane protein embedded in the lipid bilayer.	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT2G14680.8	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT1G04867.1	other_rna			None;(source:Araport11)
AT5G08755.1	long_noncoding_rna			None;(source:Araport11)
AT3G01055.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G01830;(source:Araport11)
AT5G07385.1	long_noncoding_rna			None;(source:Araport11)
AT3G09225.1	small_nucleolar_rna			None;(source:Araport11)
AT3G18960.2	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G18960.3	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G28980.5	protein_coding			mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216);(source:Araport11)
AT3G28980.4	protein_coding			mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216);(source:Araport11)
AT1G31150.2	protein_coding			K-box region protein (DUF1985);(source:Araport11)
AT4G12030.5	protein_coding		Required for the biosynthesis of methionine-derived glucosinolates. Involved in the  transport of 2-keto acids between chloroplasts and the cytosol.	bile acid transporter 5;(source:Araport11)
AT3G28980.3	protein_coding			mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216);(source:Araport11)
AT3G28980.2	protein_coding			mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216);(source:Araport11)
AT2G42190.3	protein_coding			rho GTPase-activating gacO-like protein;(source:Araport11)
AT3G09440.4	protein_coding			Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT2G06215.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G14680;(source:Araport11)
AT3G09440.3	protein_coding			Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT3G18900.5	protein_coding			ternary complex factor MIP1 leucine-zipper protein;(source:Araport11)
AT2G34300.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G01915.1	miRNA_primary_transcript			microRNA ath-MIR5629 precursor;(source:Araport11)
AT5G16680.2	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G44766.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G25493.1	protein_coding			formin-like protein;(source:Araport11)
AT5G03295.1	long_noncoding_rna			None;(source:Araport11)
AT3G09345.1	long_noncoding_rna			None;(source:Araport11)
AT4G08170.5	protein_coding			Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11)
AT4G08170.4	protein_coding			Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11)
AT4G08170.7	protein_coding			Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11)
AT4G08170.6	protein_coding			Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11)
AT4G00163.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G06278.4	pseudogene		pseudogene of abscisic acid-responsive HVA22 family protein	pseudogene of HVA22-like protein J;(source:Araport11)
AT2G09300.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G41705;(source:Araport11)
AT5G36710.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G07980.2	protein_coding			dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G06278.3	pseudogene		pseudogene of abscisic acid-responsive HVA22 family protein	pseudogene of HVA22-like protein J;(source:Araport11)
AT5G06278.2	pseudogene		pseudogene of abscisic acid-responsive HVA22 family protein	pseudogene of HVA22-like protein J;(source:Araport11)
AT1G48670.2	protein_coding			auxin-responsive GH3 family protein;(source:Araport11)
AT2G40095.3	protein_coding			Alpha/beta hydrolase related protein;(source:Araport11)
AT2G40095.2	protein_coding			Alpha/beta hydrolase related protein;(source:Araport11)
AT1G67635.2	protein_coding			phosphatidylinositol 4-kinase gamma-like protein;(source:Araport11)
AT5G15600.2	protein_coding		SPIRAL1-LIKE4 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.	SPIRAL1-like4;(source:Araport11)
AT2G18960.3	protein_coding		Encodes a plasma membrane proton ATPase.  Mutants have a reduced ability to close their stomata in response to drought and blue light, and are affected in stomatal but not seed responsiveness to ABA.It is the major isoform involved in the blue light mediated stomatal respsonse.The mRNA is cell-to-cell mobile.	H[+]-ATPase 1;(source:Araport11)
AT2G18960.2	protein_coding		Encodes a plasma membrane proton ATPase.  Mutants have a reduced ability to close their stomata in response to drought and blue light, and are affected in stomatal but not seed responsiveness to ABA.It is the major isoform involved in the blue light mediated stomatal respsonse.The mRNA is cell-to-cell mobile.	H[+]-ATPase 1;(source:Araport11)
AT4G37553.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G37550 and AT4G37560;(source:Araport11)
AT4G37553.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G37550 and AT4G37560;(source:Araport11)
AT2G09965.1	long_noncoding_rna			None;(source:Araport11)
AT1G21580.6	protein_coding		Encodes a zinc-finger protein that co-localizes with the exosome-associated RNA helicase HEN2 and functions as a co-factor of nuclear RNA quality control by the nucleoplasmic exosome.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT4G37553.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G37550 and AT4G37560;(source:Araport11)
AT5G09135.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G63050;(source:Araport11)
AT3G13690.3	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT3G13690.2	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT3G19360.2	protein_coding			Zinc finger (CCCH-type) family protein;(source:Araport11)
AT3G05685.2	protein_coding			Cystatin/monellin superfamily protein;(source:Araport11)
AT3G04125.1	long_noncoding_rna			None;(source:Araport11)
AT3G54940.3	protein_coding			Papain family cysteine protease;(source:Araport11)
AT1G26255.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G26255.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G26255.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G26255.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G26255.5	protein_coding			hypothetical protein;(source:Araport11)
AT3G00900.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G24530.2	protein_coding			AAA-type ATPase family protein / ankyrin repeat family protein;(source:Araport11)
AT3G24530.3	protein_coding			AAA-type ATPase family protein / ankyrin repeat family protein;(source:Araport11)
AT1G06863.1	long_noncoding_rna			None;(source:Araport11)
AT1G53180.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G44895.1	protein_coding			minichromosone maintenance protein;(source:Araport11)
AT2G05015.1	long_noncoding_rna			None;(source:Araport11)
AT3G62620.6	protein_coding		Encodes a protein of unknown function. Previously this protein has been annotated computationally as a sucrose-phosphatase-related protein. However, the source of this annotation can not be verified. This annotation (sucrose-phosphatase-related) has been removed.	sucrose-phosphatase-like protein;(source:Araport11)
AT3G62620.7	protein_coding		Encodes a protein of unknown function. Previously this protein has been annotated computationally as a sucrose-phosphatase-related protein. However, the source of this annotation can not be verified. This annotation (sucrose-phosphatase-related) has been removed.	sucrose-phosphatase-like protein;(source:Araport11)
AT3G62620.4	protein_coding		Encodes a protein of unknown function. Previously this protein has been annotated computationally as a sucrose-phosphatase-related protein. However, the source of this annotation can not be verified. This annotation (sucrose-phosphatase-related) has been removed.	sucrose-phosphatase-like protein;(source:Araport11)
AT3G62620.5	protein_coding		Encodes a protein of unknown function. Previously this protein has been annotated computationally as a sucrose-phosphatase-related protein. However, the source of this annotation can not be verified. This annotation (sucrose-phosphatase-related) has been removed.	sucrose-phosphatase-like protein;(source:Araport11)
AT3G51370.3	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT3G62620.8	protein_coding		Encodes a protein of unknown function. Previously this protein has been annotated computationally as a sucrose-phosphatase-related protein. However, the source of this annotation can not be verified. This annotation (sucrose-phosphatase-related) has been removed.	sucrose-phosphatase-like protein;(source:Araport11)
AT3G62620.9	protein_coding		Encodes a protein of unknown function. Previously this protein has been annotated computationally as a sucrose-phosphatase-related protein. However, the source of this annotation can not be verified. This annotation (sucrose-phosphatase-related) has been removed.	sucrose-phosphatase-like protein;(source:Araport11)
AT3G08795.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G56940;(source:Araport11)
AT5G06270.2	protein_coding		One of two plant specific paralogs of unknown function. Interacts with GL2. GIR1/GIR2 loss of function resembles gl2 lof mutations	hypothetical protein;(source:Araport11)
AT2G47245.1	protein_coding			long chain acyl-CoA synthetase;(source:Araport11)
AT4G32010.2	protein_coding			HSI2-like 1;(source:Araport11)
AT1G21630.4	protein_coding		TPLATE Adaptor complex subunit.	Calcium-binding EF hand family protein;(source:Araport11)
AT1G21630.3	protein_coding		TPLATE Adaptor complex subunit.	Calcium-binding EF hand family protein;(source:Araport11)
AT2G20950.9	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT3G09955.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G63400;(source:Araport11)
AT5G06250.3	protein_coding		Transcription repressor involved in regulation of inflorescence architecture.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT2G09295.1	long_noncoding_rna			None;(source:Araport11)
AT2G20950.5	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G07475.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G21950;(source:Araport11)
AT1G60460.4	protein_coding		Encodes a structural homolog of the archaeal topo VIB subunit that forms a complex with the two Arabidopsis thaliana SPO11 orthologs required for meiotic DSB formation (SPO11-1 and SPO11-2) and is essential for meiotic DSB formation.	hypothetical protein;(source:Araport11)
AT3G42075.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G23400.2	protein_coding			Undecaprenyl pyrophosphate synthetase family protein;(source:Araport11)
AT5G06250.4	protein_coding		Transcription repressor involved in regulation of inflorescence architecture.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G61220.3	protein_coding		CytADR/SDR1 is an aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on alpha,beta-unsaturated aldehydes with more than 5 carbons in vitro. It can also act on menthone and neomenthol in vitro, but these do not represent likely endogenous activities of this enzyme in planta. GFP-tagged CytADR appears to localize to the cytosol where it likely plays a role in detoxifying reactive carbonyls. sdr1 mutants have altered responses to pathogens.The mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G00490.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G07025.1	long_noncoding_rna			None;(source:Araport11)
AT5G08440.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G13700.3	protein_coding		Encodes a cytosolic 6-phosphogluconolactonase (PGL) thought to be involved in the oxidative pentose-phosphate pathway (OPPP).	6-phosphogluconolactonase 1;(source:Araport11)
AT1G13700.2	protein_coding		Encodes a cytosolic 6-phosphogluconolactonase (PGL) thought to be involved in the oxidative pentose-phosphate pathway (OPPP).	6-phosphogluconolactonase 1;(source:Araport11)
AT5G38690.2	protein_coding			Zinc-finger domain of monoamine-oxidase A repressor R1 protein;(source:Araport11)
AT5G08015.1	long_noncoding_rna			None;(source:Araport11)
AT2G48060.3	protein_coding			piezo-type mechanosensitive ion channel component;(source:Araport11)
AT2G48060.2	protein_coding			piezo-type mechanosensitive ion channel component;(source:Araport11)
AT4G04750.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G26420.3	protein_coding		Encodes a phosphatidylinositol-4-phosphate 5-kinase. Exclusively expressed in roots. Essential for root hair growth.	1-phosphatidylinositol-4-phosphate 5-kinase 3;(source:Araport11)
AT2G26420.2	protein_coding		Encodes a phosphatidylinositol-4-phosphate 5-kinase. Exclusively expressed in roots. Essential for root hair growth.	1-phosphatidylinositol-4-phosphate 5-kinase 3;(source:Araport11)
AT1G09137.1	long_noncoding_rna			None;(source:Araport11)
AT3G50280.2	protein_coding			HXXXD-type acyl-transferase family protein;(source:Araport11)
AT2G02820.3	protein_coding		Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells.  This phenotype is enhanced in double mutants over the single mutant flp phenotype. Also regulates female reproductive development.	myb domain protein 88;(source:Araport11)
AT3G09105.1	long_noncoding_rna			None;(source:Araport11)
AT4G24740.10	protein_coding		a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.	LAMMER-type protein kinase AFC2;(source:Araport11)
AT3G08050.1	long_noncoding_rna			None;(source:Araport11)
AT2G04620.2	protein_coding		Encodes a Zn transporter that localizes to the Golgi apparatus and forms a functional complex with AtMTP5t1 to transport Zn into the Golgi.	zinc transporter-like protein;(source:Araport11)
AT1G33700.3	protein_coding			Beta-glucosidase, GBA2 type family protein;(source:Araport11)
AT3G07730.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G33700.4	protein_coding			Beta-glucosidase, GBA2 type family protein;(source:Araport11)
AT1G09703.1	long_noncoding_rna			None;(source:Araport11)
AT4G19520.3	protein_coding			disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G19520.4	protein_coding			disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G19520.5	protein_coding			disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G61500.2	protein_coding		autophagy-related (ATG) gene	autophagy 3 (APG3);(source:Araport11)
AT1G07453.1	long_noncoding_rna			None;(source:Araport11)
AT3G03685.1	long_noncoding_rna			None;(source:Araport11)
AT2G30840.2	protein_coding		encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G30840.3	protein_coding		encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G33720.5	protein_coding			cytochrome P450, family 76, subfamily C, polypeptide 6;(source:Araport11)
AT1G33720.4	protein_coding			cytochrome P450, family 76, subfamily C, polypeptide 6;(source:Araport11)
AT1G33720.3	protein_coding			cytochrome P450, family 76, subfamily C, polypeptide 6;(source:Araport11)
AT1G33720.2	protein_coding			cytochrome P450, family 76, subfamily C, polypeptide 6;(source:Araport11)
AT2G08145.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT4G19990.6	protein_coding			FAR1-related sequence 1;(source:Araport11)
AT1G07477.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G48100;(source:Araport11)
AT5G04690.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT3G09725.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G62080;(source:Araport11)
AT4G06115.1	long_noncoding_rna			None;(source:Araport11)
AT5G50130.3	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G60270.2	protein_coding			beta glucosidase 6;(source:Araport11)
AT5G50130.5	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G08273.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G59850;(source:Araport11)
AT5G50130.7	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G50130.6	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G50130.9	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G50130.8	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G17270.2	protein_coding			O-fucosyltransferase family protein;(source:Araport11)
AT1G34460.7	protein_coding		B1 type cyclin	CYCLIN B1;(source:Araport11)
AT5G03905.2	protein_coding			Iron-sulfur cluster biosynthesis family protein;(source:Araport11)
AT4G30820.12	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT1G07373.1	long_noncoding_rna		Member of conserved family of peptides involved in Fe uptake and homeostasis.	None;(source:Araport11)
AT5G10440.2	protein_coding		Encodes a cyclin involved in cell proliferation during stomatal cell lineage development.	cyclin d4;(source:Araport11)
AT5G50110.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G05345.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, flower, pollen, aerial;(source:Araport11)
AT3G30525.1	protein_coding			nuclease;(source:Araport11)
AT5G09460.uORF2	uORF			Derives_from AT5G09460;(source:Araport11)
AT3G04045.1	long_noncoding_rna			None;(source:Araport11)
AT3G04615.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G24020;(source:Araport11)
AT3G47000.3	protein_coding			Glycosyl hydrolase family protein;(source:Araport11)
AT3G47000.2	protein_coding			Glycosyl hydrolase family protein;(source:Araport11)
AT3G22020.2	protein_coding			Receptor-like protein kinase-related family protein;(source:Araport11)
AT5G04035.1	long_noncoding_rna			None;(source:Araport11)
AT4G10843.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G10843.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G10843.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G09055.1	long_noncoding_rna			None;(source:Araport11)
AT5G55990.2	protein_coding		Encodes a member of the Arabidopsis CBL (Calcineurin B-like Calcium Sensor) protein family.	calcineurin B-like protein 2;(source:Araport11)
AT4G10843.4	protein_coding			hypothetical protein;(source:Araport11)
AT2G01180.3	protein_coding		Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.	phosphatidic acid phosphatase 1;(source:Araport11)
AT2G01180.5	protein_coding		Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.	phosphatidic acid phosphatase 1;(source:Araport11)
AT2G01180.4	protein_coding		Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.	phosphatidic acid phosphatase 1;(source:Araport11)
AT2G01180.7	protein_coding		Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.	phosphatidic acid phosphatase 1;(source:Araport11)
AT2G01180.6	protein_coding		Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.	phosphatidic acid phosphatase 1;(source:Araport11)
AT5G50365.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G01180.8	protein_coding		Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.	phosphatidic acid phosphatase 1;(source:Araport11)
AT1G06360.2	protein_coding			Fatty acid desaturase family protein;(source:Araport11)
AT3G48150.2	protein_coding		anaphase-promoting complex or cyclosome subunit	anaphase-promoting complex subunit 8;(source:Araport11)
AT4G38960.5	protein_coding		BBX19 is a B-box containing transcriptional regulator involved in photomporphogenesis and flowering.	B-box type zinc finger family protein;(source:Araport11)
AT4G38960.4	protein_coding		BBX19 is a B-box containing transcriptional regulator involved in photomporphogenesis and flowering.	B-box type zinc finger family protein;(source:Araport11)
AT3G53560.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G66930.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G66930.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G43600.2	protein_coding			Chitinase family protein;(source:Araport11)
AT2G06595.1	long_noncoding_rna			None;(source:Araport11)
AT1G24030.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G65130.3	protein_coding			Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT1G10095.4	protein_coding			Protein prenylyltransferase superfamily protein;(source:Araport11)
AT1G10095.3	protein_coding			Protein prenylyltransferase superfamily protein;(source:Araport11)
AT1G10095.2	protein_coding			Protein prenylyltransferase superfamily protein;(source:Araport11)
AT1G24030.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G24030.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G08065.1	long_noncoding_rna			None;(source:Araport11)
AT5G60450.uORF1	uORF			Derives_from AT5G60450;(source:Araport11)
AT1G76780.2	protein_coding			HSP20-like chaperones superfamily protein;(source:Araport11)
AT1G76780.3	protein_coding			HSP20-like chaperones superfamily protein;(source:Araport11)
AT4G05920.1	long_noncoding_rna			None;(source:Araport11)
AT5G00445.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G05195.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT5G00445.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G13800.3	protein_coding			Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT5G05790.2	protein_coding			Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT2G08530.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G32650;(source:Araport11)
AT1G71240.3	protein_coding			chromosome-partitioning protein, putative (DUF639);(source:Araport11)
AT4G24413.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G22330.2	protein_coding		Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.The mRNA is cell-to-cell mobile.	cytochrome P450, family 79, subfamily B, polypeptide 3;(source:Araport11)
AT4G02050.2	protein_coding		STP7 is a monosaccharide/H+ symporter that transports arabinose and xylose.	sugar transporter protein 7;(source:Araport11)
AT5G09555.1	long_noncoding_rna			None;(source:Araport11)
AT1G78590.2	protein_coding		Encodes a NADH kinase which can synthesize NADPH from NADH; also utilizes NAD+ as substrate although NADH is the preferred substrate.	NAD(H) kinase 3;(source:Araport11)
AT1G09015.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G07537.1	small_nuclear_rna			U4;(source:Araport11)
AT1G52500.4	protein_coding		Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Encodes a formamidopyrimidine-DNA glycosylase that has abasic lyase activity and is able to nick double- stranded oligonucleotides containing 8-oxo-7,8-dihydroguanine (8-oxoG) in vitro.	MUTM homolog-1;(source:Araport11)
AT1G52500.5	protein_coding		Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Encodes a formamidopyrimidine-DNA glycosylase that has abasic lyase activity and is able to nick double- stranded oligonucleotides containing 8-oxo-7,8-dihydroguanine (8-oxoG) in vitro.	MUTM homolog-1;(source:Araport11)
AT2G46030.4	protein_coding		Ubiquitin conjugating enzyme E2	ubiquitin-conjugating enzyme 6;(source:Araport11)
AT2G46030.5	protein_coding		Ubiquitin conjugating enzyme E2	ubiquitin-conjugating enzyme 6;(source:Araport11)
AT4G07270.1	long_noncoding_rna			None;(source:Araport11)
AT5G14490.4	protein_coding			NAC domain containing protein 85;(source:Araport11)
AT2G46030.2	protein_coding		Ubiquitin conjugating enzyme E2	ubiquitin-conjugating enzyme 6;(source:Araport11)
AT3G01595.1	long_noncoding_rna			None;(source:Araport11)
AT2G07315.1	miRNA_primary_transcript			microRNA ath-MIR8167a precursor;(source:Araport11)
AT1G03720.2	protein_coding			Cysteine proteinases superfamily protein;(source:Araport11)
AT1G01790.2	protein_coding		Encodes a member of the cation/proton antiporters-2 antiporter superfamily, the K efflux antiporter KEA1 that is localized to the chloroplast envelope.	K+ efflux antiporter 1;(source:Araport11)
AT4G14640.3	protein_coding		encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1). Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms.	calmodulin 8;(source:Araport11)
AT5G17860.2	protein_coding			calcium exchanger 7;(source:Araport11)
AT3G62100.2	protein_coding		Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA30 lacks the conserved degron (domain II) found in many family members.  IAA30 transcripts are induced by auxin treatment and accumulate preferentially in the quiescent center cells of the root meristem. Overexpression of IAA30 leads to defects in gravitropism, root development, root meristem maintenance, and cotyledon vascular development.	indole-3-acetic acid inducible 30;(source:Araport11)
AT4G30820.17	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT5G42210.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G09735.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09735.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G52990.2	protein_coding			thioredoxin family protein;(source:Araport11)
AT1G69085.1	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT3G52120.3	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein;(source:Araport11)
AT2G46420.3	protein_coding			helicase with zinc finger protein;(source:Araport11)
AT5G63370.5	protein_coding		CDKG1 interacts with the splicing factor RSZ33 to regulate proper splicing of Cals5 Pre-mRNA.	Protein kinase superfamily protein;(source:Araport11)
AT4G30020.2	protein_coding			PA-domain containing subtilase family protein;(source:Araport11)
AT4G30020.3	protein_coding			PA-domain containing subtilase family protein;(source:Araport11)
AT4G30020.4	protein_coding			PA-domain containing subtilase family protein;(source:Araport11)
AT1G05003.1	long_noncoding_rna			None;(source:Araport11)
AT4G06035.1	novel_transcribed_region			novel transcribed region; detected in flower, pollen;(source:Araport11)
AT5G00570.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G44560.2	protein_coding			fatty acid reductase 8;(source:Araport11)
AT4G09895.1	long_noncoding_rna			None;(source:Araport11)
AT1G06370.5	pseudogene			pseudogene of Alg9-like mannosyltransferase family;(source:Araport11)
AT3G18550.4	protein_coding		Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth.	TCP family transcription factor;(source:Araport11)
AT3G18550.3	protein_coding		Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth.	TCP family transcription factor;(source:Araport11)
AT1G80555.2	protein_coding			Isocitrate/isopropylmalate dehydrogenase family protein;(source:Araport11)
AT3G06480.2	protein_coding			DEAD box RNA helicase family protein;(source:Araport11)
AT5G07805.1	long_noncoding_rna			None;(source:Araport11)
AT1G07707.1	long_noncoding_rna			None;(source:Araport11)
AT2G40740.3	protein_coding		member of WRKY Transcription Factor; Group III	WRKY DNA-binding protein 55;(source:Araport11)
AT2G16930.4	protein_coding			Ribosomal protein L27 family protein;(source:Araport11)
AT4G09025.1	long_noncoding_rna			None;(source:Araport11)
AT4G39830.2	protein_coding		role in the degradation of ascorbate to (mono)dehydroascorbate	Cupredoxin superfamily protein;(source:Araport11)
AT4G39830.3	protein_coding		role in the degradation of ascorbate to (mono)dehydroascorbate	Cupredoxin superfamily protein;(source:Araport11)
AT3G02485.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G12250;(source:Araport11)
AT1G12350.2	protein_coding		At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4?-phospho-N-pantothenoylcysteine (PPC)	4-phospho-panto-thenoylcysteine synthetase;(source:Araport11)
AT1G60680.2	protein_coding			NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT3G02485.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G12250;(source:Araport11)
AT2G05885.1	long_noncoding_rna			None;(source:Araport11)
AT1G09083.1	small_nucleolar_rna			None;(source:Araport11)
AT1G04417.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G05730;(source:Araport11)
AT5G06570.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G42770.3	protein_coding			Maf-like protein;(source:Araport11)
AT1G04833.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G11050;(source:Araport11)
AT1G22970.3	protein_coding			cyclin-D1-binding protein;(source:Araport11)
AT1G06343.1	long_noncoding_rna			None;(source:Araport11)
AT5G06265.7	protein_coding			hyaluronan mediated motility receptor-like protein;(source:Araport11)
AT3G09575.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G61230;(source:Araport11)
AT2G09670.1	miRNA_primary_transcript			microRNA ath-MIR5655 precursor;(source:Araport11)
AT1G76620.2	protein_coding			Serine/Threonine-kinase, putative (Protein of unknown function, DUF547);(source:Araport11)
AT3G53570.5	protein_coding		a  member of a CDC2-related kinase subfamily,  the LAMMER kinases. activates STE12-dependent functions in yeast.	serine/threonine-protein kinase AFC1;(source:Araport11)
AT5G06265.5	protein_coding			hyaluronan mediated motility receptor-like protein;(source:Araport11)
AT1G30000.2	protein_coding			alpha-mannosidase 3;(source:Araport11)
AT1G48698.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G48700;(source:Araport11)
AT1G48698.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G48700;(source:Araport11)
AT2G09515.1	long_noncoding_rna			None;(source:Araport11)
AT1G33615.6	other_rna			None;(source:Araport11)
AT1G33615.4	other_rna			None;(source:Araport11)
AT1G33615.5	other_rna			None;(source:Araport11)
AT1G33615.2	other_rna			None;(source:Araport11)
AT1G33615.3	other_rna			None;(source:Araport11)
AT3G07445.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT2G08590.1	long_noncoding_rna			None;(source:Araport11)
AT5G02235.1	novel_transcribed_region			novel transcribed region; detected in carpel, dark-grown seedling, light-grown seedling;(source:Araport11)
AT1G51270.6	protein_coding			vesicle-associated protein 1-4;(source:Araport11)
AT2G26695.2	protein_coding			Ran BP2/NZF zinc finger-like superfamily protein;(source:Araport11)
AT5G61760.2	protein_coding		Encodes an inositol polyphosphate 3-/6-/5-kinase that is localized to the nucleus. Able to complement a mutation in a yeast transcriptional regulator gene (ARG82/IPK2).  Acts redundantly with ATIPK2alpha during pollen   development, pollen tube guidance and embryogenesis.	inositol polyphosphate kinase 2 beta;(source:Araport11)
AT3G05335.1	small_nucleolar_rna			None;(source:Araport11)
AT4G23660.5	protein_coding		Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50).	polyprenyltransferase 1;(source:Araport11)
AT4G05755.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G10020;(source:Araport11)
AT4G05755.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G10020;(source:Araport11)
AT4G19810.2	protein_coding		ChiC encodes a Class V chitinase that is a part of glycoside hydrolase family 18 based on CAZy groupings. It appears to primarily act as an exochitinase in vitro where it predominantly cleaves a chitobiose (GlcNAc)2 residue from the non-reducing end of a chitin oligosaccharide. However, it shows some minor endochitinase activity in vitro, as well. A putative 24 amino-acid signal peptide may direct this protein to the secretory system and it has been detected in cell wall apoplastic fluid. RT-PCR experiments demonstrate that ChiC transcript levels are increased in response to abscisisc acid, jasmonic acid, and NaCl stress. Microarray results also suggest that transcript levels rise in response to osmotic stress, two fungal pathogens, a bacterial pathogen, and the elicitor flagellin.The mRNA is cell-to-cell mobile.	Glycosyl hydrolase family protein with chitinase insertion domain-containing protein;(source:Araport11)
AT5G01685.1	long_noncoding_rna			None;(source:Araport11)
AT5G55580.3	protein_coding		Encodes a mitochondrial transcription termination factor (mTERF) family protein. The gene product is targeted to the chloroplast and mutants are affected in chloroplast development. Mutants, named as twirt1 (twr-1), display altered root meristem function resulting in short roots.  Mutation also affects shoot meristem function.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT5G55580.2	protein_coding		Encodes a mitochondrial transcription termination factor (mTERF) family protein. The gene product is targeted to the chloroplast and mutants are affected in chloroplast development. Mutants, named as twirt1 (twr-1), display altered root meristem function resulting in short roots.  Mutation also affects shoot meristem function.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT3G24700.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G13390.2	protein_coding		Required for normal pollen development and lipid accumulation within the tapetum	no exine formation 1;(source:Araport11)
AT5G59710.3	protein_coding		Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator.The mRNA is cell-to-cell mobile.	VIRE2 interacting protein 2;(source:Araport11)
AT2G07095.1	long_noncoding_rna			None;(source:Araport11)
AT2G31440.2	protein_coding		Encodes a gamma-secretase subunit.  Associates with other subunits in intracellular membrane compartments.	gamma-secretase subunit APH1-like protein;(source:Araport11)
AT2G06485.1	long_noncoding_rna			None;(source:Araport11)
AT3G29770.2	protein_coding		Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	methyl esterase 11;(source:Araport11)
AT3G06295.1	long_noncoding_rna			None;(source:Araport11)
AT5G53500.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G28880.4	protein_coding		Member of CKL gene family (CKL-A group)	casein kinase I-like 3;(source:Araport11)
AT2G16790.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G23405.3	protein_coding			HMG-box (high mobility group) DNA-binding family protein;(source:Araport11)
AT1G04170.2	protein_coding		protein synthesis initiation factor eIF2 gammaThe mRNA is cell-to-cell mobile.	eukaryotic translation initiation factor 2 gamma subunit;(source:Araport11)
AT1G73770.3	protein_coding			coiled-coil protein;(source:Araport11)
AT4G38380.4	protein_coding			MATE efflux family protein;(source:Araport11)
AT1G06713.1	long_noncoding_rna			None;(source:Araport11)
AT3G52100.4	protein_coding			RING/FYVE/PHD-type zinc finger family protein;(source:Araport11)
AT2G39435.5	protein_coding			Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT2G39435.4	protein_coding			Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT2G39435.3	protein_coding			Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT3G06370.4	protein_coding		member of Sodium proton exchanger family	sodium hydrogen exchanger 4;(source:Araport11)
AT3G03635.1	long_noncoding_rna			None;(source:Araport11)
AT5G04933.1	protein_coding			Pol-like polyprotein/retrotransposon;(source:Araport11)
AT2G35600.2	protein_coding		Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	BREVIS RADIX-like 1;(source:Araport11)
AT4G31450.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G52825.2	protein_coding			sporulation-specific protein;(source:Araport11)
AT1G51670.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G06370.2	protein_coding		member of Sodium proton exchanger family	sodium hydrogen exchanger 4;(source:Araport11)
AT5G06045.1	long_noncoding_rna			None;(source:Araport11)
AT3G59300.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G59300.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G09115.1	long_noncoding_rna			None;(source:Araport11)
AT1G16040.2	protein_coding			phosphatidylinositol-glycan biosynthesis class F-like protein;(source:Araport11)
AT1G45249.4	protein_coding		Leucine zipper transcription factor that binds to the abscisic acid (ABA)?responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus.  Expressed constitutively in roots,  leaf vascular tissues, and hydathodes or  in all tissues under stress conditions. It Primes phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment.	abscisic acid responsive elements-binding factor 2;(source:Araport11)
AT1G45249.5	protein_coding		Leucine zipper transcription factor that binds to the abscisic acid (ABA)?responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus.  Expressed constitutively in roots,  leaf vascular tissues, and hydathodes or  in all tissues under stress conditions. It Primes phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment.	abscisic acid responsive elements-binding factor 2;(source:Araport11)
AT1G45249.6	protein_coding		Leucine zipper transcription factor that binds to the abscisic acid (ABA)?responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus.  Expressed constitutively in roots,  leaf vascular tissues, and hydathodes or  in all tissues under stress conditions. It Primes phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment.	abscisic acid responsive elements-binding factor 2;(source:Araport11)
AT1G45249.7	protein_coding		Leucine zipper transcription factor that binds to the abscisic acid (ABA)?responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus.  Expressed constitutively in roots,  leaf vascular tissues, and hydathodes or  in all tissues under stress conditions. It Primes phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment.	abscisic acid responsive elements-binding factor 2;(source:Araport11)
AT2G38260.2	pseudogene		Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit;(source:Araport11)
AT1G34750.4	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G43000.2	protein_coding			PLATZ transcription factor family protein;(source:Araport11)
AT1G45249.8	protein_coding		Leucine zipper transcription factor that binds to the abscisic acid (ABA)?responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus.  Expressed constitutively in roots,  leaf vascular tissues, and hydathodes or  in all tissues under stress conditions. It Primes phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment.	abscisic acid responsive elements-binding factor 2;(source:Araport11)
AT1G45249.9	protein_coding		Leucine zipper transcription factor that binds to the abscisic acid (ABA)?responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus.  Expressed constitutively in roots,  leaf vascular tissues, and hydathodes or  in all tissues under stress conditions. It Primes phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment.	abscisic acid responsive elements-binding factor 2;(source:Araport11)
AT1G54770.2	protein_coding			Fcf2 pre-rRNA processing protein;(source:Araport11)
AT1G08923.1	long_noncoding_rna			None;(source:Araport11)
AT3G01130.6	protein_coding			ATP synthase E chain;(source:Araport11)
AT3G27810.2	protein_coding		Encodes a member of the R2R3-MYB transcription factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development. MYB21 interacts with JAZ proteins, and functions redundantly with MYB24 and MYB57 to regulate stamen development.	myb domain protein 21;(source:Araport11)
AT5G08600.3	protein_coding			U3 ribonucleoprotein (Utp) family protein;(source:Araport11)
AT3G26930.2	protein_coding			Protein with RNI-like/FBD-like domain;(source:Araport11)
AT3G05105.1	long_noncoding_rna			None;(source:Araport11)
AT1G09957.1	long_noncoding_rna			None;(source:Araport11)
AT5G16350.3	protein_coding			O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT5G16350.2	protein_coding			O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT1G33600.2	protein_coding			Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT5G03377.2	pseudogene		pseudogene of acylphosphatase family protein	pseudogene of DC1 domain-containing protein;(source:Araport11)
AT4G36160.3	protein_coding		Encodes a NAC-domain transcription factor that is expressed in developing xylem. Over expression of this protein causes ectopic secondary cell wall growth. Complements some of the cell wall defects seen in SND1/NST1 double mutants.	NAC domain containing protein 76;(source:Araport11)
AT4G36160.2	protein_coding		Encodes a NAC-domain transcription factor that is expressed in developing xylem. Over expression of this protein causes ectopic secondary cell wall growth. Complements some of the cell wall defects seen in SND1/NST1 double mutants.	NAC domain containing protein 76;(source:Araport11)
AT3G58060.2	protein_coding		TP8 is a tonoplast localized member of CDF family of cation transporters. It functions in roots as an Mn transporter.MTP8 transports manganese into root vacuoles of iron-deficient plants and thereby prevents inhibition of iron deficiency-induced ferric chelate reductase by manganese. In seed embryos, MTP8 is responsible for manganese and iron enrichment in the subepidermal cell layer (particularly in vit1 mutant background.)	Cation efflux family protein;(source:Araport11)
AT3G03435.1	long_noncoding_rna			None;(source:Araport11)
AT2G14060.2	protein_coding		encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G41315.2	protein_coding		Encodes a basic helix loop helix domain protein that interacts with GL1 in trichome development.GL3 interacts with JAZ and DELLA proteins to regulate trichome initiation.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G41315.3	protein_coding		Encodes a basic helix loop helix domain protein that interacts with GL1 in trichome development.GL3 interacts with JAZ and DELLA proteins to regulate trichome initiation.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G01480.2	protein_coding		ESMD1 is a golgi localized putative O-fucosyltransferase.	O-fucosyltransferase family protein;(source:Araport11)
AT3G26910.3	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G47010.3	protein_coding			Glycosyl hydrolase family protein;(source:Araport11)
AT1G70430.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G09605.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G03030.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT4G26370.3	protein_coding			antitermination NusB domain-containing protein;(source:Araport11)
AT1G08900.4	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G05705.1	long_noncoding_rna			None;(source:Araport11)
AT3G24715.3	protein_coding		HCR1 belongs to the B4 group of Raf-like MAPKKKs. It corresponds to a root hydraulic pressure QTL between Col-0 and Bur-0 accessions and appears to contribute to variation in root pressure in different haplotypes. It is involved in potassium-dependent response to hypoxia.	kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT1G17650.2	protein_coding		Glyoxylate reductase located in chloroplasts.	glyoxylate reductase 2;(source:Araport11)
AT1G01390.2	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G08063.1	long_noncoding_rna			None;(source:Araport11)
AT1G70505.4	protein_coding			transmembrane protein;(source:Araport11)
AT1G70505.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G05487.1	long_noncoding_rna			None;(source:Araport11)
AT3G11890.6	protein_coding			Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT1G09447.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74410;(source:Araport11)
AT3G21430.4	protein_coding			DNA binding protein;(source:Araport11)
AT3G21430.3	protein_coding			DNA binding protein;(source:Araport11)
AT2G07345.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G20890;(source:Araport11)
AT5G08115.1	small_nuclear_rna			U5;(source:Araport11)
AT1G31355.2	pseudogene			pseudogene of Translation protein SH3-like family protein;(source:Araport11)
AT3G13420.3	protein_coding			transmembrane protein;(source:Araport11)
AT3G06055.1	long_noncoding_rna			None;(source:Araport11)
AT5G26160.2	protein_coding			light-independent protochlorophyllide reductase subunit;(source:Araport11)
AT5G15630.4	protein_coding		Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family;(source:Araport11)
AT3G63093.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G55060.3	protein_coding			CAP-gly domain linker;(source:Araport11)
AT5G05280.uORF1	uORF			Derives_from AT5G05280;(source:Araport11)
AT1G45191.5	protein_coding			Glycosyl hydrolase superfamily protein;(source:Araport11)
AT3G07965.1	long_noncoding_rna			None;(source:Araport11)
AT5G03595.1	long_noncoding_rna			None;(source:Araport11)
AT1G79920.3	protein_coding			Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT4G30830.2	protein_coding			myosin-like protein (Protein of unknown function, DUF593);(source:Araport11)
AT3G52075.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G02545.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G12520;(source:Araport11)
AT5G44480.3	protein_coding		mutant has Altered lateral root; UDP Glucose EpimeraseThe mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G05323.1	long_noncoding_rna			None;(source:Araport11)
AT4G06905.1	long_noncoding_rna			None;(source:Araport11)
AT4G06395.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G16400;(source:Araport11)
AT5G08905.1	long_noncoding_rna			None;(source:Araport11)
AT5G09950.3	protein_coding		Encodes a DYW-class PPR protein required   for RNA editing at four sites in mitochondria of A. thaliana.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G07353.1	long_noncoding_rna			None;(source:Araport11)
AT3G52155.3	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT5G24160.3	protein_coding			squalene monooxygenase 6;(source:Araport11)
AT1G09897.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G79660;(source:Araport11)
AT1G65130.4	protein_coding			Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT1G10225.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G06190.5	protein_coding		Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 2;(source:Araport11)
AT3G02850.3	protein_coding		Encodes SKOR, a member of Shaker family potassium ion (K+) channel.  This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).  Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+. Involved in response to low potassium.	STELAR K+ outward rectifier;(source:Araport11)
AT3G02850.2	protein_coding		Encodes SKOR, a member of Shaker family potassium ion (K+) channel.  This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).  Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+. Involved in response to low potassium.	STELAR K+ outward rectifier;(source:Araport11)
AT1G35183.3	protein_coding			zinc finger, C3HC4 type (RING finger) protein;(source:Araport11)
AT5G10435.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G48410.4	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 1.3;(source:Araport11)
AT5G02715.1	long_noncoding_rna			None;(source:Araport11)
AT3G06190.3	protein_coding		Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 2;(source:Araport11)
AT1G04027.1	miRNA_primary_transcript			microRNA ath-MIR2112 precursor;(source:Araport11)
AT2G16895.2	pseudogene			pseudogene of UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G08705.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G32660;(source:Araport11)
AT4G15540.2	protein_coding		nodulin MtN21-like transporter family proteinThe mRNA is cell-to-cell mobile.	EamA-like transporter family;(source:Araport11)
AT4G09770.4	protein_coding			TRAF-like family protein;(source:Araport11)
AT1G08297.1	long_noncoding_rna			None;(source:Araport11)
AT5G09475.1	long_noncoding_rna			None;(source:Araport11)
AT3G28210.2	protein_coding		Encodes a putative zinc finger protein (PMZ).	zinc finger (AN1-like) family protein;(source:Araport11)
AT3G59210.5	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT5G66530.4	protein_coding			Galactose mutarotase-like superfamily protein;(source:Araport11)
AT5G24630.9	protein_coding		This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	double-stranded DNA binding protein;(source:Araport11)
AT5G24630.8	protein_coding		This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	double-stranded DNA binding protein;(source:Araport11)
AT1G31255.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G25470.3	protein_coding			receptor like protein 21;(source:Araport11)
AT3G08225.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52040;(source:Araport11)
AT3G62970.2	protein_coding			zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT3G62970.3	protein_coding			zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT3G04915.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G25560;(source:Araport11)
AT5G00485.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G22121.2	antisense_long_noncoding_rna		Natural antisense transcript overlaps with AT3G22120. The RNA is cell-to-cell mobile.	Natural antisense transcript overlaps with AT3G22120;(source:Araport11)
AT3G05395.1	long_noncoding_rna			None;(source:Araport11)
AT5G65860.3	protein_coding			ankyrin repeat family protein;(source:Araport11)
AT4G26700.5	protein_coding		Encodes a member of the fimbrin family. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	fimbrin 1;(source:Araport11)
AT5G04905.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G28919;(source:Araport11)
AT2G47760.5	protein_coding		Encodes an &#945;-1,3-mannosyltransferase. Plants with mutations in the ALG3 protein have abnormal gylcoslation profiles. They also exhibit abnormal responses to MAMPs possibly because the glycan properties of FL22 are affected.	asparagine-linked glycosylation 3;(source:Araport11)
AT2G47760.4	protein_coding		Encodes an &#945;-1,3-mannosyltransferase. Plants with mutations in the ALG3 protein have abnormal gylcoslation profiles. They also exhibit abnormal responses to MAMPs possibly because the glycan properties of FL22 are affected.	asparagine-linked glycosylation 3;(source:Araport11)
AT4G17910.3	protein_coding			transferases, transferring acyl groups;(source:Araport11)
AT4G17910.2	protein_coding			transferases, transferring acyl groups;(source:Araport11)
AT4G31310.2	protein_coding			AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT1G05333.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17810;(source:Araport11)
AT5G06855.1	long_noncoding_rna			None;(source:Araport11)
AT1G24320.2	protein_coding			Six-hairpin glycosidases superfamily protein;(source:Araport11)
AT1G05333.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17810;(source:Araport11)
AT1G09077.1	long_noncoding_rna			None;(source:Araport11)
AT5G08475.1	long_noncoding_rna			None;(source:Araport11)
AT1G67300.7	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G04185.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G21810;(source:Araport11)
AT4G01050.2	protein_coding		hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain. Required  for anchoring the FNR flavoenzyme to the thylakoid membranes  and sustaining high efficiency photosynthetic linear electron flow.The mRNA is cell-to-cell mobile.	thylakoid rhodanese-like protein;(source:Araport11)
AT1G09357.1	long_noncoding_rna			None;(source:Araport11)
AT5G07655.1	miRNA_primary_transcript			microRNA ath-MIR5015 precursor;(source:Araport11)
AT3G13784.3	protein_coding			cell wall invertase 5;(source:Araport11)
AT3G13784.2	protein_coding			cell wall invertase 5;(source:Araport11)
AT3G14172.3	protein_coding			GPI-anchored adhesin-like protein;(source:Araport11)
AT3G13784.4	protein_coding			cell wall invertase 5;(source:Araport11)
AT5G22860.8	protein_coding			Serine carboxypeptidase S28 family protein;(source:Araport11)
AT3G58430.2	protein_coding			MATH domain/coiled-coil protein;(source:Araport11)
AT5G22860.6	protein_coding			Serine carboxypeptidase S28 family protein;(source:Araport11)
AT5G22860.7	protein_coding			Serine carboxypeptidase S28 family protein;(source:Araport11)
AT5G22860.4	protein_coding			Serine carboxypeptidase S28 family protein;(source:Araport11)
AT5G22860.5	protein_coding			Serine carboxypeptidase S28 family protein;(source:Araport11)
AT3G30775.2	protein_coding		Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress.  The promoter contains an L-proline-inducible element.	Methylenetetrahydrofolate reductase family protein;(source:Araport11)
AT5G22860.3	protein_coding			Serine carboxypeptidase S28 family protein;(source:Araport11)
AT2G06495.1	long_noncoding_rna			None;(source:Araport11)
AT1G04037.1	long_noncoding_rna			None;(source:Araport11)
AT3G04165.1	small_nucleolar_rna			None;(source:Araport11)
AT5G22770.5	protein_coding			alpha-adaptin;(source:Araport11)
AT5G15630.3	protein_coding		Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family;(source:Araport11)
AT5G36670.5	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G08930.1	long_noncoding_rna			None;(source:Araport11)
AT3G02845.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G14100;(source:Araport11)
AT2G08645.1	long_noncoding_rna			None;(source:Araport11)
AT2G07680.4	protein_coding		Encodes ABCC13/MRP11, a member of the multidrug resistance associated protein MRP/ABCC subfamily. Its expression is induced by gibberellic acid and downregulated by naphthalene acetic acid, abscisic acid, and zeatin.	multidrug resistance-associated protein 11;(source:Araport11)
AT2G07680.5	protein_coding		Encodes ABCC13/MRP11, a member of the multidrug resistance associated protein MRP/ABCC subfamily. Its expression is induced by gibberellic acid and downregulated by naphthalene acetic acid, abscisic acid, and zeatin.	multidrug resistance-associated protein 11;(source:Araport11)
AT4G30560.3	protein_coding		member of Cyclic nucleotide gated channel family	cyclic nucleotide gated channel 9;(source:Araport11)
AT4G15570.2	protein_coding		Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G30560.5	protein_coding		member of Cyclic nucleotide gated channel family	cyclic nucleotide gated channel 9;(source:Araport11)
AT4G30560.4	protein_coding		member of Cyclic nucleotide gated channel family	cyclic nucleotide gated channel 9;(source:Araport11)
AT1G20770.2	protein_coding			coiled-coil protein;(source:Araport11)
AT5G02875.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G18100;(source:Araport11)
AT3G50960.2	protein_coding		Encodes a protein that functions in microtubule assembly. PLP3a can bind to several different tubulin family members in Y2H assays. Plants with reduced levels of both PLP3a and PLP3b (At5g66410) show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.	thioredoxin domain PLP3A-like protein;(source:Araport11)
AT1G25470.uORF1-1	uORF			Derives_from AT1G25470;(source:Araport11)
AT5G55820.10	protein_coding		Encodes a plant ortholog of the inner centromere protein (INCENP), which is implicated in the control of chromosome segregation and cytokinesis in yeast and animals.  Required for female gametophytic cell specification and seed development.	inner centromere protein, ARK-binding region protein;(source:Araport11)
AT5G55820.11	protein_coding		Encodes a plant ortholog of the inner centromere protein (INCENP), which is implicated in the control of chromosome segregation and cytokinesis in yeast and animals.  Required for female gametophytic cell specification and seed development.	inner centromere protein, ARK-binding region protein;(source:Araport11)
AT3G00480.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G00480.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G38100.3	protein_coding		Encodes a nitrate transporter that is involved in nitrogen accumulation in embryos.	proton-dependent oligopeptide transport (POT) family protein;(source:Araport11)
AT3G00480.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G52660.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G09553.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G75440;(source:Araport11)
AT5G37680.2	protein_coding		A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARL GTPases.	ADP-ribosylation factor-like A1A;(source:Araport11)
AT4G19120.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G09835.1	long_noncoding_rna			None;(source:Araport11)
AT4G21520.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G05395.1	long_noncoding_rna			None;(source:Araport11)
AT2G31600.5	protein_coding			INO80 complex subunit D-like protein;(source:Araport11)
AT2G31600.4	protein_coding			INO80 complex subunit D-like protein;(source:Araport11)
AT2G31600.6	protein_coding			INO80 complex subunit D-like protein;(source:Araport11)
AT2G31600.3	protein_coding			INO80 complex subunit D-like protein;(source:Araport11)
AT1G56260.2	protein_coding		Required for the maintenance of stem cells through a reduction in DNA damage.	telomere-capping, CST complex subunit;(source:Araport11)
AT1G35220.4	protein_coding			FAM91 carboxy-terminus protein;(source:Araport11)
AT3G59850.2	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT5G22690.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G22690.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G36670.3	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G22690.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G30460.3	protein_coding		Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding  protein capable of  interacting with itself and with calmodulin. Its RNA-binding  activity is inhibited by calmodulin in a calcium-dependent fashion.	cleavage and polyadenylation specificity factor 30;(source:Araport11)
AT1G35220.3	protein_coding			FAM91 carboxy-terminus protein;(source:Araport11)
AT5G58610.10	protein_coding			PHD finger transcription factor;(source:Araport11)
AT5G52045.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G01330.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G17905.2	protein_coding		Putative RING-H2 finger protein ATL4H.	RING/U-box superfamily protein;(source:Araport11)
AT3G50610.2	protein_coding			DNA-directed RNA polymerase II subunit RPB1-like protein;(source:Araport11)
AT3G05410.3	protein_coding			Photosystem II reaction center PsbP family protein;(source:Araport11)
AT3G51570.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G09250.3	protein_coding			Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT3G27730.7	protein_coding		DNA helicase required for interference-sensitive meiotic crossover events.	DNA helicase ROCK-N-ROLLERS;(source:Araport11)
AT3G27730.6	protein_coding		DNA helicase required for interference-sensitive meiotic crossover events.	DNA helicase ROCK-N-ROLLERS;(source:Araport11)
AT3G27730.5	protein_coding		DNA helicase required for interference-sensitive meiotic crossover events.	DNA helicase ROCK-N-ROLLERS;(source:Araport11)
AT1G09543.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G75180;(source:Araport11)
AT2G04505.1	long_noncoding_rna			None;(source:Araport11)
AT3G45645.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G56555.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G07380.4	protein_coding			hypothetical protein;(source:Araport11)
AT5G03375.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G22070;(source:Araport11)
AT5G13660.7	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT5G07380.5	protein_coding			hypothetical protein;(source:Araport11)
AT1G33355.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G01435.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G07900;(source:Araport11)
AT2G09925.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G47550;(source:Araport11)
AT5G05430.2	protein_coding			RNA-binding protein;(source:Araport11)
AT2G23140.5	protein_coding		PUB4 encodes a functional ubiquitin-protein ligase. The gene is expressed in most plant tissues and the protein localizes to the nucleus. PUB4 has been recovered as a second site suppressor from several different genetic screens and from these, it has been inferred to have  roles in regulating  root development, pollen tapetum development and ROS induced chloroplast degredation.	RING/U-box superfamily protein with ARM repeat domain-containing protein;(source:Araport11)
AT2G08290.1	long_noncoding_rna			None;(source:Araport11)
AT2G27120.3	protein_coding		Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1.	DNA polymerase epsilon catalytic subunit;(source:Araport11)
AT2G27120.2	protein_coding		Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1.	DNA polymerase epsilon catalytic subunit;(source:Araport11)
AT5G54440.3	protein_coding		Encodes a putative TRAPPII tethering factor required for cell plate assembly during cytokinesis. Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	CLUB;(source:Araport11)
AT2G06200.2	protein_coding		Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower	growth-regulating factor 6;(source:Araport11)
AT5G47510.4	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G47510.3	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G47510.2	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT2G08725.1	small_nucleolar_rna			None;(source:Araport11)
AT5G19900.4	protein_coding			PRLI-interacting factor;(source:Araport11)
AT5G01030.3	protein_coding			enolase, putative (DUF3527);(source:Araport11)
AT2G04845.5	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT5G27607.1	protein_coding			JAB1/Mov34/MPN/PAD-1 ubiquitin protease;(source:Araport11)
AT1G10875.1	protein_coding			core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G28080.8	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.	Protein kinase superfamily protein;(source:Araport11)
AT1G09353.1	long_noncoding_rna			None;(source:Araport11)
AT2G21940.6	protein_coding		Encodes a shikimate kinase. Its transcripts appear to be expressed most highly in mature embryos and senescing leaves, and its transcript levels rise during heat stress and recovery. It is believed to be localized to the chloroplast.	shikimate kinase 1;(source:Araport11)
AT5G28080.3	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.	Protein kinase superfamily protein;(source:Araport11)
AT1G36623.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G28080.6	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.	Protein kinase superfamily protein;(source:Araport11)
AT3G56550.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G05865.1	long_noncoding_rna			None;(source:Araport11)
AT5G28080.5	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.	Protein kinase superfamily protein;(source:Araport11)
AT5G03325.1	long_noncoding_rna			None;(source:Araport11)
AT1G08613.1	long_noncoding_rna			None;(source:Araport11)
AT3G05900.2	protein_coding			neurofilament protein-like protein;(source:Araport11)
AT1G65875.2	pseudogene			pseudogene of AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT2G42365.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42360 and AT2G42370;(source:Araport11)
AT2G42365.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42360 and AT2G42370;(source:Araport11)
AT2G42365.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42360 and AT2G42370;(source:Araport11)
AT2G07555.1	long_noncoding_rna			None;(source:Araport11)
AT2G42365.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42360 and AT2G42370;(source:Araport11)
AT5G47800.2	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G38480.3	protein_coding		general regulatory factor, a 14-3-3 gene	general regulatory factor 3;(source:Araport11)
AT5G46490.8	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G33350.3	protein_coding			CCT motif family protein;(source:Araport11)
AT5G49470.5	protein_coding		Encodes a protein with similarity to RAF MAP Kinase that is expressed in most plant tissues. Based on loss of function and gain of function phenotypes, RAF10 appears to be involved in ABA response.	PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT3G24575.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G33350.4	protein_coding			CCT motif family protein;(source:Araport11)
AT5G19420.3	protein_coding			Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT5G00870.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G02590;(source:Araport11)
AT5G46490.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G46490.5	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G00545.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00545.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G46490.6	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G39720.4	protein_coding			VQ motif-containing protein;(source:Araport11)
AT1G07780.7	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT2G29910.6	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT5G53486.5	protein_coding			transmembrane protein;(source:Araport11)
AT4G39720.2	protein_coding			VQ motif-containing protein;(source:Araport11)
AT4G39720.3	protein_coding			VQ motif-containing protein;(source:Araport11)
AT5G25370.3	protein_coding		member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.	phospholipase D alpha 3;(source:Araport11)
AT5G25370.2	protein_coding		member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.	phospholipase D alpha 3;(source:Araport11)
AT3G49220.3	protein_coding			Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT1G07780.8	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT1G07780.9	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT3G01475.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G22370.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G08603.1	long_noncoding_rna			None;(source:Araport11)
AT5G00850.1	long_noncoding_rna			None;(source:Araport11)
AT5G07100.5	protein_coding		Encodes WRKY DNA-binding protein 26 (WRKY26).	WRKY DNA-binding protein 26;(source:Araport11)
AT5G26955.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G19030.5	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G19030.4	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G23985.16	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.17	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.14	protein_coding			hypothetical protein;(source:Araport11)
AT3G00880.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G23985.12	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.13	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.10	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.11	protein_coding			hypothetical protein;(source:Araport11)
AT5G66210.5	protein_coding		Calcium Dependent Protein Kinase. Functions in the BIK1 innate immune response pathway.	calcium-dependent protein kinase 28;(source:Araport11)
AT4G14550.4	protein_coding		IAA14 is a member of the Aux/IAA protein family.   Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19.	indole-3-acetic acid inducible 14;(source:Araport11)
AT5G66210.6	protein_coding		Calcium Dependent Protein Kinase. Functions in the BIK1 innate immune response pathway.	calcium-dependent protein kinase 28;(source:Araport11)
AT4G14550.2	protein_coding		IAA14 is a member of the Aux/IAA protein family.   Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19.	indole-3-acetic acid inducible 14;(source:Araport11)
AT4G14550.3	protein_coding		IAA14 is a member of the Aux/IAA protein family.   Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19.	indole-3-acetic acid inducible 14;(source:Araport11)
AT2G23985.18	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.19	protein_coding			hypothetical protein;(source:Araport11)
AT1G06960.5	protein_coding		Similar to U2B'. Functions in  cold stress induced alternative splicing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G06960.4	protein_coding		Similar to U2B'. Functions in  cold stress induced alternative splicing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G25434.13	protein_coding			nudix hydrolase homolog 10;(source:Araport11)
AT1G06960.6	protein_coding		Similar to U2B'. Functions in  cold stress induced alternative splicing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G63780.2	protein_coding		Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance.  The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage.	RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G24515.3	protein_coding			ubiquitin-conjugating enzyme 37;(source:Araport11)
AT4G30260.2	protein_coding		Encodes one of the two YPT/RAB GTPase Interacting Protein 4a (YIP4a) and YIP4b (formerly YIP2), which form a TGN-localized complex with ECHIDNA (ECH). This complex is required for the secretion of cell wall polysaccharides.	Integral membrane Yip1 family protein;(source:Araport11)
AT3G48190.2	protein_coding		Encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder.  Characterization of mutants suggest a role homologous recombination for DNA damage repair in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.	Serine/Threonine-kinase ATM-like protein;(source:Araport11)
AT3G48190.3	protein_coding		Encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder.  Characterization of mutants suggest a role homologous recombination for DNA damage repair in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.	Serine/Threonine-kinase ATM-like protein;(source:Araport11)
AT4G20947.1	protein_coding			putative RNA-binding protein;(source:Araport11)
AT3G24515.4	protein_coding			ubiquitin-conjugating enzyme 37;(source:Araport11)
AT5G06915.1	long_noncoding_rna			None;(source:Araport11)
AT2G09465.1	small_nucleolar_rna			None;(source:Araport11)
AT3G52890.3	protein_coding		KCBP-interacting protein kinase interacts specifically with the tail region of KCBP	KCBP-interacting protein kinase;(source:Araport11)
AT5G09525.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial;(source:Araport11)
AT2G41470.2	protein_coding			agamous-like MADS-box protein;(source:Araport11)
AT3G52890.4	protein_coding		KCBP-interacting protein kinase interacts specifically with the tail region of KCBP	KCBP-interacting protein kinase;(source:Araport11)
AT1G08723.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G64630;(source:Araport11)
AT1G21350.5	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT3G05595.1	long_noncoding_rna			None;(source:Araport11)
AT2G04100.2	protein_coding			MATE efflux family protein;(source:Araport11)
AT1G70475.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G08455.1	long_noncoding_rna			None;(source:Araport11)
AT2G40830.4	protein_coding		Encodes an E3 ubiquitin ligase for the GA-receptor GID1 that functions as a negative regulator of GA signaling in seedlings and seeds by inducing ubiquitin-dependent proteolysis of GID1s. Tyr321 phosphorylation of GARU by TAGK2 inactivates GARU.	RING-H2 finger C1A;(source:Araport11)
AT1G20270.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G66600.5	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT1G74160.2	protein_coding		Member of a small gene family in Arabidopsis. Quadruple mutants in this family display defects in cell elongation.	LONGIFOLIA protein;(source:Araport11)
AT1G74160.3	protein_coding		Member of a small gene family in Arabidopsis. Quadruple mutants in this family display defects in cell elongation.	LONGIFOLIA protein;(source:Araport11)
AT2G09070.1	long_noncoding_rna			None;(source:Araport11)
AT4G05295.1	long_noncoding_rna			None;(source:Araport11)
AT3G54980.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G24080.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G10570.3	protein_coding		Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation.	Cysteine proteinases superfamily protein;(source:Araport11)
AT5G06185.1	long_noncoding_rna			None;(source:Araport11)
AT1G61940.2	protein_coding		Member of TLP family	tubby like protein 4;(source:Araport11)
AT5G24080.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G49420.3	protein_coding			Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT3G49420.2	protein_coding			Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT5G00815.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G02140;(source:Araport11)
AT2G21930.2	protein_coding		A paternally expressed imprinted gene.	F-box associated ubiquitination effector family protein;(source:Araport11)
AT4G24610.4	protein_coding			pesticidal crystal cry8Ba protein;(source:Araport11)
AT4G31398.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G31400;(source:Araport11)
AT4G04435.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G03140;(source:Araport11)
AT2G07940.1	long_noncoding_rna			None;(source:Araport11)
AT1G80810.4	protein_coding		One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT1G80810.3	protein_coding		One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT4G18596.2	protein_coding			Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G00845.1	long_noncoding_rna			None;(source:Araport11)
AT5G27710.2	protein_coding			T-box protein;(source:Araport11)
AT5G06880.1	long_noncoding_rna			None;(source:Araport11)
AT5G54569.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G54570;(source:Araport11)
AT5G54569.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G54570;(source:Araport11)
AT5G54569.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G54570;(source:Araport11)
AT1G73820.2	protein_coding		Protein phosphatase which physically interacts with the RRM1 motif of FCA to antagonize FCA binding with COOLAIR, which is critical for PRC2 enrichment and H3K27me3 deposition.	Ssu72-like family protein;(source:Araport11)
AT1G06693.1	long_noncoding_rna			None;(source:Araport11)
AT1G65486.4	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT1G80800.2	pseudogene			pseudogene of Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein;(source:Araport11)
AT5G39720.2	protein_coding			avirulence induced protein 2 like protein;(source:Araport11)
AT3G62220.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G06143.1	protein_coding			basic helix loop helix DNA-binding superfamily protein;(source:Araport11)
AT5G04670.2	protein_coding		Polycomb related protein that is part of a protein complex involved in histone deacetylation and heterochromatin silencing.	Enhancer of polycomb-like transcription factor protein;(source:Araport11)
AT5G46800.3	protein_coding		Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein	Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G80500.2	protein_coding		Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	SNARE-like superfamily protein;(source:Araport11)
AT3G03520.2	protein_coding		Lysophosphatidic acid phosphatase highly expressed during phosphate starvation and abiotic stresses.  Role in lipid synthesis.	non-specific phospholipase C3;(source:Araport11)
AT4G16890.2	protein_coding		Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu-  rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.	TIR-NBS-LRR class disease resistance protein;(source:Araport11)
AT2G47620.2	protein_coding		Homologous to yeast SWI3 and a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3C, the other two members of the SWI3 family.	SWITCH/sucrose nonfermenting 3A;(source:Araport11)
AT3G28415.2	protein_coding			ABC transporter family protein;(source:Araport11)
AT2G04945.1	long_noncoding_rna			None;(source:Araport11)
AT4G28550.3	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT4G28550.2	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT1G66410.3	protein_coding		encodes a calmodulin	calmodulin 4;(source:Araport11)
AT4G08125.1	small_nucleolar_rna			None;(source:Araport11)
AT3G16660.2	protein_coding			Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT3G09075.1	long_noncoding_rna			None;(source:Araport11)
AT3G21920.2	protein_coding			cysteine-rich repeat secretory protein, putative (DUF26);(source:Araport11)
AT1G66410.4	protein_coding		encodes a calmodulin	calmodulin 4;(source:Araport11)
AT2G26350.5	protein_coding		Zinc-binding peroxisomal integral membrane protein (PEX10). Inserted directly from the cytosol into peroxisomes and is involved in importing proteins into the peroxisome. Required for embryogenesis.	peroxin 10;(source:Araport11)
AT2G26350.4	protein_coding		Zinc-binding peroxisomal integral membrane protein (PEX10). Inserted directly from the cytosol into peroxisomes and is involved in importing proteins into the peroxisome. Required for embryogenesis.	peroxin 10;(source:Araport11)
AT2G26350.3	protein_coding		Zinc-binding peroxisomal integral membrane protein (PEX10). Inserted directly from the cytosol into peroxisomes and is involved in importing proteins into the peroxisome. Required for embryogenesis.	peroxin 10;(source:Araport11)
AT2G26350.2	protein_coding		Zinc-binding peroxisomal integral membrane protein (PEX10). Inserted directly from the cytosol into peroxisomes and is involved in importing proteins into the peroxisome. Required for embryogenesis.	peroxin 10;(source:Araport11)
AT5G61250.3	protein_coding		Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-&#946;-GlcNAc attachment sites and serine-, threonine- and  tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted  (WoLF PSORT program) to be secreted.	glucuronidase 1;(source:Araport11)
AT3G21940.2	protein_coding			Receptor protein kinase-like protein;(source:Araport11)
AT3G03735.1	long_noncoding_rna			None;(source:Araport11)
AT1G17065.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G22140.3	protein_coding		Encoding a chromatin remodeling  factor that regulates flowering time.	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT2G08470.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G31790;(source:Araport11)
AT1G26200.2	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G26200.3	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT4G16670.3	protein_coding		FORKED-LIKE family member, part of Group 3 (Group 1 consists of FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT4G16670.2	protein_coding		FORKED-LIKE family member, part of Group 3 (Group 1 consists of FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT1G09855.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G61100.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G24300.3	protein_coding			GYF domain-containing protein;(source:Araport11)
AT3G14940.2	protein_coding		Encodes a cytosolic phosphoenolpyruvate carboxylase (PEPC) that has activity when expressed in E.coli. Its mRNA is most abundantly expressed in roots and siliques. PPC3 belongs to the plant-type PEPC family. It can form an enzymatically active complex with a castor bean ortholog of PPC4, which encodes a bacterial-type PEPC.The mRNA is cell-to-cell mobile.	phosphoenolpyruvate carboxylase 3;(source:Araport11)
AT5G14180.3	protein_coding			Myzus persicae-induced lipase 1;(source:Araport11)
AT3G09600.5	protein_coding		Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. Functions as a transcriptional activator of evening element containing clock genes. Involved in heat shock response.	Homeodomain-like superfamily protein;(source:Araport11)
AT2G23445.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G09600.4	protein_coding		Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. Functions as a transcriptional activator of evening element containing clock genes. Involved in heat shock response.	Homeodomain-like superfamily protein;(source:Araport11)
AT2G04315.1	long_noncoding_rna			None;(source:Araport11)
AT3G08270.1	long_noncoding_rna			None;(source:Araport11)
AT5G01850.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G08153.1	long_noncoding_rna			None;(source:Araport11)
AT1G13890.2	protein_coding		Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.	soluble N-ethylmaleimide-sensitive factor adaptor protein 30;(source:Araport11)
AT5G38810.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G10740.3	protein_coding		Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases.  It may be involved in cell wall modification.	alpha-L-arabinofuranosidase 1;(source:Araport11)
AT1G54050.2	protein_coding			HSP20-like chaperones superfamily protein;(source:Araport11)
AT4G30820.16	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT2G39930.3	protein_coding		Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex.	isoamylase 1;(source:Araport11)
AT2G39930.2	protein_coding		Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex.	isoamylase 1;(source:Araport11)
AT3G06250.3	protein_coding			FAR1-related sequence 7;(source:Araport11)
AT3G06250.2	protein_coding			FAR1-related sequence 7;(source:Araport11)
AT2G04375.1	small_nuclear_rna			U2;(source:Araport11)
AT2G38810.4	protein_coding		Encodes HTA8, a histone H2A protein. Loss of all H2A.Z (triple mutant with HTA9 and HTA11) results in a reduction in DNA methylation of transposons but not that of genes.  Loss of H2A.Z causes misregulation of many genes involved in the response to developmental and environmental cues, and that these genes tend to have high levels of gene-body H2A.Z.	histone H2A 8;(source:Araport11)
AT4G38930.3	protein_coding			Ubiquitin fusion degradation UFD1 family protein;(source:Araport11)
AT1G65280.2	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G27630.6	protein_coding			cyclin T 1;(source:Araport11)
AT1G13880.2	protein_coding			ELM2 domain-containing protein;(source:Araport11)
AT1G13880.3	protein_coding			ELM2 domain-containing protein;(source:Araport11)
AT3G21230.4	protein_coding		The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order:  p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.	4-coumarate:CoA ligase 5;(source:Araport11)
AT1G07837.1	long_noncoding_rna			None;(source:Araport11)
AT3G26510.6	protein_coding			Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT3G26510.7	protein_coding			Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT1G63130.2	protein_coding		Transacting siRNA generating locus. Its derived siR9as targets AT1G62930 for cleavage. Itself is targeted by TAS2-derived ta-siR2140 for cleavage.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G24545.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G24540;(source:Araport11)
AT3G21230.3	protein_coding		The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order:  p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.	4-coumarate:CoA ligase 5;(source:Araport11)
AT2G19010.2	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G57950.2	protein_coding			26S proteasome regulatory subunit;(source:Araport11)
AT1G12740.3	protein_coding		encodes a protein with cytochrome P450 domain	cytochrome P450, family 87, subfamily A, polypeptide 2;(source:Araport11)
AT1G12740.4	protein_coding		encodes a protein with cytochrome P450 domain	cytochrome P450, family 87, subfamily A, polypeptide 2;(source:Araport11)
AT1G29750.3	protein_coding		Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains.	receptor-like kinase in flowers 1;(source:Araport11)
AT2G30260.2	protein_coding		encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled  body and the nucleus.	U2 small nuclear ribonucleoprotein B;(source:Araport11)
AT1G72250.4	protein_coding			Di-glucose binding protein with Kinesin motor domain-containing protein;(source:Araport11)
AT4G32570.2	protein_coding			TIFY domain protein 8;(source:Araport11)
AT5G07735.1	small_nucleolar_rna			None;(source:Araport11)
AT3G23340.2	protein_coding		Member of CKL gene family (CKL-C group).	casein kinase I-like 10;(source:Araport11)
AT1G72250.3	protein_coding			Di-glucose binding protein with Kinesin motor domain-containing protein;(source:Araport11)
AT1G29435.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G05240.2	protein_coding			cation-transporting ATPase;(source:Araport11)
AT5G02145.1	long_noncoding_rna			None;(source:Araport11)
AT1G55810.5	protein_coding		One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 3;(source:Araport11)
AT1G55810.4	protein_coding		One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 3;(source:Araport11)
AT1G04177.1	long_noncoding_rna			None;(source:Araport11)
AT1G55810.6	protein_coding		One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 3;(source:Araport11)
AT3G46370.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G22930.2	protein_coding		Encodes dihydroorotase (PYR4).	pyrimidin 4;(source:Araport11)
AT4G06695.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G17390;(source:Araport11)
AT1G04917.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G11900;(source:Araport11)
AT3G46500.10	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G52270.2	protein_coding			SNARE-like superfamily protein;(source:Araport11)
AT5G03475.1	miRNA_primary_transcript			microRNA ath-MIR3434 precursor;(source:Araport11)
AT1G04787.1	long_noncoding_rna			None;(source:Araport11)
AT2G30950.4	protein_coding		Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. In plsp1-1 mutant plastids, the nonmature form of the protein localizes in the membrane.	FtsH extracellular protease family;(source:Araport11)
AT1G08143.1	long_noncoding_rna			None;(source:Araport11)
AT2G30950.2	protein_coding		Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. In plsp1-1 mutant plastids, the nonmature form of the protein localizes in the membrane.	FtsH extracellular protease family;(source:Araport11)
AT2G30950.3	protein_coding		Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. In plsp1-1 mutant plastids, the nonmature form of the protein localizes in the membrane.	FtsH extracellular protease family;(source:Araport11)
AT5G25150.2	protein_coding		Encodes a putative TATA-binding-protein associated factor TAF5.  TAFs are subunits of the general transcription factor IID (TFIID).	TBP-associated factor 5;(source:Araport11)
AT1G06833.4	novel_transcribed_region			novel transcribed region; detected in carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT1G06833.5	novel_transcribed_region			novel transcribed region; detected in carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT2G19230.2	protein_coding			Leucine-rich repeat transmembrane protein kinase protein;(source:Araport11)
AT4G01870.2	protein_coding			tolB protein-like protein;(source:Araport11)
AT1G06833.2	novel_transcribed_region			novel transcribed region; detected in carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT1G18700.5	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G02880.2	protein_coding		encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.The mRNA is cell-to-cell mobile.	ubiquitin-protein ligase 4;(source:Araport11)
AT5G63840.2	protein_coding		radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.	Glycosyl hydrolases family 31 protein;(source:Araport11)
AT3G00290.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G26670.4	protein_coding			Pectinacetylesterase family protein;(source:Araport11)
AT5G26670.3	protein_coding			Pectinacetylesterase family protein;(source:Araport11)
AT5G52115.1	protein_coding			ribonuclease H superfamily polynucleotidyl transferase;(source:Araport11)
AT1G65349.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G17680.3	protein_coding			Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT1G72640.3	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G34090.5	protein_coding			maternal effect embryo arrest 18;(source:Araport11)
AT2G34090.4	protein_coding			maternal effect embryo arrest 18;(source:Araport11)
AT3G14210.2	protein_coding		A semidominant QTL which has an epistatic effect on the Epithiospecifier gene. Represses nitrile formation and favors isothiocyanate production during glucosinolate hydrolysis. The functional allele deters the insect herbivory T. ni.	GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT1G72640.4	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G26660.2	protein_coding			myb domain protein 86;(source:Araport11)
AT2G47410.4	protein_coding			WD40 domain-containing protein;(source:Araport11)
AT1G07383.1	long_noncoding_rna			None;(source:Araport11)
AT4G06890.1	long_noncoding_rna			None;(source:Araport11)
AT2G09090.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G39930;(source:Araport11)
AT1G04963.1	long_noncoding_rna			None;(source:Araport11)
AT2G00930.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G19080.3	protein_coding			SWIB complex BAF60b domain-containing protein;(source:Araport11)
AT5G08515.1	small_nucleolar_rna			None;(source:Araport11)
AT1G20510.3	protein_coding			OPC-8:0 CoA ligase1;(source:Araport11)
AT4G26640.7	protein_coding		member of WRKY Transcription Factor; Group I	WRKY family transcription factor family protein;(source:Araport11)
AT3G49832.2	pseudogene		pseudogene of kelch repeat-containing F-box family	pseudogene of Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G26640.6	protein_coding		member of WRKY Transcription Factor; Group I	WRKY family transcription factor family protein;(source:Araport11)
AT2G43500.9	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT2G09080.1	miRNA_primary_transcript			microRNA ath-MIR8121 precursor;(source:Araport11)
AT4G35110.6	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G35110.5	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT5G03025.1	long_noncoding_rna			None;(source:Araport11)
AT4G26640.3	protein_coding		member of WRKY Transcription Factor; Group I	WRKY family transcription factor family protein;(source:Araport11)
AT4G14840.2	protein_coding			spindle assembly abnormal protein;(source:Araport11)
AT4G14840.3	protein_coding			spindle assembly abnormal protein;(source:Araport11)
AT1G04083.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G01910;(source:Araport11)
AT4G07565.1	miRNA_primary_transcript			microRNA ath-MIR5635c precursor;(source:Araport11)
AT2G27450.3	protein_coding		Encodes N-carbamoylputrescine amidohydrolase that is involved in putrescine and polyamine biosynthesis.	nitrilase-like protein 1;(source:Araport11)
AT4G35375.1	protein_coding			exodeoxyribonuclease VII, small subunit;(source:Araport11)
AT4G06825.1	long_noncoding_rna			None;(source:Araport11)
AT1G04323.1	long_noncoding_rna			None;(source:Araport11)
AT4G09915.1	long_noncoding_rna			None;(source:Araport11)
AT4G30420.2	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G06710.10	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G04067.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G01840;(source:Araport11)
AT1G07913.1	long_noncoding_rna			None;(source:Araport11)
AT4G03385.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G63340.9	protein_coding			kinase superfamily protein;(source:Araport11)
AT3G02735.1	long_noncoding_rna			None;(source:Araport11)
AT1G18750.6	protein_coding		Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.	AGAMOUS-like 65;(source:Araport11)
AT4G28820.5	protein_coding			HIT-type Zinc finger family protein;(source:Araport11)
AT5G21120.2	protein_coding		ethylene-insensitive3-like2 (EIL2)	ETHYLENE-INSENSITIVE3-like 2;(source:Araport11)
AT5G21120.3	protein_coding		ethylene-insensitive3-like2 (EIL2)	ETHYLENE-INSENSITIVE3-like 2;(source:Araport11)
AT1G07393.1	small_nucleolar_rna			None;(source:Araport11)
AT1G65790.3	protein_coding		An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain.	receptor kinase 1;(source:Araport11)
AT5G57700.5	protein_coding			BNR/Asp-box repeat family protein;(source:Araport11)
AT3G54140.2	protein_coding		Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. GFP-tagged PTR1 localizes to the plasma membrane and has 8 to 11 predicted transmembrane domains. PTR1 is expressed in a number of different vascular tissues throughout the plant based on promoter:GUS expression analysis. ptr1 mutants have a lower dry weight than wild type plants when both are grown with Pro-Ala or Ala-Ala dipeptides as their nitrogen source, suggesting that PTR1 plays a role in dipeptide uptake in the roots. Furthermore N content of ptr1 mutants is lower than that of wild type plants when grown with Pro-Ala or a mixture of dipeptides as nitrogen source	peptide transporter 1;(source:Araport11)
AT1G65790.2	protein_coding		An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain.	receptor kinase 1;(source:Araport11)
AT5G09535.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G65960;(source:Araport11)
AT1G02705.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G00940.2	protein_coding			Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT4G00940.3	protein_coding			Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT3G07685.1	miRNA_primary_transcript			microRNA ath-MIR2933b precursor;(source:Araport11)
AT4G33630.3	protein_coding		Encodes one of the two plastid proteins EXECUTER (EX1, AT4G33630) and EX2 (AT1G27510). Mediates singlet oxygen induced programmed cell death.	UvrB/UvrC domain protein (DUF3506);(source:Araport11)
AT5G04840.2	protein_coding			bZIP protein;(source:Araport11)
AT5G49840.3	protein_coding			ATP-dependent Clp protease;(source:Araport11)
AT5G38550.2	protein_coding		Jacalin lectin family protein gene	Mannose-binding lectin superfamily protein;(source:Araport11)
AT4G26460.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G36980.2	protein_coding			transmembrane 50A-like protein;(source:Araport11)
AT3G24360.5	protein_coding			ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT1G70180.5	protein_coding			Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT2G01830.4	protein_coding		Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane	CHASE domain containing histidine kinase protein;(source:Araport11)
AT5G01755.1	miRNA_primary_transcript			microRNA ath-MIR8184 precursor;(source:Araport11)
AT5G07485.1	long_noncoding_rna			None;(source:Araport11)
AT2G14120.4	protein_coding		Encodes a dynamin related protein. DRPs are self-assembling GTPasse involved in fission and fusion of membranes. DRP3B functions in mitochondrion and peroxisome fission in combination with DRP3A.	dynamin related protein;(source:Araport11)
AT5G10660.3	protein_coding			calmodulin-binding protein-like protein;(source:Araport11)
AT1G47930.2	pseudogene			pseudogene of Glutamyl/glutaminyl-tRNA synthetase;(source:Araport11)
AT4G17330.3	protein_coding		gene of unknown function expressed in seedlings, flower buds and stems	G2484-1 protein;(source:Araport11)
AT4G17330.2	protein_coding		gene of unknown function expressed in seedlings, flower buds and stems	G2484-1 protein;(source:Araport11)
AT1G06493.1	long_noncoding_rna			None;(source:Araport11)
AT4G22463.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G07350.3	protein_coding		Encodes a serine/arginine rich-like protein, SR45a. Involved in the regulation of stress-responsive alternative splicing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G26480.2	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT1G07350.5	protein_coding		Encodes a serine/arginine rich-like protein, SR45a. Involved in the regulation of stress-responsive alternative splicing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G07350.4	protein_coding		Encodes a serine/arginine rich-like protein, SR45a. Involved in the regulation of stress-responsive alternative splicing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G07350.6	protein_coding		Encodes a serine/arginine rich-like protein, SR45a. Involved in the regulation of stress-responsive alternative splicing.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G04077.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G01900;(source:Araport11)
AT5G01735.1	miRNA_primary_transcript			microRNA ath-MIR5998b precursor;(source:Araport11)
AT1G04830.3	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT1G79070.2	protein_coding			SNARE-associated protein-like protein;(source:Araport11)
AT3G17120.5	protein_coding			transmembrane protein;(source:Araport11)
AT5G42700.2	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT4G35300.10	protein_coding			tonoplast monosaccharide transporter2;(source:Araport11)
AT5G66110.3	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT2G08135.1	antisense_rna			Natural antisense transcript overlaps with AT2G25930;(source:Araport11)
AT2G09585.1	long_noncoding_rna			None;(source:Araport11)
AT2G08885.1	long_noncoding_rna			None;(source:Araport11)
AT5G02955.1	long_noncoding_rna			None;(source:Araport11)
AT4G25434.9	protein_coding			nudix hydrolase homolog 10;(source:Araport11)
AT5G03685.1	long_noncoding_rna			None;(source:Araport11)
AT3G08315.1	long_noncoding_rna			None;(source:Araport11)
AT3G06505.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower;(source:Araport11)
AT3G06505.2	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower;(source:Araport11)
AT3G06505.3	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower;(source:Araport11)
AT4G38470.3	protein_coding			ACT-like protein tyrosine kinase family protein;(source:Araport11)
AT3G09665.1	long_noncoding_rna			None;(source:Araport11)
AT5G18780.4	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT5G18780.3	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT2G07275.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G20240;(source:Araport11)
AT1G34180.3	protein_coding			NAC domain containing protein 16;(source:Araport11)
AT2G44680.3	protein_coding		Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.	casein kinase II beta subunit 4;(source:Araport11)
AT4G23515.2	protein_coding			Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT3G63255.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G34180.4	protein_coding			NAC domain containing protein 16;(source:Araport11)
AT5G04355.1	long_noncoding_rna			None;(source:Araport11)
AT2G23780.2	protein_coding		Leucine rich extensin protein involved in cell wall biogenesis and organization. Interacts with several members of the RALF family of ligand peptides.	RING/U-box superfamily protein;(source:Araport11)
AT4G05175.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT2G09505.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G43840;(source:Araport11)
AT2G43500.3	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT2G39720.2	protein_coding		Encodes a putative RING-H2 finger protein RHC2a.	RING-H2 finger C2A;(source:Araport11)
AT1G75760.3	protein_coding			ER lumen protein retaining receptor family protein;(source:Araport11)
AT1G75760.2	protein_coding			ER lumen protein retaining receptor family protein;(source:Araport11)
AT5G41320.2	protein_coding			stress response NST1-like protein;(source:Araport11)
AT2G08485.1	long_noncoding_rna			None;(source:Araport11)
AT3G07635.1	other_rna			None;(source:Araport11)
AT4G32295.4	protein_coding			histone acetyltransferase;(source:Araport11)
AT5G45370.4	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G45370.6	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G07635.1	long_noncoding_rna			None;(source:Araport11)
AT4G32295.3	protein_coding			histone acetyltransferase;(source:Araport11)
AT1G16800.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G16800.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G57230.3	protein_coding		MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. AGL16 can directly interact with SVP and indirectly interact with FLC. Furthermore, the accumulation of AGL16 transcripts is modulated by miR824 (AT4G24415). The flowering time effect for the miR824/AGL16 module is more obvious in the Col-FRI background than in the Col-0 background. AGL16 controls flowering via a allelic dosage effect in long-day non-vernalized conditions.	AGAMOUS-like 16;(source:Araport11)
AT3G07845.1	long_noncoding_rna			None;(source:Araport11)
AT3G57230.5	protein_coding		MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. AGL16 can directly interact with SVP and indirectly interact with FLC. Furthermore, the accumulation of AGL16 transcripts is modulated by miR824 (AT4G24415). The flowering time effect for the miR824/AGL16 module is more obvious in the Col-FRI background than in the Col-0 background. AGL16 controls flowering via a allelic dosage effect in long-day non-vernalized conditions.	AGAMOUS-like 16;(source:Araport11)
AT3G57230.4	protein_coding		MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. AGL16 can directly interact with SVP and indirectly interact with FLC. Furthermore, the accumulation of AGL16 transcripts is modulated by miR824 (AT4G24415). The flowering time effect for the miR824/AGL16 module is more obvious in the Col-FRI background than in the Col-0 background. AGL16 controls flowering via a allelic dosage effect in long-day non-vernalized conditions.	AGAMOUS-like 16;(source:Araport11)
AT4G36870.3	protein_coding		Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw2 may act redundantly to repress BP in leaves.	BEL1-like homeodomain 2;(source:Araport11)
AT1G65040.5	protein_coding		Encodes one of the Arabidopsis homologs of the yeast/human Hrd1 protein: AT3G16090 (Hrd1A), AT1G65040 (Hrd1B). Involved in ERAD (Endoplasmic reticulum-associated degradation).	RING/U-box superfamily protein;(source:Araport11)
AT1G65040.4	protein_coding		Encodes one of the Arabidopsis homologs of the yeast/human Hrd1 protein: AT3G16090 (Hrd1A), AT1G65040 (Hrd1B). Involved in ERAD (Endoplasmic reticulum-associated degradation).	RING/U-box superfamily protein;(source:Araport11)
AT4G19003.6	protein_coding			E2F/DP family winged-helix DNA-binding domain-containing protein;(source:Araport11)
AT1G65040.6	protein_coding		Encodes one of the Arabidopsis homologs of the yeast/human Hrd1 protein: AT3G16090 (Hrd1A), AT1G65040 (Hrd1B). Involved in ERAD (Endoplasmic reticulum-associated degradation).	RING/U-box superfamily protein;(source:Araport11)
AT1G59710.2	protein_coding			actin cross-linking protein (DUF569);(source:Araport11)
AT1G59710.3	protein_coding			actin cross-linking protein (DUF569);(source:Araport11)
AT1G08533.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G62580;(source:Araport11)
AT4G04710.2	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent kinase-like protein;(source:Araport11)
AT3G62060.2	protein_coding			Pectinacetylesterase family protein;(source:Araport11)
AT5G45710.4	protein_coding		member of Heat Stress Transcription Factor (Hsf) family	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT3G01710.4	protein_coding			TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT1G06933.1	long_noncoding_rna			None;(source:Araport11)
AT1G17145.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G07130.2	protein_coding		putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	laccase 13;(source:Araport11)
AT4G16950.3	protein_coding		Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G09875.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G08737.1	small_nuclear_rna			U5;(source:Araport11)
AT5G05485.1	long_noncoding_rna			None;(source:Araport11)
AT4G07815.1	long_noncoding_rna			None;(source:Araport11)
AT4G13990.2	protein_coding			Exostosin family protein;(source:Araport11)
AT2G09490.1	long_noncoding_rna			None;(source:Araport11)
AT3G02885.2	protein_coding		GASA5, is involved in the regulation  of seedling thermotolerance.	GAST1 protein homolog 5;(source:Araport11)
AT3G03075.1	long_noncoding_rna			None;(source:Araport11)
AT4G22530.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G18840.3	protein_coding			LOW protein: PPR containing-like protein;(source:Araport11)
AT1G05097.1	long_noncoding_rna			None;(source:Araport11)
AT4G23450.5	protein_coding		AtAIRP1 gene encodes a C3H2C3-type RING E3 Ub ligase. It has been shown to be a positive regulator in the Arabidopsis ABA-dependent drought response.	RING/U-box superfamily protein;(source:Araport11)
AT2G33860.2	protein_coding		ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia.  ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top  of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium.  It is a target of the ta-siRNA tasiR-ARF. ETT is also a target of AP2; integrateing the functions of AGAMOUS and APETALA2 in floral meristem determinacy. Positive regulation of drought stress response genes.	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein;(source:Araport11)
AT1G52360.4	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT4G23450.6	protein_coding		AtAIRP1 gene encodes a C3H2C3-type RING E3 Ub ligase. It has been shown to be a positive regulator in the Arabidopsis ABA-dependent drought response.	RING/U-box superfamily protein;(source:Araport11)
AT1G50300.2	protein_coding			TBP-associated factor 15;(source:Araport11)
AT1G80060.3	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT1G61610.2	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G80060.4	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT1G80060.5	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT1G07330.2	protein_coding			dentin sialophosphoprotein;(source:Araport11)
AT3G16700.4	protein_coding			Fumarylacetoacetate (FAA) hydrolase family;(source:Araport11)
AT2G47410.3	protein_coding			WD40 domain-containing protein;(source:Araport11)
AT5G25560.5	protein_coding			CHY-type/CTCHY-type/RING-type Zinc finger protein;(source:Araport11)
AT5G27060.3	protein_coding			receptor like protein 53;(source:Araport11)
AT5G27060.2	protein_coding			receptor like protein 53;(source:Araport11)
AT1G20803.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT2G08230.1	long_noncoding_rna			None;(source:Araport11)
AT2G48160.2	protein_coding		HUA and HUA-LIKE (HULK) genes act redundantly to regulate a subset of essential genes, with some (or all) family members also having specific functions.	Tudor/PWWP/MBT domain-containing protein;(source:Araport11)
AT1G61050.2	protein_coding			alpha 1,4-glycosyltransferase family protein;(source:Araport11)
AT3G02060.3	protein_coding			DEAD/DEAH box helicase;(source:Araport11)
AT3G03655.1	long_noncoding_rna			None;(source:Araport11)
AT3G02410.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G24450.2	protein_coding			phosphoglucan, water dikinase;(source:Araport11)
AT4G24450.3	protein_coding			phosphoglucan, water dikinase;(source:Araport11)
AT1G35730.2	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.	pumilio 9;(source:Araport11)
AT1G07117.1	long_noncoding_rna			None;(source:Araport11)
AT2G01000.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G51740.2	protein_coding		member of SYP8 Gene Family	syntaxin of plants 81;(source:Araport11)
AT2G07895.1	miRNA_primary_transcript			microRNA ath-MIR5016 precursor;(source:Araport11)
AT4G24860.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G24860.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G24860.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G27010.2	protein_coding		Belongs to a TCP protein transcription factor family. Members of this family contain a predicted basic-helix-loop-helix domain involved in DNA binding. Related to rice PCF1 and PCF2 genes. Binds to the GCCCR element of CYCB1;1. Involved in regulation of expression of cell cycle control and ribosomal protein genes.	TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20;(source:Araport11)
AT2G07855.1	long_noncoding_rna			None;(source:Araport11)
AT3G14980.6	protein_coding		IDM1 is a histone H3 acetyltransferase that is capable of recognizing methylated DNA through its MBD domain and recognizing unmethylated histone H3K4 through its PHD domain.   It negatively regulates DNA demethylation, preventing DNA hypermethylation of highly homologous multicopy genes and other repetitive sequences.	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT3G25530.3	protein_coding		Encodes gamma-hydroxybutyrate dehydrogenase (AtGHBDH).  Contains a NADP-binding domain.  GHBDH is proposed to function in oxidative stress tolerance.	glyoxylate reductase 1;(source:Araport11)
AT3G14980.4	protein_coding		IDM1 is a histone H3 acetyltransferase that is capable of recognizing methylated DNA through its MBD domain and recognizing unmethylated histone H3K4 through its PHD domain.   It negatively regulates DNA demethylation, preventing DNA hypermethylation of highly homologous multicopy genes and other repetitive sequences.	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT3G14980.5	protein_coding		IDM1 is a histone H3 acetyltransferase that is capable of recognizing methylated DNA through its MBD domain and recognizing unmethylated histone H3K4 through its PHD domain.   It negatively regulates DNA demethylation, preventing DNA hypermethylation of highly homologous multicopy genes and other repetitive sequences.	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT3G14980.2	protein_coding		IDM1 is a histone H3 acetyltransferase that is capable of recognizing methylated DNA through its MBD domain and recognizing unmethylated histone H3K4 through its PHD domain.   It negatively regulates DNA demethylation, preventing DNA hypermethylation of highly homologous multicopy genes and other repetitive sequences.	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT3G14980.3	protein_coding		IDM1 is a histone H3 acetyltransferase that is capable of recognizing methylated DNA through its MBD domain and recognizing unmethylated histone H3K4 through its PHD domain.   It negatively regulates DNA demethylation, preventing DNA hypermethylation of highly homologous multicopy genes and other repetitive sequences.	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT2G05965.1	long_noncoding_rna			None;(source:Araport11)
AT2G40630.2	protein_coding			Uncharacterized conserved protein (UCP030365);(source:Araport11)
AT3G59500.2	protein_coding			Integral membrane HRF1 family protein;(source:Araport11)
AT2G27840.4	protein_coding		Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39	histone deacetylase-related / HD-like protein;(source:Araport11)
AT1G04300.6	protein_coding		Encodes MUSE13, a TRAF domain protein. Regulates the turnover of nucleotide-binding domain and leucine-rich repeat-containing (NLR) immune receptors SNC1 and RPS2. Loss of both MUSE13 and MUSE14 leads to enhanced pathogen resistance, NLR accumulation, and autoimmunity.In addition, MUSE13/14 physically interact with ATG6 and appear to regulate ATG6 ubiquitination and thus formation of autophagosomes.	TRAF-like superfamily protein;(source:Araport11)
AT1G04300.5	protein_coding		Encodes MUSE13, a TRAF domain protein. Regulates the turnover of nucleotide-binding domain and leucine-rich repeat-containing (NLR) immune receptors SNC1 and RPS2. Loss of both MUSE13 and MUSE14 leads to enhanced pathogen resistance, NLR accumulation, and autoimmunity.In addition, MUSE13/14 physically interact with ATG6 and appear to regulate ATG6 ubiquitination and thus formation of autophagosomes.	TRAF-like superfamily protein;(source:Araport11)
AT1G04567.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G07220;(source:Araport11)
AT5G08005.1	protein_coding			flavonoid protein;(source:Araport11)
AT5G02445.1	antisense_rna			Natural antisense transcript overlaps with AT5G15790;(source:Araport11)
AT1G66465.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G42190.2	protein_coding			rho GTPase-activating gacO-like protein;(source:Araport11)
AT1G09307.1	long_noncoding_rna			None;(source:Araport11)
AT2G33350.5	protein_coding			CCT motif family protein;(source:Araport11)
AT2G04215.1	long_noncoding_rna			None;(source:Araport11)
AT4G11690.2	protein_coding		Encodes ABO8, a pentatricopeptide repeat (PPR) protein responsible for the splicing of NAD4 intron 3 in mitochondrial complex I. Abo8 mutants accumulate more reactive oxygen species (ROS) in root tips than the wild type.	Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G09555.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G28040.2	protein_coding		Member of the GeBP/GPL family of leucine zipper transcription factors. VPF4 interacts with the F-box proteins from A.tumefaciens VirF and VBF. Over expression results in decreased tumor formation upon Agrobacterium infection. Mutants show changes in the level of expression of defense response genes.	DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT2G43500.5	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT5G24275.2	protein_coding			En/Spm-like transposon;(source:Araport11)
AT1G07720.2	protein_coding		Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 3;(source:Araport11)
AT1G74240.2	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G02465.1	long_noncoding_rna			None;(source:Araport11)
AT3G18900.6	protein_coding			ternary complex factor MIP1 leucine-zipper protein;(source:Araport11)
AT5G24275.3	protein_coding			En/Spm-like transposon;(source:Araport11)
AT3G03515.1	long_noncoding_rna			None;(source:Araport11)
AT5G58410.2	protein_coding			HEAT/U-box domain-containing protein;(source:Araport11)
AT2G05235.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT5G54250.4	protein_coding		member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.	cyclic nucleotide-gated cation channel 4;(source:Araport11)
AT3G18900.4	protein_coding			ternary complex factor MIP1 leucine-zipper protein;(source:Araport11)
AT2G05400.3	protein_coding			Ubiquitin-specific protease family C19-related protein;(source:Araport11)
AT4G02390.3	protein_coding		Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .	poly(ADP-ribose) polymerase;(source:Araport11)
AT1G25250.2	protein_coding		Encodes a transcription factor that, together with IDD14 and IDD15, regulates auxin biosynthesis and transport and thus aerial organ morphogenesis and gravitropic responses . IDD16 also binds to the SPCH promoter and regulates stomata initiation.	indeterminate(ID)-domain 16;(source:Araport11)
AT1G25250.3	protein_coding		Encodes a transcription factor that, together with IDD14 and IDD15, regulates auxin biosynthesis and transport and thus aerial organ morphogenesis and gravitropic responses . IDD16 also binds to the SPCH promoter and regulates stomata initiation.	indeterminate(ID)-domain 16;(source:Araport11)
AT1G28265.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G02390.2	protein_coding		Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .	poly(ADP-ribose) polymerase;(source:Araport11)
AT1G08530.3	protein_coding			chitinase-like protein;(source:Araport11)
AT1G01380.3	protein_coding		ETC1 is involved in trichome and root hair patterning in Arabidopsis.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G55630.7	protein_coding		Encodes one of the three folylpolyglutamate synthetase isoforms (FPGSs): FPGS1 (At5g05980, plastidic), FPGS2 (At3g10160, mitochondrial) and FPGS3 (At3g55630, cytosolic).	DHFS-FPGS homolog D;(source:Araport11)
AT1G58180.5	protein_coding			beta carbonic anhydrase 6;(source:Araport11)
AT1G58180.6	protein_coding			beta carbonic anhydrase 6;(source:Araport11)
AT1G58180.7	protein_coding			beta carbonic anhydrase 6;(source:Araport11)
AT5G66450.3	protein_coding		Encodes a phosphatidic acid phosphatase that can be detected in chloroplast membrane fractions. This gene (LPPepsilon2) and LPPepsilon1, appear to be less important for diacylglycerol formation in the plastids than LPPgamma.	Phosphatidic acid phosphatase (PAP2) family protein;(source:Araport11)
AT5G05685.1	long_noncoding_rna			None;(source:Araport11)
AT4G04055.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G02040;(source:Araport11)
AT3G15290.2	protein_coding			3-hydroxyacyl-CoA dehydrogenase family protein;(source:Araport11)
AT1G33430.3	protein_coding		UPEX1 is arabinogalactan b-(1,3)-galactosyltransferase involved in the formation of pollen exine. Belongs to GT31 family. Mutants have reduced levels of AGPs.	Galactosyltransferase family protein;(source:Araport11)
AT5G66450.5	protein_coding		Encodes a phosphatidic acid phosphatase that can be detected in chloroplast membrane fractions. This gene (LPPepsilon2) and LPPepsilon1, appear to be less important for diacylglycerol formation in the plastids than LPPgamma.	Phosphatidic acid phosphatase (PAP2) family protein;(source:Araport11)
AT5G66450.4	protein_coding		Encodes a phosphatidic acid phosphatase that can be detected in chloroplast membrane fractions. This gene (LPPepsilon2) and LPPepsilon1, appear to be less important for diacylglycerol formation in the plastids than LPPgamma.	Phosphatidic acid phosphatase (PAP2) family protein;(source:Araport11)
AT1G07767.1	long_noncoding_rna			None;(source:Araport11)
AT3G30300.2	protein_coding			O-fucosyltransferase family protein;(source:Araport11)
AT5G38120.4	protein_coding			AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT2G29620.6	protein_coding			dentin sialophosphoprotein;(source:Araport11)
AT2G29620.4	protein_coding			dentin sialophosphoprotein;(source:Araport11)
AT2G29620.5	protein_coding			dentin sialophosphoprotein;(source:Araport11)
AT2G29620.2	protein_coding			dentin sialophosphoprotein;(source:Araport11)
AT2G29620.3	protein_coding			dentin sialophosphoprotein;(source:Araport11)
AT3G07200.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G09215.1	other_rna			None;(source:Araport11)
AT1G07783.1	long_noncoding_rna			None;(source:Araport11)
AT2G31865.3	protein_coding			poly(ADP-ribose) glycohydrolase 2;(source:Araport11)
AT2G04155.1	long_noncoding_rna			None;(source:Araport11)
AT3G47790.3	protein_coding			ABC2 homolog 7;(source:Araport11)
AT3G04443.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G14380.6	protein_coding		Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 28;(source:Araport11)
AT1G14380.7	protein_coding		Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 28;(source:Araport11)
AT1G14380.4	protein_coding		Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 28;(source:Araport11)
AT1G14380.5	protein_coding		Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 28;(source:Araport11)
AT5G62165.14	protein_coding		Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT5G62165.15	protein_coding		Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT5G57270.5	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G62165.17	protein_coding		Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT5G62165.10	protein_coding		Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT5G23520.2	protein_coding			smr (Small MutS Related) domain-containing protein;(source:Araport11)
AT5G62165.12	protein_coding		Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT1G29370.2	protein_coding			RNA polymerase II degradation factor-like protein (DUF1296);(source:Araport11)
AT1G34360.2	protein_coding			translation initiation factor 3 (IF-3) family protein;(source:Araport11)
AT1G34360.3	protein_coding			translation initiation factor 3 (IF-3) family protein;(source:Araport11)
AT2G02455.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G31560.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G14920.3	protein_coding			Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT3G47560.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G04505.1	long_noncoding_rna			None;(source:Araport11)
AT4G14920.2	protein_coding			Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT1G04483.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G06560;(source:Araport11)
AT1G17940.2	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT4G16857.2	protein_coding			disease resistance protein (TIR-NBS-LRR class) family protein;(source:Araport11)
AT4G16857.1	protein_coding			disease resistance protein (TIR-NBS-LRR class) family protein;(source:Araport11)
AT4G20440.5	protein_coding			small nuclear ribonucleoprotein associated protein B;(source:Araport11)
AT1G61980.2	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G61980.3	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT3G29760.4	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G26970.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G26488.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G26490;(source:Araport11)
AT3G61020.2	pseudogene			pseudogene of TRICHOME BIREFRINGENCE-LIKE 32;(source:Araport11)
AT1G53860.2	protein_coding		Encodes a protein that is highly methylated in a WT DML background.	Remorin family protein;(source:Araport11)
AT2G09995.1	miRNA_primary_transcript			microRNA ath-MIR5650 precursor;(source:Araport11)
AT5G08065.1	long_noncoding_rna			None;(source:Araport11)
AT2G21385.5	protein_coding		Encodes a chloroplast stroma localized protein that is found only in the green plant lineage. It is involved in assembly of the chloroplast ATP synthase complex.	hypothetical protein;(source:Araport11)
AT1G07777.1	long_noncoding_rna			None;(source:Araport11)
AT3G45260.2	protein_coding		BIB is a member of the BIRD family of zinc finger proteins that includes JKD. BIB functions redundantly with JKD to retain SHR in the nucleus and thereby restrict SHR movement in root tissues.	C2H2-like zinc finger protein;(source:Araport11)
AT3G02435.1	small_nucleolar_rna			None;(source:Araport11)
AT2G08665.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G34420;(source:Araport11)
AT3G48360.3	protein_coding		Encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development. BT2 also mediates multiple responses to nutrients, stresses, and hormones.	BTB and TAZ domain protein 2;(source:Araport11)
AT3G48360.2	protein_coding		Encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development. BT2 also mediates multiple responses to nutrients, stresses, and hormones.	BTB and TAZ domain protein 2;(source:Araport11)
AT2G22650.2	protein_coding			FAD-dependent oxidoreductase family protein;(source:Araport11)
AT4G04355.1	long_noncoding_rna			None;(source:Araport11)
AT3G53680.2	protein_coding			Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein;(source:Araport11)
AT5G08470.4	protein_coding		an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.	peroxisome 1;(source:Araport11)
AT5G03055.1	long_noncoding_rna			None;(source:Araport11)
AT5G08470.3	protein_coding		an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.	peroxisome 1;(source:Araport11)
AT3G27660.2	protein_coding		Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation.  Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.	oleosin 4;(source:Araport11)
AT2G09725.1	long_noncoding_rna			None;(source:Araport11)
AT5G05845.1	long_noncoding_rna			None;(source:Araport11)
AT4G00050.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G00050.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G07877.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G53400;(source:Araport11)
AT3G08060.1	novel_transcribed_region			novel transcribed region; detected in flower, pollen;(source:Araport11)
AT5G20680.4	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 16;(source:Araport11)
AT5G20680.5	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 16;(source:Araport11)
AT4G03025.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G41830.2	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT5G03210.2	protein_coding		Encodes a small polypeptide contributing to resistance to potyvirus.	E3 ubiquitin-protein ligase;(source:Araport11)
AT3G01065.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G01930;(source:Araport11)
AT1G07017.1	long_noncoding_rna			None;(source:Araport11)
AT5G37475.3	protein_coding			Translation initiation factor eIF3 subunit;(source:Araport11)
AT5G62980.2	protein_coding		Encodes an enzyme that can act as a aldolase or an epimerase for 7,8-dihydroneopterin and  7,8-dihydromonapterin in vitro. It is likely to act in folate biosynthesis as a homooctamer in vivo.	Dihydroneopterin aldolase;(source:Araport11)
AT4G31073.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G56750.2	protein_coding			N-MYC downregulated-like 1;(source:Araport11)
AT4G03005.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03005.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03005.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G21530.2	protein_coding			DNAse I-like superfamily protein;(source:Araport11)
AT4G03005.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G46990.2	protein_coding		Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.	indole-3-acetic acid inducible 20;(source:Araport11)
AT5G00885.1	other_rna			None;(source:Araport11)
AT5G08430.2	protein_coding			SWIB/MDM2 and Plus-3 and GYF domain-containing protein;(source:Araport11)
AT3G18535.2	protein_coding			tubulin-tyrosine ligase;(source:Araport11)
AT3G18535.3	protein_coding			tubulin-tyrosine ligase;(source:Araport11)
AT1G68550.uORF1-2	uORF			Derives_from AT1G68550;(source:Araport11)
AT3G43700.3	protein_coding		Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 6;(source:Araport11)
AT5G15710.2	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G30740.12	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G30740.11	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G30740.10	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G05793.1	long_noncoding_rna			None;(source:Araport11)
AT5G56740.2	protein_coding		Encodes an enzyme with histone acetyltransferase activity. Histone H4 is the primary substrate for the enzyme. Prior acetylation of  lysine 12 of histone H4 reduces radioactive acetylation by  HAG2. HAG2 acetylates histone H4 lysine 12.	histone acetyltransferase of the GNAT family 2;(source:Araport11)
AT1G03060.2	protein_coding		Encodes a WD/BEACH domain protein involved in cell morphogenesis and ribonucleoprotein particle formation.  It interacts with the P-body core component DCP2, associates to mRNA processing bodies (P-bodies), and regulates their assembly upon salt stress.	BEACH-DOMAIN HOMOLOG A1;(source:Araport11)
AT1G03250.4	protein_coding			R3H domain protein;(source:Araport11)
AT1G16260.3	protein_coding			Wall-associated kinase family protein;(source:Araport11)
AT2G33860.uORF1	uORF			Derives_from AT2G33860;(source:Araport11)
AT1G07003.1	long_noncoding_rna			None;(source:Araport11)
AT1G03250.3	protein_coding			R3H domain protein;(source:Araport11)
AT1G53025.2	protein_coding			Ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT1G64625.4	protein_coding		Encodes a plant-specific basic helix-loop-helix (bHLH) protein that is required for normal meiotic entry and the establishment of meiotic synchrony.  It plays a role in xylem differentiation downstream of auxin.	Serine/threonine-protein kinase WNK (With No Lysine)-like protein;(source:Araport11)
AT2G00610.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00610.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G46730.3	pseudogene			pseudogene of galacturonosyltransferase-like protein;(source:Araport11)
AT2G46730.2	pseudogene			pseudogene of galacturonosyltransferase-like protein;(source:Araport11)
AT1G06553.1	small_nucleolar_rna			None;(source:Araport11)
AT4G22758.2	protein_coding			PPR containing protein;(source:Araport11)
AT1G05253.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G16720;(source:Araport11)
AT2G46730.5	pseudogene			pseudogene of galacturonosyltransferase-like protein;(source:Araport11)
AT2G46730.4	pseudogene			pseudogene of galacturonosyltransferase-like protein;(source:Araport11)
AT3G49600.2	protein_coding		Encodes a ubiquitin-specific protease which catalyzes deubiquitination of   histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1.	ubiquitin-specific protease 26;(source:Araport11)
AT5G14610.5	protein_coding			DEAD box RNA helicase family protein;(source:Araport11)
AT5G14610.6	protein_coding			DEAD box RNA helicase family protein;(source:Araport11)
AT5G14610.7	protein_coding			DEAD box RNA helicase family protein;(source:Araport11)
AT1G07813.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G52530;(source:Araport11)
AT5G01655.1	long_noncoding_rna			None;(source:Araport11)
AT5G14610.3	protein_coding			DEAD box RNA helicase family protein;(source:Araport11)
AT5G09275.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G64816;(source:Araport11)
AT3G08205.1	long_noncoding_rna			None;(source:Araport11)
AT2G01760.2	protein_coding		member of Response Regulator: B- Type	response regulator 14;(source:Araport11)
AT5G07740.2	protein_coding			actin binding protein;(source:Araport11)
AT5G07740.3	protein_coding			actin binding protein;(source:Araport11)
AT2G18890.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G21610.5	protein_coding			wound-responsive family protein;(source:Araport11)
AT5G56020.2	protein_coding			Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT3G08870.2	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT2G07265.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G20230;(source:Araport11)
AT1G12900.5	protein_coding			glyceraldehyde 3-phosphate dehydrogenase A subunit 2;(source:Araport11)
AT2G09525.1	long_noncoding_rna			None;(source:Araport11)
AT4G24460.3	protein_coding		Encodes one of the CRT-Like transporters (CLT1/AT5G19380, CLT2/AT4G24460, CLT3/AT5G12170). Required for glutathione homeostasis and stress responses.  Mutants lacking these transporters are heavy metal-sensitive, glutathione(GSH)-deficient, and hypersensitive to Phytophthora infection.	CRT (chloroquine-resistance transporter)-like transporter 2;(source:Araport11)
AT3G59580.3	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT5G43080.2	protein_coding			Cyclin A3;(source:Araport11)
AT1G56130.3	protein_coding			Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G09173.1	long_noncoding_rna			None;(source:Araport11)
AT1G06417.1	long_noncoding_rna			None;(source:Araport11)
AT1G30540.4	protein_coding			Actin-like ATPase superfamily protein;(source:Araport11)
AT1G30540.2	protein_coding			Actin-like ATPase superfamily protein;(source:Araport11)
AT1G30540.3	protein_coding			Actin-like ATPase superfamily protein;(source:Araport11)
AT3G05685.3	protein_coding			Cystatin/monellin superfamily protein;(source:Araport11)
AT3G23480.3	protein_coding			Cyclopropane-fatty-acyl-phospholipid synthase;(source:Araport11)
AT2G31740.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G08645.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G56310;(source:Araport11)
AT5G02125.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G13940;(source:Araport11)
AT4G38960.6	protein_coding		BBX19 is a B-box containing transcriptional regulator involved in photomporphogenesis and flowering.	B-box type zinc finger family protein;(source:Araport11)
AT3G14660.3	protein_coding		putative cytochrome P450The mRNA is cell-to-cell mobile.	cytochrome P450, family 72, subfamily A, polypeptide 13;(source:Araport11)
AT1G71230.2	protein_coding		Encodes a subunit of the COP9 complex, similar to  JAB1, a specific mammalian coactivator of AP-1 transcription. Involved in protein deneddylation. Double mutants with CSN5A are constitutively photomorphogenic (de-etiolated) and have abnormal auxin responses.	COP9-signalosome 5B;(source:Araport11)
AT5G05115.2	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, light-grown seedling, flower, pollen, aerial;(source:Araport11)
AT1G09265.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00830.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT3G27150.2	protein_coding		Target gene of MIR2111-5p.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G05243.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G16560;(source:Araport11)
AT5G38720.2	protein_coding		RRP7 shares limited sequence similarity to human and yeast RRP7. In Arabidopsis RRP7 functions in 18S ribosomal RNA maturation.	ribosomal RNA-processing 7 protein;(source:Araport11)
AT5G38720.3	protein_coding		RRP7 shares limited sequence similarity to human and yeast RRP7. In Arabidopsis RRP7 functions in 18S ribosomal RNA maturation.	ribosomal RNA-processing 7 protein;(source:Araport11)
AT5G10310.2	protein_coding			EPIDERMAL PATTERNING FACTOR-like protein;(source:Araport11)
AT3G59435.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G26450.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G01915.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G06960;(source:Araport11)
AT5G03725.1	novel_transcribed_region			novel transcribed region; detected in carpel, leaf, dark-grown seedling, light-grown seedling, flower, pollen;(source:Araport11)
AT5G01515.1	small_nucleolar_rna			None;(source:Araport11)
AT3G02290.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G02290.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G05812.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G05810;(source:Araport11)
AT3G02290.6	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G09205.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09205.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G35670.2	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT3G27460.3	protein_coding			SGF29 tudor-like domain-containing protein;(source:Araport11)
AT3G22260.4	protein_coding			Cysteine proteinases superfamily protein;(source:Araport11)
AT3G22260.5	protein_coding			Cysteine proteinases superfamily protein;(source:Araport11)
AT5G02675.1	small_nucleolar_rna			None;(source:Araport11)
AT4G19960.3	protein_coding		Encodes a potassium ion transmembrane transporter. Also mediates cesium uptake when expressed in E. coli.The mRNA is cell-to-cell mobile.	K+ uptake permease 9;(source:Araport11)
AT4G19960.4	protein_coding		Encodes a potassium ion transmembrane transporter. Also mediates cesium uptake when expressed in E. coli.The mRNA is cell-to-cell mobile.	K+ uptake permease 9;(source:Araport11)
AT3G00180.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G47790.2	protein_coding			ABC2 homolog 7;(source:Araport11)
AT4G06370.1	long_noncoding_rna			None;(source:Araport11)
AT3G03260.2	protein_coding		Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	homeodomain GLABROUS 8;(source:Araport11)
AT4G14390.3	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT5G05260.2	protein_coding		Encodes cytochrome P450 CYP79A2.	phenylalanine N-monooxygenase-like protein;(source:Araport11)
AT1G24545.1	protein_coding			copine family protein;(source:Araport11)
AT3G60100.3	protein_coding			citrate synthase 5;(source:Araport11)
AT3G60100.2	protein_coding			citrate synthase 5;(source:Araport11)
AT4G05465.1	long_noncoding_rna			None;(source:Araport11)
AT2G08790.1	long_noncoding_rna			None;(source:Araport11)
AT2G07625.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G19900.2	protein_coding			PRLI-interacting factor;(source:Araport11)
AT5G04335.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G27020;(source:Araport11)
AT1G76040.4	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 29;(source:Araport11)
AT1G30970.3	protein_coding		Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis.  suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants.  suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor.  SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus.	zinc finger (C2H2 type) family protein;(source:Araport11)
AT1G51380.4	protein_coding			DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT5G66150.3	protein_coding			Glycosyl hydrolase family 38 protein;(source:Araport11)
AT3G00530.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G51380.3	protein_coding			DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT1G08213.1	long_noncoding_rna			None;(source:Araport11)
AT5G43990.7	protein_coding		Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT5G43990.6	protein_coding		Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT1G58470.2	protein_coding		Encodes an mRNA-binding protein that contains two RNA recognition motifs (RRMs) and is expressed in proliferating tissues. Preferentially binds UUAGG, GUAGG and/or UUAGU. Loss of function of RBP1 causes decreased root length.	RNA-binding protein 1;(source:Araport11)
AT2G09285.1	long_noncoding_rna			None;(source:Araport11)
AT3G16750.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G61760.2	protein_coding			DYNAMIN-like 1B;(source:Araport11)
AT2G01900.2	protein_coding		Encodes an inositol polyphosphate phosphatidylinositol 5-phosphatase that is expressed in roots and is involved in mediating salt tolerance through endocytosis.	DNAse I-like superfamily protein;(source:Araport11)
AT2G16900.5	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G16900.4	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G16900.7	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT5G00680.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G09105.1	long_noncoding_rna			None;(source:Araport11)
AT3G32400.2	protein_coding			Actin-binding FH2/DRF autoregulatory protein;(source:Araport11)
AT1G66960.3	protein_coding			Terpenoid cyclases family protein;(source:Araport11)
AT3G33530.5	protein_coding			Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G41445.3	protein_coding			agamous-like MADS-box protein;(source:Araport11)
AT2G41445.2	protein_coding			agamous-like MADS-box protein;(source:Araport11)
AT1G10450.2	protein_coding		Encodes SIN3-like 6, a homolog of the transcriptional repressor SIN3 (AT1G24190).	paired amphipathic helix Sin3-like protein;(source:Araport11)
AT1G10450.3	protein_coding		Encodes SIN3-like 6, a homolog of the transcriptional repressor SIN3 (AT1G24190).	paired amphipathic helix Sin3-like protein;(source:Araport11)
AT2G00830.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G31520.2	protein_coding			SDA1 family protein;(source:Araport11)
AT3G00240.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G01995.1	long_noncoding_rna			None;(source:Araport11)
AT1G10390.3	protein_coding		DRA2 is a homolog of mammalian nucleoporin 98 and a likely component of the nuclear pore complex in Arabidopsis. It positively participates in the control of the hypocotyl elongation response to plant proximity and control of shade induced gene expression. Nucleoportin which redundantly inhibits flowering together with Nup98b through multiple pathways including clock, photoperiod, and age pathways. Gates flowering in a CONSTANS (CO)-independent mode and bypasses the CO checkpoint in photoperiodic signaling and integrated signals from multiple pathways to directly target FLOWERING LOCUS T (FT) for flowering control.	Nucleoporin autopeptidase;(source:Araport11)
AT1G64355.3	protein_coding			1-acyl-sn-glycerol-3-phosphate acyltransferase;(source:Araport11)
AT3G01565.1	long_noncoding_rna			None;(source:Araport11)
AT3G52105.2	protein_coding			DIS3-exonuclease-like protein;(source:Araport11)
AT3G23450.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G04215.1	long_noncoding_rna			None;(source:Araport11)
AT5G08490.6	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G06815.1	long_noncoding_rna			None;(source:Araport11)
AT5G08490.4	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G06443.1	long_noncoding_rna			None;(source:Araport11)
AT4G03365.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03365.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G23870.4	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT3G23870.5	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT3G08160.1	long_noncoding_rna			None;(source:Araport11)
AT1G50950.2	protein_coding			protein disulfide-isomerase 5-like protein (DUF1692);(source:Araport11)
AT3G23870.2	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT3G23870.3	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT5G00435.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G08933.1	other_rna			None;(source:Araport11)
AT5G13240.2	protein_coding		Global repressor of RNA polymerase III (Pol III). Maf1 repressor activity is critical for plant survival during environmental stresses, and is regulated by its phosphorylation/dephosphorylation through the activity of TOR and PP4/PP2A phosphatases.	transcription regulator;(source:Araport11)
AT1G17780.5	protein_coding		ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	transmembrane protein;(source:Araport11)
AT5G47240.2	protein_coding			nudix hydrolase homolog 8;(source:Araport11)
AT3G08140.1	long_noncoding_rna			None;(source:Araport11)
AT3G45430.3	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G27690.2	protein_coding		Encodes Lhcb2.4.  Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.The mRNA is cell-to-cell mobile.	photosystem II light harvesting complex protein 2.3;(source:Araport11)
AT5G08480.3	protein_coding			VQ motif-containing protein;(source:Araport11)
AT2G46060.3	protein_coding			transmembrane protein-like protein;(source:Araport11)
AT4G33130.4	protein_coding			rho GTPase-activating protein;(source:Araport11)
AT1G01355.2	protein_coding			Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT1G01355.3	protein_coding			Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT1G02205.4	protein_coding		Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined.	Fatty acid hydroxylase superfamily;(source:Araport11)
AT2G06745.1	long_noncoding_rna			None;(source:Araport11)
AT5G60600.5	protein_coding		Encodes a chloroplast-localized  hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP).  The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP<sup>+</sup> reductase.The mRNA is cell-to-cell mobile.	4-hydroxy-3-methylbut-2-enyl diphosphate synthase;(source:Araport11)
AT4G13800.5	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT1G30282.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G30280;(source:Araport11)
AT2G20590.3	protein_coding			Reticulon family protein;(source:Araport11)
AT2G04765.1	long_noncoding_rna			None;(source:Araport11)
AT4G24260.2	protein_coding		Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by  Heterodera schachtii.May be involved in the development and function of syncitia.	glycosyl hydrolase 9A3;(source:Araport11)
AT1G47590.3	pseudogene		Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.Previously annotated as pseudogene, evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of purine permease 19;(source:Araport11)
AT1G47590.2	pseudogene		Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.Previously annotated as pseudogene, evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of purine permease 19;(source:Araport11)
AT4G18490.5	protein_coding			hypothetical protein;(source:Araport11)
AT4G18490.4	protein_coding			hypothetical protein;(source:Araport11)
AT4G18490.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G49160.2	protein_coding		Encodes a cytosine methyltransferase MET1.  Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation.The mRNA is cell-to-cell mobile.	methyltransferase 1;(source:Araport11)
AT2G19560.2	protein_coding		encodes a protein with a PAM domain involved in ethylene signaling. eer5 mutants show ethylene hypersensitivity in relation to hypocotyl elongation. EER5 interacts with EIN2 and with COP9 in Y2H assays. EIN3 protein levels are the same in WT and eer5-1 mutants. EER5 may be involved in promoting a dampening of the ethylene response.	proteasome family protein;(source:Araport11)
AT4G13800.6	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT4G19185.2	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G06710.14	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G02260.4	protein_coding		Calossin-like protein required for polar auxin transport	auxin transport protein (BIG);(source:Araport11)
AT1G21400.2	protein_coding			Thiamin diphosphate-binding fold (THDP-binding) superfamily protein;(source:Araport11)
AT3G04455.1	long_noncoding_rna			None;(source:Araport11)
AT3G54930.3	protein_coding			Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT3G02260.2	protein_coding		Calossin-like protein required for polar auxin transport	auxin transport protein (BIG);(source:Araport11)
AT3G02260.3	protein_coding		Calossin-like protein required for polar auxin transport	auxin transport protein (BIG);(source:Araport11)
AT3G46940.2	protein_coding			DUTP-PYROPHOSPHATASE-LIKE 1;(source:Araport11)
AT5G00720.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G02485.1	long_noncoding_rna			None;(source:Araport11)
AT4G09165.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G35540;(source:Araport11)
AT4G23210.5	protein_coding		Encodes a Cysteine-rich receptor-like kinase (CRK13).  Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.	cysteine-rich RLK (RECEPTOR-like protein kinase) 13;(source:Araport11)
AT4G04645.1	long_noncoding_rna			None;(source:Araport11)
AT2G35630.2	protein_coding		Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity.The mRNA is cell-to-cell mobile.	ARM repeat superfamily protein;(source:Araport11)
AT2G37620.3	protein_coding		Member of the actin gene family. Expressed in mature pollen.	actin 1;(source:Araport11)
AT2G20950.8	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G37620.4	protein_coding		Member of the actin gene family. Expressed in mature pollen.	actin 1;(source:Araport11)
AT1G06470.3	protein_coding			Nucleotide/sugar transporter family protein;(source:Araport11)
AT2G20950.7	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G12020.11	protein_coding		Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301.	protein kinase family protein;(source:Araport11)
AT1G06470.4	protein_coding			Nucleotide/sugar transporter family protein;(source:Araport11)
AT3G03815.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G19290;(source:Araport11)
AT1G34120.4	protein_coding		Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.	inositol polyphosphate 5-phosphatase I;(source:Araport11)
AT1G34120.5	protein_coding		Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.	inositol polyphosphate 5-phosphatase I;(source:Araport11)
AT4G24920.2	protein_coding			secE/sec61-gamma protein transport protein;(source:Araport11)
AT5G00565.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G37240.5	protein_coding			hypothetical protein;(source:Araport11)
AT2G30695.3	protein_coding			bacterial trigger factor;(source:Araport11)
AT2G30695.4	protein_coding			bacterial trigger factor;(source:Araport11)
AT5G14895.1	protein_coding			NHL domain protein;(source:Araport11)
AT5G37240.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G37240.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G47210.2	protein_coding			myb-like transcription factor family protein;(source:Araport11)
AT4G08470.2	protein_coding		Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002, 7(7):301.	MAPK/ERK kinase kinase 3;(source:Araport11)
AT1G06490.2	protein_coding		Encodes Callose Synthase 7 (CalS7), a phloem-specific callose synthase responsible for callose deposition in developing sieve elements during phloem formation and in mature phloem induced by wounding.	glucan synthase-like 7;(source:Araport11)
AT2G05620.2	protein_coding		Involved in electron flow in Photosystem I. Essential for photoprotection.	proton gradient regulation 5;(source:Araport11)
AT1G60460.5	protein_coding		Encodes a structural homolog of the archaeal topo VIB subunit that forms a complex with the two Arabidopsis thaliana SPO11 orthologs required for meiotic DSB formation (SPO11-1 and SPO11-2) and is essential for meiotic DSB formation.	hypothetical protein;(source:Araport11)
AT1G03160.3	protein_coding		A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.	FZO-like protein;(source:Araport11)
AT5G06250.5	protein_coding		Transcription repressor involved in regulation of inflorescence architecture.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT1G08785.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G59490.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G56300.2	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G08275.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G55450;(source:Araport11)
AT1G21920.2	protein_coding		MRF1 is related to SET7/9 proteins but contains an atypical SET domain. It is expressed in phloem and mutants have a weak late flowering phenotype.	Histone H3 K4-specific methyltransferase SET7/9 family protein;(source:Araport11)
AT1G70440.2	protein_coding		Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.	similar to RCD one 3;(source:Araport11)
AT1G50140.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G58780.5	protein_coding		One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT3G24360.4	protein_coding			ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT2G29270.2	pseudogene			pseudogene of senescence-associated gene 13;(source:Araport11)
AT2G05365.1	long_noncoding_rna			None;(source:Araport11)
AT1G10010.2	protein_coding		Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases.  Most closely related to AAP1 (75%) identity.	amino acid permease 8;(source:Araport11)
AT1G50700.2	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 33;(source:Araport11)
AT2G00440.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G27620.2	protein_coding		core cell cycle genesThe mRNA is cell-to-cell mobile.	cyclin H;(source:Araport11)
AT5G13220.5	protein_coding		Encodes JAZ10, a member of the JASMONATE ZIM-domain (JAZ) proteins acting as repressors of jasmonate (JA) signaling. An alternatively spliced form (JAZ10.4) of JAZ10 lacks the Jas domain.	jasmonate-zim-domain protein 10;(source:Araport11)
AT2G18060.2	protein_coding		Encodes a NAC-domain transcription factor that is expressed in developing vessels and protoxylem. Along with other members of this family, VND1 appears to regulate the development of genes required for secondary cell wall biosynthesis.	vascular related NAC-domain protein 1;(source:Araport11)
AT2G18060.3	protein_coding		Encodes a NAC-domain transcription factor that is expressed in developing vessels and protoxylem. Along with other members of this family, VND1 appears to regulate the development of genes required for secondary cell wall biosynthesis.	vascular related NAC-domain protein 1;(source:Araport11)
AT5G07515.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G49920;(source:Araport11)
AT1G50140.5	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G12460.8	protein_coding			OSBP(oxysterol binding protein)-related protein 2B;(source:Araport11)
AT4G12460.9	protein_coding			OSBP(oxysterol binding protein)-related protein 2B;(source:Araport11)
AT4G29180.3	protein_coding			root hair specific 16;(source:Araport11)
AT2G47410.6	protein_coding			WD40 domain-containing protein;(source:Araport11)
AT2G00420.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G05030.2	protein_coding			Copper transport protein family;(source:Araport11)
AT2G21880.4	protein_coding			RAB GTPase homolog 7A;(source:Araport11)
AT2G39770.3	protein_coding		Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for ascorbate (vitamin C) biosynthesis.  Mutations in this gene confer hypersensitivity to NH4+.	Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT4G12460.3	protein_coding			OSBP(oxysterol binding protein)-related protein 2B;(source:Araport11)
AT4G12460.4	protein_coding			OSBP(oxysterol binding protein)-related protein 2B;(source:Araport11)
AT4G12460.5	protein_coding			OSBP(oxysterol binding protein)-related protein 2B;(source:Araport11)
AT4G12460.6	protein_coding			OSBP(oxysterol binding protein)-related protein 2B;(source:Araport11)
AT4G12460.7	protein_coding			OSBP(oxysterol binding protein)-related protein 2B;(source:Araport11)
AT5G08225.1	long_noncoding_rna			None;(source:Araport11)
AT3G60160.2	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 9;(source:Araport11)
AT1G05700.2	protein_coding			Leucine-rich repeat transmembrane protein kinase protein;(source:Araport11)
AT4G07160.1	long_noncoding_rna			None;(source:Araport11)
AT1G27380.3	protein_coding		encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.	ROP-interactive CRIB motif-containing protein 2;(source:Araport11)
AT3G16565.4	protein_coding			threonyl and alanyl tRNA synthetase second additional domain-containing protein;(source:Araport11)
AT3G58780.4	protein_coding		One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G08267.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G59840;(source:Araport11)
AT4G36032.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G36030;(source:Araport11)
AT4G03785.1	long_noncoding_rna			None;(source:Araport11)
AT5G07905.1	long_noncoding_rna			None;(source:Araport11)
AT1G20700.3	protein_coding		Encodes WOX14, a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain.  Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Functions in the shoot meristem organizing center to maintain the stem cells in an undifferentiated state. WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation.	WUSCHEL related homeobox 14;(source:Araport11)
AT3G06185.1	long_noncoding_rna			None;(source:Araport11)
AT5G01260.3	protein_coding			Carbohydrate-binding-like fold;(source:Araport11)
AT5G22830.2	protein_coding		Transmembrane magnesium transporter that is essential for chloroplast development and photosynthesis. One of nine family members.	magnesium (Mg) transporter 10;(source:Araport11)
AT5G61330.3	protein_coding			rRNA processing protein-like protein;(source:Araport11)
AT5G61330.2	protein_coding			rRNA processing protein-like protein;(source:Araport11)
AT3G62510.2	protein_coding			disulfide isomerase-like protein;(source:Araport11)
AT1G67500.6	protein_coding		Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).	recovery protein 3;(source:Araport11)
AT1G67500.7	protein_coding		Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).	recovery protein 3;(source:Araport11)
AT1G67500.4	protein_coding		Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).	recovery protein 3;(source:Araport11)
AT1G67500.5	protein_coding		Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).	recovery protein 3;(source:Araport11)
AT1G67500.3	protein_coding		Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).	recovery protein 3;(source:Araport11)
AT3G00350.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G52870.2	protein_coding		Encodes a member of the MAKR (MEMBRANE-ASSOCIATED KINASE REGULATOR)  gene family. MAKRs have putative kinase interacting motifs and membrane localization signals. Known members include: AT5G26230 (MAKR1), AT1G64080 (MAKR2), AT2G37380 (MAKR3), AT2G39370 (MAKR4), AT5G52870 (MAKR5) and AT5G52900 (MAKR6).	membrane-associated kinase regulator;(source:Araport11)
AT5G11640.2	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT1G53490.2	protein_coding		Encodes HEI10, a RING finger-containing protein. HEI10 belongs to a group of proteins well conserved among species known as ZMM. Required for class I crossover formation.The mRNA is cell-to-cell mobile.	RING/U-box superfamily protein;(source:Araport11)
AT1G16250.2	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G50375.3	protein_coding		Converts pentacyclic cyclopropyl sterols to conventional tetracyclic sterols. CPI1 function during and just after division and  support gravitropism by establishing polar PIN2 localization. Required for endocytosis of PIN2	cyclopropyl isomerase;(source:Araport11)
AT2G05385.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, dark-grown seedling, light-grown seedling, aerial;(source:Araport11)
AT1G04280.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G70780.uORF1	uORF			Derives_from AT1G70780;(source:Araport11)
AT1G29380.4	protein_coding			Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT5G20090.4	protein_coding		MPC1 negatively regulates ABA enhanced slow anion channel function during stomatal closure.	Uncharacterized protein family (UPF0041);(source:Araport11)
AT1G29380.2	protein_coding			Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G29380.3	protein_coding			Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G32610.3	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT4G08215.1	long_noncoding_rna			None;(source:Araport11)
AT5G02405.1	long_noncoding_rna			None;(source:Araport11)
AT2G04195.1	long_noncoding_rna			None;(source:Araport11)
AT1G73110.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G02425.1	long_noncoding_rna			None;(source:Araport11)
AT5G23320.2	protein_coding		Encodes a prenylcysteine alpha-carboxyl methyltransferase involved in methylation of isoprenylated proteins. This protein appears to have lower catalytic activity and a lower transcript expression level than the other ICMT present in Arabidopsis (At5g08335). Analysis of ICMT RNAi lines suggests that this protein may be involved in flower and stem development.	S-isoprenylcysteine O-methyltransferase;(source:Araport11)
AT1G49225.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G66600.10	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G66600.11	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G66600.12	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G66600.13	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G66600.14	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G66600.15	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G55893.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G55893.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G27410.3	protein_coding		D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT3G05190.1). Note that the At5g27410.2 gene model (TAIR10) has been obsoleted due to the lack of experimental support.	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT5G27410.4	protein_coding		D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT3G05190.1). Note that the At5g27410.2 gene model (TAIR10) has been obsoleted due to the lack of experimental support.	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT3G07775.1	long_noncoding_rna			None;(source:Araport11)
AT3G04655.1	miRNA_primary_transcript			microRNA ath-MIR8169 precursor;(source:Araport11)
AT3G05235.1	long_noncoding_rna			None;(source:Araport11)
AT1G61240.8	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT3G16570.3	protein_coding		Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  RALF23 is significantly downregulated by brassinolide treatment of seedlings.   Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere.	rapid alkalinization factor 23;(source:Araport11)
AT1G06433.1	long_noncoding_rna			None;(source:Araport11)
AT5G09705.1	long_noncoding_rna			None;(source:Araport11)
AT4G06280.1	long_noncoding_rna			None;(source:Araport11)
AT5G03565.1	long_noncoding_rna			None;(source:Araport11)
AT2G08100.1	long_noncoding_rna			None;(source:Araport11)
AT1G61240.7	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT1G61240.6	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT1G61240.5	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT1G05193.1	long_noncoding_rna			None;(source:Araport11)
AT1G05967.1	long_noncoding_rna			None;(source:Araport11)
AT5G27990.2	protein_coding			Pre-rRNA-processing protein TSR2, conserved region;(source:Araport11)
AT1G33390.2	protein_coding		Over-expression of this gene results in stem fasciation.  The predicted amino acid sequence reveals the presence of two   domains (DEXH-box or DEAD-box helicase and DUF1065 domain) and fragments of two more domains (HrpA domain and HA2 domain).	RNA helicase family protein;(source:Araport11)
AT3G08725.1	long_noncoding_rna			None;(source:Araport11)
AT2G41710.4	protein_coding			Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G27313.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G37970.2	protein_coding			cinnamyl alcohol dehydrogenase 6;(source:Araport11)
AT5G51930.2	protein_coding			Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT3G17430.2	protein_coding		Nucleotide/sugar transporter family proteinThe mRNA is cell-to-cell mobile.	Nucleotide-sugar transporter family protein;(source:Araport11)
AT1G07727.1	miRNA_primary_transcript			microRNA ath-MIR5653 precursor;(source:Araport11)
AT5G03115.1	long_noncoding_rna			None;(source:Araport11)
AT4G03915.1	small_nucleolar_rna			None;(source:Araport11)
AT1G61660.7	protein_coding		Encodes a transcriptional activator that regulates the expression of genes by binding to their GCG- or E-boxes to mediate physiological responses, including proline biosynthesis and ROS scavenging pathways, to enhance stress tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G47490.6	protein_coding			HNH endonuclease;(source:Araport11)
AT2G07205.1	miRNA_primary_transcript			microRNA ath-MIR5012 precursor;(source:Araport11)
AT1G48180.2	protein_coding			target of trans acting-siR480/255 protein;(source:Araport11)
AT4G34050.3	protein_coding		Methyltransferase in the lignin biosynthetic pathway.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G18370.2	protein_coding		Encodes DEG5.  Forms a hexamer with DEG8 in the thylakoid lumen.  Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII).	DEGP protease 5;(source:Araport11)
AT4G18370.3	protein_coding		Encodes DEG5.  Forms a hexamer with DEG8 in the thylakoid lumen.  Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII).	DEGP protease 5;(source:Araport11)
AT4G19520.2	protein_coding			disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G37940.3	protein_coding		encodes a MADS box protein, highly expressed in the root.	AGAMOUS-like 21;(source:Araport11)
AT2G08275.1	miRNA_primary_transcript			microRNA ath-MIR5637 precursor;(source:Araport11)
AT1G27180.8	protein_coding			disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G06023.1	long_noncoding_rna			None;(source:Araport11)
AT3G07860.2	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT3G52750.4	protein_coding		Nuclear gene that encodes a plastidial division protein (FtsZ2-2).   FtsZ2-2 is involved in chloroplast morphology and internal organisation in addition to participating in chloroplast partition	Tubulin/FtsZ family protein;(source:Araport11)
AT2G09225.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G41110;(source:Araport11)
AT1G09505.1	novel_transcribed_region		Member of conserved family of peptides involved in Fe uptake and homeostasis.	novel transcribed region;(source:Araport11)
AT1G29460.2	protein_coding			SAUR-like auxin-responsive protein family;(source:Araport11)
AT4G04975.1	long_noncoding_rna			None;(source:Araport11)
AT5G04545.1	small_nucleolar_rna			None;(source:Araport11)
AT3G04795.1	long_noncoding_rna			None;(source:Araport11)
AT3G19080.2	protein_coding			SWIB complex BAF60b domain-containing protein;(source:Araport11)
AT2G33280.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G33280.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT4G10550.4	protein_coding			Subtilase family protein;(source:Araport11)
AT1G59460.1	protein_coding			B-block-binding subunit of TFIIIC protein;(source:Araport11)
AT1G06883.1	long_noncoding_rna			None;(source:Araport11)
AT1G31243.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G51740.2	protein_coding		Mitochondrial ATP-independent protease .Important for maintenance of proper function of the oxphos system.	Peptidase family M48 family protein;(source:Araport11)
AT5G05800.4	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT1G77370.2	protein_coding			Glutaredoxin family protein;(source:Araport11)
AT1G78810.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G33290.4	protein_coding		Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. Gene is expressed in rosettes, stems, floral buds, and flowers by RT-PCR.	SU(VAR)3-9 homolog 2;(source:Araport11)
AT1G57680.3	protein_coding			plasminogen activator inhibitor;(source:Araport11)
AT2G33290.2	protein_coding		Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. Gene is expressed in rosettes, stems, floral buds, and flowers by RT-PCR.	SU(VAR)3-9 homolog 2;(source:Araport11)
AT2G33290.3	protein_coding		Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. Gene is expressed in rosettes, stems, floral buds, and flowers by RT-PCR.	SU(VAR)3-9 homolog 2;(source:Araport11)
AT1G50745.1	protein_coding			plant mobile domain protein;(source:Araport11)
AT3G09745.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G62090;(source:Araport11)
AT1G47340.3	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G09410.4	protein_coding		calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum)	ethylene induced calmodulin binding protein;(source:Araport11)
AT3G62860.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G08215.1	long_noncoding_rna			None;(source:Araport11)
AT1G80690.2	protein_coding			PPPDE putative thiol peptidase family protein;(source:Araport11)
AT2G06105.1	protein_coding			aspartyl protease gag-polyprotein;(source:Araport11)
AT2G38460.2	protein_coding		Encodes IRON REGULATED1 (IREG1/FPN1), one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.	iron regulated 1;(source:Araport11)
AT4G12020.6	protein_coding		Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301.	protein kinase family protein;(source:Araport11)
AT1G15420.2	protein_coding			WD repeat protein;(source:Araport11)
AT2G39300.3	protein_coding			CAP-gly domain linker;(source:Araport11)
AT1G05663.1	long_noncoding_rna			None;(source:Araport11)
AT5G56320.2	protein_coding		member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A14;(source:Araport11)
AT4G19990.3	protein_coding			FAR1-related sequence 1;(source:Araport11)
AT1G09065.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G46450.3	protein_coding			SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein;(source:Araport11)
AT4G12020.8	protein_coding		Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301.	protein kinase family protein;(source:Araport11)
AT4G14368.3	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT4G14368.2	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT4G03065.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03065.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G19990.5	protein_coding			FAR1-related sequence 1;(source:Araport11)
AT1G62350.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G05345.1	novel_transcribed_region			novel transcribed region; detected in carpel, root apical meristem, receptacle, dark-grown seedling, flower, aerial;(source:Araport11)
AT4G12790.uORF1	uORF			Derives_from AT4G12790;(source:Araport11)
AT3G08410.1	other_rna			None;(source:Araport11)
AT2G45540.3	protein_coding			WD-40 repeat family protein / beige-like protein;(source:Araport11)
AT5G23910.2	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT3G14075.3	protein_coding			Mono-/di-acylglycerol lipase, N-terminal;(source:Araport11)
AT2G45540.4	protein_coding			WD-40 repeat family protein / beige-like protein;(source:Araport11)
AT2G13985.1	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT2G45540.6	protein_coding			WD-40 repeat family protein / beige-like protein;(source:Araport11)
AT3G16320.4	protein_coding		Subunit in the anaphase-promoting complex. Role in gametogenesis, control of mitotic  progression and cell differentiation during the entire life cycle.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G15390.3	protein_coding		Encodes a novel protein that is similar to PRL1 interacting factor and is involved in virus induced silencing.	silencing defective 5;(source:Araport11)
AT2G14080.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G06113.1	long_noncoding_rna			None;(source:Araport11)
AT4G24580.2	protein_coding		Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube.	Rho GTPase activation protein (RhoGAP) with PH domain-containing protein;(source:Araport11)
AT4G24580.3	protein_coding		Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube.	Rho GTPase activation protein (RhoGAP) with PH domain-containing protein;(source:Araport11)
AT5G41150.3	protein_coding		Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair  and yeast Rad1 proteins	Restriction endonuclease, type II-like superfamily protein;(source:Araport11)
AT2G42320.3	protein_coding			nucleolar protein gar2-like protein;(source:Araport11)
AT2G42320.4	protein_coding			nucleolar protein gar2-like protein;(source:Araport11)
AT5G41150.4	protein_coding		Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair  and yeast Rad1 proteins	Restriction endonuclease, type II-like superfamily protein;(source:Araport11)
AT1G61190.4	protein_coding		Putative CC-NB-LRR resistance gene. It Primes ortholog in ecotype Wei-0 RPP39 (R_190-Wei-0, accession number JQ045573, PMID:22359513) has been shown experimentally to recognize the effector ATR39-1 produced by Hyaloperonospora arabidopsidis (Hpa).The mRNA is cell-to-cell mobile.	LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT2G42520.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G45560.3	protein_coding		cytochrome P450 monooxygenase	cytochrome P450, family 76, subfamily C, polypeptide 1;(source:Araport11)
AT2G38460.8	protein_coding		Encodes IRON REGULATED1 (IREG1/FPN1), one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.	iron regulated 1;(source:Araport11)
AT1G08313.1	long_noncoding_rna			None;(source:Araport11)
AT2G42520.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G20720.2	protein_coding			RAD3-like DNA-binding helicase protein;(source:Araport11)
AT5G40310.2	protein_coding			Exonuclease family protein;(source:Araport11)
AT4G05450.2	protein_coding			mitochondrial ferredoxin 1;(source:Araport11)
AT3G21295.3	protein_coding		Pro-Trp-Pro-Trp repeat protein.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT3G21295.2	protein_coding		Pro-Trp-Pro-Trp repeat protein.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT1G31500.7	protein_coding		HESP identified based on similarity to nocturnins and presence circadian regulatory elements in the promoter. It functions as a Mg(II) dependent poly(A) exoribonuclease.It is under circadian regulation and expressed at night. Knockdowns affect the regulation of circadian genes CCA1 and TOC1.	DNAse I-like superfamily protein;(source:Araport11)
AT1G31500.6	protein_coding		HESP identified based on similarity to nocturnins and presence circadian regulatory elements in the promoter. It functions as a Mg(II) dependent poly(A) exoribonuclease.It is under circadian regulation and expressed at night. Knockdowns affect the regulation of circadian genes CCA1 and TOC1.	DNAse I-like superfamily protein;(source:Araport11)
AT1G31500.8	protein_coding		HESP identified based on similarity to nocturnins and presence circadian regulatory elements in the promoter. It functions as a Mg(II) dependent poly(A) exoribonuclease.It is under circadian regulation and expressed at night. Knockdowns affect the regulation of circadian genes CCA1 and TOC1.	DNAse I-like superfamily protein;(source:Araport11)
AT4G35290.3	protein_coding		Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family	glutamate receptor 2;(source:Araport11)
AT4G35290.4	protein_coding		Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family	glutamate receptor 2;(source:Araport11)
AT4G35290.5	protein_coding		Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family	glutamate receptor 2;(source:Araport11)
AT4G35290.6	protein_coding		Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family	glutamate receptor 2;(source:Araport11)
AT1G05483.1	long_noncoding_rna			None;(source:Araport11)
AT2G44090.3	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT3G02920.3	protein_coding			Replication protein A, subunit RPA32;(source:Araport11)
AT3G53270.8	protein_coding			Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein;(source:Araport11)
AT5G08980.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G60860;(source:Araport11)
AT5G40550.3	protein_coding			SGF29 tudor-like domain-containing protein;(source:Araport11)
AT3G09845.1	long_noncoding_rna			None;(source:Araport11)
AT2G16890.4	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G16890.3	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G53370.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G14030.5	protein_coding			translocon-associated protein beta (TRAPB) family protein;(source:Araport11)
AT1G31720.2	protein_coding			chitin synthase, putative (DUF1218);(source:Araport11)
AT1G53050.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G68200.3	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G68200.4	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G68200.5	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G68200.6	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT3G58620.2	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones. The TTL family is required for osmotic stress tolerance and male sporogenesis.	tetratricopetide-repeat thioredoxin-like 4;(source:Araport11)
AT2G16090.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G39890.2	protein_coding			2-aminoethanethiol dioxygenase, putative (DUF1637);(source:Araport11)
AT5G50130.4	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G12990.4	protein_coding		Encodes a 3 Prime-5 Prime exoribonuclease, partially redundant with CER7. Involved in epicuticular wax biosynthesis.	ribonuclease PH45A;(source:Araport11)
AT3G05355.1	small_nucleolar_rna			None;(source:Araport11)
AT1G17610.2	protein_coding		TN-type protein that controls temperature-dependent growth and defense responses .Mutant accumulates steryl-esters at low temperatures and shows temperature dependent activation of defense responses..	Disease resistance protein (TIR-NBS class);(source:Araport11)
AT5G42390.2	protein_coding		Encodes a chloroplast-localized metalloprotease that is essential for embryo development.  Mutants do not progress normally beyond the 16-cell stage.The mRNA is cell-to-cell mobile.	Insulinase (Peptidase family M16) family protein;(source:Araport11)
AT3G61750.2	protein_coding			Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein;(source:Araport11)
AT4G29910.2	protein_coding		Origin Recognition Complex subunit 5. Involved in the initiation of DNA replication. Interacts strongly with all ORC subunits.	origin recognition complex protein 5;(source:Araport11)
AT5G53050.6	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G53050.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G53050.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G56680.2	protein_coding			Chitinase family protein;(source:Araport11)
AT1G49205.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G18920.2	protein_coding			Cox19-like CHCH family protein;(source:Araport11)
AT2G47070.2	protein_coding		member of SPL gene family, encodes DNA binding proteins and putative transcription factors.  All have the SBP-box, which encodes the SBP-domain, required for and  sufficient for interaction with DNA.	squamosa promoter binding protein-like 1;(source:Araport11)
AT4G34730.2	protein_coding			ribosome-binding factor A family protein;(source:Araport11)
AT4G34730.3	protein_coding			ribosome-binding factor A family protein;(source:Araport11)
AT1G04453.1	long_noncoding_rna			None;(source:Araport11)
AT3G12980.2	protein_coding		Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates.  No  single prior lysine acetylation is sufficient to block HAC5 acetylation of the H3 or H4 peptides,  suggesting that HAC5 can acetylate any  of several lysines present in the peptides. Di-acetylation of  both lysines 9 and 14 on the H3 peptide significantly reduces  the level of incorporated radioactive acetylation catalyzed by  HAC5, indicating that HAC5 may acetylate either lysine 9 or  lysine 14.The mRNA is cell-to-cell mobile.	histone acetyltransferase of the CBP family 5;(source:Araport11)
AT3G01805.1	long_noncoding_rna			None;(source:Araport11)
AT5G65460.3	protein_coding		Kinesin that binds cyclin-dependent kinase CDKA;1 as homodimer or as heterodimer with KCA1	kinesin like protein for actin based chloroplast movement 2;(source:Araport11)
AT5G65460.2	protein_coding		Kinesin that binds cyclin-dependent kinase CDKA;1 as homodimer or as heterodimer with KCA1	kinesin like protein for actin based chloroplast movement 2;(source:Araport11)
AT2G41160.2	protein_coding		ATI3A interacting protein containing a large N-terminal rhomboid-like transmembrane domain and a UBA domain at their C terminus, localized in the ER with a role in plant heat tolerance. UBAC2 proteins may act as both cargo receptors and inducers of an ATI3-mediated selective autophagy pathway, where ATI3 and UBAC2 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	Ubiquitin-associated (UBA) protein;(source:Araport11)
AT5G65460.5	protein_coding		Kinesin that binds cyclin-dependent kinase CDKA;1 as homodimer or as heterodimer with KCA1	kinesin like protein for actin based chloroplast movement 2;(source:Araport11)
AT5G65460.4	protein_coding		Kinesin that binds cyclin-dependent kinase CDKA;1 as homodimer or as heterodimer with KCA1	kinesin like protein for actin based chloroplast movement 2;(source:Araport11)
AT2G27950.2	protein_coding			Ring/U-Box superfamily protein;(source:Araport11)
AT1G05313.1	long_noncoding_rna			None;(source:Araport11)
AT1G01670.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G01670.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G33420.2	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G05775.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT5G06655.1	long_noncoding_rna			None;(source:Araport11)
AT1G30300.4	protein_coding			Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT5G07235.2	novel_transcribed_region			novel transcribed region; detected in leaf, light-grown seedling;(source:Araport11)
AT2G35620.4	protein_coding		Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.Mucilage is easily detached from fei2 mutants seeds, and forms a capsule that is >50% smaller relative to wild-type.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G35620.3	protein_coding		Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.Mucilage is easily detached from fei2 mutants seeds, and forms a capsule that is >50% smaller relative to wild-type.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G30300.2	protein_coding			Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT1G30300.3	protein_coding			Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT5G63630.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G05990.1	long_noncoding_rna			None;(source:Araport11)
AT1G55120.4	protein_coding		Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.	beta-fructofuranosidase 5;(source:Araport11)
AT2G41170.2	protein_coding			F-box family protein;(source:Araport11)
AT2G41170.3	protein_coding			F-box family protein;(source:Araport11)
AT5G12290.3	protein_coding		Encodes a mitochondrial outer membrane protein, involved in galactoglycerolipid biosynthesis. The dgd1 mutant phenotype is suppressed in the dgs1 mutant background.	dgd1 suppressor 1;(source:Araport11)
AT4G25280.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G35800.2	protein_coding		Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit.	RNA polymerase II large subunit;(source:Araport11)
AT2G04790.7	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G04790.6	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G04790.5	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G04790.9	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G04790.8	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT5G11430.6	protein_coding			SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT5G11430.5	protein_coding			SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT5G11430.4	protein_coding			SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT1G79190.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT2G04685.1	long_noncoding_rna			None;(source:Araport11)
AT2G07985.1	long_noncoding_rna			None;(source:Araport11)
AT1G65510.2	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT3G46565.1	protein_coding			NAC (No apical meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT3G08745.1	long_noncoding_rna			None;(source:Araport11)
AT1G07147.1	long_noncoding_rna			None;(source:Araport11)
AT4G33280.3	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT4G33280.2	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT1G28765.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G05845.1	long_noncoding_rna			None;(source:Araport11)
AT1G28765.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G30910.2	protein_coding			Cytosol aminopeptidase family protein;(source:Araport11)
AT1G34110.2	protein_coding			Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT3G20080.4	protein_coding			cytochrome P450, family 705, subfamily A, polypeptide 15;(source:Araport11)
AT3G20080.5	protein_coding			cytochrome P450, family 705, subfamily A, polypeptide 15;(source:Araport11)
AT3G20080.6	protein_coding			cytochrome P450, family 705, subfamily A, polypeptide 15;(source:Araport11)
AT2G42260.2	protein_coding		Encodes a novel plant-specific protein of unknown function. The UVI4 gene is expressed mainly in actively dividing cells. The hypocotyl cells in mutant seedlings undergo one extra round of endoreduplication. The uvi4 mutation also promoted the progression of endo-reduplication during leaf development.	uv-b-insensitive 4;(source:Araport11)
AT4G05085.1	long_noncoding_rna			None;(source:Araport11)
AT1G11660.2	protein_coding			heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT1G09057.1	long_noncoding_rna			None;(source:Araport11)
AT3G12170.2	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G09150.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G63290;(source:Araport11)
AT4G34580.2	protein_coding		Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth.	Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT4G32780.3	protein_coding		FORKED-LIKE family member, part of Group 2 (Group 1 consists of FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	phosphoinositide binding protein;(source:Araport11)
AT4G32780.2	protein_coding		FORKED-LIKE family member, part of Group 2 (Group 1 consists of FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	phosphoinositide binding protein;(source:Araport11)
AT5G06795.1	long_noncoding_rna			None;(source:Araport11)
AT2G46810.3	protein_coding		MYC-type transcription factor which interacts with ICE1 and negatively regulates cold-responsive genes and cold tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G53570.6	protein_coding		Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK3 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens.	mitogen-activated protein kinase kinase kinase 3;(source:Araport11)
AT5G11840.3	protein_coding			YCF36, putative (DUF1230);(source:Araport11)
AT5G64910.4	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT2G17840.2	protein_coding		Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.	Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT3G48970.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G48970.3	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G64910.3	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT1G04017.1	long_noncoding_rna			None;(source:Araport11)
AT4G37820.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G31130.5	protein_coding			hypothetical protein;(source:Araport11)
AT5G06570.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G18680.2	protein_coding		Encodes a functional UMP Kinase located in the plastid that binds to group II intron plastid transcription products. Mutants show decreased accumulation of target transcripts/proteins.	Amino acid kinase family protein;(source:Araport11)
AT4G19645.4	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G06583.1	long_noncoding_rna			None;(source:Araport11)
AT1G31290.3	protein_coding			ARGONAUTE 3;(source:Araport11)
AT1G31290.2	protein_coding			ARGONAUTE 3;(source:Araport11)
AT4G06150.1	novel_transcribed_region			novel transcribed region; detected in light-grown seedling, pollen;(source:Araport11)
AT3G00250.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G25670.uORF1	uORF			Derives_from AT4G25670;(source:Araport11)
AT2G08155.1	long_noncoding_rna			None;(source:Araport11)
AT3G01665.1	long_noncoding_rna			None;(source:Araport11)
AT1G04240.2	protein_coding		SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.	AUX/IAA transcriptional regulator family protein;(source:Araport11)
AT2G09695.1	small_nucleolar_rna			None;(source:Araport11)
AT2G23040.4	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT2G23040.5	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT2G23040.6	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT2G23040.7	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT1G03920.2	protein_coding			Protein kinase family protein;(source:Araport11)
AT1G03920.3	protein_coding			Protein kinase family protein;(source:Araport11)
AT2G23040.2	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT2G23040.3	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT4G09825.1	long_noncoding_rna			None;(source:Araport11)
AT3G17310.3	protein_coding		Encodes DRM3 (Domains Rearranged Methyltransferase3), a catalytically mutated paralog of the cytosine methyltransferase DRM2. Despite being catalytically mutated, DRM3 is required for normal maintenance of non-CG DNA methylation, establishment of RNA-directed DNA methylation triggered by repeat sequences and accumulation of repeat-associated small RNAs.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G17310.7	protein_coding			hypothetical protein;(source:Araport11)
AT1G04137.1	long_noncoding_rna			None;(source:Araport11)
AT5G44190.2	protein_coding		Encodes GLK2, Golden2-like 2, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner.  GLK1, Golden2-like 1, is encoded by At2g20570. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.	GOLDEN2-like 2;(source:Araport11)
AT4G35620.2	protein_coding			Cyclin B2;(source:Araport11)
AT5G09460.uORF3	uORF			Derives_from AT5G09460;(source:Araport11)
AT2G09560.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44850;(source:Araport11)
AT2G25710.3	protein_coding		Encodes a dual-targeted biotin holocarboxylase synthetase that can localize to the chloroplast and the cytosol. In vitro, it has been shown to catalyze the addition of biotin to the BCCP subunit of acetyl-CoA carboxylase and it can also biotinylate methylcrotonyl-CoA carboxylase. A small upstream ORF in the 5 PrimeUTR (uORF24) regulates the differential targeting of this enzyme.	holocarboxylase synthase 1;(source:Araport11)
AT4G11740.2	protein_coding		Isolated as a suppressor of a dominant mutant in the Ara4 gene that was expressed in yeast ypt1 mutant strains. A novel protein with a small region of similarity to coil-coiled domain of yeast VSP27 protein.	Ubiquitin-like superfamily protein;(source:Araport11)
AT1G08210.3	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G08210.2	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G08210.4	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G08685.1	long_noncoding_rna			None;(source:Araport11)
AT5G41130.3	protein_coding			Esterase/lipase/thioesterase family protein;(source:Araport11)
AT5G44450.2	protein_coding			alpha amino-terminal protein methyltransferase;(source:Araport11)
AT5G38820.3	protein_coding		Encodes a putative amino acid transporter.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT4G03490.4	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT4G03490.3	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT4G24250.2	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT1G48510.4	protein_coding			Surfeit locus 1 cytochrome c oxidase biogenesis protein;(source:Araport11)
AT5G23990.2	protein_coding		Encodes a ferric chelate reductase that is expressed at low levels in roots,shoots and flowers, but not cotyledons.	ferric reduction oxidase 5;(source:Araport11)
AT2G09570.1	long_noncoding_rna			None;(source:Araport11)
AT3G07360.8	protein_coding		The AT3G07360.1 gene model encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. The proteins predicted to be encoded by the AT3G07360.2 and AT3G07360.3 gene models lack the U-box domain.  Together with AtARK2, it is required for auxin-mediated lateral root development under phosphate-starved conditions.PUB9 forms punctate structures and co-localizes with the autophagosomal marker ATG8 in the presence of ARK2. Plants lacking both AtPUB9 and ARK2 are defective in LR formation under phosphate starvation.Phosphate starvation leads to PUB9 localization on punctate sub-cellular structures in planta.	plant U-box 9;(source:Araport11)
AT3G07360.9	protein_coding		The AT3G07360.1 gene model encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. The proteins predicted to be encoded by the AT3G07360.2 and AT3G07360.3 gene models lack the U-box domain.  Together with AtARK2, it is required for auxin-mediated lateral root development under phosphate-starved conditions.PUB9 forms punctate structures and co-localizes with the autophagosomal marker ATG8 in the presence of ARK2. Plants lacking both AtPUB9 and ARK2 are defective in LR formation under phosphate starvation.Phosphate starvation leads to PUB9 localization on punctate sub-cellular structures in planta.	plant U-box 9;(source:Araport11)
AT3G20640.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G20640.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G07360.4	protein_coding		The AT3G07360.1 gene model encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. The proteins predicted to be encoded by the AT3G07360.2 and AT3G07360.3 gene models lack the U-box domain.  Together with AtARK2, it is required for auxin-mediated lateral root development under phosphate-starved conditions.PUB9 forms punctate structures and co-localizes with the autophagosomal marker ATG8 in the presence of ARK2. Plants lacking both AtPUB9 and ARK2 are defective in LR formation under phosphate starvation.Phosphate starvation leads to PUB9 localization on punctate sub-cellular structures in planta.	plant U-box 9;(source:Araport11)
AT3G07360.5	protein_coding		The AT3G07360.1 gene model encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. The proteins predicted to be encoded by the AT3G07360.2 and AT3G07360.3 gene models lack the U-box domain.  Together with AtARK2, it is required for auxin-mediated lateral root development under phosphate-starved conditions.PUB9 forms punctate structures and co-localizes with the autophagosomal marker ATG8 in the presence of ARK2. Plants lacking both AtPUB9 and ARK2 are defective in LR formation under phosphate starvation.Phosphate starvation leads to PUB9 localization on punctate sub-cellular structures in planta.	plant U-box 9;(source:Araport11)
AT3G03395.2	novel_transcribed_region			novel transcribed region; detected in root, leaf, dark-grown seedling, light-grown seedling;(source:Araport11)
AT3G02835.1	long_noncoding_rna			None;(source:Araport11)
AT3G20640.4	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G03395.1	novel_transcribed_region			novel transcribed region; detected in root, leaf, dark-grown seedling, light-grown seedling;(source:Araport11)
AT5G59930.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G04445.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G03180;(source:Araport11)
AT4G04445.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G03180;(source:Araport11)
AT1G24475.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G31050.4	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G42500.5	protein_coding		Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].  ACR4 phosphorylates the PROTEIN PHOSPHATASE 2A-3 (PP2A-3) catalytic subunit of the PP2A phosphatase holoenzyme and PP2A dephosphorylates ACR4.	protein phosphatase 2A-3;(source:Araport11)
AT5G12920.8	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G10800.2	protein_coding			voltage-gated hydrogen channel-like protein;(source:Araport11)
AT1G09903.1	antisense_rna			Natural antisense transcript overlaps with AT1G79670;(source:Araport11)
AT1G51270.9	protein_coding			vesicle-associated protein 1-4;(source:Araport11)
AT3G14830.3	protein_coding			epstein-barr nuclear antigen;(source:Araport11)
AT5G03530.2	protein_coding		Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.	RAB GTPase homolog C2A;(source:Araport11)
AT1G52730.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G14830.4	protein_coding			epstein-barr nuclear antigen;(source:Araport11)
AT4G08735.1	novel_transcribed_region			novel transcribed region; detected in aerial;(source:Araport11)
AT3G02460.3	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT3G04450.3	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT3G51250.2	protein_coding			Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT5G00900.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G03030;(source:Araport11)
AT3G04450.4	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT3G02460.4	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT3G02460.5	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT5G57090.2	protein_coding		Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation results in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Membrane sterol composition is essential for the acquisition of  PIN2 polarity. Its expression is downregulated at hypoxic conditions. RAP2.12 overexpression inhibits this downregulation.	Auxin efflux carrier family protein;(source:Araport11)
AT5G61960.10	protein_coding		A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.	MEI2-like protein 1;(source:Araport11)
AT5G61960.11	protein_coding		A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.	MEI2-like protein 1;(source:Araport11)
AT3G01930.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G31900.2	pseudogene			pseudogene of FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT3G00850.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00920.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G03420;(source:Araport11)
AT1G67820.2	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G16225.2	protein_coding			Target SNARE coiled-coil domain protein;(source:Araport11)
AT1G16225.3	protein_coding			Target SNARE coiled-coil domain protein;(source:Araport11)
AT3G44730.2	protein_coding			kinesin-like protein 1;(source:Araport11)
AT1G07463.1	long_noncoding_rna			None;(source:Araport11)
AT5G13640.2	protein_coding		arabidopsis phospholipid:diacylglycerol acyltransferase (PDAT)	phospholipid:diacylglycerol acyltransferase;(source:Araport11)
AT5G13640.3	protein_coding		arabidopsis phospholipid:diacylglycerol acyltransferase (PDAT)	phospholipid:diacylglycerol acyltransferase;(source:Araport11)
AT5G38747.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G05545.1	long_noncoding_rna			None;(source:Araport11)
AT1G03430.2	protein_coding		Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs).  AHPs function as redundant positive regulators of cytokinin signaling.  Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	histidine-containing phosphotransfer factor 5;(source:Araport11)
AT3G49645.2	protein_coding			FAD-binding protein;(source:Araport11)
AT3G00750.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G19690.3	protein_coding		Encodes one of the four Arabidopsis phospholipase PLA2 parologs: AT2G06925 (PLA2-ALPHA), AT2G19690 (PLA2-BETA), AT4G29460 (PLA2-GAMMA) and AT4G29470 (PLA2-DELTA). Involved in pollen development and germination and tube growth. Also involved in stomatal opening in response to light.	phospholipase A2-beta;(source:Araport11)
AT3G56990.3	protein_coding			embryo sac development arrest 7;(source:Araport11)
AT3G56990.2	protein_coding			embryo sac development arrest 7;(source:Araport11)
AT4G08195.1	long_noncoding_rna			None;(source:Araport11)
AT3G29050.2	protein_coding			receptor-like protein kinase-like protein;(source:Araport11)
AT3G21390.2	protein_coding		Encodes a mitochondrial thiamin diphosphate carrier.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G04513.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G06800;(source:Araport11)
AT1G07423.1	long_noncoding_rna			None;(source:Araport11)
AT4G07775.1	long_noncoding_rna			None;(source:Araport11)
AT2G04535.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G03620;(source:Araport11)
AT5G07355.1	long_noncoding_rna			None;(source:Araport11)
AT1G06123.1	long_noncoding_rna			None;(source:Araport11)
AT5G18550.3	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G18550.2	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT2G00540.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03485.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G18550.4	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G79580.5	protein_coding		NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT1G79580.4	protein_coding		NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT4G01540.4	protein_coding		Encodes a membrane-bound NAC (for NAM, ATAF1/2, CUC2) transcription factor, designated NTM1 (for NAC with transmembrane motif1).  NTM1 regulates cell division in Arabidopsis.	NAC with transmembrane motif1;(source:Araport11)
AT4G01540.3	protein_coding		Encodes a membrane-bound NAC (for NAM, ATAF1/2, CUC2) transcription factor, designated NTM1 (for NAC with transmembrane motif1).  NTM1 regulates cell division in Arabidopsis.	NAC with transmembrane motif1;(source:Araport11)
AT1G67150.4	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT5G37247.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G09343.1	long_noncoding_rna			None;(source:Araport11)
AT5G07480.2	protein_coding			KAR-UP oxidoreductase 1;(source:Araport11)
AT3G56180.2	protein_coding			LURP-one-like protein (DUF567);(source:Araport11)
AT2G37940.2	protein_coding			Inositol phosphorylceramide synthase 2;(source:Araport11)
AT2G13130.2	pseudogene			pseudogene of F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G25040.5	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G25040.4	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G79820.5	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G09587.1	long_noncoding_rna			None;(source:Araport11)
AT2G07075.1	novel_transcribed_region			novel transcribed region; detected in pollen;(source:Araport11)
AT3G59330.3	protein_coding			solute carrier family 35 protein (DUF914);(source:Araport11)
AT2G17780.8	protein_coding		Encodes a mechanosensitive channel candidate MCA2. The three-dimensional structure of MCA2 was reconstructed and appears to comprise a small transmembrane region and large cytoplasmic region.	PLAC8 family protein;(source:Araport11)
AT1G07960.4	protein_coding		Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.	PDI-like 5-1;(source:Araport11)
AT5G03830.2	protein_coding			CDK inhibitor P21 binding protein;(source:Araport11)
AT5G18230.4	protein_coding			transcription regulator NOT2/NOT3/NOT5 family protein;(source:Araport11)
AT4G00883.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G18350.3	protein_coding			Plant protein of unknown function (DUF639);(source:TAIR10)
AT5G18230.3	protein_coding			transcription regulator NOT2/NOT3/NOT5 family protein;(source:Araport11)
AT5G07575.1	long_noncoding_rna			None;(source:Araport11)
AT1G55690.5	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G55690.4	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT3G08825.1	long_noncoding_rna			None;(source:Araport11)
AT3G47660.6	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G47660.5	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G47660.4	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G47660.3	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G47660.2	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT4G38120.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT4G04555.1	protein_coding			Myb family transcription factor;(source:Araport11)
AT4G20645.1	protein_coding			cysteine-rich receptor-like kinase;(source:Araport11)
AT4G38120.4	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT1G77110.2	protein_coding		Rate-limiting factor in saturable efflux of auxins. PINs are directly involved of in catalyzing cellular auxin efflux.	Auxin efflux carrier family protein;(source:Araport11)
AT4G30160.4	protein_coding		Encodes a major actin filament bundling protein that is involved in root hair growth through regulating actin organization in a Ca2+-dependent manner.	villin 4;(source:Araport11)
AT2G24010.4	protein_coding			serine carboxypeptidase-like 23;(source:Araport11)
AT2G24010.2	protein_coding			serine carboxypeptidase-like 23;(source:Araport11)
AT2G24010.3	protein_coding			serine carboxypeptidase-like 23;(source:Araport11)
AT4G30160.3	protein_coding		Encodes a major actin filament bundling protein that is involved in root hair growth through regulating actin organization in a Ca2+-dependent manner.	villin 4;(source:Araport11)
AT5G44565.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G44565.3	protein_coding			transmembrane protein;(source:Araport11)
AT4G33200.4	protein_coding		member of Myosin-like proteins	myosin;(source:Araport11)
AT1G04503.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G06760;(source:Araport11)
AT1G05000.3	protein_coding		Encodes an atypical dual-speci&#64257;city phosphatase.	Phosphotyrosine protein phosphatases superfamily protein;(source:Araport11)
AT4G14713.3	protein_coding		PPD1 (and its paralog, PPD2) encode plant-specific putative DNA-binding proteins. PPD1 and PPD2 are not found in grasses. Overexpression of PPD reduces lamina size by promoting the early arrest of dispersed meristematic cells DMC proliferation during leaf and silique development. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth. The curvature of a deltappd leaf reflects the difference between excess growth of the lamina and a limitation to the extension capacity of its perimeter.	TIFY domain/Divergent CCT motif family protein;(source:Araport11)
AT2G35738.7	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G35740;(source:Araport11)
AT5G07845.1	long_noncoding_rna			None;(source:Araport11)
AT3G56780.3	protein_coding			FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G32240.3	protein_coding		Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G32240.2	protein_coding		Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G09365.1	long_noncoding_rna			None;(source:Araport11)
AT1G05863.1	long_noncoding_rna			None;(source:Araport11)
AT5G59650.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G38450.2	protein_coding			Sel1 repeat protein;(source:Araport11)
AT1G07863.1	long_noncoding_rna			None;(source:Araport11)
AT1G09597.1	long_noncoding_rna			None;(source:Araport11)
AT5G18210.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G11325.2	protein_coding			Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT1G64670.3	protein_coding		Encodes a epidermally expressed extracellular protein that likely functions as an alpha-beta hydrolase and is required for normal cuticle formation. Homozygous mutant plants are dwarfed and have abnormal leaves, collapsed cells, reduced numbers of trichomes. The specific role of BDG is unclear: it may function in cutin biosynthesis or as a cross-linking enzyme in the cell wall itself.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G64670.2	protein_coding		Encodes a epidermally expressed extracellular protein that likely functions as an alpha-beta hydrolase and is required for normal cuticle formation. Homozygous mutant plants are dwarfed and have abnormal leaves, collapsed cells, reduced numbers of trichomes. The specific role of BDG is unclear: it may function in cutin biosynthesis or as a cross-linking enzyme in the cell wall itself.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G43260.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G28646.3	protein_coding		Encodes a novel protein. The wvd2 gain-of-function mutant has impaired cell expansion and root waving, and changed root skewing.	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT2G07845.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G22740;(source:Araport11)
AT4G07505.1	long_noncoding_rna			None;(source:Araport11)
AT2G22140.2	protein_coding		Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.	essential meiotic endonuclease 1B;(source:Araport11)
AT3G08055.1	long_noncoding_rna			None;(source:Araport11)
AT4G25950.2	protein_coding		V-ATPase G-subunit like protein	vacuolar ATP synthase G3;(source:Araport11)
AT4G14713.5	protein_coding		PPD1 (and its paralog, PPD2) encode plant-specific putative DNA-binding proteins. PPD1 and PPD2 are not found in grasses. Overexpression of PPD reduces lamina size by promoting the early arrest of dispersed meristematic cells DMC proliferation during leaf and silique development. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth. The curvature of a deltappd leaf reflects the difference between excess growth of the lamina and a limitation to the extension capacity of its perimeter.	TIFY domain/Divergent CCT motif family protein;(source:Araport11)
AT5G67488.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G67490;(source:Araport11)
AT4G38550.5	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G14713.4	protein_coding		PPD1 (and its paralog, PPD2) encode plant-specific putative DNA-binding proteins. PPD1 and PPD2 are not found in grasses. Overexpression of PPD reduces lamina size by promoting the early arrest of dispersed meristematic cells DMC proliferation during leaf and silique development. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth. The curvature of a deltappd leaf reflects the difference between excess growth of the lamina and a limitation to the extension capacity of its perimeter.	TIFY domain/Divergent CCT motif family protein;(source:Araport11)
AT5G47490.2	protein_coding			RGPR-like protein;(source:Araport11)
AT5G47490.3	protein_coding			RGPR-like protein;(source:Araport11)
AT1G63490.2	protein_coding		Histone demethylase belonging to the KDM5/JARID1 family which plays crucial roles in response to dehydration stress and abscisic acid (ABA). Directly binds the chromatin of OPEN STOMATA 1 (OST1) and demethylated H3K4me3 for the regulation of OST1 mRNA abundance, thereby modulating the dehydration stress response.	transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT1G63490.3	protein_coding		Histone demethylase belonging to the KDM5/JARID1 family which plays crucial roles in response to dehydration stress and abscisic acid (ABA). Directly binds the chromatin of OPEN STOMATA 1 (OST1) and demethylated H3K4me3 for the regulation of OST1 mRNA abundance, thereby modulating the dehydration stress response.	transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT1G23520.4	protein_coding			hypothetical protein (DUF220);(source:Araport11)
AT1G31050.6	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G16690.2	protein_coding			Nodulin MtN3 family protein;(source:Araport11)
AT5G45060.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G31050.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G59980.2	protein_coding			ARG1-like 2;(source:Araport11)
AT3G05275.1	long_noncoding_rna			None;(source:Araport11)
AT1G56345.2	protein_coding			Pseudouridine synthase family protein;(source:Araport11)
AT3G01510.3	protein_coding		Encodes a putative phosphatase, LSF1, required for normal starch turnover in leaves.	like SEX4 1;(source:Araport11)
AT5G43140.2	protein_coding			Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein;(source:Araport11)
AT1G19940.3	protein_coding			glycosyl hydrolase 9B5;(source:Araport11)
AT1G19940.2	protein_coding			glycosyl hydrolase 9B5;(source:Araport11)
AT4G07190.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G23890;(source:Araport11)
AT4G06325.1	novel_transcribed_region			novel transcribed region; detected in flower, pollen;(source:Araport11)
AT4G05385.1	long_noncoding_rna			None;(source:Araport11)
AT1G07973.1	long_noncoding_rna			None;(source:Araport11)
AT2G07652.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G04970.3	protein_coding			DHHC-type zinc finger family protein;(source:Araport11)
AT5G03835.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G24830;(source:Araport11)
AT3G09135.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G58540;(source:Araport11)
AT2G30650.2	protein_coding			ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT5G56190.6	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G61960.8	protein_coding		A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.	MEI2-like protein 1;(source:Araport11)
AT3G08080.1	long_noncoding_rna			None;(source:Araport11)
AT3G04020.4	protein_coding			hypothetical protein;(source:Araport11)
AT5G61960.9	protein_coding		A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.	MEI2-like protein 1;(source:Araport11)
AT2G16980.5	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G04020.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G51620.3	protein_coding			PAP/OAS1 substrate-binding domain superfamily;(source:Araport11)
AT1G79570.4	protein_coding			kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT1G79570.5	protein_coding			kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT2G07525.1	long_noncoding_rna			None;(source:Araport11)
AT1G79570.2	protein_coding			kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT1G79570.3	protein_coding			kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT3G51640.3	protein_coding			stress response NST1-like protein;(source:Araport11)
AT5G47900.11	protein_coding			heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT1G08775.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G17010.2	protein_coding		MSL8 encodes a protein with similarity to mechano-sensitive channel proteins. MSL8 is expressed specifically in pollen and germinating pollen tubes.It regulates pollen germination and is needed to maintain cellular integrity during pollen hydration and germination.	Mechanosensitive ion channel family protein;(source:Araport11)
AT1G04283.1	long_noncoding_rna			None;(source:Araport11)
AT5G09605.1	long_noncoding_rna			None;(source:Araport11)
AT4G03260.4	protein_coding		MASP1 overexpression promotes growth during drought and promotes microtubule stability and recovery after stress as well as microtubule bundling.MASP1 growth promotion and microtubule stabilization activities are dependent upon serine 670 phosphorylation. MASP1 binds microtubules;this activity is not affected by MASP1 phosphorylation status.MASP1 protein levels are induced by drought post-transcriptionally.	Outer arm dynein light chain 1 protein;(source:Araport11)
AT3G59690.2	protein_coding		Member of IQ67 (CaM binding) domain containing family.	IQ-domain 13;(source:Araport11)
AT5G01400.2	protein_coding		Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64.	HEAT repeat-containing protein;(source:Araport11)
AT5G01475.1	long_noncoding_rna			None;(source:Araport11)
AT2G18260.2	protein_coding		member of SYP11 Gene Family	syntaxin of plants 112;(source:Araport11)
AT1G75060.3	protein_coding		Evening-expressed key component of Sin3-HDAC complex, which bind directly to the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) and PSEUDO-RESPONSE REGULATOR 9 (PRR9) promoters and catalyze histone 3 (H3) deacetylation at the cognate regions to repress expression, allowing the declining phase of their expression at dusk.	histone deacetylase complex subunit;(source:Araport11)
AT2G11890.uORF1	uORF		uORF located in the annotated 5&#8242; UTR of TTM3 (TRIPHOSPHATE TUNNEL METALLOENZYME 3; At2g11890). Plant cell cycle regulator and part of the Arabidopsis APC/C.	Derives_from AT2G11890;(source:Araport11)
AT4G35940.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G00650.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G30330.3	protein_coding		Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.	auxin response factor 6;(source:Araport11)
AT3G23210.2	protein_coding		bHLH34 is a basic helix loop helix transcription factor. It can bind GAGA and E-box cis elements.It is induced by abiotic stressors including ABA, salt and glucose. PGR, a plasma membrane glucose responsive regulator is a target of bHLH34.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G29970.2	protein_coding			B12D protein;(source:Araport11)
AT4G20565.1	protein_coding			receptor-like kinase;(source:Araport11)
AT2G06905.1	long_noncoding_rna			None;(source:Araport11)
AT3G09095.1	long_noncoding_rna			None;(source:Araport11)
AT2G21590.3	protein_coding		Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.	Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT2G21590.4	protein_coding		Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.	Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT2G21590.5	protein_coding		Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.	Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT2G21590.6	protein_coding		Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.	Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT2G21590.7	protein_coding		Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.	Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT3G23270.2	protein_coding			Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT1G65130.5	protein_coding			Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT1G09837.1	antisense_rna			Natural antisense transcript overlaps with AT1G78915;(source:Araport11)
AT1G22640.3	protein_coding		MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expression	myb domain protein 3;(source:Araport11)
AT2G04185.1	long_noncoding_rna			None;(source:Araport11)
AT1G24030.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G80625.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G44340.3	protein_coding		homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions.	hypothetical protein;(source:Araport11)
AT3G44340.5	protein_coding		homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions.	hypothetical protein;(source:Araport11)
AT3G44340.4	protein_coding		homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions.	hypothetical protein;(source:Araport11)
AT5G42690.5	protein_coding			transcription factor, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G42690.4	protein_coding			transcription factor, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G00460.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03260.3	protein_coding		MASP1 overexpression promotes growth during drought and promotes microtubule stability and recovery after stress as well as microtubule bundling.MASP1 growth promotion and microtubule stabilization activities are dependent upon serine 670 phosphorylation. MASP1 binds microtubules;this activity is not affected by MASP1 phosphorylation status.MASP1 protein levels are induced by drought post-transcriptionally.	Outer arm dynein light chain 1 protein;(source:Araport11)
AT1G22660.4	protein_coding			Polynucleotide adenylyltransferase family protein;(source:Araport11)
AT1G22660.5	protein_coding			Polynucleotide adenylyltransferase family protein;(source:Araport11)
AT2G32520.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G22660.3	protein_coding			Polynucleotide adenylyltransferase family protein;(source:Araport11)
AT1G55980.3	protein_coding			FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT1G55980.2	protein_coding			FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT3G57760.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G64470.4	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT5G25560.6	protein_coding			CHY-type/CTCHY-type/RING-type Zinc finger protein;(source:Araport11)
AT1G06580.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G04903.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT4G06425.1	long_noncoding_rna			None;(source:Araport11)
AT4G22950.2	protein_coding		MADS-box protein AGL19	AGAMOUS-like 19;(source:Araport11)
AT2G31360.2	protein_coding		Encodes a protein homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature.  It is involved in the synthesis of the 24:1n-9 and 26:1n-9 components of seed lipids, sphingolipids and the membrane phospholipids phosphatidylserine (PS), and phosphatidylethanolamine (PE).	16:0delta9 desaturase 2;(source:Araport11)
AT3G07705.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G47295;(source:Araport11)
AT4G02430.4	protein_coding		Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G03465.1	long_noncoding_rna			None;(source:Araport11)
AT4G05625.1	long_noncoding_rna			None;(source:Araport11)
AT5G02295.1	small_nucleolar_rna			None;(source:Araport11)
AT5G09250.3	protein_coding		putative transcriptional co-activator (KIWI) mRNA, complete	ssDNA-binding transcriptional regulator;(source:Araport11)
AT2G37440.3	protein_coding			DNAse I-like superfamily protein;(source:Araport11)
AT1G18840.3	protein_coding		Member of IQ67 (CaM binding) domain containing family.	IQ-domain 30;(source:Araport11)
AT5G09250.5	protein_coding		putative transcriptional co-activator (KIWI) mRNA, complete	ssDNA-binding transcriptional regulator;(source:Araport11)
AT1G56700.4	protein_coding			Peptidase C15, pyroglutamyl peptidase I-like protein;(source:Araport11)
AT4G07275.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G24510;(source:Araport11)
AT3G29173.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G22310.2	protein_coding		Sequence similarity ot DEAD-box RNA helicases. Binds RNA and DNA. Involved in drought, salt and cold stress responses.The mRNA is cell-to-cell mobile. Functions as a host factor to promote TuMV replication.	putative mitochondrial RNA helicase 1;(source:Araport11)
AT5G03485.1	long_noncoding_rna			None;(source:Araport11)
AT5G01255.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G06320;(source:Araport11)
AT5G59080.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G07233.1	long_noncoding_rna			None;(source:Araport11)
AT5G39040.2	protein_coding		Encodes a member of TAP subfamily of ABC transporters that is located in the vacuole.  Mutants are hypersensitive to aluminum and the gene product may be important for intracellular movement of some substrate, possibly chelated Al, as part of a mechanism of aluminum sequestration.	transporter associated with antigen processing protein 2;(source:Araport11)
AT2G02410.10	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT2G38780.10	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT5G48710.2	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT2G02148.2	protein_coding			PPR containing protein;(source:Araport11)
AT2G02148.3	protein_coding			PPR containing protein;(source:Araport11)
AT1G04913.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G11890;(source:Araport11)
AT2G02148.5	protein_coding			PPR containing protein;(source:Araport11)
AT5G45210.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G50340.2	protein_coding			DNA repair protein RadA-like protein;(source:Araport11)
AT5G50340.3	protein_coding			DNA repair protein RadA-like protein;(source:Araport11)
AT3G47600.2	protein_coding		Encodes a putative transcription factor (MYB94).	myb domain protein 94;(source:Araport11)
AT4G06815.1	long_noncoding_rna			None;(source:Araport11)
AT5G18065.3	protein_coding			target of trans acting-siR480/255 protein;(source:Araport11)
AT5G02925.1	long_noncoding_rna			None;(source:Araport11)
AT2G11025.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G43770.3	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G23115.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G13700.2	protein_coding			purple acid phosphatase 23;(source:Araport11)
AT1G10900.2	protein_coding			Phosphatidylinositol-4-phosphate 5-kinase family protein;(source:Araport11)
AT1G10900.3	protein_coding			Phosphatidylinositol-4-phosphate 5-kinase family protein;(source:Araport11)
AT4G14410.3	protein_coding		Basic helix loop helix transcription factor involved in stress mediated signaling during germination.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G06355.1	long_noncoding_rna			None;(source:Araport11)
AT3G01990.9	protein_coding		Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.	ACT domain repeat 6;(source:Araport11)
AT3G01990.8	protein_coding		Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.	ACT domain repeat 6;(source:Araport11)
AT3G45140.2	protein_coding		Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection.CFA-Leu, CFA-Val, CFA-Met and CFA-Ala can induce the expression of LOX2.The mRNA is cell-to-cell mobile.	lipoxygenase 2;(source:Araport11)
AT3G01990.3	protein_coding		Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.	ACT domain repeat 6;(source:Araport11)
AT3G01990.2	protein_coding		Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.	ACT domain repeat 6;(source:Araport11)
AT3G01990.7	protein_coding		Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.	ACT domain repeat 6;(source:Araport11)
AT3G01990.6	protein_coding		Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.	ACT domain repeat 6;(source:Araport11)
AT3G01990.5	protein_coding		Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.	ACT domain repeat 6;(source:Araport11)
AT3G01990.4	protein_coding		Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.	ACT domain repeat 6;(source:Araport11)
AT3G02775.1	long_noncoding_rna			None;(source:Araport11)
AT2G22260.9	protein_coding		Encodes a homolog of the E. coli AlkB gene, whose protein product is a DNA repair enzyme important in reversing methylation damage.	oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT2G22260.8	protein_coding		Encodes a homolog of the E. coli AlkB gene, whose protein product is a DNA repair enzyme important in reversing methylation damage.	oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT2G39650.2	protein_coding			cruciferin (DUF506);(source:Araport11)
AT5G42940.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G28350.2	protein_coding		Involved in root cap cell differentiation.	auxin response factor 10;(source:Araport11)
AT2G22260.3	protein_coding		Encodes a homolog of the E. coli AlkB gene, whose protein product is a DNA repair enzyme important in reversing methylation damage.	oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT2G22260.2	protein_coding		Encodes a homolog of the E. coli AlkB gene, whose protein product is a DNA repair enzyme important in reversing methylation damage.	oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT5G21030.2	protein_coding			PAZ domain-containing protein / piwi domain-containing protein;(source:Araport11)
AT4G05210.3	protein_coding			Trimeric LpxA-like enzymes superfamily protein;(source:Araport11)
AT4G05210.2	protein_coding			Trimeric LpxA-like enzymes superfamily protein;(source:Araport11)
AT2G22260.5	protein_coding		Encodes a homolog of the E. coli AlkB gene, whose protein product is a DNA repair enzyme important in reversing methylation damage.	oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT2G22260.4	protein_coding		Encodes a homolog of the E. coli AlkB gene, whose protein product is a DNA repair enzyme important in reversing methylation damage.	oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT3G13740.3	protein_coding		Encodes one of two chloroplast Mini-RNase III-like enzymes in Arabidopsis.  Double mutants display imprecise maturation of 23S rRNA and other rRNAs.	Ribonuclease III family protein;(source:Araport11)
AT1G07710.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT3G13740.5	protein_coding		Encodes one of two chloroplast Mini-RNase III-like enzymes in Arabidopsis.  Double mutants display imprecise maturation of 23S rRNA and other rRNAs.	Ribonuclease III family protein;(source:Araport11)
AT3G13740.4	protein_coding		Encodes one of two chloroplast Mini-RNase III-like enzymes in Arabidopsis.  Double mutants display imprecise maturation of 23S rRNA and other rRNAs.	Ribonuclease III family protein;(source:Araport11)
AT3G13740.6	protein_coding		Encodes one of two chloroplast Mini-RNase III-like enzymes in Arabidopsis.  Double mutants display imprecise maturation of 23S rRNA and other rRNAs.	Ribonuclease III family protein;(source:Araport11)
AT1G25380.2	protein_coding		Encodes a mitochondrial-localized NAD+ transporter that transports NAD+ in a counter exchange mode with ADP and AMP in vitro.	NAD+ transporter 2;(source:Araport11)
AT5G35480.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G07865.1	long_noncoding_rna			None;(source:Araport11)
AT1G07143.1	long_noncoding_rna			None;(source:Araport11)
AT3G56250.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G56250.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G48700.3	protein_coding		Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G48700.2	protein_coding		Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G24900.2	protein_coding			receptor like protein 39;(source:Araport11)
AT5G08195.1	long_noncoding_rna			None;(source:Araport11)
AT1G48700.6	protein_coding		Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G48700.5	protein_coding		Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G48700.4	protein_coding		Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G61490.6	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61490.7	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT2G20250.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G61490.5	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61490.2	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61490.3	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT2G03780.2	protein_coding			Translin family protein;(source:Araport11)
AT3G48070.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G66380.2	protein_coding		Encodes a member of the MYB family of transcription factors. Involved in regulation of anthocyanin biosynthesis. Affects the expression of enzymes involved in later steps of anthocyanin biosynthesis	myb domain protein 114;(source:Araport11)
AT1G60060.2	protein_coding			Serine/threonine-protein kinase WNK (With No Lysine)-like protein;(source:Araport11)
AT1G79520.3	protein_coding			Cation efflux family protein;(source:Araport11)
AT1G12400.2	protein_coding			Nucleotide excision repair, TFIIH, subunit TTDA;(source:Araport11)
AT1G20687.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G25790.2	protein_coding			Tesmin/TSO1-like CXC domain-containing protein;(source:Araport11)
AT2G46700.3	protein_coding			CDPK-related kinase 3;(source:Araport11)
AT1G79520.4	protein_coding			Cation efflux family protein;(source:Araport11)
AT2G08595.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33620;(source:Araport11)
AT2G41505.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G11400.6	protein_coding		The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.	partner of Y14-MAGO;(source:Araport11)
AT1G11400.4	protein_coding		The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.	partner of Y14-MAGO;(source:Araport11)
AT1G11400.5	protein_coding		The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.	partner of Y14-MAGO;(source:Araport11)
AT2G19250.4	pseudogene			pseudogene of ALBINA 1;(source:Araport11)
AT1G13910.2	protein_coding			Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT2G19250.5	pseudogene			pseudogene of ALBINA 1;(source:Araport11)
AT5G10690.2	protein_coding			pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein;(source:Araport11)
AT5G44380.2	protein_coding			FAD-binding Berberine family protein;(source:Araport11)
AT5G07275.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G48800;(source:Araport11)
AT1G52500.3	protein_coding		Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Encodes a formamidopyrimidine-DNA glycosylase that has abasic lyase activity and is able to nick double- stranded oligonucleotides containing 8-oxo-7,8-dihydroguanine (8-oxoG) in vitro.	MUTM homolog-1;(source:Araport11)
AT3G14700.2	protein_coding			SART-1 family;(source:Araport11)
AT1G71530.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G71530.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G09885.1	long_noncoding_rna			None;(source:Araport11)
AT4G40063.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G08615.1	small_nucleolar_rna			None;(source:Araport11)
AT5G36250.2	protein_coding		Encodes a myristoylated 2C-type protein phosphatase that interacts with  the catalytic subunit of SnRK1.The mRNA is cell-to-cell mobile.	Protein phosphatase 2C family protein;(source:Araport11)
AT5G07880.2	protein_coding		member of mammalian SNAP25 Gene Family, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.	synaptosomal-associated protein SNAP25-like 29;(source:Araport11)
AT3G61610.2	protein_coding			Galactose mutarotase-like superfamily protein;(source:Araport11)
AT4G02005.3	other_rna			None;(source:Araport11)
AT1G07257.1	other_rna			None;(source:Araport11)
AT4G02005.6	other_rna			None;(source:Araport11)
AT2G40070.3	protein_coding		Encodes a microtubule-associated protein.	flocculation FLO11-like protein;(source:Araport11)
AT4G02005.4	other_rna			None;(source:Araport11)
AT1G54710.2	protein_coding			autophagy 18h-like protein;(source:Araport11)
AT5G05055.1	long_noncoding_rna			None;(source:Araport11)
AT3G61950.3	protein_coding		MYC-type transcription factor which interacts with ICE1 and negatively regulates cold-responsive genes and cold tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G14180.2	protein_coding		Encodes a protein that is involved in meiotic recombination and is required for meiotic double strand break repair.	putative recombination initiation defect 1;(source:Araport11)
AT3G61950.5	protein_coding		MYC-type transcription factor which interacts with ICE1 and negatively regulates cold-responsive genes and cold tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G61950.4	protein_coding		MYC-type transcription factor which interacts with ICE1 and negatively regulates cold-responsive genes and cold tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G61950.6	protein_coding		MYC-type transcription factor which interacts with ICE1 and negatively regulates cold-responsive genes and cold tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G04063.1	long_noncoding_rna			None;(source:Araport11)
AT3G01990.10	protein_coding		Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.	ACT domain repeat 6;(source:Araport11)
AT4G05645.1	long_noncoding_rna			None;(source:Araport11)
AT3G02165.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G09300;(source:Araport11)
AT2G03865.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT4G09315.1	long_noncoding_rna			None;(source:Araport11)
AT3G17630.2	protein_coding		member of Putative Na+/H+ antiporter family	cation/H+ exchanger 19;(source:Araport11)
AT5G02015.1	long_noncoding_rna			None;(source:Araport11)
AT1G09463.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74440;(source:Araport11)
AT4G23190.2	protein_coding		Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307)	cysteine-rich RLK (RECEPTOR-like protein kinase) 11;(source:Araport11)
AT4G23190.3	protein_coding		Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307)	cysteine-rich RLK (RECEPTOR-like protein kinase) 11;(source:Araport11)
AT4G23190.4	protein_coding		Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307)	cysteine-rich RLK (RECEPTOR-like protein kinase) 11;(source:Araport11)
AT1G04985.2	protein_coding			triacylglycerol lipase-like protein;(source:Araport11)
AT5G09120.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G63020;(source:Araport11)
AT1G18690.4	protein_coding			Galactosyl transferase GMA12/MNN10 family protein;(source:Araport11)
AT2G02765.4	protein_coding			L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase;(source:Araport11)
AT2G02765.1	protein_coding			L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase;(source:Araport11)
AT3G02105.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G09090;(source:Araport11)
AT1G18690.2	protein_coding			Galactosyl transferase GMA12/MNN10 family protein;(source:Araport11)
AT1G18690.3	protein_coding			Galactosyl transferase GMA12/MNN10 family protein;(source:Araport11)
AT1G19270.2	protein_coding		Encodes a ubiquitin-activated peptidase that is a member of a small (7 member) ubiquitin binding protein family. It appears to play a role in regulation of endoreduplication in leaf epidermal tissue.	DA1;(source:Araport11)
AT5G43310.5	protein_coding			COP1-interacting protein-like protein;(source:Araport11)
AT3G13845.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G01650.2	protein_coding		Encodes RGLG1 (RING domain ligase 1), a RING domain ubiquitin E3 ligase that negatively regulates the drought stress response by mediating ERF53 transcriptional activity.  ABA inhibits myristoylation and induces shuttling of the RGLG1 to promote nuclear degradation of PP2CA.	RING domain ligase1;(source:Araport11)
AT1G08717.1	long_noncoding_rna			None;(source:Araport11)
AT2G32010.4	protein_coding		Encodes an inositol polyphosphate 5?-phosphatase (5PTase).  Mediating phosphoinositide signaling.  Involved in establishment of foliar vein patterns.	CVP2 like 1;(source:Araport11)
AT3G03785.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G18870;(source:Araport11)
AT1G05710.13	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G46030.3	protein_coding		Ubiquitin conjugating enzyme E2	ubiquitin-conjugating enzyme 6;(source:Araport11)
AT1G07943.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G54160;(source:Araport11)
AT5G27760.2	protein_coding			Hypoxia-responsive family protein;(source:Araport11)
AT3G27500.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G27500.3	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G16515.2	protein_coding		Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor;(source:Araport11)
AT5G60350.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G06050.1	long_noncoding_rna			None;(source:Araport11)
AT3G00770.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G00770.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G06203.1	long_noncoding_rna			None;(source:Araport11)
AT2G05525.1	small_nucleolar_rna			None;(source:Araport11)
AT5G43870.2	protein_coding		FORKED-LIKE family member, part of Group 1 (FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT5G46340.2	protein_coding		Encodes a homolog of the protein Cas1p known to be involved in polysaccharide O-acetylation in Cryptococcus neoformans. Has high similarity to RWA2 whose mutant displays reduced acetylation.  The protein is expressed in the Golgi and is involved in the acetylation of xylan during secondary wall biosynthesis.	O-acetyltransferase family protein;(source:Araport11)
AT1G79710.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G09443.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74370;(source:Araport11)
AT3G22650.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G37460.2	protein_coding		Encodes a  tetratricopeptide repeat domain containing protein that shows sequence similarity to those of transcriptional repressors in other organisms. Involved in mediating effector-triggered immunity.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G28210.3	protein_coding		DnaJ homolog AtJ1 (atj)	DNAJ heat shock family protein;(source:Araport11)
AT4G24290.3	protein_coding			MAC/Perforin domain-containing protein;(source:Araport11)
AT1G09195.4	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT1G09195.5	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT1G09195.6	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT1G09195.7	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT4G15563.3	protein_coding			F-box-like protein;(source:Araport11)
AT2G05545.1	long_noncoding_rna			None;(source:Araport11)
AT1G09195.3	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT4G20230.2	protein_coding			terpenoid synthase superfamily protein;(source:Araport11)
AT4G06405.1	small_nuclear_rna			U1;(source:Araport11)
AT1G09195.8	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT1G09195.9	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT4G15563.9	protein_coding			F-box-like protein;(source:Araport11)
AT4G15563.8	protein_coding			F-box-like protein;(source:Araport11)
AT3G58585.1	protein_coding			PPR containing protein;(source:Araport11)
AT1G49360.5	protein_coding			F-box family protein;(source:Araport11)
AT1G69572.3	antisense_long_noncoding_rna		Circadian regulated lncRNA, natural antisense gene of  CDF5 (AT1G69570). Displays antiphasic expression pattern in relation to CDF5 expression (PMID:28758689).	Natural antisense transcript overlaps with AT1G69570;(source:Araport11)
AT1G69572.2	antisense_long_noncoding_rna		Circadian regulated lncRNA, natural antisense gene of  CDF5 (AT1G69570). Displays antiphasic expression pattern in relation to CDF5 expression (PMID:28758689).	Natural antisense transcript overlaps with AT1G69570;(source:Araport11)
AT4G06970.1	long_noncoding_rna			None;(source:Araport11)
AT3G46540.2	protein_coding			ENTH/VHS family protein;(source:Araport11)
AT1G66300.2	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT3G02895.1	long_noncoding_rna			None;(source:Araport11)
AT5G22300.2	protein_coding		encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway.The mRNA is cell-to-cell mobile.	nitrilase 4;(source:Araport11)
AT1G19835.6	protein_coding		TCS1 encodes a coiled-coil domain protein that binds to microtubules and co-localizes with the cortical microtubules. Mutants have defects in trichome branching and hypocotyl elongation. TCS1 interacts with ZWI and appears to be involved in microtubule assembly.	filament-like protein (DUF869);(source:Araport11)
AT1G24660.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G19835.4	protein_coding		TCS1 encodes a coiled-coil domain protein that binds to microtubules and co-localizes with the cortical microtubules. Mutants have defects in trichome branching and hypocotyl elongation. TCS1 interacts with ZWI and appears to be involved in microtubule assembly.	filament-like protein (DUF869);(source:Araport11)
AT1G19835.5	protein_coding		TCS1 encodes a coiled-coil domain protein that binds to microtubules and co-localizes with the cortical microtubules. Mutants have defects in trichome branching and hypocotyl elongation. TCS1 interacts with ZWI and appears to be involved in microtubule assembly.	filament-like protein (DUF869);(source:Araport11)
AT3G12250.6	protein_coding		basic leucine zipper transcription factor involved in the activation of SA-responsive genes.	TGACG motif-binding factor 6;(source:Araport11)
AT1G19835.3	protein_coding		TCS1 encodes a coiled-coil domain protein that binds to microtubules and co-localizes with the cortical microtubules. Mutants have defects in trichome branching and hypocotyl elongation. TCS1 interacts with ZWI and appears to be involved in microtubule assembly.	filament-like protein (DUF869);(source:Araport11)
AT4G16855.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G35240.4	protein_coding			DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632);(source:Araport11)
AT5G58575.2	protein_coding		Component of the deubiquitination module of the SAGA complex.	SAGA-associated factor-like protein;(source:Araport11)
AT4G26640.5	protein_coding		member of WRKY Transcription Factor; Group I	WRKY family transcription factor family protein;(source:Araport11)
AT4G06960.1	long_noncoding_rna			None;(source:Araport11)
AT5G39220.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G02875.2	protein_coding		Hydrolyzes amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Leu and IAA-Phe. Uses Mg and Co ions as cofactors.	Peptidase M20/M25/M40 family protein;(source:Araport11)
AT3G02875.3	protein_coding		Hydrolyzes amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Leu and IAA-Phe. Uses Mg and Co ions as cofactors.	Peptidase M20/M25/M40 family protein;(source:Araport11)
AT1G21120.2	protein_coding			O-methyltransferase family protein;(source:Araport11)
AT3G09730.3	protein_coding			POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein;(source:Araport11)
AT4G32600.2	protein_coding			C3H4 type zinc finger protein;(source:Araport11)
AT1G43860.2	protein_coding			sequence-specific DNA binding transcription factor;(source:Araport11)
AT1G04030.2	protein_coding			eisosome protein;(source:Araport11)
AT4G07290.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G24810;(source:Araport11)
AT1G43130.3	protein_coding			like COV 2;(source:Araport11)
AT5G57120.2	protein_coding			nucleolar/coiled-body phosphoprotein;(source:Araport11)
AT1G07897.1	small_nucleolar_rna			None;(source:Araport11)
AT1G10810.2	protein_coding			NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G43130.2	protein_coding			like COV 2;(source:Araport11)
AT1G02440.2	protein_coding		A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.	ADP-ribosylation factor D1A;(source:Araport11)
AT3G08165.1	small_nucleolar_rna			None;(source:Araport11)
AT5G22970.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G25580.2	protein_coding			CAP160 protein;(source:Araport11)
AT1G52495.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT5G45560.2	protein_coding			Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein;(source:Araport11)
AT1G08593.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, aerial;(source:Araport11)
AT1G61080.5	protein_coding			Hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G61080.4	protein_coding			Hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G51075.10	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT1G61080.6	protein_coding			Hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G08295.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT1G61080.3	protein_coding			Hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G61080.2	protein_coding			Hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G51270.15	protein_coding			vesicle-associated protein 1-4;(source:Araport11)
AT1G51270.14	protein_coding			vesicle-associated protein 1-4;(source:Araport11)
AT5G43990.11	protein_coding		Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT5G43990.10	protein_coding		Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT1G51270.11	protein_coding			vesicle-associated protein 1-4;(source:Araport11)
AT1G51270.10	protein_coding			vesicle-associated protein 1-4;(source:Araport11)
AT1G51270.13	protein_coding			vesicle-associated protein 1-4;(source:Araport11)
AT5G43990.14	protein_coding		Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT5G03990.2	protein_coding			FK506-binding-like protein;(source:Araport11)
AT3G01095.1	long_noncoding_rna			None;(source:Araport11)
AT5G11180.2	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.6;(source:Araport11)
AT4G04585.1	long_noncoding_rna			None;(source:Araport11)
AT2G18490.2	protein_coding		GAZ is a nuclear localized transcriptional activator that is regulated (decreased) by GA and ABA levels. GAZ is expressed in the root stele and may function non-cell autonomously to effect hormone mediated control of ground tissue maturation.	C2H2-like zinc finger protein;(source:Araport11)
AT3G49630.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G49630.3	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G13060.3	protein_coding			evolutionarily conserved C-terminal region 5;(source:Araport11)
AT3G13060.4	protein_coding			evolutionarily conserved C-terminal region 5;(source:Araport11)
AT3G13060.5	protein_coding			evolutionarily conserved C-terminal region 5;(source:Araport11)
AT3G13060.6	protein_coding			evolutionarily conserved C-terminal region 5;(source:Araport11)
AT5G35200.2	protein_coding			ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT5G46297.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G62620.10	protein_coding		Encodes a protein of unknown function. Previously this protein has been annotated computationally as a sucrose-phosphatase-related protein. However, the source of this annotation can not be verified. This annotation (sucrose-phosphatase-related) has been removed.	sucrose-phosphatase-like protein;(source:Araport11)
AT5G08170.4	protein_coding			porphyromonas-type peptidyl-arginine deiminase family protein;(source:Araport11)
AT1G33500.2	protein_coding			tropomyosin;(source:Araport11)
AT2G43700.2	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G27900.2	protein_coding			hypothetical protein (DUF1184);(source:Araport11)
AT3G05195.1	long_noncoding_rna			None;(source:Araport11)
AT5G06265.9	protein_coding			hyaluronan mediated motility receptor-like protein;(source:Araport11)
AT4G36052.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G36050;(source:Araport11)
AT4G34320.2	protein_coding			transmembrane protein, putative (DUF677);(source:Araport11)
AT2G09170.1	long_noncoding_rna			None;(source:Araport11)
AT4G13150.5	protein_coding			transmembrane protein;(source:Araport11)
AT4G13150.4	protein_coding			transmembrane protein;(source:Araport11)
AT4G13150.3	protein_coding			transmembrane protein;(source:Araport11)
AT4G13150.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G27400.2	protein_coding		Encodes a pectate lyase involved in response to nematodes.	Pectin lyase-like superfamily protein;(source:Araport11)
AT3G26890.8	protein_coding			meiosis chromosome segregation family protein;(source:Araport11)
AT5G05700.2	protein_coding		Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2.  Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6).  PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence and altered responses to pathogens.	arginine-tRNA protein transferase 1;(source:Araport11)
AT2G27402.2	protein_coding			plastid transcriptionally active protein;(source:Araport11)
AT1G04607.1	long_noncoding_rna			None;(source:Araport11)
AT1G20060.3	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT3G26890.7	protein_coding			meiosis chromosome segregation family protein;(source:Araport11)
AT2G46610.4	protein_coding		Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G05307.1	long_noncoding_rna			None;(source:Araport11)
AT4G15215.11	protein_coding			pleiotropic drug resistance 13;(source:Araport11)
AT2G46610.3	protein_coding		Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G03895.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G19780;(source:Araport11)
AT3G07590.3	protein_coding		SmD1a is one of two Yeast SmD1 orthologs, lower levels than SmD1b.It is localized to the nucleus and may play a minor role in RNA splicing and indirectly facilitating PTGS.	Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT5G61920.5	protein_coding			FLX-like protein;(source:Araport11)
AT5G61920.3	protein_coding			FLX-like protein;(source:Araport11)
AT5G54710.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT2G03260.2	protein_coding			EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT1G56105.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G17310.15	protein_coding			hypothetical protein;(source:Araport11)
AT3G43645.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G28070.2	protein_coding			ABC-2 type transporter family protein;(source:Araport11)
AT3G27990.4	antisense_long_noncoding_rna			None;(source:Araport11)
AT4G18550.2	protein_coding		DSEL is cytosolic acylhydrolase that shows prefential lipase activity against the sn-1 position of several classes of lipids, including 1,3-diacylglycerols and 1-monoacylglycerols. Overexpression of DSEL leads to increased peroxisome and oil body levels in  cotyledons and reduced beta-oxidation activity in seedlings.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G18550.3	protein_coding		DSEL is cytosolic acylhydrolase that shows prefential lipase activity against the sn-1 position of several classes of lipids, including 1,3-diacylglycerols and 1-monoacylglycerols. Overexpression of DSEL leads to increased peroxisome and oil body levels in  cotyledons and reduced beta-oxidation activity in seedlings.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G67710.3	protein_coding		Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Affects ABA-JA crosstalk.	response regulator 11;(source:Araport11)
AT1G67710.2	protein_coding		Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Affects ABA-JA crosstalk.	response regulator 11;(source:Araport11)
AT3G00540.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G35820.2	protein_coding			ureidoglycolate hydrolase;(source:Araport11)
AT3G29290.5	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G04737.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G09850;(source:Araport11)
AT4G32660.4	protein_coding		Encodes protein kinase AME3.	Protein kinase superfamily protein;(source:Araport11)
AT5G00350.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G03005.1	long_noncoding_rna			None;(source:Araport11)
AT3G26395.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G09655.1	long_noncoding_rna			None;(source:Araport11)
AT1G52290.2	protein_coding		Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT2G11983.2	pseudogene			pseudogene of Surfeit locus 1 cytochrome c oxidase biogenesis protein;(source:Araport11)
AT5G11630.3	protein_coding		The mutant is insensitive to oxylipin 9-HOT treatment. Involved in plant defense.	hypothetical protein;(source:Araport11)
AT3G06450.3	protein_coding			HCO3- transporter family;(source:Araport11)
AT2G17770.3	protein_coding		Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT.	basic region/leucine zipper motif 27;(source:Araport11)
AT5G07605.1	long_noncoding_rna			None;(source:Araport11)
AT3G03645.1	long_noncoding_rna			None;(source:Araport11)
AT3G10150.2	protein_coding			purple acid phosphatase 16;(source:Araport11)
AT2G35360.2	protein_coding			ubiquitin family protein;(source:Araport11)
AT2G35360.3	protein_coding			ubiquitin family protein;(source:Araport11)
AT2G08800.1	long_noncoding_rna			None;(source:Araport11)
AT1G05007.1	long_noncoding_rna			None;(source:Araport11)
AT5G61740.2	protein_coding			ABC2 homolog 14;(source:Araport11)
AT2G43160.5	protein_coding			ENTH/VHS family protein;(source:Araport11)
AT1G08815.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G64687.1	protein_coding			ubiquinol oxidase;(source:Araport11)
AT1G75360.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G52040.7	protein_coding		Encodes an arginine/serine-rich splicing factor. Transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS41 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G16945.1	protein_coding			F-box/FBD/LRR protein;(source:Araport11)
AT1G71720.2	protein_coding		Encodes a chloroplast localized protein that regulates the translation of Ycf1 by binding to its mRNA. It is involved in the biogenesis of photosynthetic complexes.	Nucleic acid-binding proteins superfamily;(source:Araport11)
AT4G08075.1	long_noncoding_rna			None;(source:Araport11)
AT2G34170.5	protein_coding			hypothetical protein (DUF688);(source:Araport11)
AT2G34170.6	protein_coding			hypothetical protein (DUF688);(source:Araport11)
AT4G24740.4	protein_coding		a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.	LAMMER-type protein kinase AFC2;(source:Araport11)
AT4G24740.5	protein_coding		a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.	LAMMER-type protein kinase AFC2;(source:Araport11)
AT4G24740.6	protein_coding		a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.	LAMMER-type protein kinase AFC2;(source:Araport11)
AT4G24740.7	protein_coding		a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.	LAMMER-type protein kinase AFC2;(source:Araport11)
AT5G15845.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G15850;(source:Araport11)
AT4G24740.3	protein_coding		a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.	LAMMER-type protein kinase AFC2;(source:Araport11)
AT5G01785.1	small_nucleolar_rna			None;(source:Araport11)
AT3G17765.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G24740.8	protein_coding		a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.	LAMMER-type protein kinase AFC2;(source:Araport11)
AT4G24740.9	protein_coding		a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.	LAMMER-type protein kinase AFC2;(source:Araport11)
AT3G06675.1	long_noncoding_rna			None;(source:Araport11)
AT4G03820.4	protein_coding			transmembrane protein, putative (DUF3537);(source:Araport11)
AT3G08635.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G56040;(source:Araport11)
AT5G52790.5	protein_coding			CBS domain protein with a domain protein (DUF21);(source:Araport11)
AT5G64460.11	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT5G52790.3	protein_coding			CBS domain protein with a domain protein (DUF21);(source:Araport11)
AT5G52790.2	protein_coding			CBS domain protein with a domain protein (DUF21);(source:Araport11)
AT3G18070.4	protein_coding			beta glucosidase 43;(source:Araport11)
AT3G18070.5	protein_coding			beta glucosidase 43;(source:Araport11)
AT2G08675.1	long_noncoding_rna			None;(source:Araport11)
AT5G44280.3	protein_coding		Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.	RING 1A;(source:Araport11)
AT3G15354.3	protein_coding		Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain.  SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants.	SPA1-related 3;(source:Araport11)
AT2G30362.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G30360;(source:Araport11)
AT2G30362.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G30360;(source:Araport11)
AT2G02410.12	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT2G02410.13	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT3G11150.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G09090.1	long_noncoding_rna			None;(source:Araport11)
AT1G09985.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G23710.2	protein_coding			Tic22-like family protein;(source:Araport11)
AT2G07135.1	long_noncoding_rna			None;(source:Araport11)
AT2G32295.2	protein_coding			EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT2G04205.1	long_noncoding_rna			None;(source:Araport11)
AT1G30410.6	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 13;(source:Araport11)
AT4G06725.1	long_noncoding_rna			None;(source:Araport11)
AT2G41417.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G25990.3	protein_coding		chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes	CCT motif family protein;(source:Araport11)
AT1G20060.4	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT5G46500.2	protein_coding			protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein;(source:Araport11)
AT3G20557.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G00060.4	protein_coding			Nucleotidyltransferase family protein;(source:Araport11)
AT2G29390.6	protein_coding		Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.	sterol 4-alpha-methyl-oxidase 2-2;(source:Araport11)
AT3G09620.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G70220.2	protein_coding			RNA-processing, Lsm domain-containing protein;(source:Araport11)
AT4G03015.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03015.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G34360.2	protein_coding			MATE efflux family protein;(source:Araport11)
AT1G08787.1	long_noncoding_rna			None;(source:Araport11)
AT4G03015.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G27730.2	protein_coding			copper ion binding protein;(source:Araport11)
AT5G61940.2	protein_coding			Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT5G61940.3	protein_coding			Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT5G61940.4	protein_coding			Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT5G05380.2	protein_coding			prenylated RAB acceptor 1.B3;(source:Araport11)
AT2G27730.3	protein_coding			copper ion binding protein;(source:Araport11)
AT3G20190.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G33100.2	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase-like D1;(source:Araport11)
AT4G23460.2	protein_coding			Adaptin family protein;(source:Araport11)
AT5G10650.3	protein_coding		JUL1 encode a RING-type E3 ubiquitin ligase that is involved in JA responses. It ubiquitinates the JAV1 jasmonic acid response repressor which is then degraded by the proteosome.	RING/U-box superfamily protein;(source:Araport11)
AT5G47620.5	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G46500.4	protein_coding			protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein;(source:Araport11)
AT2G08455.1	long_noncoding_rna			None;(source:Araport11)
AT3G54540.2	protein_coding		member of GCN subfamily	general control non-repressible 4;(source:Araport11)
AT5G40240.3	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G00875.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G02760;(source:Araport11)
AT1G54150.2	protein_coding		Encodes a chloroplast-localized putative RING-type ubiquitin E3 ligase.	E3 Ubiquitin ligase family protein;(source:Araport11)
AT4G17310.13	protein_coding			hypothetical protein;(source:Araport11)
AT1G16310.2	protein_coding		Cation efflux family protein which affects ABA-JA crosstalk and susceptibility to Mamestra brassicae herbivory.	Cation efflux family protein;(source:Araport11)
AT3G16857.3	protein_coding		Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Also involved in cytokinin-dependent inhibition of hypocotyl elongation and cytokinin-dependent greening and shooting in tissue culture. ARR1, ARR10, and ARR12 are redundant regulators of drought response, with ARR1 being the most critical. ARR1, ARR10 and ARR12 redundantly bind to the promoter of WUSCHEL (WUS), directly activate its transcription. In parallel, ARR1, ARR10 and ARR12 repress the expression of YUCCAs (YUCs), which encode a key enzyme for auxin biosynthesis, indirectly promoting WUS induction. The regulation of ARR1, ARR10 and ARR12 on WUS and YUCs is required for regeneration and maintenance of shoot meristem.	response regulator 1;(source:Araport11)
AT4G25500.8	protein_coding		Encodes an arginine/serine-rich splicing factor. The transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS40 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis (DOI:10.1093/nar/gkv751).	arginine/serine-rich splicing factor 35;(source:Araport11)
AT3G01485.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G04550;(source:Araport11)
AT4G23700.2	protein_coding		member of Putative Na+/H+ antiporter family	cation/H+ exchanger 17;(source:Araport11)
AT1G56070.2	protein_coding		encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive.	Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT5G67500.3	protein_coding		Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.The mRNA is cell-to-cell mobile.	voltage dependent anion channel 2;(source:Araport11)
AT3G13810.6	protein_coding			indeterminate(ID)-domain 11;(source:Araport11)
AT4G25500.5	protein_coding		Encodes an arginine/serine-rich splicing factor. The transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS40 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis (DOI:10.1093/nar/gkv751).	arginine/serine-rich splicing factor 35;(source:Araport11)
AT4G25500.7	protein_coding		Encodes an arginine/serine-rich splicing factor. The transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS40 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis (DOI:10.1093/nar/gkv751).	arginine/serine-rich splicing factor 35;(source:Araport11)
AT4G25500.6	protein_coding		Encodes an arginine/serine-rich splicing factor. The transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS40 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis (DOI:10.1093/nar/gkv751).	arginine/serine-rich splicing factor 35;(source:Araport11)
AT4G11900.10	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT5G57180.4	protein_coding		Transcription regulator responsible for  specific upregulation of the translocon genes  atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.	chloroplast import apparatus 2;(source:Araport11)
AT4G24180.4	protein_coding		Root-specific expression activated in response to rhizobacteria and ACC. Role in induced systemic resistance.	THAUMATIN-LIKE PROTEIN 1;(source:Araport11)
AT4G24180.5	protein_coding		Root-specific expression activated in response to rhizobacteria and ACC. Role in induced systemic resistance.	THAUMATIN-LIKE PROTEIN 1;(source:Araport11)
AT4G24180.2	protein_coding		Root-specific expression activated in response to rhizobacteria and ACC. Role in induced systemic resistance.	THAUMATIN-LIKE PROTEIN 1;(source:Araport11)
AT4G24180.3	protein_coding		Root-specific expression activated in response to rhizobacteria and ACC. Role in induced systemic resistance.	THAUMATIN-LIKE PROTEIN 1;(source:Araport11)
AT1G60640.6	protein_coding			stress response protein;(source:Araport11)
AT1G60640.7	protein_coding			stress response protein;(source:Araport11)
AT2G32560.2	protein_coding			F-box family protein;(source:Araport11)
AT5G05295.1	other_rna			None;(source:Araport11)
AT5G02135.1	other_rna			None;(source:Araport11)
AT5G59750.3	protein_coding			monofunctional riboflavin biosynthesis protein RIBA 3;(source:Araport11)
AT4G05415.1	miRNA_primary_transcript			microRNA ath-MIR5660 precursor;(source:Araport11)
AT5G47430.5	protein_coding			DWNN domain, a CCHC-type zinc finger;(source:Araport11)
AT2G09535.1	long_noncoding_rna			None;(source:Araport11)
AT4G39830.4	protein_coding		role in the degradation of ascorbate to (mono)dehydroascorbate	Cupredoxin superfamily protein;(source:Araport11)
AT5G03095.1	long_noncoding_rna			None;(source:Araport11)
AT5G47430.6	protein_coding			DWNN domain, a CCHC-type zinc finger;(source:Araport11)
AT3G02605.1	long_noncoding_rna			None;(source:Araport11)
AT1G77590.2	protein_coding		Encodes major plastidic long chain acyl-CoA synthetase with a slight substrate preference of oleic acid over any of the other fatty acids.	long chain acyl-CoA synthetase 9;(source:Araport11)
AT2G04345.1	long_noncoding_rna			None;(source:Araport11)
AT5G02115.1	antisense_rna			Natural antisense transcript overlaps with AT5G13850;(source:Araport11)
AT3G51330.3	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G25080.6	protein_coding		Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.	magnesium-protoporphyrin IX methyltransferase;(source:Araport11)
AT5G55790.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G55790.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G13070.2	pseudogene		putative cytochrome P450	pseudogene of cytochrome P450;(source:Araport11)
AT5G01780.3	protein_coding			2-oxoglutarate-dependent dioxygenase family protein;(source:Araport11)
AT2G25850.9	protein_coding		Encodes a poly(A) polymerase. Located in the nucleus.	poly(A) polymerase 2;(source:Araport11)
AT2G25850.8	protein_coding		Encodes a poly(A) polymerase. Located in the nucleus.	poly(A) polymerase 2;(source:Araport11)
AT1G07297.1	long_noncoding_rna			None;(source:Araport11)
AT4G08225.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G29830;(source:Araport11)
AT2G25850.5	protein_coding		Encodes a poly(A) polymerase. Located in the nucleus.	poly(A) polymerase 2;(source:Araport11)
AT2G25850.7	protein_coding		Encodes a poly(A) polymerase. Located in the nucleus.	poly(A) polymerase 2;(source:Araport11)
AT2G25850.6	protein_coding		Encodes a poly(A) polymerase. Located in the nucleus.	poly(A) polymerase 2;(source:Araport11)
AT4G30960.uORF1	uORF			Derives_from AT4G30960;(source:Araport11)
AT1G06597.1	miRNA_primary_transcript			microRNA ath-MIR5654 precursor;(source:Araport11)
AT2G28570.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G05505.1	long_noncoding_rna			None;(source:Araport11)
AT5G03255.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G20940;(source:Araport11)
AT4G18593.2	protein_coding			dual specificity protein phosphatase-like protein;(source:Araport11)
AT1G10300.3	protein_coding		GTPase  involved in HA - and ABA-mediated signaling pathways, particularly during defense respnses to pathogens. A truncated version of NOG1-2 has been detected in Col-0, Ler-0, Rsch-4 ecotypes. Functions similarly to the paralogous gene NOG1-1.	Nucleolar GTP-binding protein;(source:Araport11)
AT1G09585.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G11565.1	protein_coding			reverse transcriptase zinc-binding protein;(source:Araport11)
AT1G09293.1	long_noncoding_rna			None;(source:Araport11)
AT1G57650.3	protein_coding			ATP binding protein;(source:Araport11)
AT3G19552.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G09785.1	antisense_rna			Natural antisense transcript overlaps with AT2G47110;(source:Araport11)
AT1G08763.1	long_noncoding_rna			None;(source:Araport11)
AT3G08090.1	long_noncoding_rna			None;(source:Araport11)
AT5G65225.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G22850.2	protein_coding			SNARE associated Golgi protein family;(source:Araport11)
AT3G26080.2	protein_coding			plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT4G05125.1	long_noncoding_rna			None;(source:Araport11)
AT2G11035.1	protein_coding			reverse transcriptase zinc-binding protein;(source:Araport11)
AT3G04405.1	long_noncoding_rna			None;(source:Araport11)
AT4G03345.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G06905.1	long_noncoding_rna			None;(source:Araport11)
AT5G01895.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G54560.2	protein_coding		Encodes a class XI myosin that is involved in organelle motility, actin organization, and optimal growth of pollen tubes.	Myosin family protein with Dil domain-containing protein;(source:Araport11)
AT5G05590.3	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in the tryptophan biosynthetic pathway.	phosphoribosylanthranilate isomerase 2;(source:Araport11)
AT1G56225.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06533.1	long_noncoding_rna			None;(source:Araport11)
AT3G53710.3	protein_coding		A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	ARF-GAP domain 6;(source:Araport11)
AT3G46355.1	protein_coding			LRR receptor-like Serine/Threonine-kinase;(source:Araport11)
AT1G78780.5	protein_coding			pathogenesis-related family protein;(source:Araport11)
AT5G09715.1	long_noncoding_rna			None;(source:Araport11)
AT4G27240.2	protein_coding			zinc finger (C2H2 type) family protein;(source:Araport11)
AT1G18975.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06517.1	long_noncoding_rna			None;(source:Araport11)
AT2G45400.3	protein_coding		involved in the regulation of brassinosteroid metabolic pathway	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G45400.4	protein_coding		involved in the regulation of brassinosteroid metabolic pathway	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G62100.6	protein_coding		A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	BCL-2-associated athanogene 2;(source:Araport11)
AT2G07641.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G63700.2	protein_coding		Member of MEKK subfamily, a component of the stomatal development regulatory pathway.  Mutations in this locus result in embryo lethality.	Protein kinase superfamily protein;(source:Araport11)
AT5G04165.1	long_noncoding_rna			None;(source:Araport11)
AT3G03325.1	long_noncoding_rna			None;(source:Araport11)
AT1G22140.3	protein_coding			zinc finger CCCH domain protein;(source:Araport11)
AT2G07605.1	small_nucleolar_rna			None;(source:Araport11)
AT2G19170.2	protein_coding		Encodes a novel subtilisin-like serine protease.	subtilisin-like serine protease 3;(source:Araport11)
AT2G33000.2	protein_coding			ubiquitin-associated (UBA)/TS-N domain-containing protein-like protein;(source:Araport11)
AT5G54095.2	protein_coding			proteoglycan-like protein;(source:Araport11)
AT5G01005.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G05190;(source:Araport11)
AT1G28560.3	protein_coding		Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation.	snRNA activating complex family protein;(source:Araport11)
AT2G11810.4	protein_coding		MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation.  Does not contribute to galactolipid synthesis under P1-sufficient conditions.	monogalactosyldiacylglycerol synthase type C;(source:Araport11)
AT2G08185.2	novel_transcribed_region			novel transcribed region; detected in carpel;(source:Araport11)
AT1G05053.1	long_noncoding_rna			None;(source:Araport11)
AT3G44555.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G31860.3	protein_coding		encodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities.	histidine biosynthesis bifunctional protein (HISIE);(source:Araport11)
AT3G44555.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G16520.3	protein_coding		Autophagy protein.	Ubiquitin-like superfamily protein;(source:Araport11)
AT5G27560.3	protein_coding			DUF1995 domain protein, putative (DUF1995);(source:Araport11)
AT5G27560.4	protein_coding			DUF1995 domain protein, putative (DUF1995);(source:Araport11)
AT2G41720.3	protein_coding		Encodes a pentatricopeptide repeat protein that is essential for trans-splicing of a chloroplast small ribosomal subunit transcript.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G43830.2	pseudogene			pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT5G01645.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G09995;(source:Araport11)
AT3G07325.1	long_noncoding_rna			None;(source:Araport11)
AT3G47040.4	protein_coding			Glycosyl hydrolase family protein;(source:Araport11)
AT3G47040.3	protein_coding			Glycosyl hydrolase family protein;(source:Araport11)
AT5G01570.4	protein_coding			plectin-like protein;(source:Araport11)
AT2G39690.3	protein_coding			ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT3G05645.1	long_noncoding_rna			None;(source:Araport11)
AT2G39690.6	protein_coding			ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT2G39690.7	protein_coding			ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT2G39690.4	protein_coding			ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT2G39690.5	protein_coding			ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT4G13550.3	protein_coding		Heat stress inducible plastid monogalactosyldiacylglycerol lipase.	putative triglyceride lipase;(source:Araport11)
AT4G13550.2	protein_coding		Heat stress inducible plastid monogalactosyldiacylglycerol lipase.	putative triglyceride lipase;(source:Araport11)
AT2G39690.8	protein_coding			ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT2G23940.2	protein_coding			transmembrane protein (DUF788);(source:Araport11)
AT3G01640.2	protein_coding		AtGlcAK is a sugar kinase able to phosphorylate D-GlcA to D-GlcA-1-phosphate in the presence of ATP.	glucuronokinase G;(source:Araport11)
AT3G19430.2	protein_coding			late embryogenesis abundant protein-related / LEA protein-like protein;(source:Araport11)
AT2G43830.6	pseudogene			pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT3G30305.4	protein_coding			hypothetical protein;(source:Araport11)
AT2G43830.5	pseudogene			pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT2G26100.2	protein_coding			Galactosyltransferase family protein;(source:Araport11)
AT2G43830.4	pseudogene			pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT1G08953.1	long_noncoding_rna			None;(source:Araport11)
AT5G03755.1	long_noncoding_rna			None;(source:Araport11)
AT5G04675.1	long_noncoding_rna			None;(source:Araport11)
AT2G07495.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G22010;(source:Araport11)
AT2G25740.2	protein_coding			ATP-dependent protease La (LON) domain protein;(source:Araport11)
AT4G00580.2	protein_coding			COP1-interacting protein-like protein;(source:Araport11)
AT4G28680.7	protein_coding		Encodes a stress-induced tyrosine   decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine.  Recombinant TyrDC forms tetramers.	L-tyrosine decarboxylase;(source:Araport11)
AT4G26850.uORF1	uORF			Derives_from AT4G26850;(source:Araport11)
AT1G24070.2	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase-like A10;(source:Araport11)
AT1G08483.1	long_noncoding_rna			None;(source:Araport11)
AT4G13020.8	protein_coding		Encodes a member of the cdc2+ family of protein kinases MHK.  Similar to the mak genes of rats.  mak encodes a protein kinase that may play a role in spermatogenesis.	Protein kinase superfamily protein;(source:Araport11)
AT3G04980.3	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G40160.2	protein_coding		Encodes ankyrin repeat protein EMB506. Mutations in this locus result in embryo lethality.	Ankyrin repeat family protein;(source:Araport11)
AT1G58190.3	protein_coding			receptor like protein 9;(source:Araport11)
AT5G12280.3	protein_coding			SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein;(source:Araport11)
AT5G07975.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G53360;(source:Araport11)
AT3G25540.2	protein_coding		Encodes a ceramide synthase that together with LOH3 is essential for production of ceramides containing Very Long Chain Fatty acid VLCFA-Ceramides(mainly C 22 to 26).	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT3G25540.3	protein_coding		Encodes a ceramide synthase that together with LOH3 is essential for production of ceramides containing Very Long Chain Fatty acid VLCFA-Ceramides(mainly C 22 to 26).	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT2G23600.2	protein_coding		Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES2 appears to be involved in MeSA hydrolysis in planta. This protein does not act on MeGA4, or MEGA9 in vitro and has been show to be capable of hydrolyzing methyl ester nicotinate back to nicotinate.	acetone-cyanohydrin lyase;(source:Araport11)
AT2G23600.3	protein_coding		Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES2 appears to be involved in MeSA hydrolysis in planta. This protein does not act on MeGA4, or MEGA9 in vitro and has been show to be capable of hydrolyzing methyl ester nicotinate back to nicotinate.	acetone-cyanohydrin lyase;(source:Araport11)
AT5G50820.2	protein_coding			NAC domain containing protein 97;(source:Araport11)
AT3G27160.2	protein_coding		GHS1 encodes plastid ribosomal protein S21The mRNA is cell-to-cell mobile.	Ribosomal protein S21 family protein;(source:Araport11)
AT4G38065.1	protein_coding			basic helix loop helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G50590.3	protein_coding			RmlC-like cupins superfamily protein;(source:Araport11)
AT1G50590.2	protein_coding			RmlC-like cupins superfamily protein;(source:Araport11)
AT1G78550.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G34680.2	protein_coding		isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.	Outer arm dynein light chain 1 protein;(source:Araport11)
AT1G29410.3	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.	phosphoribosylanthranilate isomerase 3;(source:Araport11)
AT2G34355.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G29410.6	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.	phosphoribosylanthranilate isomerase 3;(source:Araport11)
AT1G29410.7	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.	phosphoribosylanthranilate isomerase 3;(source:Araport11)
AT1G13450.4	protein_coding		Encodes GT-1, a plant transcription factor that binds to one of the cis-acting elements, BoxII, which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G29410.5	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.	phosphoribosylanthranilate isomerase 3;(source:Araport11)
AT1G16760.2	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT5G03440.3	protein_coding			zinc finger protein;(source:Araport11)
AT3G14550.3	protein_coding		Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots.	geranylgeranyl pyrophosphate synthase 3;(source:Araport11)
AT1G06447.1	long_noncoding_rna			None;(source:Araport11)
AT5G03815.1	long_noncoding_rna			None;(source:Araport11)
AT5G62930.2	protein_coding			SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT5G62930.3	protein_coding			SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT5G17820.2	protein_coding			Peroxidase superfamily protein;(source:Araport11)
AT5G57160.2	protein_coding		Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV.  Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration.  Interacts with the Arabidopsis homologue of XRCC4.	DNA ligase IV;(source:Araport11)
AT5G03215.1	long_noncoding_rna			None;(source:Araport11)
AT5G37690.2	protein_coding			SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT1G33790.3	protein_coding			jacalin lectin family protein;(source:Araport11)
AT2G39330.3	protein_coding			jacalin-related lectin 23;(source:Araport11)
AT1G15410.2	protein_coding			aspartate-glutamate racemase family;(source:Araport11)
AT3G14550.2	protein_coding		Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots.	geranylgeranyl pyrophosphate synthase 3;(source:Araport11)
AT3G13230.2	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT3G51810.2	protein_coding		Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA.  The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.	Stress induced protein;(source:Araport11)
AT4G07905.1	long_noncoding_rna			None;(source:Araport11)
AT1G03770.5	protein_coding		Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.	RING 1B;(source:Araport11)
AT1G03770.4	protein_coding		Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.	RING 1B;(source:Araport11)
AT5G48620.2	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT4G16695.4	protein_coding			transmembrane protein;(source:Araport11)
AT4G16695.5	protein_coding			transmembrane protein;(source:Araport11)
AT4G39850.4	protein_coding		Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.	peroxisomal ABC transporter 1;(source:Araport11)
AT5G48620.3	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G25150.2	protein_coding			F-box family protein;(source:Araport11)
AT5G52330.4	protein_coding			TRAF-like superfamily protein;(source:Araport11)
AT2G20724.2	pseudogene		Annotated as pseudogene of unknown protein.Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167 .	pseudogene of expressed protein;(source:Araport11)
AT5G24260.2	protein_coding			prolyl oligopeptidase family protein;(source:Araport11)
AT1G09595.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G52330.3	protein_coding			TRAF-like superfamily protein;(source:Araport11)
AT5G48620.5	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT2G00750.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00750.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G07670.2	protein_coding		TPLATE complex protein involved in clathrin-mediated endocytosis.	endomembrane-type CA-ATPase 4;(source:Araport11)
AT2G37150.15	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G48660.2	protein_coding			B-cell receptor-associated protein 31-like protein;(source:Araport11)
AT3G29100.4	protein_coding		Encodes a member of the Arabidopsis v-SNARE (vesicle soluble NSF attachment protein receptor) family that has 3 members: VTI11, VTI12, and VTI13.  This gene is not expressed at levels detectable by RT-PCR. However, one EST corresponding to this gene has been isolated.	vesicle transport V-snare 13;(source:Araport11)
AT3G29100.5	protein_coding		Encodes a member of the Arabidopsis v-SNARE (vesicle soluble NSF attachment protein receptor) family that has 3 members: VTI11, VTI12, and VTI13.  This gene is not expressed at levels detectable by RT-PCR. However, one EST corresponding to this gene has been isolated.	vesicle transport V-snare 13;(source:Araport11)
AT4G06785.1	antisense_rna			Natural antisense transcript overlaps with AT4G18400;(source:Araport11)
AT3G29100.3	protein_coding		Encodes a member of the Arabidopsis v-SNARE (vesicle soluble NSF attachment protein receptor) family that has 3 members: VTI11, VTI12, and VTI13.  This gene is not expressed at levels detectable by RT-PCR. However, one EST corresponding to this gene has been isolated.	vesicle transport V-snare 13;(source:Araport11)
AT5G00605.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G68090.2	protein_coding		Encodes a calcium-binding protein annexin (AnnAt5). Plays a vital role in pollen development via Ca2+ dependent membrane trafficking.	annexin 5;(source:Araport11)
AT5G06530.4	protein_coding		Encodes ABCG22, an ABC transporter gene. Mutation results in increased water transpiration and drought susceptibility.	ABC-2 type transporter family protein;(source:Araport11)
AT5G65210.7	protein_coding		Encodes TGA1, a redox-controlled regulator of systemic acquired resistance.  TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.	bZIP transcription factor family protein;(source:Araport11)
AT2G30933.3	protein_coding			Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT2G48130.2	protein_coding		Encodes a plasma membrane-localized glycosylphosphatidylinositol-anchored lipid transfer protein expressed in root endodermis and seed coats that is involved in very long chain fatty acid (and their derivatives) transport.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G55520.3	protein_coding			FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT1G13770.3	protein_coding			root UVB sensitive protein (Protein of unknown function, DUF647);(source:Araport11)
AT1G76660.2	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G47460.2	protein_coding		member of SMC subfamily	Structural maintenance of chromosomes (SMC) family protein;(source:Araport11)
AT1G13770.4	protein_coding			root UVB sensitive protein (Protein of unknown function, DUF647);(source:Araport11)
AT5G61220.2	protein_coding			LYR family of Fe/S cluster biogenesis protein;(source:Araport11)
AT4G29170.3	protein_coding		A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis.	Mnd1 family protein;(source:Araport11)
AT2G07615.1	small_nucleolar_rna			None;(source:Araport11)
AT3G05585.1	long_noncoding_rna			None;(source:Araport11)
AT5G00450.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G61200.4	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT2G23980.10	protein_coding		Encodes a cyclic GMP-activated non-selective cation channel in the plasma membrane of guard cells.	cyclic nucleotide-gated channel 6;(source:Araport11)
AT1G06737.1	long_noncoding_rna			None;(source:Araport11)
AT2G37840.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G25055.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G27370.5	protein_coding		In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.  SPL10 also controls lamina shape during vegetative development.	squamosa promoter binding protein-like 10;(source:Araport11)
AT3G24890.3	protein_coding		member of VAMP72 Gene Family	vesicle-associated membrane protein 728;(source:Araport11)
AT5G48640.4	protein_coding			Cyclin family protein;(source:Araport11)
AT5G48640.5	protein_coding			Cyclin family protein;(source:Araport11)
AT5G48640.2	protein_coding			Cyclin family protein;(source:Araport11)
AT3G00420.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G20410.2	protein_coding			Pseudouridine synthase family protein;(source:Araport11)
AT2G30170.4	protein_coding		Encodes a chloroplast PP2C phosphatase that is required for efficient dephosphorylation of PSII proteins and involved in light acclimation.	Protein phosphatase 2C family protein;(source:Araport11)
AT2G30170.5	protein_coding		Encodes a chloroplast PP2C phosphatase that is required for efficient dephosphorylation of PSII proteins and involved in light acclimation.	Protein phosphatase 2C family protein;(source:Araport11)
AT1G77280.2	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT4G00975.3	antisense_rna			Natural antisense transcript overlaps with AT4G00980;(source:Araport11)
AT4G10060.2	protein_coding			Beta-glucosidase, GBA2 type family protein;(source:Araport11)
AT2G30170.3	protein_coding		Encodes a chloroplast PP2C phosphatase that is required for efficient dephosphorylation of PSII proteins and involved in light acclimation.	Protein phosphatase 2C family protein;(source:Araport11)
AT3G00440.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G77320.3	protein_coding		Mutant is defective in meiosis and produces abnormal microspores. Encodes a BRCT-domain-containing protein that could be specific to the meiotic cell cycle and that plays a crucial role in some DNA repair events independent of SPO11 DSB recombination repair.	transcription coactivator;(source:Araport11)
AT1G78840.2	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G06267.1	small_nucleolar_rna			None;(source:Araport11)
AT3G07960.4	protein_coding		Encodes phosphatidylinositol-4-phosphate 5-kinase 6 (PIP5K6).  Regulates clathrin-dependent endocytosis in pollen tubes.	Phosphatidylinositol-4-phosphate 5-kinase family protein;(source:Araport11)
AT5G16520.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G11160.2	protein_coding			adenine phosphoribosyltransferase 5;(source:Araport11)
AT2G19110.3	protein_coding		Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and  Cd resistance, suggesting a role in Zn and Cd transport.The mRNA is cell-to-cell mobile.	heavy metal atpase 4;(source:Araport11)
AT2G19110.2	protein_coding		Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and  Cd resistance, suggesting a role in Zn and Cd transport.The mRNA is cell-to-cell mobile.	heavy metal atpase 4;(source:Araport11)
AT1G65800.2	protein_coding		Encodes a putative receptor-like serine/threonine protein kinases that is similar to brassica self-incompatibility (S) locus. expressed in specifically in cotyledons, leaves, and sepals, in correlation with the maturation of these structures. Together with AtPUB9, it is required for auxin-mediated lateral root development under phosphate-starved conditions.The mRNA is cell-to-cell mobile.	receptor kinase 2;(source:Araport11)
AT5G00365.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00365.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00365.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G02805.1	long_noncoding_rna			None;(source:Araport11)
AT3G04965.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G25910;(source:Araport11)
AT4G35380.2	protein_coding		Encodes one of the functionally redundant ARF guanine-nucleotide exchange factors (ARF-GEFs). Functions as regulators of post-Golgi trafficking.	SEC7-like guanine nucleotide exchange family protein;(source:Araport11)
AT5G16540.4	protein_coding		Encodes a zinc finger protein.	zinc finger nuclease 3;(source:Araport11)
AT5G04110.4	protein_coding			DNA GYRASE B3;(source:Araport11)
AT5G04110.2	protein_coding			DNA GYRASE B3;(source:Araport11)
AT5G04110.3	protein_coding			DNA GYRASE B3;(source:Araport11)
AT2G18600.2	protein_coding			Ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT2G40470.2	protein_coding		LOB-domain containing protein. Involved in regulation of xylem differentiation- acts as a regulator of VND7 which is a master regulator of xylem cell differentiation.	LOB domain-containing protein 15;(source:Araport11)
AT5G01325.1	long_noncoding_rna			None;(source:Araport11)
AT1G62200.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G08800.2	protein_coding		Encodes a nuclear and endosome localized protein with ARM and HEAT domains that interacts with SHR and other non-cell-autonomous proteins and may be involved in their intercellular movement.  Hypomorphic mutant phenotypes suggest involvement of the protein in root patterning.	ARM repeat superfamily protein;(source:Araport11)
AT3G08800.3	protein_coding		Encodes a nuclear and endosome localized protein with ARM and HEAT domains that interacts with SHR and other non-cell-autonomous proteins and may be involved in their intercellular movement.  Hypomorphic mutant phenotypes suggest involvement of the protein in root patterning.	ARM repeat superfamily protein;(source:Araport11)
AT4G06015.1	small_nucleolar_rna			None;(source:Araport11)
AT4G02020.3	protein_coding		encodes a polycomb group protein EZA1.  Also known as SWINGER (SWN).  Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF).  The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA  in controlling seed initiation by helping to suppress central cell  nucleusendosperm proliferation within the FG.	SET domain-containing protein;(source:Araport11)
AT4G02020.2	protein_coding		encodes a polycomb group protein EZA1.  Also known as SWINGER (SWN).  Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF).  The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA  in controlling seed initiation by helping to suppress central cell  nucleusendosperm proliferation within the FG.	SET domain-containing protein;(source:Araport11)
AT1G07623.1	long_noncoding_rna			None;(source:Araport11)
AT5G00610.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G35460.2	protein_coding			membrane protein;(source:Araport11)
AT1G07703.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G50940;(source:Araport11)
AT1G15490.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G43837.1	protein_coding			reverse transcriptase-like protein;(source:Araport11)
AT1G14970.3	protein_coding			O-fucosyltransferase family protein;(source:Araport11)
AT3G54930.2	protein_coding			Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT4G21310.2	protein_coding		DUF1218 family member.	transmembrane protein, putative (DUF1218);(source:Araport11)
AT3G53540.2	protein_coding			afadin;(source:Araport11)
AT4G05720.1	long_noncoding_rna			None;(source:Araport11)
AT5G17530.4	protein_coding			phosphoglucosamine mutase family protein;(source:Araport11)
AT5G22760.2	protein_coding			PHD finger family protein;(source:Araport11)
AT1G05230.8	protein_coding		Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes.  The mutations do not affect trichome growth or branch number.	homeodomain GLABROUS 2;(source:Araport11)
AT3G60920.2	protein_coding			beige/BEACH domain protein;(source:Araport11)
AT4G07115.1	long_noncoding_rna			None;(source:Araport11)
AT2G04755.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G04280;(source:Araport11)
AT1G03080.3	protein_coding			kinase interacting (KIP1-like) family protein;(source:Araport11)
AT2G23890.3	protein_coding			HAD-superfamily hydrolase, subfamily IG, 5-nucleotidase;(source:Araport11)
AT3G05205.1	long_noncoding_rna			None;(source:Araport11)
AT1G11000.2	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT1G11000.3	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT2G04835.1	long_noncoding_rna			None;(source:Araport11)
AT3G05995.1	long_noncoding_rna			None;(source:Araport11)
AT1G09400.2	protein_coding			FMN-linked oxidoreductases superfamily protein;(source:Araport11)
AT4G30710.4	protein_coding			QWRF motif protein (DUF566);(source:Araport11)
AT4G30710.3	protein_coding			QWRF motif protein (DUF566);(source:Araport11)
AT5G17530.5	protein_coding			phosphoglucosamine mutase family protein;(source:Araport11)
AT1G18900.4	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G20070.2	protein_coding		The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in  purine turnover in Arabidopsis.The mRNA is cell-to-cell mobile.	allantoate amidohydrolase;(source:Araport11)
AT1G11160.3	protein_coding		One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G11160.2	protein_coding		One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G09610.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G45380;(source:Araport11)
AT1G11160.4	protein_coding		One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G06075.1	miRNA_primary_transcript			microRNA ath-MIR5026 precursor;(source:Araport11)
AT4G05245.1	long_noncoding_rna			None;(source:Araport11)
AT2G42455.1	protein_coding			MATH domain/coiled-coil protein;(source:Araport11)
AT1G66020.2	protein_coding			Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT2G03780.3	protein_coding			Translin family protein;(source:Araport11)
AT5G61440.2	protein_coding		Encodes a member of the thioredoxin family protein.  Located in the chloroplast.The mRNA is cell-to-cell mobile.	atypical CYS HIS rich thioredoxin 5;(source:Araport11)
AT5G49990.4	protein_coding			Xanthine/uracil permease family protein;(source:Araport11)
AT1G63680.2	protein_coding		Encodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis.  Localized to plastids.  AtMurE is involved in chloroplast biogenesis.	ALBINO OR PALE-GREEN 13;(source:Araport11)
AT5G27093.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G05963.1	long_noncoding_rna			None;(source:Araport11)
AT5G49990.2	protein_coding			Xanthine/uracil permease family protein;(source:Araport11)
AT1G08553.1	long_noncoding_rna			None;(source:Araport11)
AT5G51630.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G15685.1	protein_coding			mutator transposase MUDRA protein;(source:Araport11)
AT5G03553.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G23080.3	protein_coding			Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT2G06535.1	long_noncoding_rna			None;(source:Araport11)
AT4G11810.2	protein_coding		Encodes an SPX domain protein that transports Pi into the vacuole. Overexpression of PHT5:2 leads to massive Pi sequestration into vacuoles and altered regulation of Pi starvation-responsive genes.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT4G11810.3	protein_coding		Encodes an SPX domain protein that transports Pi into the vacuole. Overexpression of PHT5:2 leads to massive Pi sequestration into vacuoles and altered regulation of Pi starvation-responsive genes.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT4G08400.2	protein_coding			Proline-rich extensin-like family protein;(source:Araport11)
AT1G08975.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G24280.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G45140.2	protein_coding		Encodes a subunit of RNA polymerase III (aka RNA polymerase C).	nuclear RNA polymerase C2;(source:Araport11)
AT5G08570.3	protein_coding			Pyruvate kinase family protein;(source:Araport11)
AT5G08850.1	small_nucleolar_rna			None;(source:Araport11)
AT2G40930.2	protein_coding		Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation.	ubiquitin-specific protease 5;(source:Araport11)
AT2G04965.1	small_nucleolar_rna			None;(source:Araport11)
AT2G05155.1	long_noncoding_rna			None;(source:Araport11)
AT5G40910.9	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G40910.6	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G28240.2	protein_coding			ATP-dependent helicase family protein;(source:Araport11)
AT4G05715.1	long_noncoding_rna			None;(source:Araport11)
AT5G60980.4	protein_coding			Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT5G40910.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G40910.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G04683.1	long_noncoding_rna			None;(source:Araport11)
AT3G01715.1	small_nuclear_rna			U1;(source:Araport11)
AT2G46920.4	protein_coding		Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal.  Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.	Protein phosphatase 2C family protein;(source:Araport11)
AT3G54590.2	protein_coding		Encodes a hydroxyproline-rich glycoprotein.The mRNA is cell-to-cell mobile.	hydroxyproline-rich glycoprotein;(source:Araport11)
AT5G08830.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G58320;(source:Araport11)
AT2G46920.3	protein_coding		Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal.  Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.	Protein phosphatase 2C family protein;(source:Araport11)
AT1G09810.2	protein_coding			evolutionarily conserved C-terminal region 11;(source:Araport11)
AT1G09810.3	protein_coding			evolutionarily conserved C-terminal region 11;(source:Araport11)
AT4G05170.6	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G05170.7	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G07723.1	long_noncoding_rna			None;(source:Araport11)
AT4G05170.5	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G05170.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G05170.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G04880.2	protein_coding		Encodes an N6-mAMP deaminase (ADAL, renamed MAPDA) that catabolizes N6-mAMP derived from turnover of m6A-modified RNA to inosine monophosphate in vivo by hydrolytically removing the aminomethyl group.	adenosine/AMP deaminase family protein;(source:Araport11)
AT5G62090.3	protein_coding		Encodes a protein that functions with LUH to promote Al binding to the root cell wall.	SEUSS-like 2;(source:Araport11)
AT3G09265.1	long_noncoding_rna			None;(source:Araport11)
AT5G40930.2	protein_coding		Form of TOM20, which is a component of the TOM complex  involved in transport of nuclear-encoded mitochondrial proteins	translocase of outer membrane 20-4;(source:Araport11)
AT4G09065.1	long_noncoding_rna			None;(source:Araport11)
AT5G01875.1	long_noncoding_rna			None;(source:Araport11)
AT5G67180.3	protein_coding			target of early activation tagged (EAT) 3;(source:Araport11)
AT5G67340.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT1G09037.1	long_noncoding_rna			None;(source:Araport11)
AT4G09265.1	long_noncoding_rna			None;(source:Araport11)
AT5G27840.3	protein_coding		Encodes a Type One Protein Phosphatase that acts as a nucleocytoplasmic negative regulator of tip growth. Mutants affect pollen germination, pollen tube growth, and root hair growth. It acts genetically downstream of ANX1 (AT3G04690) and ANX2 (AT5G28680) and is functionally redundant with ATUNIS1/TOPP9 (AT3G05580).	Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT4G28880.3	protein_coding		Member of CKL gene family (CKL-A group)	casein kinase I-like 3;(source:Araport11)
AT5G24670.3	protein_coding		A protein coding gene with unknown function.  The 5?UTR of this gene overlaps with a RNA coding gene TER2.  TER2 (GenBank accession no. HQ401285) encodes a putative template sequence corresponding to 1.5 copies of the Arabidopsis telomere repeat (PNAS 2011, 108:73-78). Natural epiallele in Nok-1, transmission of the epiallele over generations depends only on the selfreinforcing loop between CHROMOMETHYLASE 3 and KRYPTONITE, involving DNA methylated in the CHG context and histone H3 lysine 9 methylation.	Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT5G24670.5	protein_coding		A protein coding gene with unknown function.  The 5?UTR of this gene overlaps with a RNA coding gene TER2.  TER2 (GenBank accession no. HQ401285) encodes a putative template sequence corresponding to 1.5 copies of the Arabidopsis telomere repeat (PNAS 2011, 108:73-78). Natural epiallele in Nok-1, transmission of the epiallele over generations depends only on the selfreinforcing loop between CHROMOMETHYLASE 3 and KRYPTONITE, involving DNA methylated in the CHG context and histone H3 lysine 9 methylation.	Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT5G24670.4	protein_coding		A protein coding gene with unknown function.  The 5?UTR of this gene overlaps with a RNA coding gene TER2.  TER2 (GenBank accession no. HQ401285) encodes a putative template sequence corresponding to 1.5 copies of the Arabidopsis telomere repeat (PNAS 2011, 108:73-78). Natural epiallele in Nok-1, transmission of the epiallele over generations depends only on the selfreinforcing loop between CHROMOMETHYLASE 3 and KRYPTONITE, involving DNA methylated in the CHG context and histone H3 lysine 9 methylation.	Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT5G27840.4	protein_coding		Encodes a Type One Protein Phosphatase that acts as a nucleocytoplasmic negative regulator of tip growth. Mutants affect pollen germination, pollen tube growth, and root hair growth. It acts genetically downstream of ANX1 (AT3G04690) and ANX2 (AT5G28680) and is functionally redundant with ATUNIS1/TOPP9 (AT3G05580).	Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT3G03165.1	long_noncoding_rna			None;(source:Araport11)
AT3G56320.5	protein_coding			PAP/OAS1 substrate-binding domain superfamily;(source:Araport11)
AT3G56320.6	protein_coding			PAP/OAS1 substrate-binding domain superfamily;(source:Araport11)
AT3G56320.7	protein_coding			PAP/OAS1 substrate-binding domain superfamily;(source:Araport11)
AT3G06075.1	long_noncoding_rna			None;(source:Araport11)
AT3G56320.2	protein_coding			PAP/OAS1 substrate-binding domain superfamily;(source:Araport11)
AT3G56320.3	protein_coding			PAP/OAS1 substrate-binding domain superfamily;(source:Araport11)
AT1G52000.2	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT5G46085.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G55120.uORF2	uORF			Derives_from AT5G55120;(source:Araport11)
AT5G67100.2	protein_coding		Encodes the putative catalytic subunit of the DNA polymerase alpha.  Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.	DNA-directed DNA polymerase;(source:Araport11)
AT3G08595.1	long_noncoding_rna			None;(source:Araport11)
AT2G04875.1	long_noncoding_rna			None;(source:Araport11)
AT1G60960.3	protein_coding		Encodes a plasma membrane localized zinc/iron transporter.	iron regulated transporter 3;(source:Araport11)
AT1G60960.2	protein_coding		Encodes a plasma membrane localized zinc/iron transporter.	iron regulated transporter 3;(source:Araport11)
AT5G61700.2	protein_coding			ABC2 homolog 16;(source:Araport11)
AT5G61700.3	protein_coding			ABC2 homolog 16;(source:Araport11)
AT2G01130.2	protein_coding			DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT3G56710.2	protein_coding		Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.	sigma factor binding protein 1;(source:Araport11)
AT1G08263.1	long_noncoding_rna			None;(source:Araport11)
AT2G21260.2	protein_coding			NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G47740.3	protein_coding			PPPDE putative thiol peptidase family protein;(source:Araport11)
AT3G56730.3	protein_coding			Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G14205.2	protein_coding			Phosphoinositide phosphatase family protein;(source:Araport11)
AT3G15690.3	protein_coding			Single hybrid motif superfamily protein;(source:Araport11)
AT5G22420.5	protein_coding			fatty acid reductase 7;(source:Araport11)
AT5G22420.2	protein_coding			fatty acid reductase 7;(source:Araport11)
AT3G56730.6	protein_coding			Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT3G56730.5	protein_coding			Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT1G04693.1	long_noncoding_rna			None;(source:Araport11)
AT1G05790.3	protein_coding			lipase class 3 family protein;(source:Araport11)
AT4G15215.2	protein_coding			pleiotropic drug resistance 13;(source:Araport11)
AT1G04603.1	long_noncoding_rna			None;(source:Araport11)
AT4G15215.7	protein_coding			pleiotropic drug resistance 13;(source:Araport11)
AT4G15215.6	protein_coding			pleiotropic drug resistance 13;(source:Araport11)
AT4G15215.5	protein_coding			pleiotropic drug resistance 13;(source:Araport11)
AT2G13845.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G48840.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G31680.2	protein_coding			Transcriptional factor B3 family protein;(source:Araport11)
AT5G09695.1	long_noncoding_rna			None;(source:Araport11)
AT4G15215.8	protein_coding			pleiotropic drug resistance 13;(source:Araport11)
AT2G41520.3	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Heat shock protein DnaJ with tetratricopeptide repeat-containing protein;(source:Araport11)
AT1G08713.1	long_noncoding_rna			None;(source:Araport11)
AT1G30330.uORF1	uORF			Derives_from AT1G30330;(source:Araport11)
AT3G16120.2	protein_coding			Dynein light chain type 1 family protein;(source:Araport11)
AT1G30330.uORF3	uORF			Derives_from AT1G30330;(source:Araport11)
AT1G30330.uORF2	uORF			Derives_from AT1G30330;(source:Araport11)
AT1G30330.uORF5	uORF			Derives_from AT1G30330;(source:Araport11)
AT1G30330.uORF4	uORF			Derives_from AT1G30330;(source:Araport11)
AT2G39435.6	protein_coding			Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT1G26590.4	protein_coding			C2H2-like zinc finger protein;(source:Araport11)
AT1G26590.2	protein_coding			C2H2-like zinc finger protein;(source:Araport11)
AT1G26590.3	protein_coding			C2H2-like zinc finger protein;(source:Araport11)
AT1G08350.4	protein_coding			Endomembrane protein 70 protein family;(source:Araport11)
AT2G41540.4	protein_coding		Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene.	6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT3G45540.2	protein_coding			RING/U-box protein with C6HC-type zinc finger;(source:Araport11)
AT3G48860.3	protein_coding			coiled-coil protein;(source:Araport11)
AT5G63450.2	protein_coding			cytochrome P450, family 94, subfamily B, polypeptide 1;(source:Araport11)
AT3G11880.2	protein_coding			transmembrane protein, putative (Protein of unknown function DUF2359, transmembrane);(source:Araport11)
AT1G08350.3	protein_coding			Endomembrane protein 70 protein family;(source:Araport11)
AT1G09515.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G18640.2	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G19700.5	protein_coding		Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.	BEL1-like homeodomain 10;(source:Araport11)
AT1G19700.4	protein_coding		Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.	BEL1-like homeodomain 10;(source:Araport11)
AT1G04130.2	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808).  Interacts with Hsp90/Hsp70 as co-chaperone.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G43970.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G23090.2	protein_coding		Encodes AST91 mRNA for sulfate transporter.	sulfate transporter 91;(source:Araport11)
AT1G23090.3	protein_coding		Encodes AST91 mRNA for sulfate transporter.	sulfate transporter 91;(source:Araport11)
AT1G23150.uORF1	uORF			Derives_from AT1G23150;(source:Araport11)
AT2G20470.2	protein_coding			AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT2G20470.3	protein_coding			AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT4G09975.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G39970;(source:Araport11)
AT5G56850.6	protein_coding			hypothetical protein;(source:Araport11)
AT2G07175.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G19340;(source:Araport11)
AT4G04030.2	protein_coding			transcription repressor;(source:Araport11)
AT5G60410.6	protein_coding		Encodes  a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis.  Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation.  signaling	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein;(source:Araport11)
AT2G43720.2	protein_coding			FAM136A-like protein (DUF842);(source:Araport11)
AT5G44567.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G05110.2	protein_coding			equilibrative nucleoside transporter 6;(source:Araport11)
AT4G05110.3	protein_coding			equilibrative nucleoside transporter 6;(source:Araport11)
AT5G48890.2	protein_coding		Encodes a C(2) H(2) -type zinc-finger transcriptional regulator and is expressed in the leaf vasculature and the vegetative shoot apical meristem and controls the transition to flowering.	C2H2-like zinc finger protein;(source:Araport11)
AT2G05485.1	long_noncoding_rna			None;(source:Araport11)
AT4G09855.1	long_noncoding_rna			None;(source:Araport11)
AT1G08317.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G60420;(source:Araport11)
AT2G38460.3	protein_coding		Encodes IRON REGULATED1 (IREG1/FPN1), one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.	iron regulated 1;(source:Araport11)
AT3G03900.2	protein_coding		Provides activated sulfate for the  sulfation of secondary metabolites, including the glucosinolates. Redundant with APK4.	adenosine-5-phosphosulfate (APS) kinase 3;(source:Araport11)
AT3G03900.3	protein_coding		Provides activated sulfate for the  sulfation of secondary metabolites, including the glucosinolates. Redundant with APK4.	adenosine-5-phosphosulfate (APS) kinase 3;(source:Araport11)
AT4G03055.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09907.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G79700;(source:Araport11)
AT1G77270.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G21570.2	protein_coding			organic solute transporter ostalpha protein (DUF300);(source:Araport11)
AT2G32760.3	protein_coding		Homolog of yeast VPS38P. Interacts with PI3K.Mutants have defects in late endosome morphology and  retromer function.	UV radiation resistance-associated protein;(source:Araport11)
AT1G63020.4	protein_coding		Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase IV; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for posttranscriptional gene silencing.	nuclear RNA polymerase D1A;(source:Araport11)
AT1G15050.2	protein_coding		Belongs to auxin inducible gene family.	indole-3-acetic acid inducible 34;(source:Araport11)
AT1G63020.3	protein_coding		Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase IV; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for posttranscriptional gene silencing.	nuclear RNA polymerase D1A;(source:Araport11)
AT4G28410.2	protein_coding			Tyrosine transaminase family protein;(source:Araport11)
AT1G08183.1	long_noncoding_rna			None;(source:Araport11)
AT4G14620.uORF1	uORF			Derives_from AT4G14620;(source:Araport11)
AT1G11100.3	protein_coding			SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT3G28580.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G20290.2	protein_coding		member of Myosin-like proteins	myosin-like protein XIG;(source:Araport11)
AT1G11100.5	protein_coding			SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT1G11100.4	protein_coding			SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT2G44140.4	protein_coding			Peptidase family C54 protein;(source:Araport11)
AT5G11580.2	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT2G20290.3	protein_coding		member of Myosin-like proteins	myosin-like protein XIG;(source:Araport11)
AT2G09255.1	long_noncoding_rna			None;(source:Araport11)
AT4G03115.4	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G05930.3	protein_coding			guanylyl cyclase 1;(source:Araport11)
AT5G07205.1	long_noncoding_rna			None;(source:Araport11)
AT1G45332.2	protein_coding			Translation elongation factor EFG/EF2 protein;(source:Araport11)
AT5G58840.3	protein_coding			Subtilase family protein;(source:Araport11)
AT5G07995.1	long_noncoding_rna			None;(source:Araport11)
AT5G65980.2	protein_coding			Auxin efflux carrier family protein;(source:Araport11)
AT5G26780.4	protein_coding		Encodes a protein with serine hydroxymethyltransferase activity which is thought to be localized in the mitochondrial matrix. SHM2 expression fails to rescue the conditional lethal phenotype of the shm1-1 mutant, defective in SHM1.	serine hydroxymethyltransferase 2;(source:Araport11)
AT5G49645.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G07265.1	small_nuclear_rna			U6;(source:Araport11)
AT1G29715.4	pseudogene			pseudogene of Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT3G09305.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G59970;(source:Araport11)
AT5G20710.2	protein_coding			beta-galactosidase 7;(source:Araport11)
AT2G04435.1	long_noncoding_rna			None;(source:Araport11)
AT1G29715.2	pseudogene			pseudogene of Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G29715.3	pseudogene			pseudogene of Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G14630.2	protein_coding			XRI1-like protein;(source:Araport11)
AT5G63375.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G02755.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G17630;(source:Araport11)
AT2G24195.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G02535.1	antisense_rna			Natural antisense transcript overlaps with AT5G16450;(source:Araport11)
AT2G24195.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G30424.2	protein_coding		In a tandem repeat with AT2g30432 (TCL1) and AT2g30420 (ETC2), it encodes a single-repeat R3 MYB transcription factor that is involved in the negative regulation of trichome formation.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G53500.3	protein_coding		Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT5G49290.8	protein_coding			receptor like protein 56;(source:Araport11)
AT5G49290.9	protein_coding			receptor like protein 56;(source:Araport11)
AT2G47850.4	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT3G09325.1	long_noncoding_rna			None;(source:Araport11)
AT1G08307.1	long_noncoding_rna			None;(source:Araport11)
AT2G16790.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G23450.4	protein_coding		Encodes a sphingosine kinase that specifically phosphorylates D-erythro-dihydrosphingosine (DHS), but not N-acetyl-DHS or D-threo-DHS. It also also phosphorylates D-erythro-sphingosine, trans-4, trans-8-sphingadienine and phytosphingosine.	long-chain base (LCB) kinase 1;(source:Araport11)
AT5G23450.5	protein_coding		Encodes a sphingosine kinase that specifically phosphorylates D-erythro-dihydrosphingosine (DHS), but not N-acetyl-DHS or D-threo-DHS. It also also phosphorylates D-erythro-sphingosine, trans-4, trans-8-sphingadienine and phytosphingosine.	long-chain base (LCB) kinase 1;(source:Araport11)
AT4G35760.2	protein_coding		Encodes a bimodular enzyme comprising an integral domain homologous to the catalytic subunit of mammalian vitamin K epoxide reductase (VKORC1, EC 1.1.4.1) that is fused to a soluble thioredoxin-like moiety. Using yeast microsomes as a recombinant system, it was shown that the VKORC1 domain of At4g35760 functions as a stringent naphthoquinone reductase, and that its reduced Trx-like partner can serve as its electron donor.  Located in plastid. Required for the assembly of photosystem II. Can catalyze disulfide bond formation in vitro.	NAD(P)H dehydrogenase (quinone)s;(source:Araport11)
AT5G49290.5	protein_coding			receptor like protein 56;(source:Araport11)
AT1G07853.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G53100;(source:Araport11)
AT3G01625.1	long_noncoding_rna			None;(source:Araport11)
AT3G11720.4	protein_coding			Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT3G10527.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G06925.1	long_noncoding_rna			None;(source:Araport11)
AT5G00625.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G05190.3	protein_coding			D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT3G05190.2	protein_coding			D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT3G54780.4	protein_coding			Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT5G22820.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT5G45780.2	protein_coding		Encodes one of a group of LRR-RLKs, designated as CLAVATA3 INSENSITIVE RECEPTOR KINASES (CIKs), that act as co-receptors and have essential roles in regulating CLV3-mediated stem cell homeostasis.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G29535.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G46320.5	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G03490.5	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT2G38260.3	pseudogene		Probably not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit;(source:Araport11)
AT5G62380.2	protein_coding		Encodes a NAC-domain transcription factor involved in xylem formation. Induces transdifferentiation of various cells into metaxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.	NAC-domain protein 101;(source:Araport11)
AT1G09170.7	protein_coding			P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT1G09170.6	protein_coding			P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT1G09170.5	protein_coding			P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT1G09170.4	protein_coding			P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT1G09170.3	protein_coding			P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT1G09170.2	protein_coding			P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT5G46450.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G46450.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G03850.3	protein_coding		Encodes glutaredoxin ATGRXS13, required to facilitate Botrytis cinerea infection of Arabidopsis thaliana plants. Sylvain La Camera et al (2011, PMID:21756272) reported a third splice variant in addition to the two annotated in TAIR10. It is a member of the CC-type glutaredoxin (ROXY) family that has been shown to interact with the transcription factor TGA2 and suppress ORA59 promoter activity.	Glutaredoxin family protein;(source:Araport11)
AT1G49340.3	protein_coding		Encodes a phosphatidylinositol 4-kinase that is expressed in inflorescences and shoots.	Phosphatidylinositol 3- and 4-kinase family protein;(source:Araport11)
AT1G49340.4	protein_coding		Encodes a phosphatidylinositol 4-kinase that is expressed in inflorescences and shoots.	Phosphatidylinositol 3- and 4-kinase family protein;(source:Araport11)
AT1G09170.8	protein_coding			P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT5G00610.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G03715.1	long_noncoding_rna			None;(source:Araport11)
AT1G71015.2	protein_coding			plastid movement impaired protein;(source:Araport11)
AT1G09053.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G69270;(source:Araport11)
AT3G24255.5	protein_coding			RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT2G36690.2	protein_coding		Protein belonging to the Fe-dependent 2-oxoglutarate dioxygenase superfamily, catalyzes the stereospecific hydration of GA12 to produce DHGA12, negatively regulates ABA sensitivity during germination, phototrophic establishment and seedling development.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G07705.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT3G24255.6	protein_coding			RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT4G09475.1	small_nucleolar_rna			None;(source:Araport11)
AT3G26670.4	protein_coding			magnesium transporter, putative (DUF803);(source:Araport11)
AT2G27950.3	protein_coding			Ring/U-Box superfamily protein;(source:Araport11)
AT5G67240.4	protein_coding			small RNA degrading nuclease 3;(source:Araport11)
AT3G24840.2	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT3G24840.3	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT3G24840.4	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT3G24840.5	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G25320.2	protein_coding			ACT-like superfamily protein;(source:Araport11)
AT3G24840.7	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G53040.4	protein_coding			tRNA (met) cytidine acetyltransferase, putative (DUF616);(source:Araport11)
AT1G53040.5	protein_coding			tRNA (met) cytidine acetyltransferase, putative (DUF616);(source:Araport11)
AT1G53040.6	protein_coding			tRNA (met) cytidine acetyltransferase, putative (DUF616);(source:Araport11)
AT3G08105.1	long_noncoding_rna			None;(source:Araport11)
AT2G36670.4	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G29030.2	protein_coding			Apoptosis inhibitory protein 5 (API5);(source:Araport11)
AT1G53040.3	protein_coding			tRNA (met) cytidine acetyltransferase, putative (DUF616);(source:Araport11)
AT1G08397.1	long_noncoding_rna			None;(source:Araport11)
AT3G62615.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G02010.5	protein_coding		member of KEULE Gene Family	secretory 1A;(source:Araport11)
AT1G02010.4	protein_coding		member of KEULE Gene Family	secretory 1A;(source:Araport11)
AT1G02010.6	protein_coding		member of KEULE Gene Family	secretory 1A;(source:Araport11)
AT5G01165.1	small_nucleolar_rna			None;(source:Araport11)
AT4G04365.1	miRNA_primary_transcript			microRNA ath-MIR826b precursor;(source:Araport11)
AT4G03755.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G00760;(source:Araport11)
AT5G24970.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G55090.2	protein_coding		member of MEKK subfamily	mitogen-activated protein kinase kinase kinase 15;(source:Araport11)
AT4G09680.4	protein_coding		Encodes CTC1 (Conserved Telomere Maintenance Component 1) involved in telomere maintenance.	conserved telomere maintenance component 1;(source:Araport11)
AT4G09680.3	protein_coding		Encodes CTC1 (Conserved Telomere Maintenance Component 1) involved in telomere maintenance.	conserved telomere maintenance component 1;(source:Araport11)
AT2G07335.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G20720;(source:Araport11)
AT1G05603.1	long_noncoding_rna			None;(source:Araport11)
AT5G53850.6	protein_coding		Encodes a trifunctional dehydratase / enolase / phosphatase involved in the methionine salvage.	haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT5G53850.5	protein_coding		Encodes a trifunctional dehydratase / enolase / phosphatase involved in the methionine salvage.	haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT5G53850.4	protein_coding		Encodes a trifunctional dehydratase / enolase / phosphatase involved in the methionine salvage.	haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT4G38775.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G06275.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT2G34450.3	protein_coding			HMG-box (high mobility group) DNA-binding family protein;(source:Araport11)
AT5G18310.4	protein_coding			ubiquitin hydrolase;(source:Araport11)
AT3G12810.2	protein_coding		Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).The mRNA is cell-to-cell mobile.	SNF2 domain-containing protein / helicase domain-containing protein;(source:Araport11)
AT1G22910.4	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G42655.2	protein_coding			Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT1G61810.4	protein_coding			beta-glucosidase 45;(source:Araport11)
AT2G01275.3	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G12840.5	protein_coding		Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	nuclear factor Y, subunit A1;(source:Araport11)
AT5G35930.3	protein_coding			AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT5G35930.4	protein_coding			AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT2G01275.4	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G01275.5	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G48090.3	protein_coding			calcium-dependent lipid-binding family protein;(source:Araport11)
AT1G48090.2	protein_coding			calcium-dependent lipid-binding family protein;(source:Araport11)
AT1G05347.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17860;(source:Araport11)
AT3G19990.2	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT2G00990.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G48090.6	protein_coding			calcium-dependent lipid-binding family protein;(source:Araport11)
AT1G48090.5	protein_coding			calcium-dependent lipid-binding family protein;(source:Araport11)
AT1G48090.4	protein_coding			calcium-dependent lipid-binding family protein;(source:Araport11)
AT5G44063.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G21300.4	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT5G00940.1	long_noncoding_rna			None;(source:Araport11)
AT2G17470.2	protein_coding		Encodes ALMT6, a member of the aluminum-activated malate transporter family.	aluminum activated malate transporter family protein;(source:Araport11)
AT2G21300.3	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT5G15950.uORF1	uORF			Derives_from AT5G15950;(source:Araport11)
AT2G08285.1	long_noncoding_rna			None;(source:Araport11)
AT1G34060.2	protein_coding			Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT1G80790.2	protein_coding		Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).The mRNA is cell-to-cell mobile.	XH/XS domain-containing protein;(source:Araport11)
AT2G22190.2	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT4G07875.1	small_nuclear_rna			U6;(source:Araport11)
AT3G05485.1	long_noncoding_rna			None;(source:Araport11)
AT1G04223.1	small_nucleolar_rna			None;(source:Araport11)
AT2G43210.3	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT2G08025.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G24360;(source:Araport11)
AT5G17880.2	protein_coding		Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development.  csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal).  csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae.	disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT2G22750.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G01885.1	long_noncoding_rna			None;(source:Araport11)
AT2G08940.1	long_noncoding_rna			None;(source:Araport11)
AT2G04270.8	protein_coding		Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.	RNAse E/G-like protein;(source:Araport11)
AT2G04270.9	protein_coding		Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.	RNAse E/G-like protein;(source:Araport11)
AT3G57470.5	protein_coding			Insulinase (Peptidase family M16) family protein;(source:Araport11)
AT5G10100.3	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G10100.4	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT4G01650.3	protein_coding			Polyketide cyclase / dehydrase and lipid transport protein;(source:Araport11)
AT1G69587.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G69588;(source:Araport11)
AT1G69587.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G69588;(source:Araport11)
AT1G17680.3	protein_coding			tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT2G04270.6	protein_coding		Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.	RNAse E/G-like protein;(source:Araport11)
AT2G04270.7	protein_coding		Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.	RNAse E/G-like protein;(source:Araport11)
AT4G08185.1	long_noncoding_rna			None;(source:Araport11)
AT3G09455.2	protein_coding			dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit;(source:Araport11)
AT3G09455.1	protein_coding			dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit;(source:Araport11)
AT4G02795.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G27620.3	protein_coding		core cell cycle genesThe mRNA is cell-to-cell mobile.	cyclin H;(source:Araport11)
AT4G02795.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G07565.1	long_noncoding_rna			None;(source:Araport11)
AT5G46690.2	protein_coding			beta HLH protein 71;(source:Araport11)
AT5G61850.2	protein_coding		Encodes transcriptional regulator that promotes the transition to flowering.Involved in floral meristem development. LFY is involved in the regulation of AP3 expression, and appears to bring the F-box protein UFO to the AP3 promoter.  Amino acids 46-120 define a protein domain that mediates self-interaction.	floral meristem identity control protein LEAFY (LFY);(source:Araport11)
AT4G12430.uORF1	uORF			Derives_from AT4G12430;(source:Araport11)
AT5G04965.1	miRNA_primary_transcript			microRNA ath-MIR854d precursor;(source:Araport11)
AT1G09480.2	protein_coding		similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenaseThe mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G05357.1	long_noncoding_rna			None;(source:Araport11)
AT2G05825.1	long_noncoding_rna			None;(source:Araport11)
AT1G66450.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G38450.2	protein_coding			cytochrome P450, family 735, subfamily A, polypeptide 1;(source:Araport11)
AT2G09315.1	long_noncoding_rna			None;(source:Araport11)
AT4G02775.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G09295.1	long_noncoding_rna			None;(source:Araport11)
AT5G07545.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G06590.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G28980.3	protein_coding		Encodes a CDK-activating kinase that regulates root initial cell differentiation.  Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription.	CDK-activating kinase 1AT;(source:Araport11)
AT5G59980.3	protein_coding		Encodes a predicted protein subunit of RNases P/MRP that plays a role in female gametophyte development and male competence.	Polymerase/histidinol phosphatase-like protein;(source:Araport11)
AT5G11080.3	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT2G04485.1	long_noncoding_rna			None;(source:Araport11)
AT5G59980.4	protein_coding		Encodes a predicted protein subunit of RNases P/MRP that plays a role in female gametophyte development and male competence.	Polymerase/histidinol phosphatase-like protein;(source:Araport11)
AT1G08917.1	novel_transcribed_region			novel transcribed region; detected in root apical meristem, receptacle;(source:Araport11)
AT3G02295.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G10220;(source:Araport11)
AT1G71528.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G71530;(source:Araport11)
AT2G44480.3	protein_coding			beta glucosidase 17;(source:Araport11)
AT4G37560.2	protein_coding			Acetamidase/Formamidase family protein;(source:Araport11)
AT2G44480.5	protein_coding			beta glucosidase 17;(source:Araport11)
AT2G44480.4	protein_coding			beta glucosidase 17;(source:Araport11)
AT1G30814.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G70430.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G07697.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G50910;(source:Araport11)
AT3G55200.2	protein_coding		Encodes a spliceosomal protein that is required for proper reproduction.  RNAi lines display low pollen viability,caused by a defect in the transition from microspore to bicellular stage during pollen development.	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein;(source:Araport11)
AT3G55200.3	protein_coding		Encodes a spliceosomal protein that is required for proper reproduction.  RNAi lines display low pollen viability,caused by a defect in the transition from microspore to bicellular stage during pollen development.	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein;(source:Araport11)
AT1G08887.1	long_noncoding_rna			None;(source:Araport11)
AT1G70430.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G04523.1	long_noncoding_rna			None;(source:Araport11)
AT3G12550.5	protein_coding		Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).	XH/XS domain-containing protein;(source:Araport11)
AT3G12550.4	protein_coding		Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).	XH/XS domain-containing protein;(source:Araport11)
AT3G12550.3	protein_coding		Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).	XH/XS domain-containing protein;(source:Araport11)
AT5G57850.2	protein_coding		ADCL encodes a protein that acts as a 4-amino-4-deoxychorismate lyase. It catalyzes the production 4-aminobenzoate (pABA) production which is required for folate biosynthesis. The enzyme localizes to chloroplasts based on an import assay and GFP localization experiments.	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT3G52120.4	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein;(source:Araport11)
AT5G05265.1	long_noncoding_rna			None;(source:Araport11)
AT3G01500.4	protein_coding		Encodes a putative beta-carbonic anhydrase betaCA1.  Together with betaCA4 (At1g70410) regulates CO2-controlled stomatal movements in guard cells.	carbonic anhydrase 1;(source:Araport11)
AT1G22970.2	protein_coding			cyclin-D1-binding protein;(source:Araport11)
AT2G40810.3	protein_coding			yeast autophagy-like protein;(source:Araport11)
AT1G22970.4	protein_coding			cyclin-D1-binding protein;(source:Araport11)
AT5G06265.6	protein_coding			hyaluronan mediated motility receptor-like protein;(source:Araport11)
AT1G69935.2	protein_coding		Encodes a nuclear localized serine-arginine-aspartate-rich protein that acts as a negative regulator of photomorphogenesis.	short hypocotyl in white light1;(source:Araport11)
AT5G06265.4	protein_coding			hyaluronan mediated motility receptor-like protein;(source:Araport11)
AT3G04745.1	long_noncoding_rna			None;(source:Araport11)
AT1G67410.2	protein_coding			Exostosin family protein;(source:Araport11)
AT5G06265.8	protein_coding			hyaluronan mediated motility receptor-like protein;(source:Araport11)
AT5G06055.1	small_nuclear_rna			U6atac;(source:Araport11)
AT3G12530.4	protein_coding			PSF2;(source:Araport11)
AT3G52100.2	protein_coding			RING/FYVE/PHD-type zinc finger family protein;(source:Araport11)
AT3G52100.3	protein_coding			RING/FYVE/PHD-type zinc finger family protein;(source:Araport11)
AT3G23640.3	protein_coding			heteroglycan glucosidase 1;(source:Araport11)
AT3G01130.8	protein_coding			ATP synthase E chain;(source:Araport11)
AT3G12530.3	protein_coding			PSF2;(source:Araport11)
AT3G01130.5	protein_coding			ATP synthase E chain;(source:Araport11)
AT3G01130.4	protein_coding			ATP synthase E chain;(source:Araport11)
AT3G01130.7	protein_coding			ATP synthase E chain;(source:Araport11)
AT4G02845.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G57465.1	protein_coding			zinc-metallopeptidase, peroxisomal protein;(source:Araport11)
AT2G33370.2	protein_coding			Ribosomal protein L14p/L23e family protein;(source:Araport11)
AT3G01130.3	protein_coding			ATP synthase E chain;(source:Araport11)
AT2G09280.1	long_noncoding_rna			None;(source:Araport11)
AT3G05035.2	protein_coding			exportin-4 protein;(source:Araport11)
AT1G06103.1	long_noncoding_rna			None;(source:Araport11)
AT4G39420.4	protein_coding			spatacsin carboxy-terminus protein;(source:Araport11)
AT4G39420.3	protein_coding			spatacsin carboxy-terminus protein;(source:Araport11)
AT3G14470.2	protein_coding			NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT4G18140.5	protein_coding		Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).	SCP1-like small phosphatase 4b;(source:Araport11)
AT1G80540.3	protein_coding			envelope glycoprotein B;(source:Araport11)
AT1G80540.2	protein_coding			envelope glycoprotein B;(source:Araport11)
AT4G18140.4	protein_coding		Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).	SCP1-like small phosphatase 4b;(source:Araport11)
AT1G73840.2	protein_coding		Resembles the CstF64 family of RNA processing factors that are conserved between yeast and mammals.  In mammals, CstF64 is a component of the CstF complex which is required for mRNA 3 Primeend formation along with other factors.	hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G01225.1	long_noncoding_rna			None;(source:Araport11)
AT2G19050.2	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G00870.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G12700.2	protein_coding		Encodes RNA PROCESSING FACTOR 1 (RPF1), a pentatricopeptide repeat (PPR) protein of the P-class containing canonical PPR-repeats. RPF1 is required for the 5?-end processing of the nad4 mRNA in mitochondria. Ler and other accessions impaired in processing of the nad4 mRNA 5&#8242;-end, contain a single nucleotide polymorphism (SNP) 807 nucleotides downstream of the predicted translation start codon (G807A). The resulting premature translation termination codon abolishes the function of the RPF1 gene in Ler.	RNA processing FACTOR;(source:Araport11)
AT1G12700.3	protein_coding		Encodes RNA PROCESSING FACTOR 1 (RPF1), a pentatricopeptide repeat (PPR) protein of the P-class containing canonical PPR-repeats. RPF1 is required for the 5?-end processing of the nad4 mRNA in mitochondria. Ler and other accessions impaired in processing of the nad4 mRNA 5&#8242;-end, contain a single nucleotide polymorphism (SNP) 807 nucleotides downstream of the predicted translation start codon (G807A). The resulting premature translation termination codon abolishes the function of the RPF1 gene in Ler.	RNA processing FACTOR;(source:Araport11)
AT2G04635.1	long_noncoding_rna			None;(source:Araport11)
AT2G08920.1	long_noncoding_rna			None;(source:Araport11)
AT5G63370.10	protein_coding		CDKG1 interacts with the splicing factor RSZ33 to regulate proper splicing of Cals5 Pre-mRNA.	Protein kinase superfamily protein;(source:Araport11)
AT3G50150.2	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT4G05870.1	long_noncoding_rna			None;(source:Araport11)
AT4G10590.3	protein_coding		encodes a member of the ubiquitin-specific protease family, UBP10	ubiquitin-specific protease 10;(source:Araport11)
AT3G02600.7	protein_coding		Encodes phosphatidic acid phosphatase. Expressed during germination.	lipid phosphate phosphatase 3;(source:Araport11)
AT4G20235.2	protein_coding			cytochrome P450, family 71, subfamily A, polypeptide 28;(source:Araport11)
AT3G24715.2	protein_coding		HCR1 belongs to the B4 group of Raf-like MAPKKKs. It corresponds to a root hydraulic pressure QTL between Col-0 and Bur-0 accessions and appears to contribute to variation in root pressure in different haplotypes. It is involved in potassium-dependent response to hypoxia.	kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT2G44900.2	protein_coding		ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings.	ARABIDILLO-1;(source:Araport11)
AT4G32990.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G16030.4	protein_coding			mental retardation GTPase activating protein;(source:Araport11)
AT5G16030.5	protein_coding			mental retardation GTPase activating protein;(source:Araport11)
ATMG09740.1	pre_trna			pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT2G23987.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G05890.1	long_noncoding_rna			None;(source:Araport11)
AT4G02260.4	protein_coding		Displays guanosine-3 Prime,5 Prime-bis(diphosphate) 3 Prime-diphosphatase activity  but not  guanosine-3 Prime,5 Prime-bis(diphosphate) 3 Prime-diphosphate synthase activity.	RELA/SPOT homolog 1;(source:Araport11)
AT3G29455.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G61210.2	protein_coding		membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formationThe mRNA is cell-to-cell mobile.	soluble N-ethylmaleimide-sensitive factor adaptor protein 33;(source:Araport11)
AT5G02515.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G16030;(source:Araport11)
AT5G22370.3	protein_coding		Encodes QQT1.  Required for early embryo development.  qqt1 mutant lines are embryo-defective.  Participates in the organization of microtubules during cell division.  Interacts with QQT2 (encoded by AT4G21800).	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G34440.2	protein_coding		Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT2G41500.2	protein_coding		Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome.  LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells.	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein;(source:Araport11)
AT1G03180.4	protein_coding			non-structural protein;(source:Araport11)
AT1G03180.5	protein_coding			non-structural protein;(source:Araport11)
AT1G03180.6	protein_coding			non-structural protein;(source:Araport11)
AT3G56220.2	protein_coding			transcription regulator;(source:Araport11)
AT3G25495.3	pseudogene		pseudogene of leucine-rich repeat protein	pseudogene of gamma-irradiation and mitomycin c induced 1;(source:Araport11)
AT3G06115.1	long_noncoding_rna			None;(source:Araport11)
AT1G03180.3	protein_coding			non-structural protein;(source:Araport11)
AT2G40340.6	protein_coding		Encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G06903.1	miRNA_primary_transcript			microRNA ath-MIR773b precursor;(source:Araport11)
AT1G62970.2	protein_coding		SDJ3 functions partially redundantly with SDJ1 and SDJ2 and interacts with SUVH1 and SUVH3 to form a SUVH-SDJ complex. The complex binds promoters with DNA methylation and mediates transcriptional activation of promoter methylated genes.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G23740.6	protein_coding		Encodes a SET-domain protein SUVR5 that mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.	histone-lysine N-methyltransferase SUVR5;(source:Araport11)
AT4G06155.1	long_noncoding_rna			None;(source:Araport11)
AT3G17040.4	protein_coding		It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. It binds in the psbT?psbH intercistronic region and blocks the progression of 5&#8242; &#8594; 3&#8242; exoribonucleases, which defines the 5&#8242; end of processed psbH transcripts and also stabilizes the downstream RNA segment. In addition, HCF107 binding remodels the structure of the psbH 5&#8242; UTR in a way that can account for its ability to enhance psbH translation.	high chlorophyll fluorescent 107;(source:Araport11)
AT2G01830.6	protein_coding		Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane	CHASE domain containing histidine kinase protein;(source:Araport11)
AT1G70030.2	protein_coding			Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT2G23740.5	protein_coding		Encodes a SET-domain protein SUVR5 that mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.	histone-lysine N-methyltransferase SUVR5;(source:Araport11)
AT5G04700.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT2G07656.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G56860.7	protein_coding		encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3 Prime-UTRs and contributing to the stabilization of mRNAs in the nucleus.	UBP1-associated protein 2A;(source:Araport11)
AT2G32210.3	protein_coding			cysteine-rich/transmembrane domain A-like protein;(source:Araport11)
AT2G32210.2	protein_coding			cysteine-rich/transmembrane domain A-like protein;(source:Araport11)
AT5G36250.3	protein_coding		Encodes a myristoylated 2C-type protein phosphatase that interacts with  the catalytic subunit of SnRK1.The mRNA is cell-to-cell mobile.	Protein phosphatase 2C family protein;(source:Araport11)
AT2G39890.3	protein_coding		Encodes a proline transporter with affinity for gly betaine, proline and GABA.  Protein is expressed in the vascular tissue, specifically the phloem.	proline transporter 1;(source:Araport11)
AT2G00970.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G58670.4	protein_coding			2-aminoethanethiol dioxygenase, putative (DUF1637);(source:Araport11)
AT5G13480.3	protein_coding		Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time; affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G30060.2	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT3G54840.3	protein_coding		Encodes a novel Rab-like  GTP-ase that is localized to the peripheral membrane of the endosome. . In its active state interferes with the assembly of GDP-bound ARA7, PUF2, and VPS9a by competitively binding to PUF2 to diminish endosomal transport mediated by canonical RAB5.	Ras-related small GTP-binding family protein;(source:Araport11)
AT1G32270.2	protein_coding		member of SYP2 Gene Family	syntaxin;(source:Araport11)
AT2G05495.1	long_noncoding_rna			None;(source:Araport11)
AT4G19510.10	protein_coding			Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT2G35920.2	protein_coding			RNA helicase family protein;(source:Araport11)
AT2G35920.3	protein_coding			RNA helicase family protein;(source:Araport11)
AT2G00960.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G10540.2	protein_coding			nucleobase-ascorbate transporter 8;(source:Araport11)
AT1G06045.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G24150.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G08897.1	long_noncoding_rna			None;(source:Araport11)
AT2G05100.2	protein_coding		Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a separate gene but appears to be an allele of LHCB2.1.	photosystem II light harvesting complex protein 2.1;(source:Araport11)
AT2G06695.1	long_noncoding_rna			None;(source:Araport11)
AT4G05015.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G04860;(source:Araport11)
AT3G43300.3	protein_coding		AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein.  AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family.  The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells.  HopM1 mediates the destruction of AtMIN7 via the host proteasome.	HOPM interactor 7;(source:Araport11)
AT5G66675.4	protein_coding			transmembrane protein, putative (DUF677);(source:Araport11)
AT5G02825.1	other_rna			None;(source:Araport11)
AT3G05245.1	long_noncoding_rna			None;(source:Araport11)
AT5G07130.3	protein_coding		putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	laccase 13;(source:Araport11)
AT2G22980.5	protein_coding			serine carboxypeptidase-like 13;(source:Araport11)
AT5G10965.3	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT5G10965.2	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT5G10965.1	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT2G46980.4	protein_coding		Encodes ASY3, a coiled-coil domain protein that is required for normal meiosis.	asynaptic protein;(source:Araport11)
AT2G46980.5	protein_coding		Encodes ASY3, a coiled-coil domain protein that is required for normal meiosis.	asynaptic protein;(source:Araport11)
AT2G46980.6	protein_coding		Encodes ASY3, a coiled-coil domain protein that is required for normal meiosis.	asynaptic protein;(source:Araport11)
AT5G28380.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G29644.5	antisense_long_noncoding_rna		Natural antisense transcript overlaps with AT3G29642. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT3G29642;(source:Araport11)
AT4G28570.2	protein_coding			Long-chain fatty alcohol dehydrogenase family protein;(source:Araport11)
AT3G07020.3	protein_coding		encodes a 3beta-hydroxy sterol UDP-glucosyltransferase. ugt80a2 mutant plants have reduced steryl glycoside and acyl steryl glycoside levels and reduced seed size. ugt80a2/b1 double mutants have normal levels of celluose and normal cold stress tolerance.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G20835.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G03885.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G29644.3	antisense_long_noncoding_rna		Natural antisense transcript overlaps with AT3G29642. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT3G29642;(source:Araport11)
AT3G14150.4	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G61480.2	protein_coding			Quinoprotein amine dehydrogenase, beta chain-like;(source:Araport11)
AT4G06315.1	small_nucleolar_rna			None;(source:Araport11)
AT1G09817.1	miRNA_primary_transcript			microRNA ath-MIR833b precursor;(source:Araport11)
AT5G41730.2	protein_coding			Protein kinase family protein;(source:Araport11)
AT3G03420.2	protein_coding			Ku70-binding family protein;(source:Araport11)
AT5G43810.4	protein_coding		Encodes Argonaute10, a member of the EIF2C (elongation initiation factor 2c)/  Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. AGO10 specifically sequesters miR166/165 to regulate shoot apical meristem development.	Stabilizer of iron transporter SufD / Polynucleotidyl transferase;(source:Araport11)
AT5G64340.uORF1-2	uORF			Derives_from AT5G64340;(source:Araport11)
AT1G04160.2	protein_coding		Encodes a member of the type XI myosin protein family involved in root hair elongation.	myosin XI B;(source:Araport11)
AT4G07265.1	long_noncoding_rna			None;(source:Araport11)
AT1G17940.3	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT1G17232.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17230;(source:Araport11)
AT1G17940.5	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT1G17940.4	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT1G17940.6	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT4G21760.2	protein_coding			beta-glucosidase 47;(source:Araport11)
AT1G05217.1	long_noncoding_rna			None;(source:Araport11)
AT1G04500.3	protein_coding			CCT motif family protein;(source:Araport11)
AT4G08869.2	protein_coding		Encodes a defensin-like (DEFL) family protein. Pollen tube emergence accelerator that favors conspecific pollen over pollen from other species and thus promotes reproductive isolation.	Putative membrane lipoprotein;(source:Araport11)
AT4G27500.2	protein_coding		interacts with H+-ATPase, and regulates its activityThe mRNA is cell-to-cell mobile.	proton pump interactor 1;(source:Araport11)
AT1G18720.2	protein_coding			ER membrane protein, putative (DUF962);(source:Araport11)
AT1G73300.2	protein_coding			serine carboxypeptidase-like 2;(source:Araport11)
AT4G01810.3	protein_coding		Sec23 homolog , forms a distinct clade with SEC23D.Mutants have defects in pollen exine patterning, tapetal development and pollen intine formation.	Sec23/Sec24 protein transport family protein;(source:Araport11)
AT4G01810.2	protein_coding		Sec23 homolog , forms a distinct clade with SEC23D.Mutants have defects in pollen exine patterning, tapetal development and pollen intine formation.	Sec23/Sec24 protein transport family protein;(source:Araport11)
AT4G05700.1	long_noncoding_rna			None;(source:Araport11)
AT1G17960.2	protein_coding			Threonyl-tRNA synthetase;(source:Araport11)
AT4G35270.2	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT3G55060.2	protein_coding			CAP-gly domain linker;(source:Araport11)
AT2G07325.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G20710;(source:Araport11)
AT4G16650.2	protein_coding			O-fucosyltransferase family protein;(source:Araport11)
AT2G00690.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G44180.2	protein_coding		Encodes a MAP2 like methionine aminopeptidase. In MAP1A mutant background plants show an increased sensitivity to fumagillin resulting in defects in development. Phenotype is similar to RNAi lines which knock out all MAP2/MAP1 loci.	methionine aminopeptidase 2A;(source:Araport11)
AT2G19900.2	protein_coding		The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. The enzyme is active in vitro and appears to function as a homohexamer or homooctamer. It is believed to be a cytosolic protein.	NADP-malic enzyme 1;(source:Araport11)
AT4G20575.1	protein_coding			receptor-like kinase;(source:Araport11)
AT5G00585.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G09085.1	long_noncoding_rna			None;(source:Araport11)
AT1G07237.1	long_noncoding_rna			None;(source:Araport11)
AT1G60860.2	protein_coding		A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.	ARF-GAP domain 2;(source:Araport11)
AT5G50443.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G08245.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52130;(source:Araport11)
AT4G21860.4	protein_coding			methionine sulfoxide reductase B 2;(source:Araport11)
AT1G02205.5	protein_coding		Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined.	Fatty acid hydroxylase superfamily;(source:Araport11)
AT5G01730.11	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein 4;(source:Araport11)
AT5G56985.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G01730.10	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein 4;(source:Araport11)
AT5G09720.2	protein_coding			Magnesium transporter CorA-like family protein;(source:Araport11)
AT5G02245.1	small_nuclear_rna			U2;(source:Araport11)
AT5G14550.4	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G14550.3	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT3G19830.3	protein_coding			Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G05250.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G05250.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G03500.4	protein_coding		Encodes together with its paralog MED7A a subunit of the middle module of the transcriptional co-regulator Mediator complex. Regulates genes required for normal development of etiolated seedlings.	Mediator complex, subunit Med7;(source:Araport11)
AT5G03500.5	protein_coding		Encodes together with its paralog MED7A a subunit of the middle module of the transcriptional co-regulator Mediator complex. Regulates genes required for normal development of etiolated seedlings.	Mediator complex, subunit Med7;(source:Araport11)
AT5G03500.6	protein_coding		Encodes together with its paralog MED7A a subunit of the middle module of the transcriptional co-regulator Mediator complex. Regulates genes required for normal development of etiolated seedlings.	Mediator complex, subunit Med7;(source:Araport11)
AT5G03500.7	protein_coding		Encodes together with its paralog MED7A a subunit of the middle module of the transcriptional co-regulator Mediator complex. Regulates genes required for normal development of etiolated seedlings.	Mediator complex, subunit Med7;(source:Araport11)
AT1G09973.1	long_noncoding_rna			None;(source:Araport11)
AT5G06745.1	long_noncoding_rna			None;(source:Araport11)
AT3G46980.7	protein_coding		Encodes an inorganic phosphate transporter (PHT4;3).	phosphate transporter 4;(source:Araport11)
AT4G02905.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G46710.3	protein_coding			PLATZ transcription factor family protein;(source:Araport11)
AT1G05030.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G31432.2	protein_coding			Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G63140.3	protein_coding			O-methyltransferase family protein;(source:Araport11)
AT5G07105.1	small_nucleolar_rna			None;(source:Araport11)
AT1G63140.4	protein_coding			O-methyltransferase family protein;(source:Araport11)
AT5G41360.2	protein_coding		Encodes XPB2, a DNA repair protein and transcription factor.  Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies.	homolog of Xeroderma pigmentosum complementation group B 2;(source:Araport11)
AT1G08357.1	long_noncoding_rna			None;(source:Araport11)
AT1G51270.12	protein_coding			vesicle-associated protein 1-4;(source:Araport11)
AT1G35220.7	protein_coding			FAM91 carboxy-terminus protein;(source:Araport11)
AT1G08537.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G62590;(source:Araport11)
AT1G47340.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT3G26990.2	protein_coding			ENTH/VHS family protein;(source:Araport11)
AT1G16840.5	protein_coding			hypothetical protein;(source:Araport11)
AT1G02670.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G12020.4	protein_coding		Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301.	protein kinase family protein;(source:Araport11)
AT1G08817.1	long_noncoding_rna			None;(source:Araport11)
AT4G32330.4	protein_coding		WDL5 is an target of EIN3 that co-localizes with cortical microtubles. It its thought to function to stabilize microtubles during ethylene induced hypocotyl elongation.	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT4G12020.7	protein_coding		Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301.	protein kinase family protein;(source:Araport11)
AT1G33290.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G12020.9	protein_coding		Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301.	protein kinase family protein;(source:Araport11)
AT5G56420.3	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G31720.5	protein_coding			chitin synthase, putative (DUF1218);(source:Araport11)
AT1G31720.4	protein_coding			chitin synthase, putative (DUF1218);(source:Araport11)
AT1G31720.7	protein_coding			chitin synthase, putative (DUF1218);(source:Araport11)
AT1G31720.6	protein_coding			chitin synthase, putative (DUF1218);(source:Araport11)
AT1G31720.3	protein_coding			chitin synthase, putative (DUF1218);(source:Araport11)
AT2G37860.4	protein_coding		Encodes a protein involved in differential development of bundle sheath and mesophyll cell chloroplasts.	reticulata-like protein, putative (DUF3411);(source:Araport11)
AT3G00270.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G26700.2	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT5G08635.1	long_noncoding_rna			None;(source:Araport11)
AT1G72852.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G72850;(source:Araport11)
AT5G05955.1	long_noncoding_rna			None;(source:Araport11)
AT1G65810.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G60720.3	protein_coding		Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	plasmodesmata-located protein 8;(source:Araport11)
AT3G60720.2	protein_coding		Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	plasmodesmata-located protein 8;(source:Araport11)
AT1G08460.2	protein_coding			histone deacetylase 8;(source:Araport11)
AT1G20683.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G06955.1	long_noncoding_rna			None;(source:Araport11)
AT5G04280.2	protein_coding		Encodes one of the zinc finger-containing glycine-rich RNA-binding proteins involved in cold tolerance: AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b), AT5G04280 (AtRZ-1c).  It also, along with AtRZ-1b, plays important roles in plant development, pre- mRNA splicing, and general gene expression.	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT5G09950.2	protein_coding		Encodes a DYW-class PPR protein required   for RNA editing at four sites in mitochondria of A. thaliana.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G32930.2	protein_coding		Protein of unknown function. Locus is correlated with bacterial hypersensitive response, expression is reduced after injection with avrRpm1.	6,7-dimethyl-8-ribityllumazine synthase;(source:Araport11)
AT5G39790.2	protein_coding		Encodes a chloroplast localized protein that is involved in protein translocation and starch metabolism. PTST helps localize GBSS to the starch granules where GBSS functions in amylose biosynthesis.	PROTEIN TARGETING TO STARCH (PTST);(source:Araport11)
AT5G52910.2	protein_coding		homolog of Drosophila timeless	timeless family protein;(source:Araport11)
AT5G45610.2	protein_coding		Encodes a homologue of the ATR-interacting protein ATRIP.  Mutant (named sensitive to UV2 or suv2) is UVB-hypersensitive and defective in DNA damage response.	protein dimerization;(source:Araport11)
AT1G52320.5	protein_coding			kinesin-like protein;(source:Araport11)
AT1G67260.3	protein_coding		Encodes protein with TCP (TB1,CYC,PCF) domain which is likely to be involved in DNA binding and protein-protein interactions. Based on genome analysis, there is a 9-member gene family that possesses this domain in Arabidopsis. Orthologue of Antirrhinum gene CYCLOIDEA.	TCP family transcription factor;(source:Araport11)
AT3G04225.1	long_noncoding_rna			None;(source:Araport11)
AT1G63610.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G39580.2	protein_coding			zinc finger C3H1 domain protein;(source:Araport11)
AT3G56870.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G09807.1	long_noncoding_rna			None;(source:Araport11)
AT5G04115.1	long_noncoding_rna			None;(source:Araport11)
AT1G17090.3	protein_coding			transmembrane protein;(source:Araport11)
AT3G08210.1	small_nucleolar_rna			None;(source:Araport11)
AT4G24430.2	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT1G17090.5	protein_coding			transmembrane protein;(source:Araport11)
AT3G07930.4	protein_coding			DNA glycosylase superfamily protein;(source:Araport11)
AT5G12920.4	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G12920.5	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G12920.6	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G12920.7	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G39500.2	protein_coding			cytochrome P450, family 96, subfamily A, polypeptide 11;(source:Araport11)
AT4G24770.2	protein_coding		Encodes a chloroplast RNA-binding protein.  A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).  Required for editing and stability of specific chloroplast mRNAs.	31-kDa RNA binding protein;(source:Araport11)
AT2G08270.1	long_noncoding_rna			None;(source:Araport11)
AT3G42995.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G22070.4	protein_coding		member of WRKY Transcription Factor; Group II-b	WRKY DNA-binding protein 31;(source:Araport11)
AT3G06630.4	protein_coding			protein kinase family protein;(source:Araport11)
AT5G50270.2	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G04533.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G06923;(source:Araport11)
AT4G28020.2	protein_coding			tRNA-thr(GGU) m(6)t(6)A37 methyltransferase;(source:Araport11)
AT2G33390.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G17360.2	protein_coding		encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.	Formyl transferase;(source:Araport11)
AT4G35880.2	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G12850.4	protein_coding		Encodes one of four FRS (FAR1-RELATED SEQUENCE) factor-like genes in Arabidopsis.  FRS factors are characterized by having an N-terminal C2H2-type chelating motif of the WRKY- Glial Cell Missing1 family, a central core transposase domain of Mutator-like element transposases, and a C-terminal SWIM domain. The four FRF-like genes in  Arabidopsis share only the N-terminal motif with FRS proteins.	Far-red impaired responsive (FAR1) family protein;(source:Araport11)
AT5G09850.3	protein_coding			Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT3G01305.1	long_noncoding_rna			None;(source:Araport11)
AT3G09995.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G63500;(source:Araport11)
AT3G44690.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G02690.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G52710.2	protein_coding			Copper transport protein family;(source:Araport11)
AT1G01210.2	protein_coding			DNA-directed RNA polymerase, subunit M, archaeal;(source:Araport11)
AT2G06635.1	long_noncoding_rna			None;(source:Araport11)
AT4G03845.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G01026;(source:Araport11)
AT1G01210.3	protein_coding			DNA-directed RNA polymerase, subunit M, archaeal;(source:Araport11)
AT4G36830.2	protein_coding		ELO family protein.	GNS1/SUR4 membrane protein family;(source:Araport11)
AT2G08235.1	miRNA_primary_transcript			microRNA ath-MIR5021 precursor;(source:Araport11)
AT5G08655.1	long_noncoding_rna			None;(source:Araport11)
AT5G62570.3	protein_coding			Calmodulin binding protein-like protein;(source:Araport11)
AT4G22950.3	protein_coding		MADS-box protein AGL19	AGAMOUS-like 19;(source:Araport11)
AT1G06580.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G33420.2	protein_coding			Peroxidase superfamily protein;(source:Araport11)
AT5G10510.4	protein_coding		Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. It is also required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions. Intronic sequences are required for its expression in flowers.Acts redundantly with PLT5 and 7 in lateral root pattern formation.	AINTEGUMENTA-like 6;(source:Araport11)
AT3G10915.7	protein_coding			Reticulon family protein;(source:Araport11)
AT1G05587.1	long_noncoding_rna			None;(source:Araport11)
AT1G35516.2	protein_coding			myb-like transcription factor family protein;(source:Araport11)
AT3G03285.1	long_noncoding_rna			None;(source:Araport11)
AT2G19250.2	pseudogene			pseudogene of ALBINA 1;(source:Araport11)
AT2G19250.3	pseudogene			pseudogene of ALBINA 1;(source:Araport11)
AT1G25230.2	protein_coding			Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT1G25230.3	protein_coding			Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT2G19250.6	pseudogene			pseudogene of ALBINA 1;(source:Araport11)
AT2G34920.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G17615.5	protein_coding		Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.	calcineurin B-like protein 1;(source:Araport11)
AT3G08130.1	long_noncoding_rna			None;(source:Araport11)
AT1G75720.3	protein_coding			WEB family protein (DUF827);(source:Araport11)
AT5G24260.3	protein_coding			prolyl oligopeptidase family protein;(source:Araport11)
AT4G18230.3	protein_coding			UDP-N-acetylglucosamine transferase subunit ALG14-like protein;(source:Araport11)
AT4G18230.2	protein_coding			UDP-N-acetylglucosamine transferase subunit ALG14-like protein;(source:Araport11)
AT5G47380.5	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT2G24300.3	protein_coding			Calmodulin-binding protein;(source:Araport11)
AT4G18230.4	protein_coding			UDP-N-acetylglucosamine transferase subunit ALG14-like protein;(source:Araport11)
AT5G18680.2	protein_coding		Member of TLP family of tubby like proteins that also contain an F-Box. Localized to the plasma membrane.	tubby like protein 11;(source:Araport11)
AT3G50240.2	protein_coding		Encodes a kinesin-related protein.	ATP binding microtubule motor family protein;(source:Araport11)
AT2G26430.4	protein_coding		Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.	arginine-rich cyclin 1;(source:Araport11)
AT2G28755.2	protein_coding			UDP-D-glucuronate carboxy-lyase-like protein;(source:Araport11)
AT2G28960.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G35730.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G54530.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G08347.1	small_nucleolar_rna			None;(source:Araport11)
AT1G14260.3	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G11350.3	protein_coding		Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT1G56180.2	protein_coding		VIR3 encodes a putative chloroplast metalloprotease that is localized to the thylakoid membrane. The vir3-1 mutant came out of a genetic suppressor screen of the Arabidopsis variegation mutant yellow variegated (var2). The suppressor displayed an additional virescent phenotype, i.e. the bases of young leaves were yellow, and leaf color gradually turned to green toward the leaf tips.	ATP-dependent zinc metalloprotease;(source:Araport11)
AT1G54440.3	protein_coding		Rrp6-like protein, controls RNA-directed DNA methylation by helping with the retention of noncoding RNAs in normal cells.	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein;(source:Araport11)
AT5G65970.2	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s	Seven transmembrane MLO family protein;(source:Araport11)
AT1G54440.5	protein_coding		Rrp6-like protein, controls RNA-directed DNA methylation by helping with the retention of noncoding RNAs in normal cells.	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein;(source:Araport11)
AT1G54440.4	protein_coding		Rrp6-like protein, controls RNA-directed DNA methylation by helping with the retention of noncoding RNAs in normal cells.	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein;(source:Araport11)
AT2G35070.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G57770.2	protein_coding		FORKED-LIKE family member, part of Group 2 (Group 1 consists of FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT4G05135.1	long_noncoding_rna			None;(source:Araport11)
AT1G70630.3	protein_coding			Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT3G19190.3	protein_coding		Encodes autophagy-related 2 (ATG2).The mRNA is cell-to-cell mobile. Autophagy controls guard cell ROS homeostasis  by eliminating oxidized peroxisomes, thereby allowing stomatal  opening.	autophagy 2;(source:Araport11)
AT4G02530.3	protein_coding		MPH2 is a green lineage-specific thylakoid lumen protein required for photosynthetic acclimation of PSII to stressful light conditions (PMID:28874535).	chloroplast thylakoid lumen protein;(source:Araport11)
AT4G02530.2	protein_coding		MPH2 is a green lineage-specific thylakoid lumen protein required for photosynthetic acclimation of PSII to stressful light conditions (PMID:28874535).	chloroplast thylakoid lumen protein;(source:Araport11)
AT1G06207.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G29040;(source:Araport11)
AT3G07395.1	long_noncoding_rna			None;(source:Araport11)
AT1G30290.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G35050.2	protein_coding			kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT3G03795.1	long_noncoding_rna			None;(source:Araport11)
AT3G04890.3	protein_coding			adenine phosphoribosyltransferase-like protein, putative (DUF2358);(source:Araport11)
AT2G05035.1	long_noncoding_rna			None;(source:Araport11)
AT1G72990.3	protein_coding			beta-galactosidase 17;(source:Araport11)
AT4G05320.8	protein_coding		One of five polyubiquitin genes in A. thaliana.  These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.The mRNA is cell-to-cell mobile.	polyubiquitin 10;(source:Araport11)
AT2G10553.1	protein_coding			zinc finger CCCH domain protein;(source:Araport11)
AT5G50090.3	protein_coding			D-ribose-binding periplasmic protein;(source:Araport11)
AT5G04195.1	long_noncoding_rna			None;(source:Araport11)
AT5G38100.3	protein_coding		SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G04225.1	long_noncoding_rna			None;(source:Araport11)
AT5G03915.1	long_noncoding_rna			None;(source:Araport11)
AT5G38100.4	protein_coding		SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G23660.4	protein_coding		Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50).	polyprenyltransferase 1;(source:Araport11)
AT5G35190.2	protein_coding			proline-rich extensin-like family protein;(source:Araport11)
AT1G08820.4	protein_coding		Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.	vamp/synaptobrevin-associated protein 27-2;(source:Araport11)
AT1G61010.4	protein_coding			cleavage and polyadenylation specificity factor 73-I;(source:Araport11)
AT1G61010.5	protein_coding			cleavage and polyadenylation specificity factor 73-I;(source:Araport11)
AT1G59780.2	protein_coding			NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT5G26865.1	protein_coding			AGAMOUS-like MADS-box protein;(source:Araport11)
AT3G63340.6	protein_coding			kinase superfamily protein;(source:Araport11)
AT2G43830.3	pseudogene			pseudogene of Protein kinase superfamily protein;(source:Araport11)
AT5G52970.2	protein_coding			thylakoid lumen 15.0 kDa protein;(source:Araport11)
AT3G60520.2	protein_coding			zinc ion-binding protein;(source:Araport11)
AT4G13020.7	protein_coding		Encodes a member of the cdc2+ family of protein kinases MHK.  Similar to the mak genes of rats.  mak encodes a protein kinase that may play a role in spermatogenesis.	Protein kinase superfamily protein;(source:Araport11)
AT4G13020.6	protein_coding		Encodes a member of the cdc2+ family of protein kinases MHK.  Similar to the mak genes of rats.  mak encodes a protein kinase that may play a role in spermatogenesis.	Protein kinase superfamily protein;(source:Araport11)
AT3G44370.2	protein_coding		Member of the Oxa1 super family protein insertases. Involved in biogenesis of mitochondrial respiratory chain complex IV, specifically via membrane insertion of COX2.	Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT3G42075.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G09935.2	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT1G09247.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G71430;(source:Araport11)
AT1G04247.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G04220;(source:Araport11)
AT1G78490.2	protein_coding		member of CYP708A family. The mRNA is cell-to-cell mobile.	cytochrome P450, family 708, subfamily A, polypeptide 3;(source:Araport11)
AT1G48390.2	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT1G48390.3	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT3G19570.4	protein_coding		Encodes SCO3 (snowy cotyledon3), a member of a largely uncharacterized protein family unique to the plant kingdom. The sco3-1 mutation alters chloroplast morphology and development, reduces chlorophyll accumulation, impairs thylakoid formation and photosynthesis in seedlings, and results in photoinhibition under extreme CO(2) concentrations in mature leaves. SCO3 is targeted to the periphery of peroxisomes.	SNOWY COTYLEDON protein (DUF566);(source:Araport11)
AT2G38600.2	protein_coding			HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT1G06217.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G29050;(source:Araport11)
AT2G03370.2	protein_coding			O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase-like protein;(source:Araport11)
AT3G27990.3	antisense_long_noncoding_rna			None;(source:Araport11)
AT4G09045.1	long_noncoding_rna			None;(source:Araport11)
AT3G52072.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52070;(source:Araport11)
AT5G06985.1	long_noncoding_rna			None;(source:Araport11)
AT4G09535.1	antisense_rna			Natural antisense transcript overlaps with AT4G37660;(source:Araport11)
AT3G57200.2	protein_coding			glycosyltransferase-like protein;(source:Araport11)
AT1G50280.2	protein_coding		BTB/POZ protein that forms a complex with CUL3a. Involved in repression of ABA responses.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G27490.2	protein_coding		GSR1 is a tandem plant PhD homeodomain protein involved in auxin mediated seed dormancy and germination. It was identified in a screen for mutations resistant to the compound germostatin. It interacts with components of the auxin signaling pathway and may function as an auxin stimulated co-repressor.	Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G03995.1	long_noncoding_rna			None;(source:Araport11)
AT3G14270.2	protein_coding		Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. FAB1A and FAB1B complement the enlarged vacuolar phenotype of the fission yeast ste12delta mutant.	phosphatidylinositol-4-phosphate 5-kinase family protein;(source:Araport11)
AT4G07165.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G23610;(source:Araport11)
AT2G29210.2	protein_coding			splicing factor PWI domain-containing protein;(source:Araport11)
AT5G01017.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G19570.3	protein_coding		Encodes SCO3 (snowy cotyledon3), a member of a largely uncharacterized protein family unique to the plant kingdom. The sco3-1 mutation alters chloroplast morphology and development, reduces chlorophyll accumulation, impairs thylakoid formation and photosynthesis in seedlings, and results in photoinhibition under extreme CO(2) concentrations in mature leaves. SCO3 is targeted to the periphery of peroxisomes.	SNOWY COTYLEDON protein (DUF566);(source:Araport11)
AT3G52750.3	protein_coding		Nuclear gene that encodes a plastidial division protein (FtsZ2-2).   FtsZ2-2 is involved in chloroplast morphology and internal organisation in addition to participating in chloroplast partition	Tubulin/FtsZ family protein;(source:Araport11)
AT3G02780.2	protein_coding		Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.	isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2;(source:Araport11)
AT3G62900.3	protein_coding			CW-type Zinc Finger;(source:Araport11)
AT2G42170.2	protein_coding			Actin family protein;(source:Araport11)
AT1G79090.3	protein_coding		Encodes a component of the mRNA decapping machinery that is found in complexes with and is phosphorylated by MPK4.  The protein can be found in P-bodies after treatment with PAMPs. Pat1 mutants exhibit dwarfism and de-repressed immunity dependent on the immune receptor SUMM2.  The pat1 constitutive defense phenotype is suppressed by summ2 such that pat1 summ2 mutants display a wild-type phenotype in response to biotrophic and necrotrophic pathogens.	topoisomerase II-associated protein;(source:Araport11)
AT1G47845.1	protein_coding			hexokinase;(source:Araport11)
AT2G48030.2	protein_coding			DNAse I-like superfamily protein;(source:Araport11)
AT2G42170.5	protein_coding			Actin family protein;(source:Araport11)
AT3G54590.3	protein_coding		Encodes a hydroxyproline-rich glycoprotein.The mRNA is cell-to-cell mobile.	hydroxyproline-rich glycoprotein;(source:Araport11)
AT3G06745.1	long_noncoding_rna			None;(source:Araport11)
AT2G08770.1	small_nucleolar_rna			None;(source:Araport11)
AT5G24630.7	protein_coding		This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	double-stranded DNA binding protein;(source:Araport11)
AT1G08523.1	long_noncoding_rna			None;(source:Araport11)
AT3G20200.2	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT3G20200.3	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT5G04865.1	long_noncoding_rna			None;(source:Araport11)
AT5G36740.2	protein_coding			Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT1G08767.1	long_noncoding_rna			None;(source:Araport11)
AT1G53230.2	protein_coding		Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterochronic regulation of leaf differentiation.	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3;(source:Araport11)
AT3G02760.2	protein_coding			Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT3G09162.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G24710.3	protein_coding		Encodes an AAA+ ATPase that mediates meiotic chromosome remodeling  and crossover maturation.	pachytene checkpoint-like protein;(source:Araport11)
AT4G24710.2	protein_coding		Encodes an AAA+ ATPase that mediates meiotic chromosome remodeling  and crossover maturation.	pachytene checkpoint-like protein;(source:Araport11)
AT3G60415.1	protein_coding			phosphoglycerate mutase family protein;(source:Araport11)
AT3G03675.1	long_noncoding_rna			None;(source:Araport11)
AT4G24710.4	protein_coding		Encodes an AAA+ ATPase that mediates meiotic chromosome remodeling  and crossover maturation.	pachytene checkpoint-like protein;(source:Araport11)
AT5G14150.2	protein_coding			Emb:.1 protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT3G60286.2	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G60286.3	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G60286.4	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G60286.5	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G60286.6	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT3G01935.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G07120;(source:Araport11)
AT4G09645.1	long_noncoding_rna			None;(source:Araport11)
AT2G16790.5	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G05930.7	protein_coding			guanylyl cyclase 1;(source:Araport11)
AT2G33240.5	protein_coding		member of Myosin-like proteins	myosin XI D;(source:Araport11)
AT5G05930.5	protein_coding			guanylyl cyclase 1;(source:Araport11)
AT5G05930.4	protein_coding			guanylyl cyclase 1;(source:Araport11)
AT4G40030.4	protein_coding			Histone superfamily protein;(source:Araport11)
AT1G06287.1	long_noncoding_rna			None;(source:Araport11)
AT2G33240.4	protein_coding		member of Myosin-like proteins	myosin XI D;(source:Araport11)
AT2G44140.3	protein_coding			Peptidase family C54 protein;(source:Araport11)
AT3G24255.4	protein_coding			RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT2G09545.1	long_noncoding_rna			None;(source:Araport11)
AT2G04865.2	protein_coding		Encodes a nuclear localized aminotransferase-like protein containing a plant mobile domain.The mRNA is cell-to-cell mobile.	Aminotransferase-like, plant mobile domain family protein;(source:Araport11)
AT3G24255.7	protein_coding			RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G04733.1	small_nuclear_rna			U2;(source:Araport11)
AT5G05865.1	antisense_rna			Natural antisense transcript overlaps with AT5G38900;(source:Araport11)
AT3G24255.3	protein_coding			RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT4G40050.2	protein_coding			signal transducer, putative (DUF3550/UPF0682);(source:Araport11)
AT1G08987.1	small_nuclear_rna			U4;(source:Araport11)
AT3G24255.8	protein_coding			RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT1G19660.3	protein_coding			Wound-responsive family protein;(source:Araport11)
AT4G36990.uORF1	uORF			Derives_from AT4G36990;(source:Araport11)
AT5G08715.1	long_noncoding_rna			None;(source:Araport11)
AT2G04665.1	long_noncoding_rna			None;(source:Araport11)
AT2G33240.8	protein_coding		member of Myosin-like proteins	myosin XI D;(source:Araport11)
AT3G02535.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G12510;(source:Araport11)
AT1G08557.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G62720;(source:Araport11)
AT5G03305.1	miRNA_primary_transcript			microRNA ath-MIR1888a precursor;(source:Araport11)
AT3G22121.3	antisense_long_noncoding_rna		Natural antisense transcript overlaps with AT3G22120. The RNA is cell-to-cell mobile.	Natural antisense transcript overlaps with AT3G22120;(source:Araport11)
AT3G49845.2	protein_coding			cysteine-rich TM module stress tolerance protein;(source:Araport11)
AT2G40110.4	protein_coding			Yippee family putative zinc-binding protein;(source:Araport11)
AT2G04235.4	protein_coding			hypothetical protein;(source:Araport11)
AT4G12290.2	protein_coding		Copper amine oxidase. Induced by ABA and involved in stomatal closure.	Copper amine oxidase family protein;(source:Araport11)
AT2G04235.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G11910.2	protein_coding		Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).	aspartic proteinase A1;(source:Araport11)
AT3G03615.1	long_noncoding_rna			None;(source:Araport11)
AT5G55400.2	protein_coding		Encodes a member of the fimbrin family. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	Actin binding Calponin homology (CH) domain-containing protein;(source:Araport11)
AT5G55400.3	protein_coding		Encodes a member of the fimbrin family. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	Actin binding Calponin homology (CH) domain-containing protein;(source:Araport11)
AT4G01985.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G63340.8	protein_coding			kinase superfamily protein;(source:Araport11)
AT1G06957.1	long_noncoding_rna			None;(source:Araport11)
AT1G76170.2	protein_coding			2-thiocytidine tRNA biosynthesis protein, TtcA;(source:Araport11)
AT1G76170.5	protein_coding			2-thiocytidine tRNA biosynthesis protein, TtcA;(source:Araport11)
AT1G76170.4	protein_coding			2-thiocytidine tRNA biosynthesis protein, TtcA;(source:Araport11)
AT1G76170.7	protein_coding			2-thiocytidine tRNA biosynthesis protein, TtcA;(source:Araport11)
AT1G76170.6	protein_coding			2-thiocytidine tRNA biosynthesis protein, TtcA;(source:Araport11)
AT5G42480.2	protein_coding		Shows homology to the cyanobacterial cell division protein Ftn2, mutant only has two mesophyll cell chloroplasts.  Protein was localized to a ring at the center of the chloroplasts. Probably involved in functions in the assembly and/or stabilization of the plastid-dividing FtsZ ring, inhibiting FtsZ filament formation in the chloroplast.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G46790.2	protein_coding		Encodes a member of the PYR (pyrabactin resistance  )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members.  PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2. Negative regulation of ABA response as a result of phosphorylation of S136 and S182 sites by AEL1/3/4.	PYR1-like 1;(source:Araport11)
AT5G01415.1	long_noncoding_rna			None;(source:Araport11)
AT2G05925.1	long_noncoding_rna			None;(source:Araport11)
AT1G63180.2	protein_coding		Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development.	UDP-D-glucose/UDP-D-galactose 4-epimerase 3;(source:Araport11)
AT2G08435.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G31390;(source:Araport11)
AT5G61510.2	protein_coding			GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT3G26730.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G26730.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G26730.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G26730.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G26730.6	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G26730.7	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G26730.8	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G01285.1	long_noncoding_rna			None;(source:Araport11)
AT3G27110.5	protein_coding		PGM48 is a member of a plant specific clade of metallo-endopeptidase proteins. It is found in plastoglobules. Analysis of over-expression and loss of function phenotypes suggests PGM48 may have a role in positively regulating senescence.	Peptidase family M48 family protein;(source:Araport11)
AT3G27110.4	protein_coding		PGM48 is a member of a plant specific clade of metallo-endopeptidase proteins. It is found in plastoglobules. Analysis of over-expression and loss of function phenotypes suggests PGM48 may have a role in positively regulating senescence.	Peptidase family M48 family protein;(source:Araport11)
AT2G09430.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G43235;(source:Araport11)
AT1G09350.2	protein_coding		Predicted to encode a galactinol synthase	galactinol synthase 3;(source:Araport11)
AT4G23430.4	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G04723.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G09795;(source:Araport11)
AT3G22980.3	protein_coding			Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT3G22980.2	protein_coding			Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT3G18215.2	protein_coding			transmembrane protein, putative (Protein of unknown function, DUF599);(source:Araport11)
AT3G62900.2	protein_coding			CW-type Zinc Finger;(source:Araport11)
AT1G10120.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G09233.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G71310;(source:Araport11)
AT1G14520.3	protein_coding		Encodes MIOX1.  Belongs to  myo-inositol oxygenase gene family.	myo-inositol oxygenase 1;(source:Araport11)
AT4G17910.4	protein_coding			transferases, transferring acyl groups;(source:Araport11)
AT2G13665.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G13660;(source:Araport11)
AT2G14945.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G07855.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G27500;(source:Araport11)
AT2G04255.1	long_noncoding_rna			None;(source:Araport11)
AT1G08620.3	protein_coding			Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11)
AT1G08620.4	protein_coding			Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11)
AT5G04280.3	protein_coding		Encodes one of the zinc finger-containing glycine-rich RNA-binding proteins involved in cold tolerance: AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b), AT5G04280 (AtRZ-1c).  It also, along with AtRZ-1b, plays important roles in plant development, pre- mRNA splicing, and general gene expression.	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT1G30270.uORF1	uORF			Derives_from AT1G30270;(source:Araport11)
AT3G63340.5	protein_coding			kinase superfamily protein;(source:Araport11)
AT1G68568.3	antisense_rna			Natural antisense transcript overlaps with AT1G68570;(source:Araport11)
AT3G05720.2	protein_coding			importin alpha isoform 7;(source:Araport11)
AT2G18790.2	protein_coding		Red/far-red photoreceptor involved in the regulation of de-etiolation. Exists in two inter-convertible forms: Pr and Pfr (active). Involved in the light-promotion of seed germination and in the shade avoidance response. Promotes seedling etiolation in both the presence and absence of phytochrome A. Overexpression results in etiolation under far-red light. Accumulates in the nucleus after exposure to far red light. The phosphorylation state of the Ser-86 residue of the phytochrome B molecule alters dark reversion of the molecule.The mRNA is cell-to-cell mobile.	phytochrome B;(source:Araport11)
AT2G07617.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G08137.1	long_noncoding_rna			None;(source:Araport11)
AT1G09125.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G60787.3	protein_coding			cysteine/histidine-rich C1 domain protein;(source:Araport11)
AT1G60787.1	protein_coding			cysteine/histidine-rich C1 domain protein;(source:Araport11)
AT1G60787.4	protein_coding			cysteine/histidine-rich C1 domain protein;(source:Araport11)
AT4G03270.2	protein_coding		Cyclin D6, involved in cortex/endodermis asymmetric stem cell division.	Cyclin D6;(source:Araport11)
AT1G70630.4	protein_coding			Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G70630.5	protein_coding			Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G70630.6	protein_coding			Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G70630.7	protein_coding			Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G70630.2	protein_coding			Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT1G68890.2	protein_coding		Homologous to the four eubacterial men genes involved in menanoquinone biosynthesis. Studies of mutants defective in this gene demonstrated its involvement in phylloquinone biosynthesis in Arabidopsis.The mRNA is cell-to-cell mobile.	2-oxoglutarate decarboxylase/hydro-lyase/magnesium ion-binding protein;(source:Araport11)
AT1G06947.1	long_noncoding_rna			None;(source:Araport11)
AT4G08005.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G28170;(source:Araport11)
AT1G68568.2	antisense_rna			Natural antisense transcript overlaps with AT1G68570;(source:Araport11)
AT1G63530.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G05753.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G22500;(source:Araport11)
AT5G56700.2	protein_coding			FBD / Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G01795.1	long_noncoding_rna			None;(source:Araport11)
AT4G14640.2	protein_coding		encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1). Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms.	calmodulin 8;(source:Araport11)
AT2G42670.3	protein_coding			2-aminoethanethiol dioxygenase, putative (DUF1637);(source:Araport11)
AT3G59310.3	protein_coding			solute carrier family 35 protein (DUF914);(source:Araport11)
AT1G63530.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G26910.2	protein_coding			Ribosomal protein L16p/L10e family protein;(source:Araport11)
AT5G49450.uORF1	uORF			Derives_from AT5G49450;(source:Araport11)
AT1G54575.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G19025.2	protein_coding			Ribosomal protein L34e superfamily protein;(source:Araport11)
AT2G38780.12	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT4G03765.1	long_noncoding_rna			None;(source:Araport11)
AT3G54480.3	protein_coding		Encodes an SKP1 interacting partner (SKIP5).	SKP1/ASK-interacting protein 5;(source:Araport11)
AT2G38780.11	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT3G28370.2	protein_coding			spindle assembly checkpoint component;(source:Araport11)
AT3G28370.3	protein_coding			spindle assembly checkpoint component;(source:Araport11)
AT2G08085.1	long_noncoding_rna			None;(source:Araport11)
AT1G01030.2	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G31550.1	protein_coding			replication protein A1;(source:Araport11)
AT3G28370.4	protein_coding			spindle assembly checkpoint component;(source:Araport11)
AT3G28370.5	protein_coding			spindle assembly checkpoint component;(source:Araport11)
AT1G31950.3	protein_coding			Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT5G61920.6	protein_coding			FLX-like protein;(source:Araport11)
AT1G06513.1	long_noncoding_rna			None;(source:Araport11)
AT5G00855.1	long_noncoding_rna			None;(source:Araport11)
AT4G08510.2	protein_coding			mediator of RNA polymerase II transcription subunit-like protein;(source:Araport11)
AT4G07205.1	long_noncoding_rna			None;(source:Araport11)
AT5G17460.4	protein_coding			glutamyl-tRNA (Gln) amidotransferase subunit C;(source:Araport11)
AT5G17460.5	protein_coding			glutamyl-tRNA (Gln) amidotransferase subunit C;(source:Araport11)
AT5G17460.3	protein_coding			glutamyl-tRNA (Gln) amidotransferase subunit C;(source:Araport11)
AT5G16180.2	protein_coding		Promotes the splicing of chloroplast group II introns. Splices atpF introns.	maize chloroplast splicing factor-like protein;(source:Araport11)
AT4G08590.6	protein_coding			ORTHRUS-like protein;(source:Araport11)
AT3G08695.1	small_nuclear_rna			U2;(source:Araport11)
AT1G78000.7	protein_coding		Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.	sulfate transporter 1;(source:Araport11)
AT1G78000.6	protein_coding		Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.	sulfate transporter 1;(source:Araport11)
AT1G78000.5	protein_coding		Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.	sulfate transporter 1;(source:Araport11)
AT1G78000.4	protein_coding		Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.	sulfate transporter 1;(source:Araport11)
AT1G78000.3	protein_coding		Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.	sulfate transporter 1;(source:Araport11)
AT4G09525.1	long_noncoding_rna			None;(source:Araport11)
AT4G00070.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G35340.6	protein_coding			ATP-dependent protease La (LON) domain protein;(source:Araport11)
AT2G17320.2	protein_coding			pantothenate kinase;(source:Araport11)
AT4G05660.1	long_noncoding_rna			None;(source:Araport11)
AT4G31170.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G31170.7	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G20120.4	protein_coding			cytochrome P450, family 705, subfamily A, polypeptide 21;(source:Araport11)
AT3G13782.2	protein_coding		Plants mutated in three ubiquitously expressed NAP1 genes (NAP1;1~NAP1;3) and organ-specifically expressed NAP1;4 gene show hypersensitivity to genotoxic stresses including UV and DSB-inducing agent Bleomycin. The NAP1 genes act synergistically with NRP genes in promoting somatic homologous recombination.	nucleosome assembly protein1;(source:Araport11)
AT4G01770.2	protein_coding		Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the <i>O</i>-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT1 protein might be involved in the synthesis of the &alpha;-D-Xyl-(1,3)-&alpha;-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II.	rhamnogalacturonan xylosyltransferase 1;(source:Araport11)
AT2G46455.4	protein_coding			OxaA/YidC-like membrane insertion protein;(source:Araport11)
AT2G46455.3	protein_coding			OxaA/YidC-like membrane insertion protein;(source:Araport11)
AT2G46455.2	protein_coding			OxaA/YidC-like membrane insertion protein;(source:Araport11)
AT4G12990.8	protein_coding			transmembrane protein;(source:Araport11)
AT2G38920.6	protein_coding			SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein;(source:Araport11)
AT1G11280.5	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT3G54085.3	protein_coding			Yos1-like protein;(source:Araport11)
AT1G07553.1	long_noncoding_rna			None;(source:Araport11)
AT5G09300.4	protein_coding			Thiamin diphosphate-binding fold (THDP-binding) superfamily protein;(source:Araport11)
AT4G31170.9	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G62085.2	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT4G28162.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G28160;(source:Araport11)
AT4G28162.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G28160;(source:Araport11)
AT4G31170.8	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G07225.1	long_noncoding_rna			None;(source:Araport11)
AT1G31095.1	protein_coding			lactate/malate dehydrogenase, NAD-binding domain protein;(source:Araport11)
AT5G45300.3	protein_coding		Encodes a beta-amylase-like protein present in the nucleus rather than targeted to the chloroplast. Contains BRASSINAZOLE RESISTANT1 (BZR1)-type DNA binding domains.  Activates gene expression in protoplast transactivation assays.	beta-amylase 2;(source:Araport11)
AT2G25125.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G00780.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G01580;(source:Araport11)
AT5G00780.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G01580;(source:Araport11)
AT5G00780.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G01580;(source:Araport11)
AT4G28730.2	protein_coding		Encodes a glutaredoxin GrxC5. GrxC5 exists as two forms when expressed in Escherichia coli. The monomeric apoprotein possesses deglutathionylation activity mediating the recycling of plastidial methionine sulfoxide reductase B1 and peroxiredoxin IIE, whereas the dimeric holoprotein incorporates a [2Fe-2S] cluster.	Glutaredoxin family protein;(source:Araport11)
AT4G07225.1	long_noncoding_rna			None;(source:Araport11)
AT5G04745.1	long_noncoding_rna			None;(source:Araport11)
AT4G03500.3	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT2G00630.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00630.5	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00630.6	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G09305.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G41710;(source:Araport11)
AT2G00630.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G04095.1	miRNA_primary_transcript			microRNA ath-MIR5635d precursor;(source:Araport11)
AT1G76580.3	protein_coding			Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein;(source:Araport11)
AT5G00760.1	small_nucleolar_rna			None;(source:Araport11)
AT5G14670.3	protein_coding		A member of ARF GTPase family. Arabidopsis has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor DcARF1 (GI:965483) (Daucus carota), other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	ADP-ribosylation factor A1B;(source:Araport11)
AT1G07293.1	long_noncoding_rna			None;(source:Araport11)
AT2G19930.2	protein_coding			RNA-dependent RNA polymerase family protein;(source:Araport11)
AT5G47160.3	protein_coding			YDG/SRA domain-containing protein;(source:Araport11)
AT5G01675.5	antisense_long_noncoding_rna		Small RNA-induced heterochromatic region at the end of FLC which produces cold-induced FLC antisense lncRNA transcripts. Represses FLOWERING LOCUS C (FLC) transcription with increased H3K27me3 and decreased H3K36me3 levels in response to cold temperatures. FCA binding of COOLAIR and SSU72 is critical for PRC2 enrichment and H3K27me3 deposition.	Natural antisense transcript overlaps with AT5G10140 (FLC);(source:Araport11)
AT3G20120.3	protein_coding			cytochrome P450, family 705, subfamily A, polypeptide 21;(source:Araport11)
AT2G00650.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G37380.9	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G37380.8	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G01675.3	antisense_long_noncoding_rna		Small RNA-induced heterochromatic region at the end of FLC which produces cold-induced FLC antisense lncRNA transcripts. Represses FLOWERING LOCUS C (FLC) transcription with increased H3K27me3 and decreased H3K36me3 levels in response to cold temperatures. FCA binding of COOLAIR and SSU72 is critical for PRC2 enrichment and H3K27me3 deposition.	Natural antisense transcript overlaps with AT5G10140 (FLC);(source:Araport11)
AT5G01675.2	antisense_long_noncoding_rna		Small RNA-induced heterochromatic region at the end of FLC which produces cold-induced FLC antisense lncRNA transcripts. Represses FLOWERING LOCUS C (FLC) transcription with increased H3K27me3 and decreased H3K36me3 levels in response to cold temperatures. FCA binding of COOLAIR and SSU72 is critical for PRC2 enrichment and H3K27me3 deposition.	Natural antisense transcript overlaps with AT5G10140 (FLC);(source:Araport11)
AT5G37380.7	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G37380.6	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G66920.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G35410.2	protein_coding		encodes a member of the CBL-interacting protein kinase family, is a regulatory component controlling plant potassium nutrition	Protein kinase superfamily protein;(source:Araport11)
AT3G08405.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G54500;(source:Araport11)
AT3G07915.1	long_noncoding_rna			None;(source:Araport11)
AT4G03090.3	protein_coding			sequence-specific DNA binding transcription factor ATNDX;(source:Araport11)
AT5G24155.3	protein_coding			FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT1G53800.3	protein_coding			muscle M-line assembly protein;(source:Araport11)
AT1G53800.4	protein_coding			muscle M-line assembly protein;(source:Araport11)
AT5G15265.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G53350.7	protein_coding		Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.	ROP interactive partner 4;(source:Araport11)
AT5G05445.1	long_noncoding_rna			None;(source:Araport11)
AT2G16920.2	protein_coding			ubiquitin-conjugating enzyme 23;(source:Araport11)
AT3G11080.2	protein_coding			receptor like protein 35;(source:Araport11)
AT3G02455.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G11560;(source:Araport11)
AT3G02455.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G11560;(source:Araport11)
AT3G02455.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G11560;(source:Araport11)
AT2G08870.1	long_noncoding_rna			None;(source:Araport11)
AT3G06585.1	long_noncoding_rna			None;(source:Araport11)
AT1G34160.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G47900.9	protein_coding			heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G45650.2	protein_coding			subtilase family protein;(source:Araport11)
AT2G22630.2	protein_coding		Encodes a MADs domain containing protein involved in promoting flowering. Loss of function mutations show delayed flowering in long days and reduced levels of LFY and AP1 expression.	AGAMOUS-like 17;(source:Araport11)
AT4G31170.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G55755.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G14520.4	protein_coding			CBS domain protein (DUF21);(source:Araport11)
AT2G16940.5	protein_coding			Splicing factor, CC1-like protein;(source:Araport11)
AT3G29170.2	protein_coding			transmembrane protein (DUF872);(source:Araport11)
AT5G08865.1	small_nucleolar_rna			None;(source:Araport11)
AT4G15790.2	protein_coding			uveal autoantigen with coiled-coil/ankyrin;(source:Araport11)
AT1G05057.1	small_nuclear_rna			U2;(source:Araport11)
AT2G39400.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G02615.1	long_noncoding_rna			None;(source:Araport11)
AT1G02860.3	protein_coding		Encodes a ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses and mediates degradation of PHT1s at plasma membranes.  Targeted by MIR827. Ubiquitinates PHT1;3, PHT1;2, PHT1;1/AtPT1 and PHT1;4/AtPT2.	SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT5G52550.uORF1	uORF			Derives_from AT5G52550;(source:Araport11)
AT1G31810.2	protein_coding		Encodes the Type II Arabidopsis formin14.  Interacts with microtubules and microfilaments to regulate cell division.	Formin Homology 14;(source:Araport11)
AT4G05910.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G11660;(source:Araport11)
AT3G07545.1	long_noncoding_rna			None;(source:Araport11)
AT2G46020.6	protein_coding		Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.	transcription regulatory protein SNF2;(source:Araport11)
AT2G46020.5	protein_coding		Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.	transcription regulatory protein SNF2;(source:Araport11)
AT2G46020.4	protein_coding		Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.	transcription regulatory protein SNF2;(source:Araport11)
AT2G21940.7	protein_coding		Encodes a shikimate kinase. Its transcripts appear to be expressed most highly in mature embryos and senescing leaves, and its transcript levels rise during heat stress and recovery. It is believed to be localized to the chloroplast.	shikimate kinase 1;(source:Araport11)
AT1G20880.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G30120.3	protein_coding			protein FLC EXPRESSOR;(source:Araport11)
AT3G63370.2	protein_coding		Encodes a chloroplast RNA editing factor.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G30120.6	protein_coding			protein FLC EXPRESSOR;(source:Araport11)
AT2G03680.3	protein_coding		The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.	spiral1;(source:Araport11)
AT2G30120.4	protein_coding			protein FLC EXPRESSOR;(source:Araport11)
AT2G31130.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G09633.1	long_noncoding_rna			None;(source:Araport11)
AT1G06250.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G04015.1	long_noncoding_rna			None;(source:Araport11)
AT3G54040.2	protein_coding			PAR1 protein;(source:Araport11)
AT4G04965.1	long_noncoding_rna			None;(source:Araport11)
AT1G04143.1	long_noncoding_rna			None;(source:Araport11)
AT1G54957.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G58230.2	protein_coding			binding protein;(source:Araport11)
AT1G16610.6	protein_coding		Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.  Also involved in plant sugar response.  sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.	arginine/serine-rich 45;(source:Araport11)
AT1G16610.7	protein_coding		Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.  Also involved in plant sugar response.  sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.	arginine/serine-rich 45;(source:Araport11)
AT1G16610.4	protein_coding		Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.  Also involved in plant sugar response.  sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.	arginine/serine-rich 45;(source:Araport11)
AT1G16610.5	protein_coding		Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.  Also involved in plant sugar response.  sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.	arginine/serine-rich 45;(source:Araport11)
AT3G04805.1	long_noncoding_rna			None;(source:Araport11)
AT4G05770.1	long_noncoding_rna			None;(source:Araport11)
AT3G06265.1	long_noncoding_rna			None;(source:Araport11)
AT5G26667.4	protein_coding		encodes a uridine 5 Prime-monophosphate (UMP)/cytidine 5 Prime-monophosphate (CMP) kinase.The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G45190.3	protein_coding		Encodes a cyclin T partner CYCT1;5.  Plays important roles in infection with Cauliflower mosaic virus (CaMV).	Cyclin family protein;(source:Araport11)
AT1G05710.6	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G49920.2	protein_coding			MuDR family transposase;(source:Araport11)
AT2G30480.12	protein_coding			hypothetical protein;(source:Araport11)
AT4G06340.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G15820;(source:Araport11)
AT3G45750.3	protein_coding			Nucleotidyltransferase family protein;(source:Araport11)
AT1G08060.3	protein_coding		Encodes a transcriptional silencer that is required for proper expression of PRR/NLR immune receptor genes.	ATP-dependent helicase family protein;(source:Araport11)
AT1G09195.14	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT1G09195.15	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT1G09195.12	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT1G09195.13	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT1G09195.10	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT1G09195.11	protein_coding			Ppx-GppA phosphatase;(source:Araport11)
AT3G08100.1	long_noncoding_rna			None;(source:Araport11)
AT4G05680.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G08940;(source:Araport11)
AT5G00700.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G30480.11	protein_coding			hypothetical protein;(source:Araport11)
AT3G46960.3	protein_coding		The gene encodes a DExD&#8260;H box RNA helicase, involved in the regulation of K+ deprivation stress response.SKI2 encodes the RNA helicase subunit of the SKI complex. Mutation of SKI2 leads to production of secondary siRNAs from miRNA target transcripts	RNA helicase, ATP-dependent, SK12/DOB1 protein;(source:Araport11)
AT3G46960.2	protein_coding		The gene encodes a DExD&#8260;H box RNA helicase, involved in the regulation of K+ deprivation stress response.SKI2 encodes the RNA helicase subunit of the SKI complex. Mutation of SKI2 leads to production of secondary siRNAs from miRNA target transcripts	RNA helicase, ATP-dependent, SK12/DOB1 protein;(source:Araport11)
AT1G05153.1	long_noncoding_rna			None;(source:Araport11)
AT1G08487.1	long_noncoding_rna			None;(source:Araport11)
AT5G22460.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G23860.3	protein_coding		Encodes a GTP-binding related protein that acts as a negative regulator of pollen germination, pollen tube growth, and gametophyte senescence.	GTP-binding protein-like protein;(source:Araport11)
AT3G23860.2	protein_coding		Encodes a GTP-binding related protein that acts as a negative regulator of pollen germination, pollen tube growth, and gametophyte senescence.	GTP-binding protein-like protein;(source:Araport11)
AT5G11600.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G34460.8	protein_coding		B1 type cyclin	CYCLIN B1;(source:Araport11)
AT4G13960.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G66980.3	protein_coding		Encodes SNC4 (suppressor of npr1-1, constitutive 4), an atypical receptor-like kinase with two predicted extracellular glycerophosphoryl diester phosphodiesterase domains.	suppressor of npr1-1 constitutive 4;(source:Araport11)
AT1G66980.2	protein_coding		Encodes SNC4 (suppressor of npr1-1, constitutive 4), an atypical receptor-like kinase with two predicted extracellular glycerophosphoryl diester phosphodiesterase domains.	suppressor of npr1-1 constitutive 4;(source:Araport11)
AT1G66980.4	protein_coding		Encodes SNC4 (suppressor of npr1-1, constitutive 4), an atypical receptor-like kinase with two predicted extracellular glycerophosphoryl diester phosphodiesterase domains.	suppressor of npr1-1 constitutive 4;(source:Araport11)
AT5G03955.1	long_noncoding_rna			None;(source:Araport11)
AT2G44880.4	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G04857.1	long_noncoding_rna			None;(source:Araport11)
AT1G08463.1	long_noncoding_rna			None;(source:Araport11)
AT2G46572.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G46570;(source:Araport11)
AT5G09300.3	protein_coding			Thiamin diphosphate-binding fold (THDP-binding) superfamily protein;(source:Araport11)
AT1G01950.4	protein_coding		Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.	armadillo repeat kinesin 2;(source:Araport11)
AT2G46572.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G46570;(source:Araport11)
AT5G11210.9	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.5;(source:Araport11)
AT5G11210.8	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.5;(source:Araport11)
AT5G03935.1	long_noncoding_rna			None;(source:Araport11)
AT3G08485.1	small_nucleolar_rna			None;(source:Araport11)
AT2G06835.1	long_noncoding_rna			None;(source:Araport11)
AT5G11210.2	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.5;(source:Araport11)
AT5G11210.7	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.5;(source:Araport11)
AT2G08905.1	small_nucleolar_rna			None;(source:Araport11)
AT5G11210.5	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.5;(source:Araport11)
AT1G04013.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G01170;(source:Araport11)
AT1G18950.3	protein_coding			DDT domain superfamily;(source:Araport11)
AT1G18950.2	protein_coding			DDT domain superfamily;(source:Araport11)
AT2G07680.2	protein_coding		Encodes ABCC13/MRP11, a member of the multidrug resistance associated protein MRP/ABCC subfamily. Its expression is induced by gibberellic acid and downregulated by naphthalene acetic acid, abscisic acid, and zeatin.	multidrug resistance-associated protein 11;(source:Araport11)
AT5G10965.5	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT1G62975.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G09747.1	long_noncoding_rna			None;(source:Araport11)
AT2G07680.3	protein_coding		Encodes ABCC13/MRP11, a member of the multidrug resistance associated protein MRP/ABCC subfamily. Its expression is induced by gibberellic acid and downregulated by naphthalene acetic acid, abscisic acid, and zeatin.	multidrug resistance-associated protein 11;(source:Araport11)
AT3G44530.3	protein_coding		Encodes a nuclear localized WD-repeat containing protein involved in negative regulation of knox gene expression via epigenetic mechanism of chromatin re-organization. It is a part of the HISTONE REGULATOR complex that deposits histones in a DNA synthesis-independent manner and affects both nucleosome occupancy and the maintenance of transcriptional silencing. Interacts physically and genetically with AS1. Expressed in meristem and leaf primordia. Homozygous mutants are embryo lethal. Phenotype of cosuppressed lines is variable but show effects on leaf development similar to as1/as2.	histone chaperone HIRA-like protein;(source:Araport11)
AT1G56720.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G14870.4	protein_coding			hypothetical protein (DUF641);(source:Araport11)
AT5G02635.1	long_noncoding_rna			None;(source:Araport11)
AT5G38397.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G06290.2	protein_coding		Encodes a component of the conserved TREX-2 complex that couples mRNA transcription with nucleo-cytoplasmic export, that is required for prevention of epigenetic gene silencing and has additional roles in regulating siRNAs and DNA methylation.	SAC3/GANP/Nin1/mts3/eIF-3 p25 family;(source:Araport11)
AT2G46560.2	protein_coding			transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G46560.3	protein_coding			transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT4G09080.3	protein_coding		Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Knockout mutants have abnormal etioplasts.	Outer membrane OMP85 family protein;(source:Araport11)
AT1G15950.3	protein_coding		Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.The mRNA is cell-to-cell mobile.	cinnamoyl coa reductase 1;(source:Araport11)
AT1G15950.4	protein_coding		Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.The mRNA is cell-to-cell mobile.	cinnamoyl coa reductase 1;(source:Araport11)
AT1G15950.5	protein_coding		Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.The mRNA is cell-to-cell mobile.	cinnamoyl coa reductase 1;(source:Araport11)
AT1G15950.6	protein_coding		Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.The mRNA is cell-to-cell mobile.	cinnamoyl coa reductase 1;(source:Araport11)
AT1G15950.7	protein_coding		Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.The mRNA is cell-to-cell mobile.	cinnamoyl coa reductase 1;(source:Araport11)
AT1G05950.5	protein_coding			hypothetical protein;(source:Araport11)
AT1G04807.1	long_noncoding_rna			None;(source:Araport11)
AT1G36627.1	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT5G10965.4	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT4G27220.2	protein_coding			NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT3G03315.1	novel_transcribed_region			novel transcribed region; detected in root, root apical meristem, dark-grown seedling, light-grown seedling, aerial;(source:Araport11)
AT5G36300.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G08497.1	long_noncoding_rna			None;(source:Araport11)
AT1G24510.3	protein_coding			TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT3G11010.2	protein_coding			receptor like protein 34;(source:Araport11)
AT2G33980.2	protein_coding			nudix hydrolase homolog 22;(source:Araport11)
AT2G33980.3	protein_coding			nudix hydrolase homolog 22;(source:Araport11)
AT2G33980.4	protein_coding			nudix hydrolase homolog 22;(source:Araport11)
AT1G06247.1	small_nucleolar_rna			None;(source:Araport11)
AT3G23330.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G19970.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G19970.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G19970.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G19970.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G35900.2	protein_coding			Mal d 1-associated protein;(source:Araport11)
AT1G08905.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G25560.2	protein_coding		LAF1 is a R2R3-MYB transcription factor and positive regulator of the phyA photoresponse. Interaction of LAF1 with HFR1 stabilize the proteins against ubiquitination by COP1(AT2G32950) and subsequent degrations. Mutants have an elongated hypocotyl specifically under far-red light but retain wild-type responses to other light wavelengths.	myb domain protein 18;(source:Araport11)
AT3G16030.2	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT4G05040.6	protein_coding			ankyrin repeat family protein;(source:Araport11)
AT4G05040.7	protein_coding			ankyrin repeat family protein;(source:Araport11)
AT2G09330.1	long_noncoding_rna			None;(source:Araport11)
AT4G18070.5	protein_coding			suppressor;(source:Araport11)
AT4G23373.1	protein_coding			carboxyl-terminal peptidase;(source:Araport11)
AT4G18070.6	protein_coding			suppressor;(source:Araport11)
AT3G08435.1	long_noncoding_rna			None;(source:Araport11)
AT1G15060.2	protein_coding			alpha/beta hydrolase family protein;(source:Araport11)
AT1G15060.3	protein_coding			alpha/beta hydrolase family protein;(source:Araport11)
AT3G59910.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT4G34020.4	protein_coding		Encodes a homolog of animal DJ-1 superfamily protein.  In the A. thaliana genome, three genes encoding close homologs of human DJ-1 were identified AT3G14990 (DJ1A), AT1G53280 (DJ1B) and AT4G34020 (DJ1C).  Among the three homologs, DJ1C is essential for chloroplast development and viability.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT3G07075.1	long_noncoding_rna			None;(source:Araport11)
AT2G21230.4	protein_coding		bZIP30 is a transcriptional activator that is involved in regulation of growth and development of reproductive organs. It interacts with a number of developmental regulators including WUS, HEC1, KNAT1/BP, KNAT2, JAB, BEL1, and NGA1.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT3G08760.2	protein_coding		Encodes an osmotic stress-inducible kinase that functions as a negative regulator of osmotic stress signaling in plants.	Protein kinase superfamily protein;(source:Araport11)
AT2G46810.2	protein_coding		MYC-type transcription factor which interacts with ICE1 and negatively regulates cold-responsive genes and cold tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G49500.2	protein_coding		Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance.Loss of function mutants produce ectopic megaspore mother cell and supernumary female gametophytes.	RNA-dependent RNA polymerase 6;(source:Araport11)
AT3G49500.3	protein_coding		Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance.Loss of function mutants produce ectopic megaspore mother cell and supernumary female gametophytes.	RNA-dependent RNA polymerase 6;(source:Araport11)
AT3G49500.4	protein_coding		Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance.Loss of function mutants produce ectopic megaspore mother cell and supernumary female gametophytes.	RNA-dependent RNA polymerase 6;(source:Araport11)
AT3G49500.5	protein_coding		Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance.Loss of function mutants produce ectopic megaspore mother cell and supernumary female gametophytes.	RNA-dependent RNA polymerase 6;(source:Araport11)
AT4G05215.1	long_noncoding_rna			None;(source:Araport11)
AT4G15390.2	protein_coding			HXXXD-type acyl-transferase family protein;(source:Araport11)
AT3G03475.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G17390;(source:Araport11)
AT4G21610.2	protein_coding		Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains.	lsd one like 2;(source:Araport11)
AT5G44660.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G54820.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G29631.1	protein_coding			nuclease;(source:Araport11)
AT1G53900.3	protein_coding			Eukaryotic translation initiation factor 2B (eIF-2B) family protein;(source:Araport11)
AT1G53900.2	protein_coding			Eukaryotic translation initiation factor 2B (eIF-2B) family protein;(source:Araport11)
AT5G42870.3	protein_coding		The PAH2 gene encodes a phosphatidate phosphohydrolase. Mutant analysis revealed its involvement in galactolipid synthesis pathway, and the membrane lipid remodeling. The pah1pah2 double-mutant showed enhanced Al-susceptibility under low-P conditions, but there was no significant differences in Al tolerance between pah1pah2 and wild type when they were grown in a solution containing 35 &#956;M Pi.	phosphatidic acid phosphohydrolase 2;(source:Araport11)
AT5G04490.2	protein_coding		Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis.	phytol kinase 1 VTE5;(source:Araport11)
AT1G62130.2	protein_coding			AAA-type ATPase family protein;(source:Araport11)
AT5G52460.2	protein_coding			FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT2G19620.3	protein_coding			N-MYC downregulated-like 3;(source:Araport11)
AT1G28680.2	protein_coding		Catalyses trans-cis isomerization and  lactonization in the biosynthesis of coumarins in roots.	HXXXD-type acyl-transferase family protein;(source:Araport11)
AT4G34020.3	protein_coding		Encodes a homolog of animal DJ-1 superfamily protein.  In the A. thaliana genome, three genes encoding close homologs of human DJ-1 were identified AT3G14990 (DJ1A), AT1G53280 (DJ1B) and AT4G34020 (DJ1C).  Among the three homologs, DJ1C is essential for chloroplast development and viability.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT2G47010.3	protein_coding			calcium/calcium/calmodulin-dependent Serine/Threonine-kinase;(source:Araport11)
AT3G29390.2	protein_coding		Nuclear localized K-homology containing protein that interacts with AS1.	RS2-interacting KH protein;(source:Araport11)
AT2G37170.2	protein_coding		a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev	plasma membrane intrinsic protein 2;(source:Araport11)
AT3G44970.2	protein_coding			Cytochrome P450 superfamily protein;(source:Araport11)
AT5G00455.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G04585.1	long_noncoding_rna			None;(source:Araport11)
AT1G10610.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G10610.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G09955.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G04403.1	long_noncoding_rna			None;(source:Araport11)
AT3G26932.3	protein_coding			dsRNA-binding protein 3;(source:Araport11)
AT3G01855.1	long_noncoding_rna			None;(source:Araport11)
AT4G09805.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, dark-grown seedling, light-grown seedling, flower, pollen;(source:Araport11)
AT5G67170.3	protein_coding			SEC-C motif-containing protein / OTU-like cysteine protease family protein;(source:Araport11)
AT2G45900.3	protein_coding			Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT2G45900.2	protein_coding			Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT1G76580.2	protein_coding			Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein;(source:Araport11)
AT1G49880.2	protein_coding		Encodes Erv1, a component of the mitochondrial intermembrane space assembly machinery involved in the import pathway of the small intermembrane space proteins.  It contains a Cys-X-Cys shuttle disulfide and oxidizes thioredoxin in vitro.	Erv1/Alr family protein;(source:Araport11)
AT5G00615.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00615.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G05710.14	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G20995.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G05710.12	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G05710.11	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G05710.10	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G30122.4	pseudogene		pseudogene similar to peptide chain release factor protein	pseudogene of Peptide chain release factor 2;(source:Araport11)
AT5G14670.2	protein_coding		A member of ARF GTPase family. Arabidopsis has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor DcARF1 (GI:965483) (Daucus carota), other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	ADP-ribosylation factor A1B;(source:Araport11)
AT5G03030.2	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G28250.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G39660.3	protein_coding		Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.	cycling DOF factor 2;(source:Araport11)
AT1G73170.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G13320.2	protein_coding		Encodes an enzyme capable of conjugating amino acids to 4-substituted benzoates. 4-HBA (4-hydroxybenzoic acid) and pABA (4-aminobenzoate) may be targets of the enzyme in Arabidopsis, leading to the production of pABA-Glu, 4HBA-Glu, or other related compounds. This enzyme is involved in disease-resistance signaling. It is required for the accumulation of salicylic acid, activation of defense responses, and resistance to Pseudomonas syringae. Salicylic acid can decrease this enzyme Primes activity in vitro and may act as a competitive inhibitor. Expression of PBS3/GH3.12 can be detected in cotyledons, true leaves, hypocotyls, and occasionally in some parts of roots from 10-day-old seedlings.  No expression has been detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.	Auxin-responsive GH3 family protein;(source:Araport11)
AT1G73170.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G28250.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G02500.2	protein_coding		Encodes a protein with 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase activity. The enzyme has an absolute requirement for divalent cations (Mg2+ reaches the highest catalytic activity).	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT3G49155.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT3G51950.3	protein_coding		Contains single CCCH domain.	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT3G54150.2	protein_coding		Encodes a DNA methyltransferase required for pollen exine formation and male fertility via the regulation of callose wall and primexine formation.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G28225.1	protein_coding			aspartic proteinase CDR1-like protein;(source:Araport11)
AT5G03205.1	long_noncoding_rna			None;(source:Araport11)
AT1G06397.1	small_nucleolar_rna			None;(source:Araport11)
AT1G73390.7	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT1G23120.2	protein_coding			Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT3G58160.3	protein_coding		Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G58160.4	protein_coding		Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G26440.5	protein_coding		encodes a ureide permease, uptake assays in yeast mutants indicated the longer splice variant is a cellular importer for allantoin, uracil and xanthine	ureide permease 5;(source:Araport11)
AT1G26440.6	protein_coding		encodes a ureide permease, uptake assays in yeast mutants indicated the longer splice variant is a cellular importer for allantoin, uracil and xanthine	ureide permease 5;(source:Araport11)
AT1G26440.7	protein_coding		encodes a ureide permease, uptake assays in yeast mutants indicated the longer splice variant is a cellular importer for allantoin, uracil and xanthine	ureide permease 5;(source:Araport11)
AT1G26440.8	protein_coding		encodes a ureide permease, uptake assays in yeast mutants indicated the longer splice variant is a cellular importer for allantoin, uracil and xanthine	ureide permease 5;(source:Araport11)
AT3G06725.1	long_noncoding_rna			None;(source:Araport11)
AT2G42280.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G05715.1	small_nucleolar_rna			None;(source:Araport11)
AT1G07627.1	long_noncoding_rna			None;(source:Araport11)
AT3G00490.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G16030.3	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT3G00490.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G09605.1	long_noncoding_rna			None;(source:Araport11)
AT2G06785.1	long_noncoding_rna			None;(source:Araport11)
AT1G67070.3	protein_coding		Encodes a protein with phosphomannose isomerase activity that is involved in synthesis of ascorbic acid. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene Primes expression pattern is responding to the level of sugar in the cell.	Mannose-6-phosphate isomerase, type I;(source:Araport11)
AT3G59050.uORF1	uORF			Derives_from AT3G59050;(source:Araport11)
AT1G25340.3	protein_coding		putative transcription factor (MYB116)	myb domain protein 116;(source:Araport11)
AT3G25690.6	protein_coding		actin binding protein required for normal chloroplast positioningThe mRNA is cell-to-cell mobile.	Hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G25690.4	protein_coding		actin binding protein required for normal chloroplast positioningThe mRNA is cell-to-cell mobile.	Hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G12070.3	protein_coding			RAB geranylgeranyl transferase beta subunit 2;(source:Araport11)
AT3G12070.4	protein_coding			RAB geranylgeranyl transferase beta subunit 2;(source:Araport11)
AT1G07603.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G50010;(source:Araport11)
AT2G02760.2	protein_coding		ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene.	ubiquiting-conjugating enzyme 2;(source:Araport11)
AT2G02760.3	protein_coding		ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene.	ubiquiting-conjugating enzyme 2;(source:Araport11)
AT2G35965.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G33840.2	protein_coding			LURP-one-like protein (DUF567);(source:Araport11)
AT1G06257.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G29420;(source:Araport11)
AT5G09545.1	long_noncoding_rna			None;(source:Araport11)
AT3G26350.2	protein_coding			proline-rich receptor-like kinase;(source:Araport11)
AT1G53330.2	protein_coding		encodes a member of the pentatricopeptide repeat (PPR) gene family. T-DNA insertion mutants had a complex phenotypic expression, ranging from embryo lethal to seedling lethal, to just subtle changes.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G78870.4	protein_coding		UBC35/UBC13A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UBC35/UBC13A can form diubiquitin and triubiquitin chains in combination with MMZ1,2,3,4/(UEV1A,B,C,D) in vitro. It can also functionally complement an mms2 ubc13 mutation in budding yeast by increasing the double mutant Primes viability in the presence of the DNA damaging agent MMS, when it is co-expressed with MMZ / UEV1 genes. A wild type phenotype is restored with MMZ3/UEV1C and MMZ4/UEV1D, but only partial complementation is achieved with MMZ1/UEV1A or MMZ2/UEV1B.The mRNA is cell-to-cell mobile.	ubiquitin-conjugating enzyme 35;(source:Araport11)
AT1G34317.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15430.uORF1	uORF			Derives_from AT3G15430;(source:Araport11)
AT3G50660.2	protein_coding		Encodes a 22&#945; hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele  with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively  regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.	Cytochrome P450 superfamily protein;(source:Araport11)
AT4G01320.3	protein_coding		CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum.	Peptidase family M48 family protein;(source:Araport11)
AT4G01320.2	protein_coding		CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum.	Peptidase family M48 family protein;(source:Araport11)
AT1G29000.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G16510.2	protein_coding			YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein;(source:Araport11)
AT4G07125.1	long_noncoding_rna			None;(source:Araport11)
AT5G15130.2	protein_coding		member of WRKY Transcription Factor; Group II-b; contribute to basal immunity.The mRNA is cell-to-cell mobile.	WRKY DNA-binding protein 72;(source:Araport11)
AT1G07417.1	long_noncoding_rna			None;(source:Araport11)
AT5G23010.2	protein_coding		Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates.The mRNA is cell-to-cell mobile.	methylthioalkylmalate synthase 1;(source:Araport11)
AT5G23010.3	protein_coding		Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates.The mRNA is cell-to-cell mobile.	methylthioalkylmalate synthase 1;(source:Araport11)
AT2G09485.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial;(source:Araport11)
AT1G28060.2	protein_coding			Pre-mRNA-splicing factor 3;(source:Araport11)
AT1G28060.3	protein_coding			Pre-mRNA-splicing factor 3;(source:Araport11)
AT4G16920.9	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G04635.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G24200;(source:Araport11)
AT1G35250.3	protein_coding			Thioesterase superfamily protein;(source:Araport11)
AT1G06710.7	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G16920.5	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16920.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16920.7	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16920.6	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16920.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16920.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G08120.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G25170;(source:Araport11)
AT5G24318.4	protein_coding			O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G18960.2	protein_coding			FAR1-related sequence 12;(source:Araport11)
AT5G24318.3	protein_coding			O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G01710.uORF1	uORF			Derives_from AT5G01710;(source:Araport11)
AT3G29250.3	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G61700.4	protein_coding			helicase with zinc finger protein;(source:Araport11)
AT5G59220.2	protein_coding		Encodes a member of the PP2C family (Clade A protein phosphatases type 2C). Functions as a negative regulator of osmotic stress and ABA signaling.	PP2C protein (Clade A protein phosphatases type 2C);(source:Araport11)
AT4G00970.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 41;(source:Araport11)
AT3G61700.3	protein_coding			helicase with zinc finger protein;(source:Araport11)
AT5G51460.4	protein_coding		homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G51460.5	protein_coding		homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G28570.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G09675.1	long_noncoding_rna			None;(source:Araport11)
AT1G21240.2	protein_coding		encodes a wall-associated kinaseThe mRNA is cell-to-cell mobile.	wall associated kinase 3;(source:Araport11)
AT4G21120.2	protein_coding		Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system.The mRNA is cell-to-cell mobile.	amino acid transporter 1;(source:Araport11)
AT2G40995.2	protein_coding		Encodes a defensin-like (DEFL) family protein.	Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT1G06620.2	protein_coding		encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenaseThe mRNA is cell-to-cell mobile.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G07015.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G17972;(source:Araport11)
AT1G19430.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G25850.3	protein_coding			OSBP(oxysterol binding protein)-related protein 4B;(source:Araport11)
AT5G54790.2	protein_coding			CTD small phosphatase-like protein;(source:Araport11)
AT2G08915.1	antisense_rna			Natural antisense transcript overlaps with AT2G37970;(source:Araport11)
AT1G08965.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G27730.3	protein_coding		DNA helicase required for interference-sensitive meiotic crossover events.	DNA helicase ROCK-N-ROLLERS;(source:Araport11)
AT4G34960.2	protein_coding			Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G27730.2	protein_coding		DNA helicase required for interference-sensitive meiotic crossover events.	DNA helicase ROCK-N-ROLLERS;(source:Araport11)
AT1G08040.3	protein_coding			trimethylguanosine synthase (DUF707);(source:Araport11)
AT1G08040.4	protein_coding			trimethylguanosine synthase (DUF707);(source:Araport11)
AT4G19130.2	protein_coding			Replication factor-A protein 1-like protein;(source:Araport11)
AT1G03550.5	protein_coding			Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT3G43860.2	protein_coding			glycosyl hydrolase 9A4;(source:Araport11)
AT4G29240.2	protein_coding			Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G06955.1	long_noncoding_rna			None;(source:Araport11)
AT1G09525.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G06710.8	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G55080.4	protein_coding			SET domain-containing protein;(source:Araport11)
AT1G09543.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G75180;(source:Araport11)
AT2G20850.2	protein_coding			STRUBBELIG-receptor family 1;(source:Araport11)
AT3G55080.3	protein_coding			SET domain-containing protein;(source:Araport11)
AT5G06735.1	long_noncoding_rna			None;(source:Araport11)
AT5G16900.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G27765.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G04925.1	long_noncoding_rna			None;(source:Araport11)
AT5G16900.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G23060.5	protein_coding			hypothetical protein;(source:Araport11)
AT2G08490.1	long_noncoding_rna			None;(source:Araport11)
AT3G27730.4	protein_coding		DNA helicase required for interference-sensitive meiotic crossover events.	DNA helicase ROCK-N-ROLLERS;(source:Araport11)
AT4G03105.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G66880.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G00840.1	long_noncoding_rna			None;(source:Araport11)
AT1G63350.3	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G63350.2	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G63350.4	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT4G26795.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G26790;(source:Araport11)
AT4G26795.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G26790;(source:Araport11)
AT4G26795.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G26790;(source:Araport11)
AT3G45240.uORF1	uORF			Derives_from AT3G45240;(source:Araport11)
AT5G08030.2	protein_coding		Encodes a member of the glycerophosphodiester phosphodiesterase (GDPD) family.	PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT2G20950.13	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G20950.12	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G20950.11	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G20950.10	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT3G60450.2	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT2G29960.3	protein_coding		encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.	cyclophilin 5;(source:Araport11)
AT2G20950.14	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G07895.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G27730;(source:Araport11)
AT1G50990.2	protein_coding			kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT3G03175.1	small_nucleolar_rna			None;(source:Araport11)
AT3G05635.1	long_noncoding_rna			None;(source:Araport11)
AT4G36840.2	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G09765.1	long_noncoding_rna			None;(source:Araport11)
AT4G03665.1	long_noncoding_rna			None;(source:Araport11)
AT3G20870.3	protein_coding			ZIP metal ion transporter family;(source:Araport11)
AT3G20870.2	protein_coding			ZIP metal ion transporter family;(source:Araport11)
AT3G18640.3	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G05335.1	long_noncoding_rna			None;(source:Araport11)
AT1G03470.4	protein_coding		Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the nuclear membrane and the vacuolar membrane.	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT4G04135.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G02450;(source:Araport11)
AT1G09545.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G65420.4	protein_coding		Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.	CYCLIN D4;(source:Araport11)
AT4G28000.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G28000.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G06285.1	long_noncoding_rna			None;(source:Araport11)
AT4G35030.9	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G29930.5	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G29930.6	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G29930.7	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G00515.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G14285.1	protein_coding			DNA-binding storekeeper;(source:Araport11)
AT2G02010.2	protein_coding			glutamate decarboxylase 4;(source:Araport11)
AT1G07173.1	long_noncoding_rna			None;(source:Araport11)
AT5G26146.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G26150;(source:Araport11)
AT3G27997.4	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT1G07745.3	protein_coding		Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.	DNA repair RAD51-like protein;(source:Araport11)
AT1G06673.1	small_nucleolar_rna			None;(source:Araport11)
AT5G03855.1	novel_transcribed_region			novel transcribed region; detected in carpel, leaf, light-grown seedling;(source:Araport11)
AT1G04493.1	long_noncoding_rna			None;(source:Araport11)
AT5G00820.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G02150;(source:Araport11)
AT5G59270.3	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT4G24380.5	protein_coding			dihydrofolate reductase;(source:Araport11)
AT3G19010.4	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G74770.2	protein_coding			zinc ion binding protein;(source:Araport11)
AT5G41170.3	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT4G24380.6	protein_coding			dihydrofolate reductase;(source:Araport11)
AT1G67180.5	protein_coding			zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein;(source:Araport11)
AT2G27220.3	protein_coding			BEL1-like homeodomain 5;(source:Araport11)
AT2G45500.5	protein_coding			AAA-type ATPase family protein;(source:Araport11)
AT2G45500.4	protein_coding			AAA-type ATPase family protein;(source:Araport11)
AT5G07970.3	protein_coding			dentin sialophosphoprotein-like protein;(source:Araport11)
AT4G22305.2	protein_coding		Encodes SOBER1, a carboxylesterase that inhibits AvrBsT-triggered phenotypes in Arabidopsis. SOBER1 was formerly linked to AT4G22300 but this locus was split in the TAIR10 annotation into AT4G22300 and AT4G22305. AT4G22300 is now known as TIPSY1 and AT4G22305 corresponds to SOBER1.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G57480.2	protein_coding		SAP1  is a protein of unknown function whose expression is responsive to abiotic stressors including metals, salt, and ABA. Over expression confers increased tolerance to a variety of abiotic stressors.	zinc finger (C2H2 type, AN1-like) family protein;(source:Araport11)
AT2G45500.3	protein_coding			AAA-type ATPase family protein;(source:Araport11)
AT2G05165.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT5G19430.6	protein_coding		Encodes a C3HC4-type RING finger E3 ubiquitin ligase of the RING/U-box superfamily whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.	RING/U-box superfamily protein;(source:Araport11)
AT5G19430.5	protein_coding		Encodes a C3HC4-type RING finger E3 ubiquitin ligase of the RING/U-box superfamily whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.	RING/U-box superfamily protein;(source:Araport11)
AT5G19430.4	protein_coding		Encodes a C3HC4-type RING finger E3 ubiquitin ligase of the RING/U-box superfamily whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.	RING/U-box superfamily protein;(source:Araport11)
AT5G19430.3	protein_coding		Encodes a C3HC4-type RING finger E3 ubiquitin ligase of the RING/U-box superfamily whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.	RING/U-box superfamily protein;(source:Araport11)
AT5G66070.4	protein_coding		E3 ubiquitin ligase that functions in negative regulation of ABA signaling.	RING/U-box superfamily protein;(source:Araport11)
AT5G04215.1	long_noncoding_rna			None;(source:Araport11)
AT3G13420.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G04255.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G22210;(source:Araport11)
AT3G15520.3	protein_coding			Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G15520.2	protein_coding			Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT2G16940.4	protein_coding			Splicing factor, CC1-like protein;(source:Araport11)
AT4G08410.2	protein_coding			Proline-rich extensin-like family protein;(source:Araport11)
AT2G08650.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G34080;(source:Araport11)
AT1G44120.3	protein_coding			CELLULOSE SYNTHASE INTERACTIVE 2;(source:Araport11)
AT1G44120.2	protein_coding			CELLULOSE SYNTHASE INTERACTIVE 2;(source:Araport11)
AT5G07970.2	protein_coding			dentin sialophosphoprotein-like protein;(source:Araport11)
AT4G07130.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G23530;(source:Araport11)
AT3G31908.2	pseudogene			pseudogene of Reticulon family protein;(source:Araport11)
AT5G04725.1	long_noncoding_rna			None;(source:Araport11)
AT1G11960.3	protein_coding			ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT1G11960.2	protein_coding			ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT4G06160.1	long_noncoding_rna			None;(source:Araport11)
AT5G07715.1	long_noncoding_rna			None;(source:Araport11)
AT1G23915.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G06675.1	long_noncoding_rna			None;(source:Araport11)
AT2G08670.1	long_noncoding_rna			None;(source:Araport11)
AT2G34070.2	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 37;(source:Araport11)
AT3G02420.2	protein_coding			dihydroflavonol 4-reductase/flavanone protein;(source:Araport11)
AT4G38330.2	protein_coding			hemolysin-III integral membrane-like protein;(source:Araport11)
AT4G38330.3	protein_coding			hemolysin-III integral membrane-like protein;(source:Araport11)
AT4G38330.4	protein_coding			hemolysin-III integral membrane-like protein;(source:Araport11)
AT4G38330.5	protein_coding			hemolysin-III integral membrane-like protein;(source:Araport11)
AT2G08805.1	long_noncoding_rna			None;(source:Araport11)
AT1G09723.1	long_noncoding_rna			None;(source:Araport11)
AT1G80960.5	protein_coding			F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT2G36740.2	protein_coding			DNA binding protein SWC2;(source:Araport11)
AT3G00890.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G11940.2	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G09787.1	small_nucleolar_rna			None;(source:Araport11)
AT1G68340.3	protein_coding			hypothetical protein (DUF1639);(source:Araport11)
AT1G68340.2	protein_coding			hypothetical protein (DUF1639);(source:Araport11)
AT3G24460.2	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT5G63790.2	protein_coding		Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings.  Its expression can be induced by beta-cyclocitral, an oxidized   by-product of beta-carotene generated in the chloroplasts, mediates a protective retrograde response that lowers the levels of toxic peroxides and carbonyls, limiting damage to intracellular components.	NAC domain containing protein 102;(source:Araport11)
AT5G06065.1	long_noncoding_rna			None;(source:Araport11)
AT5G00440.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G61880.3	protein_coding		Encodes PAM16L, a paralog of PAM16 (AT3G59280).	Protein Transporter, Pam16;(source:Araport11)
AT1G05187.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G15720;(source:Araport11)
AT3G48980.2	protein_coding			O-glucosyltransferase rumi-like protein (DUF821);(source:Araport11)
AT4G27290.2	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT3G57830.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G57830.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G15025.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G05430.3	protein_coding			RNA-binding protein;(source:Araport11)
AT3G49600.3	protein_coding		Encodes a ubiquitin-specific protease which catalyzes deubiquitination of   histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1.	ubiquitin-specific protease 26;(source:Araport11)
AT3G11040.2	protein_coding		Encodes a cytosolic beta-endo-N-acetyglucosaminidase (ENGase). ENGases N-glycans cleave the O-glycosidic linkage between the two GlcNAc residues of the N-glycan core structure and thus generate a protein with a single GlcNAc attached to asparagine.	Glycosyl hydrolase family 85;(source:Araport11)
AT3G11040.3	protein_coding		Encodes a cytosolic beta-endo-N-acetyglucosaminidase (ENGase). ENGases N-glycans cleave the O-glycosidic linkage between the two GlcNAc residues of the N-glycan core structure and thus generate a protein with a single GlcNAc attached to asparagine.	Glycosyl hydrolase family 85;(source:Araport11)
AT3G09910.5	protein_coding			RAB GTPase homolog C2B;(source:Araport11)
AT3G09910.4	protein_coding			RAB GTPase homolog C2B;(source:Araport11)
AT5G07400.5	protein_coding			forkhead-associated domain-containing protein / FHA domain-containing protein;(source:Araport11)
AT1G06543.1	long_noncoding_rna			None;(source:Araport11)
AT1G61565.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G07400.6	protein_coding			forkhead-associated domain-containing protein / FHA domain-containing protein;(source:Araport11)
AT2G00500.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G06635.1	long_noncoding_rna			None;(source:Araport11)
AT3G06330.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G07400.2	protein_coding			forkhead-associated domain-containing protein / FHA domain-containing protein;(source:Araport11)
AT4G27270.3	protein_coding			Quinone reductase family protein;(source:Araport11)
AT4G27270.2	protein_coding			Quinone reductase family protein;(source:Araport11)
AT3G57410.4	protein_coding		Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.	villin 3;(source:Araport11)
AT5G07400.8	protein_coding			forkhead-associated domain-containing protein / FHA domain-containing protein;(source:Araport11)
AT4G19030.2	protein_coding		an aquaporin whose expression level is reduced by ABA, NaCl, dark, and desiccation. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.	NOD26-like major intrinsic protein 1;(source:Araport11)
AT3G06205.1	long_noncoding_rna			None;(source:Araport11)
AT2G35650.2	protein_coding		a member of Glycosyltransferase- Family 2 and encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein. Mutants exhibit defects in pollen tube growth and embryo development. The defective embryonic development was associated with reduced proliferation and failed cellularization of the endosperm.	cellulose synthase like;(source:Araport11)
AT2G35650.3	protein_coding		a member of Glycosyltransferase- Family 2 and encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein. Mutants exhibit defects in pollen tube growth and embryo development. The defective embryonic development was associated with reduced proliferation and failed cellularization of the endosperm.	cellulose synthase like;(source:Araport11)
AT5G18500.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G05337.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17840;(source:Araport11)
AT2G35650.4	protein_coding		a member of Glycosyltransferase- Family 2 and encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein. Mutants exhibit defects in pollen tube growth and embryo development. The defective embryonic development was associated with reduced proliferation and failed cellularization of the endosperm.	cellulose synthase like;(source:Araport11)
AT5G18500.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G05430.3	protein_coding			Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G08230.6	protein_coding		Codes for a H+-driven, high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta, AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G08230.5	protein_coding		Codes for a H+-driven, high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta, AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G08230.4	protein_coding		Codes for a H+-driven, high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta, AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT2G09815.1	small_nucleolar_rna			None;(source:Araport11)
AT5G06305.1	small_nucleolar_rna			None;(source:Araport11)
AT5G24120.3	protein_coding		Encodes a specialized sigma factor that functions in regulation of plastid genes  and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.	sigma factor E;(source:Araport11)
AT5G24120.2	protein_coding		Encodes a specialized sigma factor that functions in regulation of plastid genes  and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.	sigma factor E;(source:Araport11)
AT3G15590.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G27240.3	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT2G09510.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44100;(source:Araport11)
AT5G02915.1	small_nucleolar_rna			None;(source:Araport11)
AT5G05310.9	protein_coding			TLC ATP/ADP transporter;(source:Araport11)
AT1G27630.5	protein_coding			cyclin T 1;(source:Araport11)
AT4G19030.3	protein_coding		an aquaporin whose expression level is reduced by ABA, NaCl, dark, and desiccation. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.	NOD26-like major intrinsic protein 1;(source:Araport11)
AT4G24270.3	protein_coding		A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	EMBRYO DEFECTIVE 140;(source:Araport11)
AT4G24270.4	protein_coding		A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	EMBRYO DEFECTIVE 140;(source:Araport11)
AT4G05565.1	long_noncoding_rna			None;(source:Araport11)
AT4G08975.1	long_noncoding_rna			None;(source:Araport11)
AT1G53450.3	protein_coding			epstein-barr nuclear antigen;(source:Araport11)
AT1G56130.2	protein_coding			Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT3G54230.3	protein_coding		Encodes a splicing factor SUA (suppressor of abi3-5), homologous to the human protein RBM5.  Controls alternative splicing of the developmental regulator ABI3.	suppressor of abi3-5;(source:Araport11)
AT3G54230.4	protein_coding		Encodes a splicing factor SUA (suppressor of abi3-5), homologous to the human protein RBM5.  Controls alternative splicing of the developmental regulator ABI3.	suppressor of abi3-5;(source:Araport11)
AT3G03773.3	protein_coding		Encodes one of two isoforms of a co-chaperone of HSP90 that is required for root growth, in particular in the maintenance of the root meristem.  It can be phosphorylated in vitro by human and maize CK2.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT4G29540.3	protein_coding		Encodes a UDP-N-acetylglucosamine acyltransferase.	bacterial transferase hexapeptide repeat-containing protein;(source:Araport11)
AT2G09530.1	long_noncoding_rna			None;(source:Araport11)
AT4G13830.3	protein_coding		DnaJ-like protein (J20); nuclear gene	DNAJ-like 20;(source:Araport11)
AT4G10430.5	protein_coding			TMPIT-like protein;(source:Araport11)
AT4G10430.4	protein_coding			TMPIT-like protein;(source:Araport11)
AT4G10430.7	protein_coding			TMPIT-like protein;(source:Araport11)
AT4G16710.3	protein_coding			glycosyltransferase family protein 28;(source:Araport11)
AT5G60570.2	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G60570.3	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G09170.1	long_noncoding_rna			None;(source:Araport11)
AT1G09885.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G50240.3	protein_coding		Encodes a kinesin-related protein.	ATP binding microtubule motor family protein;(source:Araport11)
AT2G08425.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G30960;(source:Araport11)
AT1G80960.6	protein_coding			F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT2G25170.4	protein_coding		Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1.  Is an extragenic suppressor of slr2 (SSL2).  Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1.  It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.The mRNA is cell-to-cell mobile. Regulates plant responses to cold and salt stress.	chromatin remodeling factor CHD3 (PICKLE);(source:Araport11)
AT2G25170.2	protein_coding		Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1.  Is an extragenic suppressor of slr2 (SSL2).  Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1.  It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.The mRNA is cell-to-cell mobile. Regulates plant responses to cold and salt stress.	chromatin remodeling factor CHD3 (PICKLE);(source:Araport11)
AT2G25170.3	protein_coding		Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1.  Is an extragenic suppressor of slr2 (SSL2).  Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1.  It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.The mRNA is cell-to-cell mobile. Regulates plant responses to cold and salt stress.	chromatin remodeling factor CHD3 (PICKLE);(source:Araport11)
AT4G32760.3	protein_coding			ENTH/VHS/GAT family protein;(source:Araport11)
AT3G04905.1	small_nuclear_rna			U5;(source:Araport11)
AT2G09730.1	long_noncoding_rna			None;(source:Araport11)
AT2G04645.1	long_noncoding_rna			None;(source:Araport11)
AT3G51270.4	protein_coding			protein serine/threonine kinase;(source:Araport11)
AT2G17975.2	protein_coding		SRP1 is a C2C2 type zinc finger protein that binds RNA. It has a role in response to ABA.. It can bind the 3 PrimeUTR of ABI2 and appears to be involved in RNA turnover.	zinc finger (Ran-binding) family protein;(source:Araport11)
AT5G06925.1	long_noncoding_rna			None;(source:Araport11)
AT3G20475.2	protein_coding		Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination.  Required for the formation of Class I interference-sensitive crossovers.  Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination.  Required for the formation of Class I interference-sensitive crossovers.	MUTS-homologue 5;(source:Araport11)
AT3G20475.3	protein_coding		Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination.  Required for the formation of Class I interference-sensitive crossovers.  Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination.  Required for the formation of Class I interference-sensitive crossovers.	MUTS-homologue 5;(source:Araport11)
AT4G32200.2	protein_coding		meiotic asynaptic mutant 2, homologue of ASY1	DNA-binding HORMA family protein;(source:Araport11)
AT2G23760.4	protein_coding		Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw2 and saw1 may act redundantly to repress BP in leaves.	BEL1-like homeodomain 4;(source:Araport11)
AT1G05343.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17850;(source:Araport11)
AT1G75290.2	protein_coding		encodes a protein whose sequence is similar to an isoflavone reductase	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G09657.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G76750;(source:Araport11)
AT4G33640.2	protein_coding			costars family protein;(source:Araport11)
AT4G24050.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G01818.2	protein_coding			PLATZ transcription factor family protein;(source:Araport11)
AT5G24575.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G43120.2	protein_coding			ARM-repeat/Tetratricopeptide repeat (TPR)-like protein;(source:Araport11)
AT1G07507.1	other_rna			None;(source:Araport11)
AT3G22120.2	protein_coding		Cell wall-plasma membrane linker protein homolog (CWLP)	cell wall-plasma membrane linker protein;(source:Araport11)
AT2G30120.5	protein_coding			protein FLC EXPRESSOR;(source:Araport11)
AT1G74300.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G01175.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G01180;(source:Araport11)
AT3G20930.2	protein_coding		Encodes a unique protein that is both a member of the RIP (RNA-editing interacting protein) family and the RNA recognition motif (RRM)-containing family. It controls the editing extent of 62% of the plastid Cs targeted for editing in Arabidopsis.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G00860.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G62090.4	protein_coding		encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.	phytochrome interacting factor 3-like 2;(source:Araport11)
AT1G04200.2	protein_coding			dyggve-melchior-clausen syndrome protein;(source:Araport11)
AT1G04200.3	protein_coding			dyggve-melchior-clausen syndrome protein;(source:Araport11)
AT5G63710.4	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G63710.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G34807.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G28100.3	protein_coding		nodulin MtN21-like transporter family proteinThe mRNA is cell-to-cell mobile.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G07955.1	long_noncoding_rna			None;(source:Araport11)
AT2G34510.2	protein_coding			choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT2G39830.3	protein_coding		Essential for early phloem development and function, and for root system development.DAR2 is a member of a small (7 member) ubiquitin binding protein family. It appears to play a role in regulation of endoreduplication in leaf epidermal tissue.	DA1-related protein 2;(source:Araport11)
AT1G55673.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G06515.1	long_noncoding_rna			None;(source:Araport11)
AT1G09797.1	long_noncoding_rna			None;(source:Araport11)
AT5G04285.1	novel_transcribed_region			novel transcribed region; detected in dark-grown seedling, flower, pollen;(source:Araport11)
AT2G20362.3	protein_coding			transmembrane protein;(source:Araport11)
AT3G57410.7	protein_coding		Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.	villin 3;(source:Araport11)
AT5G39340.4	protein_coding		Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	histidine-containing phosphotransmitter 3;(source:Araport11)
AT5G39340.3	protein_coding		Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	histidine-containing phosphotransmitter 3;(source:Araport11)
AT1G67170.2	protein_coding			sarcolemmal membrane-associated protein;(source:Araport11)
AT4G06880.1	long_noncoding_rna			None;(source:Araport11)
AT3G48030.2	protein_coding		Mitochondria localized, hypoxia induced gene similar to rice HIGD.	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT5G57920.3	protein_coding			early nodulin-like protein 10;(source:Araport11)
AT5G57920.2	protein_coding			early nodulin-like protein 10;(source:Araport11)
AT1G04227.1	small_nucleolar_rna			None;(source:Araport11)
AT4G11050.2	protein_coding			glycosyl hydrolase 9C3;(source:Araport11)
AT4G11050.3	protein_coding			glycosyl hydrolase 9C3;(source:Araport11)
AT3G01205.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G02910;(source:Araport11)
AT5G16420.2	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT3G04775.1	long_noncoding_rna			None;(source:Araport11)
AT4G14790.2	protein_coding		encodes a nuclear-encoded DExH box RNA helicase, which is localized to mitochondria and whose in vitro ATPase activity is stimulated with mitochondrial RNA.	ATP-dependent RNA helicase;(source:Araport11)
AT3G07340.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G67110.2	protein_coding			cytochrome P450, family 735, subfamily A, polypeptide 2;(source:Araport11)
AT2G08320.1	long_noncoding_rna			None;(source:Araport11)
AT3G03235.1	miRNA_primary_transcript			microRNA ath-MIR5023 precursor;(source:Araport11)
AT3G21220.2	protein_coding		Encodes a mitogen-activated kinase kinase, dual specific protein kinase that is expressed in vegetative tissues and floral buds. Involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK4. In plants with both MKK5 and MKK4 levels reduced by RNAi plants, floral organs do not abscise suggesting a role for both proteins in mediating floral organ abscission.MKK5 is part of a positive feedback loop that regulates HAE expression in floral receptacles.	MAP kinase kinase 5;(source:Araport11)
AT5G28080.7	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.	Protein kinase superfamily protein;(source:Araport11)
AT2G18470.3	protein_coding		Proline-rich extensin-like receptor kinase 4. Functions at an early stage of ABA signalling inhibiting primary root cell elongation by perturbing Ca2+ homeostasis.	roline-rich extensin-like receptor kinase 4;(source:Araport11)
AT5G49740.2	protein_coding		Encodes a ferric chelate reductase.  Shows differential splicing and has three different mRNA products.  Expressed in the shoot, flower and cotyledon.	ferric reduction oxidase 7;(source:Araport11)
AT5G49740.3	protein_coding		Encodes a ferric chelate reductase.  Shows differential splicing and has three different mRNA products.  Expressed in the shoot, flower and cotyledon.	ferric reduction oxidase 7;(source:Araport11)
AT1G12750.7	protein_coding			RHOMBOID-like protein 6;(source:Araport11)
AT5G28080.4	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.	Protein kinase superfamily protein;(source:Araport11)
AT1G12750.5	protein_coding			RHOMBOID-like protein 6;(source:Araport11)
AT2G18470.2	protein_coding		Proline-rich extensin-like receptor kinase 4. Functions at an early stage of ABA signalling inhibiting primary root cell elongation by perturbing Ca2+ homeostasis.	roline-rich extensin-like receptor kinase 4;(source:Araport11)
AT3G13560.5	protein_coding			O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT3G13560.4	protein_coding			O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT1G05827.1	long_noncoding_rna			None;(source:Araport11)
AT5G58660.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G06255.1	long_noncoding_rna			None;(source:Araport11)
AT4G38100.2	protein_coding			CURVATURE THYLAKOID 1D-like protein;(source:Araport11)
AT4G16265.2	protein_coding		One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9.  Appears to be redundant with At3g16980	RNA polymerases M/15 Kd subunit;(source:Araport11)
AT1G07693.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G50900;(source:Araport11)
AT1G04747.1	long_noncoding_rna			None;(source:Araport11)
AT1G08517.1	long_noncoding_rna			None;(source:Araport11)
AT3G05885.1	long_noncoding_rna			None;(source:Araport11)
AT3G07655.1	long_noncoding_rna			None;(source:Araport11)
AT2G07405.1	other_rna			None;(source:Araport11)
AT2G21610.2	protein_coding			pectinesterase 11;(source:Araport11)
AT3G49870.2	protein_coding		A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	ADP-ribosylation factor-like A1C;(source:Araport11)
AT4G38380.2	protein_coding			MATE efflux family protein;(source:Araport11)
AT3G47630.3	protein_coding			translocator assembly/maintenance protein;(source:Araport11)
AT5G00420.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G47630.5	protein_coding			translocator assembly/maintenance protein;(source:Araport11)
AT3G47630.6	protein_coding			translocator assembly/maintenance protein;(source:Araport11)
AT5G00420.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G08155.1	long_noncoding_rna			None;(source:Araport11)
AT2G27020.2	protein_coding		Encodes 20S proteasome alpha 7 subunit PAG1.	20S proteasome alpha subunit G1;(source:Araport11)
AT1G13650.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G04945.4	protein_coding			HIT-type Zinc finger family protein;(source:Araport11)
AT1G13650.4	protein_coding			hypothetical protein;(source:Araport11)
AT4G02120.4	protein_coding		Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT3G04985.1	small_nucleolar_rna			None;(source:Araport11)
AT4G23860.4	protein_coding			PHD finger protein-like protein;(source:Araport11)
AT5G47800.4	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G03275.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G16250;(source:Araport11)
AT5G40780.3	protein_coding		Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll.	lysine histidine transporter 1;(source:Araport11)
AT3G06225.1	long_noncoding_rna			None;(source:Araport11)
AT5G06670.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G23540.2	protein_coding		Encodes a member of the PERK family of putative receptor kinases. Overexpression leads to morphological defects and reduced fertility and increased expression of MAX genes.	Protein kinase superfamily protein;(source:Araport11)
AT2G04690.3	protein_coding			Pyridoxamine 5-phosphate oxidase family protein;(source:Araport11)
AT5G09305.1	long_noncoding_rna			None;(source:Araport11)
AT5G06670.7	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G25380.4	protein_coding		core cell cycle genes	cyclin a2;(source:Araport11)
AT1G08157.1	miRNA_primary_transcript			microRNA ath-MIR5649a precursor;(source:Araport11)
AT3G02275.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G10140;(source:Araport11)
AT5G40270.2	protein_coding		Protein of unknown function involved in chloroplast development.	HD domain-containing metal-dependent phosphohydrolase family protein;(source:Araport11)
AT5G21950.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G10050.2	protein_coding		Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein;(source:Araport11)
AT1G10050.3	protein_coding		Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein;(source:Araport11)
AT5G47800.3	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G06670.8	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G17040.2	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G02120.3	protein_coding		Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT5G49470.6	protein_coding		Encodes a protein with similarity to RAF MAP Kinase that is expressed in most plant tissues. Based on loss of function and gain of function phenotypes, RAF10 appears to be involved in ABA response.	PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT5G00735.1	long_noncoding_rna			None;(source:Araport11)
AT3G09525.1	long_noncoding_rna			None;(source:Araport11)
AT2G08735.1	long_noncoding_rna			None;(source:Araport11)
AT5G27220.3	protein_coding			Frigida-like protein;(source:Araport11)
AT5G27220.2	protein_coding			Frigida-like protein;(source:Araport11)
AT4G09035.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G36670.4	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G11210.11	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.5;(source:Araport11)
AT5G11210.10	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.5;(source:Araport11)
AT4G17310.16	protein_coding			hypothetical protein;(source:Araport11)
AT4G04945.1	long_noncoding_rna			None;(source:Araport11)
AT3G57160.2	protein_coding			cysteine-rich TM module stress tolerance protein;(source:Araport11)
AT1G07667.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G50700;(source:Araport11)
AT5G50300.2	protein_coding		Encodes a homolog of the adenine-guanine-hypoxanthine transporter AzgA of Aspergillus nidulans. Function as a plant adenine-guanine transporter.  Two closely related genes exist in Arabidopsis: AT3G10960 (Azg1) and AT5G50300 (Azg2).	Xanthine/uracil permease family protein;(source:Araport11)
AT3G60570.2	protein_coding		member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin B5;(source:Araport11)
AT5G04205.1	long_noncoding_rna			None;(source:Araport11)
AT2G25160.2	protein_coding			cytochrome P450, family 82, subfamily F, polypeptide 1;(source:Araport11)
AT5G36670.2	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT4G22390.2	protein_coding			F-box associated ubiquitination effector family protein;(source:Araport11)
AT3G03055.1	long_noncoding_rna			None;(source:Araport11)
AT5G51620.4	protein_coding			Uncharacterized protein family (UPF0172);(source:Araport11)
AT5G65890.5	protein_coding		Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques.	ACT domain repeat 1;(source:Araport11)
AT1G61380.2	protein_coding		Encodes a membrane localized S-domain receptor kinase that is involved in lipopolysaccharide (LPS) sensing. SD1-29 detected LPS of Pseudomonas and Xanthomonas species for which it serves as a microbe associated molecular pattern triggering innate immunity. Loses of function mutants are hyper susceptible to P.syringae.	S-domain-1 29;(source:Araport11)
AT5G08935.1	long_noncoding_rna			None;(source:Araport11)
AT2G20950.6	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT1G02340.2	protein_coding		Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G25210.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G13170.3	protein_coding		Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA).  Required for meiotic recombination.  AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by  3 h a majority (80%) of meiocytes at this time point  contain >50 foci. However, by 5 h, AtSPO11-1 foci are  no longer detectable. This suggests that the protein undergoes  a rapid cycle of accumulation and disappearance  in meiocytes over a period of between 1 and 5 h post-S  phase.	Spo11/DNA topoisomerase VI, subunit A protein;(source:Araport11)
AT3G05175.1	long_noncoding_rna			None;(source:Araport11)
AT1G63480.7	protein_coding			AT hook motif DNA-binding family protein;(source:Araport11)
AT1G63480.6	protein_coding			AT hook motif DNA-binding family protein;(source:Araport11)
AT1G63480.5	protein_coding			AT hook motif DNA-binding family protein;(source:Araport11)
AT1G63480.4	protein_coding			AT hook motif DNA-binding family protein;(source:Araport11)
AT2G30680.2	protein_coding			callose synthase-like protein;(source:Araport11)
AT1G63480.2	protein_coding			AT hook motif DNA-binding family protein;(source:Araport11)
AT1G63570.3	protein_coding			Receptor-like protein kinase-related family protein;(source:Araport11)
AT1G09485.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G00830.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09485.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G29950.uORF1	uORF			Derives_from AT1G29950;(source:Araport11)
AT1G58370.2	protein_coding		Encodes a protein with xylanase activity.	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein;(source:Araport11)
AT5G25380.3	protein_coding		core cell cycle genes	cyclin a2;(source:Araport11)
AT1G09377.1	long_noncoding_rna			None;(source:Araport11)
AT1G48355.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G32487.4	protein_coding			hypothetical protein;(source:Araport11)
AT2G43560.2	protein_coding			FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT2G32487.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G32487.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G06980.5	protein_coding			hypothetical protein;(source:Araport11)
AT3G11230.4	protein_coding			Yippee family putative zinc-binding protein;(source:Araport11)
AT2G07865.1	long_noncoding_rna			None;(source:Araport11)
AT1G55150.2	protein_coding			DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT4G14520.11	protein_coding			DNA-directed RNA polymerase II-like protein;(source:Araport11)
AT4G14520.10	protein_coding			DNA-directed RNA polymerase II-like protein;(source:Araport11)
AT5G52655.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G09405.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G65630;(source:Araport11)
AT5G10190.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G19270.2	protein_coding		Encodes a protein with ABA 8 Prime-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family.	cytochrome P450, family 707, subfamily A, polypeptide 4;(source:Araport11)
AT1G04577.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G07470;(source:Araport11)
AT2G20210.2	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT2G41830.2	protein_coding			Uncharacterized protein;(source:Araport11)
AT1G13630.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G01390.3	protein_coding		Subunit G of the vacuolar membrane ATPAse complex	vacuolar membrane ATPase 10;(source:Araport11)
AT1G34380.3	protein_coding			5-3 exonuclease family protein;(source:Araport11)
AT2G13360.3	protein_coding		Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration.	alanine:glyoxylate aminotransferase;(source:Araport11)
AT1G13630.6	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G13630.5	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G13630.4	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G16350.2	protein_coding		Calcium sensor protein. Binds CIPK14.	calcineurin B-like protein 6;(source:Araport11)
AT2G29910.7	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G79560.3	protein_coding		Encodes an FtsH protease that is localized to the chloroplast and is part of a membrane localized translocation motor complex .Strong interaction with TIC inner envelope protein translocon which consists of Tic20/Tic56/Tic100/Tic214(Ycf1)(DOI:10.1105/tpc.18.00357). Mutations in this locus result in embryo lethality.	FTSH protease 12;(source:Araport11)
AT1G79560.2	protein_coding		Encodes an FtsH protease that is localized to the chloroplast and is part of a membrane localized translocation motor complex .Strong interaction with TIC inner envelope protein translocon which consists of Tic20/Tic56/Tic100/Tic214(Ycf1)(DOI:10.1105/tpc.18.00357). Mutations in this locus result in embryo lethality.	FTSH protease 12;(source:Araport11)
AT5G44360.2	protein_coding			FAD-binding Berberine family protein;(source:Araport11)
AT4G06305.1	small_nucleolar_rna			None;(source:Araport11)
AT5G40720.3	protein_coding			C3H4 type zinc finger protein (DUF23);(source:Araport11)
AT3G09220.2	protein_coding		putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	laccase 7;(source:Araport11)
AT5G03925.1	long_noncoding_rna			None;(source:Araport11)
AT1G48315.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G48320;(source:Araport11)
AT1G48315.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G48320;(source:Araport11)
AT1G08835.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09593.1	long_noncoding_rna			None;(source:Araport11)
AT1G48315.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G48320;(source:Araport11)
AT5G02860.4	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G02860.5	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G29910.3	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT4G27980.3	protein_coding			trichohyalin-like protein (DUF3444);(source:Araport11)
AT4G27980.2	protein_coding			trichohyalin-like protein (DUF3444);(source:Araport11)
AT5G02860.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G02860.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G59570.2	protein_coding		Encodes BOA (BROTHER OF LUX ARRHYTHMO), a component of the circadian clock.The mRNA is cell-to-cell mobile.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G25175.2	other_rna			None;(source:Araport11)
AT1G25175.3	other_rna			None;(source:Araport11)
AT1G25175.4	other_rna			None;(source:Araport11)
AT3G04320.2	protein_coding			Kunitz family trypsin and protease inhibitor protein;(source:Araport11)
AT5G16770.4	protein_coding		Member of the R2R3 factor gene family.	myb domain protein 9;(source:Araport11)
AT2G07805.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G22610;(source:Araport11)
AT1G34260.4	protein_coding		Encodes a protein that is predicted to act as a phosphatidylinositol-3P 5-kinase, but, because it lacks a FYVE domain, it is unlikely to be efficiently targeted to membranes containing the porposed phosphatidylinositol-3P substrate. Therefore, its molecular function remains unknown.The mRNA is cell-to-cell mobile.	FORMS APLOID AND BINUCLEATE CELLS 1A;(source:Araport11)
AT3G08885.2	pseudogene			pseudogene of ferretin 1;(source:Araport11)
AT1G61040.3	protein_coding		Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family. Member of PAF-C complex.	plus-3 domain-containing protein;(source:Araport11)
AT1G61040.2	protein_coding		Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family. Member of PAF-C complex.	plus-3 domain-containing protein;(source:Araport11)
AT5G54670.2	protein_coding		Encodes a truncated KatC polypeptide (KatC(207-754)), which includes the carboxyl-terminal region of KatC. This was expressed in Escherichia coli and was shown to possess microtubule-stimulated ATPase activity.	kinesin 3;(source:Araport11)
AT5G54670.3	protein_coding		Encodes a truncated KatC polypeptide (KatC(207-754)), which includes the carboxyl-terminal region of KatC. This was expressed in Escherichia coli and was shown to possess microtubule-stimulated ATPase activity.	kinesin 3;(source:Araport11)
AT3G09055.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G10745.3	protein_coding			transmembrane protein;(source:Araport11)
AT4G05950.1	long_noncoding_rna			None;(source:Araport11)
AT5G59890.3	protein_coding		actin depolymerizing factor 4 (ADF4) mRNA, complete cds	actin depolymerizing factor 4;(source:Araport11)
AT4G05790.1	long_noncoding_rna			None;(source:Araport11)
AT2G08555.1	miRNA_primary_transcript			microRNA ath-MIR8170 precursor;(source:Araport11)
AT2G29485.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G00345.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G06725.1	long_noncoding_rna			None;(source:Araport11)
AT5G25370.4	protein_coding		member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.	phospholipase D alpha 3;(source:Araport11)
AT2G13820.3	protein_coding			Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G17380.2	protein_coding			jasmonate-zim-domain protein 5;(source:Araport11)
AT2G05225.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT4G05555.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G19003.4	protein_coding			E2F/DP family winged-helix DNA-binding domain-containing protein;(source:Araport11)
AT1G16460.6	protein_coding		encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast.  Can also act as a mercaptopyruvate sulfurtransferase.	rhodanese homologue 2;(source:Araport11)
AT5G06775.1	long_noncoding_rna			None;(source:Araport11)
AT4G39950.2	protein_coding		Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.The mRNA is cell-to-cell mobile.	cytochrome P450, family 79, subfamily B, polypeptide 2;(source:Araport11)
AT1G13220.3	protein_coding		Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. Member of a small gene family in Arabidopsis containing 4 proteins (LNC1-4 or CRWN 1-4) with redundant functions in protection from oxidative damage, control of nuclear morphology and degradation of ABI5.	nuclear matrix constituent protein-like protein;(source:Araport11)
AT1G09813.1	long_noncoding_rna			None;(source:Araport11)
AT2G06685.1	long_noncoding_rna			None;(source:Araport11)
AT1G03010.2	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G03010.3	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G39060.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G08865.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G08865.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G06410.2	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.	trehalose-phosphatase/synthase 7;(source:Araport11)
AT3G05085.1	long_noncoding_rna			None;(source:Araport11)
AT4G14965.2	protein_coding			membrane-associated progesterone binding protein 4;(source:Araport11)
AT3G03585.1	small_nucleolar_rna			None;(source:Araport11)
AT1G48740.4	protein_coding		Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G48740.3	protein_coding		Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G10430.8	protein_coding			TMPIT-like protein;(source:Araport11)
AT4G19003.5	protein_coding			E2F/DP family winged-helix DNA-binding domain-containing protein;(source:Araport11)
AT4G20410.2	protein_coding		Encodes a member of the gamma-soluble NSF attachment protein (gSNAP) gene family.	gamma-soluble NSF attachment protein;(source:Araport11)
AT2G43500.8	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT5G43810.3	protein_coding		Encodes Argonaute10, a member of the EIF2C (elongation initiation factor 2c)/  Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. AGO10 specifically sequesters miR166/165 to regulate shoot apical meristem development.	Stabilizer of iron transporter SufD / Polynucleotidyl transferase;(source:Araport11)
AT1G09840.10	protein_coding			shaggy-like protein kinase 41;(source:Araport11)
AT4G15280.2	protein_coding			UDP-glucosyl transferase 71B5;(source:Araport11)
AT4G13330.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G28470.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G43500.7	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT2G43500.6	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT3G49100.2	protein_coding			Signal recognition particle, SRP9/SRP14 subunit;(source:Araport11)
AT1G70335.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G07885.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G52100;(source:Araport11)
AT1G52603.1	protein_coding			GRF zinc finger protein;(source:Araport11)
AT3G00730.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09867.1	small_nucleolar_rna			None;(source:Araport11)
AT3G49160.2	protein_coding		Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.	pyruvate kinase family protein;(source:Araport11)
AT3G49160.3	protein_coding		Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.	pyruvate kinase family protein;(source:Araport11)
AT1G66840.2	protein_coding		Encodes a coiled-coil protein WEB2 (weak chloroplast movement under blue light 2, also named PMI2/plastid movement impaired 2). Involved in chloroplast avoidance movement under intermediate and high light intensities. WEB2, together with another coiled-coil protein WEB1 (AT2G26570), maintains the chloroplast photorelocation movement velocity.	PLASTID MOVEMENT IMPAIRED protein (DUF827);(source:Araport11)
AT2G40400.3	protein_coding		Encodes a chloroplast localized protein of unknown function that is involved in regulation of chloroplast development.	DUF399 family protein, putative (DUF399 and DUF3411);(source:Araport11)
AT2G05410.2	protein_coding			MATH domain/coiled-coil protein;(source:Araport11)
AT1G25240.2	protein_coding			ENTH/VHS/GAT family protein;(source:Araport11)
AT4G29730.2	protein_coding		cell cycle-related repressor genes encoding WD-repeat proteins.	nucleosome/chromatin assembly factor group C5;(source:Araport11)
AT4G29730.3	protein_coding		cell cycle-related repressor genes encoding WD-repeat proteins.	nucleosome/chromatin assembly factor group C5;(source:Araport11)
AT5G05675.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G04335.1	long_noncoding_rna			None;(source:Araport11)
AT1G58350.4	protein_coding			Putative serine esterase family protein;(source:Araport11)
AT5G20360.5	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G00300.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G07295.1	long_noncoding_rna			None;(source:Araport11)
AT2G24800.2	protein_coding			Peroxidase superfamily protein;(source:Araport11)
AT5G03455.2	protein_coding		Encodes a homolog of yeast cell cycle regulator CDC25.  It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast.  Non-plant CDC25 proteins have been shown to do this.  However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance.	Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT1G50310.2	protein_coding		Sucrose transporter, expressed in pollen tubes.	sugar transporter 9;(source:Araport11)
AT5G01275.1	long_noncoding_rna			None;(source:Araport11)
AT1G67570.2	protein_coding			zinc finger CONSTANS-like protein (DUF3537);(source:Araport11)
AT3G00320.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G20270.4	protein_coding		Encodes one of the two LBP/BPI related proteins (AT1G04970/LBR-1, AT3G20270/LBR-2) that bind to LPS directly and regulate PR1 expression.	lipid-binding serum glycoprotein family protein;(source:Araport11)
AT1G73960.3	protein_coding			TBP-associated factor 2;(source:Araport11)
AT3G06345.1	miRNA_primary_transcript			microRNA ath-MIR5642a precursor;(source:Araport11)
AT2G42835.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42830;(source:Araport11)
AT3G63340.10	protein_coding			kinase superfamily protein;(source:Araport11)
AT3G63340.11	protein_coding			kinase superfamily protein;(source:Araport11)
AT3G63340.12	protein_coding			kinase superfamily protein;(source:Araport11)
AT5G05400.2	protein_coding			LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT2G05665.1	long_noncoding_rna			None;(source:Araport11)
AT5G03585.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G23230;(source:Araport11)
AT3G45660.3	protein_coding		Encodes a member of the NAXT NPF subfamily.	Major facilitator superfamily protein;(source:Araport11)
AT3G45660.2	protein_coding		Encodes a member of the NAXT NPF subfamily.	Major facilitator superfamily protein;(source:Araport11)
AT5G20360.4	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G05820.2	protein_coding		Encodes a putative plastid-targeted alkaline/neutral invertase.Expression is induced by salt, osmotic and ABA treatments. Loss of function affects mitochondrial functioning and ROS production.	invertase H;(source:Araport11)
AT2G01650.3	protein_coding		encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.	plant UBX domain-containing protein 2;(source:Araport11)
AT2G23985.15	protein_coding			hypothetical protein;(source:Araport11)
AT5G04550.2	protein_coding			type-1 restriction enzyme mjaxp r protein (DUF668);(source:Araport11)
AT2G09615.1	long_noncoding_rna			None;(source:Araport11)
AT3G62110.2	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT2G13800.4	protein_coding			somatic embryogenesis receptor-like kinase 5;(source:Araport11)
AT3G07175.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G45590;(source:Araport11)
AT3G06590.4	protein_coding		Encodes RITF1, a bHLH transcription factor that regulates the transcription of several genes involved in the detoxification of reactive oxygen species generated by salt stress.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G63880.2	protein_coding		Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.The mRNA is cell-to-cell mobile.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G24520.4	protein_coding		Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes. Auxin and ethylene responsiveness of TTG1 transcription is lost in myb12 mutants.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G13720.2	protein_coding			Inosine triphosphate pyrophosphatase family protein;(source:Araport11)
AT3G15720.3	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT1G08353.1	small_nucleolar_rna			None;(source:Araport11)
AT5G54940.3	protein_coding			Translation initiation factor SUI1 family protein;(source:Araport11)
AT1G19530.2	protein_coding			DNA polymerase epsilon catalytic subunit A;(source:Araport11)
AT5G66850.2	protein_coding		Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK3 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens.	mitogen-activated protein kinase kinase kinase 5;(source:Araport11)
AT5G21222.3	protein_coding			protein kinase family protein;(source:Araport11)
AT5G21222.2	protein_coding			protein kinase family protein;(source:Araport11)
AT3G56080.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G01055.1	long_noncoding_rna			None;(source:Araport11)
AT1G53000.2	protein_coding		Encodes a mitochondrial-localized CMP-KDO (3-deoxy-D-manno-octulosonate) synthetase. This is the enzyme activating KDO as a nucleotide sugar prior to its   incorporation into rhamnogalacturonan-II. Heterozygous mutants are defective in pollen development and in pollen tube elongation.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT5G21222.4	protein_coding			protein kinase family protein;(source:Araport11)
AT1G61990.2	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT5G16235.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G16230;(source:Araport11)
AT3G16840.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G12640.3	protein_coding		Encodes a member of the Split ends (Spen) protein family that is characterized by an N-terminal domain, with one or more RNA recognition motifs and a SPOC domain. Knockout and overexpression mutants show no apparent changes in growth, development and flowering time under standard growth conditions.	RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT3G60040.2	protein_coding			F-box family protein;(source:Araport11)
AT1G03070.3	protein_coding			Bax inhibitor-1 family protein;(source:Araport11)
AT3G60040.4	protein_coding			F-box family protein;(source:Araport11)
AT5G07175.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G03295.1	long_noncoding_rna			None;(source:Araport11)
AT5G08855.1	long_noncoding_rna			None;(source:Araport11)
AT5G09835.1	long_noncoding_rna			None;(source:Araport11)
AT2G37020.3	protein_coding			Translin family protein;(source:Araport11)
AT5G49780.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G08327.1	small_nucleolar_rna			None;(source:Araport11)
AT5G63905.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G72860.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G56275.2	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT4G25434.11	protein_coding			nudix hydrolase homolog 10;(source:Araport11)
AT4G25434.10	protein_coding			nudix hydrolase homolog 10;(source:Araport11)
AT5G09815.1	long_noncoding_rna			None;(source:Araport11)
AT5G08170.3	protein_coding			porphyromonas-type peptidyl-arginine deiminase family protein;(source:Araport11)
AT1G09225.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G05227.1	long_noncoding_rna			None;(source:Araport11)
AT3G10300.6	protein_coding			Calcium-binding EF-hand family protein;(source:Araport11)
AT5G43320.3	protein_coding		Member of CKL gene family (CKL-C group)	casein kinase I-like 8;(source:Araport11)
AT4G00380.2	protein_coding		Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).	XH/XS domain-containing protein;(source:Araport11)
AT4G00380.3	protein_coding		Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).	XH/XS domain-containing protein;(source:Araport11)
AT4G25434.12	protein_coding			nudix hydrolase homolog 10;(source:Araport11)
AT4G19003.3	protein_coding			E2F/DP family winged-helix DNA-binding domain-containing protein;(source:Araport11)
AT3G08360.1	long_noncoding_rna			None;(source:Araport11)
AT3G16785.6	protein_coding		Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins.  This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains.  Involved regulating root development in response to nutrient limitation. Does not appear to be involved in root hair patterning. Not induced upon Pi starvation.	phospholipase D P1;(source:Araport11)
AT3G16785.5	protein_coding		Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins.  This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains.  Involved regulating root development in response to nutrient limitation. Does not appear to be involved in root hair patterning. Not induced upon Pi starvation.	phospholipase D P1;(source:Araport11)
AT3G16785.4	protein_coding		Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins.  This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains.  Involved regulating root development in response to nutrient limitation. Does not appear to be involved in root hair patterning. Not induced upon Pi starvation.	phospholipase D P1;(source:Araport11)
AT3G16785.3	protein_coding		Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins.  This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains.  Involved regulating root development in response to nutrient limitation. Does not appear to be involved in root hair patterning. Not induced upon Pi starvation.	phospholipase D P1;(source:Araport11)
AT3G16785.2	protein_coding		Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins.  This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains.  Involved regulating root development in response to nutrient limitation. Does not appear to be involved in root hair patterning. Not induced upon Pi starvation.	phospholipase D P1;(source:Araport11)
AT2G01710.2	protein_coding		SDJ2 functions partially redundantly with SDJ1 and SDJ3 and interacts with SUVH1 and SUVH3 to form a SUVH-SDJ complex. The complex binds promoters with DNA methylation and mediates transcriptional activation of promoter methylated genes.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G14020.2	protein_coding			nuclear factor Y, subunit A6;(source:Araport11)
AT2G47690.3	protein_coding			NADH-ubiquinone oxidoreductase-like protein;(source:Araport11)
AT5G04005.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G25500;(source:Araport11)
AT4G37440.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G09130.1	long_noncoding_rna			None;(source:Araport11)
AT5G37400.2	protein_coding			hypothetical protein (DUF577);(source:Araport11)
AT5G36110.2	protein_coding		Encodes a member of the CYP716A subfamily of cytochrome P450 monooxygenases with triterpene oxidizing activity catalyzing C-28 hydroxylation of alpha-amyrin, beta-amyrin, and lupeol, producing uvaol, erythrodiol, and betulin, respectively. Additionally, it shows carboxylation activity for the C-28 position of alpha- and beta-amyrin.	cytochrome P450, family 716, subfamily A, polypeptide 1;(source:Araport11)
AT3G02915.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G14350;(source:Araport11)
AT3G09245.1	long_noncoding_rna			None;(source:Araport11)
AT2G27150.3	protein_coding		Encodes the aldehyde oxidase delta isoform  catalyzing the final step in abscisic acid  biosynthesis.	abscisic aldehyde oxidase 3;(source:Araport11)
AT1G09393.1	long_noncoding_rna			None;(source:Araport11)
AT1G66235.2	protein_coding			no-apical-meristem-associated carboxy-terminal domain protein;(source:Araport11)
AT3G04215.1	long_noncoding_rna			None;(source:Araport11)
AT2G36792.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G36790;(source:Araport11)
AT2G26690.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G26690.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT4G37450.2	protein_coding		AGP18 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP19, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers and is active in the regulation of the selection and survival of megaspores.	arabinogalactan protein 18;(source:Araport11)
AT1G09880.2	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT2G08185.1	novel_transcribed_region			novel transcribed region; detected in carpel;(source:Araport11)
AT5G09895.1	long_noncoding_rna			None;(source:Araport11)
AT5G08995.1	long_noncoding_rna			None;(source:Araport11)
AT1G77950.4	protein_coding			AGAMOUS-like 67;(source:Araport11)
AT2G46765.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G04305.1	long_noncoding_rna			None;(source:Araport11)
AT3G02935.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G14362;(source:Araport11)
AT5G58910.3	protein_coding		putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	laccase 16;(source:Araport11)
AT5G58910.2	protein_coding		putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	laccase 16;(source:Araport11)
AT1G79740.3	protein_coding			hAT transposon superfamily;(source:Araport11)
AT2G40030.2	protein_coding		Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit.  Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing. The nrpe1 mutant is more resistant to biotrophic pathogens and is primed to activate salicylic acid-dependent defence genes.	nuclear RNA polymerase D1B;(source:Araport11)
AT1G22150.3	protein_coding		sulfate transporter Sultr1;3	sulfate transporter 1;(source:Araport11)
AT3G02280.3	protein_coding			Flavodoxin family protein;(source:Araport11)
AT3G05210.2	protein_coding		encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5 Prime end of damaged DNA, similar to ERCC1/RAD10.	nucleotide repair protein;(source:Araport11)
AT1G22150.4	protein_coding		sulfate transporter Sultr1;3	sulfate transporter 1;(source:Araport11)
AT4G03823.2	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT4G09335.1	long_noncoding_rna			None;(source:Araport11)
AT3G08925.1	long_noncoding_rna			None;(source:Araport11)
AT1G50140.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G35637.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G35640;(source:Araport11)
AT2G35637.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G35640;(source:Araport11)
AT3G07695.1	miRNA_primary_transcript			microRNA ath-MIR5645a precursor;(source:Araport11)
AT4G03460.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT1G15150.2	protein_coding			MATE efflux family protein;(source:Araport11)
AT2G39630.3	protein_coding		Encodes a putative dolichyl-phosphate &beta;-glucosyltransferase.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT2G38025.2	protein_coding			Cysteine proteinases superfamily protein;(source:Araport11)
AT1G72320.4	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.	pumilio 23;(source:Araport11)
AT1G80200.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G05120.2	protein_coding			Helicase protein with RING/U-box domain-containing protein;(source:Araport11)
AT5G11210.3	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.5;(source:Araport11)
AT4G38905.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G05233.1	long_noncoding_rna			None;(source:Araport11)
AT1G72340.2	protein_coding			NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT1G72340.3	protein_coding			NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT1G50440.5	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G50440.4	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT4G01395.1	protein_coding			conserved oligomeric Golgi complex subunit 4;(source:Araport11)
AT5G62610.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G46572.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G46570;(source:Araport11)
AT1G05593.1	long_noncoding_rna			None;(source:Araport11)
AT1G07597.1	long_noncoding_rna			None;(source:Araport11)
AT2G27150.6	protein_coding		Encodes the aldehyde oxidase delta isoform  catalyzing the final step in abscisic acid  biosynthesis.	abscisic aldehyde oxidase 3;(source:Araport11)
AT5G11210.6	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.5;(source:Araport11)
AT5G43730.3	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G43730.2	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G60370.2	protein_coding			exonuclease V-like protein;(source:Araport11)
AT5G45200.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G11500.2	protein_coding		DUF1218 family member.	transmembrane protein, putative (DUF1218);(source:Araport11)
AT5G43730.5	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G43730.4	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G01585.1	long_noncoding_rna			None;(source:Araport11)
AT3G27440.2	protein_coding		One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 5;(source:Araport11)
AT5G65890.3	protein_coding		Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques.	ACT domain repeat 1;(source:Araport11)
AT4G15270.2	protein_coding			glucosyltransferase-like protein;(source:Araport11)
AT4G15270.3	protein_coding			glucosyltransferase-like protein;(source:Araport11)
AT1G09925.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G02715.2	protein_coding			flocculation FLO11-like protein;(source:Araport11)
AT5G43880.3	protein_coding			methyl-coenzyme M reductase II subunit gamma, putative (DUF3741);(source:Araport11)
AT1G09925.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G51465.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G16280.2	protein_coding		encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G17250.3	protein_coding			transmembrane protein;(source:Araport11)
AT5G08110.2	protein_coding		Plays a role in the maintenance of genome stability and the repair of aberrant replication intermediates in the root meristem. Is involved with RAD1, FAN1, and RECQ4A in the repair of DNA CLs.	UBQ, helicase-c and DEAD-like helicase domain-containing protein;(source:Araport11)
AT3G27960.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G26980.3	protein_coding		member of SYP4 Gene Family	syntaxin of plants 41;(source:Araport11)
AT5G44860.2	protein_coding			polyadenylate-binding protein 1-B-binding protein;(source:Araport11)
AT3G09360.2	protein_coding		Cyclin/Brf1-like TBP-binding protein. Double mutants with BRF1 show defects in pollen development.	Cyclin/Brf1-like TBP-binding protein;(source:Araport11)
AT3G09360.3	protein_coding		Cyclin/Brf1-like TBP-binding protein. Double mutants with BRF1 show defects in pollen development.	Cyclin/Brf1-like TBP-binding protein;(source:Araport11)
AT1G22275.2	protein_coding		One of two nearly identical proteins (ZYP1a) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.	Myosin heavy chain-related protein;(source:Araport11)
AT1G22275.3	protein_coding		One of two nearly identical proteins (ZYP1a) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.	Myosin heavy chain-related protein;(source:Araport11)
AT2G40715.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G09330.5	protein_coding			NAC domain containing protein 82;(source:Araport11)
AT1G08853.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G66870;(source:Araport11)
AT5G40600.2	protein_coding			bromodomain testis-specific protein;(source:Araport11)
AT5G40600.3	protein_coding			bromodomain testis-specific protein;(source:Araport11)
AT2G00980.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G40600.4	protein_coding			bromodomain testis-specific protein;(source:Araport11)
AT3G27940.2	protein_coding			LOB domain-containing protein 26;(source:Araport11)
AT3G27940.3	protein_coding			LOB domain-containing protein 26;(source:Araport11)
AT5G08130.7	protein_coding		Encodes a basic helix-loop-helix (bHLH) family protein BIM1 (BES1-INTERACTING MYC-LIKE 1), involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G08130.8	protein_coding		Encodes a basic helix-loop-helix (bHLH) family protein BIM1 (BES1-INTERACTING MYC-LIKE 1), involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G45600.2	protein_coding		Member of TETRASPANIN family	tetraspanin3;(source:Araport11)
AT3G53850.3	protein_coding			Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G06900.1	long_noncoding_rna			None;(source:Araport11)
AT5G06335.1	long_noncoding_rna			None;(source:Araport11)
AT5G08745.1	long_noncoding_rna			None;(source:Araport11)
AT2G00600.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G37072.4	pseudogene			pseudogene of Ribosomal protein S4 (RPS4A) family protein;(source:Araport11)
AT2G00600.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00600.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00600.5	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00600.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G37072.3	pseudogene			pseudogene of Ribosomal protein S4 (RPS4A) family protein;(source:Araport11)
AT2G00600.6	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G02320.3	protein_coding		Encodes a putative c-MYB-like transcription factor of the MYB3R factor gene family (MYB3R5).	myb domain protein 3r-5;(source:Araport11)
AT3G13770.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G55070.2	protein_coding			Dihydrolipoamide succinyltransferase;(source:Araport11)
AT3G06755.1	long_noncoding_rna			None;(source:Araport11)
AT2G05585.1	long_noncoding_rna			None;(source:Araport11)
AT5G09145.1	long_noncoding_rna			None;(source:Araport11)
AT2G44993.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G16660.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G05145.1	novel_transcribed_region			novel transcribed region; detected in receptacle, leaf, dark-grown seedling, flower, aerial;(source:Araport11)
AT3G04920.2	protein_coding			Ribosomal protein S24e family protein;(source:Araport11)
AT2G27150.5	protein_coding		Encodes the aldehyde oxidase delta isoform  catalyzing the final step in abscisic acid  biosynthesis.	abscisic aldehyde oxidase 3;(source:Araport11)
AT5G49390.2	protein_coding			serine/threonine-protein phosphatase 4 regulatory subunit-like protein;(source:Araport11)
AT2G10615.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06797.1	other_rna			None;(source:Araport11)
AT3G10840.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G08493.1	other_rna			None;(source:Araport11)
AT1G27610.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G27610.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G18570.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G43070.4	protein_coding			SIGNAL PEPTIDE PEPTIDASE-LIKE 3;(source:Araport11)
AT3G00520.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G43070.2	protein_coding			SIGNAL PEPTIDE PEPTIDASE-LIKE 3;(source:Araport11)
AT1G19850.uORF2	uORF			Derives_from AT1G19850;(source:Araport11)
AT3G18040.3	protein_coding		Encodes a protein with similarity to MAP kinases (MAPK9).Expressed preferentially in guard cells and appears to be involved in reactive oxygen species mediated ABA signaling.	MAP kinase 9;(source:Araport11)
AT5G59480.3	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G09243.1	long_noncoding_rna			None;(source:Araport11)
AT1G73970.4	protein_coding			obscurin-like protein;(source:Araport11)
AT3G08220.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52030;(source:Araport11)
AT1G74650.2	protein_coding		Member of the R2R3 factor gene family.	myb domain protein 31;(source:Araport11)
AT1G74650.3	protein_coding		Member of the R2R3 factor gene family.	myb domain protein 31;(source:Araport11)
AT2G01420.3	protein_coding		Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems.  It is involved in the maintenance of embryonic auxin gradients.  A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).	Auxin efflux carrier family protein;(source:Araport11)
AT4G09365.1	antisense_rna			Natural antisense transcript overlaps with AT4G36720;(source:Araport11)
AT4G19650.2	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT3G19510.2	protein_coding		Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1  homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains.	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein;(source:Araport11)
AT3G13340.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G58040.2	protein_coding		Encodes a subunit of the polyadenylation apparatus that interacts with and stimulates the activity of poly(A) polymerase.  Additionally , it interacts with several polyadenylation factor subunits and is an RNA-binding protein.  It is suggested that this protein coordinates a number of polyadenylation factor subunits with PAP and with RNA.The mRNA is cell-to-cell mobile.  Important for plant development and root responses to abiotic stresses.	FIP1[V]-like protein;(source:Araport11)
AT5G35160.4	protein_coding			Endomembrane protein 70 protein family;(source:Araport11)
AT5G35160.3	protein_coding			Endomembrane protein 70 protein family;(source:Araport11)
AT1G20270.3	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G08135.1	long_noncoding_rna			None;(source:Araport11)
AT3G13360.2	protein_coding		Encodes an outer nuclear membrane protein that anchors RanGAP1 to the nuclear envelope.  It interacts with SUN proteins and is required for maintaining the elongated nuclear shape of epidermal cells.	WPP domain interacting protein 3;(source:Araport11)
AT1G06927.1	long_noncoding_rna			None;(source:Araport11)
AT2G31750.2	protein_coding		Encodes an auxin glycosyltransferase that is likely to be involved in regulation of auxin by glycosylation.	UDP-glucosyl transferase 74D1;(source:Araport11)
AT1G05617.1	long_noncoding_rna			None;(source:Araport11)
AT5G49840.2	protein_coding			ATP-dependent Clp protease;(source:Araport11)
AT1G08915.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G35340.2	protein_coding			helicase domain-containing protein;(source:Araport11)
AT5G49840.4	protein_coding			ATP-dependent Clp protease;(source:Araport11)
AT5G45200.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G24880.2	protein_coding		Encodes a nuclear localized protein of unknown function that interacts with components of the NuA4 histone acetyltransferase complex. I	Helicase/SANT-associated, DNA binding protein;(source:Araport11)
AT3G51140.2	protein_coding			DnaJ (DUF3353);(source:Araport11)
AT5G01295.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G07110;(source:Araport11)
AT2G26280.5	protein_coding		smr (Small MutS Related) domain-containing protein	CTC-interacting domain 7;(source:Araport11)
AT3G01025.1	long_noncoding_rna			None;(source:Araport11)
AT2G24755.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G24750 and AT2G24760;(source:Araport11)
AT2G09025.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G39270;(source:Araport11)
AT3G09015.1	long_noncoding_rna			None;(source:Araport11)
AT2G07435.1	long_noncoding_rna			None;(source:Araport11)
AT5G51220.2	protein_coding			ubiquinol-cytochrome C chaperone family protein;(source:Araport11)
AT5G51220.3	protein_coding			ubiquinol-cytochrome C chaperone family protein;(source:Araport11)
AT1G06110.2	protein_coding			SKP1/ASK-interacting protein 16;(source:Araport11)
AT1G06110.3	protein_coding			SKP1/ASK-interacting protein 16;(source:Araport11)
AT3G05945.1	long_noncoding_rna			None;(source:Araport11)
AT1G65130.2	protein_coding			Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT5G00480.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G53120.2	protein_coding			RNA-binding S4 domain-containing protein;(source:Araport11)
AT1G03325.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G57680.3	protein_coding			Peptidase S41 family protein;(source:Araport11)
AT5G03175.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G20510;(source:Araport11)
AT2G00950.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G07665.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G36760.3	protein_coding		Arabidopsis aminopeptidase P1The mRNA is cell-to-cell mobile.	aminopeptidase P1;(source:Araport11)
AT4G36760.2	protein_coding		Arabidopsis aminopeptidase P1The mRNA is cell-to-cell mobile.	aminopeptidase P1;(source:Araport11)
AT4G10780.2	protein_coding			LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT2G10950.2	protein_coding			BSD domain-containing protein;(source:Araport11)
AT2G10950.3	protein_coding			BSD domain-containing protein;(source:Araport11)
AT5G23810.3	protein_coding		Encodes nonfunctional amino acid transporter.  AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.	amino acid permease 7;(source:Araport11)
AT4G04450.2	protein_coding		member of WRKY Transcription Factor; Group II-b	WRKY family transcription factor;(source:Araport11)
AT5G23810.5	protein_coding		Encodes nonfunctional amino acid transporter.  AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.	amino acid permease 7;(source:Araport11)
AT4G14760.2	protein_coding			kinase interacting (KIP1-like) family protein;(source:Araport11)
AT3G53830.3	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G53830.2	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT5G22130.3	protein_coding		member of Glycosyltransferase Family- 50	mannosyltransferase family protein;(source:Araport11)
AT4G09195.1	other_rna			None;(source:Araport11)
AT1G06953.1	long_noncoding_rna			None;(source:Araport11)
AT3G53830.4	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G09830.3	protein_coding		Encodes a member of subfamily VIIa of the receptor-like cytoplasmic kinases (RLCKs).  It contributes to pattern-triggered immunity in response to P. syringae.	Protein kinase superfamily protein;(source:Araport11)
AT3G60710.2	protein_coding		F-box family protein.	F-box family protein;(source:Araport11)
AT2G26515.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G45460.4	protein_coding			SMAD/FHA domain-containing protein;(source:Araport11)
AT5G54064.1	pseudogene			pseudogene of Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT1G08775.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G05607.1	long_noncoding_rna			None;(source:Araport11)
AT3G05135.1	long_noncoding_rna			None;(source:Araport11)
AT3G06235.1	long_noncoding_rna			None;(source:Araport11)
AT4G22270.2	protein_coding		Encodes a plasma membrane protein involved in the positive regulation of organ size development.  Overexpression results in organ size enlargement.	transmembrane protein, putative (DUF3537);(source:Araport11)
AT4G24610.3	protein_coding			pesticidal crystal cry8Ba protein;(source:Araport11)
AT5G00935.1	long_noncoding_rna			None;(source:Araport11)
AT5G09960.2	protein_coding			sorbin/SH3 domain protein;(source:Araport11)
AT5G09960.3	protein_coding			sorbin/SH3 domain protein;(source:Araport11)
AT3G57390.3	protein_coding		encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.	AGAMOUS-like 18;(source:Araport11)
AT2G19390.2	protein_coding			serine/arginine repetitive matrix protein;(source:Araport11)
AT1G21320.4	protein_coding			nucleic acid/nucleotide binding protein;(source:Araport11)
AT1G21320.5	protein_coding			nucleic acid/nucleotide binding protein;(source:Araport11)
AT1G05623.1	long_noncoding_rna			None;(source:Araport11)
AT1G21320.3	protein_coding			nucleic acid/nucleotide binding protein;(source:Araport11)
AT4G34340.2	protein_coding			TBP-associated factor 8;(source:Araport11)
AT3G01670.2	protein_coding		Encodes a protein localized to phloem filaments that is required for phloem filament formation.The mRNA is cell-to-cell mobile.	sieve element occlusion protein;(source:Araport11)
AT1G04277.1	small_nucleolar_rna			None;(source:Araport11)
AT5G05695.1	long_noncoding_rna			None;(source:Araport11)
AT3G27495.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G15430.2	protein_coding		Encodes a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V.	DNA-directed RNA polymerase family protein;(source:Araport11)
AT5G63120.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G63120.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G63120.5	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G06765.1	long_noncoding_rna			None;(source:Araport11)
AT3G17410.2	protein_coding		Positively regulates ABA-mediated physiological responses via phosphorylation on RCAR3/ RCAR11.	Protein kinase superfamily protein;(source:Araport11)
AT5G37250.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G17570.2	protein_coding			TatD related DNase;(source:Araport11)
AT4G03340.2	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G67520.2	protein_coding		Provides activated sulfate for the  sulfation of secondary metabolites, including the glucosinolates. Redundant with APK3.	adenosine-5-phosphosulfate (APS) kinase 4;(source:Araport11)
AT5G67520.3	protein_coding		Provides activated sulfate for the  sulfation of secondary metabolites, including the glucosinolates. Redundant with APK3.	adenosine-5-phosphosulfate (APS) kinase 4;(source:Araport11)
AT3G01490.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G05830.4	protein_coding		Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.	trithorax-like protein 2;(source:Araport11)
AT1G34065.2	protein_coding			S-adenosylmethionine carrier 2;(source:Araport11)
AT1G53570.7	protein_coding		Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK3 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens.	mitogen-activated protein kinase kinase kinase 3;(source:Araport11)
AT5G17510.2	protein_coding			mediator of RNA polymerase II transcription subunit-like protein;(source:Araport11)
AT4G07925.1	long_noncoding_rna			None;(source:Araport11)
AT1G55030.2	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT5G45920.4	protein_coding			SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT1G56310.2	protein_coding		DEDDy-type 3&#8242; -> 5&#8242; exoribonuclease involved in miRNA degradation.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G23060.2	protein_coding		Encodes a  chloroplast-localized protein that modulates cytoplasmic Ca2+ concentration and is crucial for proper stomatal regulation in response to elevations of external Ca2+. Phosphorylation of this protein is dependent on calcium.	calcium sensing receptor;(source:Araport11)
AT4G19590.3	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G45920.2	protein_coding			SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT5G45920.3	protein_coding			SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT1G43245.2	protein_coding			SET domain-containing protein;(source:Araport11)
AT5G20120.2	protein_coding			testis- and ovary-specific PAZ domain protein;(source:Araport11)
AT4G00760.2	protein_coding		Encodes a response-regulator like protein.	pseudo-response regulator 8;(source:Araport11)
AT4G26800.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G00440.4	protein_coding			GPI-anchored adhesin-like protein, putative (DUF3741);(source:Araport11)
AT2G04725.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G04160;(source:Araport11)
AT2G04725.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G04160;(source:Araport11)
AT2G23980.6	protein_coding		Encodes a cyclic GMP-activated non-selective cation channel in the plasma membrane of guard cells.	cyclic nucleotide-gated channel 6;(source:Araport11)
AT2G23980.3	protein_coding		Encodes a cyclic GMP-activated non-selective cation channel in the plasma membrane of guard cells.	cyclic nucleotide-gated channel 6;(source:Araport11)
AT2G23980.2	protein_coding		Encodes a cyclic GMP-activated non-selective cation channel in the plasma membrane of guard cells.	cyclic nucleotide-gated channel 6;(source:Araport11)
AT3G58100.2	protein_coding		Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.	plasmodesmata callose-binding protein 5;(source:Araport11)
AT2G23980.9	protein_coding		Encodes a cyclic GMP-activated non-selective cation channel in the plasma membrane of guard cells.	cyclic nucleotide-gated channel 6;(source:Araport11)
AT2G23980.8	protein_coding		Encodes a cyclic GMP-activated non-selective cation channel in the plasma membrane of guard cells.	cyclic nucleotide-gated channel 6;(source:Araport11)
AT5G20225.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G20220;(source:Araport11)
AT4G00695.4	protein_coding			Spc97/Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT1G15772.2	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT1G15772.3	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT3G13900.2	protein_coding		Encodes a member of the P4 subfamily of P-type ATPases expressed in the pollen plasma membrane.  Double mutants with ALA6 display pollen and pollen tube defects.	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT2G23420.2	protein_coding			nicotinate phosphoribosyltransferase 2;(source:Araport11)
AT5G03175.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G20510;(source:Araport11)
AT1G15772.4	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT2G04033.2	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of Putative membrane lipoprotein;(source:Araport11)
AT1G80810.5	protein_coding		One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT2G28550.5	protein_coding			related to AP2.7;(source:Araport11)
AT2G28550.4	protein_coding			related to AP2.7;(source:Araport11)
AT1G06007.1	long_noncoding_rna			None;(source:Araport11)
AT1G80960.4	protein_coding			F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G06260.2	protein_coding			TLD-domain containing nucleolar protein;(source:Araport11)
AT5G06260.3	protein_coding			TLD-domain containing nucleolar protein;(source:Araport11)
AT1G54870.2	protein_coding		ChlADR is an aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons in vitro. The N-terminal region of this protein directs GFP to the chloroplast where where ChlADR likely helps to maintain the photosynthetic process by detoxifying reactive carbonyls formed during lipid peroxidation. In addition, this enzyme can also reduce cis-3-hexenal, a major plant volatile compound that contributes to green leaf odor, as well as methylglyoxal in vitro.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G27390.2	protein_coding		Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins	translocase outer membrane 20-2;(source:Araport11)
AT5G10290.2	protein_coding			leucine-rich repeat transmembrane protein kinase family protein;(source:Araport11)
AT2G24980.3	protein_coding			Proline-rich extensin-like family protein;(source:Araport11)
AT1G47960.2	protein_coding		Plant cell wall (CWI) and vacuolar invertases (VI)  play important roles in carbohydrate metabolism, stress responses  and sugar signaling. This protein may inhibit their activity.	cell wall / vacuolar inhibitor of fructosidase 1;(source:Araport11)
AT5G10630.3	protein_coding		Transcripts of this gene are alternatively spliced to encode either HBS1, a decoding factor translational GTPase, or SKI7, a component of the cytosolic RNA exosome.	Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT1G09135.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G46590.uORF1	uORF			Derives_from AT5G46590;(source:Araport11)
AT5G10630.4	protein_coding		Transcripts of this gene are alternatively spliced to encode either HBS1, a decoding factor translational GTPase, or SKI7, a component of the cytosolic RNA exosome.	Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT5G10630.5	protein_coding		Transcripts of this gene are alternatively spliced to encode either HBS1, a decoding factor translational GTPase, or SKI7, a component of the cytosolic RNA exosome.	Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT5G65440.4	protein_coding			transmembrane protein;(source:Araport11)
AT5G55820.5	protein_coding		Encodes a plant ortholog of the inner centromere protein (INCENP), which is implicated in the control of chromosome segregation and cytokinesis in yeast and animals.  Required for female gametophytic cell specification and seed development.	inner centromere protein, ARK-binding region protein;(source:Araport11)
AT3G00780.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G07780.6	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT5G09065.1	long_noncoding_rna			None;(source:Araport11)
AT4G35920.4	protein_coding		Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium.	PLAC8 family protein;(source:Araport11)
AT4G35920.5	protein_coding		Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium.	PLAC8 family protein;(source:Araport11)
AT1G09705.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G59960.2	protein_coding			histone-lysine N-methyltransferase ASHH4;(source:Araport11)
AT2G09735.1	antisense_rna			Natural antisense transcript overlaps with AT2G46600;(source:Araport11)
AT3G09430.3	protein_coding			peptide transporter family protein;(source:Araport11)
AT5G04755.1	long_noncoding_rna			None;(source:Araport11)
AT5G11650.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G29450.2	protein_coding			SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G17530.2	protein_coding		Encodes a translocase of inner mitochondrial membrane.	translocase of inner mitochondrial membrane 23;(source:Araport11)
AT1G08277.1	long_noncoding_rna			None;(source:Araport11)
AT3G50810.2	protein_coding			Uncharacterized protein family (UPF0497);(source:Araport11)
AT1G35780.4	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT1G35780.3	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT1G35780.2	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT1G16240.4	protein_coding		Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.	syntaxin of plants 51;(source:Araport11)
AT2G34720.3	protein_coding			nuclear factor Y, subunit A4;(source:Araport11)
AT1G75380.4	protein_coding		Encodes a nuclease involved in ABA-mediated callose deposition.  It has been shown to interact with JAZ proteins, binds to a jasmonic acid-responsive element (JARE) and repress AtJMT expression.	bifunctional nuclease in basal defense response 1;(source:Araport11)
AT5G02520.3	protein_coding		Arabidopsis KNL2 localizes at chromocenters during all stages of the mitotic cell cycle, except from metaphase to mid-anaphase, and its level is strictly regulated by the proteasome degradation pathway. Knockout of KNL2 via a T-DNA insertion resulted in a reduced amount of centromeric cenH3, mitotic and meiotic abnormalities, and reduced growth and fertility.	dentin sialophosphoprotein-like protein;(source:Araport11)
AT3G19184.2	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT1G51420.4	protein_coding			sucrose-phosphatase 1;(source:Araport11)
AT5G16850.2	protein_coding		Encodes the catalytic subunit of telomerase reverse transcriptase. Involved in telomere homeostasis. Homozygous double mutants with ATR show gross morphological defects over a period of generations. TERT shows Class II telomerase activity in vitro, indicating that it can initiate de novo telomerase synthesis on non-telomeric DNA, often using a preferred position within the telomerase-bound RNA. Loss of function mutants have reduced telomere length in roots and over a period of generations, decreasing root meristem function.	telomerase reverse transcriptase;(source:Araport11)
AT4G05875.1	long_noncoding_rna			None;(source:Araport11)
AT1G51420.2	protein_coding			sucrose-phosphatase 1;(source:Araport11)
AT1G51420.3	protein_coding			sucrose-phosphatase 1;(source:Araport11)
AT3G07405.1	long_noncoding_rna			None;(source:Araport11)
AT4G13400.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G07950.2	protein_coding			Surfeit locus protein 5 subunit 22 of Mediator complex;(source:Araport11)
AT5G65440.6	protein_coding			transmembrane protein;(source:Araport11)
AT3G50590.2	protein_coding		WD40/YVTN repeat protein.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G60700.2	protein_coding			SMAD/FHA domain-containing protein;(source:Araport11)
AT1G30450.4	protein_coding		member of Cation-chloride co-transporter family	cation-chloride co-transporter 1;(source:Araport11)
AT2G35890.2	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 25;(source:Araport11)
AT1G06017.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G26750;(source:Araport11)
AT4G16900.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G04980.3	protein_coding			DNAse I-like superfamily protein;(source:Araport11)
AT4G29037.1	protein_coding			plant self-incompatibility protein S1 family protein;(source:Araport11)
AT3G02625.1	long_noncoding_rna			None;(source:Araport11)
AT5G04980.4	protein_coding			DNAse I-like superfamily protein;(source:Araport11)
AT4G09010.3	protein_coding		Encodes a thylakoid lumen protein that was initially believed to act as a microsomal ascorbate peroxidase APX4 but to date, no evidence of enzymatic activity has been found.	ascorbate peroxidase 4;(source:Araport11)
AT3G00930.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G07940.4	protein_coding			GTP binding Elongation factor Tu family protein;(source:Araport11)
AT4G32510.2	protein_coding			HCO3- transporter family;(source:Araport11)
AT4G08280.3	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT3G06935.1	long_noncoding_rna			None;(source:Araport11)
AT5G18240.6	protein_coding		Encodes MYR1 (MYR1).	myb-related protein 1;(source:Araport11)
AT1G07940.3	protein_coding			GTP binding Elongation factor Tu family protein;(source:Araport11)
AT1G56060.2	protein_coding		CYSTM3  is a mitochondrial protein that is induced by salt stress and is  a negative regulator of salt stress.	cysteine-rich/transmembrane domain protein B;(source:Araport11)
AT1G65050.2	protein_coding			TRAF-like superfamily protein;(source:Araport11)
AT1G09737.1	long_noncoding_rna			None;(source:Araport11)
AT5G01315.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G07120;(source:Araport11)
AT4G34570.4	protein_coding		Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene. This is unique in Arabidopsis and protozoa. Other organisms have independent genes for this function.	thymidylate synthase 2;(source:Araport11)
AT5G65613.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G08033.1	long_noncoding_rna			None;(source:Araport11)
AT5G04290.2	protein_coding		Encodes SPT5-Like, a member of the nuclear SPT5 (Suppressor of Ty insertion 5) RNA polymerase (RNAP) elongation factor family that is characterized by the presence of a carboxy-terminal extension with more than 40 WG/GW motifs.  Interacts with AGO4. Required for RNA-directed DNA methylation.The mRNA is cell-to-cell mobile.	kow domain-containing transcription factor 1;(source:Araport11)
AT5G08490.8	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G47840.2	protein_coding		Encodes a putative hexokinase.	hexokinase 3;(source:Araport11)
AT2G18160.uORF1	uORF			Derives_from AT2G18160;(source:Araport11)
AT5G63490.2	protein_coding			CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein;(source:Araport11)
AT1G04653.1	long_noncoding_rna			None;(source:Araport11)
AT1G08877.1	long_noncoding_rna			None;(source:Araport11)
AT1G47278.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G60250.3	protein_coding		Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in Arabidopsis	casein kinase II beta chain 3;(source:Araport11)
AT1G08630.6	protein_coding		Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.	threonine aldolase 1;(source:Araport11)
AT5G07945.1	long_noncoding_rna			None;(source:Araport11)
AT5G42010.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G13730.2	protein_coding			Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT1G45010.4	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT5G02175.1	long_noncoding_rna			None;(source:Araport11)
AT5G00690.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G07515.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G22090;(source:Araport11)
AT1G45010.3	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G08023.1	long_noncoding_rna			None;(source:Araport11)
AT1G09727.1	novel_transcribed_region			novel transcribed region; detected in root, root apical meristem, receptacle, dark-grown seedling;(source:Araport11)
AT2G27790.4	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G09265.1	long_noncoding_rna			None;(source:Araport11)
AT5G08825.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G58310;(source:Araport11)
AT2G27790.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G04955.2	protein_coding		Encodes an allantoinase which is involved in allantoin degradation and assimilation. Gene expression was induced when allantoin was added to the medium. The insertion mutant, ataln m2-1, did not grow well on the MS medium where allantoin, instead of ammonium nitrate, was supplied.	allantoinase;(source:Araport11)
AT1G08390.2	protein_coding		Involved in preserving the stability of 45S  rDNA repeats.	recQ-mediated instability-like protein;(source:Araport11)
AT3G06275.1	long_noncoding_rna			None;(source:Araport11)
AT4G18070.7	protein_coding			suppressor;(source:Araport11)
AT4G02350.2	protein_coding		Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.The mRNA is cell-to-cell mobile.	exocyst complex component sec15B;(source:Araport11)
AT3G08380.1	long_noncoding_rna			None;(source:Araport11)
AT2G29690.2	protein_coding		Encode a functional anthranilate synthase protein. Expressed at a constitutive basal level. Expression was not induced by wounding nor bacterial pathogen infiltration. Involved in aromatic amino acid biosynthesis.	anthranilate synthase 2;(source:Araport11)
AT4G05430.2	protein_coding			Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT1G64980.3	protein_coding		Encodes a putative nucleotide-diphospho-sugar transferase required for pollen germination and tube growth.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT1G64980.2	protein_coding		Encodes a putative nucleotide-diphospho-sugar transferase required for pollen germination and tube growth.	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT1G59470.1	protein_coding			B-block-binding subunit of TFIIIC protein;(source:Araport11)
AT3G04460.2	protein_coding		RING finger protein involved in peroxisome biogenesis.  Also involved in peroxisomal import of nitric oxide synthase. Has been demonstrated to have E3 ubiquitin ligase activity.	peroxin-12;(source:Araport11)
AT3G25570.uORF1-2	uORF			Derives_from AT3G25570;(source:Araport11)
AT4G01100.3	protein_coding		Adenine nucleotide transporter. Located in mitochondrion. Expressed in a broad range of tissues, but predominantly in root tips. Loss of function mutants exhibit reduced root growth and respiration.	adenine nucleotide transporter 1;(source:Araport11)
AT1G77360.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G62220.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G05493.1	long_noncoding_rna			None;(source:Araport11)
AT5G01950.4	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G04977.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G12820;(source:Araport11)
AT2G19890.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G63640.3	protein_coding			P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT3G26440.5	protein_coding			transmembrane protein, putative (DUF707);(source:Araport11)
AT1G63640.5	protein_coding			P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT1G19565.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G13190.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G30390.3	protein_coding		Encodes a putative amino acid transporter.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT2G39740.2	protein_coding		Encodes HESO1 (HEN1 suppressor 1), a terminal nucleotidyl transferase that uridylates miRNAs and siRNAs at 3&#8242; end. HESO1-mediated 3&#8242; uridylation destabilizes small RNAs in hen1.	Nucleotidyltransferase family protein;(source:Araport11)
AT5G09875.1	long_noncoding_rna			None;(source:Araport11)
AT4G32460.3	protein_coding		BDX is a DUF642 cell wall protein primarily expressed in vascular tissues of roots, leaves and embryos. Mutants show defects in seed and embryo development.	choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT1G04930.3	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G03670.2	protein_coding			histone-lysine N-methyltransferase SETD1B-like protein;(source:Araport11)
AT4G32460.4	protein_coding		BDX is a DUF642 cell wall protein primarily expressed in vascular tissues of roots, leaves and embryos. Mutants show defects in seed and embryo development.	choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642);(source:Araport11)
AT1G08765.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G35520.2	protein_coding		DNA mismatch repair protein similar to MutL. Required for normal levels of meiotic crossovers	MUTL protein homolog 3;(source:Araport11)
AT4G33150.4	protein_coding		This is a splice variant of the LKR/SDH locus. It encodes a bifunctional polypeptide lysine-ketoglutarate reductase and saccharopine dehydrogenase involved in lysine degradation. There is another splice variant that encodes a mono saccharopine dehydrogenase protein. Gene expression is induced by abscisic acid, jasmonate, and under sucrose starvation.	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme;(source:Araport11)
AT1G32180.2	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase-like D6;(source:Araport11)
AT1G08477.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G62180;(source:Araport11)
AT4G35520.6	protein_coding		DNA mismatch repair protein similar to MutL. Required for normal levels of meiotic crossovers	MUTL protein homolog 3;(source:Araport11)
AT1G07193.1	long_noncoding_rna			None;(source:Araport11)
AT4G35520.4	protein_coding		DNA mismatch repair protein similar to MutL. Required for normal levels of meiotic crossovers	MUTL protein homolog 3;(source:Araport11)
AT4G35520.5	protein_coding		DNA mismatch repair protein similar to MutL. Required for normal levels of meiotic crossovers	MUTL protein homolog 3;(source:Araport11)
AT3G62130.2	protein_coding		Encodes an enzyme that decomposes L-cysteine into pyruvate, H2S, and NH3.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT5G57110.3	protein_coding		Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.	autoinhibited Ca2+ -ATPase, isoform 8;(source:Araport11)
AT4G35520.8	protein_coding		DNA mismatch repair protein similar to MutL. Required for normal levels of meiotic crossovers	MUTL protein homolog 3;(source:Araport11)
AT5G61230.uORF1	uORF			Derives_from AT5G61230;(source:Araport11)
AT3G19330.4	protein_coding			transmembrane protein, putative (DUF677);(source:Araport11)
AT3G00950.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G39970.2	protein_coding			catalytics;(source:Araport11)
AT5G56330.2	protein_coding			alpha carbonic anhydrase 8;(source:Araport11)
AT5G08215.1	long_noncoding_rna			None;(source:Araport11)
AT4G03180.2	protein_coding			rRNA-processing protein;(source:Araport11)
AT4G18950.2	protein_coding		BHP1 is a Raf-like protein kinase involved in mediating blue light dependent stomatal opening.	Integrin-linked protein kinase family;(source:Araport11)
AT5G61190.5	protein_coding			putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein;(source:Araport11)
AT1G04163.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G03100;(source:Araport11)
AT1G05200.3	protein_coding		Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.	glutamate receptor 3.4;(source:Araport11)
AT5G61190.4	protein_coding			putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein;(source:Araport11)
AT1G05200.5	protein_coding		Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.	glutamate receptor 3.4;(source:Araport11)
AT1G05200.4	protein_coding		Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.	glutamate receptor 3.4;(source:Araport11)
AT1G05200.7	protein_coding		Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.	glutamate receptor 3.4;(source:Araport11)
AT1G05200.6	protein_coding		Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.	glutamate receptor 3.4;(source:Araport11)
AT5G61190.3	protein_coding			putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein;(source:Araport11)
AT2G04005.1	long_noncoding_rna			None;(source:Araport11)
AT1G61430.2	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT3G26600.2	protein_coding		Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules.	armadillo repeat only 4;(source:Araport11)
AT5G07090.3	protein_coding			Ribosomal protein S4 (RPS4A) family protein;(source:Araport11)
AT4G31750.3	protein_coding		Encodes HopW1-1-Interacting protein 2 (WIN2).  Interacts with the P. syringae effector HopW1-1.  WIN2 has protein phosphatase activity.  Modulates plant defenses against bacteria.  Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).	HOPW1-1-interacting 2;(source:Araport11)
AT3G62750.8	protein_coding		Encodes a putative beta glucosidase, expressed in the peroxisome.	beta glucosidase 8;(source:Araport11)
AT3G62750.6	protein_coding		Encodes a putative beta glucosidase, expressed in the peroxisome.	beta glucosidase 8;(source:Araport11)
AT3G62750.7	protein_coding		Encodes a putative beta glucosidase, expressed in the peroxisome.	beta glucosidase 8;(source:Araport11)
AT3G62750.4	protein_coding		Encodes a putative beta glucosidase, expressed in the peroxisome.	beta glucosidase 8;(source:Araport11)
AT3G62750.5	protein_coding		Encodes a putative beta glucosidase, expressed in the peroxisome.	beta glucosidase 8;(source:Araport11)
AT3G62750.2	protein_coding		Encodes a putative beta glucosidase, expressed in the peroxisome.	beta glucosidase 8;(source:Araport11)
AT3G62750.3	protein_coding		Encodes a putative beta glucosidase, expressed in the peroxisome.	beta glucosidase 8;(source:Araport11)
AT1G08937.1	small_nucleolar_rna			None;(source:Araport11)
AT4G24590.5	protein_coding			RING finger protein;(source:Araport11)
AT4G24590.4	protein_coding			RING finger protein;(source:Araport11)
AT2G00790.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00790.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09440.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G24590.3	protein_coding			RING finger protein;(source:Araport11)
AT5G24270.4	protein_coding		encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B.  Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.	Calcium-binding EF-hand family protein;(source:Araport11)
AT3G01985.1	long_noncoding_rna			None;(source:Araport11)
AT4G09720.6	protein_coding			RAB GTPase homolog G3A;(source:Araport11)
AT4G17440.3	protein_coding			chromogranin (DUF1639);(source:Araport11)
AT4G34390.2	protein_coding			extra-large GTP-binding protein 2;(source:Araport11)
AT4G17440.4	protein_coding			chromogranin (DUF1639);(source:Araport11)
AT5G50565.6	protein_coding			hypothetical protein;(source:Araport11)
AT5G50565.5	protein_coding			hypothetical protein;(source:Araport11)
AT5G50565.4	protein_coding			hypothetical protein;(source:Araport11)
AT5G50565.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G01675.1	antisense_long_noncoding_rna		Small RNA-induced heterochromatic region at the end of FLC which produces cold-induced FLC antisense lncRNA transcripts. Represses FLOWERING LOCUS C (FLC) transcription with increased H3K27me3 and decreased H3K36me3 levels in response to cold temperatures. FCA binding of COOLAIR and SSU72 is critical for PRC2 enrichment and H3K27me3 deposition.	Natural antisense transcript overlaps with AT5G10140 (FLC);(source:Araport11)
AT5G36170.4	protein_coding		Required for normal processing of polycistronic plastidial transcripts	high chlorophyll fluorescent 109;(source:Araport11)
AT3G03835.1	long_noncoding_rna			None;(source:Araport11)
AT1G17255.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17250;(source:Araport11)
AT2G00780.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G02730.3	protein_coding			GRIP/coiled-coil protein, putative (DUF1664);(source:Araport11)
AT3G09040.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G09040.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G27450.4	protein_coding		Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP.	adenine phosphoribosyl transferase 1;(source:Araport11)
AT3G09040.4	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G01420.2	protein_coding		Encodes calcineurin B-like protein 5 (CBL5). Overexpression confers tolerance to drought and salt stress.	calcineurin B-like protein 5;(source:Araport11)
AT3G03475.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G17390;(source:Araport11)
AT4G08635.1	long_noncoding_rna			None;(source:Araport11)
AT4G30340.2	protein_coding		encodes a diacylglycerol kinase. Applying  a specific diacylglycerol kinase inhibitor to the growth media resulted in reduced root elongation and plant growth. Gene is expressed throughout the plant but is strongest in flowers and young seedlings.	diacylglycerol kinase 7;(source:Araport11)
AT5G62950.6	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT5G62950.7	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT1G04803.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G10530;(source:Araport11)
AT2G08795.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G36400;(source:Araport11)
AT2G34740.3	protein_coding			protein phosphatase 2C family protein;(source:Araport11)
AT4G01440.3	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G20380.2	protein_coding			Prolyl oligopeptidase family protein;(source:Araport11)
AT4G01440.4	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G01440.5	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G20480.4	protein_coding			tetraacyldisaccharide 4-kinase family protein;(source:Araport11)
AT3G20480.5	protein_coding			tetraacyldisaccharide 4-kinase family protein;(source:Araport11)
AT3G03755.1	long_noncoding_rna			None;(source:Araport11)
AT2G17780.10	protein_coding		Encodes a mechanosensitive channel candidate MCA2. The three-dimensional structure of MCA2 was reconstructed and appears to comprise a small transmembrane region and large cytoplasmic region.	PLAC8 family protein;(source:Araport11)
AT3G20480.3	protein_coding			tetraacyldisaccharide 4-kinase family protein;(source:Araport11)
AT4G16540.3	protein_coding			Heat shock protein HSP20/alpha crystallin family;(source:Araport11)
AT4G16540.2	protein_coding			Heat shock protein HSP20/alpha crystallin family;(source:Araport11)
AT4G16540.4	protein_coding			Heat shock protein HSP20/alpha crystallin family;(source:Araport11)
AT5G34795.2	pseudogene			pseudogene of K-box region protein (DUF1985);(source:Araport11)
AT3G21340.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G02170.3	protein_coding		Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction.  The LNG2 homologue LNG1 (At5g15580) has similar function.	longifolia2;(source:Araport11)
AT1G09945.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09945.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G06907.1	long_noncoding_rna			None;(source:Araport11)
AT2G24520.2	protein_coding			plasma membrane H+-ATPase;(source:Araport11)
AT2G24520.3	protein_coding			plasma membrane H+-ATPase;(source:Araport11)
AT4G29900.2	protein_coding		one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.	autoinhibited Ca(2+)-ATPase 10;(source:Araport11)
AT2G25320.3	protein_coding			TRAF-like family protein;(source:Araport11)
AT2G25320.2	protein_coding			TRAF-like family protein;(source:Araport11)
AT2G24520.4	protein_coding			plasma membrane H+-ATPase;(source:Araport11)
AT2G08580.1	small_nucleolar_rna			None;(source:Araport11)
AT2G26400.3	protein_coding		Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD?)family.	acireductone dioxygenase 3;(source:Araport11)
AT2G26400.2	protein_coding		Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD?)family.	acireductone dioxygenase 3;(source:Araport11)
AT1G58223.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G14147.3	protein_coding		actin-related protein 2/3 complex 34kDa subunit family / arp2/3 complex 34kDa subunit family	binding protein;(source:Araport11)
AT1G05127.1	long_noncoding_rna			None;(source:Araport11)
AT2G26400.4	protein_coding		Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD?)family.	acireductone dioxygenase 3;(source:Araport11)
AT1G65490.2	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT4G34720.2	protein_coding		vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1)	ATPase, F0/V0 complex, subunit C protein;(source:Araport11)
AT1G60200.3	protein_coding		RMB25 is an alternative splicing factor involved in mediation of abiotic stress response and ABA response. Its expression is modulated by a variety of stressors and it in turn appears to affect the ratio of splice variants of stress responsive genes such as HAB1.2/HAB1.1.	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT1G09965.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G07790.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G14090.2	protein_coding		LAZY1 is required for gravitropic response. Mutants have abnormal shoot angles and abnormal root gravitropism. LZY1 affects the redistribution of auxin in response to gravity in shoots and roots via an unknown mechanism.	regulator of nonsense transcript protein;(source:Araport11)
AT3G18520.4	protein_coding		Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation.	histone deacetylase 15;(source:Araport11)
AT1G06243.1	small_nucleolar_rna			None;(source:Araport11)
AT5G04620.3	protein_coding		The cDNA encoding 7-keto-8-aminopelargonic acid (KAPA) synthase, the first committed enzyme of the biotin synthesis pathway has been cloned and its molecular function confirmed (functional complementation of an E. coli mutant). The subcellular localization of the enzyme (cytosol) proves that the biotin biosynthesis in plants takes place in different compartments which differs from the biosynthetic route found in microorganisms.	biotin F;(source:Araport11)
AT2G38710.4	protein_coding			AMMECR1 family;(source:Araport11)
AT3G18520.3	protein_coding		Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation.	histone deacetylase 15;(source:Araport11)
AT3G48670.3	protein_coding		Encodes IDN2 (INVOLVED IN DE NOVO 2), a double-stranded RNA-binding protein involved in de novo methylation and small interfering RNA (siRNA)-mediated maintenance methylation. IND2 is a component of the RNA-directed DNA methylation pathway.	XH/XS domain-containing protein;(source:Araport11)
AT2G31900.5	protein_coding		Encodes an novel myosin isoform.	myosin-like protein XIF;(source:Araport11)
AT2G31900.2	protein_coding		Encodes an novel myosin isoform.	myosin-like protein XIF;(source:Araport11)
AT2G31900.3	protein_coding		Encodes an novel myosin isoform.	myosin-like protein XIF;(source:Araport11)
AT3G59630.3	protein_coding			diphthamide synthesis DPH2 family protein;(source:Araport11)
AT4G30130.2	protein_coding			DUF630 family protein (DUF630 and DUF632);(source:Araport11)
AT5G04935.1	miRNA_primary_transcript			microRNA ath-MIR854b precursor;(source:Araport11)
AT3G28720.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G07637.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G50440;(source:Araport11)
AT4G05980.1	long_noncoding_rna			None;(source:Araport11)
AT1G63960.2	protein_coding			Copper transport protein family;(source:Araport11)
AT3G06735.1	long_noncoding_rna			None;(source:Araport11)
AT1G51880.2	protein_coding			root hair specific 6;(source:Araport11)
AT1G51880.3	protein_coding			root hair specific 6;(source:Araport11)
AT2G40160.3	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT4G12020.5	protein_coding		Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301.	protein kinase family protein;(source:Araport11)
AT5G18000.2	protein_coding		Encodes VERDANDI (VDD), a putative transcription factor belonging to the reproductive meristem (REM) family.  VDD is a direct target of the MADS domain ovule identity complex.  Mutation in VDD affects embryo sac differentiation.	VERDANDI;(source:Araport11)
AT2G23660.3	protein_coding			LOB domain-containing protein 10;(source:Araport11)
AT1G34460.4	protein_coding		B1 type cyclin	CYCLIN B1;(source:Araport11)
AT3G00640.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G24080.2	protein_coding			aldolase like;(source:Araport11)
AT3G55980.2	protein_coding			salt-inducible zinc finger 1;(source:Araport11)
AT3G09660.2	protein_coding		Encodes a minichromosome maintenance protein that is involved with RAD51 in a backup pathway that repairs meiotic double strand breaks without giving meiotic crossovers when the major pathway, which relies on DMC1, fails.	minichromosome maintenance 8;(source:Araport11)
AT1G58230.3	protein_coding			binding protein;(source:Araport11)
AT1G04407.1	long_noncoding_rna			None;(source:Araport11)
AT1G05933.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G25220;(source:Araport11)
AT2G09380.1	long_noncoding_rna			None;(source:Araport11)
AT1G62290.3	protein_coding			Saposin-like aspartyl protease family protein;(source:Araport11)
AT3G60440.2	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT2G45660.2	protein_coding		Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA.	AGAMOUS-like 20;(source:Araport11)
AT3G02475.1	antisense_rna			Natural antisense transcript overlaps with AT3G11591;(source:Araport11)
AT3G00460.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G15650.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G45880.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G51895.2	protein_coding		Encodes a chloroplast-localized sulfate transporter.	sulfate transporter 3;(source:Araport11)
AT5G00645.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00645.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G26380.2	protein_coding		APSE is a member of the Glycoside Hydrolase (GH27) family that functions as a &#946;-l-arabinopyranosidase.	Melibiase family protein;(source:Araport11)
AT2G18340.3	protein_coding			late embryogenesis abundant domain-containing protein / LEA domain-containing protein;(source:Araport11)
AT1G05590.3	protein_coding		Encodes a protein with &#946;-hexosaminidase activity (the enzyme is active with p-nitrophenyl-&#946;-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-&#946;-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.	beta-hexosaminidase 2;(source:Araport11)
AT1G05590.2	protein_coding		Encodes a protein with &#946;-hexosaminidase activity (the enzyme is active with p-nitrophenyl-&#946;-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-&#946;-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.	beta-hexosaminidase 2;(source:Araport11)
AT4G34590.uORF1	uORF			Derives_from AT4G34590;(source:Araport11)
AT5G45455.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G06135.1	long_noncoding_rna			None;(source:Araport11)
AT1G31600.4	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G09260.1	long_noncoding_rna			None;(source:Araport11)
AT1G75390.uORF1	uORF			Derives_from AT1G75390;(source:Araport11)
AT5G23570.4	protein_coding		Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an  Primeunknown Prime protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript.  Acts before RDR6 in this pathway.The mRNA is cell-to-cell mobile.	XS domain-containing protein / XS zinc finger domain-containing protein-like protein;(source:Araport11)
AT1G16540.2	protein_coding		Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA, the last step of abscisic acid (ABA) biosynthesis. <i>sir</i> loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer.  Also involved in protein import into chloroplasts.	molybdenum cofactor sulfurase (LOS5) (ABA3);(source:Araport11)
AT1G16540.3	protein_coding		Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA, the last step of abscisic acid (ABA) biosynthesis. <i>sir</i> loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer.  Also involved in protein import into chloroplasts.	molybdenum cofactor sulfurase (LOS5) (ABA3);(source:Araport11)
AT2G02790.3	protein_coding		Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 29;(source:Araport11)
AT2G02790.2	protein_coding		Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 29;(source:Araport11)
AT2G05445.1	long_noncoding_rna			None;(source:Araport11)
AT3G22220.4	protein_coding			hAT transposon superfamily;(source:Araport11)
AT1G33350.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G17640.2	protein_coding		Belongs to a member of the RNA-binding glycine-rich (RBG) gene superfamily.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G17640.3	protein_coding		Belongs to a member of the RNA-binding glycine-rich (RBG) gene superfamily.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G20410.2	protein_coding			RNA-binding ASCH domain protein;(source:Araport11)
AT3G00580.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G01020.4	protein_coding			ARV1 family protein;(source:Araport11)
AT1G05657.1	long_noncoding_rna			None;(source:Araport11)
AT5G23510.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G01695.1	small_nuclear_rna			U1;(source:Araport11)
AT1G78955.2	protein_coding		Encodes a cyclase that generates predominantly a monocyclic triterpene alcohol. The product is 97% camelliol, 2% achilleol A and 0.2% beta-amyrin. Achilleol is an isomer of camelliol C with a 4-methylenecyclohexanol ring system.	camelliol C synthase 1;(source:Araport11)
AT1G78955.3	protein_coding		Encodes a cyclase that generates predominantly a monocyclic triterpene alcohol. The product is 97% camelliol, 2% achilleol A and 0.2% beta-amyrin. Achilleol is an isomer of camelliol C with a 4-methylenecyclohexanol ring system.	camelliol C synthase 1;(source:Araport11)
AT1G78955.4	protein_coding		Encodes a cyclase that generates predominantly a monocyclic triterpene alcohol. The product is 97% camelliol, 2% achilleol A and 0.2% beta-amyrin. Achilleol is an isomer of camelliol C with a 4-methylenecyclohexanol ring system.	camelliol C synthase 1;(source:Araport11)
AT1G78955.5	protein_coding		Encodes a cyclase that generates predominantly a monocyclic triterpene alcohol. The product is 97% camelliol, 2% achilleol A and 0.2% beta-amyrin. Achilleol is an isomer of camelliol C with a 4-methylenecyclohexanol ring system.	camelliol C synthase 1;(source:Araport11)
AT1G19540.2	protein_coding			NmrA-like negative transcriptional regulator family protein;(source:Araport11)
AT3G44695.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G04835.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G24870;(source:Araport11)
AT1G01660.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G04285.1	long_noncoding_rna			None;(source:Araport11)
AT5G10900.2	protein_coding			Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT2G21510.3	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT2G21510.4	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G65110.2	protein_coding			Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT3G07090.2	protein_coding			PPPDE putative thiol peptidase family protein;(source:Araport11)
AT3G09175.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G59040;(source:Araport11)
AT5G17000.2	protein_coding			Zinc-binding dehydrogenase family protein;(source:Araport11)
AT1G07737.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G51400;(source:Araport11)
AT1G07050.2	protein_coding		FITNESS encodes a protein with a single CCT domain and belongs to the CCT motif family genes (CMF). FITNESS acts upstream JUB1 thereby controlling H2O2 levels. FITNESS has a role in cellular redox homeostasis controlling H2O2 levels, due to changes in enzymes, metabolites and transcripts related to ROS detoxification.	CCT motif family protein;(source:Araport11)
AT3G49330.2	protein_coding			Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT3G10700.2	protein_coding		Encodes a GHMP kinase family protein that acts as a galacturonic acid-1-phosphate kinase that catalyzes the production of galacturonic acid-1-phosphate. This is a precursor of the important cell wall building block UDP-galacturonic acid.  Based on gene trap line GT8007, the gene appears to be expressed in a petal and stamen-specific manner, between flower stages 8 to 11, however, later RT-qPCR analysis demonstrates that the transcript is present throughout the plant in all tissues tested.	galacturonic acid kinase;(source:Araport11)
AT3G10700.3	protein_coding		Encodes a GHMP kinase family protein that acts as a galacturonic acid-1-phosphate kinase that catalyzes the production of galacturonic acid-1-phosphate. This is a precursor of the important cell wall building block UDP-galacturonic acid.  Based on gene trap line GT8007, the gene appears to be expressed in a petal and stamen-specific manner, between flower stages 8 to 11, however, later RT-qPCR analysis demonstrates that the transcript is present throughout the plant in all tissues tested.	galacturonic acid kinase;(source:Araport11)
AT1G05867.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G24280;(source:Araport11)
AT5G02375.1	long_noncoding_rna			None;(source:Araport11)
AT3G44480.4	protein_coding		Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G44480.5	protein_coding		Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G44480.2	protein_coding		Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G44480.3	protein_coding		Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G52347.2	other_rna			None;(source:Araport11)
AT1G06750.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G09015.1	long_noncoding_rna			None;(source:Araport11)
AT3G62940.5	protein_coding			Cysteine proteinases superfamily protein;(source:Araport11)
AT3G62940.4	protein_coding			Cysteine proteinases superfamily protein;(source:Araport11)
AT4G30730.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G63200.2	protein_coding			tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT1G71150.2	protein_coding			cyclin-D1-binding protein;(source:Araport11)
AT3G01845.1	long_noncoding_rna			None;(source:Araport11)
AT4G05065.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G05060;(source:Araport11)
AT3G08545.1	long_noncoding_rna			None;(source:Araport11)
AT2G32040.2	protein_coding		The At2g32040 gene product has been demonstrated to mediate folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. The gene is expressed in both chloroplast and non-green plastids.	Major facilitator superfamily protein;(source:Araport11)
AT3G20090.2	protein_coding			cytochrome P450, family 705, subfamily A, polypeptide 18;(source:Araport11)
AT3G61028.3	protein_coding			Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT4G15562.1	protein_coding			superoxide dismutase 1 copper chaperone-like protein;(source:Araport11)
AT2G45243.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G00955.1	long_noncoding_rna			None;(source:Araport11)
AT3G53400.uORF1	uORF			Derives_from AT3G53400;(source:Araport11)
AT2G42475.1	protein_coding			MATH domain/coiled-coil protein;(source:Araport11)
AT4G39600.2	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G09140.1	small_nuclear_rna			U6;(source:Araport11)
AT4G08815.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G33666;(source:Araport11)
AT5G06835.1	small_nucleolar_rna			None;(source:Araport11)
AT3G11165.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G07997.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G54790;(source:Araport11)
AT4G00480.3	protein_coding		MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G24020.2	protein_coding		Encodes NIN Like Protein 7 (NLP7).  Modulates nitrate sensing and metabolism.  Mutants of NLP7 show features of nitrogen-starved plants and are tolerant to drought stress.  Localized in the nucleus and functions as a putative transcription factor.The mRNA is cell-to-cell mobile.	NIN like protein 7;(source:Araport11)
AT3G60150.2	protein_coding			NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598);(source:Araport11)
AT3G60150.3	protein_coding			NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598);(source:Araport11)
AT3G60150.4	protein_coding			NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598);(source:Araport11)
AT2G44950.2	protein_coding		The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.	histone mono-ubiquitination 1;(source:Araport11)
AT5G01835.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G10840;(source:Araport11)
AT2G01755.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G09573.1	long_noncoding_rna			None;(source:Araport11)
AT1G18270.4	protein_coding			ketose-bisphosphate aldolase class-II family protein;(source:Araport11)
AT4G32430.2	protein_coding		GRS1 is a mitochondrial PLS-type PRR protein  required for RNA editing and plant development.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G45870.8	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G45870.9	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G02525.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G12490;(source:Araport11)
AT5G37170.2	protein_coding			O-methyltransferase family protein;(source:Araport11)
AT5G00540.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G45870.6	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G45870.7	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G09495.1	small_nucleolar_rna			None;(source:Araport11)
AT4G04125.1	miRNA_primary_transcript			microRNA ath-MIR2936 precursor;(source:Araport11)
AT1G15890.2	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT3G42153.1	protein_coding			glycosyl hydrolase 9B9 protein;(source:Araport11)
AT5G02595.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G16830;(source:Araport11)
AT1G07987.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G54710;(source:Araport11)
AT2G37050.4	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G38380.5	protein_coding			MATE efflux family protein;(source:Araport11)
AT5G42710.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G07445.1	long_noncoding_rna			None;(source:Araport11)
AT4G17680.3	protein_coding			SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT2G23050.2	protein_coding		A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590).  Involved in auxin-mediated organogenesis.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT4G38380.3	protein_coding			MATE efflux family protein;(source:Araport11)
AT5G05975.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G39510;(source:Araport11)
AT5G43660.5	protein_coding		Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G43660.4	protein_coding		Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G38160.5	protein_coding			hypothetical protein;(source:Araport11)
AT2G38160.4	protein_coding			hypothetical protein;(source:Araport11)
AT2G09135.1	long_noncoding_rna			None;(source:Araport11)
AT5G04810.2	protein_coding		Pentatricopeptide which is essential during the early stages of embryo development and acts in the plastid nucleoids as the factor responsible of rps12 intron 1 trans-splicing and, indirectly, in the assembly of 70S ribosomes and plastid translation.	pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT5G43660.3	protein_coding		Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G52440.2	protein_coding			Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT2G20585.5	protein_coding			nuclear fusion defective 6;(source:Araport11)
AT2G20585.4	protein_coding			nuclear fusion defective 6;(source:Araport11)
AT2G20585.7	protein_coding			nuclear fusion defective 6;(source:Araport11)
AT2G20585.6	protein_coding			nuclear fusion defective 6;(source:Araport11)
AT4G29750.2	protein_coding			CRS1 / YhbY (CRM) domain-containing protein;(source:Araport11)
AT5G43630.3	protein_coding		Encodes a zinc knuckle protein that negatively regulates morning specific growth. The role of TZP in hypocotyl elongation was established through a QTL analysis of BayXSha RIL populations. The Bay-0 allele contains a deletion causing a frameshift mutation. TZP is under circadian control and acts to regulate morning-specific hypocotyl growth.The mRNA is cell-to-cell mobile. Gene ontology analysis of common promoter targets suggests an active role in the transcriptional regulation of gene expression in response to environmental, biotic, abiotic, and endogenous stimuli. Promoter regions show a huge over-representation in proteins involved in transcription, clock, flowering, and light signaling components, reflecting its involvement in regulating gene expression in response to environmental stimuli such as light and temperature. Coassociates with and regulates the expression of light-regulated loci as well as transcriptional regulators to shape plant development in response to environmental stimuli. Requires, at least in part, ZFHD10 for function with regard to blue-light-regulated hypocotyl elongation.	zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT4G19510.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G53340.3	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G21590.2	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT4G12740.2	protein_coding			HhH-GPD base excision DNA repair family protein;(source:Araport11)
AT5G44100.2	protein_coding		Member of CKL gene family. Expression up-regulated under high temperature in anthers. Transcription activated by MYB24.	casein kinase I-like 7;(source:Araport11)
AT3G09795.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G62580;(source:Araport11)
AT2G34150.4	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT1G07770.3	protein_coding		Encodes cytoplasmic ribosomal protein S15a.	ribosomal protein S15A;(source:Araport11)
AT1G49730.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G14110.2	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G34150.5	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT3G28853.1	protein_coding			B3 DNA-binding domain protein;(source:Araport11)
AT1G34403.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G02120.5	protein_coding		Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT4G07395.1	long_noncoding_rna		Long non-coding RNA involved in freezing response through suppression of CBF1 by RNAPII collision stemming from the SVALKA-asCBF1 lncRNA cascade.	None;(source:Araport11)
AT1G80190.4	protein_coding		Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.	partner of SLD five 1;(source:Araport11)
AT1G80190.5	protein_coding		Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.	partner of SLD five 1;(source:Araport11)
AT1G80190.2	protein_coding		Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.	partner of SLD five 1;(source:Araport11)
AT1G80190.3	protein_coding		Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.	partner of SLD five 1;(source:Araport11)
AT1G33030.2	protein_coding			O-methyltransferase family protein;(source:Araport11)
AT4G07255.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G24350;(source:Araport11)
AT5G08735.1	long_noncoding_rna			None;(source:Araport11)
AT5G66675.3	protein_coding			transmembrane protein, putative (DUF677);(source:Araport11)
AT1G06667.1	small_nucleolar_rna			None;(source:Araport11)
AT5G02620.5	protein_coding		Encodes a member of the ankyrin repeat protein.  Localized in the endoplasmic reticulum.	ankyrin-like1;(source:Araport11)
AT5G25440.2	protein_coding		Receptor like kinase involved in HopZ1a effector triggered immunity. Interacts with ZAR1. Localization to membrane is dependent on N-terminal myristoylation domain.	Protein kinase superfamily protein;(source:Araport11)
AT3G03010.4	protein_coding			Peptidyl-tRNA hydrolase II (PTH2) family protein;(source:Araport11)
AT3G03010.5	protein_coding			Peptidyl-tRNA hydrolase II (PTH2) family protein;(source:Araport11)
AT1G28150.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G00060.3	protein_coding			Nucleotidyltransferase family protein;(source:Araport11)
AT1G01370.3	protein_coding		Encodes a centromere-identifying  protein histone H3 variant. Localized at centromeres in both mitotic and  meiotic cells. Aurora3 phosphorylates CENH3 at S65; this post-translational modification is required for the proper development of the floral meristem.	Histone superfamily protein;(source:Araport11)
AT1G07177.1	long_noncoding_rna			None;(source:Araport11)
AT1G01370.4	protein_coding		Encodes a centromere-identifying  protein histone H3 variant. Localized at centromeres in both mitotic and  meiotic cells. Aurora3 phosphorylates CENH3 at S65; this post-translational modification is required for the proper development of the floral meristem.	Histone superfamily protein;(source:Araport11)
AT4G00060.2	protein_coding			Nucleotidyltransferase family protein;(source:Araport11)
AT1G26890.3	protein_coding			FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G26890.2	protein_coding			FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT2G30330.2	protein_coding		Putative homolog of mammalian BLOC-1 Subunit 1. Protein - protein interaction with BLOS2 and also with SNX1.Located in endomembrane system and hypothesized to be involved in endomembrane transport.	GCN5L1 family protein;(source:Araport11)
AT1G26890.5	protein_coding			FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G26890.4	protein_coding			FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT2G15860.3	protein_coding			BAT2 domain protein;(source:Araport11)
AT1G05473.1	long_noncoding_rna			None;(source:Araport11)
AT1G08633.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G63770;(source:Araport11)
AT2G15860.4	protein_coding			BAT2 domain protein;(source:Araport11)
AT3G54480.7	protein_coding		Encodes an SKP1 interacting partner (SKIP5).	SKP1/ASK-interacting protein 5;(source:Araport11)
AT1G09235.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G53930.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G53930.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G04715.1	long_noncoding_rna			None;(source:Araport11)
AT3G53930.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G13970.4	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT3G13970.2	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT3G13970.3	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT5G54730.2	protein_coding			yeast autophagy 18 F-like protein;(source:Araport11)
AT3G48900.3	protein_coding		Encodes one of two GEN1 homologs in Arabidopsis.  It is a member of the class IV Rad2/XPG family of nucleases that processes Holliday junctions in a manner analogous to the HJ resolvases of phages, archaea, and bacteria.	single-stranded DNA endonuclease family protein;(source:Araport11)
AT5G03300.3	protein_coding		Encodes adenosine kinase 2 (ADK2), a typical, constitutively expressed housekeeping enzyme. Shows a high sequence identity with ADK1. Involved in salvage synthesis of adenylates and methyl recycling. Enzyme activity is substantially inhibited in roots, siliques and dry seeds by an unknown compound. May contribute to cytokinin interconversion.The mRNA is cell-to-cell mobile.	adenosine kinase 2;(source:Araport11)
AT4G27630.5	protein_coding		Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG2 binds to GPA1, the alpha subunit of the heterotrimeric G protein.  GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG2 and may act to down-regulate GTG2 binding to ABA. GTG2 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG2 transcript levels do not appear to change in response to ABA or abiotic stresses.	GPCR-type G protein 2;(source:Araport11)
AT1G05750.2	protein_coding		Encodes a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G27630.7	protein_coding		Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG2 binds to GPA1, the alpha subunit of the heterotrimeric G protein.  GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG2 and may act to down-regulate GTG2 binding to ABA. GTG2 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG2 transcript levels do not appear to change in response to ABA or abiotic stresses.	GPCR-type G protein 2;(source:Araport11)
AT2G25215.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G33520.4	protein_coding		Encodes a putative metal-transporting P-type ATPase PAA1.  An alternative-splicing event of the PAA1 pre-mRNA produces a copper chaperon named PCH1.The mRNA is cell-to-cell mobile.	P-type ATP-ase 1;(source:Araport11)
AT2G06115.1	long_noncoding_rna			None;(source:Araport11)
AT1G70720.2	protein_coding			Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT2G24680.5	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT3G30165.1	protein_coding			zinc ion-binding protein;(source:Araport11)
AT2G04935.1	miRNA_primary_transcript			microRNA ath-MIR8180 precursor;(source:Araport11)
AT3G55740.3	protein_coding		Encodes a proline transporter with affinity for gly betaine, proline, and GABA.  Protein is expressed most highly in the roots.	proline transporter 2;(source:Araport11)
AT1G23510.3	protein_coding			OBP32pep protein;(source:Araport11)
AT3G08620.2	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT2G14680.4	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT5G65070.4	protein_coding		Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G65070.5	protein_coding		Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G65070.6	protein_coding		Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G03330.4	protein_coding			Cysteine proteinases superfamily protein;(source:Araport11)
AT3G51950.4	protein_coding		Contains single CCCH domain.	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT1G20740.2	protein_coding			transport/golgi organization-like protein (DUF833);(source:Araport11)
AT4G05815.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G10750;(source:Araport11)
AT2G03530.4	protein_coding		Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.	ureide permease 2;(source:Araport11)
AT1G31050.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G58025.6	protein_coding			DNA-binding bromodomain-containing protein;(source:Araport11)
AT3G04565.1	long_noncoding_rna			None;(source:Araport11)
AT1G58025.4	protein_coding			DNA-binding bromodomain-containing protein;(source:Araport11)
AT1G58025.5	protein_coding			DNA-binding bromodomain-containing protein;(source:Araport11)
AT4G07180.1	long_noncoding_rna			None;(source:Araport11)
AT3G59450.2	protein_coding			Calcium-binding EF-hand family protein;(source:Araport11)
AT1G56423.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G04497.1	long_noncoding_rna			None;(source:Araport11)
AT3G12320.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G12320.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G03695.1	long_noncoding_rna			None;(source:Araport11)
AT5G15843.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G26150.2	protein_coding		Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	proline-rich extensin-like receptor kinase 10;(source:Araport11)
AT5G41000.3	protein_coding		Arabidopsis thaliana metal-nicotianamine transporter YSL4	YELLOW STRIPE like 4;(source:Araport11)
AT5G52580.3	protein_coding			RabGAP/TBC domain-containing protein;(source:Araport11)
AT3G12340.2	protein_coding			FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G12340.3	protein_coding			FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G61380.2	protein_coding			Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT3G61380.3	protein_coding			Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
AT1G06653.1	miRNA_primary_transcript			microRNA ath-MIR5666 precursor;(source:Araport11)
AT5G66290.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G66560.2	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT2G40520.5	protein_coding			Nucleotidyltransferase family protein;(source:Araport11)
AT2G40520.6	protein_coding			Nucleotidyltransferase family protein;(source:Araport11)
AT2G44255.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44260;(source:Araport11)
AT2G14680.6	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT2G17020.3	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT2G17020.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT5G64180.2	protein_coding			tropomyosin;(source:Araport11)
AT4G26330.2	protein_coding			Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT5G67260.2	protein_coding		Encode CYCD3;2, a CYCD3 D-type cyclin.  Important for determining cell number in developing lateral organs and mediating cytokinin effects in apical growth and development. With PPD and NINJA, it plays a crucial role in leaf morphogenesis.	CYCLIN D3;(source:Araport11)
AT3G04030.5	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT5G41000.2	protein_coding		Arabidopsis thaliana metal-nicotianamine transporter YSL4	YELLOW STRIPE like 4;(source:Araport11)
AT4G34310.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G46460.2	protein_coding			ubiquitin-conjugating enzyme 13;(source:Araport11)
AT3G46460.3	protein_coding			ubiquitin-conjugating enzyme 13;(source:Araport11)
AT4G35770.5	protein_coding		Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT4G35770.4	protein_coding		Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT1G30080.2	protein_coding			Glycosyl hydrolase superfamily protein;(source:Araport11)
AT5G19000.3	protein_coding		Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 1;(source:Araport11)
AT2G17000.2	protein_coding			Mechanosensitive ion channel family protein;(source:Araport11)
AT5G64190.2	protein_coding			neuronal PAS domain protein;(source:Araport11)
AT5G64530.2	protein_coding			xylem NAC domain 1;(source:Araport11)
AT3G51650.4	protein_coding			stress response NST1-like protein;(source:Araport11)
AT5G20850.2	protein_coding		Encodes a homolog of yeast RAD51.  Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation. Also involved in defense gene transcription during plant immune responses.	RAS associated with diabetes protein 51;(source:Araport11)
AT3G07205.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G45600;(source:Araport11)
AT3G51650.3	protein_coding			stress response NST1-like protein;(source:Araport11)
AT3G51650.2	protein_coding			stress response NST1-like protein;(source:Araport11)
AT5G12360.2	protein_coding		Encodes a protein that protects meiotic centromere cohesion.	hypothetical protein;(source:Araport11)
AT5G03845.1	long_noncoding_rna			None;(source:Araport11)
AT5G14750.3	protein_coding		Encodes a MyB-related protein containing R2 and R3 repeats, involved in  root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).	myb domain protein 66;(source:Araport11)
AT5G14750.2	protein_coding		Encodes a MyB-related protein containing R2 and R3 repeats, involved in  root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).	myb domain protein 66;(source:Araport11)
AT1G72545.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G14750.4	protein_coding		Encodes a MyB-related protein containing R2 and R3 repeats, involved in  root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).	myb domain protein 66;(source:Araport11)
AT5G23150.3	protein_coding		Putative transcription factor. Member of the floral homeotic AGAMOUS pathway.Mutations in HUA enhance the phenotype of mild ag-4 allele. Single hua mutants are early flowering and have  reduced levels of FLC mRNA. Other MADS box flowering time genes such as FLM and MAF2 also appear to be regulated by HUA2. HUA2 normally activates FLC expression and enhances  AG function. HUA and HUA-LIKE (HULK) genes act redundantly to regulate a subset of essential genes, with some (or all) family members also having specific functions.The mRNA is cell-to-cell mobile.	Tudor/PWWP/MBT domain-containing protein;(source:Araport11)
AT5G23150.2	protein_coding		Putative transcription factor. Member of the floral homeotic AGAMOUS pathway.Mutations in HUA enhance the phenotype of mild ag-4 allele. Single hua mutants are early flowering and have  reduced levels of FLC mRNA. Other MADS box flowering time genes such as FLM and MAF2 also appear to be regulated by HUA2. HUA2 normally activates FLC expression and enhances  AG function. HUA and HUA-LIKE (HULK) genes act redundantly to regulate a subset of essential genes, with some (or all) family members also having specific functions.The mRNA is cell-to-cell mobile.	Tudor/PWWP/MBT domain-containing protein;(source:Araport11)
AT1G73390.5	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT4G08285.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G30430;(source:Araport11)
AT1G48180.3	protein_coding			target of trans acting-siR480/255 protein;(source:Araport11)
AT5G54430.5	protein_coding		Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT5G54430.6	protein_coding		Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT2G24260.2	protein_coding		Encodes a basic helix-loop-helix (bHLH) protein that regulates root hair and sperm cell development.  One of the three Arabidopsis homologs of the Lotus japonicus ROOTHAIRLESS1 (LjRHL1) gene: At2g24260 (AtLRL1), At4g30980 (AtLRL2), and At5g58010 (AtLRL3).	LJRHL1-like 1;(source:Araport11)
AT5G54430.2	protein_coding		Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G04890.4	protein_coding			adenine phosphoribosyltransferase-like protein, putative (DUF2358);(source:Araport11)
AT4G16990.18	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT4G16990.19	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT3G52160.2	protein_coding		Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 15;(source:Araport11)
AT4G00680.2	protein_coding			actin depolymerizing factor 8;(source:Araport11)
AT4G16990.12	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G26810.2	protein_coding		Encodes a protein with &#946;1,3-galactosyltransferase activity involved in the biosynthesis of the Lewis a epitope of certain glycoproteins.	galactosyltransferase1;(source:Araport11)
AT4G16990.10	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G07280.4	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G03810.2	protein_coding			O-fucosyltransferase family protein;(source:Araport11)
AT4G16990.17	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G54110.3	protein_coding			Membrane fusion protein Use1;(source:Araport11)
AT3G00910.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G01950.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G12440.10	protein_coding			CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT4G09015.1	long_noncoding_rna			None;(source:Araport11)
AT5G09580.2	protein_coding			heat shock protein;(source:Araport11)
AT3G27470.3	protein_coding			lysine ketoglutarate reductase trans-splicing protein (DUF707);(source:Araport11)
AT1G27920.2	protein_coding			microtubule-associated protein 65-8;(source:Araport11)
AT1G08687.1	novel_transcribed_region			novel transcribed region; detected in root, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, shoot apical meristem;(source:Araport11)
AT1G04895.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G00525.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G06547.1	small_nucleolar_rna			None;(source:Araport11)
AT2G09195.1	long_noncoding_rna			None;(source:Araport11)
AT4G27745.3	protein_coding			Yippee family putative zinc-binding protein;(source:Araport11)
AT2G08385.1	long_noncoding_rna			None;(source:Araport11)
AT3G16320.2	protein_coding		Subunit in the anaphase-promoting complex. Role in gametogenesis, control of mitotic  progression and cell differentiation during the entire life cycle.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G16320.3	protein_coding		Subunit in the anaphase-promoting complex. Role in gametogenesis, control of mitotic  progression and cell differentiation during the entire life cycle.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G04225.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G02620;(source:Araport11)
AT2G12646.2	protein_coding			PLATZ transcription factor family protein;(source:Araport11)
AT5G63640.2	protein_coding			ENTH/VHS/GAT family protein;(source:Araport11)
AT4G15230.3	protein_coding			pleiotropic drug resistance 2;(source:Araport11)
AT3G03205.1	long_noncoding_rna			None;(source:Araport11)
AT4G03000.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G03000.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G13960.2	protein_coding		Encodes a histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation. SUVH4/KYP is a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. In kyp mutants, there is a loss of CpNpG methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the latter two. There is also evidence that KYP/SUVH4 might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein;(source:Araport11)
AT4G03000.6	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G37680.5	protein_coding		heptahelical transmembrane protein HHP4	heptahelical protein 4;(source:Araport11)
AT4G16920.8	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G74385.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G27340.4	protein_coding			Myb domain protein;(source:Araport11)
AT1G70490.5	protein_coding		A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	Ras-related small GTP-binding family protein;(source:Araport11)
AT5G05565.1	long_noncoding_rna			None;(source:Araport11)
AT3G46610.2	protein_coding		Chloroplast-localized PPR protein required for the translation of the psbJ and psbN open reading frames. TPJ(2019) shows that LPE1 is not required for psbA translation, in contrast to previous results (PNAS 2018).	Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G80820.2	protein_coding		Encodes an cinnamoyl CoA reductase isoform.  Involved in lignin biosynthesis.	cinnamoyl coa reductase;(source:Araport11)
AT2G08960.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G38340;(source:Araport11)
AT5G64520.10	protein_coding		Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.	homolog of X-ray repair cross complementing 2 (XRCC2);(source:Araport11)
AT1G14980.2	protein_coding		Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.	chaperonin 10;(source:Araport11)
AT1G26130.3	protein_coding			ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT3G55170.4	protein_coding			Ribosomal L29 family protein;(source:Araport11)
AT3G55170.5	protein_coding			Ribosomal L29 family protein;(source:Araport11)
AT4G08515.1	long_noncoding_rna			None;(source:Araport11)
AT1G62560.2	protein_coding		belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesThe mRNA is cell-to-cell mobile.	flavin-monooxygenase glucosinolate S-oxygenase 3;(source:Araport11)
AT1G80980.2	protein_coding			stress response NST1-like protein;(source:Araport11)
AT4G04915.1	novel_transcribed_region			novel transcribed region; detected in receptacle, light-grown seedling, flower, aerial;(source:Araport11)
AT4G27565.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G20590.2	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 5;(source:Araport11)
AT5G00785.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G01720;(source:Araport11)
AT4G36640.3	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT2G43680.4	protein_coding		Member of IQ67 (CaM binding) domain containing family.	IQ-domain 14;(source:Araport11)
AT2G43680.5	protein_coding		Member of IQ67 (CaM binding) domain containing family.	IQ-domain 14;(source:Araport11)
AT2G31110.3	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	trichome birefringence-like protein (DUF828);(source:Araport11)
AT5G23210.5	protein_coding			serine carboxypeptidase-like 34;(source:Araport11)
AT1G14290.2	protein_coding		Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.	sphingoid base hydroxylase 2;(source:Araport11)
AT1G49830.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G68723.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G62580.3	protein_coding		Encodes a flavin monooxygenase that binds NO, has a higher affinity for NO than for O(2) and can generate cGMP from GTP in vitro in an NO-dependent manner.	flavin containing monooxygenase FMO GS-OX-like protein;(source:Araport11)
AT1G62580.2	protein_coding		Encodes a flavin monooxygenase that binds NO, has a higher affinity for NO than for O(2) and can generate cGMP from GTP in vitro in an NO-dependent manner.	flavin containing monooxygenase FMO GS-OX-like protein;(source:Araport11)
AT3G52750.2	protein_coding		Nuclear gene that encodes a plastidial division protein (FtsZ2-2).   FtsZ2-2 is involved in chloroplast morphology and internal organisation in addition to participating in chloroplast partition	Tubulin/FtsZ family protein;(source:Araport11)
AT4G15030.3	protein_coding			folate-sensitive fragile site protein;(source:Araport11)
AT5G28530.2	protein_coding			FAR1-related sequence 10;(source:Araport11)
AT1G23900.3	protein_coding		Encodes large subunit of the heterotetrameric adaptor protein complex AP-1. AP-1 is required for clathrin coated vesicles budding from the trans-Golgi network or plasma membrane	gamma-adaptin 1;(source:Araport11)
AT2G13550.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G28530.4	protein_coding			FAR1-related sequence 10;(source:Araport11)
AT5G28530.5	protein_coding			FAR1-related sequence 10;(source:Araport11)
AT4G34310.10	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G75891.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G75890;(source:Araport11)
AT2G22807.2	protein_coding		Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT1G05063.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, shoot apical meristem;(source:Araport11)
AT4G15765.3	protein_coding			FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT3G30214.2	pseudogene			pseudogene of transmembrane protein;(source:Araport11)
AT3G01675.1	long_noncoding_rna			None;(source:Araport11)
AT1G08697.1	long_noncoding_rna			None;(source:Araport11)
AT5G01010.5	protein_coding			retinal-binding protein;(source:Araport11)
AT2G14820.2	protein_coding		A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590).  Involved in auxin-mediated organogenesis.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G01105.1	long_noncoding_rna			None;(source:Araport11)
AT3G03995.1	long_noncoding_rna			None;(source:Araport11)
AT1G73065.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G08175.1	long_noncoding_rna			None;(source:Araport11)
AT1G50690.2	protein_coding			Cystatin/monellin superfamily protein;(source:Araport11)
AT1G76870.2	protein_coding			transcription factor;(source:Araport11)
AT1G76870.3	protein_coding			transcription factor;(source:Araport11)
AT2G32250.7	protein_coding			FAR1-related sequence 2;(source:Araport11)
AT2G32250.6	protein_coding			FAR1-related sequence 2;(source:Araport11)
AT2G32250.5	protein_coding			FAR1-related sequence 2;(source:Araport11)
AT4G23015.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G01650.4	protein_coding			Tautomerase/MIF superfamily protein;(source:Araport11)
AT1G32740.3	protein_coding			SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT4G04185.1	small_nuclear_rna			U5;(source:Araport11)
AT5G01650.3	protein_coding			Tautomerase/MIF superfamily protein;(source:Araport11)
AT2G32250.8	protein_coding			FAR1-related sequence 2;(source:Araport11)
AT2G02760.4	protein_coding		ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene.	ubiquiting-conjugating enzyme 2;(source:Araport11)
AT2G09845.1	long_noncoding_rna			None;(source:Araport11)
AT3G14590.5	protein_coding		Ca2+-dependent lipid-binding protein	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G18000.uORF1	uORF			Derives_from AT3G18000;(source:Araport11)
AT1G06353.1	long_noncoding_rna			None;(source:Araport11)
AT3G25690.5	protein_coding		actin binding protein required for normal chloroplast positioningThe mRNA is cell-to-cell mobile.	Hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G07960.1	long_noncoding_rna			None;(source:Araport11)
AT1G55810.7	protein_coding		One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 3;(source:Araport11)
AT4G27320.2	protein_coding		Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT4G13577.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G03050.2	protein_coding		A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT2G25300.2	protein_coding		Encodes a hydroxyproline O-galactosyltransferase.	Galactosyltransferase family protein;(source:Araport11)
AT1G80525.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G59550.2	protein_coding		Encodes an ABA- and drought-induced RING-DUF1117 gene whose mutation results in hyposensitive phenotypes toward ABA in terms of germination rate and stomatal closure and markedly reduced tolerance to drought stress relative to wild-type plants.	zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT3G07665.1	long_noncoding_rna			None;(source:Araport11)
AT3G24110.2	protein_coding			Calcium-binding EF-hand family protein;(source:Araport11)
AT4G16380.3	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G13810.3	protein_coding			receptor like protein 47;(source:Araport11)
AT5G17700.3	protein_coding			MATE efflux family protein;(source:Araport11)
AT4G16380.4	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G04900.2	protein_coding		encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings.	ROP-interactive CRIB motif-containing protein 10;(source:Araport11)
AT1G09790.2	protein_coding			COBRA-like protein 6 precursor;(source:Araport11)
AT1G11410.4	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G71480.2	protein_coding			Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT1G71480.3	protein_coding			Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT5G11790.2	protein_coding			N-MYC downregulated-like 2;(source:Araport11)
AT1G11410.3	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G11410.2	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT3G09475.1	long_noncoding_rna			None;(source:Araport11)
AT2G37805.1	protein_coding			cysteine/histidine-rich C1 domain protein;(source:Araport11)
AT5G06565.1	small_nucleolar_rna			None;(source:Araport11)
AT1G17500.2	protein_coding			ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT3G23610.4	protein_coding		Encodes a dual specificity protein phosphatase whose activity is modulated by CaM binding.	dual specificity protein phosphatase 1;(source:Araport11)
AT3G23610.5	protein_coding		Encodes a dual specificity protein phosphatase whose activity is modulated by CaM binding.	dual specificity protein phosphatase 1;(source:Araport11)
AT3G23610.6	protein_coding		Encodes a dual specificity protein phosphatase whose activity is modulated by CaM binding.	dual specificity protein phosphatase 1;(source:Araport11)
AT2G31955.4	protein_coding		COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria.	cofactor of nitrate reductase and xanthine dehydrogenase 2;(source:Araport11)
AT2G31955.5	protein_coding		COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria.	cofactor of nitrate reductase and xanthine dehydrogenase 2;(source:Araport11)
AT2G31955.6	protein_coding		COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria.	cofactor of nitrate reductase and xanthine dehydrogenase 2;(source:Araport11)
AT5G02965.1	long_noncoding_rna			None;(source:Araport11)
AT5G14340.2	protein_coding		Member of the R2R3 factor gene family.	myb domain protein 40;(source:Araport11)
AT3G28922.1	protein_coding			pectinesterase;(source:Araport11)
AT1G11170.6	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT2G43920.5	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G43920.4	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G43920.6	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G28520.5	protein_coding		Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	cruciferin 3;(source:Araport11)
AT3G12010.uORF1-2	uORF			Derives_from AT3G12010;(source:Araport11)
AT3G12010.uORF1-3	uORF			Derives_from AT3G12010;(source:Araport11)
AT3G02160.2	protein_coding			Bromodomain transcription factor;(source:Araport11)
AT3G12010.uORF1-1	uORF			Derives_from AT3G12010;(source:Araport11)
AT1G77310.2	protein_coding			wound-responsive family protein;(source:Araport11)
AT1G06817.1	long_noncoding_rna			None;(source:Araport11)
AT4G05740.1	long_noncoding_rna			None;(source:Araport11)
AT3G20010.7	protein_coding		Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG2 and interacts physically with SUVR2, another component of the RdDM pathway.	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT1G73177.3	protein_coding		The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.	bonsai;(source:Araport11)
AT1G73177.2	protein_coding		The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.	bonsai;(source:Araport11)
AT4G23180.3	protein_coding		Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)The mRNA is cell-to-cell mobile.	cysteine-rich RLK (RECEPTOR-like protein kinase) 10;(source:Araport11)
AT4G23180.2	protein_coding		Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)The mRNA is cell-to-cell mobile.	cysteine-rich RLK (RECEPTOR-like protein kinase) 10;(source:Araport11)
AT3G06135.1	long_noncoding_rna			None;(source:Araport11)
AT2G06415.1	long_noncoding_rna			None;(source:Araport11)
AT1G07673.1	long_noncoding_rna			None;(source:Araport11)
AT3G16470.4	protein_coding		Encodes a JA-responsive gene that coordinates with GRP7 in shaping plant development through the regulation of RNA processing in Arabidopsis. AtJAC1 interacts with RNA binding protein GRP7 specifically in the cytoplasm to regulate its nucleocytoplasmic distribution.	Mannose-binding lectin superfamily protein;(source:Araport11)
AT5G00965.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G04410;(source:Araport11)
AT3G01560.2	protein_coding			proline-rich receptor-like kinase, putative (DUF1421);(source:Araport11)
AT5G64360.7	protein_coding		EIP9 interacts with EMF1 to regulate flowering. It functions partially redundantly with SDJ2 and SDJ3 and interacts with SUVH1 and SUVH3 to form a SUVH-SDJ complex. The complex binds promoters with DNA methylation and mediates transcriptional activation of promoter methylated genes.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G08575.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33390;(source:Araport11)
AT5G07375.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, dark-grown seedling;(source:Araport11)
AT5G05205.1	long_noncoding_rna			None;(source:Araport11)
AT5G64360.6	protein_coding		EIP9 interacts with EMF1 to regulate flowering. It functions partially redundantly with SDJ2 and SDJ3 and interacts with SUVH1 and SUVH3 to form a SUVH-SDJ complex. The complex binds promoters with DNA methylation and mediates transcriptional activation of promoter methylated genes.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G20380.9	protein_coding		LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge	LSD1 zinc finger family protein;(source:Araport11)
AT1G05823.1	long_noncoding_rna			None;(source:Araport11)
AT5G64360.5	protein_coding		EIP9 interacts with EMF1 to regulate flowering. It functions partially redundantly with SDJ2 and SDJ3 and interacts with SUVH1 and SUVH3 to form a SUVH-SDJ complex. The complex binds promoters with DNA methylation and mediates transcriptional activation of promoter methylated genes.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G18025.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G05463.1	antisense_rna			Natural antisense transcript overlaps with AT1G19120;(source:Araport11)
AT4G21820.2	protein_coding			binding / calmodulin binding protein;(source:Araport11)
AT4G21820.3	protein_coding			binding / calmodulin binding protein;(source:Araport11)
AT2G04020.2	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G64813.2	protein_coding		The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis.The mRNA is cell-to-cell mobile.	Ras-related small GTP-binding family protein;(source:Araport11)
AT1G55830.3	protein_coding			coiled-coil protein;(source:Araport11)
AT4G03510.4	protein_coding		RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity.	RING membrane-anchor 1;(source:Araport11)
AT1G04507.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G06790;(source:Araport11)
AT4G13800.9	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT4G03510.3	protein_coding		RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity.	RING membrane-anchor 1;(source:Araport11)
AT4G02835.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09495.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G02255.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G00760.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G09760.2	protein_coding			Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT1G67792.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G67790;(source:Araport11)
AT1G10520.2	protein_coding		Encodes a homolog of the mammalian DNA polymerase lambda that is involved in the repair of UV-B induced DNA damage.	DNA polymerase lambda (POLL);(source:Araport11)
AT5G15910.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G00900.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G49045.1	protein_coding			F-box/FBD/LRR protein;(source:Araport11)
AT2G09100.1	long_noncoding_rna			None;(source:Araport11)
AT1G21840.2	protein_coding		Encodes a urease accessory protein which is essential for the activation of plant urease.	urease accessory protein F;(source:Araport11)
AT2G23370.2	protein_coding			cyclin delta-3;(source:Araport11)
AT5G21930.4	protein_coding		P-Type ATPase, mediates copper transport to chloroplast thylakoid lumen. Required for accumulation of copper-containing plastocyanin in the thylakoid lumen and for effective photosynthetic electron transport	P-type ATPase of Arabidopsis 2;(source:Araport11)
AT4G04675.1	long_noncoding_rna			None;(source:Araport11)
AT5G22610.2	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT3G51150.3	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT4G20535.1	protein_coding			receptor-like kinase;(source:Araport11)
AT2G00920.1	novel_transcribed_region		Member of conserved family of peptides involved in Fe uptake and homeostasis.	novel transcribed region;(source:Araport11)
AT3G46220.4	protein_coding			E3 UFM1-protein ligase-like protein;(source:Araport11)
AT5G24260.4	protein_coding			prolyl oligopeptidase family protein;(source:Araport11)
AT4G30820.6	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT5G06815.1	small_nuclear_rna			U6;(source:Araport11)
AT1G18700.6	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT4G24100.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G67792.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G67790;(source:Araport11)
AT4G24100.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G24100.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G10320.6	protein_coding			ATP synthase subunit B;(source:Araport11)
AT1G06833.1	novel_transcribed_region			novel transcribed region; detected in carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT2G00590.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G01205.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G06190;(source:Araport11)
AT1G16710.9	protein_coding		Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates.  No  single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides,  suggesting that HAC12 can acetylate any  of several lysines present in the peptides.	histone acetyltransferase of the CBP family 12;(source:Araport11)
AT1G16710.8	protein_coding		Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates.  No  single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides,  suggesting that HAC12 can acetylate any  of several lysines present in the peptides.	histone acetyltransferase of the CBP family 12;(source:Araport11)
AT3G16525.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G30820.9	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT1G16710.3	protein_coding		Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates.  No  single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides,  suggesting that HAC12 can acetylate any  of several lysines present in the peptides.	histone acetyltransferase of the CBP family 12;(source:Araport11)
AT3G54390.2	protein_coding			sequence-specific DNA binding transcription factor;(source:Araport11)
AT1G68190.3	protein_coding			B-box zinc finger family protein;(source:Araport11)
AT1G16710.7	protein_coding		Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates.  No  single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides,  suggesting that HAC12 can acetylate any  of several lysines present in the peptides.	histone acetyltransferase of the CBP family 12;(source:Araport11)
AT4G24350.3	protein_coding			Phosphorylase superfamily protein;(source:Araport11)
AT1G16710.5	protein_coding		Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates.  No  single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides,  suggesting that HAC12 can acetylate any  of several lysines present in the peptides.	histone acetyltransferase of the CBP family 12;(source:Araport11)
AT1G16710.4	protein_coding		Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates.  No  single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides,  suggesting that HAC12 can acetylate any  of several lysines present in the peptides.	histone acetyltransferase of the CBP family 12;(source:Araport11)
AT2G05615.1	miRNA_primary_transcript			microRNA ath-MIR5020c precursor;(source:Araport11)
AT4G00960.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G00960.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G00960.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G34850.2	protein_coding			Chalcone and stilbene synthase family protein;(source:Araport11)
AT5G14220.4	protein_coding		Encodes PPO2, a putative protoporphyrinogen oxidase based on sequence homology.  Also known as MEE61 (maternal effect embryo arrest 61).  mee61 mutant shows arrested endosperm development.	Flavin containing amine oxidoreductase family;(source:Araport11)
AT1G04573.1	long_noncoding_rna			None;(source:Araport11)
AT5G19690.2	protein_coding		encodes an oligosaccharyl transferase involved response to high salt. Mutants are hypersensitive to high salt conditionsThe mRNA is cell-to-cell mobile.	staurosporin and temperature sensitive 3-like A;(source:Araport11)
AT2G36900.3	protein_coding		member of Membrin Gene Family	membrin 11;(source:Araport11)
AT3G04285.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G22630;(source:Araport11)
AT3G61340.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G29960.2	protein_coding			Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT1G09073.1	other_rna			None;(source:Araport11)
AT3G03025.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G15190;(source:Araport11)
AT3G07010.2	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT3G08660.2	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G63615.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G04597.1	long_noncoding_rna			None;(source:Araport11)
AT1G07620.4	protein_coding			GTP-binding protein Obg/CgtA;(source:Araport11)
AT5G53060.3	protein_coding		Encodes a KH domain-containing putative RNA-binding protein RCF3.  Functions as a upstream regulator for heat stress-responsive gene expression and thermotolerance and mediation of jasmonate signalling.Also shown to interact with HYL1 and is a component of the nuclear dicing body and to function in primary miRNA processing.	RNA-binding KH domain-containing protein;(source:Araport11)
AT1G07620.3	protein_coding			GTP-binding protein Obg/CgtA;(source:Araport11)
AT1G07620.2	protein_coding			GTP-binding protein Obg/CgtA;(source:Araport11)
AT1G75550.2	protein_coding			glycine-rich protein;(source:Araport11)
AT3G56830.5	protein_coding		Similar in sequence to NPQ6 and NPQ7, but loss of function mutant does not exhibit a nonphotochemical quenching phenotype.	YCF20-like protein (DUF565);(source:Araport11)
AT3G56830.6	protein_coding		Similar in sequence to NPQ6 and NPQ7, but loss of function mutant does not exhibit a nonphotochemical quenching phenotype.	YCF20-like protein (DUF565);(source:Araport11)
AT3G56830.7	protein_coding		Similar in sequence to NPQ6 and NPQ7, but loss of function mutant does not exhibit a nonphotochemical quenching phenotype.	YCF20-like protein (DUF565);(source:Araport11)
AT5G61640.2	protein_coding		ubiquitous enzyme that repairs oxidatively damaged proteins	peptidemethionine sulfoxide reductase 1;(source:Araport11)
AT2G42300.4	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G56830.8	protein_coding		Similar in sequence to NPQ6 and NPQ7, but loss of function mutant does not exhibit a nonphotochemical quenching phenotype.	YCF20-like protein (DUF565);(source:Araport11)
AT2G05350.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G16570.2	protein_coding		Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis.  Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  RALF23 is significantly downregulated by brassinolide treatment of seedlings.   Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere.	rapid alkalinization factor 23;(source:Araport11)
AT2G39950.5	protein_coding			flocculation protein;(source:Araport11)
AT2G39950.4	protein_coding			flocculation protein;(source:Araport11)
AT2G39950.7	protein_coding			flocculation protein;(source:Araport11)
AT2G39950.6	protein_coding			flocculation protein;(source:Araport11)
AT4G17300.2	protein_coding		Asparaginyl-tRNA synthetase protein involved in amino acid activation/protein synthesis.	Class II aminoacyl-tRNA and biotin synthetases superfamily protein;(source:Araport11)
AT2G39950.3	protein_coding			flocculation protein;(source:Araport11)
AT4G16620.2	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G16620.3	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G59124.2	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT2G39950.9	protein_coding			flocculation protein;(source:Araport11)
AT2G39950.8	protein_coding			flocculation protein;(source:Araport11)
AT4G16620.4	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G29290.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G58370.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G13800.8	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT3G61710.4	protein_coding		Encodes autophagy protein 6 (ATG6), required for pollen germination and plant development.	AUTOPHAGY 6;(source:Araport11)
AT3G02785.1	long_noncoding_rna			None;(source:Araport11)
AT3G28970.2	protein_coding		Identified in a screen for mutants resistant to an anti-auxin. Encodes a protein with unknown function that shares homology with DCN protein family.	defective in cullin neddylation protein (DUF298);(source:Araport11)
AT5G01570.3	protein_coding			plectin-like protein;(source:Araport11)
AT4G10400.3	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G13820.2	protein_coding		Encodes a protein that specifically binds plant telomeric DNA  repeats. It has a single Myb telomeric DNA-binding (SANT) domain in C-terminus that prefers the sequence TTTAGGG. Single Myb Histone (SMH) gene family member.	telomeric DNA binding protein 1;(source:Araport11)
AT1G70505.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G59800.2	protein_coding			stress response protein;(source:Araport11)
AT1G58190.4	protein_coding			receptor like protein 9;(source:Araport11)
AT5G53010.2	protein_coding			calcium-transporting ATPase;(source:Araport11)
AT4G09935.1	long_noncoding_rna			None;(source:Araport11)
AT3G48475.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G06985.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G21180;(source:Araport11)
AT1G35250.2	protein_coding			Thioesterase superfamily protein;(source:Araport11)
AT3G16940.2	protein_coding			calmodulin-binding transcription activator;(source:Araport11)
AT3G55870.3	protein_coding			ADC synthase superfamily protein;(source:Araport11)
AT3G55870.2	protein_coding			ADC synthase superfamily protein;(source:Araport11)
AT5G49210.3	protein_coding			stress response NST1-like protein;(source:Araport11)
AT5G37770.2	protein_coding		Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in  plants subjected to touch, darkness, heat,  cold, hydrogen peroxide, abscisic acid  (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not  detectable. The putative CML24 regulatory region confers reporter expression at sites  of predicted mechanical stress; in regions undergoing growth; in vascular tissues and  various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2).  Also regulates nitric oxide levels.	EF hand calcium-binding protein family;(source:Araport11)
AT1G04587.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G07480;(source:Araport11)
AT4G00240.3	protein_coding		member of C2-PLD subfamily	phospholipase D beta 2;(source:Araport11)
AT5G44780.2	protein_coding		Member of MORF family consisting of of nine full-length proteins encoded in the nuclear genome. MORF proteins are required for all RNA editing events in plastids and for many, possibly also all, sites in mitochondria. Potential link between the RNA binding PPR protein and the protein contributing the enzymatic activity in RNA editing.	high molecular weight subunit-like glutenin;(source:Araport11)
AT3G55850.3	protein_coding		Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids.	Amidohydrolase family;(source:Araport11)
AT4G10010.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G73210.3	protein_coding			hypothetical protein (DUF789);(source:Araport11)
AT3G55850.6	protein_coding		Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids.	Amidohydrolase family;(source:Araport11)
AT3G55850.5	protein_coding		Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids.	Amidohydrolase family;(source:Araport11)
AT3G55850.4	protein_coding		Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids.	Amidohydrolase family;(source:Araport11)
AT3G24495.2	protein_coding		encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2*MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts.	MUTS homolog 7;(source:Araport11)
AT4G19670.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G16050.2	protein_coding		Encodes GF14 upsilon chain, a 14-3-3 gene family member.	general regulatory factor 5;(source:Araport11)
AT5G05665.1	long_noncoding_rna			None;(source:Araport11)
AT2G03855.1	miRNA_primary_transcript			microRNA ath-MIR5642b precursor;(source:Araport11)
AT1G15350.6	protein_coding			DUF4050 family protein;(source:Araport11)
AT5G20360.6	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT1G15350.4	protein_coding			DUF4050 family protein;(source:Araport11)
AT5G19230.2	protein_coding			Glycoprotein membrane precursor GPI-anchored;(source:Araport11)
AT2G03210.3	protein_coding		member of Glycosyltransferase Family- 37	fucosyltransferase 2;(source:Araport11)
AT2G03210.2	protein_coding		member of Glycosyltransferase Family- 37	fucosyltransferase 2;(source:Araport11)
AT5G04220.3	protein_coding			Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G73280.2	protein_coding			serine carboxypeptidase-like 3;(source:Araport11)
AT5G06365.1	long_noncoding_rna			None;(source:Araport11)
AT4G35985.3	protein_coding			Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT5G06995.1	long_noncoding_rna			None;(source:Araport11)
AT1G06387.1	long_noncoding_rna			None;(source:Araport11)
AT1G02990.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G02990.5	protein_coding			hypothetical protein;(source:Araport11)
AT1G02990.6	protein_coding			hypothetical protein;(source:Araport11)
AT5G20300.5	protein_coding		Encodes Toc90, part of the TOC (translocon at the outer chloroplast membrane) machinery involved in the import of nucleus-encoded proteins into the chloroplast.	Avirulence induced gene (AIG1) family protein;(source:Araport11)
AT5G20300.4	protein_coding		Encodes Toc90, part of the TOC (translocon at the outer chloroplast membrane) machinery involved in the import of nucleus-encoded proteins into the chloroplast.	Avirulence induced gene (AIG1) family protein;(source:Araport11)
AT4G28150.3	protein_coding			hypothetical protein (DUF789);(source:Araport11)
AT1G06627.1	long_noncoding_rna			None;(source:Araport11)
AT5G04485.1	novel_transcribed_region			novel transcribed region; detected in receptacle, light-grown seedling, flower, aerial;(source:Araport11)
AT5G47455.11	protein_coding			hypothetical protein;(source:Araport11)
AT5G47455.10	protein_coding			hypothetical protein;(source:Araport11)
AT3G28460.2	protein_coding			methyltransferase;(source:Araport11)
AT3G28460.3	protein_coding			methyltransferase;(source:Araport11)
AT2G25660.4	protein_coding		Translocon at the inner-envelope membrane of chloroplasts which binds to the outer-membrane channel TOC75.	embryo defective 2410;(source:Araport11)
AT4G19670.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G25660.2	protein_coding		Translocon at the inner-envelope membrane of chloroplasts which binds to the outer-membrane channel TOC75.	embryo defective 2410;(source:Araport11)
AT2G25660.3	protein_coding		Translocon at the inner-envelope membrane of chloroplasts which binds to the outer-membrane channel TOC75.	embryo defective 2410;(source:Araport11)
AT5G66900.3	protein_coding		RPW8 -CNL gene is required for signal transduction of TNLs; functionally redundant to NRG1.2. Exhibits autoimmunity.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G66900.2	protein_coding		RPW8 -CNL gene is required for signal transduction of TNLs; functionally redundant to NRG1.2. Exhibits autoimmunity.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G09455.1	long_noncoding_rna			None;(source:Araport11)
AT4G21410.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 29;(source:Araport11)
AT2G07295.1	small_nuclear_rna			U2;(source:Araport11)
AT2G07415.1	long_noncoding_rna			None;(source:Araport11)
AT1G18620.3	protein_coding		Member of a small gene family in Arabidopsis. Quadruple mutants in this family display defects in cell elongation.	LONGIFOLIA protein;(source:Araport11)
AT1G18620.5	protein_coding		Member of a small gene family in Arabidopsis. Quadruple mutants in this family display defects in cell elongation.	LONGIFOLIA protein;(source:Araport11)
AT1G18620.4	protein_coding		Member of a small gene family in Arabidopsis. Quadruple mutants in this family display defects in cell elongation.	LONGIFOLIA protein;(source:Araport11)
AT2G08365.1	long_noncoding_rna			None;(source:Araport11)
AT5G08535.4	protein_coding			D111/G-patch domain-containing protein;(source:Araport11)
AT1G23440.3	protein_coding			Peptidase C15, pyroglutamyl peptidase I-like protein;(source:Araport11)
AT5G18540.4	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT5G08535.3	protein_coding			D111/G-patch domain-containing protein;(source:Araport11)
AT2G36980.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G36980.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G06295.1	long_noncoding_rna			None;(source:Araport11)
AT4G09620.2	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G08053.1	miRNA_primary_transcript			microRNA ath-MIR5635b precursor;(source:Araport11)
AT3G21250.3	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 6;(source:Araport11)
AT4G02120.2	protein_coding		Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT3G20410.2	protein_coding		calmodulin-domain protein kinase CDPK isoform 9 (CPK9)	calmodulin-domain protein kinase 9;(source:Araport11)
AT3G21250.6	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 6;(source:Araport11)
AT3G25790.2	protein_coding		Encodes a nuclear localized member of the GARP family of transcription factors. Along with AtNIGT1/HRS1 it is involved in nitrate and phosphate signaling in the root.	myb-like transcription factor family protein;(source:Araport11)
AT3G21250.4	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 6;(source:Araport11)
AT3G21250.5	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 6;(source:Araport11)
AT3G01365.1	long_noncoding_rna			None;(source:Araport11)
AT4G23780.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G12040.2	protein_coding		Encodes a 3-methyladenine-DNA glycosylase. Arabdiopsis cDNA complements the methyl methanesulfonate-sensitive phenotype of an Escherichia coli double mutant deficient in 3-methyladenine glycosylases (DNA-3-methyladenine glycosidases I and II, EC 3.2.2.20 and 3.2.2.21, respectively, encoded by tag and alkA).	DNA-3-methyladenine glycosylase (MAG);(source:Araport11)
AT1G68877.1	protein_coding			chaperonin 60 subunit beta;(source:Araport11)
AT5G03560.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G02235.1	long_noncoding_rna			None;(source:Araport11)
AT5G03560.4	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G53780.4	protein_coding			26S proteasome regulatory complex ATPase;(source:Araport11)
AT3G11680.2	protein_coding			aluminum activated malate transporter family protein;(source:Araport11)
AT1G75850.2	protein_coding			VPS35 homolog B;(source:Araport11)
AT1G13090.2	protein_coding		putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 28;(source:Araport11)
AT2G09160.1	long_noncoding_rna			None;(source:Araport11)
AT1G06637.1	long_noncoding_rna			None;(source:Araport11)
AT4G02925.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G77000.4	protein_coding		AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1.  Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain.  Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis.  AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. AtSKP2b may also be involved in the degradation of KRP1/ICK1, a CDK inhibitor.	RNI-like superfamily protein;(source:Araport11)
AT2G00930.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09143.1	small_nuclear_rna			U5;(source:Araport11)
AT3G02405.1	long_noncoding_rna			None;(source:Araport11)
AT2G13905.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G56240.4	protein_coding			hapless protein;(source:Araport11)
AT5G56240.3	protein_coding			hapless protein;(source:Araport11)
AT5G09395.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G65550;(source:Araport11)
AT5G24240.2	protein_coding		Encodes PI4Kc3, localizes to the nucleus and has autophosphorylation activity, but no lipid kinase activity. Overexpression mutants display late-flowering phenotype.	phosphatidylinositol 4-kinase gamma-like protein;(source:Araport11)
AT3G04345.1	long_noncoding_rna			None;(source:Araport11)
AT4G21940.3	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 15;(source:Araport11)
AT1G09683.1	long_noncoding_rna			None;(source:Araport11)
AT1G36085.1	protein_coding			mutator-like transposase;(source:Araport11)
AT5G26110.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G49430.5	protein_coding		Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SER/ARG-rich protein 34A;(source:Araport11)
AT3G61420.2	protein_coding			BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins);(source:Araport11)
AT3G17590.3	protein_coding		Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes.	transcription regulatory protein SNF5, putative (BSH);(source:Araport11)
AT1G50840.2	protein_coding		DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation.	polymerase gamma 2;(source:Araport11)
AT2G05675.1	long_noncoding_rna			None;(source:Araport11)
AT3G51850.3	protein_coding		member of Calcium Dependent Protein KinaseThe mRNA is cell-to-cell mobile.	calcium-dependent protein kinase 13;(source:Araport11)
AT3G51850.2	protein_coding		member of Calcium Dependent Protein KinaseThe mRNA is cell-to-cell mobile.	calcium-dependent protein kinase 13;(source:Araport11)
AT3G01285.1	long_noncoding_rna			None;(source:Araport11)
AT2G00410.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00410.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G40340.3	protein_coding		Encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G40340.4	protein_coding		Encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G40340.5	protein_coding		Encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G08935.1	long_noncoding_rna			None;(source:Araport11)
AT2G21720.2	protein_coding			ArgH (DUF639);(source:Araport11)
AT1G04490.7	protein_coding			hypothetical protein (DUF3527);(source:Araport11)
AT1G04490.6	protein_coding			hypothetical protein (DUF3527);(source:Araport11)
AT1G04490.5	protein_coding			hypothetical protein (DUF3527);(source:Araport11)
AT1G04490.4	protein_coding			hypothetical protein (DUF3527);(source:Araport11)
AT1G04490.3	protein_coding			hypothetical protein (DUF3527);(source:Araport11)
AT1G73290.2	protein_coding			serine carboxypeptidase-like 5;(source:Araport11)
AT1G08833.1	long_noncoding_rna			None;(source:Araport11)
AT3G06845.1	long_noncoding_rna			None;(source:Araport11)
AT3G52526.1	protein_coding			phosphoglucan phosphatase;(source:Araport11)
AT3G52526.2	protein_coding			phosphoglucan phosphatase;(source:Araport11)
AT3G52526.3	protein_coding			phosphoglucan phosphatase;(source:Araport11)
AT5G43650.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G04490.9	protein_coding			hypothetical protein (DUF3527);(source:Araport11)
AT1G04490.8	protein_coding			hypothetical protein (DUF3527);(source:Araport11)
AT3G20180.4	protein_coding			Copper transport protein family;(source:Araport11)
AT1G09740.2	protein_coding			Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G02925.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G14360;(source:Araport11)
AT3G20180.3	protein_coding			Copper transport protein family;(source:Araport11)
AT3G20180.2	protein_coding			Copper transport protein family;(source:Araport11)
AT2G08730.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G35420;(source:Araport11)
AT3G27475.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G07050.2	protein_coding		Involved in the biosynthesis of brassinosteroids. Catalyzes the reaction from epoxysqualene to cycloartenol.	cycloartenol synthase 1;(source:Araport11)
AT5G35930.2	protein_coding			AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G09397.1	long_noncoding_rna			None;(source:Araport11)
AT1G03445.2	protein_coding		encodes a serine?threonine protein phosphatase with an N-terminal Kelch-repeat domain, which is nuclear localized and expressed preferentially in elongating cells. Genetic evidence suggest that this gene plays a redundant role (along with other members of the same gene family) in modulating growth in response to brassinosteroid.	Serine/threonine protein phosphatase family protein;(source:Araport11)
AT2G02170.6	protein_coding			Remorin family protein;(source:Araport11)
AT5G06285.1	long_noncoding_rna			None;(source:Araport11)
AT2G02680.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G07253.1	long_noncoding_rna			None;(source:Araport11)
AT2G04080.2	protein_coding			MATE efflux family protein;(source:Araport11)
AT1G48360.5	protein_coding		Encodes a FAN1 homolog that is involved in interstrand crosslink repair. FAN1 appears to act in in a different pathway from MUS81 but in similar pathway with RECQ4A, RAD5A and MFH1.	zinc ion binding/nucleic acid binding/hydrolase;(source:Araport11)
AT3G60955.3	pseudogene		a cytochrome P450 pseudogene. overlaps with a real gene on the other strand.	pseudogene of Cytochrome P450 superfamily protein;(source:Araport11)
AT2G08210.1	long_noncoding_rna			None;(source:Araport11)
AT2G25950.2	protein_coding			PITH domain protein (DUF1000);(source:Araport11)
AT3G60955.2	pseudogene		a cytochrome P450 pseudogene. overlaps with a real gene on the other strand.	pseudogene of Cytochrome P450 superfamily protein;(source:Araport11)
AT1G07300.2	protein_coding			josephin protein-like protein;(source:Araport11)
AT1G07300.3	protein_coding			josephin protein-like protein;(source:Araport11)
AT5G00510.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G22790.2	protein_coding		Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells.  It binds filamentous actin and is localized to the plasma membrane and plasmodesmata.	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT3G22790.3	protein_coding		Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells.  It binds filamentous actin and is localized to the plasma membrane and plasmodesmata.	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT5G01410.2	protein_coding		Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G59295.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G06315.1	long_noncoding_rna			None;(source:Araport11)
AT2G24285.2	protein_coding			zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT3G02395.1	long_noncoding_rna			None;(source:Araport11)
AT3G07835.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G47960;(source:Araport11)
AT1G76720.2	protein_coding			eukaryotic translation initiation factor 2 (eIF-2) family protein;(source:Araport11)
AT1G78920.3	protein_coding		Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.	vacuolar H+-pyrophosphatase 2;(source:Araport11)
AT1G48360.4	protein_coding		Encodes a FAN1 homolog that is involved in interstrand crosslink repair. FAN1 appears to act in in a different pathway from MUS81 but in similar pathway with RECQ4A, RAD5A and MFH1.	zinc ion binding/nucleic acid binding/hydrolase;(source:Araport11)
AT3G44265.1	protein_coding			beta-galactosidase-like protein;(source:Araport11)
AT3G58930.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT5G66470.2	protein_coding			GTP-binding protein Era-like protein;(source:Araport11)
AT1G07893.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G53500;(source:Araport11)
AT4G03115.5	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G04880.3	protein_coding		Encodes an N6-mAMP deaminase (ADAL, renamed MAPDA) that catabolizes N6-mAMP derived from turnover of m6A-modified RNA to inosine monophosphate in vivo by hydrolytically removing the aminomethyl group.	adenosine/AMP deaminase family protein;(source:Araport11)
AT4G14350.4	protein_coding			AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein;(source:Araport11)
AT3G60955.4	pseudogene		a cytochrome P450 pseudogene. overlaps with a real gene on the other strand.	pseudogene of Cytochrome P450 superfamily protein;(source:Araport11)
AT5G02940.2	protein_coding			ion channel POLLUX-like protein, putative (DUF1012);(source:Araport11)
AT1G54730.11	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G54730.10	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G15070.3	protein_coding		Encodes a functional VIP1/PPIP5K-type ATP-grasp kinase that is involved in both InsP6 to InsP7 conversion and InsP7 to InsP8 conversion. It is the minor isoform in plants and is expressed in pollen.	Phosphoglycerate mutase-like family protein;(source:Araport11)
AT5G38120.2	protein_coding			AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT5G38120.3	protein_coding			AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT5G15070.7	protein_coding		Encodes a functional VIP1/PPIP5K-type ATP-grasp kinase that is involved in both InsP6 to InsP7 conversion and InsP7 to InsP8 conversion. It is the minor isoform in plants and is expressed in pollen.	Phosphoglycerate mutase-like family protein;(source:Araport11)
AT5G15070.6	protein_coding		Encodes a functional VIP1/PPIP5K-type ATP-grasp kinase that is involved in both InsP6 to InsP7 conversion and InsP7 to InsP8 conversion. It is the minor isoform in plants and is expressed in pollen.	Phosphoglycerate mutase-like family protein;(source:Araport11)
AT5G15070.5	protein_coding		Encodes a functional VIP1/PPIP5K-type ATP-grasp kinase that is involved in both InsP6 to InsP7 conversion and InsP7 to InsP8 conversion. It is the minor isoform in plants and is expressed in pollen.	Phosphoglycerate mutase-like family protein;(source:Araport11)
AT1G19430.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G20840.2	protein_coding		The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues.	tonoplast monosaccharide transporter1;(source:Araport11)
AT5G36740.3	protein_coding			Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT1G60430.4	protein_coding			actin-related protein C3;(source:Araport11)
AT1G60430.3	protein_coding			actin-related protein C3;(source:Araport11)
AT2G33793.3	protein_coding		Encodes a protein component of the pre-synaptic chromosome axis. Mutants show quantitative defects in meiotic recombination. Interacts with ASY1/ASY3.	DNA ligase-like protein;(source:Araport11)
AT2G07629.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G48640.3	protein_coding			Cyclin family protein;(source:Araport11)
AT2G27810.4	protein_coding		Encodes a plasma-membrane localized nucleobase transporter capable of transporting adenine, guanine, uracil and hypoxanthine. Likely to be a proton-nucleobase symporter.	nucleobase-ascorbate transporter 12;(source:Araport11)
AT5G05525.1	long_noncoding_rna			None;(source:Araport11)
AT3G18750.6	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 6;(source:Araport11)
AT3G18750.5	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 6;(source:Araport11)
AT3G18750.4	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 6;(source:Araport11)
AT2G41070.5	protein_coding		Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G41070.4	protein_coding		Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT1G05785.3	protein_coding			Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT1G05785.5	protein_coding			Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT1G05785.4	protein_coding			Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT1G05785.7	protein_coding			Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT1G05785.6	protein_coding			Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT1G48360.6	protein_coding		Encodes a FAN1 homolog that is involved in interstrand crosslink repair. FAN1 appears to act in in a different pathway from MUS81 but in similar pathway with RECQ4A, RAD5A and MFH1.	zinc ion binding/nucleic acid binding/hydrolase;(source:Araport11)
AT2G03875.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT1G09167.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G70340;(source:Araport11)
AT3G60740.3	protein_coding		Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ( Primepilz Prime) and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.	ARM repeat superfamily protein;(source:Araport11)
AT3G60740.2	protein_coding		Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ( Primepilz Prime) and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.	ARM repeat superfamily protein;(source:Araport11)
AT3G26090.2	protein_coding		Encodes AtRGS1, a putative membrane receptor for D-glucose.  Also functions as a regulator of G-protein signaling.  Has GTPase-accelerating activity.  Regulates the activity of AtGPA1. Lines over-expressing the gene are more tolerant to dehydration and root elongation. These phenotypes are dependent on ABA.  Nuclear localization of the protein is dependent on ABA. RGS1 endocytosis is induced by JA which promotes its dissociation from GPA1.	REGULATOR OF G-PROTEIN SIGNALING 1;(source:Araport11)
AT4G04335.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G02890;(source:Araport11)
AT3G48330.4	protein_coding		Encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.	protein-l-isoaspartate methyltransferase 1;(source:Araport11)
AT4G13970.2	protein_coding			zinc ion binding protein;(source:Araport11)
AT2G15270.2	protein_coding			PRKR-interacting protein;(source:Araport11)
AT5G07075.1	miRNA_primary_transcript			microRNA ath-MIR4243 precursor;(source:Araport11)
AT3G48330.3	protein_coding		Encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.	protein-l-isoaspartate methyltransferase 1;(source:Araport11)
AT3G21240.2	protein_coding		encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order:  p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.	4-coumarate:CoA ligase 2;(source:Araport11)
AT1G08857.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G66880;(source:Araport11)
AT1G08857.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G66880;(source:Araport11)
AT1G08965.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03475.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03475.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G07470.2	protein_coding			Transcription factor IIA, alpha/beta subunit;(source:Araport11)
AT3G48350.2	protein_coding		Involved in starvation-related responses that curtail primary root growth under severe nutrient limitation.	Cysteine proteinases superfamily protein;(source:Araport11)
AT1G78790.4	protein_coding		Encodes a protein with high similarity to mammalian MHF2 that acts in the same pathway as FANCM to restrain class II meiotic crossing over.	centromere protein X;(source:Araport11)
AT1G78790.3	protein_coding		Encodes a protein with high similarity to mammalian MHF2 that acts in the same pathway as FANCM to restrain class II meiotic crossing over.	centromere protein X;(source:Araport11)
AT5G59050.4	protein_coding			G patch domain protein;(source:Araport11)
AT4G04620.3	protein_coding		Autophagy protein.	Ubiquitin-like superfamily protein;(source:Araport11)
AT3G06100.2	protein_coding		Encodes NIP7;1, an anther-specific boric acid transporter of the aquaporin superfamily regulated by an unusual tyrosine in helix 2 of the transport pore.	NOD26-like intrinsic protein 7;(source:Araport11)
AT5G59050.3	protein_coding			G patch domain protein;(source:Araport11)
AT4G31620.2	protein_coding			Transcriptional factor B3 family protein;(source:Araport11)
AT5G60450.2	protein_coding		Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.	auxin response factor 4;(source:Araport11)
AT4G07070.1	long_noncoding_rna			None;(source:Araport11)
AT2G01460.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G20083.2	pseudogene			pseudogene of cytochrome P450;(source:Araport11)
AT5G27390.3	protein_coding			tagatose-6-phosphate ketose/aldose isomerase, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein);(source:Araport11)
AT5G27390.2	protein_coding			tagatose-6-phosphate ketose/aldose isomerase, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein);(source:Araport11)
AT1G49630.4	protein_coding		Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot.	presequence protease 2;(source:Araport11)
AT1G49630.5	protein_coding		Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot.	presequence protease 2;(source:Araport11)
AT2G09825.1	long_noncoding_rna			None;(source:Araport11)
AT1G08660.3	protein_coding		Encodes a sialyltransferase-like protein that is localized to the Golgi apparatus and is involved in pollen tube growth and pollen germination.	MALE GAMETOPHYTE DEFECTIVE 2;(source:Araport11)
AT4G07050.1	long_noncoding_rna			None;(source:Araport11)
AT1G52200.2	protein_coding			PLAC8 family protein;(source:Araport11)
AT1G55520.4	protein_coding		TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.	TATA binding protein 2;(source:Araport11)
AT3G03970.5	protein_coding		At3G03970 encodes the plant KASH protein SINE2; SINE2 interacts with SUN1 and SUN2 and is localized at the nuclear envelope.	ARM repeat superfamily protein;(source:Araport11)
AT3G03970.4	protein_coding		At3G03970 encodes the plant KASH protein SINE2; SINE2 interacts with SUN1 and SUN2 and is localized at the nuclear envelope.	ARM repeat superfamily protein;(source:Araport11)
AT3G02740.2	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G44125.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G44120;(source:Araport11)
AT1G44125.7	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G44120;(source:Araport11)
AT1G29357.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G29355;(source:Araport11)
AT1G44125.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G44120;(source:Araport11)
AT1G44125.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G44120;(source:Araport11)
AT1G29357.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G29355;(source:Araport11)
AT2G20495.5	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT2G20495.4	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT2G20495.3	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT2G05905.1	long_noncoding_rna			None;(source:Araport11)
AT4G36850.3	protein_coding			PQ-loop repeat family protein / transmembrane family protein;(source:Araport11)
AT5G09235.1	long_noncoding_rna			None;(source:Araport11)
AT2G47370.2	protein_coding			Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT1G31850.4	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G15880.4	protein_coding			WUS-interacting protein 2;(source:Araport11)
AT1G63570.2	protein_coding			Receptor-like protein kinase-related family protein;(source:Araport11)
AT1G61500.2	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61500.3	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT4G15415.3	protein_coding		B Prime regulatory subunit of PP2A (AtB Primegamma)	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT1G72390.2	protein_coding			nuclear receptor coactivator;(source:Araport11)
AT1G23470.2	pseudogene			pseudogene of Pectin lyase-like superfamily protein;(source:Araport11)
AT4G15415.4	protein_coding		B Prime regulatory subunit of PP2A (AtB Primegamma)	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT5G40720.2	protein_coding			C3H4 type zinc finger protein (DUF23);(source:Araport11)
AT1G09217.1	long_noncoding_rna			None;(source:Araport11)
AT3G62360.2	protein_coding			Carbohydrate-binding-like fold;(source:Araport11)
AT1G04263.1	small_nuclear_rna			U5;(source:Araport11)
AT1G77131.2	pseudogene		Annotated as pseudogene of PGSIP, glycogenin glucosyltransferase.Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of plant glycogenin-like starch initiation protein 2;(source:Araport11)
AT5G20740.2	protein_coding			Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT5G06120.9	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT5G07210.2	protein_coding		member of Response Regulator: B- Type	response regulator 21;(source:Araport11)
AT5G53900.3	protein_coding			Serine/threonine-protein kinase WNK (With No Lysine)-like protein;(source:Araport11)
AT5G12000.2	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT4G35360.2	protein_coding			pantothenate kinase;(source:Araport11)
AT4G35360.3	protein_coding			pantothenate kinase;(source:Araport11)
AT5G00405.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G05263.1	long_noncoding_rna			None;(source:Araport11)
AT3G18090.2	protein_coding		Encodes a subunit of RNA polymerase IV (aka RNA polymerase D). NRPD2b is closely related to NRPD2a, but has lower levels of transcription and does not affect endogenous siRNA when mutated.	nuclear RNA polymerase D2B;(source:Araport11)
AT3G18090.3	protein_coding		Encodes a subunit of RNA polymerase IV (aka RNA polymerase D). NRPD2b is closely related to NRPD2a, but has lower levels of transcription and does not affect endogenous siRNA when mutated.	nuclear RNA polymerase D2B;(source:Araport11)
AT3G49430.7	protein_coding		Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SER/ARG-rich protein 34A;(source:Araport11)
AT4G15840.2	protein_coding			BTB/POZ domain-containing protein;(source:Araport11)
AT1G08583.1	long_noncoding_rna			None;(source:Araport11)
AT5G06345.1	long_noncoding_rna			None;(source:Araport11)
AT5G07465.1	long_noncoding_rna			None;(source:Araport11)
AT5G25490.2	protein_coding			Ran BP2/NZF zinc finger-like superfamily protein;(source:Araport11)
AT5G53220.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G04217.1	small_nucleolar_rna			None;(source:Araport11)
AT3G04035.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G20790;(source:Araport11)
AT5G01730.8	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein 4;(source:Araport11)
AT5G40382.2	protein_coding			Cytochrome c oxidase subunit Vc family protein;(source:Araport11)
AT5G09460.uORF1-1	uORF			Derives_from AT5G09460;(source:Araport11)
AT3G20160.2	protein_coding			Terpenoid synthases superfamily protein;(source:Araport11)
AT4G01190.2	protein_coding		Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. Preferentially phosphorylates PtdIns4P. Expressed in flowers and inflorescence stems.	phosphatidylinositol phosphate kinase 10;(source:Araport11)
AT1G60860.3	protein_coding		A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.	ARF-GAP domain 2;(source:Araport11)
AT1G09263.1	long_noncoding_rna			None;(source:Araport11)
AT2G08750.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G35680;(source:Araport11)
AT2G16870.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G61090.2	protein_coding			Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G60800.2	protein_coding		Encodes one of a group of LRR-RLKs, designated as CLAVATA3 INSENSITIVE RECEPTOR KINASES (CIKs), that act as co-receptors and have essential roles in regulating CLV3-mediated stem cell homeostasis.	NSP-interacting kinase 3;(source:Araport11)
AT5G09175.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G64000;(source:Araport11)
AT5G09175.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G64000;(source:Araport11)
AT1G01520.2	protein_coding		RVE3 is one of eleven homologous MYB-like transcription factors in Arabidopsis and a member of the RVE8 clade. Plays a minor role in clock regulation.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G09175.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G64000;(source:Araport11)
AT5G09175.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G64000;(source:Araport11)
AT5G04845.1	long_noncoding_rna			None;(source:Araport11)
AT1G74580.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G63250.3	protein_coding		Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.	homocysteine methyltransferase 2;(source:Araport11)
AT5G09095.1	long_noncoding_rna			None;(source:Araport11)
AT3G26290.2	protein_coding		putative cytochrome P450	cytochrome P450, family 71, subfamily B, polypeptide 26;(source:Araport11)
AT5G00925.1	antisense_rna			Natural antisense transcript overlaps with AT5G03430;(source:Araport11)
AT5G05285.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G65500.2	protein_coding			U-box domain-containing protein kinase family protein;(source:Araport11)
AT5G60430.3	protein_coding			antiporter/ drug transporter;(source:Araport11)
AT3G47770.3	protein_coding			ABC2 homolog 5;(source:Araport11)
AT3G47770.2	protein_coding			ABC2 homolog 5;(source:Araport11)
AT1G08935.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G60430.4	protein_coding			antiporter/ drug transporter;(source:Araport11)
AT1G19180.3	protein_coding		JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably  by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. JAZ1 interacts with MYB21/MYB24,  the WD-repeat/bHLH/MYB complex and IIId bHLH factors (bHLH3, bHLH13, bHLH14 and bHLH17) to regulate jasmonate responses, including stamen development, trichome initiation, anthocyanin accumulation and plant defense.The mRNA is cell-to-cell mobile.	jasmonate-zim-domain protein 1;(source:Araport11)
AT3G06370.3	protein_coding		member of Sodium proton exchanger family	sodium hydrogen exchanger 4;(source:Araport11)
AT3G07625.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G47000;(source:Araport11)
AT2G46495.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G14350.4	protein_coding		Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells.  This phenotype is enhanced in double mutants with MYB88. Its transcript levels change after inducing MUTE expression in a mute background. Also regulates female reproductive development.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
ATMG09980.1	pre_trna			pre-tRNA tRNA-His (anticodon: GTG);(source:Araport11, TAIR10)
AT2G08565.1	long_noncoding_rna			None;(source:Araport11)
AT4G20350.10	protein_coding			oxidoreductase;(source:Araport11)
AT1G15540.4	protein_coding			2-oxoglutarate-dependent dioxygenase-like protein;(source:Araport11)
AT3G49920.4	protein_coding		Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.	voltage dependent anion channel 5;(source:Araport11)
AT5G53220.7	protein_coding			hypothetical protein;(source:Araport11)
AT3G49920.3	protein_coding		Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.	voltage dependent anion channel 5;(source:Araport11)
AT5G01885.1	long_noncoding_rna			None;(source:Araport11)
AT5G04315.1	small_nuclear_rna			U1;(source:Araport11)
AT1G05627.1	miRNA_primary_transcript			microRNA ath-MIR5999 precursor;(source:Araport11)
AT4G05075.1	long_noncoding_rna			None;(source:Araport11)
AT5G00395.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G23090.5	protein_coding			nuclear factor Y, subunit B13;(source:Araport11)
AT1G58525.1	protein_coding			GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT1G23060.4	protein_coding			hypothetical protein;(source:Araport11)
AT3G01100.4	protein_coding		unknown protein, has cDNAs and ESTs associated to it	hypothetical protein 1;(source:Araport11)
AT5G54570.2	protein_coding			beta glucosidase 41;(source:Araport11)
AT5G51630.6	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G38660.5	protein_coding			Amino acid dehydrogenase family protein;(source:Araport11)
AT2G38660.6	protein_coding			Amino acid dehydrogenase family protein;(source:Araport11)
AT2G38660.7	protein_coding			Amino acid dehydrogenase family protein;(source:Araport11)
AT1G69750.5	protein_coding			cytochrome c oxidase 19-2;(source:Araport11)
AT1G69750.4	protein_coding			cytochrome c oxidase 19-2;(source:Araport11)
AT2G12205.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G11640.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G69750.3	protein_coding			cytochrome c oxidase 19-2;(source:Araport11)
AT1G69750.2	protein_coding			cytochrome c oxidase 19-2;(source:Araport11)
AT4G02760.6	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT1G60505.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G60510;(source:Araport11)
AT3G28350.2	pseudogene			pseudogene of spindle assembly checkpoint component;(source:Araport11)
AT4G02760.5	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT1G60505.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G60510;(source:Araport11)
AT1G60505.7	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G60510;(source:Araport11)
AT1G60505.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G60510;(source:Araport11)
AT1G60505.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G60510;(source:Araport11)
AT3G29130.6	protein_coding			kxDL motif protein;(source:Araport11)
AT3G29130.5	protein_coding			kxDL motif protein;(source:Araport11)
AT3G29130.4	protein_coding			kxDL motif protein;(source:Araport11)
AT3G29130.3	protein_coding			kxDL motif protein;(source:Araport11)
AT5G06510.7	protein_coding			nuclear factor Y, subunit A10;(source:Araport11)
AT4G02760.8	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT4G02760.9	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT1G64430.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G55820.6	protein_coding		Encodes a plant ortholog of the inner centromere protein (INCENP), which is implicated in the control of chromosome segregation and cytokinesis in yeast and animals.  Required for female gametophytic cell specification and seed development.	inner centromere protein, ARK-binding region protein;(source:Araport11)
AT5G60020.2	protein_coding		LAC17 appears to have laccase activity based on enzyme assays performed using lac17 mutants. Notably, these mutants appear to have a reduced deposition of G lignin units. LAC17 is expressed in interfascicular fibers and likely contributes to lignin biosynthesis, and hence, cell wall biosynthesis, there.	laccase 17;(source:Araport11)
AT5G60020.3	protein_coding		LAC17 appears to have laccase activity based on enzyme assays performed using lac17 mutants. Notably, these mutants appear to have a reduced deposition of G lignin units. LAC17 is expressed in interfascicular fibers and likely contributes to lignin biosynthesis, and hence, cell wall biosynthesis, there.	laccase 17;(source:Araport11)
AT1G73875.2	protein_coding		Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT1G73875.3	protein_coding		Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT2G09410.1	long_noncoding_rna			None;(source:Araport11)
AT1G15170.2	protein_coding			MATE efflux family protein;(source:Araport11)
AT5G45260.3	protein_coding		Confers resistance to Ralstonia solanacearum. Similar to NBLS-TIR resistance genes,and also contains similarity to transcription factors. Interacts with pathogen effector protein AvrPop2.	Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT3G53760.2	protein_coding		Encodes GCP4 (gamma-Tubulin Complex Protein 4), required for microtubule organization.	GAMMA-TUBULIN COMPLEX PROTEIN 4;(source:Araport11)
AT1G67300.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G67300.4	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G67300.5	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G67300.6	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G76130.2	protein_coding		alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis.	alpha-amylase-like 2;(source:Araport11)
AT1G05820.4	protein_coding			SIGNAL PEPTIDE PEPTIDASE-LIKE 5;(source:Araport11)
AT4G20050.4	protein_coding		Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.	Pectin lyase-like superfamily protein;(source:Araport11)
AT5G03830.3	protein_coding			CDK inhibitor P21 binding protein;(source:Araport11)
AT1G67460.2	protein_coding			Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT1G05820.3	protein_coding			SIGNAL PEPTIDE PEPTIDASE-LIKE 5;(source:Araport11)
AT1G05833.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G23820;(source:Araport11)
AT2G31902.4	antisense_rna			Natural antisense transcript overlaps with AT2G31900;(source:Araport11)
AT1G08783.1	miRNA_primary_transcript			microRNA ath-MIR5018 precursor;(source:Araport11)
AT4G31150.4	protein_coding			endonuclease V family protein;(source:Araport11)
AT4G31150.3	protein_coding			endonuclease V family protein;(source:Araport11)
AT2G31902.2	antisense_rna			Natural antisense transcript overlaps with AT2G31900;(source:Araport11)
AT2G31902.3	antisense_rna			Natural antisense transcript overlaps with AT2G31900;(source:Araport11)
AT1G78070.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G78070.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G51150.4	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT3G51150.5	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT3G08110.1	long_noncoding_rna			None;(source:Araport11)
AT4G06885.1	long_noncoding_rna			None;(source:Araport11)
AT3G01125.1	long_noncoding_rna			None;(source:Araport11)
AT5G08500.2	protein_coding			Transmembrane CLPTM1 family protein;(source:Araport11)
AT4G13670.2	protein_coding			plastid transcriptionally active 5;(source:Araport11)
AT4G13670.3	protein_coding			plastid transcriptionally active 5;(source:Araport11)
AT1G33880.2	protein_coding			Avirulence induced gene (AIG1) family protein;(source:Araport11)
AT3G08170.1	antisense_rna			Natural antisense transcript overlaps with AT3G50950;(source:Araport11)
AT2G20780.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G17660.2	protein_coding		A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes; AGD15 belongs to the class 4, together with AGD14.	ARF-GAP domain 15;(source:Araport11)
AT3G17660.3	protein_coding		A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes; AGD15 belongs to the class 4, together with AGD14.	ARF-GAP domain 15;(source:Araport11)
AT4G07150.1	long_noncoding_rna			None;(source:Araport11)
AT5G01950.8	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G17660.4	protein_coding		A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes; AGD15 belongs to the class 4, together with AGD14.	ARF-GAP domain 15;(source:Araport11)
AT3G17660.5	protein_coding		A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes; AGD15 belongs to the class 4, together with AGD14.	ARF-GAP domain 15;(source:Araport11)
AT3G03702.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G03700;(source:Araport11)
AT3G03702.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G03700;(source:Araport11)
AT5G01950.7	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G50420.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G03702.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G03700;(source:Araport11)
AT3G03702.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G03700;(source:Araport11)
AT3G63280.3	protein_coding		Encodes AtNek4, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 4;(source:Araport11)
AT5G26680.3	protein_coding		Encodes a FEN1 homolog that has double-flap endonuclease activity, weak GEN activity towards bubble DNA structures and flap endonuclease activity towards substrates with a single-flap structure, but lacks the 5&#8242; exonuclease activity towards DNA substrates with a nick on one strand, and GEN activity towards gapped DNA without any flap. It is expressed in rapidly dividing cells and mutants have smaller roots and hypocotyls.	5-3 exonuclease family protein;(source:Araport11)
AT4G04515.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G03340;(source:Araport11)
AT4G17483.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G26795.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G26790;(source:Araport11)
AT5G26680.4	protein_coding		Encodes a FEN1 homolog that has double-flap endonuclease activity, weak GEN activity towards bubble DNA structures and flap endonuclease activity towards substrates with a single-flap structure, but lacks the 5&#8242; exonuclease activity towards DNA substrates with a nick on one strand, and GEN activity towards gapped DNA without any flap. It is expressed in rapidly dividing cells and mutants have smaller roots and hypocotyls.	5-3 exonuclease family protein;(source:Araport11)
AT3G63280.4	protein_coding		Encodes AtNek4, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 4;(source:Araport11)
AT5G27360.5	protein_coding		Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence.	Major facilitator superfamily protein;(source:Araport11)
AT3G28960.3	protein_coding			Transmembrane amino acid transporter family protein;(source:Araport11)
AT2G21280.2	protein_coding		A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G26795.7	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G26790;(source:Araport11)
AT5G03515.1	long_noncoding_rna			None;(source:Araport11)
AT1G11591.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G04880.6	pseudogene		pseudogene of ABC transporter family protein	pseudogene of calcium dependent protein kinase 1;(source:Araport11)
AT2G08965.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G38470;(source:Araport11)
AT4G31870.2	protein_coding		Encodes glutathione peroxidase. Role in the degradation of H2O2 to water using glutathione as electron donor.	glutathione peroxidase 7;(source:Araport11)
AT3G08815.1	long_noncoding_rna			None;(source:Araport11)
AT5G05075.1	long_noncoding_rna			None;(source:Araport11)
AT2G43000.2	protein_coding		Encodes a NAC transcription factor induced by hydrogen peroxide (H2O2). Involved in senescence. Over expression of the gene  strongly delays senescence and enhances tolerance to various abiotic stresses.	NAC domain containing protein 42;(source:Araport11)
AT3G47760.2	protein_coding			ABC2 homolog 4;(source:Araport11)
AT3G08425.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G54790;(source:Araport11)
AT4G19645.3	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT2G04295.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G02750;(source:Araport11)
AT2G05325.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT4G02885.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G02885.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G13880.2	protein_coding			cotton fiber protein;(source:Araport11)
AT2G16485.2	protein_coding		Encodes NERD (Needed for RDR2-independent DNA methylation), a plant-specific GW repeat- and PHD finger-containing protein involved in siRNA-dependent DNA methylation.	GW repeat- and PHD finger-containing protein NERD;(source:Araport11)
AT3G02673.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G49870.2	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G28875.1	protein_coding			serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like protein;(source:Araport11)
AT4G35180.2	protein_coding			LYS/HIS transporter 7;(source:Araport11)
AT2G46780.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G07665.1	long_noncoding_rna			None;(source:Araport11)
AT4G18600.4	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT1G06013.1	long_noncoding_rna			None;(source:Araport11)
AT4G18600.2	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT4G18600.3	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT3G47760.3	protein_coding			ABC2 homolog 4;(source:Araport11)
AT5G02895.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G18470;(source:Araport11)
AT5G52070.6	protein_coding			Agenet domain-containing protein;(source:Araport11)
AT4G08965.1	long_noncoding_rna			None;(source:Araport11)
AT1G04647.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G08315;(source:Araport11)
AT3G08255.1	long_noncoding_rna			None;(source:Araport11)
AT2G14825.1	protein_coding			histone deacetylase-like protein;(source:Araport11)
AT1G09673.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G76780;(source:Araport11)
AT3G55020.2	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G06205.1	novel_transcribed_region			novel transcribed region; detected in flower, pollen;(source:Araport11)
AT1G05005.1	protein_coding			PPR containing protein;(source:Araport11)
AT4G30820.10	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G19645.5	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT4G30820.11	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT1G17090.4	protein_coding			transmembrane protein;(source:Araport11)
AT2G08835.1	long_noncoding_rna			None;(source:Araport11)
AT2G46040.3	protein_coding		Encodes a transcriptional activator that is involved in pollen development. ARID1 is expressed in nuclear bodies of microspore, vegetative and generative cells, and binds to and activates DUO during microgametogenesis.	ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein;(source:Araport11)
AT2G46040.2	protein_coding		Encodes a transcriptional activator that is involved in pollen development. ARID1 is expressed in nuclear bodies of microspore, vegetative and generative cells, and binds to and activates DUO during microgametogenesis.	ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein;(source:Araport11)
AT5G08945.1	long_noncoding_rna			None;(source:Araport11)
AT3G08445.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, light-grown seedling, flower, pollen, aerial;(source:Araport11)
AT3G19910.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G09775.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G52270.2	protein_coding			Transcription initiation factor IIF, beta subunit;(source:Araport11)
AT3G44703.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G14680.2	protein_coding		Encodes one of three A. thaliana ATP-sulfurylases. APS is the first enzyme of sulfate assimilation that catalyzes the formation of adenosine-5'-phosphosulfate from ATP and sulfate.	Pseudouridine synthase/archaeosine transglycosylase-like family protein;(source:Araport11)
AT1G12150.2	protein_coding			weak chloroplast movement under blue light protein (DUF827);(source:Araport11)
AT3G07125.1	long_noncoding_rna			None;(source:Araport11)
AT5G01280.2	protein_coding		Encodes a microtubule-associated protein.	GPI-anchored protein;(source:Araport11)
AT1G20190.2	protein_coding		member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin 11;(source:Araport11)
AT4G08400.3	protein_coding			Proline-rich extensin-like family protein;(source:Araport11)
AT4G09960.5	protein_coding		Encodes a MADS box transcription factor expressed in the carpel and ovules. Plays a maternal role in fertilization and seed development. Controls the structure and mechanical properties of the seed coat.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G15520.2	protein_coding		ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots.	pleiotropic drug resistance 12;(source:Araport11)
AT1G15460.4	protein_coding		Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.	HCO3- transporter family;(source:Araport11)
AT1G08820.5	protein_coding		Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.	vamp/synaptobrevin-associated protein 27-2;(source:Araport11)
AT4G05190.2	protein_coding		ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.	kinesin 5;(source:Araport11)
AT3G19930.2	protein_coding		Encodes a sucrose hydrogen symporter that is induced by wounding.The mRNA is cell-to-cell mobile.	sugar transporter 4;(source:Araport11)
AT5G04880.2	pseudogene		pseudogene of ABC transporter family protein	pseudogene of calcium dependent protein kinase 1;(source:Araport11)
AT2G08265.1	long_noncoding_rna			None;(source:Araport11)
AT2G27060.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G27060.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G30820.19	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G05000.3	protein_coding			Vacuolar protein sorting-associated protein VPS28 family protein;(source:Araport11)
AT1G49940.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G17920.2	protein_coding		Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  Together with HDG11, it is involved in trichome branching.	homeodomain GLABROUS 12;(source:Araport11)
AT3G05640.3	protein_coding		EGR1 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress.EGR1 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT1G35490.2	protein_coding			bZIP family transcription factor;(source:Araport11)
AT4G06320.1	small_nucleolar_rna			None;(source:Araport11)
AT2G25297.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G25297.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G08045.1	long_noncoding_rna			None;(source:Araport11)
AT1G03365.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G56480.2	pseudogene			pseudogene of Pectin lyase-like superfamily protein;(source:Araport11)
AT2G42247.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42250;(source:Araport11)
AT2G42247.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42250;(source:Araport11)
AT2G42247.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42250;(source:Araport11)
AT1G20515.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G20520;(source:Araport11)
AT5G05625.1	long_noncoding_rna			None;(source:Araport11)
AT5G04880.3	pseudogene		pseudogene of ABC transporter family protein	pseudogene of calcium dependent protein kinase 1;(source:Araport11)
AT1G30640.3	protein_coding			Protein kinase family protein;(source:Araport11)
AT1G30640.2	protein_coding			Protein kinase family protein;(source:Araport11)
AT1G65440.4	protein_coding		Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. It encodes a putative WG/GW-repeat protein involved in the regulation of apical-basal polarity of embryo	global transcription factor group B1;(source:Araport11)
AT2G07840.1	long_noncoding_rna			None;(source:Araport11)
AT1G07493.1	long_noncoding_rna			None;(source:Araport11)
AT3G04305.1	long_noncoding_rna			None;(source:Araport11)
AT4G04755.1	long_noncoding_rna			None;(source:Araport11)
AT4G24900.2	protein_coding		Encodes a nuclear C2H2 domain-containing protein involved in embryo and endosperm development.	coiled coil protein;(source:Araport11)
AT3G04515.1	long_noncoding_rna			None;(source:Araport11)
AT1G56460.3	protein_coding			HIT zinc finger and PAPA-1-like domain-containing protein;(source:Araport11)
AT1G53940.2	protein_coding		Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistance	GDSL-motif lipase 2;(source:Araport11)
AT5G19900.3	protein_coding			PRLI-interacting factor;(source:Araport11)
AT2G14680.5	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT1G05497.1	long_noncoding_rna			None;(source:Araport11)
AT2G14680.7	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT3G06450.4	protein_coding			HCO3- transporter family;(source:Araport11)
AT1G55775.1	protein_coding			heavy metal-associated domain protein;(source:Araport11)
AT2G07860.1	long_noncoding_rna			None;(source:Araport11)
AT2G42070.2	protein_coding		Encodes a plastid-localized Nudix hydrolase that has FAD pyrophosphohydrolase activity. Negative feedback regulation of the metabolism of flavins through the hydrolysis of FAD by AtNUDX23 in plastids is involved in the flavin homeostasis in plant cells.	nudix hydrolase homolog 23;(source:Araport11)
AT2G05505.1	long_noncoding_rna			None;(source:Araport11)
AT1G03470.3	protein_coding		Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the nuclear membrane and the vacuolar membrane.	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT4G26480.3	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT5G04690.3	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT3G00620.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00605.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G44230.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G08874.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G16810.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G50930.2	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT5G65620.2	protein_coding			Zincin-like metalloproteases family protein;(source:Araport11)
AT4G21380.2	protein_coding		encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.	receptor kinase 3;(source:Araport11)
AT4G07955.1	long_noncoding_rna			None;(source:Araport11)
AT1G51850.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G66350.2	protein_coding		A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype.  Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.	Lateral root primordium (LRP) protein-like protein;(source:Araport11)
AT5G66350.3	protein_coding		A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype.  Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.	Lateral root primordium (LRP) protein-like protein;(source:Araport11)
AT4G24350.4	protein_coding			Phosphorylase superfamily protein;(source:Araport11)
AT5G10740.2	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT4G20320.6	protein_coding		Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT1G68570.2	protein_coding		NPF3.1 is a membrane localized GA transporter that is expressed in the root endodermis.	Major facilitator superfamily protein;(source:Araport11)
AT5G07295.1	long_noncoding_rna			None;(source:Araport11)
AT5G00765.1	small_nucleolar_rna			None;(source:Araport11)
AT5G04885.3	protein_coding		Encodes a beta-glucosidase involved in xyloglucan metabolism.	Glycosyl hydrolase family protein;(source:Araport11)
AT5G04885.2	protein_coding		Encodes a beta-glucosidase involved in xyloglucan metabolism.	Glycosyl hydrolase family protein;(source:Araport11)
AT1G08800.4	protein_coding			myosin-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT3G29645.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53600.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G06575.1	long_noncoding_rna			None;(source:Araport11)
AT1G08800.3	protein_coding			myosin-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT5G08560.3	protein_coding		WRDR26 is a WD-40 repeat containing protein initially identified as an interacting partner RanBPM. Its expression is induced by abiotic stress as well as various plant growth regulators including IAA, ABA and ethylene. Role as a novel modulator of redox homeostatis, responding to developmental and stress signals to regulate leaf senescence.	transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G06455.1	long_noncoding_rna			None;(source:Araport11)
AT3G08395.1	long_noncoding_rna			None;(source:Araport11)
AT3G62120.3	protein_coding		Encodes a cytosolic prolyl-tRNA synthetase.	Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT1G10380.2	protein_coding			Putative membrane lipoprotein;(source:Araport11)
AT4G03515.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G07483.1	long_noncoding_rna			None;(source:Araport11)
AT5G38540.2	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT4G31570.5	protein_coding			nucleoporin;(source:Araport11)
AT1G26580.3	protein_coding			ELM2 domain protein;(source:Araport11)
AT1G26580.2	protein_coding			ELM2 domain protein;(source:Araport11)
AT4G08665.1	long_noncoding_rna			None;(source:Araport11)
AT1G74510.3	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G11890.7	protein_coding			Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT5G67390.3	protein_coding			glycosyltransferase-like protein;(source:Araport11)
AT3G11890.5	protein_coding			Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G11890.4	protein_coding			Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G11890.3	protein_coding			Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT4G31570.7	protein_coding			nucleoporin;(source:Araport11)
AT5G10200.2	protein_coding			ARM-repeat/Tetratricopeptide repeat (TPR)-like protein;(source:Araport11)
AT5G03125.1	long_noncoding_rna			None;(source:Araport11)
AT5G43500.3	protein_coding		encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.	actin-related protein 9;(source:Araport11)
AT5G43500.4	protein_coding		encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.	actin-related protein 9;(source:Araport11)
AT5G09845.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G67230;(source:Araport11)
AT1G64455.1	protein_coding			collagen triple helix protein;(source:Araport11)
AT1G31255.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G23080.4	protein_coding		Encodes a novel component of auxin efflux that is located  apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo.  It is also involved in pattern specification during root development.  In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific  to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing  cellular auxin efflux.	Auxin efflux carrier family protein;(source:Araport11)
AT3G58040.3	protein_coding		Encodes a RING finger domain containing protein  that interacts with AtRAP2.2 and interacts with ATG6, MUSE13/14 resulting in ubiquitination of ATG6.The mRNA is cell-to-cell mobile.	seven in absentia of Arabidopsis 2;(source:Araport11)
AT3G58040.2	protein_coding		Encodes a RING finger domain containing protein  that interacts with AtRAP2.2 and interacts with ATG6, MUSE13/14 resulting in ubiquitination of ATG6.The mRNA is cell-to-cell mobile.	seven in absentia of Arabidopsis 2;(source:Araport11)
AT3G63340.7	protein_coding			kinase superfamily protein;(source:Araport11)
AT1G08320.5	protein_coding			bZIP transcription factor family protein;(source:Araport11)
AT1G08320.4	protein_coding			bZIP transcription factor family protein;(source:Araport11)
AT4G31570.3	protein_coding			nucleoporin;(source:Araport11)
AT5G26146.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G26150;(source:Araport11)
AT5G03105.1	long_noncoding_rna			None;(source:Araport11)
AT5G07152.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G07150;(source:Araport11)
AT5G07152.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G07150;(source:Araport11)
AT3G06445.1	miRNA_primary_transcript			microRNA ath-MIR5645c precursor;(source:Araport11)
AT1G07367.1	long_noncoding_rna		Member of conserved family of peptides involved in Fe uptake and homeostasis.	None;(source:Araport11)
AT2G30740.13	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G27620.3	protein_coding			intracellular protein transporter;(source:Araport11)
AT5G16420.4	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT5G08435.1	long_noncoding_rna			None;(source:Araport11)
AT2G32410.3	protein_coding			AXR1-like protein;(source:Araport11)
AT5G04125.1	long_noncoding_rna			None;(source:Araport11)
AT2G03110.2	protein_coding			putative RNA-binding protein;(source:Araport11)
AT1G12860.3	protein_coding		Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway.  Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G12860.2	protein_coding		Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway.  Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G25430.2	protein_coding			Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT5G66110.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G05953.1	long_noncoding_rna			None;(source:Araport11)
AT4G05275.1	long_noncoding_rna			None;(source:Araport11)
AT4G35300.11	protein_coding			tonoplast monosaccharide transporter2;(source:Araport11)
AT2G37670.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G23400.3	protein_coding		Encodes FIBRILLIN 4 (FIB4). The fibrillins are a large family of chloroplast proteins that have been linked with stress tolerance and disease resistance. FIBRILLIN 4 is required for plastoglobule development and stress resistance.	Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT3G23400.2	protein_coding		Encodes FIBRILLIN 4 (FIB4). The fibrillins are a large family of chloroplast proteins that have been linked with stress tolerance and disease resistance. FIBRILLIN 4 is required for plastoglobule development and stress resistance.	Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT3G23400.4	protein_coding		Encodes FIBRILLIN 4 (FIB4). The fibrillins are a large family of chloroplast proteins that have been linked with stress tolerance and disease resistance. FIBRILLIN 4 is required for plastoglobule development and stress resistance.	Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT4G02380.3	protein_coding		Encodes AtLEA5 (late embryogenesis abundant like protein).  Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21).  Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses.	senescence-associated gene 21;(source:Araport11)
AT3G46190.2	protein_coding			TRAF-like family protein;(source:Araport11)
AT1G80260.2	protein_coding			Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT1G80260.3	protein_coding			Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT4G06440.1	long_noncoding_rna			None;(source:Araport11)
AT5G23050.2	protein_coding			acyl-activating enzyme 17;(source:Araport11)
AT3G15340.3	protein_coding		Encodes PPI2 (proton pump interactor 2), a homologue of PPI1, a protein that interacts with the plasma membrane H+ ATPase AHA1.	proton pump interactor 2;(source:Araport11)
AT4G14390.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT4G32590.5	protein_coding			2Fe-2S ferredoxin-like superfamily protein;(source:Araport11)
AT4G14390.4	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT4G39010.2	protein_coding		Cellulase involved in cell wall modification during valve dehiscence.	glycosyl hydrolase 9B18;(source:Araport11)
AT2G37650.2	protein_coding			GRAS family transcription factor;(source:Araport11)
AT3G01995.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G07510;(source:Araport11)
AT3G51940.2	protein_coding			oxidoreductase/transition metal ion-binding protein;(source:Araport11)
AT3G07195.2	protein_coding			RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT5G22760.3	protein_coding			PHD finger family protein;(source:Araport11)
AT5G59790.2	protein_coding		SOK5 is a DUF966 domain containing protein expressed in early embryos.	UPSTREAM OF FLC protein (DUF966);(source:Araport11)
ATMG09950.1	pre_trna			pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT5G38600.3	protein_coding			Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT5G38600.2	protein_coding			Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT2G08050.1	long_noncoding_rna			None;(source:Araport11)
AT5G05065.1	long_noncoding_rna			None;(source:Araport11)
AT3G55970.2	protein_coding		One of 4 paralogs encoding a 2-oxoglutarate/Fe(II)-dependent oxygenases  that hydroxylates JA to 12-OH-JA.	jasmonate-regulated gene 21;(source:Araport11)
AT4G10130.3	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G05943.1	long_noncoding_rna			None;(source:Araport11)
AT4G10130.5	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT2G07915.1	miRNA_primary_transcript			microRNA ath-MIR5995b precursor;(source:Araport11)
AT1G07303.1	long_noncoding_rna			None;(source:Araport11)
AT1G09067.1	long_noncoding_rna			None;(source:Araport11)
AT2G33385.3	protein_coding			actin-related protein C2B;(source:Araport11)
AT1G69450.3	protein_coding			Early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT1G28715.1	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT4G31900.3	protein_coding			chromatin remodeling factor;(source:Araport11)
AT3G62280.2	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G33385.4	protein_coding			actin-related protein C2B;(source:Araport11)
AT5G09850.4	protein_coding			Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT5G09850.5	protein_coding			Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT1G53660.2	protein_coding		Nucleotide/sugar transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G53660.3	protein_coding		Nucleotide/sugar transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G53660.4	protein_coding		Nucleotide/sugar transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G53660.5	protein_coding		Nucleotide/sugar transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G09850.2	protein_coding			Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT4G10305.1	protein_coding			reverse transcriptase;(source:Araport11)
AT1G05123.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G14810;(source:Araport11)
AT4G31570.6	protein_coding			nucleoporin;(source:Araport11)
AT1G08825.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G25277.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G56408.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G56410;(source:Araport11)
AT4G32360.9	protein_coding			Pyridine nucleotide-disulfide oxidoreductase family protein;(source:Araport11)
AT5G18190.2	protein_coding		Casein kinase involved in phosphorylation and ubiquination of RYR/PYLs, resulting in negative regulation of ABA response.	Protein kinase family protein;(source:Araport11)
AT3G05932.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G05930;(source:Araport11)
AT3G05932.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G05930;(source:Araport11)
AT5G43910.5	protein_coding			pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT5G43910.4	protein_coding			pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT2G02493.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G52730.2	protein_coding			ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein;(source:Araport11)
AT2G09205.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G40890;(source:Araport11)
AT4G38470.2	protein_coding			ACT-like protein tyrosine kinase family protein;(source:Araport11)
AT5G45710.3	protein_coding		member of Heat Stress Transcription Factor (Hsf) family	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT3G53210.2	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G48640.3	protein_coding			transmembrane protein;(source:Araport11)
AT4G18050.2	protein_coding			P-glycoprotein 9;(source:Araport11)
AT5G13310.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G49220.2	protein_coding			Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT1G04333.1	long_noncoding_rna			None;(source:Araport11)
AT2G43110.2	protein_coding			U3 containing 90S pre-ribosomal complex subunit;(source:Araport11)
AT1G04445.2	protein_coding			C2H2-like zinc finger protein;(source:Araport11)
AT4G03595.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G00370;(source:Araport11)
AT3G52720.4	protein_coding		Encodes an alpha carbonic anhydrase (CAH1) located in the chloroplast stroma. Most chloroplast proteins are encoded by the nuclear genome and imported with the help of sorting signals that are intrinsic parts of the polypeptides. CAH1 takes an alternative route through the secretory pathway, and becomes N-glycosylated before entering the chloroplast.  Glycosylation and intra-molecular disulfide bridge fromation are necessary for the correct folding, ER export, trafficking and activity of the protein.	alpha carbonic anhydrase 1;(source:Araport11)
AT4G14760.4	protein_coding			kinase interacting (KIP1-like) family protein;(source:Araport11)
AT3G09150.4	protein_coding		Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin.  Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase.  It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.	phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2);(source:Araport11)
AT1G74675.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G14760.3	protein_coding			kinase interacting (KIP1-like) family protein;(source:Araport11)
AT3G52720.3	protein_coding		Encodes an alpha carbonic anhydrase (CAH1) located in the chloroplast stroma. Most chloroplast proteins are encoded by the nuclear genome and imported with the help of sorting signals that are intrinsic parts of the polypeptides. CAH1 takes an alternative route through the secretory pathway, and becomes N-glycosylated before entering the chloroplast.  Glycosylation and intra-molecular disulfide bridge fromation are necessary for the correct folding, ER export, trafficking and activity of the protein.	alpha carbonic anhydrase 1;(source:Araport11)
AT1G37150.5	protein_coding		Although HCS2 is predicted to encode a biotin protein ligase / holocarboxylase synthetase (HCS), hcs2 mutants do not show a decrease in HCS activity. A dual-targeted HCS1 (At2g25710) might account for the HCS activity observed in multiple subcellular compartments in Arabidopsis.	holocarboxylase synthetase 2;(source:Araport11)
AT5G22765.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G08070.2	protein_coding		TCP gene involved in heterochronic control of leaf differentiation.	TCP domain protein 17;(source:Araport11)
AT3G59100.2	protein_coding		encodes a protein similar to callose synthase	glucan synthase-like 11;(source:Araport11)
AT1G30755.6	protein_coding			elongation factor G, putative (DUF668);(source:Araport11)
AT5G63570.2	protein_coding		Encodes a protein with homology to glutamate-1-semialdehyde 2,1-aminomutase catalyzing the conversion of glutamate-1-semialdehyde (GSA) into 5-amino levulinate. The expression of this gene was demonstrated to be light-induced.The mRNA is cell-to-cell mobile.	glutamate-1-semialdehyde-2,1-aminomutase;(source:Araport11)
AT1G30755.4	protein_coding			elongation factor G, putative (DUF668);(source:Araport11)
AT1G30755.5	protein_coding			elongation factor G, putative (DUF668);(source:Araport11)
AT1G30755.2	protein_coding			elongation factor G, putative (DUF668);(source:Araport11)
AT1G30755.3	protein_coding			elongation factor G, putative (DUF668);(source:Araport11)
AT4G04295.1	long_noncoding_rna			None;(source:Araport11)
AT5G14650.2	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT3G29794.1	protein_coding			zinc finger MYM-type-like protein;(source:Araport11)
AT5G04945.1	small_nucleolar_rna			None;(source:Araport11)
AT4G27820.3	protein_coding			beta glucosidase 9;(source:Araport11)
AT4G38230.4	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 26;(source:Araport11)
AT2G18360.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G26570.2	protein_coding		Encodes a coiled-coil protein WEB1 (weak chloroplast movement under blue light 1).  WEB1, together with another coiled-coil protein WEB2/PMI2 (At1g66840), maintains the chloroplast photorelocation movement velocity.	WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827);(source:Araport11)
AT1G51830.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G25030.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G02015.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G07568;(source:Araport11)
AT3G25030.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G03095.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G12020.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G07925.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G48320;(source:Araport11)
AT1G04373.1	long_noncoding_rna			None;(source:Araport11)
AT5G14640.2	protein_coding			shaggy-like kinase 13;(source:Araport11)
AT5G02620.4	protein_coding		Encodes a member of the ankyrin repeat protein.  Localized in the endoplasmic reticulum.	ankyrin-like1;(source:Araport11)
AT4G27595.2	protein_coding		Encodes a microtubule-associated protein.	WEB family protein (DUF827);(source:Araport11)
AT5G02620.2	protein_coding		Encodes a member of the ankyrin repeat protein.  Localized in the endoplasmic reticulum.	ankyrin-like1;(source:Araport11)
AT5G02620.3	protein_coding		Encodes a member of the ankyrin repeat protein.  Localized in the endoplasmic reticulum.	ankyrin-like1;(source:Araport11)
AT3G48780.2	protein_coding		Encodes one of the two LCB2 subunits (LCB2a and LCB2b) of serine palmitoyltransferase, an enzyme involved in sphingolipid biosynthesis. LCB2a and LCB2b are functional redundant. Double mutants are gametophytic lethal.The mRNA is cell-to-cell mobile.	serine palmitoyltransferase 1;(source:Araport11)
AT5G21950.7	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G09425.1	long_noncoding_rna			None;(source:Araport11)
AT5G00880.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G02830;(source:Araport11)
AT1G48210.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G04477.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G06515;(source:Araport11)
AT2G47020.4	protein_coding			Peptide chain release factor 1;(source:Araport11)
AT2G47020.5	protein_coding			Peptide chain release factor 1;(source:Araport11)
AT5G23950.2	protein_coding			Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G20260.2	protein_coding			Exostosin family protein;(source:Araport11)
AT5G20260.3	protein_coding			Exostosin family protein;(source:Araport11)
AT2G47020.3	protein_coding			Peptide chain release factor 1;(source:Araport11)
AT4G15245.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G05653.1	long_noncoding_rna			None;(source:Araport11)
AT5G09505.1	long_noncoding_rna			None;(source:Araport11)
AT4G04475.1	small_nucleolar_rna			None;(source:Araport11)
AT3G03135.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G15520;(source:Araport11)
AT3G03620.2	protein_coding			MATE efflux family protein;(source:Araport11)
AT4G12020.10	protein_coding		Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301.	protein kinase family protein;(source:Araport11)
AT4G05305.1	miRNA_primary_transcript			microRNA ath-MIR5645b precursor;(source:Araport11)
AT5G03265.1	miRNA_primary_transcript			microRNA ath-MIR5631 precursor;(source:Araport11)
AT2G37975.2	protein_coding			Yos1-like protein;(source:Araport11)
AT5G19675.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05455.1	miRNA_primary_transcript			microRNA ath-MIR8175 precursor;(source:Araport11)
AT3G54790.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT2G28290.6	protein_coding		Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral  homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates  flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation.  Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms  differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G03155.1	antisense_rna			Natural antisense transcript overlaps with AT3G15610;(source:Araport11)
AT3G03155.2	antisense_rna			Natural antisense transcript overlaps with AT3G15610;(source:Araport11)
AT1G20700.2	protein_coding		Encodes WOX14, a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain.  Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Functions in the shoot meristem organizing center to maintain the stem cells in an undifferentiated state. WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation.	WUSCHEL related homeobox 14;(source:Araport11)
AT1G23020.3	protein_coding		Encodes a ferric chelate reductase whose transcription is regulated by FIT1.  Expressed in the root, shoot, flower and cotyledon.	ferric reduction oxidase 3;(source:Araport11)
AT1G23020.5	protein_coding		Encodes a ferric chelate reductase whose transcription is regulated by FIT1.  Expressed in the root, shoot, flower and cotyledon.	ferric reduction oxidase 3;(source:Araport11)
AT1G23020.4	protein_coding		Encodes a ferric chelate reductase whose transcription is regulated by FIT1.  Expressed in the root, shoot, flower and cotyledon.	ferric reduction oxidase 3;(source:Araport11)
AT1G23020.7	protein_coding		Encodes a ferric chelate reductase whose transcription is regulated by FIT1.  Expressed in the root, shoot, flower and cotyledon.	ferric reduction oxidase 3;(source:Araport11)
AT1G23020.6	protein_coding		Encodes a ferric chelate reductase whose transcription is regulated by FIT1.  Expressed in the root, shoot, flower and cotyledon.	ferric reduction oxidase 3;(source:Araport11)
AT1G27180.6	protein_coding			disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G27180.7	protein_coding			disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G27180.4	protein_coding			disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G27180.5	protein_coding			disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G27180.2	protein_coding			disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G27180.3	protein_coding			disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT2G08610.1	other_rna			None;(source:Araport11)
AT3G47490.4	protein_coding			HNH endonuclease;(source:Araport11)
AT3G47490.5	protein_coding			HNH endonuclease;(source:Araport11)
AT2G35343.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G47490.7	protein_coding			HNH endonuclease;(source:Araport11)
AT2G04852.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G04850;(source:Araport11)
AT2G04852.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G04850;(source:Araport11)
AT1G65540.2	protein_coding			LETM1-like protein;(source:Araport11)
AT1G65540.3	protein_coding			LETM1-like protein;(source:Araport11)
AT2G08950.1	long_noncoding_rna			None;(source:Araport11)
AT5G24350.3	protein_coding		Member of MAG2 complex on the ER that is responsible for efficient transport of seed storage proteins, functions in protein transport between the ER and Golgi apparatus, contain a Zeste?White 10 (ZW10) domain and a Sec39 domain. Required for proper maturation of seed storage proteins.	neuroblastoma-amplified sequence protein;(source:Araport11)
AT3G15520.4	protein_coding			Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT2G09480.1	long_noncoding_rna			None;(source:Araport11)
AT2G48020.4	protein_coding		Encodes a zinc transporter ZIF2. Expression of ZIF2 is regulated by alternative splicing.	Major facilitator superfamily protein;(source:Araport11)
AT3G13420.4	protein_coding			transmembrane protein;(source:Araport11)
AT5G53048.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G53050;(source:Araport11)
AT5G53048.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G53050;(source:Araport11)
AT5G53048.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G53050;(source:Araport11)
AT1G16770.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G43810.4	protein_coding		EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant.	calmodulin 7;(source:Araport11)
AT1G43620.5	protein_coding		Encodes a UDP-glucose:sterol-glucosyltransferase. ugt80b1 mutant plants have reduced steryl glycoside and acyl steryl glycoside levels, reduced seed size, and a transparent testa phenotype. The mutant seeds also have reduced levels of suberization and lipid polyester monomers. ugt80a2/b1 double mutants have normal levels of celluose and normal cold stress tolerance.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G43620.4	protein_coding		Encodes a UDP-glucose:sterol-glucosyltransferase. ugt80b1 mutant plants have reduced steryl glycoside and acyl steryl glycoside levels, reduced seed size, and a transparent testa phenotype. The mutant seeds also have reduced levels of suberization and lipid polyester monomers. ugt80a2/b1 double mutants have normal levels of celluose and normal cold stress tolerance.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G43620.7	protein_coding		Encodes a UDP-glucose:sterol-glucosyltransferase. ugt80b1 mutant plants have reduced steryl glycoside and acyl steryl glycoside levels, reduced seed size, and a transparent testa phenotype. The mutant seeds also have reduced levels of suberization and lipid polyester monomers. ugt80a2/b1 double mutants have normal levels of celluose and normal cold stress tolerance.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G43620.6	protein_coding		Encodes a UDP-glucose:sterol-glucosyltransferase. ugt80b1 mutant plants have reduced steryl glycoside and acyl steryl glycoside levels, reduced seed size, and a transparent testa phenotype. The mutant seeds also have reduced levels of suberization and lipid polyester monomers. ugt80a2/b1 double mutants have normal levels of celluose and normal cold stress tolerance.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G47710.4	protein_coding			Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G14690.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G09665.1	long_noncoding_rna			None;(source:Araport11)
AT5G04445.1	long_noncoding_rna			None;(source:Araport11)
AT1G43620.8	protein_coding		Encodes a UDP-glucose:sterol-glucosyltransferase. ugt80b1 mutant plants have reduced steryl glycoside and acyl steryl glycoside levels, reduced seed size, and a transparent testa phenotype. The mutant seeds also have reduced levels of suberization and lipid polyester monomers. ugt80a2/b1 double mutants have normal levels of celluose and normal cold stress tolerance.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G04790.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G04790.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G28100.6	protein_coding			hypothetical protein;(source:Araport11)
AT2G13370.3	protein_coding			chromatin remodeling 5;(source:Araport11)
AT2G13370.2	protein_coding			chromatin remodeling 5;(source:Araport11)
AT4G05255.1	long_noncoding_rna			None;(source:Araport11)
AT1G14490.2	protein_coding			Putative AT-hook DNA-binding family protein;(source:Araport11)
AT4G07375.1	long_noncoding_rna			None;(source:Araport11)
AT3G02795.1	small_nucleolar_rna			None;(source:Araport11)
AT3G19960.3	protein_coding		member of Myosin-like proteins	myosin 1;(source:Araport11)
AT2G07005.1	long_noncoding_rna			None;(source:Araport11)
AT1G03410.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G62670.2	protein_coding		Encodes a pentatricopeptide  repeat protein required for 5 Prime end processing of nad9 and cox3 mRNAs in mitochondria.	rna processing factor 2;(source:Araport11)
AT4G07385.1	long_noncoding_rna			None;(source:Araport11)
AT5G11290.2	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT5G65440.5	protein_coding			transmembrane protein;(source:Araport11)
AT1G05230.5	protein_coding		Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes.  The mutations do not affect trichome growth or branch number.	homeodomain GLABROUS 2;(source:Araport11)
AT5G65440.7	protein_coding			transmembrane protein;(source:Araport11)
AT1G05230.7	protein_coding		Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes.  The mutations do not affect trichome growth or branch number.	homeodomain GLABROUS 2;(source:Araport11)
AT2G25710.6	protein_coding		Encodes a dual-targeted biotin holocarboxylase synthetase that can localize to the chloroplast and the cytosol. In vitro, it has been shown to catalyze the addition of biotin to the BCCP subunit of acetyl-CoA carboxylase and it can also biotinylate methylcrotonyl-CoA carboxylase. A small upstream ORF in the 5 PrimeUTR (uORF24) regulates the differential targeting of this enzyme.	holocarboxylase synthase 1;(source:Araport11)
AT2G25710.7	protein_coding		Encodes a dual-targeted biotin holocarboxylase synthetase that can localize to the chloroplast and the cytosol. In vitro, it has been shown to catalyze the addition of biotin to the BCCP subunit of acetyl-CoA carboxylase and it can also biotinylate methylcrotonyl-CoA carboxylase. A small upstream ORF in the 5 PrimeUTR (uORF24) regulates the differential targeting of this enzyme.	holocarboxylase synthase 1;(source:Araport11)
AT2G25710.4	protein_coding		Encodes a dual-targeted biotin holocarboxylase synthetase that can localize to the chloroplast and the cytosol. In vitro, it has been shown to catalyze the addition of biotin to the BCCP subunit of acetyl-CoA carboxylase and it can also biotinylate methylcrotonyl-CoA carboxylase. A small upstream ORF in the 5 PrimeUTR (uORF24) regulates the differential targeting of this enzyme.	holocarboxylase synthase 1;(source:Araport11)
AT2G25710.5	protein_coding		Encodes a dual-targeted biotin holocarboxylase synthetase that can localize to the chloroplast and the cytosol. In vitro, it has been shown to catalyze the addition of biotin to the BCCP subunit of acetyl-CoA carboxylase and it can also biotinylate methylcrotonyl-CoA carboxylase. A small upstream ORF in the 5 PrimeUTR (uORF24) regulates the differential targeting of this enzyme.	holocarboxylase synthase 1;(source:Araport11)
AT1G63380.4	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G25710.8	protein_coding		Encodes a dual-targeted biotin holocarboxylase synthetase that can localize to the chloroplast and the cytosol. In vitro, it has been shown to catalyze the addition of biotin to the BCCP subunit of acetyl-CoA carboxylase and it can also biotinylate methylcrotonyl-CoA carboxylase. A small upstream ORF in the 5 PrimeUTR (uORF24) regulates the differential targeting of this enzyme.	holocarboxylase synthase 1;(source:Araport11)
AT4G29100.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G65440.9	protein_coding			transmembrane protein;(source:Araport11)
AT5G65440.8	protein_coding			transmembrane protein;(source:Araport11)
AT1G63380.3	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G07365.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G25180;(source:Araport11)
AT2G17850.2	protein_coding			Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT2G17850.3	protein_coding			Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT5G05195.1	long_noncoding_rna			None;(source:Araport11)
AT4G20480.2	protein_coding			Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT5G03250.2	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G08125.1	long_noncoding_rna			None;(source:Araport11)
AT1G05600.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G11480.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 32;(source:Araport11)
AT3G61690.3	protein_coding		Putative TNAase	nucleotidyltransferase;(source:Araport11)
AT3G01165.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G02840;(source:Araport11)
AT1G72420.3	protein_coding			NADH:ubiquinone oxidoreductase intermediate-associated protein 30;(source:Araport11)
AT1G72420.2	protein_coding			NADH:ubiquinone oxidoreductase intermediate-associated protein 30;(source:Araport11)
AT1G04697.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G09390;(source:Araport11)
AT1G72420.6	protein_coding			NADH:ubiquinone oxidoreductase intermediate-associated protein 30;(source:Araport11)
AT1G72420.5	protein_coding			NADH:ubiquinone oxidoreductase intermediate-associated protein 30;(source:Araport11)
AT1G72420.4	protein_coding			NADH:ubiquinone oxidoreductase intermediate-associated protein 30;(source:Araport11)
AT5G45370.5	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G74750.4	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G74750.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G74750.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G09550.1	long_noncoding_rna			None;(source:Araport11)
AT2G20180.6	protein_coding		Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark.  It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls.  Light reduces this activity in a phy-dependent manner.  The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis.  It also negatively regulates GA3 oxidase expression.	phytochrome interacting factor 3-like 5;(source:Araport11)
AT3G01435.2	protein_coding			Expressed protein;(source:Araport11)
AT4G05805.1	long_noncoding_rna			None;(source:Araport11)
AT2G09290.1	long_noncoding_rna			None;(source:Araport11)
AT1G06573.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G32460;(source:Araport11)
AT5G03720.2	protein_coding		Member of Heat Stress Transcription Factor (Hsf) family. Expression is regulated by DREB2A and in turn HSFA3 regulates the expression of hsps Hsp18.1-CI and Hsp26.5-MII35S. Involved in  establishing thermotolerence.	heat shock transcription factor A3;(source:Araport11)
AT5G20635.2	protein_coding		Encodes an atypical heterotrimeric G-protein gamma-subunit involved in guard cell K+-channel regulation and morphological development.	guanine nucleotide-binding protein subunit gamma;(source:Araport11)
AT1G07123.1	long_noncoding_rna			None;(source:Araport11)
AT1G79840.5	protein_coding		Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development.  Directly regulated by WER.	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein;(source:Araport11)
AT5G09130.1	small_nucleolar_rna			None;(source:Araport11)
AT2G42210.5	protein_coding		Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein;(source:Araport11)
AT4G15930.2	protein_coding			Dynein light chain type 1 family protein;(source:Araport11)
AT5G41763.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G68920.4	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G00170.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G07595.1	novel_transcribed_region			novel transcribed region; detected in root, light-grown seedling, pollen, aerial;(source:Araport11)
AT3G00170.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G07090.1	long_noncoding_rna			None;(source:Araport11)
AT4G36870.4	protein_coding		Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw2 may act redundantly to repress BP in leaves.	BEL1-like homeodomain 2;(source:Araport11)
AT4G12790.6	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G06155.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G41320;(source:Araport11)
AT5G44610.3	protein_coding		Encodes a protein with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization. Associates to the plasma membrane and interacts with calmodulin and phosphatidylinositol phosphates, indicating an involvement in cellular signal transduction. Expression is enhanced by abiotic and hormonal factors. Induced during senescence.Interacts with Ca2+/calmodulin complex, phosphatidylinositol phosphates, and free Ca2+.	microtubule-associated protein 18;(source:Araport11)
AT3G16390.2	protein_coding		Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.The mRNA is cell-to-cell mobile.	nitrile specifier protein 3;(source:Araport11)
AT4G05335.1	long_noncoding_rna			None;(source:Araport11)
AT2G09425.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G43160;(source:Araport11)
AT3G08325.1	long_noncoding_rna			None;(source:Araport11)
AT5G27270.4	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G08865.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G37340;(source:Araport11)
AT4G21534.2	protein_coding			Diacylglycerol kinase family protein;(source:Araport11)
AT1G79710.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G71220.3	protein_coding		Encodes UDP-glucose:glycoprotein glucosyltransferase. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the  presence of elf18, and EFR accumulation and signalling.	EMS-MUTAGENIZED BRI1 SUPPRESSOR 1;(source:Araport11)
AT5G00970.1	long_noncoding_rna			None;(source:Araport11)
AT4G06185.1	long_noncoding_rna			None;(source:Araport11)
AT1G05597.1	long_noncoding_rna			None;(source:Araport11)
AT1G10810.3	protein_coding			NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT2G20110.3	protein_coding			Tesmin/TSO1-like CXC domain-containing protein;(source:Araport11)
AT4G00340.2	protein_coding		Encodes a receptor-like protein kinase that is expressed in roots.	receptor-like protein kinase 4;(source:Araport11)
AT5G42080.4	protein_coding		Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching.  Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.	dynamin-like protein;(source:Araport11)
AT5G00910.1	long_noncoding_rna			None;(source:Araport11)
AT3G57780.2	protein_coding			nucleolar-like protein;(source:Araport11)
AT1G76100.2	protein_coding		One of two Arabidopsis plastocyanin genes. Expressed at 1/10th level of PETE2. Does not respond to increased copper levels and is thought to be the isoform that participates in electron transport under copper-limiting conditions. Mutation of this gene does not have obvious effect on photosynthesis.	plastocyanin 1;(source:Araport11)
AT3G08260.1	long_noncoding_rna			None;(source:Araport11)
AT4G36630.2	protein_coding			Vacuolar sorting protein 39;(source:Araport11)
AT5G08705.1	long_noncoding_rna			None;(source:Araport11)
ATMG09730.1	pre_trna			pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
AT4G04710.4	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent kinase-like protein;(source:Araport11)
AT2G06895.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, dark-grown seedling, light-grown seedling, flower, pollen;(source:Araport11)
AT5G05925.1	long_noncoding_rna			None;(source:Araport11)
AT4G14770.2	protein_coding		Regulates fate transition and cell Divisions in the stomatal lineage.	TESMIN/TSO1-like CXC 2;(source:Araport11)
AT1G07133.1	long_noncoding_rna			None;(source:Araport11)
AT5G03875.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G25080;(source:Araport11)
AT5G52040.6	protein_coding		Encodes an arginine/serine-rich splicing factor. Transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS41 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G52040.5	protein_coding		Encodes an arginine/serine-rich splicing factor. Transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. RS41 binds to HYL1 and co-localizes to the nuclear dicing body. Along with RS41, it appears to be involved in pri-miRNA processing and miRNA biogenesis.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G07280.5	pseudogene			None;(source:Araport11)
AT3G07280.4	pseudogene			None;(source:Araport11)
AT3G07280.6	pseudogene			None;(source:Araport11)
AT5G62110.2	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT1G64320.2	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT3G07280.3	pseudogene			None;(source:Araport11)
AT3G07280.2	pseudogene			None;(source:Araport11)
AT4G34900.3	protein_coding			xanthine dehydrogenase 2;(source:Araport11)
AT4G34900.2	protein_coding			xanthine dehydrogenase 2;(source:Araport11)
AT3G44665.1	protein_coding			tyrosine phosphatase;(source:Araport11)
AT5G05380.3	protein_coding			prenylated RAB acceptor 1.B3;(source:Araport11)
AT5G05380.4	protein_coding			prenylated RAB acceptor 1.B3;(source:Araport11)
AT1G05813.1	other_rna			None;(source:Araport11)
AT2G46375.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G05367.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G18040;(source:Araport11)
AT3G07825.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G47810;(source:Araport11)
AT3G10250.4	protein_coding			histidine-tRNA ligase;(source:Araport11)
AT3G10250.5	protein_coding			histidine-tRNA ligase;(source:Araport11)
AT3G10250.3	protein_coding			histidine-tRNA ligase;(source:Araport11)
AT1G52130.2	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G20010.8	protein_coding		Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG2 and interacts physically with SUVR2, another component of the RdDM pathway.	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT3G13276.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G06935.1	long_noncoding_rna			None;(source:Araport11)
AT5G01780.4	protein_coding			2-oxoglutarate-dependent dioxygenase family protein;(source:Araport11)
AT5G01780.5	protein_coding			2-oxoglutarate-dependent dioxygenase family protein;(source:Araport11)
AT4G00155.1	protein_coding			retrotransposon Gag;(source:Araport11)
AT5G09915.1	long_noncoding_rna			None;(source:Araport11)
AT5G55170.2	protein_coding		Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.	small ubiquitin-like modifier 3;(source:Araport11)
AT5G55170.3	protein_coding		Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.	small ubiquitin-like modifier 3;(source:Araport11)
AT4G08465.1	long_noncoding_rna			None;(source:Araport11)
AT2G20830.4	protein_coding			folic acid binding / transferase;(source:Araport11)
AT2G20830.5	protein_coding			folic acid binding / transferase;(source:Araport11)
AT2G20830.6	protein_coding			folic acid binding / transferase;(source:Araport11)
AT5G01135.1	small_nucleolar_rna			None;(source:Araport11)
AT3G06650.2	protein_coding		One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase	ATP-citrate lyase B-1;(source:Araport11)
AT5G52547.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G18540.3	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT3G07095.1	miRNA_primary_transcript			microRNA ath-MIR8174 precursor;(source:Araport11)
AT5G52547.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G29060.2	protein_coding			Target SNARE coiled-coil domain protein;(source:Araport11)
AT2G04740.4	protein_coding			ankyrin repeat family protein;(source:Araport11)
AT1G09980.3	protein_coding			Putative serine esterase family protein;(source:Araport11)
AT5G39500.2	protein_coding		Encodes GNOM-LIKE1/ERMO1, a member of ARF-GEF family.  Required for endoplasmic reticulum (ER) morphology.The mRNA is cell-to-cell mobile.	GNOM-like 1;(source:Araport11)
AT1G12710.2	protein_coding		This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.	phloem protein 2-A12;(source:Araport11)
AT2G04740.2	protein_coding			ankyrin repeat family protein;(source:Araport11)
AT2G04740.3	protein_coding			ankyrin repeat family protein;(source:Araport11)
AT3G16800.5	protein_coding		EGR3 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress, EGR3 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT3G16800.4	protein_coding		EGR3 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress, EGR3 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT2G08930.1	long_noncoding_rna			None;(source:Araport11)
AT3G16800.6	protein_coding		EGR3 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress, EGR3 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT5G01155.1	long_noncoding_rna			None;(source:Araport11)
AT1G73850.2	protein_coding			DNA ligase (DUF1666);(source:Araport11)
AT5G52155.1	protein_coding			E3 ubiquitin ligase BIG BROTHER-like protein;(source:Araport11)
AT3G17920.3	protein_coding			Outer arm dynein light chain 1 protein;(source:Araport11)
AT1G43825.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G25310.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT4G02660.2	protein_coding			Beige/BEACH and WD40 domain-containing protein;(source:Araport11)
AT2G08395.1	long_noncoding_rna			None;(source:Araport11)
AT2G09325.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G41960;(source:Araport11)
AT5G55810.3	protein_coding		encodes a bi-functional enzyme that expresses both nicotinamide-nucleotide adenylyltransferase (2.7.7.1) and nicotinate-nucleotide adenylyltransferase (2.7.7.18)activity.	nicotinate/nicotinamide mononucleotide adenyltransferase;(source:Araport11)
AT5G55130.3	protein_coding		putative molybdopterin synthase sulphurylase (cnx5)	co-factor for nitrate, reductase and xanthine dehydrogenase 5;(source:Araport11)
AT4G04845.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, aerial;(source:Araport11)
AT1G79485.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G09405.2	protein_coding			Pectinacetylesterase family protein;(source:Araport11)
AT2G06185.1	long_noncoding_rna			None;(source:Araport11)
AT2G25290.4	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT1G07170.4	protein_coding		Similar to human splicing factor 3b, 14 kda subunit, SF3b14b.	PHF5-like protein;(source:Araport11)
AT5G11980.2	protein_coding		COG8 is a component of a putative  conserved oligomeric Golgi (COG) complex that is thought to be involved in tethering of retrograde intra Golgi vesicles. It is required for proper deposition of cell wall materials in pollen tube growth. In mutant pollen,golgi appear abnormal.When homozygotes can be produced (by complementing the defect in pollen), the plants are embryo lethal suggesting an essential function. COG8 interacts with several other putative COG components.	conserved oligomeric Golgi complex component-related / COG complex component-like protein;(source:Araport11)
AT4G13100.8	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G23890.2	protein_coding			HAD-superfamily hydrolase, subfamily IG, 5-nucleotidase;(source:Araport11)
AT1G25682.2	protein_coding			coiled-coil protein (DUF572);(source:Araport11)
AT5G37480.2	protein_coding			maltase-glucoamylase, intestinal protein;(source:Araport11)
AT4G23280.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 20;(source:Araport11)
AT4G23280.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 20;(source:Araport11)
AT5G60980.3	protein_coding			Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT5G28640.2	protein_coding		Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.	SSXT family protein;(source:Araport11)
AT5G28640.3	protein_coding		Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.	SSXT family protein;(source:Araport11)
AT3G03255.1	miRNA_primary_transcript			microRNA ath-MIR782 precursor;(source:Araport11)
AT4G13100.6	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G13100.7	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G23985.4	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.5	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.6	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.7	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G04540.4	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 39;(source:Araport11)
AT2G08685.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G34790;(source:Araport11)
AT2G23985.8	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.9	protein_coding			hypothetical protein;(source:Araport11)
AT4G04540.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 39;(source:Araport11)
AT4G04540.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 39;(source:Araport11)
AT5G00795.1	long_noncoding_rna			None;(source:Araport11)
AT4G03875.1	long_noncoding_rna			None;(source:Araport11)
AT5G03005.1	long_noncoding_rna			None;(source:Araport11)
AT5G56850.8	protein_coding			hypothetical protein;(source:Araport11)
AT5G56850.4	protein_coding			hypothetical protein;(source:Araport11)
AT5G56850.5	protein_coding			hypothetical protein;(source:Araport11)
AT2G07115.1	long_noncoding_rna			None;(source:Araport11)
AT5G56850.7	protein_coding			hypothetical protein;(source:Araport11)
AT5G56850.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G01510.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G19910.2	protein_coding			RNA-dependent RNA polymerase family protein;(source:Araport11)
AT2G39810.2	protein_coding		A novel protein with a RING finger motif near the amino terminus. Negative  regulator of cold responses. Functions as an E3 ligase required for the ubiquitination of ICE1. HOS1  physically interacts with ICE1 and mediates the ubiquitination of  ICE1 both in vitro and in vivo. Overexpression represses the expression of CBFs and their downstream genes and confers increased sensitivity to freezing stress.The mRNA is cell-to-cell mobile.	ubiquitin-protein ligase;(source:Araport11)
AT2G34530.3	protein_coding			transmembrane protein;(source:Araport11)
AT2G34530.4	protein_coding			transmembrane protein;(source:Araport11)
AT2G34530.5	protein_coding			transmembrane protein;(source:Araport11)
AT1G08393.1	long_noncoding_rna			None;(source:Araport11)
AT3G51630.uORF1	uORF			Derives_from AT3G51630;(source:Araport11)
AT1G10300.2	protein_coding		GTPase  involved in HA - and ABA-mediated signaling pathways, particularly during defense respnses to pathogens. A truncated version of NOG1-2 has been detected in Col-0, Ler-0, Rsch-4 ecotypes. Functions similarly to the paralogous gene NOG1-1.	Nucleolar GTP-binding protein;(source:Araport11)
AT2G06365.1	long_noncoding_rna			None;(source:Araport11)
AT3G25440.5	protein_coding			RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT3G54770.3	protein_coding		Encodes a putative RNA binding protein that is localized in the nucleus and affects ABA-regulated seed germination of Arabidopsis.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G42240.4	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G08835.1	long_noncoding_rna			None;(source:Araport11)
AT1G53945.1	protein_coding			polyubiquitin-like protein;(source:Araport11)
AT1G72960.2	protein_coding			Root hair defective 3 GTP-binding protein (RHD3);(source:Araport11)
AT1G74430.2	protein_coding		Encodes a putative transcription factor (MYB95).The mRNA is cell-to-cell mobile.	myb domain protein 95;(source:Araport11)
AT2G17036.2	protein_coding			F-box SKIP23-like protein (DUF295);(source:Araport11)
AT1G31772.2	protein_coding		Encodes a defensin-like (DEFL) family protein.	Defensin-like (DEFL) family protein;(source:Araport11)
AT5G17430.2	protein_coding		Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium. PLT4 acts after PLT3,5 and 7 during lateral roof formation.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G22350.4	protein_coding			Ubiquitin C-terminal hydrolases superfamily protein;(source:Araport11)
AT5G51660.4	protein_coding			cleavage and polyadenylation specificity factor 160;(source:Araport11)
AT5G51660.2	protein_coding			cleavage and polyadenylation specificity factor 160;(source:Araport11)
AT5G51660.3	protein_coding			cleavage and polyadenylation specificity factor 160;(source:Araport11)
AT5G03165.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G20500;(source:Araport11)
AT5G64970.2	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G27270.5	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G04570.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.The mRNA is cell-to-cell mobile.	cysteine-rich RLK (RECEPTOR-like protein kinase) 40;(source:Araport11)
AT5G27270.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G27270.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G09855.2	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, aerial, shoot apical meristem;(source:Araport11)
AT2G11000.4	protein_coding		Encodes a non-functional Arabidopsis homolog of the yeast protein MAK10, a component of the N-terminal acetyltransferase complex C. Mutant plants have normal photosynthesis as well as growth rates and pigmentation comparable to wild type.	MAK10 homologue;(source:Araport11)
AT3G02440.2	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 20;(source:Araport11)
AT2G09855.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, aerial, shoot apical meristem;(source:Araport11)
AT1G09663.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G76760;(source:Araport11)
AT2G11000.3	protein_coding		Encodes a non-functional Arabidopsis homolog of the yeast protein MAK10, a component of the N-terminal acetyltransferase complex C. Mutant plants have normal photosynthesis as well as growth rates and pigmentation comparable to wild type.	MAK10 homologue;(source:Araport11)
AT1G01420.2	protein_coding			UDP-glucosyl transferase 72B3;(source:Araport11)
AT1G06347.1	long_noncoding_rna			None;(source:Araport11)
AT1G67800.6	protein_coding			Copine (Calcium-dependent phospholipid-binding protein) family;(source:Araport11)
AT1G67800.5	protein_coding			Copine (Calcium-dependent phospholipid-binding protein) family;(source:Araport11)
AT5G30490.3	protein_coding			craniofacial development-like protein;(source:Araport11)
AT2G38100.2	protein_coding		Encodes a nitrate transporter that is involved in nitrogen accumulation in embryos.	proton-dependent oligopeptide transport (POT) family protein;(source:Araport11)
AT3G00870.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G02600.8	protein_coding		Encodes phosphatidic acid phosphatase. Expressed during germination.	lipid phosphate phosphatase 3;(source:Araport11)
AT3G02600.9	protein_coding		Encodes phosphatidic acid phosphatase. Expressed during germination.	lipid phosphate phosphatase 3;(source:Araport11)
AT3G02600.6	protein_coding		Encodes phosphatidic acid phosphatase. Expressed during germination.	lipid phosphate phosphatase 3;(source:Araport11)
AT2G41705.3	protein_coding		Encodes a fluoride export protein.	camphor resistance CrcB family protein;(source:Araport11)
AT2G39000.4	protein_coding		Encodes a chloroplast localized n-acetyltransfefase involved in  N-terminal protein amino acid acetylation.	Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G04923.1	long_noncoding_rna			None;(source:Araport11)
AT2G41705.4	protein_coding		Encodes a fluoride export protein.	camphor resistance CrcB family protein;(source:Araport11)
AT4G09075.1	long_noncoding_rna			None;(source:Araport11)
AT3G10605.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G10605.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G23740.4	protein_coding		Encodes a SET-domain protein SUVR5 that mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.	histone-lysine N-methyltransferase SUVR5;(source:Araport11)
AT2G23740.3	protein_coding		Encodes a SET-domain protein SUVR5 that mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.	histone-lysine N-methyltransferase SUVR5;(source:Araport11)
AT5G06120.8	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT5G02110.2	protein_coding		Encodes CYCLIN D7;1. Overexpression of CYCD7;1 induces cell proliferation and cell enlargement in the embryo and endosperm leading to overgrowth.	CYCLIN D7;(source:Araport11)
AT5G06120.5	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT2G00380.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G06120.7	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT5G06120.6	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT4G03415.3	protein_coding		Encodes a myristoylated 2C-type protein phosphatase that interacts with AGB1 and is localized to the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT1G73760.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G02620.2	protein_coding			Plant stearoyl-acyl-carrier-protein desaturase family protein;(source:Araport11)
AT3G02620.3	protein_coding			Plant stearoyl-acyl-carrier-protein desaturase family protein;(source:Araport11)
AT2G08845.1	long_noncoding_rna			None;(source:Araport11)
AT1G71910.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G06100.5	protein_coding		Encodes a member of the myb family of transcription factors (MYB33), contains Pfam profile: PF00249 myb DNA-binding domain. Double mutants with MYB65 are male sterile- anthers are small, pollen development is defective. Spatial expression appears to be under the control of miR159, contains a target site for this micro RNA. A highly conserved RNA secondary structure abuts the miR159 binding site which facilitates its regulation by miR159. When the target site is mutated, expression is detected in leaves, roots, anther filament, pistil. The expression of a translational fusion is specific to anther locules in contrast to constructs lacking the miR159 target site. Phenotype is conditional and can be restored by lower temperature or higher light intensity.	myb domain protein 33;(source:Araport11)
AT5G06100.4	protein_coding		Encodes a member of the myb family of transcription factors (MYB33), contains Pfam profile: PF00249 myb DNA-binding domain. Double mutants with MYB65 are male sterile- anthers are small, pollen development is defective. Spatial expression appears to be under the control of miR159, contains a target site for this micro RNA. A highly conserved RNA secondary structure abuts the miR159 binding site which facilitates its regulation by miR159. When the target site is mutated, expression is detected in leaves, roots, anther filament, pistil. The expression of a translational fusion is specific to anther locules in contrast to constructs lacking the miR159 target site. Phenotype is conditional and can be restored by lower temperature or higher light intensity.	myb domain protein 33;(source:Araport11)
AT3G08230.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52105;(source:Araport11)
AT1G80060.2	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT4G11480.4	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 32;(source:Araport11)
AT5G46710.2	protein_coding			PLATZ transcription factor family protein;(source:Araport11)
AT4G11480.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 32;(source:Araport11)
AT2G24690.2	protein_coding			Transcriptional factor B3 family protein;(source:Araport11)
AT5G65685.3	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G17400.3	protein_coding		Protein of unknown function. Similar to LAZY1, a gene required or gravitropic response in shoots and roots. Involved in determining lateral root branch angle.	hypothetical protein;(source:Araport11)
AT5G44610.2	protein_coding		Encodes a protein with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization. Associates to the plasma membrane and interacts with calmodulin and phosphatidylinositol phosphates, indicating an involvement in cellular signal transduction. Expression is enhanced by abiotic and hormonal factors. Induced during senescence.Interacts with Ca2+/calmodulin complex, phosphatidylinositol phosphates, and free Ca2+.	microtubule-associated protein 18;(source:Araport11)
AT1G08835.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G50600.3	protein_coding		Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family.	scarecrow-like 5;(source:Araport11)
AT1G50600.2	protein_coding		Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family.	scarecrow-like 5;(source:Araport11)
AT2G02910.2	protein_coding			transmembrane protein (DUF616);(source:Araport11)
AT5G08385.1	long_noncoding_rna			None;(source:Araport11)
AT1G06363.1	long_noncoding_rna			None;(source:Araport11)
AT1G64633.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G27270.2	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G72070.2	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G05675.3	protein_coding			BTB/POZ domain-containing protein;(source:Araport11)
AT1G49500.2	protein_coding			transcription initiation factor TFIID subunit 1b-like protein;(source:Araport11)
AT1G09453.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74420;(source:Araport11)
AT2G08180.1	long_noncoding_rna			None;(source:Araport11)
AT3G46616.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G46616.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G56570.2	protein_coding		Encodes a mitochondria-localized pentatricopeptide repeat protein PGN.  Functions in defense against necrotrophic fungi and abiotic stress tolerance.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G04817.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G10747;(source:Araport11)
AT3G56860.9	protein_coding		encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3 Prime-UTRs and contributing to the stabilization of mRNAs in the nucleus.	UBP1-associated protein 2A;(source:Araport11)
AT3G56860.8	protein_coding		encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3 Prime-UTRs and contributing to the stabilization of mRNAs in the nucleus.	UBP1-associated protein 2A;(source:Araport11)
AT1G07563.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G49530;(source:Araport11)
AT1G08955.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G19485.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G06485.1	long_noncoding_rna			None;(source:Araport11)
AT5G57380.2	protein_coding		Encodes a plant homeodomain protein VERNALIZATION INSENSITIVE 3 (VIN3).  In planta VIN3 and VRN2, VERNALIZATION 2, are part of a large protein complex that can include the polycomb group (PcG) proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF), and SWINGER (SWN or EZA1).  The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization.	Fibronectin type III domain-containing protein;(source:Araport11)
AT3G07440.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G27250.2	protein_coding		ABA&#8208;induced transcription repressor that acts as feedback regulator in ABA signalling.	hypothetical protein;(source:Araport11)
AT5G14400.4	protein_coding		Encodes a brassinosteroid C-22 hydroxylase.	cytochrome P450, family 724, subfamily A, polypeptide 1;(source:Araport11)
AT4G37140.2	protein_coding		Encodes a protein with similarity to SABP2, a methyl salicylate esterase from tobacco. However, this protein is truncated and lacks two of the residues of the predicted catalytic triad, suggesting that it does not have this enzymatic activity.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G07547.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G49360;(source:Araport11)
AT3G43190.2	protein_coding		Encodes a protein with sucrose synthase activity (SUS4).	sucrose synthase 4;(source:Araport11)
AT1G58215.1	protein_coding			spindle pole body component 110;(source:Araport11)
AT1G51300.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G07965.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G23945;(source:Araport11)
AT4G10450.2	protein_coding			Ribosomal protein L6 family;(source:Araport11)
AT1G30810.3	protein_coding		JMJ18 encodes a novel JmjC domain- containing histone H3K4 demethylase.	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11)
AT1G05803.1	long_noncoding_rna			None;(source:Araport11)
AT4G06835.1	long_noncoding_rna			None;(source:Araport11)
AT5G07400.4	protein_coding			forkhead-associated domain-containing protein / FHA domain-containing protein;(source:Araport11)
AT5G05825.1	long_noncoding_rna			None;(source:Araport11)
AT1G04970.3	protein_coding		Encodes one of the two LBP/BPI related proteins (AT1G04970/LBR-1, AT3G20270/LBR-2) that bind to LPS directly and regulate PR1 expression.	lipid-binding serum glycoprotein family protein;(source:Araport11)
AT5G07400.7	protein_coding			forkhead-associated domain-containing protein / FHA domain-containing protein;(source:Araport11)
AT2G34250.3	protein_coding			SecY protein transport family protein;(source:Araport11)
AT3G49850.2	protein_coding		Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.Single Myb Histone (SMH) gene family member. Contains terminal acidic SANT domain.	telomere repeat binding factor 3;(source:Araport11)
AT3G18300.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G61370.2	protein_coding			pre-mRNA-splicing factor CWC22-like protein (DUF3245);(source:Araport11)
AT4G01985.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G33220.2	protein_coding			pectin methylesterase 44;(source:Araport11)
AT2G09750.1	long_noncoding_rna			None;(source:Araport11)
AT5G50240.4	protein_coding		L-isoaspartyl methyltransferase 2 (PIMT2)gene,  alternatively spliced.	protein-l-isoaspartate methyltransferase 2;(source:Araport11)
AT5G45220.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G15700.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G05095.1	long_noncoding_rna			None;(source:Araport11)
AT2G47300.4	protein_coding		Encodes a protein involved in rRNA but not tRNA maturation.	ribonuclease Ps;(source:Araport11)
AT2G00500.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G14140.3	protein_coding		This gene is predicted to encode a DNA methyltransferase. A plant line expressing an RNAi construct directed against DMT2 has reduced agrobacterium-mediated tumor formation.	DNA methyltransferase 2;(source:Araport11)
AT1G14120.2	protein_coding		DAO2 is an IAA oxidase expressed in root caps. it is a member of a family of dioxygenase and 2OG Fe(II) oxygenase domain and DAO domain containing proteins. It is expressed specifically in root cap cells and does not appear to be the major IAA oxidase in planta.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G14120.3	protein_coding		DAO2 is an IAA oxidase expressed in root caps. it is a member of a family of dioxygenase and 2OG Fe(II) oxygenase domain and DAO domain containing proteins. It is expressed specifically in root cap cells and does not appear to be the major IAA oxidase in planta.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G15640.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G10800.3	protein_coding			RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT5G10800.2	protein_coding			RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT2G09305.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G41710;(source:Araport11)
AT5G22780.2	protein_coding			Adaptor protein complex AP-2, alpha subunit;(source:Araport11)
AT5G11920.3	protein_coding		Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.	6-%261-fructan exohydrolase;(source:Araport11)
AT4G00460.4	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 3;(source:Araport11)
AT5G11020.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G53350.6	protein_coding		Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.	ROP interactive partner 4;(source:Araport11)
AT4G02895.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G53350.4	protein_coding		Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.	ROP interactive partner 4;(source:Araport11)
AT3G53350.5	protein_coding		Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.	ROP interactive partner 4;(source:Araport11)
AT5G38386.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT4G03090.5	protein_coding			sequence-specific DNA binding transcription factor ATNDX;(source:Araport11)
AT4G03090.4	protein_coding			sequence-specific DNA binding transcription factor ATNDX;(source:Araport11)
AT5G11020.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G17690.3	protein_coding		Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific  genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic  regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state.	like heterochromatin protein (LHP1);(source:Araport11)
AT3G10080.2	protein_coding			RmlC-like cupins superfamily protein;(source:Araport11)
AT3G53350.8	protein_coding		Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.	ROP interactive partner 4;(source:Araport11)
AT3G53350.9	protein_coding		Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.	ROP interactive partner 4;(source:Araport11)
AT1G34460.3	protein_coding		B1 type cyclin	CYCLIN B1;(source:Araport11)
AT5G57150.5	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G34460.5	protein_coding		B1 type cyclin	CYCLIN B1;(source:Araport11)
AT4G03185.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G30480.10	protein_coding			hypothetical protein;(source:Araport11)
AT1G34460.6	protein_coding		B1 type cyclin	CYCLIN B1;(source:Araport11)
AT1G34460.9	protein_coding		B1 type cyclin	CYCLIN B1;(source:Araport11)
AT2G44880.6	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT2G44880.5	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT2G01090.4	protein_coding			Ubiquinol-cytochrome C reductase hinge protein;(source:Araport11)
AT2G44880.3	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT2G44880.2	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G06033.1	small_nucleolar_rna			None;(source:Araport11)
AT1G04997.1	long_noncoding_rna			None;(source:Araport11)
AT1G06230.4	protein_coding		This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.	global transcription factor group E4;(source:Araport11)
AT2G22270.2	protein_coding			hematological/neurological-like protein;(source:Araport11)
AT1G65260.2	protein_coding		Encodes a protein required for thylakoid membrane formation.	plastid transcriptionally active 4;(source:Araport11)
AT3G06290.4	protein_coding		Encodes a component of the conserved TREX-2 complex that couples mRNA transcription with nucleo-cytoplasmic export, that is required for prevention of epigenetic gene silencing and has additional roles in regulating siRNAs and DNA methylation.	SAC3/GANP/Nin1/mts3/eIF-3 p25 family;(source:Araport11)
AT5G08605.1	long_noncoding_rna			None;(source:Araport11)
AT3G44960.2	protein_coding			shugoshin;(source:Araport11)
AT4G08630.2	protein_coding			fas-binding factor-like protein;(source:Araport11)
AT2G30780.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G00467.2	protein_coding			Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G27090.2	protein_coding			DCD (Development and Cell Death) domain protein;(source:Araport11)
AT3G27090.3	protein_coding			DCD (Development and Cell Death) domain protein;(source:Araport11)
AT5G45140.3	protein_coding		Encodes a subunit of RNA polymerase III (aka RNA polymerase C).	nuclear RNA polymerase C2;(source:Araport11)
AT5G00715.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G48130.6	protein_coding		Encodes a plasma membrane-localized glycosylphosphatidylinositol-anchored lipid transfer protein expressed in root endodermis and seed coats that is involved in very long chain fatty acid (and their derivatives) transport.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G48130.5	protein_coding		Encodes a plasma membrane-localized glycosylphosphatidylinositol-anchored lipid transfer protein expressed in root endodermis and seed coats that is involved in very long chain fatty acid (and their derivatives) transport.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G48130.4	protein_coding		Encodes a plasma membrane-localized glycosylphosphatidylinositol-anchored lipid transfer protein expressed in root endodermis and seed coats that is involved in very long chain fatty acid (and their derivatives) transport.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT2G48130.3	protein_coding		Encodes a plasma membrane-localized glycosylphosphatidylinositol-anchored lipid transfer protein expressed in root endodermis and seed coats that is involved in very long chain fatty acid (and their derivatives) transport.	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G05090.3	protein_coding		Encodes a DCAF protein.  Mutants are defective in lateral root development and suggest roles for DDB1?Cul4?mediated protein degradation in regulating auxin accumulation during lateral root primordium development and lateral root meristem emergence.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G08260.1	long_noncoding_rna			None;(source:Araport11)
AT3G14720.2	protein_coding		member of MAP KinaseThe mRNA is cell-to-cell mobile.	MAP kinase 19;(source:Araport11)
AT3G14720.3	protein_coding		member of MAP KinaseThe mRNA is cell-to-cell mobile.	MAP kinase 19;(source:Araport11)
AT3G06945.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, flower, pollen;(source:Araport11)
AT4G05730.1	long_noncoding_rna			None;(source:Araport11)
AT5G62850.2	protein_coding		Encodes a protein that is expressed in vegetative cells of pollen. A member of the SWEET sucrose efflux transporter family proteins.	Nodulin MtN3 family protein;(source:Araport11)
AT3G21280.2	protein_coding		Encodes a ubiquitin-specific protease.	ubiquitin carboxyl-terminal hydrolase;(source:Araport11)
AT1G09165.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G27325.3	protein_coding			hydrolases, acting on ester bond;(source:Araport11)
AT4G09725.1	long_noncoding_rna			None;(source:Araport11)
AT5G48775.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G48770;(source:Araport11)
AT5G18500.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G03645.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G63700.2	protein_coding			zinc ion binding / DNA binding protein;(source:Araport11)
AT5G20860.2	protein_coding			Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT5G18500.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G05740.2	protein_coding			RECQ helicase l1;(source:Araport11)
AT4G31230.2	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT4G38570.4	protein_coding			Putative CDP-diacylglycerol-inositol 3-phosphatidyltransferase 2;(source:Araport11)
AT5G43630.2	protein_coding		Encodes a zinc knuckle protein that negatively regulates morning specific growth. The role of TZP in hypocotyl elongation was established through a QTL analysis of BayXSha RIL populations. The Bay-0 allele contains a deletion causing a frameshift mutation. TZP is under circadian control and acts to regulate morning-specific hypocotyl growth.The mRNA is cell-to-cell mobile. Gene ontology analysis of common promoter targets suggests an active role in the transcriptional regulation of gene expression in response to environmental, biotic, abiotic, and endogenous stimuli. Promoter regions show a huge over-representation in proteins involved in transcription, clock, flowering, and light signaling components, reflecting its involvement in regulating gene expression in response to environmental stimuli such as light and temperature. Coassociates with and regulates the expression of light-regulated loci as well as transcriptional regulators to shape plant development in response to environmental stimuli. Requires, at least in part, ZFHD10 for function with regard to blue-light-regulated hypocotyl elongation.	zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT4G26510.3	protein_coding		One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 4;(source:Araport11)
AT3G52800.2	protein_coding			A20/AN1-like zinc finger family protein;(source:Araport11)
AT1G09187.1	long_noncoding_rna			None;(source:Araport11)
AT1G09465.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G03590.3	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G03590.2	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT4G31210.2	protein_coding			DNA topoisomerase, type IA, core;(source:Araport11)
AT4G31210.3	protein_coding			DNA topoisomerase, type IA, core;(source:Araport11)
AT1G03550.7	protein_coding			Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT4G06145.1	long_noncoding_rna			None;(source:Araport11)
AT1G04987.1	long_noncoding_rna			None;(source:Araport11)
AT3G08345.1	long_noncoding_rna			None;(source:Araport11)
AT2G32750.2	protein_coding			Exostosin family protein;(source:Araport11)
AT1G03030.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G01550.2	protein_coding			phosphoenolpyruvate (pep)/phosphate translocator 2;(source:Araport11)
AT3G05810.2	protein_coding			IGR motif protein;(source:Araport11)
AT2G18770.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G16530.3	protein_coding		Encodes  polyprenol reductase involved in N-gylcosylation. Mutants are defective in pollen development. Knockouts are embryo lethal	3-oxo-5-alpha-steroid 4-dehydrogenase family protein;(source:Araport11)
AT2G16530.4	protein_coding		Encodes  polyprenol reductase involved in N-gylcosylation. Mutants are defective in pollen development. Knockouts are embryo lethal	3-oxo-5-alpha-steroid 4-dehydrogenase family protein;(source:Araport11)
AT2G16530.5	protein_coding		Encodes  polyprenol reductase involved in N-gylcosylation. Mutants are defective in pollen development. Knockouts are embryo lethal	3-oxo-5-alpha-steroid 4-dehydrogenase family protein;(source:Araport11)
AT4G25520.2	protein_coding			SEUSS-like 1;(source:Araport11)
AT5G51700.2	protein_coding		Encodes a resistance signalling protein with two zinc binding (CHORD) domains that are highly conserved across eukaryotic phyla.  Mutant has reduced RPS5 and RPM1 mediated resistance. Potentially involved in transduction of R gene mediated disease resistance. Required for R protein accumulation.	cysteine and histidine-rich domain-containing protein RAR1;(source:Araport11)
AT3G14080.3	protein_coding			Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT1G06733.1	long_noncoding_rna			None;(source:Araport11)
AT4G23130.3	protein_coding		Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	cysteine-rich RLK (RECEPTOR-like protein kinase) 5;(source:Araport11)
AT3G14080.4	protein_coding			Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT1G04593.1	long_noncoding_rna			None;(source:Araport11)
AT1G08230.3	protein_coding		Codes for a H+-driven, high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta, AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G65580.2	protein_coding			Endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT3G19290.5	protein_coding		bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediates ABA-dependent stress responses.ABF4 acts through SnRK2 pathway and binds to ABA response elements of the promoters of NYE1 and regulates their expression to promote chlorophyll degradation.	ABRE binding factor 4;(source:Araport11)
AT3G19290.4	protein_coding		bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediates ABA-dependent stress responses.ABF4 acts through SnRK2 pathway and binds to ABA response elements of the promoters of NYE1 and regulates their expression to promote chlorophyll degradation.	ABRE binding factor 4;(source:Araport11)
AT1G22570.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G00600.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G07950.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G23740;(source:Araport11)
AT1G11880.2	protein_coding			transferases, transferring hexosyl groups;(source:Araport11)
AT1G11880.3	protein_coding			transferases, transferring hexosyl groups;(source:Araport11)
AT4G08355.1	long_noncoding_rna			None;(source:Araport11)
AT5G20490.3	protein_coding		Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. Required for fast root hair growth. This gene appears to be expressed at low levels throughout the plant.	myosin family protein with Dil;(source:Araport11)
AT1G71030.2	protein_coding		Encodes a putative myb family transcription factor.  In contrast to most other myb-like proteins its myb domain consists of a single repeat.  A proline-rich region potentially involved in transactivation is found in the C-terminal part of the protein.   Its transcript accumulates mainly in leaves.	MYB-like 2;(source:Araport11)
AT1G13825.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G13825.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G17360.3	protein_coding		encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.	Formyl transferase;(source:Araport11)
AT2G16860.2	protein_coding			GCIP-interacting family protein;(source:Araport11)
AT3G06835.1	long_noncoding_rna			None;(source:Araport11)
AT2G09385.1	long_noncoding_rna			None;(source:Araport11)
AT5G10150.3	protein_coding		SOK2 is a DUF966 domain containing protein of unknown function. Expressed in discrete domains of the PM. In root endodermis and embryo, expression is in inner basal edges  and in basal	UPSTREAM OF FLC protein (DUF966);(source:Araport11)
AT5G00620.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G06425.1	protein_coding			PttA/En/Spm family plant transposase;(source:Araport11)
AT3G29630.2	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G15765.2	protein_coding			FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT3G09625.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G61350;(source:Araport11)
AT4G19110.uORF1	uORF			Derives_from AT4G19110;(source:Araport11)
AT1G61420.4	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT5G27240.2	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT2G00890.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G01050.4	protein_coding			membrane-anchored ubiquitin-fold protein 1 precursor;(source:Araport11)
AT2G00640.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G56730.4	protein_coding			Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT5G09005.1	small_nucleolar_rna			None;(source:Araport11)
AT5G45940.3	protein_coding		Encodes a CoA pyrophosphatase, also has ppGpp pyrophosphohydrolase and exhibits minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl, flower, and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette.	nudix hydrolase homolog 11;(source:Araport11)
AT3G56140.3	protein_coding			DUF399 family protein, putative (DUF399 and DUF3411);(source:Araport11)
AT3G31925.1	protein_coding			replication protein A 70 kDa DNA-binding subunit B-like protein;(source:Araport11)
AT2G18100.4	protein_coding			transmembrane/coiled-coil protein (DUF726);(source:Araport11)
AT3G05375.1	long_noncoding_rna			None;(source:Araport11)
AT2G37760.6	protein_coding		Encodes an NADPH-dependent aldo-keto reductase that can act on a wide variety of substrates in vitro including aliphatic and aromatic aldehydes and steroids. Transcript levels for this gene are up-regulated in response to cold, salt, and drought stress.	NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT5G59660.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G15635.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G09570.3	protein_coding		Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism.  Requires FHY1 for nuclear accumulation.	phytochrome A;(source:Araport11)
AT3G15120.2	protein_coding		Encodes BRP1, an ATPase domain-containing protein that interacts with BRAT1 to negatively regulate transcriptional silencing at methylated genomic regions.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G37760.7	protein_coding		Encodes an NADPH-dependent aldo-keto reductase that can act on a wide variety of substrates in vitro including aliphatic and aromatic aldehydes and steroids. Transcript levels for this gene are up-regulated in response to cold, salt, and drought stress.	NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT3G01050.5	protein_coding			membrane-anchored ubiquitin-fold protein 1 precursor;(source:Araport11)
AT1G09570.6	protein_coding		Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism.  Requires FHY1 for nuclear accumulation.	phytochrome A;(source:Araport11)
AT4G05665.1	long_noncoding_rna			None;(source:Araport11)
AT1G09570.4	protein_coding		Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism.  Requires FHY1 for nuclear accumulation.	phytochrome A;(source:Araport11)
AT2G13800.3	protein_coding			somatic embryogenesis receptor-like kinase 5;(source:Araport11)
AT2G13800.2	protein_coding			somatic embryogenesis receptor-like kinase 5;(source:Araport11)
AT5G54590.4	protein_coding		Splice variant At5g54590.2 encodes CRLK1 (440-amino acid in length) calcium/calmodulin-regulated receptor-like kinase crucial for cold tolerance. CRLK1 is Primarily localized in the plasma membrane.	Protein kinase superfamily protein;(source:Araport11)
AT5G54590.3	protein_coding		Splice variant At5g54590.2 encodes CRLK1 (440-amino acid in length) calcium/calmodulin-regulated receptor-like kinase crucial for cold tolerance. CRLK1 is Primarily localized in the plasma membrane.	Protein kinase superfamily protein;(source:Araport11)
AT2G42835.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42830;(source:Araport11)
AT2G31510.3	protein_coding			IBR domain-containing protein;(source:Araport11)
AT2G31510.2	protein_coding			IBR domain-containing protein;(source:Araport11)
AT2G41190.2	protein_coding			Transmembrane amino acid transporter family protein;(source:Araport11)
AT5G23700.2	protein_coding			coiled-coil protein;(source:Araport11)
AT5G23700.3	protein_coding			coiled-coil protein;(source:Araport11)
AT2G04555.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G03690;(source:Araport11)
AT3G02030.2	protein_coding			transferase;(source:Araport11)
AT4G35490.2	protein_coding			mitochondrial ribosomal protein L11;(source:Araport11)
AT5G16470.2	protein_coding			zinc finger (C2H2 type) family protein;(source:Araport11)
AT2G26510.3	protein_coding		Encodes a plasma-membrane localized nucleobase transporter capable of transporting adenine, guanine, uracil and hypoxanthine. Likely to be a proton-nucleobase symporter.	Xanthine/uracil permease family protein;(source:Araport11)
AT3G01445.1	long_noncoding_rna			None;(source:Araport11)
AT3G28080.7	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G03995.1	small_nuclear_rna			U2;(source:Araport11)
AT4G01335.2	protein_coding			TATA box-binding protein associated factor RNA polymerase I subunit B-like protein;(source:Araport11)
AT2G04655.1	long_noncoding_rna			None;(source:Araport11)
AT4G09905.1	long_noncoding_rna			None;(source:Araport11)
AT5G50780.2	protein_coding		MORC4 is a member of a family of  GHKL ATPases. It is localized in the nuceloplasm and adjacent to chromocenters. Along with MORC7, it appears to repress the expression	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein;(source:Araport11)
AT5G50780.3	protein_coding		MORC4 is a member of a family of  GHKL ATPases. It is localized in the nuceloplasm and adjacent to chromocenters. Along with MORC7, it appears to repress the expression	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein;(source:Araport11)
AT5G50010.uORF1	uORF			Derives_from AT5G50010;(source:Araport11)
AT1G62860.3	pseudogene		pseudogene of pentatricopeptide (PPR) repeat-containing protein	pseudogene of Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G54870.2	protein_coding		Armadillo-repeat containing  kinesin-related protein. Plays a role during transition to root-hair tip growth.Mutants have short, branched root hairs and an excess of endoplasmic microtubles. Phenotype suggests ARK1 plays a role in modulating microtubule depolymerization during root hair tip growth.An HKT2.4 (CS76404) - ARK1 variant causes root hair branching.	Armadillo/beta-catenin repeat family protein / kinesin motor family protein;(source:Araport11)
AT3G54870.3	protein_coding		Armadillo-repeat containing  kinesin-related protein. Plays a role during transition to root-hair tip growth.Mutants have short, branched root hairs and an excess of endoplasmic microtubles. Phenotype suggests ARK1 plays a role in modulating microtubule depolymerization during root hair tip growth.An HKT2.4 (CS76404) - ARK1 variant causes root hair branching.	Armadillo/beta-catenin repeat family protein / kinesin motor family protein;(source:Araport11)
AT2G40630.3	protein_coding			Uncharacterized conserved protein (UCP030365);(source:Araport11)
AT4G08535.1	protein_coding			F-box SKIP17-like protein;(source:Araport11)
AT1G06623.1	miRNA_primary_transcript			microRNA ath-MIR2933a precursor;(source:Araport11)
AT4G02110.2	protein_coding			transcription coactivator;(source:Araport11)
AT3G08605.1	small_nuclear_rna			U5;(source:Araport11)
AT5G46190.3	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT2G00640.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G06070.1	long_noncoding_rna			None;(source:Araport11)
AT3G56860.11	protein_coding		encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3 Prime-UTRs and contributing to the stabilization of mRNAs in the nucleus.	UBP1-associated protein 2A;(source:Araport11)
AT5G60590.3	protein_coding			DHBP synthase RibB-like alpha/beta domain-containing protein;(source:Araport11)
AT5G40530.4	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G06715.1	long_noncoding_rna			None;(source:Araport11)
AT2G17990.2	protein_coding		Calcium-dependent protein kinase 1 adaptor protein involved in vacuolar transport and lytic vacuole biogenesis.	polyamine-modulated factor 1-binding protein;(source:Araport11)
AT3G52510.2	protein_coding			F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G04545.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G03680;(source:Araport11)
AT5G41610.3	protein_coding		member of Putative Na+/H+ antiporter family	cation/H+ exchanger 18;(source:Araport11)
AT1G06587.1	long_noncoding_rna			None;(source:Araport11)
AT1G05383.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G18100;(source:Araport11)
AT1G60850.4	protein_coding			DNA-directed RNA polymerase family protein;(source:Araport11)
AT2G37290.3	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT5G05920.3	protein_coding		Encodes a deoxyhypusine synthase.	deoxyhypusine synthase;(source:Araport11)
AT3G07515.1	miRNA_primary_transcript			microRNA ath-MIR5651 precursor;(source:Araport11)
AT1G08813.1	miRNA_primary_transcript			microRNA ath-MIR5014b precursor;(source:Araport11)
AT1G01520.3	protein_coding		RVE3 is one of eleven homologous MYB-like transcription factors in Arabidopsis and a member of the RVE8 clade. Plays a minor role in clock regulation.	Homeodomain-like superfamily protein;(source:Araport11)
AT4G26800.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G19085.2	protein_coding			F-box/RNI/FBD-like domain protein;(source:Araport11)
AT1G11710.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G09687.1	miRNA_primary_transcript			microRNA ath-MIR4228 precursor;(source:Araport11)
AT3G25013.6	protein_coding			Synaptobrevin family protein;(source:Araport11)
AT4G36050.3	protein_coding		Encodes a base excision repair protein with 3'-phosphatase activity and strong 3'-5' exonuclease activity. Together with ZDP, it plays overlapping roles in the maintenance of epigenome and genome stability in plants.	endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT5G60265.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G60670.5	protein_coding			hypothetical protein (DUF3755);(source:Araport11)
AT3G06630.2	protein_coding			protein kinase family protein;(source:Araport11)
AT4G36050.5	protein_coding		Encodes a base excision repair protein with 3'-phosphatase activity and strong 3'-5' exonuclease activity. Together with ZDP, it plays overlapping roles in the maintenance of epigenome and genome stability in plants.	endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT4G36050.4	protein_coding		Encodes a base excision repair protein with 3'-phosphatase activity and strong 3'-5' exonuclease activity. Together with ZDP, it plays overlapping roles in the maintenance of epigenome and genome stability in plants.	endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT2G32300.2	protein_coding		Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods.	uclacyanin 1;(source:Araport11)
AT4G09135.1	small_nuclear_rna			U6;(source:Araport11)
AT4G04075.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G02200;(source:Araport11)
AT2G41880.2	protein_coding		Guanylate kinase. Involved in nucleotide metabolism.	guanylate kinase 1;(source:Araport11)
AT2G41880.3	protein_coding		Guanylate kinase. Involved in nucleotide metabolism.	guanylate kinase 1;(source:Araport11)
AT2G41880.4	protein_coding		Guanylate kinase. Involved in nucleotide metabolism.	guanylate kinase 1;(source:Araport11)
AT2G41880.5	protein_coding		Guanylate kinase. Involved in nucleotide metabolism.	guanylate kinase 1;(source:Araport11)
AT2G41880.6	protein_coding		Guanylate kinase. Involved in nucleotide metabolism.	guanylate kinase 1;(source:Araport11)
AT2G41880.7	protein_coding		Guanylate kinase. Involved in nucleotide metabolism.	guanylate kinase 1;(source:Araport11)
AT2G41880.8	protein_coding		Guanylate kinase. Involved in nucleotide metabolism.	guanylate kinase 1;(source:Araport11)
AT2G41880.9	protein_coding		Guanylate kinase. Involved in nucleotide metabolism.	guanylate kinase 1;(source:Araport11)
AT5G11150.2	protein_coding		Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.	vesicle-associated membrane protein 713;(source:Araport11)
AT4G10430.6	protein_coding			TMPIT-like protein;(source:Araport11)
AT5G05455.1	long_noncoding_rna			None;(source:Araport11)
AT2G18540.2	protein_coding			RmlC-like cupins superfamily protein;(source:Araport11)
AT3G56300.3	protein_coding			Cysteinyl-tRNA synthetase, class Ia family protein;(source:Araport11)
AT4G10430.9	protein_coding			TMPIT-like protein;(source:Araport11)
AT1G08793.1	miRNA_primary_transcript			microRNA ath-MIR5014a precursor;(source:Araport11)
AT5G00705.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G61300.2	protein_coding			LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT1G08097.1	long_noncoding_rna			None;(source:Araport11)
AT1G08765.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G50240.4	protein_coding		Encodes a kinesin-related protein.	ATP binding microtubule motor family protein;(source:Araport11)
AT5G61190.7	protein_coding			putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein;(source:Araport11)
AT5G61190.6	protein_coding			putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein;(source:Araport11)
AT1G63860.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G21810.2	protein_coding		Encodes a protein that localizes at motile vesicle-like small compartments in differentiating xylem cells that is associated with microtubule plus-ends.  VETH-positive compartments are unlikely to be elements in conventional endomembrane trafficking pathways.  It can associate with COG2, and together these two proteins co-localize with the EXO70A1 exocyst subunit, tethering EXO70A1 to compartments associated with cortical microtubules.	filament-like protein (DUF869);(source:Araport11)
AT1G63860.5	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G63860.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G45650.2	protein_coding		Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1).  Localized to the plasma membrane.  NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots.	nitrate excretion transporter1;(source:Araport11)
AT1G63860.6	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G56860.6	protein_coding		encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3 Prime-UTRs and contributing to the stabilization of mRNAs in the nucleus.	UBP1-associated protein 2A;(source:Araport11)
AT5G08025.1	small_nuclear_rna			U5;(source:Araport11)
AT2G39830.2	protein_coding		Essential for early phloem development and function, and for root system development.DAR2 is a member of a small (7 member) ubiquitin binding protein family. It appears to play a role in regulation of endoreduplication in leaf epidermal tissue.	DA1-related protein 2;(source:Araport11)
AT1G03457.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G55050.uORF1	uORF			Derives_from AT3G55050;(source:Araport11)
AT5G62165.8	protein_coding		Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT5G35180.5	protein_coding			ENHANCED DISEASE RESISTANCE protein (DUF1336);(source:Araport11)
AT4G21490.2	protein_coding			NAD(P)H dehydrogenase B3;(source:Araport11)
AT5G62165.9	protein_coding		Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT3G08195.1	novel_transcribed_region			novel transcribed region; detected in light-grown seedling, flower, pollen;(source:Araport11)
AT3G59630.2	protein_coding			diphthamide synthesis DPH2 family protein;(source:Araport11)
AT3G10810.2	protein_coding			zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT2G00560.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03325.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G61970.3	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT3G05040.2	protein_coding		Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species.	ARM repeat superfamily protein;(source:Araport11)
AT1G61970.5	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G61970.4	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G61970.7	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G61970.6	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G05073.1	long_noncoding_rna			None;(source:Araport11)
AT4G04805.1	long_noncoding_rna			None;(source:Araport11)
AT1G01020.3	protein_coding			ARV1 family protein;(source:Araport11)
AT1G01020.5	protein_coding			ARV1 family protein;(source:Araport11)
AT5G08835.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G58540;(source:Araport11)
AT1G01020.6	protein_coding			ARV1 family protein;(source:Araport11)
AT5G11840.4	protein_coding			YCF36, putative (DUF1230);(source:Araport11)
AT1G06670.2	protein_coding		nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteinsThe mRNA is cell-to-cell mobile.	nuclear DEIH-boxhelicase;(source:Araport11)
AT2G45300.3	protein_coding		encodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesisThe mRNA is cell-to-cell mobile.	RNA 3-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta;(source:Araport11)
AT2G33490.4	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G33490.2	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G33490.3	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G77000.3	protein_coding		AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1.  Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain.  Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis.  AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. AtSKP2b may also be involved in the degradation of KRP1/ICK1, a CDK inhibitor.	RNI-like superfamily protein;(source:Araport11)
AT5G06120.10	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT5G11840.2	protein_coding			YCF36, putative (DUF1230);(source:Araport11)
AT5G43160.2	protein_coding			QWRF motif protein (DUF566);(source:Araport11)
AT5G40840.4	protein_coding		Cohesion family protein SYN2 (SYN2). Plays a role in somatic DNA double strand break damage repair.	Rad21/Rec8-like family protein;(source:Araport11)
AT5G40840.5	protein_coding		Cohesion family protein SYN2 (SYN2). Plays a role in somatic DNA double strand break damage repair.	Rad21/Rec8-like family protein;(source:Araport11)
AT5G40840.6	protein_coding		Cohesion family protein SYN2 (SYN2). Plays a role in somatic DNA double strand break damage repair.	Rad21/Rec8-like family protein;(source:Araport11)
AT5G00540.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G34150.3	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT3G58270.3	protein_coding			phospholipase-like protein (PEARLI 4) with TRAF-like domain protein;(source:Araport11)
AT2G07631.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G08055.1	antisense_rna			Natural antisense transcript overlaps with AT4G29130;(source:Araport11)
AT5G04880.5	pseudogene		pseudogene of ABC transporter family protein	pseudogene of calcium dependent protein kinase 1;(source:Araport11)
AT5G13590.6	protein_coding			hypothetical protein;(source:Araport11)
AT4G15210.3	protein_coding		cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.	beta-amylase 5;(source:Araport11)
AT5G13590.4	protein_coding			hypothetical protein;(source:Araport11)
AT5G13590.5	protein_coding			hypothetical protein;(source:Araport11)
AT5G13590.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G13590.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G15210.4	protein_coding		cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.	beta-amylase 5;(source:Araport11)
AT1G54730.9	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G54730.8	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G14270.3	protein_coding		Bromodomain protein that functions as a negative regulator of sugar and ABA signaling.	bromodomain and extraterminal domain protein 9;(source:Araport11)
AT2G37160.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G16489.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G16490;(source:Araport11)
AT1G16489.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G16490;(source:Araport11)
AT5G06035.1	long_noncoding_rna			None;(source:Araport11)
AT1G54730.7	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G54730.6	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G16489.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G16490;(source:Araport11)
AT1G54730.4	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT4G34310.6	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G34310.7	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G15230.2	protein_coding			pleiotropic drug resistance 2;(source:Araport11)
AT4G34310.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G15230.4	protein_coding			pleiotropic drug resistance 2;(source:Araport11)
AT4G34310.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G27470.4	protein_coding			lysine ketoglutarate reductase trans-splicing protein (DUF707);(source:Araport11)
AT3G27470.5	protein_coding			lysine ketoglutarate reductase trans-splicing protein (DUF707);(source:Araport11)
AT5G37450.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G09935.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G47560;(source:Araport11)
AT1G27770.3	protein_coding		Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.	autoinhibited Ca2+-ATPase 1;(source:Araport11)
AT4G34310.8	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G34310.9	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G04835.1	novel_transcribed_region			novel transcribed region; detected in leaf, flower;(source:Araport11)
AT5G05135.1	long_noncoding_rna			None;(source:Araport11)
AT2G37160.4	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G70620.9	protein_coding			cyclin-like protein;(source:Araport11)
AT1G70620.8	protein_coding			cyclin-like protein;(source:Araport11)
AT1G70620.7	protein_coding			cyclin-like protein;(source:Araport11)
AT1G70620.6	protein_coding			cyclin-like protein;(source:Araport11)
AT1G70620.5	protein_coding			cyclin-like protein;(source:Araport11)
AT1G70620.4	protein_coding			cyclin-like protein;(source:Araport11)
AT1G21580.2	protein_coding		Encodes a zinc-finger protein that co-localizes with the exosome-associated RNA helicase HEN2 and functions as a co-factor of nuclear RNA quality control by the nucleoplasmic exosome.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT2G06085.1	long_noncoding_rna			None;(source:Araport11)
AT2G35880.2	protein_coding			TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT5G24540.2	protein_coding			beta glucosidase 31;(source:Araport11)
AT3G46590.4	protein_coding		Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers.	TRF-like 1;(source:Araport11)
AT3G46590.5	protein_coding		Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers.	TRF-like 1;(source:Araport11)
AT5G08725.1	long_noncoding_rna			None;(source:Araport11)
AT2G03965.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53870.4	protein_coding			LURP-one-like protein (DUF567);(source:Araport11)
AT3G12833.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G00620.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00620.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G05283.1	long_noncoding_rna			None;(source:Araport11)
AT3G51270.3	protein_coding			protein serine/threonine kinase;(source:Araport11)
AT1G58400.3	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G58400.2	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT3G01610.2	protein_coding		AAA-type ATPase - Over 90% homologous to CDC48a	cell division cycle 48C;(source:Araport11)
AT3G03925.1	long_noncoding_rna			None;(source:Araport11)
AT4G34265.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G42170.2	protein_coding		transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner.	BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER;(source:Araport11)
AT5G64700.2	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G30820.4	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30820.5	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G34265.5	protein_coding			hypothetical protein;(source:Araport11)
AT4G30820.7	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30820.8	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT5G08800.1	miRNA_primary_transcript			microRNA ath-MIR8167e precursor;(source:Araport11)
AT2G39110.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G29760.5	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G04145.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G01870;(source:Araport11)
AT1G08227.1	long_noncoding_rna			None;(source:Araport11)
AT1G05160.2	protein_coding		Encodes an ent-kaurenoic acid hydroxylase, a  member of the CYP88A cytochrome p450 family.	cytochrome P450, family 88, subfamily A, polypeptide 3;(source:Araport11)
AT3G11530.3	protein_coding			Vacuolar protein sorting 55 (VPS55) family protein;(source:Araport11)
AT3G14660.2	protein_coding		putative cytochrome P450The mRNA is cell-to-cell mobile.	cytochrome P450, family 72, subfamily A, polypeptide 13;(source:Araport11)
AT1G20640.3	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT5G49800.2	protein_coding			Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT2G22620.3	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT4G19670.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G19670.6	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G09203.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, leaf, dark-grown seedling;(source:Araport11)
AT2G22620.5	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT2G22620.4	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT1G06977.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G36390;(source:Araport11)
AT4G21410.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 29;(source:Araport11)
AT1G04343.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G05200;(source:Araport11)
AT5G57390.2	protein_coding		Encodes a member of the AP2 family of transcriptional regulators. May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.essential for the developmental  transition between the embryonic and vegetative  phases in plants. Overexpression results in the formation of somatic embryos on cotyledons. It is also required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions. Acts redundantly with PLT3 and 7 in lateral root pattern formation.	AINTEGUMENTA-like 5;(source:Araport11)
AT5G45472.2	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT5G45470	None;(source:Araport11)
AT5G45472.3	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT5G45470	None;(source:Araport11)
AT5G45472.4	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT5G45470	None;(source:Araport11)
AT5G45472.5	antisense_long_noncoding_rna		Potential natural antisense gene, locus overlaps with AT5G45470	None;(source:Araport11)
AT2G31730.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G20815.3	protein_coding			QWRF motif protein (DUF566);(source:Araport11)
AT5G62910.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G67480.3	protein_coding		BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.	BTB and TAZ domain protein 4;(source:Araport11)
AT2G20815.4	protein_coding			QWRF motif protein (DUF566);(source:Araport11)
AT4G00830.6	protein_coding		Encodes a heterogeneous nuclear ribonucleoprotein (hnRNP-Q) that is involved in the plant innate immune response and may function as a suppressor of cell-autonomous immunity.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G43020.uORF1	uORF			Derives_from AT2G43020;(source:Araport11)
AT1G20890.2	protein_coding			caveolin-1 protein;(source:Araport11)
AT1G29120.8	protein_coding			Hydrolase-like protein family;(source:Araport11)
AT1G29120.6	protein_coding			Hydrolase-like protein family;(source:Araport11)
AT1G29120.7	protein_coding			Hydrolase-like protein family;(source:Araport11)
AT1G03993.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G01040;(source:Araport11)
AT2G28150.3	protein_coding		DUF966 domain containing protein, expressed during embryogenesis.	UPSTREAM OF FLC protein (DUF966);(source:Araport11)
AT3G05520.3	protein_coding		Encodes a capping protein that acts as a phosphatidic acid biosensor and key transducer of fluxes in membrane signaling phospholipids into changes in actin cytoskeleton dynamics.	Subunits of heterodimeric actin filament capping protein Capz superfamily;(source:Araport11)
AT3G04240.2	protein_coding		Has O-linked N-acetyl glucosamine transferase activity. Similar to Arabidopsis SPY gene.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G09213.1	miRNA_primary_transcript			microRNA ath-MIR858b precursor;(source:Araport11)
AT1G05563.1	small_nucleolar_rna			None;(source:Araport11)
AT4G03685.1	antisense_rna			Natural antisense transcript overlaps with AT4G00651;(source:Araport11)
AT5G51260.2	protein_coding			HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT1G09105.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G21270.4	protein_coding			ubiquitin fusion degradation 1;(source:Araport11)
AT1G72450.2	protein_coding		JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus.  Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.	jasmonate-zim-domain protein 6;(source:Araport11)
AT1G13000.4	protein_coding			transmembrane protein, putative (DUF707);(source:Araport11)
AT1G13000.5	protein_coding			transmembrane protein, putative (DUF707);(source:Araport11)
AT2G46480.2	protein_coding		Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase-like protein;(source:Araport11)
AT3G07995.1	long_noncoding_rna			None;(source:Araport11)
AT1G13000.3	protein_coding			transmembrane protein, putative (DUF707);(source:Araport11)
AT3G05055.1	long_noncoding_rna			None;(source:Araport11)
AT5G46490.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G01545.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G08280;(source:Araport11)
AT1G07533.1	long_noncoding_rna			None;(source:Araport11)
AT5G09165.1	long_noncoding_rna			None;(source:Araport11)
AT1G13060.3	protein_coding		Encodes 20S proteasome beta subunit PBE1 (PBE1).	20S proteasome beta subunit E1;(source:Araport11)
AT1G70680.2	protein_coding			Caleosin-related family protein;(source:Araport11)
AT3G08085.1	antisense_rna			Natural antisense transcript overlaps with AT3G49900;(source:Araport11)
AT5G54570.3	protein_coding			beta glucosidase 41;(source:Araport11)
AT3G55630.6	protein_coding		Encodes one of the three folylpolyglutamate synthetase isoforms (FPGSs): FPGS1 (At5g05980, plastidic), FPGS2 (At3g10160, mitochondrial) and FPGS3 (At3g55630, cytosolic).	DHFS-FPGS homolog D;(source:Araport11)
AT3G55630.5	protein_coding		Encodes one of the three folylpolyglutamate synthetase isoforms (FPGSs): FPGS1 (At5g05980, plastidic), FPGS2 (At3g10160, mitochondrial) and FPGS3 (At3g55630, cytosolic).	DHFS-FPGS homolog D;(source:Araport11)
AT2G08475.1	antisense_rna			Natural antisense transcript overlaps with AT2G31880;(source:Araport11)
AT4G05895.1	long_noncoding_rna			None;(source:Araport11)
AT3G05075.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G26680;(source:Araport11)
AT3G13190.4	protein_coding			WEB family protein (DUF827);(source:Araport11)
AT4G16860.2	protein_coding		Confers resistance to Peronospora parasitica.  RPP4 is coordinately regulated by transcriptional activation and RNA silencing.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G55630.4	protein_coding		Encodes one of the three folylpolyglutamate synthetase isoforms (FPGSs): FPGS1 (At5g05980, plastidic), FPGS2 (At3g10160, mitochondrial) and FPGS3 (At3g55630, cytosolic).	DHFS-FPGS homolog D;(source:Araport11)
AT2G27990.2	protein_coding		Encodes a BEL1-like homeobox gene that functions together with PNY in meristem maintenance by regulating the allocation process during vegetative and reproductive development. Both gene products are required for the competence of the SAM to respond properly to floral inductive signals.	BEL1-like homeodomain 8;(source:Araport11)
AT1G06150.uORF1	uORF			Derives_from AT1G06150;(source:Araport11)
AT5G65130.2	protein_coding		encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G20080.4	protein_coding		Encodes a synaptotagmin localized on the Golgi apparatus and that regulates   protein secretion via the unconventional protein transport from the cytosol to the extracellular matrix in plant cells.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G20080.5	protein_coding		Encodes a synaptotagmin localized on the Golgi apparatus and that regulates   protein secretion via the unconventional protein transport from the cytosol to the extracellular matrix in plant cells.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G20080.2	protein_coding		Encodes a synaptotagmin localized on the Golgi apparatus and that regulates   protein secretion via the unconventional protein transport from the cytosol to the extracellular matrix in plant cells.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G20080.3	protein_coding		Encodes a synaptotagmin localized on the Golgi apparatus and that regulates   protein secretion via the unconventional protein transport from the cytosol to the extracellular matrix in plant cells.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT2G20625.2	protein_coding			hypothetical protein (DUF626);(source:Araport11)
AT5G47650.4	protein_coding		Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress.	nudix hydrolase homolog 2;(source:Araport11)
AT5G47650.5	protein_coding		Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress.	nudix hydrolase homolog 2;(source:Araport11)
AT5G01395.1	long_noncoding_rna			None;(source:Araport11)
AT4G34880.2	protein_coding			Amidase family protein;(source:Araport11)
AT5G47650.2	protein_coding		Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress.	nudix hydrolase homolog 2;(source:Araport11)
AT5G47650.3	protein_coding		Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress.	nudix hydrolase homolog 2;(source:Araport11)
AT2G38710.3	protein_coding			AMMECR1 family;(source:Araport11)
AT4G30820.13	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT3G29760.2	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G77770.3	protein_coding			forkhead box protein, putative (DUF1644);(source:Araport11)
AT2G08860.1	small_nucleolar_rna			None;(source:Araport11)
AT4G05785.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G10480;(source:Araport11)
AT4G30820.14	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30820.15	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT1G15290.2	protein_coding		Encodes REDUCED CHLOROPLAST COVERAGE 3 (REC3).  Contributes to establishing the size of the chloroplast compartment.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G30820.18	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT5G04305.1	small_nuclear_rna			U4;(source:Araport11)
AT2G02525.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G02670.2	protein_coding			indeterminate(ID)-domain 12;(source:Araport11)
AT1G20515.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G20520;(source:Araport11)
AT5G53440.2	protein_coding			LOW protein: zinc finger CCCH domain protein;(source:Araport11)
AT5G37370.7	protein_coding		encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	PRP38 family protein;(source:Araport11)
AT3G14570.3	protein_coding		encodes a protein similar to callose synthase	glucan synthase-like 4;(source:Araport11)
AT4G09575.1	long_noncoding_rna			None;(source:Araport11)
AT1G06283.1	small_nucleolar_rna			None;(source:Araport11)
AT3G06520.2	protein_coding			agenet domain-containing protein;(source:Araport11)
AT3G06530.5	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT2G09085.1	long_noncoding_rna			None;(source:Araport11)
AT5G00475.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G80490.3	protein_coding			TOPLESS-related 1;(source:Araport11)
AT4G31570.4	protein_coding			nucleoporin;(source:Araport11)
AT3G28956.2	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT3G28956.3	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT3G28956.4	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT3G28956.5	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT3G28956.6	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT3G28956.7	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT3G28956.8	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT3G28956.9	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT5G08810.1	small_nuclear_rna			U2;(source:Araport11)
AT1G63010.6	protein_coding		Encodes an SPX domain protein that transports Pi into the vacuole and is essential for phosphate homeostasis.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT1G63010.7	protein_coding		Encodes an SPX domain protein that transports Pi into the vacuole and is essential for phosphate homeostasis.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT4G05425.1	long_noncoding_rna			None;(source:Araport11)
AT5G14020.2	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT2G33205.7	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT5G38510.3	protein_coding			Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT4G06705.1	small_nucleolar_rna			None;(source:Araport11)
AT1G68010.3	protein_coding		Encodes hydroxypyruvate reductase.	hydroxypyruvate reductase;(source:Araport11)
AT4G20320.3	protein_coding		Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT5G37370.8	protein_coding		encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	PRP38 family protein;(source:Araport11)
AT4G37830.3	protein_coding			cytochrome c oxidase-like protein;(source:Araport11)
AT5G37370.9	protein_coding		encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	PRP38 family protein;(source:Araport11)
AT2G45380.3	protein_coding			myeloid leukemia factor;(source:Araport11)
AT2G45380.4	protein_coding			myeloid leukemia factor;(source:Araport11)
AT4G13560.2	protein_coding			Late embryogenesis abundant protein (LEA) family protein;(source:Araport11)
AT4G13505.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G13510;(source:Araport11)
AT4G03390.2	protein_coding			STRUBBELIG-receptor family 3;(source:Araport11)
AT4G21400.5	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 28;(source:Araport11)
AT2G06765.1	long_noncoding_rna			None;(source:Araport11)
AT3G19960.5	protein_coding		member of Myosin-like proteins	myosin 1;(source:Araport11)
AT3G19960.4	protein_coding		member of Myosin-like proteins	myosin 1;(source:Araport11)
AT3G09205.1	long_noncoding_rna			None;(source:Araport11)
AT1G48030.4	protein_coding		Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light.	mitochondrial lipoamide dehydrogenase 1;(source:Araport11)
AT5G42445.2	pseudogene			pseudogene of R-protein L3 B;(source:Araport11)
AT4G31820.2	protein_coding		A member of the NPY family genes (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590).  Encodes a protein with similarity to NHP3. Contains BTB/POZ domain. Promoter region has  canonical auxin response element binding site and Wus binding site. Co-localizes to the late endosome with PID. Regulates cotyledon development through control of PIN1 polarity in concert with PID. Also involved in sepal and gynoecia development.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT4G05690.1	antisense_rna			Natural antisense transcript overlaps with AT4G09010;(source:Araport11)
AT3G17330.3	protein_coding			evolutionarily conserved C-terminal region 6;(source:Araport11)
AT2G04650.2	protein_coding		KONJAC2 is imilar to sugar pyrophosphorylases but has an insertion of 2 AA in the pyrophosphorylase consensus motif that is highly conserved in GMPPs. KONJAC2 does not display GDP-mannose pyrophosphorylase activity. It can simulate GDP-mannose pyrophosphorylase activity of VTC1.	ADP-glucose pyrophosphorylase family protein;(source:Araport11)
AT4G03605.1	other_rna			None;(source:Araport11)
AT5G18980.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT5G18980.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT5G11610.3	protein_coding			Exostosin family protein;(source:Araport11)
AT5G18705.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G63710.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G07613.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G74630.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G01115.1	long_noncoding_rna			None;(source:Araport11)
AT2G09320.1	long_noncoding_rna			None;(source:Araport11)
AT5G43100.2	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G28100.2	protein_coding		nodulin MtN21-like transporter family proteinThe mRNA is cell-to-cell mobile.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G21515.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G20750.2	protein_coding		member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin B1;(source:Araport11)
AT3G52260.4	protein_coding			Pseudouridine synthase family protein;(source:Araport11)
AT3G30122.2	pseudogene		pseudogene similar to peptide chain release factor protein	pseudogene of Peptide chain release factor 2;(source:Araport11)
AT3G30122.3	pseudogene		pseudogene similar to peptide chain release factor protein	pseudogene of Peptide chain release factor 2;(source:Araport11)
AT2G09715.1	long_noncoding_rna			None;(source:Araport11)
AT3G30122.5	pseudogene		pseudogene similar to peptide chain release factor protein	pseudogene of Peptide chain release factor 2;(source:Araport11)
AT3G30122.6	pseudogene		pseudogene similar to peptide chain release factor protein	pseudogene of Peptide chain release factor 2;(source:Araport11)
AT3G30122.7	pseudogene		pseudogene similar to peptide chain release factor protein	pseudogene of Peptide chain release factor 2;(source:Araport11)
AT4G04505.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G03330;(source:Araport11)
AT4G01950.2	protein_coding		putative sn-glycerol-3-phosphate 2-O-acyltransferase	glycerol-3-phosphate acyltransferase 3;(source:Araport11)
AT3G25440.4	protein_coding			RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT3G25440.3	protein_coding			RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT1G79110.3	protein_coding		Encodes one of the BRGs (BOI-related gene) involved in resistance to Botrytis cinerea.	zinc ion binding protein;(source:Araport11)
AT1G05453.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G18890;(source:Araport11)
AT2G07905.1	long_noncoding_rna			None;(source:Araport11)
AT3G23350.2	protein_coding			ENTH/VHS family protein;(source:Araport11)
AT5G62000.uORF1	uORF			Derives_from AT5G62000;(source:Araport11)
AT1G56230.3	protein_coding			enolase (DUF1399);(source:Araport11)
AT1G65490.3	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT1G49560.2	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT1G23720.3	protein_coding			Proline-rich extensin-like family protein;(source:Araport11)
AT4G00440.5	protein_coding			GPI-anchored adhesin-like protein, putative (DUF3741);(source:Araport11)
AT1G56230.4	protein_coding			enolase (DUF1399);(source:Araport11)
AT4G10590.4	protein_coding		encodes a member of the ubiquitin-specific protease family, UBP10	ubiquitin-specific protease 10;(source:Araport11)
AT3G07495.1	long_noncoding_rna			None;(source:Araport11)
AT3G08760.3	protein_coding		Encodes an osmotic stress-inducible kinase that functions as a negative regulator of osmotic stress signaling in plants.	Protein kinase superfamily protein;(source:Araport11)
AT1G48660.2	protein_coding			Auxin-responsive GH3 family protein;(source:Araport11)
AT4G32420.5	protein_coding			Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G56600.3	protein_coding			phosphatidylinositol 4-kinase gamma-like protein;(source:Araport11)
AT2G39830.4	protein_coding		Essential for early phloem development and function, and for root system development.DAR2 is a member of a small (7 member) ubiquitin binding protein family. It appears to play a role in regulation of endoreduplication in leaf epidermal tissue.	DA1-related protein 2;(source:Araport11)
AT5G17530.6	protein_coding			phosphoglucosamine mutase family protein;(source:Araport11)
AT3G16940.3	protein_coding			calmodulin-binding transcription activator;(source:Araport11)
AT4G00460.3	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 3;(source:Araport11)
AT2G41375.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G67420.2	protein_coding		Encodes a LOB-domain protein involved in nitrogen metabolism and affecting leaf morphogenesis.	LOB domain-containing protein 37;(source:Araport11)
AT1G16070.3	protein_coding		Member of TLP family	tubby like protein 8;(source:Araport11)
AT3G48410.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G34480.2	protein_coding			O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT4G34480.3	protein_coding			O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT1G62320.3	protein_coding			ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT1G62320.2	protein_coding			ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT1G62320.5	protein_coding			ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT1G62320.4	protein_coding			ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT3G44960.3	protein_coding			shugoshin;(source:Araport11)
AT1G04187.1	small_nucleolar_rna			None;(source:Araport11)
AT1G05517.1	long_noncoding_rna			None;(source:Araport11)
AT5G08955.1	long_noncoding_rna			None;(source:Araport11)
AT5G58000.2	protein_coding			Reticulon family protein;(source:Araport11)
AT2G36250.3	protein_coding		Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis.  It is involved in chloroplast division.	Tubulin/FtsZ family protein;(source:Araport11)
AT1G16290.2	protein_coding			transglycosylase;(source:Araport11)
AT2G33240.2	protein_coding		member of Myosin-like proteins	myosin XI D;(source:Araport11)
AT1G63670.5	protein_coding			hypothetical protein (DUF3741);(source:Araport11)
AT2G09775.1	long_noncoding_rna			None;(source:Araport11)
AT1G77530.2	protein_coding			O-methyltransferase family protein;(source:Araport11)
AT2G26820.4	protein_coding			phloem protein 2-A3;(source:Araport11)
AT1G04760.2	protein_coding		member of Synaptobrevin -like protein family	vesicle-associated membrane protein 726;(source:Araport11)
AT5G08975.1	long_noncoding_rna			None;(source:Araport11)
AT5G11530.3	protein_coding		Involved in regulating reproductive development	embryonic flower 1 (EMF1);(source:Araport11)
AT1G11820.3	protein_coding			O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT5G08175.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G54300;(source:Araport11)
AT1G73680.4	protein_coding		Encodes an alpha dioxygenase.  Recombinant protein catalyzes the conversion of a wide range of fatty acids into 2(R)-hydroperoxy derivatives.	alpha dioxygenase;(source:Araport11)
AT1G15085.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G69340.2	protein_coding			appr-1-p processing enzyme family protein;(source:Araport11)
AT1G08945.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G07520.2	protein_coding		encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12).	glycine-rich protein 18;(source:Araport11)
AT1G20490.2	protein_coding			AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT1G07780.10	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT1G07780.11	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT1G07780.12	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT1G07780.13	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.The mRNA is cell-to-cell mobile.	phosphoribosylanthranilate isomerase 1;(source:Araport11)
AT3G00710.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G31280.uORF1	uORF			Derives_from AT2G31280;(source:Araport11)
AT4G17480.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G22210.2	protein_coding		Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	low-molecular-weight cysteine-rich 85;(source:Araport11)
AT4G20260.10	protein_coding		Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and  PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels.The mRNA is cell-to-cell mobile.	plasma-membrane associated cation-binding protein 1;(source:Araport11)
AT1G27430.2	protein_coding			GYF domain-containing protein;(source:Araport11)
AT1G27430.3	protein_coding			GYF domain-containing protein;(source:Araport11)
AT4G17480.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G17480.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G36340.2	protein_coding			ubiquitin-conjugating enzyme 31;(source:Araport11)
AT2G45300.2	protein_coding		encodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesisThe mRNA is cell-to-cell mobile.	RNA 3-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta;(source:Araport11)
AT4G08925.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G34120;(source:Araport11)
AT1G47530.2	protein_coding			MATE efflux family protein;(source:Araport11)
AT2G09345.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42230;(source:Araport11)
AT5G05995.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G39670;(source:Araport11)
AT2G45300.4	protein_coding		encodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesisThe mRNA is cell-to-cell mobile.	RNA 3-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta;(source:Araport11)
AT4G08255.1	long_noncoding_rna			None;(source:Araport11)
AT5G09285.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G64920;(source:Araport11)
AT4G03935.3	other_rna			None;(source:Araport11)
AT4G03935.2	other_rna			None;(source:Araport11)
AT2G35880.3	protein_coding			TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT1G27770.4	protein_coding		Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.	autoinhibited Ca2+-ATPase 1;(source:Araport11)
AT1G66940.4	protein_coding			kinase-like protein;(source:Araport11)
AT1G20870.2	protein_coding		Encodes an anti-silencing factor that prevents gene repression and DNA hypermethylation.	HSP20-like chaperones superfamily protein;(source:Araport11)
AT3G05315.1	long_noncoding_rna			None;(source:Araport11)
AT3G02995.1	long_noncoding_rna			None;(source:Araport11)
AT5G62165.16	protein_coding		Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT5G19670.2	protein_coding			Exostosin family protein;(source:Araport11)
AT3G45040.2	protein_coding		Encodes a putative dolichol kinase that is localized to the endoplasmic reticulum and involved in pollen tube reception in the female gametophyte.	phosphatidate cytidylyltransferase family protein;(source:Araport11)
AT2G04885.1	long_noncoding_rna			None;(source:Araport11)
AT1G05503.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT2G08880.1	long_noncoding_rna			None;(source:Araport11)
AT5G41780.4	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT4G09395.1	long_noncoding_rna			None;(source:Araport11)
AT5G13350.2	protein_coding			Auxin-responsive GH3 family protein;(source:Araport11)
AT5G41780.2	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT3G06500.2	protein_coding		Encodes an alkaline/neutral invertase which localizes in mitochondria.  It may be modulating hormone balance in relation to the radicle emergence. Mutants display severely reduced shoot growth and reduced oxygen consumption.  Mutant root development is not affected as reported for A/N-InvA mutant (inva) plants.The mRNA is cell-to-cell mobile.	Plant neutral invertase family protein;(source:Araport11)
AT5G38900.2	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT1G04827.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G10865;(source:Araport11)
AT5G08785.1	long_noncoding_rna			None;(source:Araport11)
AT2G04025.2	protein_coding		Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor;(source:Araport11)
AT4G20360.2	protein_coding		Nuclear transcribed, plastid localized EF-Tu translation elongation factor. Referred to as AtRabE1b in DOI:10.1104/pp.013052.  However, wider community usage and more publications assign the symbol RabE1b to At5g59840.	RAB GTPase homolog E1B;(source:Araport11)
AT1G77890.5	protein_coding			DNA-directed RNA polymerase II protein;(source:Araport11)
AT1G77890.4	protein_coding			DNA-directed RNA polymerase II protein;(source:Araport11)
AT1G10600.4	protein_coding			associated molecule with the SH3 domain of STAM 2;(source:Araport11)
AT4G10770.2	protein_coding		oligopeptide transporter	oligopeptide transporter 7;(source:Araport11)
AT2G08890.1	long_noncoding_rna			None;(source:Araport11)
AT5G38860.2	protein_coding		Encodes BES1-INTERACTING MYC-LIKE 3 (BIM3), a PAR1 (PHYTOCHROME RAPIDLY REGULATED 1)-interacting protein that positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	BES1-interacting Myc-like protein 3;(source:Araport11)
AT3G05745.1	long_noncoding_rna			None;(source:Araport11)
AT1G11330.3	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT5G03065.1	long_noncoding_rna			None;(source:Araport11)
AT5G06295.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G42320;(source:Araport11)
AT2G07890.1	long_noncoding_rna			None;(source:Araport11)
AT2G25480.2	protein_coding			TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT1G14520.4	protein_coding		Encodes MIOX1.  Belongs to  myo-inositol oxygenase gene family.	myo-inositol oxygenase 1;(source:Araport11)
AT2G23960.2	protein_coding			Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT1G04117.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G02420;(source:Araport11)
AT1G63670.4	protein_coding			hypothetical protein (DUF3741);(source:Araport11)
AT2G24630.2	protein_coding		encodes a gene similar to cellulose synthase	Glycosyl transferase family 2 protein;(source:Araport11)
AT1G73680.3	protein_coding		Encodes an alpha dioxygenase.  Recombinant protein catalyzes the conversion of a wide range of fatty acids into 2(R)-hydroperoxy derivatives.	alpha dioxygenase;(source:Araport11)
AT1G04080.4	protein_coding		Encodes a U1 small nuclear ribonucleoprotein (snRNP) factor involved in alternative splicing.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G04080.5	protein_coding		Encodes a U1 small nuclear ribonucleoprotein (snRNP) factor involved in alternative splicing.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G04047.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G01725;(source:Araport11)
AT5G04515.1	long_noncoding_rna			None;(source:Araport11)
AT3G46200.2	protein_coding		Encodes a GDP-d-mannose pyrophosphohydrolase that is involved in the regulation of GDP-d-Man levels affecting ammonium sensitivity via modulation of protein N-glycosylation in the roots.	nudix hydrolase homolog 9;(source:Araport11)
AT3G46200.3	protein_coding		Encodes a GDP-d-mannose pyrophosphohydrolase that is involved in the regulation of GDP-d-Man levels affecting ammonium sensitivity via modulation of protein N-glycosylation in the roots.	nudix hydrolase homolog 9;(source:Araport11)
AT2G26800.4	protein_coding		Mutant has increased seed ile, leu and val as well as his and arg.	Aldolase superfamily protein;(source:Araport11)
AT3G46200.6	protein_coding		Encodes a GDP-d-mannose pyrophosphohydrolase that is involved in the regulation of GDP-d-Man levels affecting ammonium sensitivity via modulation of protein N-glycosylation in the roots.	nudix hydrolase homolog 9;(source:Araport11)
AT3G46200.4	protein_coding		Encodes a GDP-d-mannose pyrophosphohydrolase that is involved in the regulation of GDP-d-Man levels affecting ammonium sensitivity via modulation of protein N-glycosylation in the roots.	nudix hydrolase homolog 9;(source:Araport11)
AT3G46200.5	protein_coding		Encodes a GDP-d-mannose pyrophosphohydrolase that is involved in the regulation of GDP-d-Man levels affecting ammonium sensitivity via modulation of protein N-glycosylation in the roots.	nudix hydrolase homolog 9;(source:Araport11)
AT1G03280.3	protein_coding			Transcription factor TFIIE, alpha subunit;(source:Araport11)
AT1G03280.2	protein_coding			Transcription factor TFIIE, alpha subunit;(source:Araport11)
AT4G33760.2	protein_coding		Aminoacyl tRNA synthetase functions in SAM maintenance.	tRNA synthetase class II (D, K and N) family protein;(source:Araport11)
AT4G26640.4	protein_coding		member of WRKY Transcription Factor; Group I	WRKY family transcription factor family protein;(source:Araport11)
AT2G06983.2	protein_coding		Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 16;(source:Araport11)
AT1G04677.1	long_noncoding_rna			None;(source:Araport11)
AT4G01510.3	protein_coding			Arv1-like protein;(source:Araport11)
AT1G19025.3	protein_coding			DNA repair metallo-beta-lactamase family protein;(source:Araport11)
AT1G19025.2	protein_coding			DNA repair metallo-beta-lactamase family protein;(source:Araport11)
AT5G38590.3	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G38590.4	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G63930.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G05870.3	protein_coding		Subunit of the anaphase promoting complex, a ubiquitin ligase complex that regulates progression through the cell cycle.	anaphase-promoting complex/cyclosome 11;(source:Araport11)
AT2G10455.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G16230.8	protein_coding			Putative eukaryotic LigT;(source:Araport11)
AT3G16230.9	protein_coding			Putative eukaryotic LigT;(source:Araport11)
AT3G16230.6	protein_coding			Putative eukaryotic LigT;(source:Araport11)
AT4G05525.1	long_noncoding_rna			None;(source:Araport11)
AT3G16230.4	protein_coding			Putative eukaryotic LigT;(source:Araport11)
AT1G62800.3	protein_coding		Encodes aspartate aminotransferase (Asp4).	aspartate aminotransferase 4;(source:Araport11)
AT4G29230.3	protein_coding			NAC domain containing protein 75;(source:Araport11)
AT4G29230.2	protein_coding			NAC domain containing protein 75;(source:Araport11)
AT1G66760.3	protein_coding			MATE efflux family protein;(source:Araport11)
AT3G05870.5	protein_coding		Subunit of the anaphase promoting complex, a ubiquitin ligase complex that regulates progression through the cell cycle.	anaphase-promoting complex/cyclosome 11;(source:Araport11)
AT4G35940.8	protein_coding			hypothetical protein;(source:Araport11)
AT5G22640.3	protein_coding		EMB1211 is a MORN (multiple membrane  occupation and recognition nexus) motif containing protein involved in embryo development and chloroplast biogenesis.The mRNA is cell-to-cell mobile.	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein;(source:Araport11)
AT3G60910.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G10130.2	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT3G51480.2	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 3.6;(source:Araport11)
AT3G51480.3	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 3.6;(source:Araport11)
AT1G33590.2	protein_coding			Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G13075.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G35940.4	protein_coding			hypothetical protein;(source:Araport11)
AT4G35940.5	protein_coding			hypothetical protein;(source:Araport11)
AT4G35940.6	protein_coding			hypothetical protein;(source:Araport11)
AT4G35940.7	protein_coding			hypothetical protein;(source:Araport11)
AT2G20840.3	protein_coding			Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT2G20840.2	protein_coding			Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT1G06867.1	long_noncoding_rna			None;(source:Araport11)
AT3G08275.1	small_nucleolar_rna			None;(source:Araport11)
AT1G04853.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G11530;(source:Araport11)
AT5G04855.1	long_noncoding_rna			None;(source:Araport11)
AT3G11900.2	protein_coding		encodes an amino acid transporter that transports aromatic and neutral amino acids, IAA, and 2,4-D. Expressed in all tissues with highest abundance in flowers and cauline leaves. a member of a small gene family in Arabidopsis and represents a new class of amino acid transporters.	aromatic and neutral transporter 1;(source:Araport11)
AT4G31354.3	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.The mRNA is cell-to-cell mobile.	hypothetical protein;(source:Araport11)
AT4G31354.2	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.The mRNA is cell-to-cell mobile.	hypothetical protein;(source:Araport11)
AT1G62730.2	protein_coding			Terpenoid synthases superfamily protein;(source:Araport11)
AT2G28305.2	protein_coding			Putative lysine decarboxylase family protein;(source:Araport11)
AT5G11975.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G06980.1	long_noncoding_rna			None;(source:Araport11)
AT2G35230.3	protein_coding		Contains a plant-specific VQ motif. Involved in endosperm growth and seed size determination. IKU1 is expressed in the early endosperm and its progenitor, the central cell.IKU1 interacts with MINI3 in the yeast two-hybrid system.	VQ motif-containing protein;(source:Araport11)
AT1G74150.5	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G74150.4	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G74150.6	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G44710.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G44710.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G74150.3	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G74150.2	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G07890.4	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT5G07890.5	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT1G78580.2	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain but no trehalose phosphatase (TPP)-like domain.  ATTPS1 is able to complement yeast tps1 mutants in vivo. The gene product modulates cell growth but not cell differentiation by determining cell wall deposition and cell division.	trehalose-6-phosphate synthase;(source:Araport11)
AT4G39235.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G03935.1	long_noncoding_rna			None;(source:Araport11)
AT4G28250.4	protein_coding		putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin B3;(source:Araport11)
AT4G07455.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G04610.3	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT3G04610.2	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT1G05857.1	long_noncoding_rna			None;(source:Araport11)
AT3G02685.1	long_noncoding_rna			None;(source:Araport11)
AT3G04610.4	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT1G08977.1	long_noncoding_rna			None;(source:Araport11)
AT1G09647.1	long_noncoding_rna			None;(source:Araport11)
AT4G09865.1	long_noncoding_rna			None;(source:Araport11)
AT4G28250.3	protein_coding		putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	expansin B3;(source:Araport11)
AT4G07280.1	long_noncoding_rna			None;(source:Araport11)
AT5G51470.2	protein_coding			Auxin-responsive GH3 family protein;(source:Araport11)
AT4G12990.10	protein_coding			transmembrane protein;(source:Araport11)
AT5G05495.1	long_noncoding_rna			None;(source:Araport11)
AT5G20510.2	protein_coding		Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 5;(source:Araport11)
AT5G20510.3	protein_coding		Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 5;(source:Araport11)
AT1G10680.2	protein_coding			P-glycoprotein 10;(source:Araport11)
AT2G21550.2	protein_coding		One of three DRTS genes, this is the most divergent one.THY3/DRTS3 is preferentially expressed in the shoot apex, stipules and root caps.	Bifunctional dihydrofolate reductase/thymidylate synthase;(source:Araport11)
AT5G55100.12	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT4G02815.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G41025.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G38780.8	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT4G02815.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G02815.5	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G07085.1	long_noncoding_rna			None;(source:Araport11)
AT3G05095.1	long_noncoding_rna			None;(source:Araport11)
AT1G12750.6	protein_coding			RHOMBOID-like protein 6;(source:Araport11)
AT2G31860.2	pseudogene			pseudogene of poly(ADP-ribose) glycohydrolase 2;(source:Araport11)
AT1G05697.1	other_rna			None;(source:Araport11)
AT1G54217.7	protein_coding			Ribosomal protein L18ae family;(source:Araport11)
AT4G19420.3	protein_coding			Pectinacetylesterase family protein;(source:Araport11)
AT4G33700.3	protein_coding			CBS domain protein (DUF21);(source:Araport11)
AT3G48650.2	pseudogene			pseudogene of pectinesterase;(source:Araport11)
AT1G06213.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G29041;(source:Araport11)
AT5G08080.5	protein_coding		member of SYP13 Gene Family	syntaxin of plants 132;(source:Araport11)
AT4G26550.2	protein_coding			Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT2G30800.2	protein_coding		Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family.	helicase in vascular tissue and tapetum;(source:Araport11)
AT1G09035.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09743.1	long_noncoding_rna			None;(source:Araport11)
AT1G05167.2	novel_transcribed_region			novel transcribed region; detected in root, carpel, receptacle, dark-grown seedling, light-grown seedling, flower, pollen;(source:Araport11)
AT1G68937.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G16930.3	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G16930.2	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G01485.1	long_noncoding_rna			None;(source:Araport11)
AT2G35480.2	protein_coding			envelope glycoprotein;(source:Araport11)
AT5G10790.2	protein_coding		Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 22;(source:Araport11)
AT3G05015.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G26470;(source:Araport11)
AT1G76630.3	protein_coding		SKI3 encodes a cytplasmically localized component of the SKI complex which is involved in exosome mediated RNA decay.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G09507.1	long_noncoding_rna			None;(source:Araport11)
AT4G02760.4	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT2G08480.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G31890;(source:Araport11)
AT4G17470.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G09523.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G75080;(source:Araport11)
AT5G15390.2	protein_coding			tRNA/rRNA methyltransferase (SpoU) family protein;(source:Araport11)
AT5G26090.2	protein_coding			Plant self-incompatibility protein S1 family;(source:Araport11)
AT1G20065.4	protein_coding			DNA-directed RNA polymerase I subunit RPA12-like protein;(source:Araport11)
AT3G06770.5	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT4G02885.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G11960.3	protein_coding			Cleavage and polyadenylation specificity factor (CPSF) A subunit protein;(source:Araport11)
AT1G04455.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G25520.3	protein_coding		Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm.  It also plays a role in organ size control by promoting cell proliferation and preventing compensation in normal leaf development.	ribosomal protein L5;(source:Araport11)
AT3G06435.2	protein_coding			Expressed protein;(source:Araport11)
AT3G11960.4	protein_coding			Cleavage and polyadenylation specificity factor (CPSF) A subunit protein;(source:Araport11)
AT1G02260.2	protein_coding			Divalent ion symporter;(source:Araport11)
AT3G15980.7	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT3G15980.6	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT3G18530.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT3G18530.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT5G04130.3	protein_coding		Encodes a protein that when expressed together with GYRA generates an active supercoiling DNA gyrase enzyme that shares similar properties to its bacterial counterpart, including sensitivity to gyrase-specific antibiotics.	DNA GYRASE B2;(source:Araport11)
AT3G56700.2	protein_coding		Encodes a fatty-acyl-CoA reductase that is expressed in response to wounding.	fatty acid reductase 6;(source:Araport11)
AT4G05400.3	protein_coding			copper ion binding protein;(source:Araport11)
AT5G00995.1	long_noncoding_rna			None;(source:Araport11)
AT2G11215.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G02900.3	protein_coding			ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT3G00740.7	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G07963.1	antisense_rna			Natural antisense transcript overlaps with AT1G54320;(source:Araport11)
AT1G33590.3	protein_coding			Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G65850.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G05936.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G78890.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G19985.6	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G25350.2	protein_coding			Phox (PX) domain-containing protein;(source:Araport11)
AT2G40110.3	protein_coding			Yippee family putative zinc-binding protein;(source:Araport11)
AT4G35685.1	protein_coding			DNA-directed RNA polymerase III subunit;(source:Araport11)
AT1G08125.4	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G17240.2	protein_coding		Encodes a CLAVATA2 (CLV2)-related gene. Complements the clv2 mutant when expressed under the control of the CLV2 promoter.	receptor like protein 2;(source:Araport11)
AT2G25350.5	protein_coding			Phox (PX) domain-containing protein;(source:Araport11)
AT3G59190.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G34770.4	protein_coding		Encodes a nuclear localized,  structural subunit of the SMC 5/6 complex and a non- SMC element. Loss of function results in abnormal cell division and embryo lethality. Analysis of partially rescued lines indicates a role in double strand break DNA repair. Similar phenotype to NSE1 which it also interacts with.Maintains cell viability together with NSE1 during early embryogenesis.	melanoma-associated antigen G1-like protein;(source:Araport11)
AT5G49305.3	protein_coding			importin subunit alpha;(source:Araport11)
AT5G49305.2	protein_coding			importin subunit alpha;(source:Araport11)
AT5G49305.5	protein_coding			importin subunit alpha;(source:Araport11)
AT5G49305.4	protein_coding			importin subunit alpha;(source:Araport11)
AT5G07745.1	long_noncoding_rna			None;(source:Araport11)
AT1G34770.2	protein_coding		Encodes a nuclear localized,  structural subunit of the SMC 5/6 complex and a non- SMC element. Loss of function results in abnormal cell division and embryo lethality. Analysis of partially rescued lines indicates a role in double strand break DNA repair. Similar phenotype to NSE1 which it also interacts with.Maintains cell viability together with NSE1 during early embryogenesis.	melanoma-associated antigen G1-like protein;(source:Araport11)
AT3G51090.2	protein_coding			coiled-coil 90B-like protein (DUF1640);(source:Araport11)
AT3G07935.1	long_noncoding_rna			None;(source:Araport11)
AT4G19985.2	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT3G08840.10	protein_coding			D-alanine-D-alanine ligase family;(source:Araport11)
AT3G08840.11	protein_coding			D-alanine-D-alanine ligase family;(source:Araport11)
AT3G08840.12	protein_coding			D-alanine-D-alanine ligase family;(source:Araport11)
AT3G08840.13	protein_coding			D-alanine-D-alanine ligase family;(source:Araport11)
AT1G59620.2	protein_coding		Encodes CW9.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT4G26415.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G08403.1	long_noncoding_rna			None;(source:Araport11)
AT2G02497.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G04303.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G04910;(source:Araport11)
AT3G01040.3	protein_coding		Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 13;(source:Araport11)
AT5G57350.3	protein_coding		member of Plasma membrane H+-ATPase family	H[+]-ATPase 3;(source:Araport11)
AT5G57350.4	protein_coding		member of Plasma membrane H+-ATPase family	H[+]-ATPase 3;(source:Araport11)
AT4G37432.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G37430;(source:Araport11)
AT1G05837.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G23830;(source:Araport11)
AT5G27300.3	protein_coding			pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT2G30410.3	protein_coding		mutant has embryo defect; enlarged embryo cells and endosperm nuclei; Tubulin Folding Cofactor A	tubulin folding cofactor A (KIESEL);(source:Araport11)
AT5G47710.3	protein_coding			Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G43130.3	protein_coding			TBP-associated factor 4;(source:Araport11)
AT5G49960.3	protein_coding			ion channel protein;(source:Araport11)
AT1G08647.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G63980;(source:Araport11)
AT3G08175.1	long_noncoding_rna			None;(source:Araport11)
AT1G01190.2	protein_coding			cytochrome P450, family 78, subfamily A, polypeptide 8;(source:Araport11)
AT5G52950.2	protein_coding			LIM domain protein;(source:Araport11)
AT1G02840.4	protein_coding		SR34/SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G48560.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G05940.1	other_rna			None;(source:Araport11)
AT2G35160.4	protein_coding		Encodes SU(var)3-9 homologue 5 (SUVH5).  SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.	SU(VAR)3-9 homolog 5;(source:Araport11)
AT2G35160.5	protein_coding		Encodes SU(var)3-9 homologue 5 (SUVH5).  SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.	SU(VAR)3-9 homolog 5;(source:Araport11)
AT1G08663.1	long_noncoding_rna			None;(source:Araport11)
AT3G14467.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G35510.2	protein_coding			TIR-NBS-LRR class disease resistance protein;(source:Araport11)
AT5G10150.4	protein_coding		SOK2 is a DUF966 domain containing protein of unknown function. Expressed in discrete domains of the PM. In root endodermis and embryo, expression is in inner basal edges  and in basal	UPSTREAM OF FLC protein (DUF966);(source:Araport11)
AT2G35160.2	protein_coding		Encodes SU(var)3-9 homologue 5 (SUVH5).  SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.	SU(VAR)3-9 homolog 5;(source:Araport11)
AT5G37478.4	protein_coding			TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT1G21580.8	protein_coding		Encodes a zinc-finger protein that co-localizes with the exosome-associated RNA helicase HEN2 and functions as a co-factor of nuclear RNA quality control by the nucleoplasmic exosome.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G05987.1	long_noncoding_rna			None;(source:Araport11)
AT2G37540.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G09235.1	long_noncoding_rna			None;(source:Araport11)
AT5G03405.1	long_noncoding_rna			None;(source:Araport11)
AT4G34000.4	protein_coding		Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.	abscisic acid responsive elements-binding factor 3;(source:Araport11)
AT5G03435.2	protein_coding			Ca2+dependent plant phosphoribosyltransferase family protein;(source:Araport11)
AT5G59390.5	protein_coding			XH/XS domain-containing protein;(source:Araport11)
AT2G30900.2	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 43;(source:Araport11)
AT1G48230.2	protein_coding		Nucleotide/sugar transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G32360.5	protein_coding			Pyridine nucleotide-disulfide oxidoreductase family protein;(source:Araport11)
AT5G08425.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G55930;(source:Araport11)
AT2G08300.1	long_noncoding_rna			None;(source:Araport11)
AT4G11270.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G03765.1	long_noncoding_rna			None;(source:Araport11)
AT4G01130.2	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G09720.1	long_noncoding_rna			None;(source:Araport11)
AT4G12543.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G16560.6	protein_coding			Per1-like family protein;(source:Araport11)
AT1G16560.7	protein_coding			Per1-like family protein;(source:Araport11)
AT1G32870.3	protein_coding		Expression in rosette leaves is activated by high concentration of boron.	NAC domain protein 13;(source:Araport11)
AT3G06775.1	long_noncoding_rna			None;(source:Araport11)
AT5G08470.2	protein_coding		an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.	peroxisome 1;(source:Araport11)
AT1G16560.8	protein_coding			Per1-like family protein;(source:Araport11)
AT1G16560.9	protein_coding			Per1-like family protein;(source:Araport11)
AT1G47330.2	protein_coding			methyltransferase, putative (DUF21);(source:Araport11)
AT4G24990.2	protein_coding		geranylgeranylated protein ATGP4	Ubiquitin family protein;(source:Araport11)
AT1G53180.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G09910.5	protein_coding			Ras-related small GTP-binding family protein;(source:Araport11)
AT1G16060.6	protein_coding		Encodes ADAP, an AP2-domain protein that interacts with ARIA.  ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.	ARIA-interacting double AP2 domain protein;(source:Araport11)
AT1G06853.1	long_noncoding_rna			None;(source:Araport11)
AT5G58280.3	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G58280.2	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT1G22260.2	protein_coding		One of two nearly identical proteins (ZYP1b) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.	Myosin heavy chain-related protein;(source:Araport11)
AT1G22260.3	protein_coding		One of two nearly identical proteins (ZYP1b) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.	Myosin heavy chain-related protein;(source:Araport11)
AT3G59430.5	protein_coding			hypothetical protein;(source:Araport11)
AT3G59430.4	protein_coding			hypothetical protein;(source:Araport11)
AT3G18362.2	other_rna			None;(source:Araport11)
AT3G59430.6	protein_coding			hypothetical protein;(source:Araport11)
AT2G38780.7	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT3G59430.8	protein_coding			hypothetical protein;(source:Araport11)
AT5G25520.7	protein_coding			SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT1G74310.2	protein_coding		Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.	heat shock protein 101;(source:Araport11)
AT5G19970.2	protein_coding			GRAS family transcription factor family protein;(source:Araport11)
AT5G42730.2	pseudogene		pseudogene similar to ACT domain-containing protein, similar to F-box family protein	pseudogene of flavin-binding;(source:Araport11)
AT5G42730.3	pseudogene		pseudogene similar to ACT domain-containing protein, similar to F-box family protein	pseudogene of flavin-binding;(source:Araport11)
AT4G08991.2	pseudogene			pseudogene of cytochrome C oxidase assembly protein;(source:Araport11)
AT5G00685.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00685.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G23230.2	protein_coding			Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G47630.4	protein_coding			translocator assembly/maintenance protein;(source:Araport11)
AT2G40540.4	protein_coding		putative potassium transporter AtKT2p (AtKT2) mRNA,	potassium transporter 2;(source:Araport11)
AT2G13960.3	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT3G59410.3	protein_coding		Encodes an eIF2alpha kinase that can bind uncharged tRNA via its C-terminus and can phosphorylate both eIF2alpha homologues in Arabidopsis.	protein kinase family protein;(source:Araport11)
AT2G40540.3	protein_coding		putative potassium transporter AtKT2p (AtKT2) mRNA,	potassium transporter 2;(source:Araport11)
AT3G23090.4	protein_coding		Member of the microtubule regulatory protein WVD2/WDL family WDL3 stabilizes cortical microtubules and  is involved in light induced hypocotyl elongation. WDL3 is ubiquinated by COP1, leading to its degadation in the dark,	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT3G23090.5	protein_coding		Member of the microtubule regulatory protein WVD2/WDL family WDL3 stabilizes cortical microtubules and  is involved in light induced hypocotyl elongation. WDL3 is ubiquinated by COP1, leading to its degadation in the dark,	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT2G41560.3	protein_coding		Encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. Localized to the vacuole. Lesion mimic phenotype when mutation in the gene is combined with a mutation in ACA11.  Lesion mimic phenotype of double knockout can be suppressed by nutritional supplements that increase anion levels (e.g. 15 mM Nitrate, Chloride, or Phosphate).	autoinhibited Ca(2+)-ATPase, isoform 4;(source:Araport11)
AT2G44710.4	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G21550.2	protein_coding			VP1/ABI3-like 3;(source:Araport11)
AT4G21550.3	protein_coding			VP1/ABI3-like 3;(source:Araport11)
AT5G11380.4	protein_coding		Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.	1-deoxy-D-xylulose 5-phosphate synthase 3;(source:Araport11)
AT4G19440.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G50170.3	protein_coding		encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis	sirohydrochlorin ferrochelatase B;(source:Araport11)
AT1G50170.2	protein_coding		encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis	sirohydrochlorin ferrochelatase B;(source:Araport11)
AT3G01075.1	long_noncoding_rna			None;(source:Araport11)
AT3G50210.4	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G06117.1	long_noncoding_rna			None;(source:Araport11)
AT4G19440.4	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G07675.1	long_noncoding_rna			None;(source:Araport11)
AT3G10740.2	protein_coding		Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases.  It may be involved in cell wall modification.	alpha-L-arabinofuranosidase 1;(source:Araport11)
AT1G06770.3	protein_coding		Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.	DREB2A-interacting protein 1;(source:Araport11)
AT3G10740.4	protein_coding		Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases.  It may be involved in cell wall modification.	alpha-L-arabinofuranosidase 1;(source:Araport11)
AT3G08265.1	long_noncoding_rna			None;(source:Araport11)
AT1G04237.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G04040;(source:Araport11)
AT3G57530.2	protein_coding		Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro	calcium-dependent protein kinase 32;(source:Araport11)
AT3G10910.uORF1	uORF			Derives_from AT3G10910;(source:Araport11)
AT5G07095.1	small_nucleolar_rna			None;(source:Araport11)
AT1G05757.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G22510;(source:Araport11)
AT1G54773.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G07990.1	long_noncoding_rna			None;(source:Araport11)
AT2G08515.1	long_noncoding_rna			None;(source:Araport11)
AT2G41560.4	protein_coding		Encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. Localized to the vacuole. Lesion mimic phenotype when mutation in the gene is combined with a mutation in ACA11.  Lesion mimic phenotype of double knockout can be suppressed by nutritional supplements that increase anion levels (e.g. 15 mM Nitrate, Chloride, or Phosphate).	autoinhibited Ca(2+)-ATPase, isoform 4;(source:Araport11)
AT1G78580.4	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain but no trehalose phosphatase (TPP)-like domain.  ATTPS1 is able to complement yeast tps1 mutants in vivo. The gene product modulates cell growth but not cell differentiation by determining cell wall deposition and cell division.	trehalose-6-phosphate synthase;(source:Araport11)
AT5G24620.4	protein_coding			Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT5G37475.2	protein_coding			Translation initiation factor eIF3 subunit;(source:Araport11)
AT1G54650.3	protein_coding			Methyltransferase family protein;(source:Araport11)
AT1G09710.4	protein_coding		Paralog of DRMY1 with unknown function.	Homeodomain-like superfamily protein;(source:Araport11)
AT2G29525.5	protein_coding		Inositol phosphorylceramide synthase	Inositol phosphorylceramide synthase 3;(source:Araport11)
AT4G35240.3	protein_coding			DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632);(source:Araport11)
AT5G08485.1	long_noncoding_rna			None;(source:Araport11)
AT4G31405.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G28960.7	protein_coding		Encodes a ppGpp pyrophosphohydrolase.	nudix hydrolase homolog 15;(source:Araport11)
AT1G78580.3	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain but no trehalose phosphatase (TPP)-like domain.  ATTPS1 is able to complement yeast tps1 mutants in vivo. The gene product modulates cell growth but not cell differentiation by determining cell wall deposition and cell division.	trehalose-6-phosphate synthase;(source:Araport11)
AT2G47090.3	protein_coding			zinc ion binding/nucleic acid binding protein;(source:Araport11)
AT2G47090.5	protein_coding			zinc ion binding/nucleic acid binding protein;(source:Araport11)
AT5G55540.2	protein_coding		Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway.	tornado 1;(source:Araport11)
AT1G54510.5	protein_coding		Encodes AtNEK1, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related serine/threonine kinase 1;(source:Araport11)
AT4G08175.1	small_nucleolar_rna			None;(source:Araport11)
AT4G32360.4	protein_coding			Pyridine nucleotide-disulfide oxidoreductase family protein;(source:Araport11)
AT2G03925.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G01290;(source:Araport11)
AT4G10200.2	protein_coding			TTF-type zinc finger protein with HAT dimerization domain-containing protein;(source:Araport11)
AT1G79740.2	protein_coding			hAT transposon superfamily;(source:Araport11)
AT3G29280.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G55550.8	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G55550.9	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G05115.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, light-grown seedling, flower, pollen, aerial;(source:Araport11)
AT2G21380.2	protein_coding			Kinesin motor family protein;(source:Araport11)
AT5G55550.5	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G55550.6	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G09495.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G43640;(source:Araport11)
AT1G06173.1	long_noncoding_rna			None;(source:Araport11)
AT4G36140.2	protein_coding			disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT3G03610.2	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT3G03610.3	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT3G09875.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G62830;(source:Araport11)
AT4G20935.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G08503.1	long_noncoding_rna			None;(source:Araport11)
AT4G27610.9	protein_coding			intracellular protein transporter;(source:Araport11)
AT4G14746.2	protein_coding			neurogenic locus notch-like protein;(source:Araport11)
AT4G27610.7	protein_coding			intracellular protein transporter;(source:Araport11)
AT4G27610.6	protein_coding			intracellular protein transporter;(source:Araport11)
AT4G27610.5	protein_coding			intracellular protein transporter;(source:Araport11)
AT4G27610.4	protein_coding			intracellular protein transporter;(source:Araport11)
AT3G02265.1	long_noncoding_rna			None;(source:Araport11)
AT5G04435.1	long_noncoding_rna			None;(source:Araport11)
AT1G61215.2	protein_coding		Bromodomain protein with a DNA binding motif	bromodomain 4;(source:Araport11)
AT2G14620.2	protein_coding			xyloglucan endotransglucosylase/hydrolase 10;(source:Araport11)
AT5G10680.2	protein_coding			calmodulin-binding protein-like protein;(source:Araport11)
AT1G10780.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT3G44200.2	protein_coding		Encodes AtNek5, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.Interacts physically with plant kinesins ARK1 and ARK2. Mutants show defects in root epidermal cell morphology, trichome branching and other epidermal cell abnormalities suggesting a rol e in epidermal cell differentiation. NEK6 co-localizes with cortical microtubules.	serine/threonine-protein kinase NEK5;(source:Araport11)
AT1G80380.6	protein_coding		encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G08117.1	small_nucleolar_rna			None;(source:Araport11)
AT1G49360.2	protein_coding			F-box family protein;(source:Araport11)
AT1G49360.3	protein_coding			F-box family protein;(source:Araport11)
AT3G47420.3	protein_coding		Encodes a Pi starvation-responsive protein AtPS3. A member of the phosphate starvation-induced glycerol-3-phosphate permease gene family: AT3G47420(G3Pp1), AT4G25220(G3Pp2), AT1G30560(G3Pp3), AT4G17550(G3Pp4) and AT2G13100(G3Pp5). Its expression is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.	putative glycerol-3-phosphate transporter 1;(source:Araport11)
AT3G47420.2	protein_coding		Encodes a Pi starvation-responsive protein AtPS3. A member of the phosphate starvation-induced glycerol-3-phosphate permease gene family: AT3G47420(G3Pp1), AT4G25220(G3Pp2), AT1G30560(G3Pp3), AT4G17550(G3Pp4) and AT2G13100(G3Pp5). Its expression is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.	putative glycerol-3-phosphate transporter 1;(source:Araport11)
AT1G49360.4	protein_coding			F-box family protein;(source:Araport11)
AT4G17785.2	protein_coding		Encodes a putative transcription factor (MYB39).	myb domain protein 39;(source:Araport11)
AT5G04860.2	protein_coding			splicing factor 3A subunit;(source:Araport11)
AT1G07027.1	long_noncoding_rna			None;(source:Araport11)
AT4G14290.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G14290.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G14290.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G14290.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G14620.3	protein_coding			xyloglucan endotransglucosylase/hydrolase 10;(source:Araport11)
AT3G02765.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G13772;(source:Araport11)
AT3G27300.4	protein_coding			glucose-6-phosphate dehydrogenase 5;(source:Araport11)
AT2G08755.1	small_nucleolar_rna			None;(source:Araport11)
AT1G09140.3	protein_coding		Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SERINE-ARGININE PROTEIN 30;(source:Araport11)
AT2G31751.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G31750;(source:Araport11)
AT2G31751.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G31750;(source:Araport11)
AT5G36185.2	pseudogene			pseudogene of serine carboxypeptidase-like 1;(source:Araport11)
AT2G22760.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G31751.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G31750;(source:Araport11)
AT2G31751.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G31750;(source:Araport11)
AT1G71680.2	protein_coding			Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G59520.4	protein_coding		Encodes CW7.	CW7;(source:Araport11)
AT5G60120.6	protein_coding			target of early activation tagged (EAT) 2;(source:Araport11)
AT3G58410.2	protein_coding			TRAF-like family protein;(source:Araport11)
AT5G06690.3	protein_coding		Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma.  Contains a WCRKC motif. Functions in redox cascade with 2CPA and 2CPB via the ferredoxin-thioredoxin reductase (FTR)/thioredoxin (Trx) pathway to mediate the light-responsive reductive control of target proteins. Oxidizes redox-regulated proteins.	WCRKC thioredoxin 1;(source:Araport11)
AT2G09655.1	long_noncoding_rna			None;(source:Araport11)
AT3G21110.3	protein_coding		5 Prime-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.	purin 7;(source:Araport11)
AT5G05935.1	long_noncoding_rna			None;(source:Araport11)
AT2G05625.1	long_noncoding_rna			None;(source:Araport11)
AT3G18915.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G07947.1	long_noncoding_rna			None;(source:Araport11)
AT4G01600.3	protein_coding			GRAM domain family protein;(source:Araport11)
AT5G04320.5	protein_coding		Encodes a protein that protects meiotic centromere cohesion.	Shugoshin C terminus;(source:Araport11)
AT4G32850.13	protein_coding		Encodes a nuclear poly(A) polymerase. Located in the nucleus.The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT3G57440.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G60120.3	protein_coding			target of early activation tagged (EAT) 2;(source:Araport11)
AT5G04320.3	protein_coding		Encodes a protein that protects meiotic centromere cohesion.	Shugoshin C terminus;(source:Araport11)
AT4G32850.12	protein_coding		Encodes a nuclear poly(A) polymerase. Located in the nucleus.The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT1G07127.1	long_noncoding_rna			None;(source:Araport11)
AT5G40153.1	protein_coding			peroxidase;(source:Araport11)
AT5G03395.1	long_noncoding_rna			None;(source:Araport11)
AT1G12200.2	protein_coding		Putative flavin monooxygenase.	Flavin-binding monooxygenase family protein;(source:Araport11)
AT2G34317.1	protein_coding			avirulence induced family protein;(source:Araport11)
AT2G30070.2	protein_coding		Encodes a high affinity potassium transporter.	potassium transporter 1;(source:Araport11)
AT5G51100.3	protein_coding		Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.	Fe superoxide dismutase 2;(source:Araport11)
AT1G33415.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G33420 and AT1G33430;(source:Araport11)
AT2G09095.1	long_noncoding_rna			None;(source:Araport11)
AT5G41170.2	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT3G17040.3	protein_coding		It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. It binds in the psbT?psbH intercistronic region and blocks the progression of 5&#8242; &#8594; 3&#8242; exoribonucleases, which defines the 5&#8242; end of processed psbH transcripts and also stabilizes the downstream RNA segment. In addition, HCF107 binding remodels the structure of the psbH 5&#8242; UTR in a way that can account for its ability to enhance psbH translation.	high chlorophyll fluorescent 107;(source:Araport11)
AT4G32850.15	protein_coding		Encodes a nuclear poly(A) polymerase. Located in the nucleus.The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT5G07015.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G47640;(source:Araport11)
AT5G53870.2	protein_coding			early nodulin-like protein 1;(source:Araport11)
AT4G32850.14	protein_coding		Encodes a nuclear poly(A) polymerase. Located in the nucleus.The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT5G46590.2	protein_coding			NAC domain containing protein 96;(source:Araport11)
AT1G68550.uORF1-1	uORF			Derives_from AT1G68550;(source:Araport11)
AT4G08475.1	long_noncoding_rna			None;(source:Araport11)
AT4G15530.7	protein_coding		Encodes a dual-targeted protein believed to act as a pyruvate, orthophosphate dikinase. These enzymes are normally associated with C4 photosynthesis which does not occur in Arabidopsis. However, PPDK may play a role in remobilizing nitrogen during leaf senescence in Arabidopsis. The product of the long transcript (.1 gene model) was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. The two proteins were also found to be expressed in slightly different tissues.	pyruvate orthophosphate dikinase;(source:Araport11)
AT5G14770.5	protein_coding			PPR repeat protein;(source:Araport11)
AT5G14770.4	protein_coding			PPR repeat protein;(source:Araport11)
AT5G14770.3	protein_coding			PPR repeat protein;(source:Araport11)
AT3G43700.2	protein_coding		Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 6;(source:Araport11)
AT2G00720.6	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00720.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00720.5	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00720.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00720.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00720.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G03315.1	antisense_rna			Natural antisense transcript overlaps with AT5G21920;(source:Araport11)
AT4G01915.4	protein_coding			hypothetical protein;(source:Araport11)
AT2G04062.1	protein_coding			beta-galactosidase-like protein;(source:Araport11)
AT1G05363.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G18030;(source:Araport11)
AT4G18020.7	protein_coding		Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).	CheY-like two-component responsive regulator family protein;(source:Araport11)
AT4G16480.2	protein_coding		Encodes a high affinity H+:<i>myo</i>-inositol symporter. The only other compound shown to be transported was pinitol, a methylated derivative of <i>myo</i>-inositol.The mRNA is cell-to-cell mobile.	inositol transporter 4;(source:Araport11)
AT4G16480.3	protein_coding		Encodes a high affinity H+:<i>myo</i>-inositol symporter. The only other compound shown to be transported was pinitol, a methylated derivative of <i>myo</i>-inositol.The mRNA is cell-to-cell mobile.	inositol transporter 4;(source:Araport11)
AT5G08375.1	long_noncoding_rna			None;(source:Araport11)
AT4G18020.9	protein_coding		Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).	CheY-like two-component responsive regulator family protein;(source:Araport11)
AT1G07923.1	long_noncoding_rna			None;(source:Araport11)
AT5G01765.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G10550;(source:Araport11)
AT4G22540.6	protein_coding			OSBP(oxysterol binding protein)-related protein 2A;(source:Araport11)
AT1G50500.4	protein_coding		encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress.	Membrane trafficking VPS53 family protein;(source:Araport11)
AT3G02670.2	protein_coding			Glycine-rich protein family;(source:Araport11)
AT1G50500.3	protein_coding		encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress.	Membrane trafficking VPS53 family protein;(source:Araport11)
AT2G21370.4	protein_coding		Although this gene has a sequence similar to xylulose kinases, several lines of experimental evidence suggest that it does not act on xylulose or deoxy-xylulose.	xylulose kinase-1;(source:Araport11)
AT5G60100.7	protein_coding		Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.	pseudo-response regulator 3;(source:Araport11)
AT2G46800.3	protein_coding		Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis.	zinc transporter;(source:Araport11)
AT4G08595.1	long_noncoding_rna			None;(source:Araport11)
AT2G46800.5	protein_coding		Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis.	zinc transporter;(source:Araport11)
AT4G24810.5	protein_coding		similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)	Protein kinase superfamily protein;(source:Araport11)
AT4G24810.6	protein_coding		similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)	Protein kinase superfamily protein;(source:Araport11)
AT2G21370.3	protein_coding		Although this gene has a sequence similar to xylulose kinases, several lines of experimental evidence suggest that it does not act on xylulose or deoxy-xylulose.	xylulose kinase-1;(source:Araport11)
AT2G09415.1	long_noncoding_rna			None;(source:Araport11)
AT3G12020.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G00390.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G25012.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G34855.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G00740.6	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G45140.2	protein_coding		Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.The mRNA is cell-to-cell mobile.	plant VAP homolog 12;(source:Araport11)
AT1G45010.2	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT2G47920.2	protein_coding			Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT2G24650.3	protein_coding			B3 domain-containing protein REM13;(source:Araport11)
AT3G28700.3	protein_coding			NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185);(source:Araport11)
AT2G24535.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G24535.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G16340.2	protein_coding		Encodes SPIKE1 (SPK1), the lone DOCK family guanine nucleotide exchange factor (GEF) in Arabidopsis.  SPK1 is a peripheral membrane protein that accumulates at, and promotes the formation of, a specialized domain of the endoplasmic reticulum (ER) termed the ER exit site (ERES). SPK1 promotes polarized growth and cell-cell adhesion in the leaf epidermis. Mutant has seedling lethal; cotyledon, leaf-shape, trichome defects.	guanyl-nucleotide exchange factors;(source:Araport11)
AT1G31170.5	protein_coding		encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress	sulfiredoxin;(source:Araport11)
AT3G16440.2	protein_coding		myrosinase-binding protein-like protein (AtMLP-300B) mRNA,	myrosinase-binding protein-like protein-300B;(source:Araport11)
AT2G29910.5	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT3G01140.2	protein_coding		Encodes a MIXTA-like MYB gene NOECK (NOK). Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.	myb domain protein 106;(source:Araport11)
AT3G18170.2	protein_coding			Glycosyltransferase family 61 protein;(source:Araport11)
AT2G29070.3	protein_coding			Ubiquitin fusion degradation UFD1 family protein;(source:Araport11)
AT5G49290.4	protein_coding			receptor like protein 56;(source:Araport11)
AT1G76320.3	protein_coding			FAR1-related sequence 4;(source:Araport11)
AT1G76320.4	protein_coding			FAR1-related sequence 4;(source:Araport11)
AT2G28315.2	protein_coding		UXT1 is a member of the NST-KT subfamily  of nucleotide/sugar transporters. It is localized to the golgi and ER. UXT1 functions as a UDP-Xyl transporter, facilitating the flow of UDP-Xyl from the endoplasmatic reticulum into the Golgi lumen. UXT1 affects both xylan length and structure, secondary cell wall thickening, and plant growth. The mRNA is cell-to-cell mobile.	Nucleotide/sugar transporter family protein;(source:Araport11)
AT1G61190.2	protein_coding		Putative CC-NB-LRR resistance gene. It Primes ortholog in ecotype Wei-0 RPP39 (R_190-Wei-0, accession number JQ045573, PMID:22359513) has been shown experimentally to recognize the effector ATR39-1 produced by Hyaloperonospora arabidopsidis (Hpa).The mRNA is cell-to-cell mobile.	LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT2G08150.1	long_noncoding_rna			None;(source:Araport11)
AT4G22640.2	protein_coding			Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT3G55513.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06463.1	small_nucleolar_rna			None;(source:Araport11)
AT2G04995.1	long_noncoding_rna			None;(source:Araport11)
AT1G05373.1	long_noncoding_rna			None;(source:Araport11)
AT5G07100.3	protein_coding		Encodes WRKY DNA-binding protein 26 (WRKY26).	WRKY DNA-binding protein 26;(source:Araport11)
AT2G45950.4	protein_coding			SKP1-like 20;(source:Araport11)
AT2G45950.5	protein_coding			SKP1-like 20;(source:Araport11)
AT3G59765.2	other_rna			None;(source:Araport11)
AT3G59765.3	other_rna			None;(source:Araport11)
AT5G03075.1	long_noncoding_rna			None;(source:Araport11)
AT5G09070.1	long_noncoding_rna			None;(source:Araport11)
AT1G09627.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G76390;(source:Araport11)
AT1G48260.2	protein_coding		Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17).	CBL-interacting protein kinase 17;(source:Araport11)
AT2G17060.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G06665.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G17090;(source:Araport11)
AT5G08890.1	long_noncoding_rna			None;(source:Araport11)
AT4G36600.2	protein_coding			Late embryogenesis abundant (LEA) protein;(source:Araport11)
AT4G05780.1	long_noncoding_rna			None;(source:Araport11)
AT1G67080.2	protein_coding		Encodes a protein involved in the photoprotection of PSII. An aba4-1 mutant completely lacks neoxanthin,a component of the chromophore of the peripheral antenna system in PSII. ABA4 is required for neoxanthin biosynthesis, an intermediary step in abscisic acid biosynthesis, but no catalytic activity has been detected for the ABA4 protein.	abscisic acid (aba)-deficient 4;(source:Araport11)
AT3G04085.1	long_noncoding_rna			None;(source:Araport11)
AT2G21020.2	pseudogene			pseudogene of NOD26-like intrinsic protein 3;(source:Araport11)
AT5G09295.1	long_noncoding_rna			None;(source:Araport11)
AT2G24710.2	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.3;(source:Araport11)
AT4G19450.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT4G03035.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G26540.2	protein_coding		Encodes a uroporphyrinogen-III synthase involved in tetrapyrrole biosynthesis. The protein localizes to the chloroplast.  Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype	uroporphyrinogen-III synthase family protein;(source:Araport11)
AT1G59218.3	protein_coding		Similar to disease resistance proteins.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT3G01655.1	long_noncoding_rna			None;(source:Araport11)
AT1G02400.2	protein_coding		Encodes a gibberellin 2-oxidase that acts on C19 gibberellins but not C20 gibberellins.	gibberellin 2-oxidase 6;(source:Araport11)
AT2G07575.1	other_rna			None;(source:Araport11)
AT3G05805.1	long_noncoding_rna			None;(source:Araport11)
AT3G45440.4	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT2G33540.2	protein_coding			C-terminal domain phosphatase-like 3;(source:Araport11)
AT3G45440.3	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G45440.2	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT1G69480.2	protein_coding			EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT2G06850.2	protein_coding		endoxyloglucan transferase (EXGT-A1) gene	xyloglucan endotransglucosylase/hydrolase 4;(source:Araport11)
AT2G07654.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G48180.4	protein_coding			target of trans acting-siR480/255 protein;(source:Araport11)
AT1G27940.2	protein_coding			P-glycoprotein 13;(source:Araport11)
AT1G09337.1	long_noncoding_rna			None;(source:Araport11)
AT2G15430.3	protein_coding		Encodes a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V.	DNA-directed RNA polymerase family protein;(source:Araport11)
AT1G04650.2	protein_coding		FLIP is a member of a conserved gene family with wide distribution across taxa. In Arabidopsis, it forms a complex with FIGL1 regulates meiotic crossover formation via RAD51 and DMC1.	holliday junction resolvase;(source:Araport11)
AT4G14300.2	protein_coding		Belongs to a member of the RNA-binding glycine-rich (RBG) gene superfamily.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G16020.3	protein_coding			F-box associated ubiquitination effector protein;(source:Araport11)
AT3G16020.2	protein_coding			F-box associated ubiquitination effector protein;(source:Araport11)
AT4G09245.2	novel_transcribed_region			novel transcribed region; detected in root, carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial;(source:Araport11)
AT5G02195.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G14230;(source:Araport11)
AT5G37072.2	pseudogene			pseudogene of Ribosomal protein S4 (RPS4A) family protein;(source:Araport11)
AT5G01610.2	protein_coding			hypothetical protein (Protein of unknown function, DUF538);(source:Araport11)
AT2G35900.3	protein_coding			Mal d 1-associated protein;(source:Araport11)
AT4G20240.2	protein_coding		putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 27;(source:Araport11)
AT2G00940.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G28910.3	protein_coding		Encodes a CAX-interacting protein (CXIP4). The gene product is located in the nucleus of GFP-CXIP4-expressing yeast cells. When transiently expressed in the tobacco leaves, GFP-CXIP4 locates to the nucleus as well as in discrete areas of the cytoplasm (which do not overlap with mitochondria).	CAX interacting protein 4;(source:Araport11)
AT1G07543.1	antisense_rna			Natural antisense transcript overlaps with AT1G49350;(source:Araport11)
AT2G00940.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G19590.2	protein_coding			DUF538 family protein (Protein of unknown function, DUF538);(source:Araport11)
AT1G34049.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G20920.5	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G20920.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G20920.7	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G20920.6	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G08420.1	long_noncoding_rna			None;(source:Araport11)
AT1G20920.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G42880.2	protein_coding		member of MAP Kinase	MAP kinase 20;(source:Araport11)
AT4G20260.7	protein_coding		Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and  PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels.The mRNA is cell-to-cell mobile.	plasma-membrane associated cation-binding protein 1;(source:Araport11)
AT3G01635.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G05380;(source:Araport11)
AT5G27220.4	protein_coding			Frigida-like protein;(source:Araport11)
AT1G08895.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G23995.1	protein_coding			transcription factor;(source:Araport11)
AT1G08895.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G06925.2	protein_coding		Encodes a secretory phospholipase A2 enzyme, which specifically hydrolyzes the sn-2 position of phospholipids. The enzyme has a preference towards linoleoyl acyl chain over palmitoyl acyl chain. It also has a slight preference for phosphatidylcholine over phosphatidylethanolamine.	Phospholipase A2 family protein;(source:Araport11)
AT3G56440.3	protein_coding			yeast autophagy 18 D-like protein;(source:Araport11)
AT3G56440.2	protein_coding			yeast autophagy 18 D-like protein;(source:Araport11)
AT1G06313.1	long_noncoding_rna			None;(source:Araport11)
AT4G08575.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G31850;(source:Araport11)
AT4G02460.3	protein_coding		Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination.	DNA mismatch repair protein;(source:Araport11)
AT4G02460.2	protein_coding		Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination.	DNA mismatch repair protein;(source:Araport11)
AT1G11180.3	protein_coding			Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT1G09103.1	long_noncoding_rna			None;(source:Araport11)
AT3G07770.3	protein_coding			HEAT SHOCK PROTEIN 89.1;(source:Araport11)
AT3G07770.2	protein_coding			HEAT SHOCK PROTEIN 89.1;(source:Araport11)
AT5G38000.3	protein_coding			Zinc-binding dehydrogenase family protein;(source:Araport11)
AT1G08803.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G65970;(source:Araport11)
AT4G07240.1	long_noncoding_rna			None;(source:Araport11)
AT1G08567.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G62800;(source:Araport11)
AT1G70790.3	protein_coding		C2-domain ABA-related (CAR) protein, involved in the recruitment of ABA receptors to the plasma membrane to facilitate ABA signaling. Its stability and dynamic localization is regulated by LOT1.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT4G21750.3	protein_coding		Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny.  Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene Primes spatial and temporal expression.  Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein;(source:Araport11)
AT1G61430.12	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT4G33700.2	protein_coding			CBS domain protein (DUF21);(source:Araport11)
AT1G61430.10	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61430.11	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G45180.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G24265.2	protein_coding			homeobox protein;(source:Araport11)
AT2G28470.3	protein_coding		putative beta-galactosidase (BGAL8 gene)	beta-galactosidase 8;(source:Araport11)
AT2G28470.4	protein_coding		putative beta-galactosidase (BGAL8 gene)	beta-galactosidase 8;(source:Araport11)
AT2G28470.5	protein_coding		putative beta-galactosidase (BGAL8 gene)	beta-galactosidase 8;(source:Araport11)
AT1G45180.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G24265.3	protein_coding			homeobox protein;(source:Araport11)
AT1G09060.4	protein_coding		JMJ24 is a nuclear localized JmjC domain containing protein. It has been shown to bind to transcribed regions AtSN1 and solo LTR and the promoter of SDC. JMJ24 appears to regulate basal levels of transcription of silenced loci in part by controlling methylation in heterochromatic regions.	JmjC domain protein JMJ24;(source:Araport11)
AT3G06495.1	long_noncoding_rna			None;(source:Araport11)
AT3G29760.3	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G43900.2	protein_coding		Encodes a 5-inositol-phosphate phosphatase, that, in vitro, shows activity against IP(1,4,5).	Endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT4G19420.4	protein_coding			Pectinacetylesterase family protein;(source:Araport11)
AT1G17230.3	protein_coding			Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT1G17230.2	protein_coding			Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT3G01405.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT5G07120.2	protein_coding		Encodes sorting nexin SNX2b. SNX2b is peripherally associated with membranes.  Involved in vesicular trafficking from endosomes to the vacuole.	sorting nexin 2B;(source:Araport11)
AT5G07120.3	protein_coding		Encodes sorting nexin SNX2b. SNX2b is peripherally associated with membranes.  Involved in vesicular trafficking from endosomes to the vacuole.	sorting nexin 2B;(source:Araport11)
AT3G45130.3	protein_coding			lanosterol synthase 1;(source:Araport11)
AT3G45130.2	protein_coding			lanosterol synthase 1;(source:Araport11)
AT4G08795.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G33630;(source:Araport11)
AT4G32540.2	protein_coding		Mutant has elevated levels of free IAA in dominant mutant allele; Flavin Monooxygenase-Like Enzyme; Auxin Biosynthesis	Flavin-binding monooxygenase family protein;(source:Araport11)
AT1G69280.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G09027.1	small_nucleolar_rna			None;(source:Araport11)
AT3G06475.1	long_noncoding_rna			None;(source:Araport11)
AT1G61360.4	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT3G19190.2	protein_coding		Encodes autophagy-related 2 (ATG2).The mRNA is cell-to-cell mobile. Autophagy controls guard cell ROS homeostasis  by eliminating oxidized peroxisomes, thereby allowing stomatal  opening.	autophagy 2;(source:Araport11)
AT3G06425.1	long_noncoding_rna			None;(source:Araport11)
AT5G03155.1	long_noncoding_rna			None;(source:Araport11)
AT1G61360.3	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT2G05565.1	small_nucleolar_rna			None;(source:Araport11)
AT3G46870.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G44070.2	protein_coding			Glycosyl hydrolase family 35 protein;(source:Araport11)
AT2G45400.2	protein_coding		involved in the regulation of brassinosteroid metabolic pathway	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G14370.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G26850.2	protein_coding			F-box family protein;(source:Araport11)
AT4G06000.1	long_noncoding_rna			None;(source:Araport11)
AT4G14370.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G06723.1	long_noncoding_rna			None;(source:Araport11)
AT1G55110.2	protein_coding			indeterminate(ID)-domain 7;(source:Araport11)
AT1G55110.3	protein_coding			indeterminate(ID)-domain 7;(source:Araport11)
AT4G16660.2	protein_coding			heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT1G09035.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G04557.1	long_noncoding_rna			None;(source:Araport11)
AT1G09805.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G59610.3	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G10310.2	protein_coding			P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT3G03265.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G16240;(source:Araport11)
AT2G08945.1	long_noncoding_rna			None;(source:Araport11)
AT5G59610.5	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G59610.4	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G55750.6	protein_coding			BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins);(source:Araport11)
AT4G19180.2	protein_coding		Encodes a putative apyrase involved in pollen exine pattern formation and anther dehiscence.	GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11)
AT1G55750.4	protein_coding			BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins);(source:Araport11)
AT1G55750.5	protein_coding			BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins);(source:Araport11)
AT1G55750.2	protein_coding			BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins);(source:Araport11)
AT1G55750.3	protein_coding			BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins);(source:Araport11)
AT2G38220.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G00670.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G08133.1	long_noncoding_rna			None;(source:Araport11)
AT5G37190.2	protein_coding		COP1-interacting protein 4, a nuclear-localized positive regulator of arabidopsis photomorphogenesis	COP1-interacting protein 4;(source:Araport11)
AT5G37190.3	protein_coding		COP1-interacting protein 4, a nuclear-localized positive regulator of arabidopsis photomorphogenesis	COP1-interacting protein 4;(source:Araport11)
AT1G13920.7	protein_coding			Remorin family protein;(source:Araport11)
AT1G13920.6	protein_coding			Remorin family protein;(source:Araport11)
AT1G13920.5	protein_coding			Remorin family protein;(source:Araport11)
AT1G13920.4	protein_coding			Remorin family protein;(source:Araport11)
AT1G13920.3	protein_coding			Remorin family protein;(source:Araport11)
AT1G13920.2	protein_coding			Remorin family protein;(source:Araport11)
AT2G31840.2	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT5G14020.7	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT5G14020.6	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT5G14020.5	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT2G04805.1	long_noncoding_rna			None;(source:Araport11)
AT5G14020.3	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT3G56240.3	protein_coding		CCH protein belongs to a family of eukaryotic proteins that participate in  intracellular copper homeostasis by delivering this metal to the secretory pathway; mainly located along the vascular bundles of senescing leaves and petioles as well as in stem sieve elements; hypothesized  to have a role in copper mobilization from decaying organs towards reproductive structures, as a result of metalloprotein breakdown. The plant-specific C-terminal domain of the CCH protein forms amyloid-like fibrils in vitro.	copper chaperone;(source:Araport11)
AT1G09433.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74300;(source:Araport11)
AT2G06315.1	long_noncoding_rna			None;(source:Araport11)
AT2G44830.2	protein_coding		AGCVIII kinase involved in the pulse-induced first positive phototropism. Plasma-membrane-associated element of a molecular rheostat that modulates auxin flux through developing protophloem sieve elements (PPSEs) while interacting with BRX, thereby timing PPSE differentiation. Activates PIN-mediated auxin efflux.	Protein kinase superfamily protein;(source:Araport11)
AT2G31170.3	protein_coding		Encodes the cysteinyl t-RNA synthetase SYCO ARATH (SYCO), which is expressed and required in the central cell but not in the antipodals. SYCO, localized to the mitochondria, is necessary for mitochondrial cristae integrity.  Mutation of this gene affects the lifespan of adjacent accessory cells.	Cysteinyl-tRNA synthetase, class Ia family protein;(source:Araport11)
AT2G05215.1	long_noncoding_rna			None;(source:Araport11)
AT5G03330.3	protein_coding			Cysteine proteinases superfamily protein;(source:Araport11)
AT1G05533.1	long_noncoding_rna			None;(source:Araport11)
AT5G08660.2	protein_coding			D-lactate dehydrogenase (DUF668);(source:Araport11)
AT1G48050.3	protein_coding		Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of  the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.	Ku80 family protein;(source:Araport11)
AT5G48000.6	protein_coding		Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	cytochrome P450, family 708, subfamily A, polypeptide 2;(source:Araport11)
AT5G10200.3	protein_coding			ARM-repeat/Tetratricopeptide repeat (TPR)-like protein;(source:Araport11)
AT3G56240.2	protein_coding		CCH protein belongs to a family of eukaryotic proteins that participate in  intracellular copper homeostasis by delivering this metal to the secretory pathway; mainly located along the vascular bundles of senescing leaves and petioles as well as in stem sieve elements; hypothesized  to have a role in copper mobilization from decaying organs towards reproductive structures, as a result of metalloprotein breakdown. The plant-specific C-terminal domain of the CCH protein forms amyloid-like fibrils in vitro.	copper chaperone;(source:Araport11)
AT1G21890.2	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G05113.1	long_noncoding_rna			None;(source:Araport11)
AT5G03120.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G30900.3	protein_coding			DNAse I-like superfamily protein;(source:Araport11)
AT3G03875.1	long_noncoding_rna			None;(source:Araport11)
AT2G40020.4	protein_coding			Nucleolar histone methyltransferase-related protein;(source:Araport11)
AT1G55960.2	protein_coding			Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT1G73350.4	protein_coding			ankyrin repeat protein;(source:Araport11)
AT4G05760.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G10100;(source:Araport11)
AT1G54820.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G10660.2	protein_coding		predicted to encode calcium-dependent  protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal,  to A prevented the meristoylation .  The G to A mutation decreased AtCPK2 membrane association by approximately 50%.	calmodulin-domain protein kinase cdpk isoform 2;(source:Araport11)
AT5G48000.7	protein_coding		Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	cytochrome P450, family 708, subfamily A, polypeptide 2;(source:Araport11)
AT5G65510.2	protein_coding		Encodes one of three PLETHORA transcription factors required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions.	AINTEGUMENTA-like 7;(source:Araport11)
AT1G44750.8	protein_coding		Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 11;(source:Araport11)
AT3G60050.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G41690.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G41690.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G05915.1	long_noncoding_rna			None;(source:Araport11)
AT1G03060.4	protein_coding		Encodes a WD/BEACH domain protein involved in cell morphogenesis and ribonucleoprotein particle formation.  It interacts with the P-body core component DCP2, associates to mRNA processing bodies (P-bodies), and regulates their assembly upon salt stress.	BEACH-DOMAIN HOMOLOG A1;(source:Araport11)
AT1G63480.3	protein_coding			AT hook motif DNA-binding family protein;(source:Araport11)
AT1G44750.4	protein_coding		Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 11;(source:Araport11)
AT1G44750.5	protein_coding		Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 11;(source:Araport11)
AT1G44750.6	protein_coding		Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 11;(source:Araport11)
AT1G44750.7	protein_coding		Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	purine permease 11;(source:Araport11)
AT4G03675.1	antisense_rna			Natural antisense transcript overlaps with AT4G00650;(source:Araport11)
AT1G20691.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G20690;(source:Araport11)
AT5G16960.2	protein_coding			Zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G06085.1	long_noncoding_rna			None;(source:Araport11)
AT1G04105.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G67180.7	protein_coding			zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein;(source:Araport11)
AT4G28880.2	protein_coding		Member of CKL gene family (CKL-A group)	casein kinase I-like 3;(source:Araport11)
AT1G08217.1	long_noncoding_rna			None;(source:Araport11)
AT3G55080.5	protein_coding			SET domain-containing protein;(source:Araport11)
AT3G00260.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G00780.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G23910.2	protein_coding			reverse transcriptase-like protein;(source:Araport11)
AT5G11510.3	protein_coding		Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4.  Functions in powdery mildew induced host endoreduplication at the site of infection.	myb domain protein 3r-4;(source:Araport11)
AT5G11510.4	protein_coding		Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4.  Functions in powdery mildew induced host endoreduplication at the site of infection.	myb domain protein 3r-4;(source:Araport11)
AT5G11510.5	protein_coding		Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4.  Functions in powdery mildew induced host endoreduplication at the site of infection.	myb domain protein 3r-4;(source:Araport11)
AT1G16360.2	protein_coding			LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein;(source:Araport11)
AT1G16360.3	protein_coding			LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein;(source:Araport11)
AT5G62480.3	protein_coding		Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase tau 9;(source:Araport11)
AT1G23060.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G00425.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G16360.4	protein_coding			LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein;(source:Araport11)
AT1G16360.5	protein_coding			LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein;(source:Araport11)
AT2G16970.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G16970.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G16970.4	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G16970.5	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G09120.1	miRNA_primary_transcript			microRNA ath-MIR5662 precursor;(source:Araport11)
AT2G16970.7	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G37410.2	protein_coding			hypothetical protein (DUF577);(source:Araport11)
AT1G09183.1	long_noncoding_rna			None;(source:Araport11)
AT4G06080.1	long_noncoding_rna			None;(source:Araport11)
AT4G06300.1	long_noncoding_rna			None;(source:Araport11)
AT5G51790.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G51790.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G21750.4	protein_coding		Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny.  Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene Primes spatial and temporal expression.  Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein;(source:Araport11)
AT5G51790.4	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G24200.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G10390.3	protein_coding		Encodes a plant homolog of a SWIRM domain containing protein found in histone deacetylase complexes in mammals. Lesions in FLD result in hyperacetylation of histones in FLC chromatin, up-regulation of FLC expression and extremely delayed flowering. FLD plays a key role in regulating the reproductive competence of the shoot and results in different developmental phase transitions in Arabidopsis.	protein FLOWERING locus D-like protein;(source:Araport11)
AT3G10390.2	protein_coding		Encodes a plant homolog of a SWIRM domain containing protein found in histone deacetylase complexes in mammals. Lesions in FLD result in hyperacetylation of histones in FLC chromatin, up-regulation of FLC expression and extremely delayed flowering. FLD plays a key role in regulating the reproductive competence of the shoot and results in different developmental phase transitions in Arabidopsis.	protein FLOWERING locus D-like protein;(source:Araport11)
AT5G53360.3	protein_coding			TRAF-like superfamily protein;(source:Araport11)
AT5G53360.2	protein_coding			TRAF-like superfamily protein;(source:Araport11)
AT5G07925.1	long_noncoding_rna			None;(source:Araport11)
AT3G10390.4	protein_coding		Encodes a plant homolog of a SWIRM domain containing protein found in histone deacetylase complexes in mammals. Lesions in FLD result in hyperacetylation of histones in FLC chromatin, up-regulation of FLC expression and extremely delayed flowering. FLD plays a key role in regulating the reproductive competence of the shoot and results in different developmental phase transitions in Arabidopsis.	protein FLOWERING locus D-like protein;(source:Araport11)
AT5G03145.1	miRNA_primary_transcript			microRNA ath-MIR5635a precursor;(source:Araport11)
AT2G03905.1	long_noncoding_rna			None;(source:Araport11)
AT1G68690.3	protein_coding		Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT1G68690.2	protein_coding		Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT1G73270.2	protein_coding			serine carboxypeptidase-like 6;(source:Araport11)
AT2G09395.1	antisense_rna			Natural antisense transcript overlaps with AT2G42690;(source:Araport11)
AT3G23030.2	protein_coding		auxin inducible gene expressed in the nucleus	indole-3-acetic acid inducible 2;(source:Araport11)
AT1G70510.2	protein_coding		A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.	homeobox knotted-like protein;(source:Araport11)
AT3G61320.2	protein_coding		Encodes a bestrophin-like protein (Best1). Located in the stroma thylakoid membrane. Functions as a chloride ion channel. Proposed to modulate proton motive force partitioning by mediating chloride ion influx in the thylakoid lumen. Major isoform (based on transcript analysis), redundant function with AtBest2.	Bestrophin-like protein;(source:Araport11)
AT3G61320.3	protein_coding		Encodes a bestrophin-like protein (Best1). Located in the stroma thylakoid membrane. Functions as a chloride ion channel. Proposed to modulate proton motive force partitioning by mediating chloride ion influx in the thylakoid lumen. Major isoform (based on transcript analysis), redundant function with AtBest2.	Bestrophin-like protein;(source:Araport11)
AT1G08757.1	long_noncoding_rna			None;(source:Araport11)
AT5G08320.2	protein_coding			E2F-associated phosphoprotein;(source:Araport11)
AT3G13810.4	protein_coding			indeterminate(ID)-domain 11;(source:Araport11)
AT3G61320.4	protein_coding		Encodes a bestrophin-like protein (Best1). Located in the stroma thylakoid membrane. Functions as a chloride ion channel. Proposed to modulate proton motive force partitioning by mediating chloride ion influx in the thylakoid lumen. Major isoform (based on transcript analysis), redundant function with AtBest2.	Bestrophin-like protein;(source:Araport11)
AT4G06805.1	long_noncoding_rna			None;(source:Araport11)
AT4G35930.2	protein_coding			F-box family protein;(source:Araport11)
AT4G32630.5	protein_coding			ArfGap/RecO-like zinc finger domain-containing protein;(source:Araport11)
AT4G32630.4	protein_coding			ArfGap/RecO-like zinc finger domain-containing protein;(source:Araport11)
AT4G32630.3	protein_coding			ArfGap/RecO-like zinc finger domain-containing protein;(source:Araport11)
AT1G09050.2	protein_coding			arginine-glutamic acid dipeptide repeat protein;(source:Araport11)
AT4G11830.4	protein_coding		Encodes one of three phospholipase D enzymes of the gamma class.	phospholipase D gamma 2;(source:Araport11)
AT3G24760.2	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G16555.1	protein_coding			HSP20-like chaperone;(source:Araport11)
AT3G61035.4	protein_coding			Cytochrome P450 superfamily protein;(source:Araport11)
AT3G61035.3	protein_coding			Cytochrome P450 superfamily protein;(source:Araport11)
AT3G61035.2	protein_coding			Cytochrome P450 superfamily protein;(source:Araport11)
AT1G26730.2	protein_coding			EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT4G08305.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G30660;(source:Araport11)
AT2G20180.7	protein_coding		Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark.  It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls.  Light reduces this activity in a phy-dependent manner.  The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis.  It also negatively regulates GA3 oxidase expression.	phytochrome interacting factor 3-like 5;(source:Araport11)
AT3G24740.6	protein_coding			cellulose synthase, putative (DUF1644);(source:Araport11)
AT3G24740.5	protein_coding			cellulose synthase, putative (DUF1644);(source:Araport11)
AT3G21405.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G05365.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G54020.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G05365.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G05365.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G05365.4	protein_coding			hypothetical protein;(source:Araport11)
AT2G25640.2	protein_coding			SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT1G09025.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G27906.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G27906.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G04495.1	long_noncoding_rna			None;(source:Araport11)
AT4G29550.2	protein_coding			hypothetical protein (DUF626);(source:Araport11)
AT4G29550.3	protein_coding			hypothetical protein (DUF626);(source:Araport11)
AT5G07115.1	long_noncoding_rna			None;(source:Araport11)
AT2G08020.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G24350;(source:Araport11)
AT4G19640.3	protein_coding		Encodes Ara7.	Ras-related small GTP-binding family protein;(source:Araport11)
AT4G19640.2	protein_coding		Encodes Ara7.	Ras-related small GTP-binding family protein;(source:Araport11)
AT2G08345.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G29525;(source:Araport11)
AT3G21590.3	protein_coding			Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT5G16780.2	protein_coding		Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower.	SART-1 family;(source:Araport11)
AT1G33960.2	protein_coding		Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G21590.2	protein_coding			Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT2G09575.1	long_noncoding_rna			None;(source:Araport11)
AT1G78940.3	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT1G09923.1	antisense_rna			Natural antisense transcript overlaps with AT1G79820;(source:Araport11)
AT3G58940.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT5G04475.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G05515.1	miRNA_primary_transcript			microRNA ath-MIR5997 precursor;(source:Araport11)
AT5G05035.1	miRNA_primary_transcript			microRNA ath-MIR5029 precursor;(source:Araport11)
AT3G27025.2	protein_coding		Encodes a member of the LAZY gene family that is expressed in the shoot apex.	hypothetical protein;(source:Araport11)
AT4G28820.3	protein_coding			HIT-type Zinc finger family protein;(source:Araport11)
AT3G46930.3	protein_coding		Encodes a Raf-Like Mitogen-Activated Protein Kinase Kinase Kinase Raf43. Required for tolerance to multiple abiotic stresses.	Protein kinase superfamily protein;(source:Araport11)
AT4G06095.1	long_noncoding_rna			None;(source:Araport11)
AT3G46930.5	protein_coding		Encodes a Raf-Like Mitogen-Activated Protein Kinase Kinase Kinase Raf43. Required for tolerance to multiple abiotic stresses.	Protein kinase superfamily protein;(source:Araport11)
AT3G46930.6	protein_coding		Encodes a Raf-Like Mitogen-Activated Protein Kinase Kinase Kinase Raf43. Required for tolerance to multiple abiotic stresses.	Protein kinase superfamily protein;(source:Araport11)
AT4G28820.6	protein_coding			HIT-type Zinc finger family protein;(source:Araport11)
AT4G05995.1	long_noncoding_rna			None;(source:Araport11)
AT4G39380.3	protein_coding			TSL-kinase interacting-like protein;(source:Araport11)
AT2G13100.4	protein_coding		Encodes a member of the phosphate starvation-induced glycerol-3-phosphate permease gene family: AT3G47420(G3Pp1), AT4G25220(G3Pp2), AT1G30560(G3Pp3), AT4G17550(G3Pp4) and AT2G13100(G3Pp5).The mRNA is cell-to-cell mobile.	Major facilitator superfamily protein;(source:Araport11)
AT5G13800.3	protein_coding		Encodes a pheophytinase that is involved in chlorophyll breakdown. Its transcript levels increase during senescence and pph-1 mutants have a stay-green phenotype.	pheophytinase;(source:Araport11)
AT5G13800.4	protein_coding		Encodes a pheophytinase that is involved in chlorophyll breakdown. Its transcript levels increase during senescence and pph-1 mutants have a stay-green phenotype.	pheophytinase;(source:Araport11)
AT4G39380.4	protein_coding			TSL-kinase interacting-like protein;(source:Araport11)
AT1G78960.3	protein_coding		Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.	lupeol synthase 2;(source:Araport11)
AT3G07865.1	long_noncoding_rna			None;(source:Araport11)
AT3G11230.3	protein_coding			Yippee family putative zinc-binding protein;(source:Araport11)
AT1G06777.1	long_noncoding_rna			None;(source:Araport11)
AT5G05115.3	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, light-grown seedling, flower, pollen, aerial;(source:Araport11)
AT5G02720.2	protein_coding			valine-tRNA ligase;(source:Araport11)
AT1G55270.2	protein_coding		SAGL1 is a member of a small family of KELCH domain containing proteins. Loss of function mutants show increased lignin and anthocyanin production suggesting a role in regulation of phenylpropanoid biosynthesis.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G04327.1	long_noncoding_rna			None;(source:Araport11)
AT5G00490.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00490.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G17380.3	protein_coding			jasmonate-zim-domain protein 5;(source:Araport11)
AT5G01265.1	antisense_rna			Natural antisense transcript overlaps with AT5G06410;(source:Araport11)
AT2G32930.3	protein_coding		Encodes a zinc finger protein.	zinc finger nuclease 2;(source:Araport11)
AT4G22970.3	protein_coding		Encodes a separase (ESP), homologous to human and mouse separase protein. Separase is a capase family protease required for the release of sister chromatid cohesion during meiosis and mitosis.  Arabidopsis separase contains a predicted 2Fe2S-ferredoxin domain that is not present in the proteins of other organisms. Also contains a putative EF-hand calcium binding domain. Mutant seeds exhibited embryo arrest at the globular stage. The endosperm also exhibited a weak titan-like phenotype. Transgenic plants expressing AESP RNA interference (RNAi) from the meiosis-specific DMC1 promoter exhibited alterations in chromosome segregation during meiosis I and II that resulted in polyads containing from one to eight microspores. Plays an essential role in embryo development.  Required for the removal of cohesin from meiotic chromosomes and establishment of meiotic nuclear domains. This gene was also identified through the rsw4 mutant. Lines carrying recessive, temperature-sensitive mutations exhibit reduced anisotropic growth at 30 degrees Celsius. Microtubules and cellulose microfibrils are not depleted or disoriented in the mutants at the restrictive temperature.	separase;(source:Araport11)
AT1G80940.4	protein_coding			Snf1 kinase interactor-like protein;(source:Araport11)
AT3G01850.4	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT2G32970.3	protein_coding			G1/S-specific cyclin-E protein;(source:Araport11)
AT3G02660.2	protein_coding			Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial;(source:Araport11)
AT1G80940.3	protein_coding			Snf1 kinase interactor-like protein;(source:Araport11)
AT3G48640.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G09350.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42280;(source:Araport11)
AT5G20240.2	protein_coding		Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT4G38480.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G20060.10	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT2G09690.1	small_nucleolar_rna			None;(source:Araport11)
AT3G27355.1	protein_coding			Hop-interacting protein;(source:Araport11)
AT5G01220.2	protein_coding		Encodes a UDP-sulfoquinovose:DAG sulfoquinovosyltransferase that is involved in sulfolipid biosynthesis and whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.	sulfoquinovosyldiacylglycerol 2;(source:Araport11)
AT2G37280.4	protein_coding		Encodes an ATP-binding cassette (ABC) transporter.  Expressed in the vascular tissue of primary stem.	pleiotropic drug resistance 5;(source:Araport11)
AT5G38212.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G38210;(source:Araport11)
AT5G38212.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G38210;(source:Araport11)
AT3G09255.1	long_noncoding_rna			None;(source:Araport11)
AT1G05320.8	protein_coding			myosin heavy chain, embryonic smooth protein;(source:Araport11)
AT1G05320.9	protein_coding			myosin heavy chain, embryonic smooth protein;(source:Araport11)
AT1G05320.6	protein_coding			myosin heavy chain, embryonic smooth protein;(source:Araport11)
AT1G05320.7	protein_coding			myosin heavy chain, embryonic smooth protein;(source:Araport11)
AT1G05320.4	protein_coding			myosin heavy chain, embryonic smooth protein;(source:Araport11)
AT1G69540.3	protein_coding		Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators.	AGAMOUS-like 94;(source:Araport11)
AT1G02430.2	protein_coding		A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.	ADP-ribosylation factor D1B;(source:Araport11)
AT5G10190.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G44740.3	protein_coding		Y-family DNA polymerase. Catalyses translesion synthesis in response to UV damage. Functionally interacts with PCNA2. Has a ubiquitin binding motif.	Y-family DNA polymerase H;(source:Araport11)
AT5G55950.2	protein_coding			Nucleotide/sugar transporter family protein;(source:Araport11)
AT5G55950.3	protein_coding			Nucleotide/sugar transporter family protein;(source:Araport11)
AT5G55950.4	protein_coding			Nucleotide/sugar transporter family protein;(source:Araport11)
AT4G03335.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G08415.1	long_noncoding_rna			None;(source:Araport11)
AT5G40910.7	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G57380.3	protein_coding			Glycosyltransferase family 61 protein;(source:Araport11)
AT3G50860.2	protein_coding			Clathrin adaptor complex small chain family protein;(source:Araport11)
AT2G09885.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G47380;(source:Araport11)
AT5G36930.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G08590.3	protein_coding			ORTHRUS-like protein;(source:Araport11)
AT4G02900.4	protein_coding			ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT1G08995.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G40380.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 42;(source:Araport11)
AT1G31430.2	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT4G03315.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G66420.3	protein_coding			TIM-barrel signal transduction protein;(source:Araport11)
AT5G40380.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 42;(source:Araport11)
AT4G02900.2	protein_coding			ERD (early-responsive to dehydration stress) family protein;(source:Araport11)
AT2G06585.1	long_noncoding_rna			None;(source:Araport11)
AT3G02830.2	protein_coding		Encodes a zinc finger protein that binds to PORA mRNA in vivo and recruits the Pfr form of phytochrome to the 5&#8242;-UTR of PORA mRNA to regulate translation of the mRNA.	zinc finger protein 1;(source:Araport11)
AT1G08093.1	long_noncoding_rna			None;(source:Araport11)
AT2G05812.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G05810;(source:Araport11)
AT2G40640.6	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G12203.2	protein_coding			serine carboxypeptidase-like 17;(source:Araport11)
AT3G12203.3	protein_coding			serine carboxypeptidase-like 17;(source:Araport11)
AT4G23440.2	protein_coding			Disease resistance protein (TIR-NBS class);(source:Araport11)
AT3G54360.2	protein_coding		Encodes a catalase chaperon that is essential for catalase activity. Required for multiple stress responses.	zinc ion binding protein;(source:Araport11)
AT1G08447.1	long_noncoding_rna			None;(source:Araport11)
AT3G58760.6	protein_coding			Integrin-linked protein kinase family;(source:Araport11)
AT4G35140.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G69790.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G02290.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G28840.3	protein_coding		Encodes TCP INTERACTOR-CONTAINING EAR MOTIF PROTEIN 1 (TIE1), an important repressor of CINCINNATA (CIN)-like TEOSINTE BRANCHED1/CYCLOIDEA/PCF (TCP) transcription factors, which are key for leaf development.	mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT4G28840.2	protein_coding		Encodes TCP INTERACTOR-CONTAINING EAR MOTIF PROTEIN 1 (TIE1), an important repressor of CINCINNATA (CIN)-like TEOSINTE BRANCHED1/CYCLOIDEA/PCF (TCP) transcription factors, which are key for leaf development.	mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT3G08975.1	antisense_rna			Natural antisense transcript overlaps with AT3G57710;(source:Araport11)
AT3G54480.4	protein_coding		Encodes an SKP1 interacting partner (SKIP5).	SKP1/ASK-interacting protein 5;(source:Araport11)
AT1G78635.1	protein_coding			B3 domain protein;(source:Araport11)
AT5G04875.2	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, flower, pollen;(source:Araport11)
AT3G22260.6	protein_coding			Cysteine proteinases superfamily protein;(source:Araport11)
AT4G11440.2	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G40280.2	protein_coding		encodes a beta subunit of farnesyl-trans-transferase, which is involved in meristem organization and ABA-mediated signal transduction pathway. Mutant phenotypes have been observed in meristem organization, and response to abscisic acid and drought.The mRNA is cell-to-cell mobile. Required for cuticle formation and negatively regulates Botrytis immunity.	Prenyltransferase family protein;(source:Araport11)
AT4G35300.8	protein_coding			tonoplast monosaccharide transporter2;(source:Araport11)
AT4G35300.9	protein_coding			tonoplast monosaccharide transporter2;(source:Araport11)
AT3G43220.3	protein_coding			Phosphoinositide phosphatase family protein;(source:Araport11)
AT4G35300.7	protein_coding			tonoplast monosaccharide transporter2;(source:Araport11)
AT1G07583.1	long_noncoding_rna			None;(source:Araport11)
AT2G14475.2	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT2G14475.3	pseudogene			pseudogene of hypothetical protein;(source:Araport11)
AT5G26280.3	protein_coding			TRAF-like family protein;(source:Araport11)
AT5G50440.2	protein_coding		Member of Membrin Gene Family. Encodes a Golgi-localized SNARE protein MEMB12. MEMB12 is a target of miR393b-mediated gene silencing during Pseudomonas syringae pv. Tomato infection. Loss of function of MEMB12 leads to increased exocytosis of an antimicrobial pathogenesis-related protein, PR1.	membrin 12;(source:Araport11)
AT3G61400.2	protein_coding		1-aminocyclopropane-1-carboxylate oxidase-like protein	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G61810.5	protein_coding			beta-glucosidase 45;(source:Araport11)
AT2G47700.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G32970.4	protein_coding			G1/S-specific cyclin-E protein;(source:Araport11)
AT4G34600.2	protein_coding		CAF2 is a peptide hormone expressed in the root stele that specifically binds the endodermis-expressed leucine-rich repeat receptor kinase GASSHO1 (GSO1)/SCHENGEN3 and its homolog, GSO2. Together with CAF1 it is required for formation of the casparian band.	transmembrane protein;(source:Araport11)
AT1G04703.1	long_noncoding_rna			None;(source:Araport11)
AT3G62330.2	protein_coding			Zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT1G77080.7	protein_coding		MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT2G41050.4	protein_coding			PQ-loop repeat family protein / transmembrane family protein;(source:Araport11)
AT2G41050.3	protein_coding			PQ-loop repeat family protein / transmembrane family protein;(source:Araport11)
AT2G41050.2	protein_coding			PQ-loop repeat family protein / transmembrane family protein;(source:Araport11)
AT1G05043.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G14010;(source:Araport11)
AT1G01740.3	protein_coding			kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT1G01740.4	protein_coding			kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT1G01740.5	protein_coding			kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT5G06585.1	long_noncoding_rna			None;(source:Araport11)
AT2G03895.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G01110;(source:Araport11)
AT5G02525.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G16310;(source:Araport11)
AT2G35710.4	protein_coding			Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT5G01400.3	protein_coding		Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64.	HEAT repeat-containing protein;(source:Araport11)
AT2G36330.2	protein_coding			Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G04980.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G04980.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G18640.3	protein_coding		Encodes a 3-phosphoserine phosphatase acting in the last step of serine biosynthesis within the chloroplast. Essential for embryo, pollen and root development.	3-phosphoserine phosphatase;(source:Araport11)
AT2G28970.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G06407.1	long_noncoding_rna			None;(source:Araport11)
AT1G63490.4	protein_coding		Histone demethylase belonging to the KDM5/JARID1 family which plays crucial roles in response to dehydration stress and abscisic acid (ABA). Directly binds the chromatin of OPEN STOMATA 1 (OST1) and demethylated H3K4me3 for the regulation of OST1 mRNA abundance, thereby modulating the dehydration stress response.	transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT5G18120.2	protein_coding		Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the adenosine 5 Prime-phosphosulfate reductase-like (APRL) group.	APR-like 7;(source:Araport11)
AT5G18120.3	protein_coding		Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the adenosine 5 Prime-phosphosulfate reductase-like (APRL) group.	APR-like 7;(source:Araport11)
AT3G08615.1	small_nuclear_rna			U5;(source:Araport11)
AT2G27840.3	protein_coding		Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39	histone deacetylase-related / HD-like protein;(source:Araport11)
AT1G50050.2	protein_coding			CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein;(source:Araport11)
AT4G35930.4	protein_coding			F-box family protein;(source:Araport11)
AT2G08710.1	long_noncoding_rna			None;(source:Araport11)
AT3G09945.1	long_noncoding_rna			None;(source:Araport11)
AT4G09125.1	long_noncoding_rna			None;(source:Araport11)
AT3G15430.3	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G05905.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G05900;(source:Araport11)
AT3G15430.5	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G15430.4	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G47590.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G44030.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G67430.2	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT4G38930.4	protein_coding			Ubiquitin fusion degradation UFD1 family protein;(source:Araport11)
AT3G08675.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G56470;(source:Araport11)
AT5G07365.1	long_noncoding_rna			None;(source:Araport11)
AT5G19320.2	protein_coding		Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase.	RAN GTPase activating protein 2;(source:Araport11)
AT4G01440.2	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT2G14265.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G41970.2	protein_coding		Encodes MRI, a plasma membrane-localized member of the RLCK-VIII subfamily. Preferentially expressed in both pollen tubes and root hairs. mri-knockout mutants display spontaneous pollen tube and root-hair bursting.	Protein kinase superfamily protein;(source:Araport11)
AT1G74950.2	protein_coding			TIFY domain/Divergent CCT motif family protein;(source:Araport11)
AT3G01980.5	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G00680.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G05800.1	miRNA_primary_transcript			microRNA ath-MIR5028 precursor;(source:Araport11)
AT3G06630.3	protein_coding			protein kinase family protein;(source:Araport11)
AT1G65640.2	protein_coding		Encodes a putative DegP protease.	DegP protease 4;(source:Araport11)
AT4G10600.2	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G06630.6	protein_coding			protein kinase family protein;(source:Araport11)
AT4G02985.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G25350.3	protein_coding			Phox (PX) domain-containing protein;(source:Araport11)
AT4G06180.2	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, shoot apical meristem;(source:Araport11)
AT1G09127.1	long_noncoding_rna			None;(source:Araport11)
AT4G06180.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, shoot apical meristem;(source:Araport11)
AT5G60460.2	protein_coding			Preprotein translocase Sec, Sec61-beta subunit protein;(source:Araport11)
AT4G08915.1	long_noncoding_rna			None;(source:Araport11)
AT1G48315.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G48320;(source:Araport11)
AT4G06255.1	small_nucleolar_rna			None;(source:Araport11)
AT3G05430.2	protein_coding			Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT5G44930.3	protein_coding		Encodes a putative arabinosyltransferase that is associated with arabinan biosynthesis and is not redundant with ARAD1.  The two glycosyltransferases may function in complexes held together by disulfide bridges.	Exostosin family protein;(source:Araport11)
AT3G48880.3	protein_coding		Encodes an F-box protein, SNIPER4, that regulates the turnover of MUSE13 and MUSE14, redundant TRAF proteins serving as adaptors in the SCFCRP1 complex to facilitate the turnover of nucleotide-binding domain and leucine-rich repeats (NLR) immune receptors.	RNI-like superfamily protein;(source:Araport11)
AT1G07807.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G52510;(source:Araport11)
AT1G20860.2	protein_coding		Encodes Pht1;8, a member of the Pht1 family of phosphate transporters which include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341).	phosphate transporter 1;(source:Araport11)
AT5G07570.2	protein_coding			glycine/proline-rich protein;(source:Araport11)
AT3G23200.2	protein_coding			Uncharacterized protein family (UPF0497);(source:Araport11)
AT1G61490.4	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT2G36355.4	protein_coding			RAB6-interacting golgin (DUF662);(source:Araport11)
AT3G01505.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G04790;(source:Araport11)
AT5G38020.2	protein_coding		encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus). SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G05147.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G15040;(source:Araport11)
AT3G22337.1	protein_coding			F-box/kelch-repeat protein;(source:Araport11)
AT3G28070.5	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G28070.4	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G01795.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G05880;(source:Araport11)
AT1G74070.2	protein_coding			Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT2G09945.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G47580;(source:Araport11)
AT1G70270.2	protein_coding			transcription factor;(source:Araport11)
AT1G05880.3	protein_coding		Encodes ARI12 (ARIADNE 12). ARI12 belongs to a family of ?RING between RING fingers Prime (RBR) domain proteins with E3 ligase activity. Expression of ARI12 is induced by UV-B exposure.	RING/U-box superfamily protein;(source:Araport11)
AT2G34450.4	protein_coding			HMG-box (high mobility group) DNA-binding family protein;(source:Araport11)
AT1G06973.1	long_noncoding_rna			None;(source:Araport11)
AT2G23390.2	protein_coding			acyl-CoA;(source:Araport11)
AT2G40260.2	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT2G32620.4	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase-like B;(source:Araport11)
AT1G07443.1	novel_transcribed_region			novel transcribed region; detected in carpel, leaf, light-grown seedling, flower;(source:Araport11)
AT2G32620.2	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase-like B;(source:Araport11)
AT2G32620.3	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase-like B;(source:Araport11)
AT5G59500.2	protein_coding			protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase;(source:Araport11)
AT4G17990.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G54110.2	protein_coding			Membrane fusion protein Use1;(source:Araport11)
AT4G27845.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G43880.2	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT5G05545.1	long_noncoding_rna			None;(source:Araport11)
AT1G05860.2	protein_coding			INO80 complex subunit D-like protein;(source:Araport11)
AT3G53720.2	protein_coding		member of Putative Na+/H+ antiporter family.  Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells.	cation/H+ exchanger 20;(source:Araport11)
AT3G00190.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G49410.2	protein_coding			Transcription factor IIIC, subunit 5;(source:Araport11)
AT1G35850.2	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.	pumilio 17;(source:Araport11)
AT4G17310.17	protein_coding			hypothetical protein;(source:Araport11)
AT3G52840.2	protein_coding			beta-galactosidase 2;(source:Araport11)
AT4G17310.11	protein_coding			hypothetical protein;(source:Araport11)
AT4G17310.10	protein_coding			hypothetical protein;(source:Araport11)
AT3G49410.4	protein_coding			Transcription factor IIIC, subunit 5;(source:Araport11)
AT4G17310.12	protein_coding			hypothetical protein;(source:Araport11)
AT4G16700.2	protein_coding		Encodes a mitochondrial phosphatidylserine decarboxylase. Expressed mainly in roots and flowers.	phosphatidylserine decarboxylase 1;(source:Araport11)
AT1G48420.2	protein_coding		Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3.  Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. There is conflicting evidence on its 1-aminocyclopropane-1-carboxylate deaminase activity. Involved in regulating ethylene levels.	D-cysteine desulfhydrase;(source:Araport11)
AT2G09440.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G43320;(source:Araport11)
AT2G09440.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G43320;(source:Araport11)
AT1G25175.5	other_rna			None;(source:Araport11)
AT4G26300.2	protein_coding			Arginyl-tRNA synthetase, class Ic;(source:Araport11)
AT4G26300.3	protein_coding			Arginyl-tRNA synthetase, class Ic;(source:Araport11)
AT1G33945.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G01280.2	protein_coding			Cyclin/Brf1-like TBP-binding protein;(source:Araport11)
AT2G01280.3	protein_coding			Cyclin/Brf1-like TBP-binding protein;(source:Araport11)
AT4G26300.4	protein_coding			Arginyl-tRNA synthetase, class Ic;(source:Araport11)
AT4G26300.5	protein_coding			Arginyl-tRNA synthetase, class Ic;(source:Araport11)
AT1G09660.3	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT5G09665.1	long_noncoding_rna			None;(source:Araport11)
AT5G66100.2	protein_coding		Encodes a LAM domain containing protein that is involved in leaf senescence.	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT1G11300.2	protein_coding		The annotation for At1g11300 in TAIR10 is incorrect. This locus has been split into two At1g11300 (symbol: EGM1) and At1g11305 (symbol: EGM2) (Olivier Loudet, personal communication, 2013-04-03). See Comment field for revised annotation.	G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT3G53270.9	protein_coding			Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein;(source:Araport11)
AT5G49430.2	protein_coding			WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein;(source:Araport11)
AT4G31480.9	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT1G74440.2	protein_coding			ER membrane protein, putative (DUF962);(source:Araport11)
AT1G61560.8	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT1G06963.1	long_noncoding_rna			None;(source:Araport11)
AT5G43990.9	protein_coding		Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT4G08065.1	long_noncoding_rna			None;(source:Araport11)
AT4G31480.3	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT1G51380.2	protein_coding			DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT1G61560.6	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT1G61560.7	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT4G31480.7	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT1G61560.5	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT4G11543.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G10910.2	protein_coding		Member of the P subfamily of PRR proteins. Loss of function results in defects in abnormal plastid RNA edit and chloroplast biogenesis	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G35040.4	protein_coding		Basic-region leucine zipper  (bZIP19) transcription factor involved in the adaptation to zinc deficiency. Binds ZDRE motifs.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT5G00810.1	long_noncoding_rna			None;(source:Araport11)
AT1G69710.2	protein_coding			Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT3G20330.2	protein_coding		encodes aspartate carbamoyltransferase catalyzing the second step in the de novo pyrimidine ribonucleotide biosynthesis	PYRIMIDINE B;(source:Araport11)
AT3G46270.2	protein_coding			receptor protein kinase-like protein;(source:Araport11)
AT4G35040.3	protein_coding		Basic-region leucine zipper  (bZIP19) transcription factor involved in the adaptation to zinc deficiency. Binds ZDRE motifs.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT4G35040.2	protein_coding		Basic-region leucine zipper  (bZIP19) transcription factor involved in the adaptation to zinc deficiency. Binds ZDRE motifs.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT3G58415.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G30990.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT4G37940.4	protein_coding		encodes a MADS box protein, highly expressed in the root.	AGAMOUS-like 21;(source:Araport11)
AT4G05435.1	long_noncoding_rna			None;(source:Araport11)
AT2G08220.1	long_noncoding_rna			None;(source:Araport11)
AT1G52660.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G59200.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT5G56260.3	protein_coding			Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase;(source:Araport11)
AT3G02070.2	protein_coding			Cysteine proteinases superfamily protein;(source:Araport11)
AT1G71930.2	protein_coding		Encodes a NAC-domain transcription factor with transcriptional activation activity that is involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.	vascular related NAC-domain protein 7;(source:Araport11)
AT5G02695.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G17360;(source:Araport11)
AT5G41220.3	protein_coding		Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase THETA 3;(source:Araport11)
AT2G21195.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G48175.6	protein_coding			Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT2G07255.1	long_noncoding_rna			None;(source:Araport11)
AT3G62730.2	protein_coding			desiccation-like protein;(source:Araport11)
AT1G04423.1	miRNA_primary_transcript			microRNA ath-MIR5656 precursor;(source:Araport11)
AT1G07513.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G48960;(source:Araport11)
AT1G64385.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G64010.2	protein_coding			Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT5G07405.1	small_nuclear_rna			U4;(source:Araport11)
AT4G08935.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G34131;(source:Araport11)
AT1G06053.1	long_noncoding_rna			None;(source:Araport11)
AT2G43400.2	protein_coding		Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods.	electron-transfer flavoprotein:ubiquinone oxidoreductase;(source:Araport11)
AT3G01395.1	long_noncoding_rna			None;(source:Araport11)
AT2G39130.2	protein_coding			Transmembrane amino acid transporter family protein;(source:Araport11)
AT2G38460.6	protein_coding		Encodes IRON REGULATED1 (IREG1/FPN1), one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.	iron regulated 1;(source:Araport11)
AT5G07055.1	miRNA_primary_transcript			microRNA ath-MIR5665 precursor;(source:Araport11)
AT1G09093.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, dark-grown seedling, light-grown seedling, pollen;(source:Araport11)
AT3G09745.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G62090;(source:Araport11)
AT3G32380.1	protein_coding			Gag-Pol polyprotein/retrotransposon;(source:Araport11)
AT2G07661.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G06160.3	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G06160.5	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G06160.4	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT2G16900.6	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G01430.3	protein_coding		Encodes a plasma membrane-localized amino acid transporter likely involved in amino acid export in the developing seed.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G15220.2	protein_coding			Ribosomal protein L27 family protein;(source:Araport11)
AT1G34844.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G34842;(source:Araport11)
AT2G47120.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G64830.3	protein_coding			programmed cell death 2 C-terminal domain-containing protein;(source:Araport11)
AT5G60600.4	protein_coding		Encodes a chloroplast-localized  hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP).  The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP<sup>+</sup> reductase.The mRNA is cell-to-cell mobile.	4-hydroxy-3-methylbut-2-enyl diphosphate synthase;(source:Araport11)
AT3G57060.3	protein_coding			binding protein;(source:Araport11)
AT5G03180.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G03180.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G08370.1	small_nucleolar_rna			None;(source:Araport11)
AT4G01450.4	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G26020.8	protein_coding		Encodes protein phosphatase 2A (PP2A) B Primeeta subunit.  Targeted to nucleus and cytosol.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT5G38865.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G38865.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G38865.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G75890.3	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G26020.5	protein_coding		Encodes protein phosphatase 2A (PP2A) B Primeeta subunit.  Targeted to nucleus and cytosol.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT3G26020.6	protein_coding		Encodes protein phosphatase 2A (PP2A) B Primeeta subunit.  Targeted to nucleus and cytosol.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT3G26020.7	protein_coding		Encodes protein phosphatase 2A (PP2A) B Primeeta subunit.  Targeted to nucleus and cytosol.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT2G21400.4	protein_coding		A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	SHI-related sequence3;(source:Araport11)
AT2G21400.2	protein_coding		A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	SHI-related sequence3;(source:Araport11)
AT2G02390.4	protein_coding		Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the  oxidant tert-butylhydroperoxide.  It functions in vitro as a maleylacetoacetate isomerase and is likely to be involved in tyrosine catabolism.	glutathione S-transferase zeta 1;(source:Araport11)
AT4G33330.3	protein_coding		Encodes a glucuronyltransferase responsible  for the addition of GlcA residues onto xylan and for secondary wall deposition.	plant glycogenin-like starch initiation protein 3;(source:Araport11)
AT3G05955.1	long_noncoding_rna			None;(source:Araport11)
AT4G33330.5	protein_coding		Encodes a glucuronyltransferase responsible  for the addition of GlcA residues onto xylan and for secondary wall deposition.	plant glycogenin-like starch initiation protein 3;(source:Araport11)
AT4G33330.4	protein_coding		Encodes a glucuronyltransferase responsible  for the addition of GlcA residues onto xylan and for secondary wall deposition.	plant glycogenin-like starch initiation protein 3;(source:Araport11)
AT1G04433.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G05835;(source:Araport11)
AT2G26800.5	protein_coding		Mutant has increased seed ile, leu and val as well as his and arg.	Aldolase superfamily protein;(source:Araport11)
AT3G33530.4	protein_coding			Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT1G26930.2	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT4G18960.4	protein_coding		Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT4G18960.3	protein_coding		Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT3G05600.2	protein_coding		Encodes a cytosolic epoxide hydrolase capable of acting on 9,10-epoxystearic acid and on 12,13- epoxyoctadec-9-enoic acid that is involved in the synthesis of poly-hydroxylated cutin monomers.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G66960.2	protein_coding			Terpenoid cyclases family protein;(source:Araport11)
AT1G05143.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G15030;(source:Araport11)
AT5G09035.1	long_noncoding_rna			None;(source:Araport11)
AT3G07485.1	other_rna			None;(source:Araport11)
AT1G55947.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT5G56560.2	protein_coding			FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G65480.2	protein_coding		FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). Together with TSF, it plays an antagonistic role to TFL1 in the determination of inflorescence meristem identity. FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.	PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11)
AT1G55803.1	protein_coding			ferredoxin-fold anticodon-binding domain protein;(source:Araport11)
AT3G19780.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G23250.2	protein_coding			Caleosin-related family protein;(source:Araport11)
AT5G45210.5	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G41445.4	protein_coding			agamous-like MADS-box protein;(source:Araport11)
AT3G07465.1	long_noncoding_rna			None;(source:Araport11)
AT2G13910.3	pseudogene			pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G13910.2	pseudogene			pseudogene of Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT4G25860.2	protein_coding			OSBP(oxysterol binding protein)-related protein 4A;(source:Araport11)
AT2G38920.5	protein_coding			SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein;(source:Araport11)
AT1G53875.1	protein_coding			LURP-one-like protein;(source:Araport11)
AT1G66960.4	protein_coding			Terpenoid cyclases family protein;(source:Araport11)
AT3G58760.4	protein_coding			Integrin-linked protein kinase family;(source:Araport11)
AT1G05470.2	protein_coding		Encodes an inositol polyphosphate 5 Prime phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays.	DNAse I-like superfamily protein;(source:Araport11)
AT2G43190.5	protein_coding		Encodes a protein involved in rRNA but not tRNA maturation.	ribonuclease P family protein;(source:Araport11)
AT5G20720.4	protein_coding		Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES.	chaperonin 20;(source:Araport11)
AT1G05523.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G20070;(source:Araport11)
AT1G63080.2	protein_coding		Transacting siRNA generating locus. Is targeted by TAS2-derived ta-siR2140 for cleavage.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G58760.2	protein_coding			Integrin-linked protein kinase family;(source:Araport11)
AT3G09895.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G63130;(source:Araport11)
AT2G07875.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G23090;(source:Araport11)
AT5G59662.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G59660;(source:Araport11)
AT3G58760.3	protein_coding			Integrin-linked protein kinase family;(source:Araport11)
AT1G51890.5	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G51890.4	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G66070.3	protein_coding		E3 ubiquitin ligase that functions in negative regulation of ABA signaling.	RING/U-box superfamily protein;(source:Araport11)
AT2G38920.4	protein_coding			SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein;(source:Araport11)
AT5G66070.5	protein_coding		E3 ubiquitin ligase that functions in negative regulation of ABA signaling.	RING/U-box superfamily protein;(source:Araport11)
AT5G51330.2	protein_coding		Encodes novel protein involved in sister chromatid cohesion and meiotic chromosome organization during both male and female meiosis.  Gene has two alternate transcripts which produce two similar proteins, one 57 aa shorter than the other.	SWITCH1;(source:Araport11)
AT1G51890.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G26020.3	protein_coding			4/1 protein short form protein;(source:Araport11)
AT4G15396.4	protein_coding			cytochrome P450, family 702, subfamily A, polypeptide 6;(source:Araport11)
AT3G26922.5	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT3G26922.4	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT3G26922.3	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT3G26922.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT4G15396.3	protein_coding			cytochrome P450, family 702, subfamily A, polypeptide 6;(source:Araport11)
AT4G15396.2	protein_coding			cytochrome P450, family 702, subfamily A, polypeptide 6;(source:Araport11)
AT4G28290.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G37478.3	protein_coding			TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT1G08177.1	long_noncoding_rna			None;(source:Araport11)
AT3G54740.3	protein_coding			zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT5G37478.2	protein_coding			TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT5G45210.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G66050.4	protein_coding			Wound-responsive family protein;(source:Araport11)
AT5G66050.3	protein_coding			Wound-responsive family protein;(source:Araport11)
AT1G05167.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, receptacle, dark-grown seedling, light-grown seedling, flower, pollen;(source:Araport11)
AT3G54740.5	protein_coding			zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT1G31360.5	protein_coding		Encodes a (d)NTP-dependent 3 Prime->5 Prime DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.	RECQ helicase L2;(source:Araport11)
AT1G31360.4	protein_coding		Encodes a (d)NTP-dependent 3 Prime->5 Prime DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.	RECQ helicase L2;(source:Araport11)
AT1G31360.7	protein_coding		Encodes a (d)NTP-dependent 3 Prime->5 Prime DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.	RECQ helicase L2;(source:Araport11)
AT1G31360.6	protein_coding		Encodes a (d)NTP-dependent 3 Prime->5 Prime DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.	RECQ helicase L2;(source:Araport11)
AT3G05325.1	small_nucleolar_rna			None;(source:Araport11)
AT3G54740.6	protein_coding			zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT5G48610.3	protein_coding			myb-like protein X;(source:Araport11)
AT5G48610.2	protein_coding			myb-like protein X;(source:Araport11)
AT4G24790.3	protein_coding			AAA-type ATPase family protein;(source:Araport11)
AT3G08070.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G49710;(source:Araport11)
AT1G43040.2	protein_coding			SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G04665.1	long_noncoding_rna			None;(source:Araport11)
AT1G31360.8	protein_coding		Encodes a (d)NTP-dependent 3 Prime->5 Prime DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.	RECQ helicase L2;(source:Araport11)
AT4G24790.5	protein_coding			AAA-type ATPase family protein;(source:Araport11)
AT4G24790.4	protein_coding			AAA-type ATPase family protein;(source:Araport11)
AT1G32740.2	protein_coding			SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT3G08150.1	miRNA_primary_transcript			microRNA ath-MIR8167c precursor;(source:Araport11)
AT2G37450.3	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G29040.5	protein_coding			50S ribosomal protein L34;(source:Araport11)
AT1G32740.4	protein_coding			SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT1G80170.2	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT2G35160.3	protein_coding		Encodes SU(var)3-9 homologue 5 (SUVH5).  SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.	SU(VAR)3-9 homolog 5;(source:Araport11)
AT1G06337.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G30475;(source:Araport11)
AT2G04595.1	long_noncoding_rna			None;(source:Araport11)
AT5G45276.2	pseudogene			pseudogene of Frigida-like protein;(source:Araport11)
AT3G19950.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G19950.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G04221.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G04220;(source:Araport11)
AT4G04221.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G04220;(source:Araport11)
AT4G04221.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G04220;(source:Araport11)
AT4G04221.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G04220;(source:Araport11)
AT4G04221.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G04220;(source:Araport11)
AT1G07753.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G51550;(source:Araport11)
AT4G04614.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G08907.1	long_noncoding_rna			None;(source:Araport11)
AT2G24140.4	protein_coding			myosin-J heavy chain-like protein (Protein of unknown function, DUF593);(source:Araport11)
AT5G00335.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00335.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G06703.1	long_noncoding_rna			None;(source:Araport11)
AT1G14450.2	protein_coding			NADH dehydrogenase (ubiquinone)s;(source:Araport11)
AT4G09960.6	protein_coding		Encodes a MADS box transcription factor expressed in the carpel and ovules. Plays a maternal role in fertilization and seed development. Controls the structure and mechanical properties of the seed coat.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G09947.1	small_nuclear_rna			U4;(source:Araport11)
AT1G31555.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G13660.2	protein_coding		Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems.  Shows preference for pinoresinol and not lariciresinol.The mRNA is cell-to-cell mobile.	pinoresinol reductase 2;(source:Araport11)
AT3G09185.1	long_noncoding_rna			None;(source:Araport11)
AT1G05447.1	long_noncoding_rna			None;(source:Araport11)
AT1G16705.3	protein_coding			p300/CBP acetyltransferase-related protein-like protein;(source:Araport11)
AT5G00730.1	long_noncoding_rna			None;(source:Araport11)
AT2G20340.2	protein_coding		Encodes an aromatic aldehyde synthase (AtAAS), which catalyzes the in vitro conversion of phenylalanine and 3,4-dihydroxy-L-phenylalanine to phenylacetaldehyde and dopaldehyde, respectively.The mRNA is cell-to-cell mobile.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT5G60335.3	protein_coding		Encodes the mitochondria-localized 3-hydroxyacyl-acyl carrier protein (ACP) dehydratase (mtHD) component of the mitochondrial fatty acid synthase (mtFAS) system. It catalyzes the third of the four  iterative reactions that constitute the mtFAS cycle. Additionally, it supports the assembly of lipid A-like molecules and has an unexpected function in maintaining the morphology of  chloroplastic starch granules.	hydroxyacyl-thioester dehydratase type-like protein;(source:Araport11)
AT5G60335.2	protein_coding		Encodes the mitochondria-localized 3-hydroxyacyl-acyl carrier protein (ACP) dehydratase (mtHD) component of the mitochondrial fatty acid synthase (mtFAS) system. It catalyzes the third of the four  iterative reactions that constitute the mtFAS cycle. Additionally, it supports the assembly of lipid A-like molecules and has an unexpected function in maintaining the morphology of  chloroplastic starch granules.	hydroxyacyl-thioester dehydratase type-like protein;(source:Araport11)
AT1G07380.2	protein_coding		Encodes a neutral ceramidase that is involved in sphingolipid homeostasis and responses to oxidative stress.	Neutral/alkaline non-lysosomal ceramidase;(source:Araport11)
AT4G02865.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G14342.2	protein_coding			Splicing factor 3B subunit 5/RDS3 complex subunit 10;(source:Araport11)
AT4G31890.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT1G55870.3	protein_coding		Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA. Functions with AGS1 to regulate the poly(A) status of mitochondrial mRNA.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G01830.5	protein_coding		Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane	CHASE domain containing histidine kinase protein;(source:Araport11)
AT1G55870.4	protein_coding		Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA. Functions with AGS1 to regulate the poly(A) status of mitochondrial mRNA.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G42010.2	protein_coding		phospholipase D (PLDbeta)	phospholipase D beta 1;(source:Araport11)
AT5G08490.7	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G38780.9	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT2G07800.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G24150.2	protein_coding		heptahelical transmembrane  protein HHP3	heptahelical protein 3;(source:Araport11)
AT1G80360.4	protein_coding		Encodes a methionine-specific aminotransferase that uses the ethylene biosynthetic intermediate methionine as an  amino donor and the auxin biosynthetic intermediate indole-3-pyruvic acid as an amino acceptor to produce L-tryptophan  and 2-oxo-4-methylthiobutyric acid. These actions allow VAS1 to coordinate both auxin and ethylene biosynthesis.  It functions downstream of TAA1/SAV3 but upstream of YUCs to negatively modulate IAA biosynthesis directly by altering the 3-IPA pool.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT1G24706.9	protein_coding		Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	THO2;(source:Araport11)
AT1G24706.8	protein_coding		Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	THO2;(source:Araport11)
AT1G24706.7	protein_coding		Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	THO2;(source:Araport11)
AT1G24706.6	protein_coding		Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	THO2;(source:Araport11)
AT1G24706.5	protein_coding		Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	THO2;(source:Araport11)
AT1G24706.4	protein_coding		Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	THO2;(source:Araport11)
AT1G24706.3	protein_coding		Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	THO2;(source:Araport11)
AT2G38780.6	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT4G03620.2	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT2G38780.4	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT5G14850.3	protein_coding		Encodes a putative mannosyltransferase homolog to human PIG-B and yeast GPI10, both of which are involved in the biosynthesis of glycosylphosphatidylinositol (GPI) anchors.  Disruption of the gene affects COBRA-LIKE10 localization, a GPI-anchored protein (GPI-AP) important for pollen tube growth and guidance.	Alg9-like mannosyltransferase family;(source:Araport11)
AT3G04435.1	long_noncoding_rna			None;(source:Araport11)
AT5G37570.2	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT3G01815.1	long_noncoding_rna			None;(source:Araport11)
AT1G11130.2	protein_coding		Encodes an atypical receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root but whose kinase activity is not essential for its function in vivo. Regulates expression of GLABRA2, CAPRICE, WEREWOLF, and ENHANCER OF GLABRA3. Required  for floral organ shape, the development of the outer integument of  ovules, and stem development. Regulates cell shape and cell division planes  in the L2 layer of floral meristems and the L1-derived outer  integument of ovules. Controls specification of epidermal root hairs. Participates in the coordination of cell morphogenesis  between cell layers during floral development.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G00550.2	protein_coding		encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.	digalactosyl diacylglycerol deficient 2;(source:Araport11)
AT1G05507.1	long_noncoding_rna			None;(source:Araport11)
AT5G08490.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G18203.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53970.2	protein_coding			GDSL esterase/lipase-like protein;(source:Araport11)
AT5G08490.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G15970.2	protein_coding			DNA glycosylase superfamily protein;(source:Araport11)
AT1G17285.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G14225.2	protein_coding		Contains lipase signature motif and GDSL domain.	GDSL-motif lipase 4;(source:Araport11)
AT2G25350.4	protein_coding			Phox (PX) domain-containing protein;(source:Araport11)
AT4G38420.2	protein_coding			SKU5 similar 9;(source:Araport11)
AT1G55180.2	protein_coding		member of C2-PLD. subfamily Represents a phospholipase D (PLD) gene with four exons, hence it is a member of the alpha class.  Its amino acid sequence is quite different from other PLDs, therefore it might possess unique structural and/or catalytic properties.	phospholipase D alpha 4;(source:Araport11)
AT4G08245.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G29900;(source:Araport11)
AT1G67120.2	protein_coding		Represents a homolog of the yeast MDN gene, which encodes a non-ribosomal protein involved in the maturation and assembly of the 60S ribosomal subunit. In Arabidopsis, it is essential for female gametogenesis progression.	midasin-like protein;(source:Araport11)
AT4G08245.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G29900;(source:Araport11)
AT5G56320.3	protein_coding		member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin A14;(source:Araport11)
AT4G06055.1	long_noncoding_rna			None;(source:Araport11)
AT1G78040.3	protein_coding			Pollen Ole e 1 allergen and extensin family protein;(source:Araport11)
AT5G00370.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G04260.2	protein_coding			Bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT1G04823.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G10850;(source:Araport11)
AT1G79640.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G06965.1	long_noncoding_rna			None;(source:Araport11)
AT1G06423.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G31200;(source:Araport11)
AT3G09755.1	long_noncoding_rna			None;(source:Araport11)
AT3G21880.3	protein_coding		COL12 is a substrate of the COP1/SPA E3 ubiquitin ligase. It is degraded in darkness and stabilized by white, red and blue light. Overexpression results in decreased apical dominance, increased branching and delayed flowering in long days. The latter phenotype is due to reduced levels of FT and dependent on the presence of CO (PMID:29187570).	B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT3G21880.2	protein_coding		COL12 is a substrate of the COP1/SPA E3 ubiquitin ligase. It is degraded in darkness and stabilized by white, red and blue light. Overexpression results in decreased apical dominance, increased branching and delayed flowering in long days. The latter phenotype is due to reduced levels of FT and dependent on the presence of CO (PMID:29187570).	B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT2G08015.1	miRNA_primary_transcript			microRNA ath-MIR5639 precursor;(source:Araport11)
AT1G28370.2	protein_coding		encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	ERF domain protein 11;(source:Araport11)
AT5G06325.1	long_noncoding_rna			None;(source:Araport11)
AT1G60610.5	protein_coding			SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT1G43020.5	protein_coding			electron protein, putative (Protein of unknown function, DUF547);(source:Araport11)
AT1G04043.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G01720;(source:Araport11)
AT1G60610.4	protein_coding			SBP (S-ribonuclease binding protein) family protein;(source:Araport11)
AT4G03535.1	long_noncoding_rna			None;(source:Araport11)
AT4G31170.10	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G55230.3	protein_coding		Binds and bundles microtubules. Plays a role in stabilizing anti-parallel microtubules  in the central spindle at anaphase to early cytokinesis but is not essential at the midline of the phragmoplast at later stages. The timing with which the MAP65-1 was targeted to  the spindle appears to be regulated by a phosphorylation sensitive  switch. Enhances microtubule polymerization, promotes nucleation and stabilizes microtubules against cold treatment and dilution.	microtubule-associated proteins 65-1;(source:Araport11)
AT1G76710.4	protein_coding			SET domain group 26;(source:Araport11)
AT2G08695.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G34910;(source:Araport11)
AT5G11530.2	protein_coding		Involved in regulating reproductive development	embryonic flower 1 (EMF1);(source:Araport11)
AT1G33890.2	protein_coding			Avirulence induced gene (AIG1) family protein;(source:Araport11)
AT1G08287.1	miRNA_primary_transcript			microRNA ath-MIR5647 precursor;(source:Araport11)
AT3G63220.3	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT2G39760.4	protein_coding		Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB/POZ/MATH-domains containing protein;(source:Araport11)
AT5G41620.4	protein_coding			intracellular protein transporter USO1-like protein;(source:Araport11)
AT1G34260.3	protein_coding		Encodes a protein that is predicted to act as a phosphatidylinositol-3P 5-kinase, but, because it lacks a FYVE domain, it is unlikely to be efficiently targeted to membranes containing the porposed phosphatidylinositol-3P substrate. Therefore, its molecular function remains unknown.The mRNA is cell-to-cell mobile.	FORMS APLOID AND BINUCLEATE CELLS 1A;(source:Araport11)
AT1G34260.2	protein_coding		Encodes a protein that is predicted to act as a phosphatidylinositol-3P 5-kinase, but, because it lacks a FYVE domain, it is unlikely to be efficiently targeted to membranes containing the porposed phosphatidylinositol-3P substrate. Therefore, its molecular function remains unknown.The mRNA is cell-to-cell mobile.	FORMS APLOID AND BINUCLEATE CELLS 1A;(source:Araport11)
AT2G07634.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G14720.2	protein_coding		PPD2 (and its paralog, PPD1) encode plant-specific putative DNA-binding proteins.  Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth.	TIFY domain/Divergent CCT motif family protein;(source:Araport11)
AT4G12990.9	protein_coding			transmembrane protein;(source:Araport11)
AT3G05815.1	long_noncoding_rna			None;(source:Araport11)
AT5G08290.2	protein_coding		Encodes Dim1 homolog.	mRNA splicing factor, thioredoxin-like U5 snRNP;(source:Araport11)
AT5G42930.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G67040.2	protein_coding			DnaA initiator-associating protein;(source:Araport11)
AT1G27535.1	protein_coding			phosphatidylinositol 3/4-kinase;(source:Araport11)
AT4G08985.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G34410;(source:Araport11)
AT4G13330.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G05157.1	novel_transcribed_region			novel transcribed region; detected in carpel, root apical meristem, leaf, dark-grown seedling, flower, pollen, aerial;(source:Araport11)
AT3G53240.2	protein_coding			receptor like protein 45;(source:Araport11)
AT5G13240.3	protein_coding		Global repressor of RNA polymerase III (Pol III). Maf1 repressor activity is critical for plant survival during environmental stresses, and is regulated by its phosphorylation/dephosphorylation through the activity of TOR and PP4/PP2A phosphatases.	transcription regulator;(source:Araport11)
AT1G07197.1	long_noncoding_rna			None;(source:Araport11)
AT5G39790.3	protein_coding		Encodes a chloroplast localized protein that is involved in protein translocation and starch metabolism. PTST helps localize GBSS to the starch granules where GBSS functions in amylose biosynthesis.	PROTEIN TARGETING TO STARCH (PTST);(source:Araport11)
AT5G53220.5	protein_coding			hypothetical protein;(source:Araport11)
AT1G09527.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G75090;(source:Araport11)
AT1G16560.5	protein_coding			Per1-like family protein;(source:Araport11)
AT2G07055.1	long_noncoding_rna			None;(source:Araport11)
AT2G20320.2	protein_coding			DENN (AEX-3) domain-containing protein;(source:Araport11)
AT2G01650.2	protein_coding		encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.	plant UBX domain-containing protein 2;(source:Araport11)
AT3G52180.4	protein_coding		Encodes a plant-specific glucan phosphatase that contains a noncatalytic  carbohydrate-binding module as well as a dual specificity protein phosphatase domain. SEX4 can dephosphorylate C6- and C3-glucosyl residues on native starch grains and related maltodextrin compounds in vitro. This protein interacts with the plant SnRK AKIN11, binds starch, and is localized in the chloroplast. sex4 mutants have elevated levels of starch.	dual specificity protein phosphatase (DsPTP1) family protein;(source:Araport11)
AT1G14090.2	pseudogene			pseudogene of Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G24040.2	protein_coding			Low temperature and salt responsive protein family;(source:Araport11)
AT5G13565.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G08810.3	protein_coding		putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.	myb domain protein 60;(source:Araport11)
AT1G48725.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G60215.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G05735.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G09810;(source:Araport11)
AT4G03555.1	long_noncoding_rna			None;(source:Araport11)
AT2G43500.4	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT5G58610.11	protein_coding			PHD finger transcription factor;(source:Araport11)
AT3G00650.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G48310.4	protein_coding			chromatin remodeling factor18;(source:Araport11)
AT5G05465.1	long_noncoding_rna			None;(source:Araport11)
AT1G51870.2	protein_coding			protein kinase family protein;(source:Araport11)
AT1G08973.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G68290;(source:Araport11)
AT1G48310.3	protein_coding			chromatin remodeling factor18;(source:Araport11)
AT4G23250.2	protein_coding			cysteine-rich receptor-like protein kinase 17;(source:Araport11)
AT5G01470.6	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G48370.2	protein_coding		Arabidopsis thaliana metal-nicotianamine transporter YSL4	YELLOW STRIPE like 8;(source:Araport11)
AT3G00995.1	long_noncoding_rna			None;(source:Araport11)
AT2G45950.3	protein_coding			SKP1-like 20;(source:Araport11)
AT5G14500.2	protein_coding			aldose 1-epimerase family protein;(source:Araport11)
AT1G51860.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G06010.1	small_nucleolar_rna			None;(source:Araport11)
AT5G53020.6	protein_coding			Ribonuclease P protein subunit P38-like protein;(source:Araport11)
AT5G53020.7	protein_coding			Ribonuclease P protein subunit P38-like protein;(source:Araport11)
AT5G53020.4	protein_coding			Ribonuclease P protein subunit P38-like protein;(source:Araport11)
AT5G53020.5	protein_coding			Ribonuclease P protein subunit P38-like protein;(source:Araport11)
AT5G53020.2	protein_coding			Ribonuclease P protein subunit P38-like protein;(source:Araport11)
AT5G53020.3	protein_coding			Ribonuclease P protein subunit P38-like protein;(source:Araport11)
AT3G29639.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G16950.4	protein_coding		Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G07005.1	miRNA_primary_transcript			microRNA ath-MIR1887 precursor;(source:Araport11)
AT1G07327.1	long_noncoding_rna			None;(source:Araport11)
AT4G11680.2	protein_coding			Zinc finger, C3HC4 type (RING finger) family protein;(source:Araport11)
AT1G22020.2	protein_coding		Encodes a putative serine hydroxymethyltransferase.	serine hydroxymethyltransferase 6;(source:Araport11)
AT4G27120.3	protein_coding			DDRGK domain protein;(source:Araport11)
AT5G53020.8	protein_coding			Ribonuclease P protein subunit P38-like protein;(source:Araport11)
AT5G53020.9	protein_coding			Ribonuclease P protein subunit P38-like protein;(source:Araport11)
AT5G59350.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G53180.3	protein_coding		Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	polypyrimidine tract-binding protein 2;(source:Araport11)
AT3G61680.2	protein_coding		PLIP1 encodes a plastid localized phospholipase A1 involved in seed oil biosynthesis.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G53180.5	protein_coding		Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	polypyrimidine tract-binding protein 2;(source:Araport11)
AT5G53180.4	protein_coding		Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	polypyrimidine tract-binding protein 2;(source:Araport11)
AT3G18990.2	protein_coding		Required for vernalization. Essential for the complete repression of FLC in vernalized plants. Required for the methylation of  histone H3	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT4G00200.2	protein_coding			AT hook motif DNA-binding family protein;(source:Araport11)
AT4G35590.2	protein_coding			RWP-RK domain-containing protein;(source:Araport11)
AT3G03660.4	protein_coding		Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.	WUSCHEL related homeobox 11;(source:Araport11)
AT3G03660.3	protein_coding		Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.	WUSCHEL related homeobox 11;(source:Araport11)
AT5G35960.2	protein_coding			Protein kinase family protein;(source:Araport11)
AT3G02055.1	long_noncoding_rna			None;(source:Araport11)
AT2G09175.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G40720;(source:Araport11)
AT5G06770.5	protein_coding		KHZ2  is a CCCH zinc-finger and KH domain protein belonging to the VII subfamily. It is expressed throughout the plant. Highly similar to KHZ1.Double mutants with khz1 are  late flowering. Overexpression leads to increased rates of leaf senescence.	KH domain-containing protein / zinc finger (CCCH type) family protein;(source:Araport11)
AT4G09225.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G35630;(source:Araport11)
AT5G07325.1	long_noncoding_rna			None;(source:Araport11)
AT5G06770.2	protein_coding		KHZ2  is a CCCH zinc-finger and KH domain protein belonging to the VII subfamily. It is expressed throughout the plant. Highly similar to KHZ1.Double mutants with khz1 are  late flowering. Overexpression leads to increased rates of leaf senescence.	KH domain-containing protein / zinc finger (CCCH type) family protein;(source:Araport11)
AT3G05775.1	protein_coding			lon protease-like protein;(source:Araport11)
AT2G32179.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G32180;(source:Araport11)
AT1G66760.4	protein_coding			MATE efflux family protein;(source:Araport11)
AT5G06710.3	protein_coding		Homeobox-leucine zipper protein.	homeobox leucine zipper protein;(source:Araport11)
AT3G02035.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G07690;(source:Araport11)
AT5G06710.4	protein_coding		Homeobox-leucine zipper protein.	homeobox leucine zipper protein;(source:Araport11)
AT1G22430.5	protein_coding			GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT1G22430.4	protein_coding			GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G07005.1	long_noncoding_rna			None;(source:Araport11)
AT1G22430.3	protein_coding			GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT1G57820.3	protein_coding		Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro.  The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.	Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT5G23480.6	protein_coding			SWIB/MDM2, Plus-3 and GYF domain-containing protein;(source:Araport11)
AT4G23240.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 16;(source:Araport11)
AT5G23480.4	protein_coding			SWIB/MDM2, Plus-3 and GYF domain-containing protein;(source:Araport11)
AT5G23480.3	protein_coding			SWIB/MDM2, Plus-3 and GYF domain-containing protein;(source:Araport11)
AT5G23480.2	protein_coding			SWIB/MDM2, Plus-3 and GYF domain-containing protein;(source:Araport11)
AT1G08667.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G64280;(source:Araport11)
AT3G03455.1	long_noncoding_rna			None;(source:Araport11)
AT5G27970.5	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT2G07632.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G15370.2	protein_coding		Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.	baruol synthase 1;(source:Araport11)
AT5G61560.3	protein_coding			U-box domain-containing protein kinase family protein;(source:Araport11)
AT3G43810.2	protein_coding		EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant.	calmodulin 7;(source:Araport11)
AT4G14740.4	protein_coding		FORKED-LIKE family member, part of Group 1 (FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT3G55100.2	protein_coding			ABC-2 type transporter family protein;(source:Araport11)
AT5G08035.1	long_noncoding_rna			None;(source:Araport11)
AT2G10625.1	protein_coding			Ulp1 protease family, carboxy-terminal catalytic domain protein;(source:Araport11)
AT5G23490.4	protein_coding			hypothetical protein;(source:Araport11)
AT4G06120.1	novel_transcribed_region			novel transcribed region; detected in receptacle, leaf, dark-grown seedling, light-grown seedling, aerial, shoot apical meristem;(source:Araport11)
AT4G23000.2	protein_coding			Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT5G23490.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G05415.1	miRNA_primary_transcript			microRNA ath-MIR5646 precursor;(source:Araport11)
AT1G61420.3	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT2G09905.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G47480;(source:Araport11)
AT5G46270.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G46270.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G51790.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G51790.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G55500.6	protein_coding			evolutionarily conserved C-terminal region 4;(source:Araport11)
AT1G55350.6	protein_coding		Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway. It localizes to membranes and undergoes intramolecular autolytic cleavage events that release the calpain domain into  the cytoplasm.	calpain-type cysteine protease family;(source:Araport11)
AT2G09020.1	long_noncoding_rna			None;(source:Araport11)
AT4G15233.7	protein_coding			ABC-2 and Plant PDR ABC-type transporter family protein;(source:Araport11)
AT4G15233.6	protein_coding			ABC-2 and Plant PDR ABC-type transporter family protein;(source:Araport11)
AT4G15233.5	protein_coding			ABC-2 and Plant PDR ABC-type transporter family protein;(source:Araport11)
AT1G55500.4	protein_coding			evolutionarily conserved C-terminal region 4;(source:Araport11)
AT4G15233.3	protein_coding			ABC-2 and Plant PDR ABC-type transporter family protein;(source:Araport11)
AT3G27473.4	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT3G14690.2	protein_coding		putative cytochrome P450The mRNA is cell-to-cell mobile.	cytochrome P450, family 72, subfamily A, polypeptide 15;(source:Araport11)
AT3G01770.2	protein_coding		Bromodomain protein that functions as a negative regulator of sugar and ABA signaling.	bromodomain and extraterminal domain protein 10;(source:Araport11)
AT2G05855.1	long_noncoding_rna			None;(source:Araport11)
AT4G15233.8	protein_coding			ABC-2 and Plant PDR ABC-type transporter family protein;(source:Araport11)
AT5G22450.3	protein_coding			spectrin beta chain, brain;(source:Araport11)
AT5G22450.2	protein_coding			spectrin beta chain, brain;(source:Araport11)
AT4G27970.2	protein_coding		Encodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane.	SLAC1 homologue 2;(source:Araport11)
AT3G25010.2	protein_coding			receptor like protein 41;(source:Araport11)
AT5G60920.2	protein_coding		Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis.  Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family;(source:Araport11)
AT2G04095.1	long_noncoding_rna			None;(source:Araport11)
AT3G00300.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G06457.1	small_nucleolar_rna			None;(source:Araport11)
AT1G13780.2	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G04750.4	protein_coding		Encodes vesicle-associated membrane protein 7B (VAMP7B, or VAMP721). Required for cell plate formation.VAMP721 interacts with KAT1 and KC1 K+ channels, affects channel gating and suppresses the K+ current within the physiological voltage range. Post-transcriptionally regulated by CRT1/2 under ER stress.	vesicle-associated membrane protein 721;(source:Araport11)
AT4G18490.7	protein_coding			hypothetical protein;(source:Araport11)
AT5G64520.7	protein_coding		Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.	homolog of X-ray repair cross complementing 2 (XRCC2);(source:Araport11)
AT5G06435.1	long_noncoding_rna			None;(source:Araport11)
AT3G00300.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G73150.2	protein_coding		Bromodomain and extra terminal domain family protein. Binds to acetyl-histone H3. Binding is reduced when GTE3 is SUMOylated by SIZ1.	global transcription factor group E3;(source:Araport11)
AT1G04750.3	protein_coding		Encodes vesicle-associated membrane protein 7B (VAMP7B, or VAMP721). Required for cell plate formation.VAMP721 interacts with KAT1 and KC1 K+ channels, affects channel gating and suppresses the K+ current within the physiological voltage range. Post-transcriptionally regulated by CRT1/2 under ER stress.	vesicle-associated membrane protein 721;(source:Araport11)
AT1G07175.2	protein_coding			alternative NAD(P)H dehydrogenase;(source:Araport11)
AT4G31408.2	other_rna			None;(source:Araport11)
AT5G64520.9	protein_coding		Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.	homolog of X-ray repair cross complementing 2 (XRCC2);(source:Araport11)
AT5G64520.8	protein_coding		Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.	homolog of X-ray repair cross complementing 2 (XRCC2);(source:Araport11)
AT5G39570.2	protein_coding		Protein of unknown function. Binds phosphatidic acid and acts downstream of PLDalpha.	transmembrane protein;(source:Araport11)
AT4G31480.6	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT1G24350.4	protein_coding			Acid phosphatase/vanadium-dependent haloperoxidase-related protein;(source:Araport11)
AT5G02835.1	long_noncoding_rna			None;(source:Araport11)
AT1G45207.3	protein_coding			Remorin family protein;(source:Araport11)
AT4G07995.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G50860.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G56510.4	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G60930.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G26140.2	protein_coding			Putative lysine decarboxylase family protein;(source:Araport11)
AT5G02775.1	long_noncoding_rna			None;(source:Araport11)
AT1G04363.1	long_noncoding_rna			None;(source:Araport11)
AT4G19380.2	protein_coding			Long-chain fatty alcohol dehydrogenase family protein;(source:Araport11)
AT5G15845.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G15850;(source:Araport11)
AT5G26160.3	protein_coding			light-independent protochlorophyllide reductase subunit;(source:Araport11)
AT1G19400.3	protein_coding		Tail-anchored (TA) OEP membrane protein which possesses a single C-terminal transmembrane domain targeting post-translationally to plastids.	Erythronate-4-phosphate dehydrogenase family protein;(source:Araport11)
AT1G71528.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G71530;(source:Araport11)
AT4G09815.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G39170;(source:Araport11)
AT1G19400.4	protein_coding		Tail-anchored (TA) OEP membrane protein which possesses a single C-terminal transmembrane domain targeting post-translationally to plastids.	Erythronate-4-phosphate dehydrogenase family protein;(source:Araport11)
AT2G17905.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT1G34355.2	protein_coding		Encodes PS1 (Parallel Spindle 1). Mutations in PS1 lead to diploid male spores, diploid pollen grains, and spontaneous triploid plants in the next generation. Female meiosis is not affected in the mutants.	forkhead-associated (FHA) domain-containing protein;(source:Araport11)
AT1G34355.3	protein_coding		Encodes PS1 (Parallel Spindle 1). Mutations in PS1 lead to diploid male spores, diploid pollen grains, and spontaneous triploid plants in the next generation. Female meiosis is not affected in the mutants.	forkhead-associated (FHA) domain-containing protein;(source:Araport11)
AT2G16365.6	protein_coding		PCH1 binds and stabilizes the active (Pfr) form of phytochrome B and is involved in the formation of photobodies in the nucleus. PCH1 is expressed in evenings and is associated to the evening complex through binding to phyB, and represses hypocotyl elongation and growth. Using mass spec, the existence of the At2g16365.2 isoform has been verified, however here is no evidence that any of the other three variants are present. Atg2G16365.2 will be assigned PCH1; exon 4 and 5 in the other variants are actually another gene of the F-box/DUF295 family with gene name FDA10.	F-box family protein;(source:Araport11)
AT2G30990.5	protein_coding			arginine N-methyltransferase, putative (DUF688);(source:Araport11)
AT4G25690.uORF1	uORF			Derives_from AT4G25690;(source:Araport11)
AT1G06873.1	small_nuclear_rna			U1;(source:Araport11)
AT2G44980.3	protein_coding			SNF2 domain-containing protein / helicase domain-containing protein;(source:Araport11)
AT4G13900.2	pseudogene			pseudogene of receptor like protein 47;(source:Araport11)
AT1G62515.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G31360.3	protein_coding		Encodes a (d)NTP-dependent 3 Prime->5 Prime DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.	RECQ helicase L2;(source:Araport11)
AT2G37150.9	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G37150.8	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G04085.1	long_noncoding_rna			None;(source:Araport11)
AT3G08190.1	long_noncoding_rna			None;(source:Araport11)
AT3G20270.6	protein_coding		Encodes one of the two LBP/BPI related proteins (AT1G04970/LBR-1, AT3G20270/LBR-2) that bind to LPS directly and regulate PR1 expression.	lipid-binding serum glycoprotein family protein;(source:Araport11)
AT1G64795.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G37150.7	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G20270.5	protein_coding		Encodes one of the two LBP/BPI related proteins (AT1G04970/LBR-1, AT3G20270/LBR-2) that bind to LPS directly and regulate PR1 expression.	lipid-binding serum glycoprotein family protein;(source:Araport11)
AT2G37150.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G02470.3	protein_coding		Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins that acts as  a novel upstream regulator of root hair formation during Pi starvation. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).	alfin-like 6;(source:Araport11)
AT4G34060.3	protein_coding		Encodes a protein with  5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.	demeter-like protein 3;(source:Araport11)
AT2G15560.2	protein_coding		Putative endonuclease	Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT4G08085.1	long_noncoding_rna			None;(source:Araport11)
AT2G01630.3	protein_coding			O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT3G13730.2	protein_coding		Encodes a cytochrome P-450 gene that is involved in brassinosteroid biosynthesis, most likely in the conversion step of teasterone (TE) to 3-dehydroteasterone (3DT), and/or 6-deoxoteasterone (6-deoxoTE) to 6-deoxo-3-dehydroteasterone (6-deoxo3DT); or the conversion of cathasterone (CT) to TE, and/or 6-deoxocathasterone (6-deoxoCT) to 6-deoxoTE. Recently, CYP90D1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). Member of the CYP90C CYP450 family. Similar to Cytochrome P450 90C1 (ROT3).	cytochrome P450, family 90, subfamily D, polypeptide 1;(source:Araport11)
AT5G08990.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G61210;(source:Araport11)
AT4G17380.2	protein_coding		Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination.	MUTS-like protein 4;(source:Araport11)
AT5G02315.1	small_nucleolar_rna			None;(source:Araport11)
AT5G07815.1	long_noncoding_rna			None;(source:Araport11)
AT4G34060.5	protein_coding		Encodes a protein with  5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.	demeter-like protein 3;(source:Araport11)
AT4G39270.7	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G02930.3	protein_coding		Encodes a microtubule-associated protein.	weak chloroplast movement under blue light protein (DUF827);(source:Araport11)
AT1G09005.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G49390.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G09005.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G66654.5	protein_coding			Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G66654.4	protein_coding			Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT1G13620.2	protein_coding		Encodes a root meristem growth factor (RGF).  Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation.  Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).	root meristem growth factor-like protein;(source:Araport11)
AT2G45920.2	protein_coding			U-box domain-containing protein;(source:Araport11)
AT1G10320.2	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT4G08991.3	pseudogene			pseudogene of cytochrome C oxidase assembly protein;(source:Araport11)
AT5G02325.1	small_nucleolar_rna			None;(source:Araport11)
AT4G12910.2	protein_coding			serine carboxypeptidase-like 20;(source:Araport11)
AT4G32810.2	protein_coding		Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip.  Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching.	carotenoid cleavage dioxygenase 8;(source:Araport11)
AT2G06385.1	long_noncoding_rna			None;(source:Araport11)
AT2G43690.3	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT1G08677.1	long_noncoding_rna			None;(source:Araport11)
AT1G33470.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G05930.6	protein_coding			guanylyl cyclase 1;(source:Araport11)
AT4G07065.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G22280;(source:Araport11)
AT2G42465.1	protein_coding			MATH domain/coiled-coil protein;(source:Araport11)
AT3G57410.3	protein_coding		Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.	villin 3;(source:Araport11)
AT3G05025.1	long_noncoding_rna			None;(source:Araport11)
AT2G16640.2	protein_coding			multimeric translocon complex in the outer envelope membrane 132;(source:Araport11)
AT1G04887.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G11770;(source:Araport11)
AT3G50370.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G28160.2	protein_coding		Encodes a putative transcription factor that regulates iron uptake responses.  mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency.  The expression of many iron-regulated genes is dependent on FIT1.  It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake.  It is post-transcriptionally controlled.	FER-like regulator of iron uptake;(source:Araport11)
AT3G59410.5	protein_coding		Encodes an eIF2alpha kinase that can bind uncharged tRNA via its C-terminus and can phosphorylate both eIF2alpha homologues in Arabidopsis.	protein kinase family protein;(source:Araport11)
AT1G15215.4	protein_coding		Encodes SHH1, a homeodomain protein required for DNA methylation. It is an atypical RNA-directed DNA methylation component, and functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways.	SAWADEE HOMEODOMAIN protein;(source:Araport11)
AT4G33920.3	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT2G40540.5	protein_coding		putative potassium transporter AtKT2p (AtKT2) mRNA,	potassium transporter 2;(source:Araport11)
AT2G08255.1	long_noncoding_rna			None;(source:Araport11)
AT2G03150.2	protein_coding		Encodes a nuclear-localized calcium-binding protein RSA1 (SHORT ROOT IN SALT MEDIUM 1), which is required for salt tolerance.	ATP/GTP-binding protein family;(source:Araport11)
AT5G28520.2	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G03965.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G20230;(source:Araport11)
AT1G33490.3	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT1G33490.2	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT3G12820.2	protein_coding		Member of the R2R3 factor gene family.	myb domain protein 10;(source:Araport11)
AT1G80380.8	protein_coding		encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G33880.2	protein_coding		Encodes a protein with similarity to WUS type homeodomain protein. Required for meristem growth and development and acts through positive regulation of WUS. Loss of function phenotypes include embryo lethality, hyponastic cotyledons, reduced root development and smaller meristems. Phenotypes can be rescued by addition of sucrose in the growth media. Appears to be regulated by cytokinin and acts downstream of cytokinin receptors.	homeobox-3;(source:Araport11)
AT3G13900.3	protein_coding		Encodes a member of the P4 subfamily of P-type ATPases expressed in the pollen plasma membrane.  Double mutants with ALA6 display pollen and pollen tube defects.	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT5G20220.3	protein_coding			zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT1G06453.1	small_nucleolar_rna			None;(source:Araport11)
AT5G02995.1	protein_coding			galactose oxidase/kelch repeat protein;(source:Araport11)
AT2G04325.1	long_noncoding_rna			None;(source:Araport11)
AT2G47060.6	protein_coding		Encodes Pto-interacting 1-4 (PTI1-4), a member of the PTI1-like serine/threonine protein kinases that share strong sequence identity to the tomato PTI1 kinase.	Protein kinase superfamily protein;(source:Araport11)
AT1G72500.2	protein_coding			inter alpha-trypsin inhibitor, heavy chain-like protein;(source:Araport11)
AT4G18460.2	protein_coding			D-Tyr-tRNA(Tyr) deacylase family protein;(source:Araport11)
AT1G54920.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G67440.2	protein_coding		Homolog of bacterial rsgA, functions in chloroplast ribosome biogenesis.	Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT5G49060.2	protein_coding			DnaJ heat shock amino-terminal domain protein (DUF1977);(source:Araport11)
AT2G35950.2	protein_coding			embryo sac development arrest 12;(source:Araport11)
AT5G24210.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G34490.2	protein_coding		CYCLASE ASSOCIATED PROTEIN	cyclase associated protein 1;(source:Araport11)
AT5G41612.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G41610;(source:Araport11)
AT5G05645.1	long_noncoding_rna			None;(source:Araport11)
AT4G27970.5	protein_coding		Encodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane.	SLAC1 homologue 2;(source:Araport11)
AT1G72500.3	protein_coding			inter alpha-trypsin inhibitor, heavy chain-like protein;(source:Araport11)
AT5G17167.1	protein_coding			nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT5G06765.1	long_noncoding_rna			None;(source:Araport11)
AT1G18335.2	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G18335.3	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G32880.2	protein_coding			TRAF-like family protein;(source:Araport11)
AT4G03805.1	long_noncoding_rna			None;(source:Araport11)
AT3G62310.3	protein_coding			RNA helicase family protein;(source:Araport11)
AT1G56220.5	protein_coding			Dormancy/auxin associated family protein;(source:Araport11)
AT2G17420.2	protein_coding		NADPH-dependent thioredoxin reductase, major cytosolic isoformThe mRNA is cell-to-cell mobile.	NADPH-dependent thioredoxin reductase A;(source:Araport11)
AT3G03775.1	long_noncoding_rna			None;(source:Araport11)
AT4G27780.2	protein_coding		Encodes acyl-CoA-binding protein with ankyrin repeatsThe mRNA is cell-to-cell mobile.	acyl-CoA binding protein 2;(source:Araport11)
AT5G07165.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G08970.1	long_noncoding_rna			None;(source:Araport11)
AT1G52380.4	protein_coding			NUP50 (Nucleoporin 50 kDa) protein;(source:Araport11)
AT5G02335.1	long_noncoding_rna			None;(source:Araport11)
AT2G04700.3	protein_coding		Encodes catalytic subunit of ferredoxin/thioredoxin reductase.	ferredoxin thioredoxin reductase catalytic beta chain family protein;(source:Araport11)
AT1G75210.3	protein_coding			HAD-superfamily hydrolase, subfamily IG, 5-nucleotidase;(source:Araport11)
AT1G75210.2	protein_coding			HAD-superfamily hydrolase, subfamily IG, 5-nucleotidase;(source:Araport11)
AT2G34040.3	protein_coding			Apoptosis inhibitory protein 5 (API5);(source:Araport11)
AT1G07983.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G54690;(source:Araport11)
AT3G03195.1	long_noncoding_rna			None;(source:Araport11)
AT3G10572.3	protein_coding		APEM9 is required for both PTS1- and PTS2-dependent protein transport. APEM9 interacts with PEX6 in BiFC assay and mating-based Split ubiquitin system. BiFC data shows that APEM9 is required for peroxisomal localization of PEX1-PEX6 complex. These results indicate that APEM9 functions like mammalian PEX26 and yeast PEX15.	3-phosphoinositide-dependent protein kinase-1;(source:Araport11)
AT3G10572.2	protein_coding		APEM9 is required for both PTS1- and PTS2-dependent protein transport. APEM9 interacts with PEX6 in BiFC assay and mating-based Split ubiquitin system. BiFC data shows that APEM9 is required for peroxisomal localization of PEX1-PEX6 complex. These results indicate that APEM9 functions like mammalian PEX26 and yeast PEX15.	3-phosphoinositide-dependent protein kinase-1;(source:Araport11)
AT2G04775.1	long_noncoding_rna			None;(source:Araport11)
AT3G05030.4	protein_coding		Encodes a vacuolar K+/H+ exchanger essential for active K+ uptake at the tonoplast and involved in regulating stomatal closure.	sodium hydrogen exchanger 2;(source:Araport11)
AT1G08885.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G17655.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G01005.1	antisense_rna			Natural antisense transcript overlaps with AT3G01360;(source:Araport11)
AT3G50230.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G05030.3	protein_coding		Encodes a vacuolar K+/H+ exchanger essential for active K+ uptake at the tonoplast and involved in regulating stomatal closure.	sodium hydrogen exchanger 2;(source:Araport11)
AT1G01650.3	protein_coding			SIGNAL PEPTIDE PEPTIDASE-LIKE 4;(source:Araport11)
AT5G19480.4	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT4G23210.4	protein_coding		Encodes a Cysteine-rich receptor-like kinase (CRK13).  Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.	cysteine-rich RLK (RECEPTOR-like protein kinase) 13;(source:Araport11)
AT5G19480.3	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT1G01650.4	protein_coding			SIGNAL PEPTIDE PEPTIDASE-LIKE 4;(source:Araport11)
AT1G35215.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G05050.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G05050.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G40530.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G06810.1	long_noncoding_rna			None;(source:Araport11)
AT3G04875.1	long_noncoding_rna			None;(source:Araport11)
AT1G72050.3	protein_coding		Encodes a transcriptional factor TFIIIA required for transcription of 5S rRNA gene.  5S rRNA is the smallest constituent of the ribosome.  Work on one of the gene models AT1G72050.2 showed that it encodes a protein with nine Cys(2)-His(2)-type zinc fingers, a characteristic feature of TFIIIA proteins. AT1G72050.2 also contains a 23 amino acid spacer between fingers 1 and 2, a 66 amino acid spacer between fingers 4 and 5, and a 50 amino acid non-finger C-terminal tail.  in vitro assay demonstrated that AT1g72050.2 binds to 5S rDNA  and efficiently stimulates the transcription of 5S rRNA. AT1g72050.2 also binds to 5S rRNA in vitro. AT1g72050.2 is located at several nuclear foci including the nucleolus and is absent from the cytoplasm.	transcription factor IIIA;(source:Araport11)
AT1G09655.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G27040.5	protein_coding			EAP30/Vps36 family protein;(source:Araport11)
AT3G46490.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G72050.4	protein_coding		Encodes a transcriptional factor TFIIIA required for transcription of 5S rRNA gene.  5S rRNA is the smallest constituent of the ribosome.  Work on one of the gene models AT1G72050.2 showed that it encodes a protein with nine Cys(2)-His(2)-type zinc fingers, a characteristic feature of TFIIIA proteins. AT1G72050.2 also contains a 23 amino acid spacer between fingers 1 and 2, a 66 amino acid spacer between fingers 4 and 5, and a 50 amino acid non-finger C-terminal tail.  in vitro assay demonstrated that AT1g72050.2 binds to 5S rDNA  and efficiently stimulates the transcription of 5S rRNA. AT1g72050.2 also binds to 5S rRNA in vitro. AT1g72050.2 is located at several nuclear foci including the nucleolus and is absent from the cytoplasm.	transcription factor IIIA;(source:Araport11)
AT1G64480.2	protein_coding		calcineurin B-like protein 8, member of plant-specific family of calcium sensor proteins containing 3 EF-hand motifs	calcineurin B-like protein 8;(source:Araport11)
AT1G64480.3	protein_coding		calcineurin B-like protein 8, member of plant-specific family of calcium sensor proteins containing 3 EF-hand motifs	calcineurin B-like protein 8;(source:Araport11)
AT2G33260.2	protein_coding			Tryptophan/tyrosine permease;(source:Araport11)
AT1G64583.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G64480.4	protein_coding		calcineurin B-like protein 8, member of plant-specific family of calcium sensor proteins containing 3 EF-hand motifs	calcineurin B-like protein 8;(source:Araport11)
AT5G09315.1	protein_coding			vacuolar sorting protein 9 domain protein;(source:Araport11)
AT1G26208.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G26210;(source:Araport11)
AT1G10417.3	protein_coding		Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.	RUN/FYVE domain protein;(source:Araport11)
AT1G10417.2	protein_coding		Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.	RUN/FYVE domain protein;(source:Araport11)
AT1G26208.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G26210;(source:Araport11)
AT1G10417.4	protein_coding		Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.	RUN/FYVE domain protein;(source:Araport11)
AT1G26208.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G26210;(source:Araport11)
AT1G26208.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G26210;(source:Araport11)
AT5G03770.3	protein_coding		Encodes a putative KDO (3-deoxy-D-manno-octulosonate) transferase	KDO transferase A;(source:Araport11)
AT1G36005.1	protein_coding			receptor-like kinase;(source:Araport11)
AT1G49832.2	other_rna			None;(source:Araport11)
AT1G62915.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G09920.4	protein_coding			phosphatidyl inositol monophosphate 5 kinase;(source:Araport11)
AT5G41110.3	protein_coding			meiosis chromosome segregation family protein;(source:Araport11)
AT5G41110.2	protein_coding			meiosis chromosome segregation family protein;(source:Araport11)
AT4G14520.4	protein_coding			DNA-directed RNA polymerase II-like protein;(source:Araport11)
AT2G07648.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G04810.3	protein_coding		Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 2;(source:Araport11)
AT3G47340.4	protein_coding		encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene Primes expression pattern is responding to the level of sugar in the cell.	glutamine-dependent asparagine synthase 1;(source:Araport11)
AT2G26590.4	protein_coding			regulatory particle non-ATPase 13;(source:Araport11)
AT3G49010.6	protein_coding		Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).	breast basic conserved 1;(source:Araport11)
AT3G49010.7	protein_coding		Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).	breast basic conserved 1;(source:Araport11)
AT4G09695.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G38250;(source:Araport11)
AT5G01920.2	protein_coding		Chloroplast thylakoid protein kinase STN8 is specific in phosphorylation of N-terminal threonine residues in D1, D2  and CP43 proteins, and Thr-4 in PsbH  protein of photosystem II. Phosphorylation of Thr-4 in  the wild type required both light and prior  phosphorylation at Thr-2.	Protein kinase superfamily protein;(source:Araport11)
AT1G12290.4	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G64340.2	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT1G23040.3	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G23040.2	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G35738.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G35740;(source:Araport11)
AT3G61560.3	protein_coding			Reticulon family protein;(source:Araport11)
AT1G34770.3	protein_coding		Encodes a nuclear localized,  structural subunit of the SMC 5/6 complex and a non- SMC element. Loss of function results in abnormal cell division and embryo lethality. Analysis of partially rescued lines indicates a role in double strand break DNA repair. Similar phenotype to NSE1 which it also interacts with.Maintains cell viability together with NSE1 during early embryogenesis.	melanoma-associated antigen G1-like protein;(source:Araport11)
AT3G62420.uORF1	uORF			Derives_from AT3G62420;(source:Araport11)
AT3G09010.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G06685.1	long_noncoding_rna			None;(source:Araport11)
AT4G03500.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT4G10360.3	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT5G02185.1	long_noncoding_rna			None;(source:Araport11)
AT1G04957.1	long_noncoding_rna			None;(source:Araport11)
AT3G46210.7	protein_coding			Ribosomal protein S5 domain 2-like superfamily protein;(source:Araport11)
AT3G06395.1	long_noncoding_rna			None;(source:Araport11)
AT3G00430.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G05107.1	long_noncoding_rna			None;(source:Araport11)
AT1G09317.1	long_noncoding_rna			None;(source:Araport11)
AT1G04797.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G10522;(source:Araport11)
AT3G08470.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G55310;(source:Araport11)
AT4G09325.1	long_noncoding_rna			None;(source:Araport11)
AT5G05835.1	long_noncoding_rna			None;(source:Araport11)
AT5G00360.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G02045.1	long_noncoding_rna			None;(source:Araport11)
AT4G09095.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, flower, pollen;(source:Araport11)
AT4G29950.3	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT5G58610.8	protein_coding			PHD finger transcription factor;(source:Araport11)
AT5G58610.9	protein_coding			PHD finger transcription factor;(source:Araport11)
AT3G24440.2	protein_coding		Encodes Vernalization Insensitive 3-like 1 (VIL1).  VIL1 is involved in the photoperiod and vernalization of Arabidopsis by regulating expression of the related floral repressors Flowering Locus C (FLC) and Flowering Locus M (FLM).  VIL1, along with VIN3 (Vernalization Insensitive 3) is necessary for the chromatin modification to FLC and FLM.	Fibronectin type III domain-containing protein;(source:Araport11)
AT5G10330.4	protein_coding		Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.	histidinol phosphate aminotransferase 1;(source:Araport11)
AT2G09405.1	long_noncoding_rna			None;(source:Araport11)
AT1G18193.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G58610.6	protein_coding			PHD finger transcription factor;(source:Araport11)
AT5G58610.7	protein_coding			PHD finger transcription factor;(source:Araport11)
AT3G59770.4	protein_coding		Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.	sacI homology domain-containing protein / WW domain-containing protein;(source:Araport11)
AT3G02155.1	long_noncoding_rna			None;(source:Araport11)
AT5G58610.3	protein_coding			PHD finger transcription factor;(source:Araport11)
AT1G32230.6	protein_coding		Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family.  Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants.  Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.The mRNA is cell-to-cell mobile.	WWE protein-protein interaction domain protein family;(source:Araport11)
AT1G32230.4	protein_coding		Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family.  Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants.  Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.The mRNA is cell-to-cell mobile.	WWE protein-protein interaction domain protein family;(source:Araport11)
AT1G10750.2	protein_coding			carboxyl-terminal peptidase, putative (DUF239);(source:Araport11)
AT3G04440.2	protein_coding			Plasma-membrane choline transporter family protein;(source:Araport11)
AT1G17310.2	protein_coding			MADS-box transcription factor family protein;(source:Araport11)
AT4G22540.5	protein_coding			OSBP(oxysterol binding protein)-related protein 2A;(source:Araport11)
AT1G13320.4	protein_coding		one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)	protein phosphatase 2A subunit A3;(source:Araport11)
AT4G05845.1	long_noncoding_rna			None;(source:Araport11)
AT5G15730.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G08060.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G24820;(source:Araport11)
AT4G32380.2	protein_coding			pectin lyase superfamily protein;(source:Araport11)
AT5G00930.1	long_noncoding_rna			None;(source:Araport11)
AT2G06455.1	small_nuclear_rna			U6;(source:Araport11)
AT1G07203.3	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial;(source:Araport11)
AT2G35738.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G35740;(source:Araport11)
AT4G23200.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 12;(source:Araport11)
AT1G07903.1	small_nucleolar_rna			None;(source:Araport11)
AT5G24620.3	protein_coding			Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT2G27240.2	protein_coding			aluminum activated malate transporter family protein;(source:Araport11)
AT2G08040.1	long_noncoding_rna			None;(source:Araport11)
AT2G09915.1	long_noncoding_rna			None;(source:Araport11)
AT2G28620.3	protein_coding		Mutants have radially swollen roots but do not exhibit defects in abundance or orientation of cortical microtubules, nor are microfibrils reduced.  Cellulose synthesis is also unchanged with respect to wild type.  There is a disruption in the normal pattern of cell wall placement.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G28620.2	protein_coding		Mutants have radially swollen roots but do not exhibit defects in abundance or orientation of cortical microtubules, nor are microfibrils reduced.  Cellulose synthesis is also unchanged with respect to wild type.  There is a disruption in the normal pattern of cell wall placement.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G37240.4	protein_coding			hypothetical protein;(source:Araport11)
AT4G13345.3	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT5G64000.2	protein_coding		3 Prime(2 Prime),5 Prime-bisphosphate nucleotidase	Inositol monophosphatase family protein;(source:Araport11)
AT3G21660.2	protein_coding			UBX domain-containing protein;(source:Araport11)
AT3G17070.2	protein_coding			Peroxidase family protein;(source:Araport11)
AT1G54280.3	protein_coding		Encodes a member of the P4 subfamily of P-type ATPases expressed in the pollen plasma membrane.  Double mutants with ALA7 display pollen and pollen tube defects.	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT1G54280.2	protein_coding		Encodes a member of the P4 subfamily of P-type ATPases expressed in the pollen plasma membrane.  Double mutants with ALA7 display pollen and pollen tube defects.	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT5G01945.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G12390;(source:Araport11)
AT4G03895.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G01575;(source:Araport11)
AT4G35840.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G07545.1	long_noncoding_rna			None;(source:Araport11)
AT3G60620.2	protein_coding			cytidinediphosphate diacylglycerol synthase 5;(source:Araport11)
AT3G48300.2	protein_coding		putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 23;(source:Araport11)
AT3G56820.3	protein_coding			RmlC-type cupin;(source:Araport11)
AT5G42320.2	protein_coding			Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT1G09493.1	long_noncoding_rna			None;(source:Araport11)
AT4G26700.6	protein_coding		Encodes a member of the fimbrin family. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	fimbrin 1;(source:Araport11)
AT4G26700.7	protein_coding		Encodes a member of the fimbrin family. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	fimbrin 1;(source:Araport11)
AT4G04500.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 37;(source:Araport11)
AT4G04500.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 37;(source:Araport11)
AT5G38240.2	protein_coding			Protein kinase family protein;(source:Araport11)
AT3G10270.2	protein_coding		Protein targeting to mitochondria is influenced by UTR sequences.	DNA gyrase subunit B;(source:Araport11)
AT1G70060.2	protein_coding		Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).The mRNA is cell-to-cell mobile.	SIN3-like 4;(source:Araport11)
AT5G01965.1	long_noncoding_rna			None;(source:Araport11)
AT1G72490.3	protein_coding		DRO1 is a member of the IGT gene family and has a unknown function . It is expressed in roots and involved in leaf root architecture, specifically the orientation of lateral root angles. Involved in determining lateral root branch angle.	hypothetical protein;(source:Araport11)
AT1G51340.3	protein_coding		Encodes a root citrate transporter which together with the root malate transporter ALMT1 are the primary mechanism of aluminum tolerance.	MATE efflux family protein;(source:Araport11)
AT1G77131.3	pseudogene		Annotated as pseudogene of PGSIP, glycogenin glucosyltransferase.Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of plant glycogenin-like starch initiation protein 2;(source:Araport11)
AT1G51340.5	protein_coding		Encodes a root citrate transporter which together with the root malate transporter ALMT1 are the primary mechanism of aluminum tolerance.	MATE efflux family protein;(source:Araport11)
AT3G02215.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G09690;(source:Araport11)
AT3G55640.3	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G59710.2	protein_coding		Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator.The mRNA is cell-to-cell mobile.	VIRE2 interacting protein 2;(source:Araport11)
AT5G15900.2	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 19;(source:Araport11)
AT4G04740.6	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 23;(source:Araport11)
AT4G04740.7	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 23;(source:Araport11)
AT4G04740.4	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 23;(source:Araport11)
AT4G04740.5	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 23;(source:Araport11)
AT4G04740.3	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 23;(source:Araport11)
AT3G59810.3	protein_coding			Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT3G59810.2	protein_coding			Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT3G46880.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G16765.5	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G18245.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G18240;(source:Araport11)
AT4G16765.3	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G14395.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G18245.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G18240;(source:Araport11)
AT3G55510.2	protein_coding		Encodes a regulator of floral determinacy in that interacts with both nucleolar and nucleoplasmic proteins.	Noc2p family;(source:Araport11)
AT4G05355.1	long_noncoding_rna			None;(source:Araport11)
AT4G33580.3	protein_coding			beta carbonic anhydrase 5;(source:Araport11)
AT1G06467.1	small_nucleolar_rna			None;(source:Araport11)
AT5G24230.2	protein_coding			Lipase class 3-related protein;(source:Araport11)
AT2G09710.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G46225;(source:Araport11)
AT1G28410.2	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT2G28040.2	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G55720.2	protein_coding		member of Low affinity calcium antiporter CAX2 family	vacuolar cation/proton exchanger;(source:Araport11)
AT2G44460.2	protein_coding			beta glucosidase 28;(source:Araport11)
AT1G05940.4	protein_coding		Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.	cationic amino acid transporter 9;(source:Araport11)
AT5G53637.1	protein_coding			LOW protein: F-box/FBD/LRR-like protein;(source:Araport11)
AT1G06483.1	long_noncoding_rna			None;(source:Araport11)
AT5G01775.1	long_noncoding_rna			None;(source:Araport11)
AT2G05655.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05655.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G12495.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G42670.4	protein_coding		Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced. Locus-specific regulator of 24nt-siRNA expression, works together with CLSY2-4 as the master regulators of essentially all Pol-IV-dependent 24nt-siRNAs.	chromatin remodeling 38;(source:Araport11)
AT5G63130.2	protein_coding			Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT1G28960.6	protein_coding		Encodes a ppGpp pyrophosphohydrolase.	nudix hydrolase homolog 15;(source:Araport11)
AT5G53450.3	protein_coding			OBP3-responsive protein 1;(source:Araport11)
AT3G61350.2	protein_coding		Encodes an SKP1 interacting partner (SKIP4).	SKP1 interacting partner 4;(source:Araport11)
AT1G68480.3	protein_coding		Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue.  Together with NUB, it is involved in stamen and carpel development.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT1G02980.2	protein_coding		encodes an Arabidopsis cullin	cullin 2;(source:Araport11)
AT3G60040.3	protein_coding			F-box family protein;(source:Araport11)
AT2G25530.2	protein_coding			AFG1-like ATPase family protein;(source:Araport11)
AT1G08863.1	long_noncoding_rna			None;(source:Araport11)
AT4G08785.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G33300;(source:Araport11)
AT4G08785.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G33300;(source:Araport11)
AT5G08950.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G60050;(source:Araport11)
AT1G07277.1	long_noncoding_rna			None;(source:Araport11)
AT3G49640.5	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT4G34139.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G18820.3	protein_coding		Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins.  Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).	TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT5G18820.2	protein_coding		Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins.  Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).	TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT5G62170.2	protein_coding			LOW protein: M-phase inducer phosphatase-like protein;(source:Araport11)
AT5G62170.3	protein_coding			LOW protein: M-phase inducer phosphatase-like protein;(source:Araport11)
AT5G62170.4	protein_coding			LOW protein: M-phase inducer phosphatase-like protein;(source:Araport11)
AT3G44400.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G47090.4	protein_coding			zinc ion binding/nucleic acid binding protein;(source:Araport11)
AT5G17060.2	protein_coding		A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster), other ARFs and ARF-like proteins.	ADP-ribosylation factor B1B;(source:Araport11)
AT1G27080.2	protein_coding		Encodes a protein with low-affinity nitrate transporter activity that is expressed in the vascular tissue of the funiculus and the silique. This plasma membrane-localized enzyme is predicted to have 12 transmembrane domains. Plants lacking NRT1.6 have reduced levels of nitrate in their seeds and have increased levels of early embryonic developmental defects and seed abortion.	nitrate transporter 1.6;(source:Araport11)
AT4G38005.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G02780.3	protein_coding		Encodes a member of the lambda family of glutathione transferases. It has thiol transferase activity and self S-glutathionylation activity in vitro.	glutathione transferase lambda 1;(source:Araport11)
AT4G03157.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G44490.2	protein_coding			FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT3G04870.3	protein_coding		Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.	zeta-carotene desaturase;(source:Araport11)
AT4G08585.1	long_noncoding_rna			None;(source:Araport11)
AT1G54510.4	protein_coding		Encodes AtNEK1, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related serine/threonine kinase 1;(source:Araport11)
AT1G07993.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G54780;(source:Araport11)
AT3G54750.5	protein_coding			downstream neighbor of Son;(source:Araport11)
AT3G04870.4	protein_coding		Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.	zeta-carotene desaturase;(source:Araport11)
AT4G07960.2	protein_coding		encodes a gene similar to cellulose synthase	Cellulose-synthase-like C12;(source:Araport11)
AT5G56810.2	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G24570.2	protein_coding			transmembrane protein, putative (DUF707);(source:Araport11)
AT5G44480.4	protein_coding		mutant has Altered lateral root; UDP Glucose EpimeraseThe mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G67480.uORF1-2	uORF			Derives_from AT1G67480;(source:Araport11)
AT3G58930.5	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT2G34210.2	protein_coding			Transcription elongation factor Spt5;(source:Araport11)
AT3G58930.3	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G64253.1	protein_coding			DEK carboxy-terminal domain protein;(source:Araport11)
AT1G64253.2	protein_coding			DEK carboxy-terminal domain protein;(source:Araport11)
AT1G64253.3	protein_coding			DEK carboxy-terminal domain protein;(source:Araport11)
AT1G78200.5	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G78200.4	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT5G65080.3	protein_coding		Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported.	K-box region/MADS-box transcription factor family protein;(source:Araport11)
AT1G78200.3	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT2G07646.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G05223.1	long_noncoding_rna			None;(source:Araport11)
AT2G05945.1	long_noncoding_rna			None;(source:Araport11)
AT5G49780.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G04605.1	long_noncoding_rna			None;(source:Araport11)
AT4G16990.8	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT5G03570.4	protein_coding		Encodes FPN2, a tonoplast localized nickel transport protein. FPN2 is one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.	iron regulated 2;(source:Araport11)
AT4G06748.2	pseudogene			pseudogene of TSK-associating protein 1;(source:Araport11)
AT3G04310.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G03570.3	protein_coding		Encodes FPN2, a tonoplast localized nickel transport protein. FPN2 is one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.	iron regulated 2;(source:Araport11)
AT2G03640.5	protein_coding			Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein;(source:Araport11)
AT1G06317.1	long_noncoding_rna			None;(source:Araport11)
AT3G07960.2	protein_coding		Encodes phosphatidylinositol-4-phosphate 5-kinase 6 (PIP5K6).  Regulates clathrin-dependent endocytosis in pollen tubes.	Phosphatidylinositol-4-phosphate 5-kinase family protein;(source:Araport11)
AT3G28785.1	protein_coding			mutator-like transposase;(source:Araport11)
AT2G08990.1	long_noncoding_rna			None;(source:Araport11)
AT4G16957.1	protein_coding			SUPPRESSOR OF, CONSTITUTIVE protein;(source:Araport11)
AT3G24320.2	protein_coding		Encodes a DNA binding protein that promotes re-arrangements of mitochondrial genome. Mutations affects mitochondrial gene expression, and impairs mitochondrial function. Dual targeting of the protein to mitochondria and chloroplasts caused by alternative translation initiation. Plastid MSH1 depletion results in variegation, abiotic stress tolerance, variable growth rate, and delayed maturity.	MUTL protein homolog 1;(source:Araport11)
AT5G57785.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G04685.1	long_noncoding_rna			None;(source:Araport11)
AT4G21105.3	protein_coding			cytochrome-c oxidase/ electron carrier;(source:Araport11)
AT5G57050.3	protein_coding		Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo.	Protein phosphatase 2C family protein;(source:Araport11)
AT3G05795.1	long_noncoding_rna			None;(source:Araport11)
AT1G53090.3	protein_coding		Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain.  SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	SPA1-related 4;(source:Araport11)
AT3G02500.3	protein_coding			mental retardation GTPase activating protein;(source:Araport11)
AT3G02500.2	protein_coding			mental retardation GTPase activating protein;(source:Araport11)
AT4G08885.1	long_noncoding_rna			None;(source:Araport11)
AT1G53090.5	protein_coding		Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain.  SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	SPA1-related 4;(source:Araport11)
AT1G07267.1	long_noncoding_rna			None;(source:Araport11)
AT4G24170.2	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT3G07960.3	protein_coding		Encodes phosphatidylinositol-4-phosphate 5-kinase 6 (PIP5K6).  Regulates clathrin-dependent endocytosis in pollen tubes.	Phosphatidylinositol-4-phosphate 5-kinase family protein;(source:Araport11)
AT4G07835.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G00800.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G29740.2	protein_coding			Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G04093.1	long_noncoding_rna			None;(source:Araport11)
AT3G03985.1	long_noncoding_rna			None;(source:Araport11)
AT3G29010.2	protein_coding			Biotin/lipoate A/B protein ligase family;(source:Araport11)
AT3G29010.3	protein_coding			Biotin/lipoate A/B protein ligase family;(source:Araport11)
AT4G39960.2	protein_coding			Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT3G29010.5	protein_coding			Biotin/lipoate A/B protein ligase family;(source:Araport11)
AT3G29010.6	protein_coding			Biotin/lipoate A/B protein ligase family;(source:Araport11)
AT5G19633.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G15090.4	protein_coding		Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3.	FRS (FAR1 Related Sequences) transcription factor family;(source:Araport11)
AT4G15090.5	protein_coding		Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3.	FRS (FAR1 Related Sequences) transcription factor family;(source:Araport11)
AT1G79740.4	protein_coding			hAT transposon superfamily;(source:Araport11)
AT5G63640.uORF1	uORF			Derives_from AT5G63640;(source:Araport11)
AT2G08115.1	long_noncoding_rna			None;(source:Araport11)
AT4G15090.2	protein_coding		Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3.	FRS (FAR1 Related Sequences) transcription factor family;(source:Araport11)
AT5G58300.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G00400.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G40350.2	protein_coding		encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G00400.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G66005.5	protein_coding			Expressed protein;(source:Araport11)
AT5G66005.4	protein_coding			Expressed protein;(source:Araport11)
AT5G66005.7	protein_coding			Expressed protein;(source:Araport11)
AT5G66005.6	protein_coding			Expressed protein;(source:Araport11)
AT5G15510.4	protein_coding			TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT5G66005.8	protein_coding			Expressed protein;(source:Araport11)
AT1G08727.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G64740;(source:Araport11)
AT1G05903.1	long_noncoding_rna			None;(source:Araport11)
AT5G15510.3	protein_coding			TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT5G06440.6	protein_coding			polyketide cyclase/dehydrase/lipid transport superfamily protein;(source:Araport11)
AT2G25420.2	protein_coding			transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G55550.7	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G11910.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G55410.2	protein_coding			2-oxoglutarate dehydrogenase, E1 component;(source:Araport11)
AT4G20920.2	protein_coding			double-stranded RNA-binding domain (DsRBD)-containing protein;(source:Araport11)
AT4G20920.3	protein_coding			double-stranded RNA-binding domain (DsRBD)-containing protein;(source:Araport11)
AT4G20920.4	protein_coding			double-stranded RNA-binding domain (DsRBD)-containing protein;(source:Araport11)
AT4G20920.5	protein_coding			double-stranded RNA-binding domain (DsRBD)-containing protein;(source:Araport11)
AT5G11910.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G63530.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G09630.2	protein_coding			transmembrane protein (DUF616);(source:Araport11)
AT2G07545.1	long_noncoding_rna			None;(source:Araport11)
AT3G05655.1	long_noncoding_rna			None;(source:Araport11)
AT5G64460.9	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT2G02960.6	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G76710.3	protein_coding			SET domain group 26;(source:Araport11)
AT3G15140.2	protein_coding		ERI (At3g15140) encodes a protein of 337 amino acids of the ribonuclease H-like superfamily.  The protein contains both DEDDh and  SAP domains.The first exon contains a TCT-microsatellite structure (starting 226 bp after ATG) that, based on sequence complementarity, is a miR5021-cleavage target site. ERI is predicted to function as an siRNA exonuclease. Overexpression leads to increased post transcriptional gene silencing and reduced numbers of 21mers. Macroscopically, the growth rate is increased in overexpressors leading to increased biomass.	Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G67520.8	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT5G13220.6	protein_coding		Encodes JAZ10, a member of the JASMONATE ZIM-domain (JAZ) proteins acting as repressors of jasmonate (JA) signaling. An alternatively spliced form (JAZ10.4) of JAZ10 lacks the Jas domain.	jasmonate-zim-domain protein 10;(source:Araport11)
AT3G26130.3	protein_coding			Cellulase (glycosyl hydrolase family 5) protein;(source:Araport11)
AT1G67520.4	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT1G67520.5	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT1G67520.6	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT1G67520.7	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT2G31830.3	protein_coding		Encodes a 5-inositol-polyphosphate phosphatase, that, in vitro, shows some activity against Ins(1,4,5)P3 and PI(3,4,5)P3, but even higher activity against PI(4,5)P2	endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT3G00370.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G67520.2	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT1G67520.3	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT5G59732.2	antisense_long_noncoding_rna		Natural antisense transcript overlaps with AT5G59730. The RNA is cell-to-cell mobile.	Natural antisense transcript overlaps with AT5G59730;(source:Araport11)
AT3G06436.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G36920.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G36920.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G60130.3	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT2G48150.2	protein_coding		Encodes glutathione peroxidase.	glutathione peroxidase 4;(source:Araport11)
AT1G09530.6	protein_coding		Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a  significant role in controlling light input and function of the circadian  clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.	phytochrome interacting factor 3;(source:Araport11)
AT1G09530.5	protein_coding		Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a  significant role in controlling light input and function of the circadian  clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.	phytochrome interacting factor 3;(source:Araport11)
AT1G09530.4	protein_coding		Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a  significant role in controlling light input and function of the circadian  clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.	phytochrome interacting factor 3;(source:Araport11)
AT1G09530.3	protein_coding		Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a  significant role in controlling light input and function of the circadian  clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.	phytochrome interacting factor 3;(source:Araport11)
AT3G15160.2	protein_coding			AP-5 complex subunit zeta-1;(source:Araport11)
AT1G77210.3	protein_coding		AtSTP14 belongs to the family of sugar transport proteins (AtSTPs)in volved in monosaccharide transport. Heterologous expression in yeast revealed that AtSTP14 is the transporter specifc for galactose and does not transport other monosaccharides such as glucose or fructose.	sugar transporter 14;(source:Araport11)
AT5G11010.4	protein_coding			Pre-mRNA cleavage complex II protein family;(source:Araport11)
AT1G34010.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G04543.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower;(source:Araport11)
AT5G15025.1	protein_coding			paired amphipathic helix Sin3-like protein;(source:Araport11)
AT3G03610.4	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT4G02830.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G27610.8	protein_coding			intracellular protein transporter;(source:Araport11)
AT5G02425.1	long_noncoding_rna			None;(source:Araport11)
AT2G46455.5	protein_coding			OxaA/YidC-like membrane insertion protein;(source:Araport11)
AT5G17230.4	protein_coding		Encodes phytoene synthase that is the rate-limiting enzyme in the carotenoid biosynthetic pathway and that interacts with the ORANGE (OR) protein.  PSY Primes expression is posttransciptionally regulated by OR.	PHYTOENE SYNTHASE;(source:Araport11)
AT1G14640.2	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT4G34570.2	protein_coding		Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene. This is unique in Arabidopsis and protozoa. Other organisms have independent genes for this function.	thymidylate synthase 2;(source:Araport11)
AT4G34570.3	protein_coding		Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene. This is unique in Arabidopsis and protozoa. Other organisms have independent genes for this function.	thymidylate synthase 2;(source:Araport11)
AT5G51740.3	protein_coding		Mitochondrial ATP-independent protease .Important for maintenance of proper function of the oxphos system.	Peptidase family M48 family protein;(source:Araport11)
AT3G46980.6	protein_coding		Encodes an inorganic phosphate transporter (PHT4;3).	phosphate transporter 4;(source:Araport11)
AT5G04020.2	protein_coding			calmodulin binding protein;(source:Araport11)
AT5G44440.2	protein_coding			FAD-binding Berberine family protein;(source:Araport11)
AT4G16070.3	protein_coding			lipase class 3 family protein;(source:Araport11)
AT4G34570.5	protein_coding		Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene. This is unique in Arabidopsis and protozoa. Other organisms have independent genes for this function.	thymidylate synthase 2;(source:Araport11)
AT2G47410.5	protein_coding			WD40 domain-containing protein;(source:Araport11)
AT3G50780.2	protein_coding			BTB/POZ domain protein;(source:Araport11)
AT5G05105.1	long_noncoding_rna			None;(source:Araport11)
AT2G34390.2	protein_coding		aquaporin NIP2.1	NOD26-like intrinsic protein 2;(source:Araport11)
AT2G21880.3	protein_coding			RAB GTPase homolog 7A;(source:Araport11)
AT3G02560.3	protein_coding			Ribosomal protein S7e family protein;(source:Araport11)
AT4G00240.2	protein_coding		member of C2-PLD subfamily	phospholipase D beta 2;(source:Araport11)
AT1G12750.4	protein_coding			RHOMBOID-like protein 6;(source:Araport11)
AT5G66880.2	protein_coding		encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.  Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth.The mRNA is cell-to-cell mobile.	sucrose nonfermenting 1(SNF1)-related protein kinase 2.3;(source:Araport11)
AT3G50480.2	protein_coding		Homolog of RPW8	homolog of RPW8 4;(source:Araport11)
AT1G80315.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G32560.4	protein_coding			paramyosin-like protein;(source:Araport11)
AT4G06165.1	long_noncoding_rna			None;(source:Araport11)
AT4G32360.8	protein_coding			Pyridine nucleotide-disulfide oxidoreductase family protein;(source:Araport11)
AT3G01980.6	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G00660.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G26555.2	protein_coding			FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G26555.3	protein_coding			FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT3G49668.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G49670;(source:Araport11)
AT4G32360.6	protein_coding			Pyridine nucleotide-disulfide oxidoreductase family protein;(source:Araport11)
AT4G32360.3	protein_coding			Pyridine nucleotide-disulfide oxidoreductase family protein;(source:Araport11)
AT4G32360.2	protein_coding			Pyridine nucleotide-disulfide oxidoreductase family protein;(source:Araport11)
AT1G05133.1	long_noncoding_rna			None;(source:Araport11)
AT5G56160.2	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G01490.3	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G01490.4	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT2G39375.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G39375.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G39375.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G27950.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G17450.2	protein_coding			hAT dimerization domain-containing protein;(source:Araport11)
AT5G44090.2	protein_coding			Calcium-binding EF-hand family protein;(source:Araport11)
AT3G53630.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G19280.4	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G19280.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G46270.5	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G03905.1	long_noncoding_rna			None;(source:Araport11)
AT3G17470.3	protein_coding			Ca2+-activated RelA/spot-like protein;(source:Araport11)
AT3G17470.2	protein_coding			Ca2+-activated RelA/spot-like protein;(source:Araport11)
AT5G24165.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G04880.4	pseudogene		pseudogene of ABC transporter family protein	pseudogene of calcium dependent protein kinase 1;(source:Araport11)
AT4G06310.1	small_nucleolar_rna			None;(source:Araport11)
AT1G27960.2	protein_coding		encodes a protein whose C-terminal region is similar to ECT1 and ECT2, which bind to CIPK1.	evolutionarily conserved C-terminal region 9;(source:Araport11)
AT1G77080.10	protein_coding		MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT2G22795.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G22795.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G00640.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G01730.2	protein_coding		a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo	cleavage and polyadenylation specificity factor 73 kDa subunit-II;(source:Araport11)
AT1G06773.1	long_noncoding_rna			None;(source:Araport11)
AT1G35895.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G25380.2	protein_coding		core cell cycle genes	cyclin a2;(source:Araport11)
AT2G00480.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G16545.1	protein_coding			heat shock protein HSP20/alpha crystallin family protein;(source:Araport11)
AT3G21310.2	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G74810.2	protein_coding			HCO3- transporter family;(source:Araport11)
AT1G74810.3	protein_coding			HCO3- transporter family;(source:Araport11)
AT1G74810.4	protein_coding			HCO3- transporter family;(source:Araport11)
AT1G74810.5	protein_coding			HCO3- transporter family;(source:Araport11)
AT1G74810.6	protein_coding			HCO3- transporter family;(source:Araport11)
AT1G74810.7	protein_coding			HCO3- transporter family;(source:Araport11)
AT4G34840.2	protein_coding		Encodes one of the 5 Prime-methylthioadenosine nucleosidases (AT4G38800/MTN1; AT4G34840/MTN2). Double mutant, mtn1-1mtn2-1, retains approximately 14% of the MTN enzyme activity present in the wild type and displays a pleiotropic phenotype that includes altered vasculature and impaired fertility.	Phosphorylase superfamily protein;(source:Araport11)
AT4G34840.3	protein_coding		Encodes one of the 5 Prime-methylthioadenosine nucleosidases (AT4G38800/MTN1; AT4G34840/MTN2). Double mutant, mtn1-1mtn2-1, retains approximately 14% of the MTN enzyme activity present in the wild type and displays a pleiotropic phenotype that includes altered vasculature and impaired fertility.	Phosphorylase superfamily protein;(source:Araport11)
AT4G06105.1	long_noncoding_rna			None;(source:Araport11)
AT1G08670.2	protein_coding			ENTH/VHS family protein;(source:Araport11)
AT4G34840.4	protein_coding		Encodes one of the 5 Prime-methylthioadenosine nucleosidases (AT4G38800/MTN1; AT4G34840/MTN2). Double mutant, mtn1-1mtn2-1, retains approximately 14% of the MTN enzyme activity present in the wild type and displays a pleiotropic phenotype that includes altered vasculature and impaired fertility.	Phosphorylase superfamily protein;(source:Araport11)
AT4G34840.5	protein_coding		Encodes one of the 5 Prime-methylthioadenosine nucleosidases (AT4G38800/MTN1; AT4G34840/MTN2). Double mutant, mtn1-1mtn2-1, retains approximately 14% of the MTN enzyme activity present in the wild type and displays a pleiotropic phenotype that includes altered vasculature and impaired fertility.	Phosphorylase superfamily protein;(source:Araport11)
AT2G46160.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G20900.2	protein_coding		Encodes a tetratricopeptide repeat protein required for cell cycle exit after meiosis II.ms5 mutants are male sterile, pollen tetrads undergo an extra round of division after meiosis II without chromosome replication, resulting in chromosome abnormalities.  Gene product has some similarity to SCP1, a rat synaptonemal complex protein.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G07045.1	long_noncoding_rna			None;(source:Araport11)
AT4G31710.2	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.4;(source:Araport11)
AT2G24650.2	protein_coding			B3 domain-containing protein REM13;(source:Araport11)
AT1G08753.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G65420;(source:Araport11)
AT1G08753.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G65420;(source:Araport11)
AT4G12540.5	protein_coding			hypothetical protein;(source:Araport11)
AT4G12540.4	protein_coding			hypothetical protein;(source:Araport11)
AT4G12540.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G12540.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G07593.1	small_nucleolar_rna			None;(source:Araport11)
AT5G46140.2	protein_coding			hypothetical protein (DUF295);(source:Araport11)
AT4G28020.3	protein_coding			tRNA-thr(GGU) m(6)t(6)A37 methyltransferase;(source:Araport11)
AT3G26590.2	protein_coding			MATE efflux family protein;(source:Araport11)
AT3G09065.1	long_noncoding_rna			None;(source:Araport11)
AT2G06665.1	miRNA_primary_transcript			microRNA ath-MIR5013 precursor;(source:Araport11)
AT4G28690.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G04137.1	protein_coding			phosphogluconate dehydrogenase (decarboxylating), NAD-binding domain protein;(source:Araport11)
AT2G17780.9	protein_coding		Encodes a mechanosensitive channel candidate MCA2. The three-dimensional structure of MCA2 was reconstructed and appears to comprise a small transmembrane region and large cytoplasmic region.	PLAC8 family protein;(source:Araport11)
AT1G65950.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G08845.3	protein_coding			Ribosomal L18p/L5e family protein;(source:Araport11)
AT4G05985.1	long_noncoding_rna			None;(source:Araport11)
AT5G55550.11	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G35155.2	protein_coding			Trypsin family protein;(source:Araport11)
AT2G05065.1	long_noncoding_rna			None;(source:Araport11)
AT5G02365.1	long_noncoding_rna			None;(source:Araport11)
AT4G09275.1	long_noncoding_rna			None;(source:Araport11)
AT5G40820.4	protein_coding		Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.	Ataxia telangiectasia-mutated and RAD3-like protein;(source:Araport11)
AT5G40820.2	protein_coding		Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.	Ataxia telangiectasia-mutated and RAD3-like protein;(source:Araport11)
AT5G40820.3	protein_coding		Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.	Ataxia telangiectasia-mutated and RAD3-like protein;(source:Araport11)
AT1G60525.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G60530;(source:Araport11)
AT4G05965.1	long_noncoding_rna			None;(source:Araport11)
AT5G48545.2	protein_coding		Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.	histidine triad nucleotide-binding 3;(source:Araport11)
AT5G37370.6	protein_coding		encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	PRP38 family protein;(source:Araport11)
AT5G07795.1	long_noncoding_rna			None;(source:Araport11)
AT5G19090.4	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G14490.2	protein_coding			NAC domain containing protein 85;(source:Araport11)
AT5G14490.3	protein_coding			NAC domain containing protein 85;(source:Araport11)
AT1G15460.2	protein_coding		Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.	HCO3- transporter family;(source:Araport11)
AT5G00500.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03045.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G60110.2	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G60110.3	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT2G37010.2	protein_coding		member of NAP subfamily	non-intrinsic ABC protein 12;(source:Araport11)
AT5G63370.7	protein_coding		CDKG1 interacts with the splicing factor RSZ33 to regulate proper splicing of Cals5 Pre-mRNA.	Protein kinase superfamily protein;(source:Araport11)
AT5G63370.6	protein_coding		CDKG1 interacts with the splicing factor RSZ33 to regulate proper splicing of Cals5 Pre-mRNA.	Protein kinase superfamily protein;(source:Araport11)
AT5G63370.9	protein_coding		CDKG1 interacts with the splicing factor RSZ33 to regulate proper splicing of Cals5 Pre-mRNA.	Protein kinase superfamily protein;(source:Araport11)
AT5G63370.8	protein_coding		CDKG1 interacts with the splicing factor RSZ33 to regulate proper splicing of Cals5 Pre-mRNA.	Protein kinase superfamily protein;(source:Araport11)
AT1G28200.2	protein_coding		VirF-interacting protein FIP1	FH interacting protein 1;(source:Araport11)
AT4G06005.1	long_noncoding_rna			None;(source:Araport11)
AT5G01985.1	long_noncoding_rna			None;(source:Araport11)
AT2G32160.4	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G09147.1	long_noncoding_rna			None;(source:Araport11)
AT5G08880.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G58960;(source:Araport11)
AT5G27930.3	protein_coding		EGR2 functions as a negative regulator of plant growth with prominent effect on plant growth during drought stress. EGR2 regulates microtubule organization and likely affects additional cytoskeleton and trafficking processes along the plasma membrane.	Protein phosphatase 2C family protein;(source:Araport11)
AT3G12981.2	pseudogene		pseudogene of F-box family protein	pseudogene of F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G46270.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G06340.4	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G45410.4	protein_coding		Plastid localized protein of unknown function. Mutants are more susceptible to P. syringae and produce less callose upon infection.	zinc finger B-box protein;(source:Araport11)
AT5G45410.5	protein_coding		Plastid localized protein of unknown function. Mutants are more susceptible to P. syringae and produce less callose upon infection.	zinc finger B-box protein;(source:Araport11)
AT1G09927.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G79850;(source:Araport11)
AT1G61667.2	protein_coding			serine protease, putative (Protein of unknown function, DUF538);(source:Araport11)
AT3G06325.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G41762;(source:Araport11)
AT1G07007.1	long_noncoding_rna			None;(source:Araport11)
AT1G56500.2	protein_coding		Encodes a thylakoid membrane protein with thioredoxin-like and beta-propeller domains located in the lumen and a haloacid-dehalogenase domain exposed to the chloroplast stroma. The protein Primes role may be to prevent formation of a slowly reversible form of antenna quenching, thereby maintaining the efficiency of light harvesting.The mRNA is cell-to-cell mobile.	haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT1G56500.3	protein_coding		Encodes a thylakoid membrane protein with thioredoxin-like and beta-propeller domains located in the lumen and a haloacid-dehalogenase domain exposed to the chloroplast stroma. The protein Primes role may be to prevent formation of a slowly reversible form of antenna quenching, thereby maintaining the efficiency of light harvesting.The mRNA is cell-to-cell mobile.	haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT4G20700.2	protein_coding			RNA-binding;(source:Araport11)
AT5G02180.2	protein_coding			Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G79920.4	protein_coding			Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT4G32950.2	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G05237.1	long_noncoding_rna			None;(source:Araport11)
AT1G60810.2	protein_coding		One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase	ATP-citrate lyase A-2;(source:Araport11)
AT2G36792.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G36790;(source:Araport11)
AT4G09770.3	protein_coding			TRAF-like family protein;(source:Araport11)
AT4G12555.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G02910.2	protein_coding		Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The  N-terminal sequence is rich in positive and hydroxylated amino acid residues.	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT2G44810.2	protein_coding		Mutant has defects in anther dehiscence, pollen maturation, and flower opening.  The DAD1 protein is a chloroplastic phospholipase A1 that catalyzes the initial step of jasmonic acid biosynthesis.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G56520.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G56520.5	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G27300.5	protein_coding			glucose-6-phosphate dehydrogenase 5;(source:Araport11)
AT3G06770.4	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT1G56520.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G22770.6	protein_coding			alpha-adaptin;(source:Araport11)
AT5G45800.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G34822.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G45970.2	protein_coding		member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)The mRNA is cell-to-cell mobile.	expansin-like A1;(source:Araport11)
AT4G09685.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G38180;(source:Araport11)
AT2G07165.1	long_noncoding_rna			None;(source:Araport11)
AT1G44575.3	protein_coding		Encoding PSII-S (CP22), a ubiquitous pigment-binding protein associated with photosystem II (PSII) of higher plants. Involved in nonphotochemical quenching rather than in photosynthesis. Mutant has a normal violaxanthin cycle but has a limited capacity of quenching singlet excited chlorophylls and is tolerant to lipid peroxidation.	Chlorophyll A-B binding family protein;(source:Araport11)
AT4G36090.5	protein_coding			oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT4G36090.4	protein_coding			oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT2G33051.8	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33050;(source:Araport11)
AT3G45630.2	protein_coding			RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G31770.2	protein_coding		Encodes a RNA lariat debranching enzyme required for embryogenesis.	debranching enzyme 1;(source:Araport11)
AT2G09065.1	long_noncoding_rna			None;(source:Araport11)
AT1G79250.3	protein_coding			AGC kinase 1.7;(source:Araport11)
AT5G21280.2	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G01150.2	protein_coding		Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils.	RING-H2 finger protein 2B;(source:Araport11)
AT4G04785.1	long_noncoding_rna			None;(source:Araport11)
AT2G01150.3	protein_coding		Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils.	RING-H2 finger protein 2B;(source:Araport11)
AT5G02310.2	protein_coding		Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE).  Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. PRT6 has also been show to be involved in the response to pathogens. The mRNA is cell-to-cell mobile.	proteolysis 6;(source:Araport11)
AT5G02310.3	protein_coding		Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE).  Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. PRT6 has also been show to be involved in the response to pathogens. The mRNA is cell-to-cell mobile.	proteolysis 6;(source:Araport11)
AT1G59560.3	protein_coding		Encodes a chloroplast-localized putative RING-type ubiquitin E3 ligase.	E3 Ubiquitin ligase family protein;(source:Araport11)
AT1G59560.2	protein_coding		Encodes a chloroplast-localized putative RING-type ubiquitin E3 ligase.	E3 Ubiquitin ligase family protein;(source:Araport11)
AT1G59560.4	protein_coding		Encodes a chloroplast-localized putative RING-type ubiquitin E3 ligase.	E3 Ubiquitin ligase family protein;(source:Araport11)
AT5G06930.2	protein_coding			nucleolar-like protein;(source:Araport11)
AT4G32790.3	protein_coding			Exostosin family protein;(source:Araport11)
AT2G09230.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G41120;(source:Araport11)
AT5G19090.5	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G06930.3	protein_coding			nucleolar-like protein;(source:Araport11)
AT1G76350.3	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT1G09937.1	long_noncoding_rna			None;(source:Araport11)
AT3G08005.1	long_noncoding_rna			None;(source:Araport11)
AT3G23090.3	protein_coding		Member of the microtubule regulatory protein WVD2/WDL family WDL3 stabilizes cortical microtubules and  is involved in light induced hypocotyl elongation. WDL3 is ubiquinated by COP1, leading to its degadation in the dark,	TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT1G19630.3	protein_coding			cytochrome P450, family 722, subfamily A, polypeptide 1;(source:Araport11)
AT1G19630.2	protein_coding			cytochrome P450, family 722, subfamily A, polypeptide 1;(source:Araport11)
AT5G44980.4	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT2G20540.2	protein_coding		Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.	mitochondrial editing factor 21;(source:Araport11)
AT2G17970.10	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G44980.3	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G44980.2	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT3G51480.4	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 3.6;(source:Araport11)
AT3G09335.1	long_noncoding_rna			None;(source:Araport11)
AT5G00560.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G60030.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G60030.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G53710.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G61010.3	protein_coding			Ferritin/ribonucleotide reductase-like family protein;(source:Araport11)
AT4G05670.1	long_noncoding_rna			None;(source:Araport11)
AT4G07220.1	long_noncoding_rna			None;(source:Araport11)
AT2G37070.2	protein_coding		Encodes a microtubule-associated protein track growing microtubule plus ends.	TRIO/F-actin-binding protein;(source:Araport11)
AT3G06855.1	long_noncoding_rna			None;(source:Araport11)
AT5G02605.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G16840;(source:Araport11)
AT3G07505.1	long_noncoding_rna			None;(source:Araport11)
AT1G60095.2	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G17550.2	protein_coding		Protein Phosphatase 2C	homology to ABI2;(source:Araport11)
AT5G03820.2	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase family protein;(source:Araport11)
AT3G05695.1	long_noncoding_rna			None;(source:Araport11)
AT1G07587.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G49720;(source:Araport11)
AT3G07155.1	long_noncoding_rna			None;(source:Araport11)
AT1G70180.3	protein_coding			Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT1G28080.2	protein_coding			RING finger protein;(source:Araport11)
AT1G70180.4	protein_coding			Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT5G11450.2	protein_coding			PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein);(source:Araport11)
AT4G09115.1	long_noncoding_rna			None;(source:Araport11)
AT1G50110.2	protein_coding		Encodes a cytosolic branched-chain aminotransferase that acts on Leu, Ile, Val and also on Met. Together with BCAT4 and BCAT3, it is involved in methionine salvage and glucosinolate biosynthesis.	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT4G39160.3	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT3G46980.8	protein_coding		Encodes an inorganic phosphate transporter (PHT4;3).	phosphate transporter 4;(source:Araport11)
AT2G04825.1	long_noncoding_rna			None;(source:Araport11)
AT5G27630.4	protein_coding		Acyl-CoA binding protein with high affinity for   oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.	acyl-CoA binding protein 5;(source:Araport11)
AT1G48870.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G48870.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G20790.4	protein_coding			clathrin adaptor complexes medium subunit family protein;(source:Araport11)
AT5G27630.2	protein_coding		Acyl-CoA binding protein with high affinity for   oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.	acyl-CoA binding protein 5;(source:Araport11)
AT5G27630.3	protein_coding		Acyl-CoA binding protein with high affinity for   oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.	acyl-CoA binding protein 5;(source:Araport11)
AT5G08750.10	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G44560.4	protein_coding			SNF7 family protein;(source:Araport11)
AT2G30740.14	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G07355.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G46220;(source:Araport11)
AT3G04135.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G21520;(source:Araport11)
AT2G07655.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G20620.2	protein_coding		encodes a ubiquitin polyprotein.	ubiquitin 4;(source:Araport11)
AT1G60140.3	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	trehalose phosphate synthase;(source:Araport11)
AT1G60140.2	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	trehalose phosphate synthase;(source:Araport11)
AT3G22460.2	protein_coding		Encodes a member of a family of genes with O-acetylserine(thiol)lyase activity.	O-acetylserine (thiol) lyase (OAS-TL) isoform A2;(source:Araport11)
AT5G06690.4	protein_coding		Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma.  Contains a WCRKC motif. Functions in redox cascade with 2CPA and 2CPB via the ferredoxin-thioredoxin reductase (FTR)/thioredoxin (Trx) pathway to mediate the light-responsive reductive control of target proteins. Oxidizes redox-regulated proteins.	WCRKC thioredoxin 1;(source:Araport11)
AT4G31350.3	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G60140.6	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	trehalose phosphate synthase;(source:Araport11)
AT1G60140.5	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	trehalose phosphate synthase;(source:Araport11)
AT1G60140.4	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	trehalose phosphate synthase;(source:Araport11)
AT2G06605.1	long_noncoding_rna			None;(source:Araport11)
AT5G04320.4	protein_coding		Encodes a protein that protects meiotic centromere cohesion.	Shugoshin C terminus;(source:Araport11)
AT3G04115.1	long_noncoding_rna			None;(source:Araport11)
AT1G55970.2	protein_coding		HAC4 is most likely to  be an expressed pseudogene that lacks HAT function. there is a  single nucleotide deletion in both the HAC4 genomic and  cDNA sequences relative to its homologs. The resulting  frameshift within the open reading frame causes a  stop codon to occur within the predicted acetyltransferase  catalytic domain.	histone acetyltransferase of the CBP family 4;(source:Araport11)
AT3G04443.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G04443.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G04443.5	protein_coding			hypothetical protein;(source:Araport11)
AT3G04443.4	protein_coding			hypothetical protein;(source:Araport11)
AT3G46180.2	protein_coding			UDP-galactose transporter 5;(source:Araport11)
AT3G08025.1	long_noncoding_rna			None;(source:Araport11)
AT1G05420.2	protein_coding			ovate family protein 12;(source:Araport11)
AT2G43040.2	protein_coding		encodes a calmodulin-binding protein that is expressed specifically in pollen and is required for pollen development.	tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT1G06427.1	long_noncoding_rna			None;(source:Araport11)
AT5G16100.2	protein_coding			RWP-RK domain protein;(source:Araport11)
AT4G09175.1	long_noncoding_rna			None;(source:Araport11)
AT2G22660.3	protein_coding		Encodes a member of a family of DUF1399 domain containing proteins. GRDP1 is involved in germination and response to ABA. Loss of function mutants have reduced germination in the presence of osmotic stressors.	DNA-binding protein, putative (duplicated DUF1399);(source:Araport11)
AT4G11820.3	protein_coding		Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant.	hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase;(source:Araport11)
AT2G42380.3	protein_coding		Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT1G20620.6	protein_coding		Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.The mRNA is cell-to-cell mobile.It is a target for SUMOlaytion (PMID: 21413927),	catalase 3;(source:Araport11)
AT1G20620.7	protein_coding		Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.The mRNA is cell-to-cell mobile.It is a target for SUMOlaytion (PMID: 21413927),	catalase 3;(source:Araport11)
AT2G42380.4	protein_coding		Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G42380.5	protein_coding		Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G38010.3	protein_coding			Neutral/alkaline non-lysosomal ceramidase;(source:Araport11)
AT3G01155.1	small_nucleolar_rna			None;(source:Araport11)
AT4G05905.1	other_rna			None;(source:Araport11)
AT4G35190.2	protein_coding			Putative lysine decarboxylase family protein;(source:Araport11)
AT1G29785.3	antisense_long_noncoding_rna		Natural antisense transcript overlaps with AT1G29780. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT1G29780;(source:Araport11)
AT3G27460.5	protein_coding			SGF29 tudor-like domain-containing protein;(source:Araport11)
AT2G09150.1	miRNA_primary_transcript			microRNA ath-MIR8171 precursor;(source:Araport11)
AT5G09690.6	protein_coding		Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT5G09690.7	protein_coding		Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT5G09690.5	protein_coding		Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT1G08597.1	miRNA_primary_transcript			microRNA ath-MIR5652 precursor;(source:Araport11)
AT1G03960.3	protein_coding			Calcium-binding EF hand family protein;(source:Araport11)
AT5G09690.8	protein_coding		Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT5G09690.9	protein_coding		Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT5G08870.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G58620;(source:Araport11)
AT1G03960.7	protein_coding			Calcium-binding EF hand family protein;(source:Araport11)
AT5G45150.3	protein_coding			RNAse THREE-like protein 3;(source:Araport11)
AT5G45150.2	protein_coding			RNAse THREE-like protein 3;(source:Araport11)
AT5G03045.1	long_noncoding_rna			None;(source:Araport11)
AT3G07295.1	long_noncoding_rna			None;(source:Araport11)
AT3G01585.1	long_noncoding_rna			None;(source:Araport11)
AT2G32180.2	protein_coding			plastid transcriptionally active 18;(source:Araport11)
AT1G09123.1	long_noncoding_rna			None;(source:Araport11)
AT2G03567.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G29410.2	protein_coding			Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G03695.1	other_rna			None;(source:Araport11)
AT3G16220.2	protein_coding			Putative eukaryotic LigT;(source:Araport11)
AT4G31350.4	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT1G50380.2	protein_coding			Prolyl oligopeptidase family protein;(source:Araport11)
AT5G25470.3	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT1G07457.1	long_noncoding_rna			None;(source:Araport11)
AT4G06920.1	long_noncoding_rna			None;(source:Araport11)
AT3G19900.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G29100.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT2G19440.2	protein_coding		Homolog of ZET, an atypical  &#946;-1,3 glucanase. Differentially expressed in Ler (very low) vs Col (very high) backgrounds.	O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT1G23690.4	protein_coding			hypothetical protein (Domain of unknown function DUF220);(source:Araport11)
AT3G22333.1	protein_coding			F-box/kelch-repeat protein;(source:Araport11)
AT1G33400.3	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G01635.1	long_noncoding_rna			None;(source:Araport11)
AT4G07625.1	small_nucleolar_rna			None;(source:Araport11)
AT3G26085.4	protein_coding			CAAX amino terminal protease family protein;(source:Araport11)
AT5G04325.1	long_noncoding_rna			None;(source:Araport11)
AT5G08310.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G63800.2	protein_coding			ubiquitin-conjugating enzyme 5;(source:Araport11)
AT3G19920.2	protein_coding			BTB/POZ domain protein;(source:Araport11)
AT2G08925.1	long_noncoding_rna			None;(source:Araport11)
AT1G07119.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G07120;(source:Araport11)
AT1G07119.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G07120;(source:Araport11)
AT1G07119.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G07120;(source:Araport11)
AT1G07119.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G07120;(source:Araport11)
AT3G53800.2	protein_coding		Encodes one of the Arabidopsis orthologs of the human Hsp70-binding protein 1 (HspBP-1) and yeast Fes1p: Fes1A (AT3G09350), Fes1B (AT3G53800), Fes1C (AT5G02150).	Fes1B;(source:Araport11)
AT4G28680.6	protein_coding		Encodes a stress-induced tyrosine   decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine.  Recombinant TyrDC forms tetramers.	L-tyrosine decarboxylase;(source:Araport11)
AT1G20160.3	protein_coding		Encodes two isoforms. One (SBT5.2(a) ) is a secreted, cell wall localized subtilisin-like serine protease that is involved in regulation of stomatal development. The second isoform (SBT5.2(b) is localized to endosomes.	Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT5G43155.1	protein_coding			QWRF motif protein;(source:Araport11)
AT4G31860.3	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT3G09905.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G63140;(source:Araport11)
AT5G04770.2	protein_coding		Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.	cationic amino acid transporter 6;(source:Araport11)
AT5G04770.3	protein_coding		Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.	cationic amino acid transporter 6;(source:Araport11)
AT5G24580.5	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G24580.4	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G03690.4	protein_coding			Aldolase superfamily protein;(source:Araport11)
AT2G38460.7	protein_coding		Encodes IRON REGULATED1 (IREG1/FPN1), one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.	iron regulated 1;(source:Araport11)
AT2G38460.4	protein_coding		Encodes IRON REGULATED1 (IREG1/FPN1), one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.	iron regulated 1;(source:Araport11)
AT2G38460.5	protein_coding		Encodes IRON REGULATED1 (IREG1/FPN1), one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.	iron regulated 1;(source:Araport11)
AT5G47970.3	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT1G73310.2	protein_coding			serine carboxypeptidase-like 4;(source:Araport11)
AT1G73310.3	protein_coding			serine carboxypeptidase-like 4;(source:Araport11)
AT3G54750.4	protein_coding			downstream neighbor of Son;(source:Araport11)
AT2G07850.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G22850;(source:Araport11)
AT1G05017.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G13690;(source:Araport11)
AT1G67060.3	protein_coding			peptidase M50B-like protein;(source:Araport11)
AT1G09725.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09725.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G06265.1	long_noncoding_rna			None;(source:Araport11)
AT5G47630.3	protein_coding		Encodes a member of the mitochondrial acyl carrier protein (ACP) family.  Its role is currently obscure as it is weakly expressed and has not yet been identified by mitochondrial proteome analysis.	mitochondrial acyl carrier protein 3;(source:Araport11)
AT1G47710.2	protein_coding			Serine protease inhibitor (SERPIN) family protein;(source:Araport11)
AT4G17230.2	protein_coding		Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family. Regulated by heat shock.	SCARECROW-like 13;(source:Araport11)
AT4G10890.3	protein_coding			DDE family endonuclease;(source:Araport11)
AT1G49032.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G05895.1	long_noncoding_rna			None;(source:Araport11)
AT1G20570.3	protein_coding			Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT4G10890.2	protein_coding			DDE family endonuclease;(source:Araport11)
AT4G06380.1	long_noncoding_rna			None;(source:Araport11)
AT1G74545.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74540;(source:Araport11)
AT2G07870.1	long_noncoding_rna			None;(source:Araport11)
AT1G07447.1	long_noncoding_rna			None;(source:Araport11)
AT3G00630.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G08113.1	small_nucleolar_rna			None;(source:Araport11)
AT3G08510.4	protein_coding		Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol.  It is involved in auxin biosynthesis and signaling, modulating development of both male and female gametophytes. It also regulates MAMP-triggered immunity by modulating ROS production.	phospholipase C 2;(source:Araport11)
AT5G28030.5	protein_coding		Encodes a novel l-cysteine desulfhydrase involved in cysteine homeostasis that catalyzes the desulfuration of Cys, instead of the synthesis of Cys like the OASTL, to produce sulfide plus ammonia and pyruvate.	L-cysteine desulfhydrase 1;(source:Araport11)
AT5G28030.4	protein_coding		Encodes a novel l-cysteine desulfhydrase involved in cysteine homeostasis that catalyzes the desulfuration of Cys, instead of the synthesis of Cys like the OASTL, to produce sulfide plus ammonia and pyruvate.	L-cysteine desulfhydrase 1;(source:Araport11)
AT3G14640.2	protein_coding		putative cytochrome P450	cytochrome P450, family 72, subfamily A, polypeptide 10;(source:Araport11)
AT3G48450.2	protein_coding			RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT2G08690.1	long_noncoding_rna			None;(source:Araport11)
AT1G04383.1	long_noncoding_rna			None;(source:Araport11)
AT3G50040.4	protein_coding			hypothetical protein;(source:Araport11)
AT3G50040.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G50040.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G06437.1	long_noncoding_rna			None;(source:Araport11)
AT5G61190.9	protein_coding			putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein;(source:Araport11)
AT3G08350.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G53530;(source:Araport11)
AT3G09565.1	long_noncoding_rna			None;(source:Araport11)
AT4G07210.1	long_noncoding_rna			None;(source:Araport11)
AT3G06915.1	long_noncoding_rna			None;(source:Araport11)
AT2G07645.1	long_noncoding_rna			None;(source:Araport11)
AT3G13810.5	protein_coding			indeterminate(ID)-domain 11;(source:Araport11)
AT5G15330.2	protein_coding		Encodes a protein with a single SYG1/Pho81/XPR1 (SPX) domain that localizes to both the cytosol and nucleus, acting as a dose-dependent modulator of PHR1-dependent and PHR1-independent phosphate-starvation responses in shoots. SPX4 prevents translocation of PHR1 (AT4G28610) to the nucleus in a dose- and Pi-dependent manner. In contrast to SPX1, SPX4 modulates rather than suppresses phosphate-starvation response (PSR) gene expression.	SPX domain-containing protein 4;(source:Araport11)
AT2G08160.1	long_noncoding_rna			None;(source:Araport11)
AT5G61960.3	protein_coding		A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.	MEI2-like protein 1;(source:Araport11)
AT3G43790.5	protein_coding			zinc induced facilitator-like 2;(source:Araport11)
AT3G43790.4	protein_coding			zinc induced facilitator-like 2;(source:Araport11)
AT5G61960.6	protein_coding		A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.	MEI2-like protein 1;(source:Araport11)
AT5G61960.7	protein_coding		A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.	MEI2-like protein 1;(source:Araport11)
AT5G61960.4	protein_coding		A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.	MEI2-like protein 1;(source:Araport11)
AT5G61960.5	protein_coding		A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.	MEI2-like protein 1;(source:Araport11)
AT1G72755.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G08035.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G08035.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G65560.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G65560.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G18670.2	protein_coding		Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence.  Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.	Protein kinase superfamily protein;(source:Araport11)
AT5G07695.1	long_noncoding_rna			None;(source:Araport11)
AT3G04055.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G21200;(source:Araport11)
AT2G28560.6	protein_coding		Encodes a protein of the RAD51B family involved in double stranded DNA repair. Homozygous mutant plants show increased sensitivity to mitomycin which induces DS breaks.	DNA repair (Rad51) family protein;(source:Araport11)
AT2G25840.4	protein_coding			Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT2G28560.5	protein_coding		Encodes a protein of the RAD51B family involved in double stranded DNA repair. Homozygous mutant plants show increased sensitivity to mitomycin which induces DS breaks.	DNA repair (Rad51) family protein;(source:Araport11)
AT2G08380.1	long_noncoding_rna			None;(source:Araport11)
AT1G13040.2	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G25470.uORF1-2	uORF			Derives_from AT1G25470;(source:Araport11)
AT2G44570.2	protein_coding			glycosyl hydrolase 9B12;(source:Araport11)
AT5G64760.3	protein_coding		Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a.	regulatory particle non-ATPase subunit 5B;(source:Araport11)
AT1G18670.3	protein_coding		Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence.  Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.	Protein kinase superfamily protein;(source:Araport11)
AT1G61150.11	protein_coding			LisH and RanBPM domains containing protein;(source:Araport11)
AT1G61150.10	protein_coding			LisH and RanBPM domains containing protein;(source:Araport11)
AT3G28030.4	protein_coding		Required for repair of pyrimidine-pyrimidinone (6-4) dimers.The mRNA is cell-to-cell mobile.	5-3 exonuclease family protein;(source:Araport11)
AT1G04413.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G05720;(source:Araport11)
AT3G12940.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G12940.3	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G33051.9	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33050;(source:Araport11)
AT3G01990.11	protein_coding		Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.	ACT domain repeat 6;(source:Araport11)
AT5G05355.1	novel_transcribed_region			novel transcribed region; detected in receptacle;(source:Araport11)
AT3G51075.8	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT3G51075.9	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT4G04865.1	long_noncoding_rna			None;(source:Araport11)
AT1G64200.2	protein_coding			vacuolar H+-ATPase subunit E isoform 3;(source:Araport11)
AT1G64200.3	protein_coding			vacuolar H+-ATPase subunit E isoform 3;(source:Araport11)
AT3G04675.1	long_noncoding_rna			None;(source:Araport11)
AT3G51075.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT3G51075.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT3G51075.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT3G51075.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT3G51075.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT3G51075.7	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT5G19310.2	protein_coding		Encodes CHR23. Overexpression results in increased variability of growth and gene expression.	homeotic protein regulator;(source:Araport11)
AT2G08305.1	long_noncoding_rna			None;(source:Araport11)
AT5G17310.3	protein_coding			UDP-glucose pyrophosphorylase 2;(source:Araport11)
AT1G07517.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G48970;(source:Araport11)
AT3G14590.4	protein_coding		Ca2+-dependent lipid-binding protein	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G06115.1	small_nucleolar_rna			None;(source:Araport11)
AT3G05255.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, aerial, shoot apical meristem;(source:Araport11)
AT4G35485.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G22935.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06073.1	long_noncoding_rna			None;(source:Araport11)
AT1G09407.1	long_noncoding_rna			None;(source:Araport11)
AT1G14870.2	protein_coding		PCR2 encodes a membrane protein involved in zinc transport and detoxification.	PLANT CADMIUM RESISTANCE 2;(source:Araport11)
AT3G16920.2	protein_coding		Encodes a chitinase-like protein expressed predominantly in stems. Mutants accumulate ligning in etiolated hypocotyls.	chitinase-like protein;(source:Araport11)
AT1G24485.4	protein_coding			ER protein carbohydrate-binding protein;(source:Araport11)
AT2G19160.2	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT2G20362.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G23230.3	protein_coding		Mediator tail subunit, involved in transcriptional regulation.	mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT2G04705.1	other_rna			None;(source:Araport11)
AT3G48430.2	protein_coding		Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.The mRNA is cell-to-cell mobile.	relative of early flowering 6;(source:Araport11)
AT5G14000.3	protein_coding			NAC domain containing protein 84;(source:Araport11)
AT2G02695.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G09087.1	small_nucleolar_rna			None;(source:Araport11)
AT3G49410.3	protein_coding			Transcription factor IIIC, subunit 5;(source:Araport11)
AT4G37080.4	protein_coding			ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT3G27440.3	protein_coding		One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 5;(source:Araport11)
AT5G08650.2	protein_coding			Small GTP-binding protein;(source:Araport11)
AT5G25880.3	protein_coding		The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals.	NADP-malic enzyme 3;(source:Araport11)
AT5G25880.2	protein_coding		The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals.	NADP-malic enzyme 3;(source:Araport11)
AT3G57660.2	protein_coding		Encodes a subunit of RNA polymerase I (aka RNA polymerase A).The mRNA is cell-to-cell mobile.	nuclear RNA polymerase A1;(source:Araport11)
AT5G09885.1	long_noncoding_rna			None;(source:Araport11)
AT3G63400.4	protein_coding			Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G36060.4	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G67410.2	protein_coding			transcriptional regulator of RNA polII, SAGA, subunit;(source:Araport11)
AT3G05215.1	other_rna			None;(source:Araport11)
AT5G01695.1	long_noncoding_rna			None;(source:Araport11)
AT5G06740.2	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G02305.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G10230;(source:Araport11)
AT5G39340.2	protein_coding		Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	histidine-containing phosphotransmitter 3;(source:Araport11)
AT5G52680.2	protein_coding			Copper transport protein family;(source:Araport11)
AT4G06860.1	long_noncoding_rna			None;(source:Araport11)
AT3G06025.1	long_noncoding_rna			None;(source:Araport11)
AT2G28305.3	protein_coding			Putative lysine decarboxylase family protein;(source:Araport11)
AT1G08187.2	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling;(source:Araport11)
AT1G09253.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G71480;(source:Araport11)
AT2G07425.1	long_noncoding_rna			None;(source:Araport11)
AT1G08187.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling;(source:Araport11)
AT5G61300.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G66652.3	protein_coding			fip1 motif-containing protein;(source:Araport11)
AT2G23985.23	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.22	protein_coding			hypothetical protein;(source:Araport11)
AT1G76170.3	protein_coding			2-thiocytidine tRNA biosynthesis protein, TtcA;(source:Araport11)
AT2G23985.20	protein_coding			hypothetical protein;(source:Araport11)
AT1G75420.2	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G23985.26	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.25	protein_coding			hypothetical protein;(source:Araport11)
AT2G23985.24	protein_coding			hypothetical protein;(source:Araport11)
AT1G20696.5	protein_coding		Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.The mRNA is cell-to-cell mobile.	high mobility group B3;(source:Araport11)
AT1G20696.4	protein_coding		Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.The mRNA is cell-to-cell mobile.	high mobility group B3;(source:Araport11)
AT4G35900.2	protein_coding		bZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT3G05830.3	protein_coding		Encodes alpha-helical IF (intermediate filament)-like protein.NEAP1 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.	spindle pole body component-like protein;(source:Araport11)
AT2G35390.4	protein_coding			Phosphoribosyltransferase family protein;(source:Araport11)
AT4G18020.8	protein_coding		Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).	CheY-like two-component responsive regulator family protein;(source:Araport11)
AT3G46617.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G09890.3	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT4G05025.1	long_noncoding_rna			None;(source:Araport11)
AT5G60470.2	protein_coding			C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT3G48040.2	protein_coding		Encodes a member of the Rop subfamily of Rho GTPases in Arabidopsis that contains a putative farnesylation motif.  It is localized to the plasma membrane and involved in the negative regulation of ABA signalling.	RHO-related protein from plants 10;(source:Araport11)
AT2G14260.3	protein_coding		encodes proline iminopeptidase	proline iminopeptidase;(source:Araport11)
AT3G44280.2	protein_coding			peptidyl-prolyl cis-trans isomerase G;(source:Araport11)
AT4G03955.1	antisense_rna			Natural antisense transcript overlaps with AT4G01670;(source:Araport11)
AT1G08197.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT2G14260.4	protein_coding		encodes proline iminopeptidase	proline iminopeptidase;(source:Araport11)
AT1G08197.2	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT1G05870.10	protein_coding			hypothetical protein (DUF1685);(source:Araport11)
AT1G05870.11	protein_coding			hypothetical protein (DUF1685);(source:Araport11)
AT1G05870.12	protein_coding			hypothetical protein (DUF1685);(source:Araport11)
AT5G10520.2	protein_coding			ROP binding protein kinases 1;(source:Araport11)
AT5G23040.2	protein_coding		Encodes a protein that enables protochlorophillide Primes binding to pPORA Primes transit sequence, regulating pPORA Primes translocation into the plastid stroma, and blocking movement of the translocating polypeptide chain back into the cytosol. Causes Bax mediated lethality in yeast by generating reactive oxygen species and this effect is suppressed by AtBI-1.	cell growth defect factor-like protein (DUF3353);(source:Araport11)
AT4G22410.2	protein_coding			U4/U6.U5 tri-snRNP-associated-like protein;(source:Araport11)
AT3G09195.1	long_noncoding_rna			None;(source:Araport11)
AT1G50500.5	protein_coding		encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress.	Membrane trafficking VPS53 family protein;(source:Araport11)
AT2G40820.5	protein_coding			stomatal closure actin-binding-like protein;(source:Araport11)
AT2G40820.4	protein_coding			stomatal closure actin-binding-like protein;(source:Araport11)
AT2G40820.3	protein_coding			stomatal closure actin-binding-like protein;(source:Araport11)
AT2G40820.2	protein_coding			stomatal closure actin-binding-like protein;(source:Araport11)
AT4G05745.1	long_noncoding_rna			None;(source:Araport11)
AT5G06875.1	long_noncoding_rna			None;(source:Araport11)
AT2G04785.1	long_noncoding_rna			None;(source:Araport11)
AT4G09435.2	protein_coding			disease resistance protein (TIR-NBS-LRR class) family protein;(source:Araport11)
AT4G09435.1	protein_coding			disease resistance protein (TIR-NBS-LRR class) family protein;(source:Araport11)
AT4G01000.2	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT4G28220.2	protein_coding			NAD(P)H dehydrogenase B1;(source:Araport11)
AT1G09603.1	long_noncoding_rna			None;(source:Araport11)
AT3G57587.1	protein_coding			Ta11-like non-LTR retrotransposon;(source:Araport11)
AT1G57800.2	protein_coding		predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH3/VIM5 cDNA through RT-PCR were unsuccessful and only one Arabidopsis EST is associated with this locus. A paternally expressed imprinted gene.	zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT4G16983.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G19070.2	protein_coding			Putative membrane lipoprotein;(source:Araport11)
AT5G07240.2	protein_coding		Member of IQ67 (CaM binding) domain containing family.	IQ-domain 24;(source:Araport11)
AT1G09967.1	long_noncoding_rna			None;(source:Araport11)
AT3G29970.3	protein_coding			B12D protein;(source:Araport11)
AT3G09485.1	long_noncoding_rna			None;(source:Araport11)
AT5G04775.1	long_noncoding_rna			None;(source:Araport11)
AT5G01845.1	small_nuclear_rna			U6;(source:Araport11)
AT4G33740.4	protein_coding			myb-like protein X;(source:Araport11)
AT4G33740.5	protein_coding			myb-like protein X;(source:Araport11)
AT5G06845.1	long_noncoding_rna			None;(source:Araport11)
AT1G07357.1	miRNA_primary_transcript			microRNA ath-MIR5664 precursor;(source:Araport11)
AT1G09145.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G04915.1	miRNA_primary_transcript			microRNA ath-MIR5027 precursor;(source:Araport11)
AT4G24810.4	protein_coding		similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)	Protein kinase superfamily protein;(source:Araport11)
AT4G06045.1	long_noncoding_rna			None;(source:Araport11)
AT1G05327.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17750;(source:Araport11)
AT2G46800.4	protein_coding		Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis.	zinc transporter;(source:Araport11)
AT3G53750.2	protein_coding		Member of the Actin gene family. Expressed in mature pollen.	actin 3;(source:Araport11)
AT5G51915.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G41790.2	protein_coding		CIP1 physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. IN the root the protein is found around epidermal cells. Expression is induced by ABA and osmotic stress but is not regulated by light. Loss of function mutants are also sensitive to osmotic stress and are somewhat ABA insensitive. The mRNA is cell-to-cell mobile.	COP1-interactive protein 1;(source:Araport11)
AT5G05515.1	long_noncoding_rna			None;(source:Araport11)
AT1G06147.1	long_noncoding_rna			None;(source:Araport11)
AT4G08865.1	long_noncoding_rna			None;(source:Araport11)
AT1G63206.2	protein_coding			Cystatin/monellin superfamily protein;(source:Araport11)
AT3G02555.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G53210.2	protein_coding		Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana.  Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions.  SPCH is a substrate of a kinase MPK3 and MPK6. Its transcript levels change after inducing MUTE expression in a mute background.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G76670.2	protein_coding			Nucleotide-sugar transporter family protein;(source:Araport11)
AT1G09470.3	protein_coding		NEAP3 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.	myosin heavy chain, cardiac protein;(source:Araport11)
AT1G02670.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G08915.1	long_noncoding_rna			None;(source:Araport11)
AT1G02270.2	protein_coding			Calcium-binding endonuclease/exonuclease/phosphatase family;(source:Araport11)
AT4G03085.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G02710.4	protein_coding		Encodes a putative blue light receptor protein.	PAS/LOV protein B;(source:Araport11)
AT4G03085.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03085.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G07347.1	long_noncoding_rna			None;(source:Araport11)
AT4G03085.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03085.7	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03085.6	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03085.9	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03085.8	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G04110.2	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT3G62500.2	protein_coding			F-box protein RMF;(source:Araport11)
AT3G03425.1	small_nucleolar_rna			None;(source:Araport11)
AT5G56640.2	protein_coding		Myo-Inositol Oxygenase gene family	myo-inositol oxygenase 5;(source:Araport11)
AT4G14990.2	protein_coding			Topoisomerase II-associated protein PAT1;(source:Araport11)
AT5G24340.2	protein_coding			3-5 exonuclease domain-containing protein;(source:Araport11)
AT5G02520.2	protein_coding		Arabidopsis KNL2 localizes at chromocenters during all stages of the mitotic cell cycle, except from metaphase to mid-anaphase, and its level is strictly regulated by the proteasome degradation pathway. Knockout of KNL2 via a T-DNA insertion resulted in a reduced amount of centromeric cenH3, mitotic and meiotic abnormalities, and reduced growth and fertility.	dentin sialophosphoprotein-like protein;(source:Araport11)
AT1G74170.2	protein_coding			receptor like protein 13;(source:Araport11)
AT1G35350.2	protein_coding			EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT5G48775.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G48770;(source:Araport11)
AT5G16610.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G67440.3	protein_coding		A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590).  Involved in auxin-mediated organogenesis.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G06675.1	long_noncoding_rna			None;(source:Araport11)
AT4G40000.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G11590.2	protein_coding			golgin family A protein;(source:Araport11)
AT2G09390.1	long_noncoding_rna			None;(source:Araport11)
AT3G06820.3	protein_coding			Mov34/MPN/PAD-1 family protein;(source:Araport11)
AT3G16230.12	protein_coding			Putative eukaryotic LigT;(source:Araport11)
AT3G57780.5	protein_coding			nucleolar-like protein;(source:Araport11)
AT3G57780.4	protein_coding			nucleolar-like protein;(source:Araport11)
AT5G07255.1	long_noncoding_rna			None;(source:Araport11)
AT5G27920.uORF1	uORF			Derives_from AT5G27920;(source:Araport11)
AT3G57780.3	protein_coding			nucleolar-like protein;(source:Araport11)
AT2G09125.1	long_noncoding_rna			None;(source:Araport11)
AT5G06945.1	long_noncoding_rna			None;(source:Araport11)
AT2G28230.2	protein_coding		Encodes one of the subunits of the head domain of the MEDIATOR complex. The complex conveys transcriptional signals by acting as an intermediary between transcription factors and RNA polymerase II. Together with MED18, MED20 is proposed to control the balance of salicylic acid and jasmonate associated defense pathways. It is involved in miRNA biogenesis by recruiting Pol II to promoters of miRNA genes.	TATA-binding related factor (TRF) of subunit 20 of Mediator complex;(source:Araport11)
AT2G23910.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G23910.3	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G49480.2	protein_coding			F-box/FBD/LRR protein;(source:Araport11)
AT2G28060.3	protein_coding		Component of the regulatory subunit of SNF1-related protein kinase. As part of the regulatory complex it binds maltose which promotes kinase activity.	5-AMP-activated protein kinase beta-2 subunit protein;(source:Araport11)
AT2G23910.4	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G03575.1	long_noncoding_rna			None;(source:Araport11)
AT1G04700.3	protein_coding			PB1 domain-containing protein tyrosine kinase;(source:Araport11)
AT1G04700.2	protein_coding			PB1 domain-containing protein tyrosine kinase;(source:Araport11)
AT3G53850.2	protein_coding			Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G33180.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G07860.3	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT5G44180.3	protein_coding			Homeodomain-like transcriptional regulator;(source:Araport11)
AT3G07130.2	protein_coding		Encodes PAP15, a purple acid phosphatase with phytase activity.  Expression of PAP15 is developmentally and temporally regulated, with strong expression at the early stages of seedling growth and pollen germination. The expression is also organ/tissue-specific, with strongest expression in the vasculature, pollen grains, and roots. Recombinant PAP protein exhibits broad substrate specificity with moderate phytase activity. PAP15 likely mobilizes phosphorus reserves in plants, particularly during seed and pollen germination.	purple acid phosphatase 15;(source:Araport11)
AT5G08465.1	long_noncoding_rna			None;(source:Araport11)
AT1G09565.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G08547.1	antisense_rna			Natural antisense transcript overlaps with AT1G62610;(source:Araport11)
AT3G01080.3	protein_coding		member of WRKY Transcription Factor; Group I	WRKY DNA-binding protein 58;(source:Araport11)
AT3G01080.2	protein_coding		member of WRKY Transcription Factor; Group I	WRKY DNA-binding protein 58;(source:Araport11)
AT1G64680.2	protein_coding			beta-carotene isomerase D27;(source:Araport11)
AT1G62981.3	protein_coding			transmembrane protein, putative (DUF1191);(source:Araport11)
AT4G06915.1	miRNA_primary_transcript			microRNA ath-MIR4240 precursor;(source:Araport11)
AT5G27830.6	protein_coding			folate receptor family protein;(source:Araport11)
AT5G37072.5	pseudogene			pseudogene of Ribosomal protein S4 (RPS4A) family protein;(source:Araport11)
AT1G03620.3	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT1G03620.2	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT1G03620.5	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT1G03620.4	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT1G03620.7	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT1G03620.6	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT1G03620.9	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT1G03620.8	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT4G24460.4	protein_coding		Encodes one of the CRT-Like transporters (CLT1/AT5G19380, CLT2/AT4G24460, CLT3/AT5G12170). Required for glutathione homeostasis and stress responses.  Mutants lacking these transporters are heavy metal-sensitive, glutathione(GSH)-deficient, and hypersensitive to Phytophthora infection.	CRT (chloroquine-resistance transporter)-like transporter 2;(source:Araport11)
AT4G13960.4	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G04023.1	long_noncoding_rna			None;(source:Araport11)
AT3G12220.3	protein_coding			serine carboxypeptidase-like 16;(source:Araport11)
AT3G12220.2	protein_coding			serine carboxypeptidase-like 16;(source:Araport11)
AT3G16270.2	protein_coding			ENTH/VHS family protein;(source:Araport11)
AT3G16270.3	protein_coding			ENTH/VHS family protein;(source:Araport11)
AT4G37950.2	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT1G52070.2	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G09853.1	long_noncoding_rna			None;(source:Araport11)
AT3G04175.1	small_nucleolar_rna			None;(source:Araport11)
AT3G62260.3	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT3G12200.3	protein_coding		Encodes AtNek7, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 7;(source:Araport11)
AT1G04007.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G01160;(source:Araport11)
AT1G07487.1	small_nucleolar_rna			None;(source:Araport11)
AT2G38780.13	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT1G09977.1	long_noncoding_rna			None;(source:Araport11)
AT5G04025.1	long_noncoding_rna			None;(source:Araport11)
AT3G12200.4	protein_coding		Encodes AtNek7, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 7;(source:Araport11)
AT2G04975.1	long_noncoding_rna			None;(source:Araport11)
AT3G17690.3	protein_coding		member of Cyclic nucleotide gated channel family	cyclic nucleotide gated channel 19;(source:Araport11)
AT1G04267.1	small_nucleolar_rna			None;(source:Araport11)
AT3G28080.4	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G02565.1	small_nucleolar_rna			None;(source:Araport11)
AT2G25880.4	protein_coding		Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division.  Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems.  In interphase cells, the protein is predominantly nuclear.  During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle.	ataurora2;(source:Araport11)
AT1G29310.2	protein_coding			SecY protein transport family protein;(source:Araport11)
AT4G17410.6	protein_coding		PQT3 is a nuclear localized E3 ligase involved in negative regulation of stress tolerance.PRMT4b is a substrate of PQT3.	DWNN domain, a CCHC-type zinc finger;(source:Araport11)
AT2G25880.3	protein_coding		Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division.  Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems.  In interphase cells, the protein is predominantly nuclear.  During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle.	ataurora2;(source:Araport11)
AT4G17410.4	protein_coding		PQT3 is a nuclear localized E3 ligase involved in negative regulation of stress tolerance.PRMT4b is a substrate of PQT3.	DWNN domain, a CCHC-type zinc finger;(source:Araport11)
AT4G17410.5	protein_coding		PQT3 is a nuclear localized E3 ligase involved in negative regulation of stress tolerance.PRMT4b is a substrate of PQT3.	DWNN domain, a CCHC-type zinc finger;(source:Araport11)
AT5G65740.5	protein_coding			zinc ion binding protein;(source:Araport11)
AT2G08340.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G29420;(source:Araport11)
AT1G57850.3	protein_coding			Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
AT3G13440.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G10710.2	protein_coding		encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC.	global transcription factor C;(source:Araport11)
AT4G10710.3	protein_coding		encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC.	global transcription factor C;(source:Araport11)
AT3G13440.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G29670.2	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.The mRNA is cell-to-cell mobile.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT4G12780.3	protein_coding		Negative regulation of growth and endocytosis, most likely as a result of inhibition of the recruitment of clathrin to endocytic pits. Overexpression inhbits recruitment of clathrin resulting in negative regulation of endocytosis and developmental arrest.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G12780.5	protein_coding		Negative regulation of growth and endocytosis, most likely as a result of inhibition of the recruitment of clathrin to endocytic pits. Overexpression inhbits recruitment of clathrin resulting in negative regulation of endocytosis and developmental arrest.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G12780.4	protein_coding		Negative regulation of growth and endocytosis, most likely as a result of inhibition of the recruitment of clathrin to endocytic pits. Overexpression inhbits recruitment of clathrin resulting in negative regulation of endocytosis and developmental arrest.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G12780.6	protein_coding		Negative regulation of growth and endocytosis, most likely as a result of inhibition of the recruitment of clathrin to endocytic pits. Overexpression inhbits recruitment of clathrin resulting in negative regulation of endocytosis and developmental arrest.	Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G47130.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G30310.4	protein_coding			FGGY family of carbohydrate kinase;(source:Araport11)
AT3G05670.2	protein_coding			RING/U-box protein;(source:Araport11)
AT5G46280.2	protein_coding			Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT5G46280.3	protein_coding			Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT5G46280.4	protein_coding			Minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT2G37640.2	protein_coding		member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio).  Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	Barwin-like endoglucanases superfamily protein;(source:Araport11)
AT4G09080.2	protein_coding		Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Knockout mutants have abnormal etioplasts.	Outer membrane OMP85 family protein;(source:Araport11)
AT3G11010.6	protein_coding			receptor like protein 34;(source:Araport11)
AT3G11010.5	protein_coding			receptor like protein 34;(source:Araport11)
AT3G11010.4	protein_coding			receptor like protein 34;(source:Araport11)
AT3G11010.3	protein_coding			receptor like protein 34;(source:Araport11)
AT5G08105.1	long_noncoding_rna			None;(source:Araport11)
AT1G54360.6	protein_coding		Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.	TBP-ASSOCIATED FACTOR 6B;(source:Araport11)
AT3G26355.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G28080.6	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G17650.2	protein_coding		Arabidopsis thaliana metal-nicotianamine transporter YSL5	YELLOW STRIPE like 5;(source:Araport11)
AT3G29644.4	antisense_long_noncoding_rna		Natural antisense transcript overlaps with AT3G29642. Has been identified as a translated small open reading frame by ribosome profiling.	Natural antisense transcript overlaps with AT3G29642;(source:Araport11)
AT1G14700.4	protein_coding			purple acid phosphatase 3;(source:Araport11)
AT5G00495.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G14700.3	protein_coding			purple acid phosphatase 3;(source:Araport11)
AT5G00495.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G08515.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G55520;(source:Araport11)
AT3G15950.4	protein_coding		Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants.  Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.	DNA topoisomerase-like protein;(source:Araport11)
AT3G15950.5	protein_coding		Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants.  Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.	DNA topoisomerase-like protein;(source:Araport11)
AT2G28250.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G09495.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G60910;(source:Araport11)
AT2G28250.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G02055.1	long_noncoding_rna			None;(source:Araport11)
AT4G02460.4	protein_coding		Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination.	DNA mismatch repair protein;(source:Araport11)
AT5G07170.2	protein_coding			Cell cycle regulated microtubule associated protein;(source:Araport11)
AT1G02952.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G02950;(source:Araport11)
AT4G34345.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05685.1	other_rna			None;(source:Araport11)
AT1G06190.4	protein_coding		Encodes a  novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.	Rho termination factor;(source:Araport11)
AT1G06190.5	protein_coding		Encodes a  novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.	Rho termination factor;(source:Araport11)
AT5G62100.5	protein_coding		A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	BCL-2-associated athanogene 2;(source:Araport11)
AT5G62100.4	protein_coding		A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	BCL-2-associated athanogene 2;(source:Araport11)
AT1G06190.3	protein_coding		Encodes a  novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.	Rho termination factor;(source:Araport11)
AT2G39445.2	protein_coding			Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit;(source:Araport11)
AT2G39445.3	protein_coding			Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit;(source:Araport11)
AT1G34580.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G09075.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G01835.1	long_noncoding_rna			None;(source:Araport11)
AT3G10180.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G08715.1	long_noncoding_rna			None;(source:Araport11)
AT1G05230.6	protein_coding		Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes.  The mutations do not affect trichome growth or branch number.	homeodomain GLABROUS 2;(source:Araport11)
AT5G59480.4	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G59480.5	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G06965.1	long_noncoding_rna			None;(source:Araport11)
AT2G30940.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G09063.1	long_noncoding_rna			None;(source:Araport11)
AT3G09060.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G03905.1	long_noncoding_rna			None;(source:Araport11)
AT5G08445.1	long_noncoding_rna			None;(source:Araport11)
AT3G22810.3	protein_coding		FORKED-LIKE family member, part of Group 1 (FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT3G22810.2	protein_coding		FORKED-LIKE family member, part of Group 1 (FKD1, FL1-FL3; Group 2 consists of FL4 and FL8 and Group 3 consists of FL5- FL7). May coordinate leaf size with vein density, where Group 1 members and Group 3 members have opposing functions.	auxin canalization protein (DUF828);(source:Araport11)
AT2G30460.3	protein_coding		UXT2 is a member of the NST-KT subfamily  of nucleotide/sugar transporters. It is localized to the golgi and functions as a UDP-Xyl transporter.	Nucleotide/sugar transporter family protein;(source:Araport11)
AT5G02765.1	long_noncoding_rna			None;(source:Araport11)
AT2G30460.6	protein_coding		UXT2 is a member of the NST-KT subfamily  of nucleotide/sugar transporters. It is localized to the golgi and functions as a UDP-Xyl transporter.	Nucleotide/sugar transporter family protein;(source:Araport11)
AT2G30460.4	protein_coding		UXT2 is a member of the NST-KT subfamily  of nucleotide/sugar transporters. It is localized to the golgi and functions as a UDP-Xyl transporter.	Nucleotide/sugar transporter family protein;(source:Araport11)
AT2G30460.5	protein_coding		UXT2 is a member of the NST-KT subfamily  of nucleotide/sugar transporters. It is localized to the golgi and functions as a UDP-Xyl transporter.	Nucleotide/sugar transporter family protein;(source:Araport11)
AT3G07045.1	long_noncoding_rna			None;(source:Araport11)
AT4G04810.2	protein_coding			methionine sulfoxide reductase B4;(source:Araport11)
AT1G05977.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G26100;(source:Araport11)
AT1G04377.1	long_noncoding_rna			None;(source:Araport11)
AT1G49720.3	protein_coding		Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses.	abscisic acid responsive element-binding factor 1;(source:Araport11)
AT3G17690.2	protein_coding		member of Cyclic nucleotide gated channel family	cyclic nucleotide gated channel 19;(source:Araport11)
AT5G04150.2	protein_coding		Encodes a member of the basic helix-loop-helix transcription factor family protein. Functions as a key regulator of iron-deficiency responses independent of the master regulator FIT. Likely regulates genes involved in the distribution of iron within the plant.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G02785.1	long_noncoding_rna			None;(source:Araport11)
AT5G00555.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G03445.1	small_nucleolar_rna			None;(source:Araport11)
AT1G09885.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G15640.2	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G49190.3	protein_coding		Encodes a sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). However, analyses of an sus2 mutant revealed a deficiency in sucrose synthase activity 12 and 15 days after flowering. There are some reports that SUS2 transcript levels are increased in leaves specifically by O(2) deficiency whereas other reports indicate that SUS2 is expressed only in seeds. Immulocalization shows that SUS2 is present in the cytosol of developing seeds, but, it also associated with plastids, though not located within them.	sucrose synthase 2;(source:Araport11)
AT1G09557.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G75450;(source:Araport11)
AT1G06133.1	long_noncoding_rna			None;(source:Araport11)
AT1G79700.4	protein_coding		WRI4 encodes an AP2/ERF-type transcriptional activator that specifically controls cuticular wax biosynthesis in Arabidopsis stems. It also functions to activate transcription of genes involved fatty acid biosynthesis during seed and flower development as well as stem wax biosynthesis. Targets identified by ChIP-seq include: LACS1, KCR1, PAS2, ECR, and WSD1.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G79700.3	protein_coding		WRI4 encodes an AP2/ERF-type transcriptional activator that specifically controls cuticular wax biosynthesis in Arabidopsis stems. It also functions to activate transcription of genes involved fatty acid biosynthesis during seed and flower development as well as stem wax biosynthesis. Targets identified by ChIP-seq include: LACS1, KCR1, PAS2, ECR, and WSD1.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G34817.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G01280.3	protein_coding		Encodes a microtubule-associated protein.	GPI-anchored protein;(source:Araport11)
AT1G07407.1	long_noncoding_rna			None;(source:Araport11)
AT3G56720.4	protein_coding			pre-mRNA-splicing factor;(source:Araport11)
AT3G56720.5	protein_coding			pre-mRNA-splicing factor;(source:Araport11)
AT3G56720.6	protein_coding			pre-mRNA-splicing factor;(source:Araport11)
AT3G56720.7	protein_coding			pre-mRNA-splicing factor;(source:Araport11)
AT2G30600.6	protein_coding			BTB/POZ domain-containing protein;(source:Araport11)
AT2G43070.3	protein_coding			SIGNAL PEPTIDE PEPTIDASE-LIKE 3;(source:Araport11)
AT5G09575.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT4G07715.1	long_noncoding_rna			None;(source:Araport11)
AT5G51040.4	protein_coding		Encodes succinate dehydrogenase assembly factor 2 (SDHAF2), a low abundance mitochondrial protein needed for assembly and activity of mitochondrial complex II and for normal root elongation.Sdhaf2 knockdown line showed lowered SDH1 protein abundance, lowered maximal SDH activity and less protein-bound FAD at the molecular mass of SDH1.	succinate dehydrogenase assembly factor;(source:Araport11)
AT5G51760.2	protein_coding		Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C).  Expressed in seeds.  AHG1 functions in seed development and germination.	Protein phosphatase 2C family protein;(source:Araport11)
AT5G01425.1	long_noncoding_rna			None;(source:Araport11)
AT3G10380.2	protein_coding		Subunit of the Putative Arabidopsis Exocyst  Complex	subunit of exocyst complex 8;(source:Araport11)
AT5G01925.1	long_noncoding_rna			None;(source:Araport11)
AT1G72560.6	protein_coding		Encodes a karyopherin, specifically the Arabidopsis ortholog of LOS1/XPOT, a protein that mediates nuclear export of tRNAs in yeast and mammals.  PSD is capable of rescuing the tRNA export defect of los1 in S. cerevisiae. psd mutants display disrupted initiation of the shoot apical meristem and delay leaf initiation after germination; they also display delayed transition from vegetative to reproductive development.	ARM repeat superfamily protein;(source:Araport11)
AT1G72560.7	protein_coding		Encodes a karyopherin, specifically the Arabidopsis ortholog of LOS1/XPOT, a protein that mediates nuclear export of tRNAs in yeast and mammals.  PSD is capable of rescuing the tRNA export defect of los1 in S. cerevisiae. psd mutants display disrupted initiation of the shoot apical meristem and delay leaf initiation after germination; they also display delayed transition from vegetative to reproductive development.	ARM repeat superfamily protein;(source:Araport11)
AT1G72560.4	protein_coding		Encodes a karyopherin, specifically the Arabidopsis ortholog of LOS1/XPOT, a protein that mediates nuclear export of tRNAs in yeast and mammals.  PSD is capable of rescuing the tRNA export defect of los1 in S. cerevisiae. psd mutants display disrupted initiation of the shoot apical meristem and delay leaf initiation after germination; they also display delayed transition from vegetative to reproductive development.	ARM repeat superfamily protein;(source:Araport11)
AT1G72560.5	protein_coding		Encodes a karyopherin, specifically the Arabidopsis ortholog of LOS1/XPOT, a protein that mediates nuclear export of tRNAs in yeast and mammals.  PSD is capable of rescuing the tRNA export defect of los1 in S. cerevisiae. psd mutants display disrupted initiation of the shoot apical meristem and delay leaf initiation after germination; they also display delayed transition from vegetative to reproductive development.	ARM repeat superfamily protein;(source:Araport11)
AT1G05760.2	protein_coding		Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance	Mannose-binding lectin superfamily protein;(source:Araport11)
AT5G45830.3	protein_coding		Encodes DOG1 (DELAY OF GERMINATION 1).  A quantitative trait locus involved in the control of seed dormancy.  Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1.  DOG1 expression is seed-specific.	delay of germination 1;(source:Araport11)
AT5G09670.uORF1	uORF			Derives_from AT5G09670;(source:Araport11)
AT1G05280.2	protein_coding			ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604);(source:Araport11)
AT2G06995.1	long_noncoding_rna			None;(source:Araport11)
AT1G21400.5	protein_coding			Thiamin diphosphate-binding fold (THDP-binding) superfamily protein;(source:Araport11)
AT2G04085.1	long_noncoding_rna			None;(source:Araport11)
AT5G04075.1	long_noncoding_rna			None;(source:Araport11)
AT5G44160.2	protein_coding		NUC is a member of the BIRD group of transcriptional regulators and is required for the formative divisions that pattern the root.  the ground tissue into cortex and endodermis.	C2H2-like zinc finger protein;(source:Araport11)
AT1G21400.4	protein_coding			Thiamin diphosphate-binding fold (THDP-binding) superfamily protein;(source:Araport11)
AT3G44753.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G71390.2	protein_coding			receptor like protein 11;(source:Araport11)
AT2G43410.6	protein_coding		FPA  is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous  pathway). Mutations in  FPA  result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.	RNA binding protein;(source:Araport11)
AT2G43700.5	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT2G43700.4	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT1G06410.3	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.	trehalose-phosphatase/synthase 7;(source:Araport11)
AT3G47660.7	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT4G17310.4	protein_coding			hypothetical protein;(source:Araport11)
AT3G21160.2	protein_coding		Encodes an alpha-mannosidase I enzyme responsible for N-glycan maturation.	alpha-mannosidase 2;(source:Araport11)
AT4G03085.5	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G52155.2	protein_coding			E3 ubiquitin ligase BIG BROTHER-like protein;(source:Araport11)
AT3G03975.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G20680;(source:Araport11)
AT1G21400.3	protein_coding			Thiamin diphosphate-binding fold (THDP-binding) superfamily protein;(source:Araport11)
AT5G20950.3	protein_coding		Encodes a beta-glucosidase involved in xyloglucan metabolism.	Glycosyl hydrolase family protein;(source:Araport11)
AT1G13490.2	protein_coding			hypothetical protein (DUF1262);(source:Araport11)
AT3G20070.3	protein_coding		Encodes a plant-specific protein of unknown function.  Mutant embryos contain at most four small cells.  The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information.	titan9;(source:Araport11)
AT1G35183.2	protein_coding			zinc finger, C3HC4 type (RING finger) protein;(source:Araport11)
AT3G20070.4	protein_coding		Encodes a plant-specific protein of unknown function.  Mutant embryos contain at most four small cells.  The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information.	titan9;(source:Araport11)
AT5G41330.2	protein_coding			BTB/POZ domain with WD40/YVTN repeat-like protein;(source:Araport11)
AT1G08530.2	protein_coding			chitinase-like protein;(source:Araport11)
AT5G63625.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06087.1	small_nucleolar_rna			None;(source:Araport11)
AT1G73970.2	protein_coding			obscurin-like protein;(source:Araport11)
AT3G06635.1	long_noncoding_rna			None;(source:Araport11)
AT2G08420.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G30950;(source:Araport11)
AT4G29760.2	protein_coding			target of trans acting-siR480/255 protein;(source:Araport11)
AT1G73970.3	protein_coding			obscurin-like protein;(source:Araport11)
AT3G56410.3	protein_coding			hypothetical protein (DUF3133);(source:Araport11)
AT5G14180.4	protein_coding			Myzus persicae-induced lipase 1;(source:Araport11)
AT4G01435.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G29280.3	pseudogene			pseudogene of tropinone reductase;(source:Araport11)
AT1G04883.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G11750;(source:Araport11)
AT3G01045.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G01620;(source:Araport11)
AT5G14220.5	protein_coding		Encodes PPO2, a putative protoporphyrinogen oxidase based on sequence homology.  Also known as MEE61 (maternal effect embryo arrest 61).  mee61 mutant shows arrested endosperm development.	Flavin containing amine oxidoreductase family;(source:Araport11)
AT3G12700.3	protein_coding		Encodes an aspartic protease has an important regulatory function in chloroplasts that not only influences photosynthetic carbon metabolism but   also plastid and nuclear gene expression.	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G37850.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G61660.5	protein_coding		Encodes a transcriptional activator that regulates the expression of genes by binding to their GCG- or E-boxes to mediate physiological responses, including proline biosynthesis and ROS scavenging pathways, to enhance stress tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G14220.3	protein_coding		Encodes PPO2, a putative protoporphyrinogen oxidase based on sequence homology.  Also known as MEE61 (maternal effect embryo arrest 61).  mee61 mutant shows arrested endosperm development.	Flavin containing amine oxidoreductase family;(source:Araport11)
AT1G61660.6	protein_coding		Encodes a transcriptional activator that regulates the expression of genes by binding to their GCG- or E-boxes to mediate physiological responses, including proline biosynthesis and ROS scavenging pathways, to enhance stress tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G18420.2	protein_coding		Involved in malate efflux response to P-deficiency in root hairs.	aluminum activated malate transporter family protein;(source:Araport11)
AT3G03745.1	antisense_rna			Natural antisense transcript overlaps with AT3G18690;(source:Araport11)
AT5G06175.1	miRNA_primary_transcript			microRNA ath-MIR5644 precursor;(source:Araport11)
AT1G68735.2	pseudogene		Encodes a defensin-like (DEFL) family protein.	pseudogene of low-molecular-weight cysteine-rich 30;(source:Araport11)
AT1G69120.2	protein_coding		Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G69120.3	protein_coding		Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G09230.2	protein_coding		Encodes a U12-type spliceosomal protein that is an indispensible component of the minor spliceosome and plays a crucial role in U12 intron splicing and plant development.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G23250.3	protein_coding			Succinyl-CoA ligase, alpha subunit;(source:Araport11)
AT4G09515.1	long_noncoding_rna			None;(source:Araport11)
AT3G02610.2	protein_coding		Encodes one of two &#8710;9 palmitoyl-ACP desaturases responsible for the biosynthesis of &#969;-7 fatty acids in the maturing endosperm.	plant stearoyl-acyl-carrier desaturase family protein;(source:Araport11)
AT2G05914.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G05915;(source:Araport11)
AT5G14180.2	protein_coding			Myzus persicae-induced lipase 1;(source:Araport11)
AT4G17310.8	protein_coding			hypothetical protein;(source:Araport11)
AT4G30993.3	protein_coding			Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT1G52370.4	protein_coding			Ribosomal protein L22p/L17e family protein;(source:Araport11)
AT1G06157.1	long_noncoding_rna			None;(source:Araport11)
AT4G03705.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G00660;(source:Araport11)
AT5G02100.3	protein_coding		Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.	Oxysterol-binding family protein;(source:Araport11)
AT5G02100.2	protein_coding		Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.	Oxysterol-binding family protein;(source:Araport11)
AT5G23120.2	protein_coding		encodes a stability and/or assembly factor of photosystem IIThe mRNA is cell-to-cell mobile.	photosystem II stability/assembly factor, chloroplast (HCF136);(source:Araport11)
AT4G20953.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G00390.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00390.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G79030.2	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G29810.2	protein_coding			Transcriptional coactivator/pterin dehydratase;(source:Araport11)
AT5G05915.1	miRNA_primary_transcript			microRNA ath-MIR3933 precursor;(source:Araport11)
AT3G60710.3	protein_coding		F-box family protein.	F-box family protein;(source:Araport11)
AT1G05733.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G22250;(source:Araport11)
AT4G06345.1	long_noncoding_rna			None;(source:Araport11)
AT1G12250.3	protein_coding			Pentapeptide repeat-containing protein;(source:Araport11)
AT2G40640.9	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G40640.8	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G71900.2	protein_coding			magnesium transporter, putative (DUF803);(source:Araport11)
AT1G11950.2	protein_coding			Transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT3G04505.1	long_noncoding_rna			None;(source:Araport11)
AT2G00370.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G40440.5	protein_coding		Encodes a mitogen-activated protein kinase kinase.  Activates MPK8 and is a target of MPKKK20. Mutant root growth is sensitive oryzalin and suggestive of a role in signaling during microtubule organization.	mitogen-activated protein kinase kinase 3;(source:Araport11)
AT2G40640.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G40640.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G40640.7	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G09985.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G39990;(source:Araport11)
AT3G00380.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G27045.4	protein_coding		Encodes ATHB54, a member of the homeodomain leucine zipper (HD-Zip) family protein. Please note that this locus was split from AT1G27050 in the TAIR10 genome release (2010). Affymetrix ATH1 Probe Set linked to symbol ATHB54 is in fact directed against the product of the AT1G27050 locus (the mRNA coding for the RNA-recognition-motif protein).	Homeobox-leucine zipper protein family;(source:Araport11)
AT1G27045.5	protein_coding		Encodes ATHB54, a member of the homeodomain leucine zipper (HD-Zip) family protein. Please note that this locus was split from AT1G27050 in the TAIR10 genome release (2010). Affymetrix ATH1 Probe Set linked to symbol ATHB54 is in fact directed against the product of the AT1G27050 locus (the mRNA coding for the RNA-recognition-motif protein).	Homeobox-leucine zipper protein family;(source:Araport11)
AT1G27045.2	protein_coding		Encodes ATHB54, a member of the homeodomain leucine zipper (HD-Zip) family protein. Please note that this locus was split from AT1G27050 in the TAIR10 genome release (2010). Affymetrix ATH1 Probe Set linked to symbol ATHB54 is in fact directed against the product of the AT1G27050 locus (the mRNA coding for the RNA-recognition-motif protein).	Homeobox-leucine zipper protein family;(source:Araport11)
AT1G27045.3	protein_coding		Encodes ATHB54, a member of the homeodomain leucine zipper (HD-Zip) family protein. Please note that this locus was split from AT1G27050 in the TAIR10 genome release (2010). Affymetrix ATH1 Probe Set linked to symbol ATHB54 is in fact directed against the product of the AT1G27050 locus (the mRNA coding for the RNA-recognition-motif protein).	Homeobox-leucine zipper protein family;(source:Araport11)
AT3G59470.3	protein_coding		Encodes one of four FRS (FAR1-RELATED SEQUENCE) factor-like genes in Arabidopsis.  FRS factors are characterized by having an N-terminal C2H2-type chelating motif of the WRKY- Glial Cell Missing1 family, a central core transposase domain of Mutator-like element transposases, and a C-terminal SWIM domain. The four FRF-like genes in  Arabidopsis share only the N-terminal motif with FRS proteins. FRF1 has been shown to bind the RB-box in vitro.  The RB-box contributes to restricting SHOOTMERISTEMLESS expression to the shoot apical meristem.	Far-red impaired responsive (FAR1) family protein;(source:Araport11)
AT4G36925.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G03725.1	long_noncoding_rna			None;(source:Araport11)
AT2G10556.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G02815.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G67540.3	protein_coding			Arabinanase/levansucrase/invertase;(source:Araport11)
AT2G39300.4	protein_coding			CAP-gly domain linker;(source:Araport11)
AT3G27260.3	protein_coding		Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain	global transcription factor group E8;(source:Araport11)
AT3G06405.1	long_noncoding_rna			None;(source:Araport11)
AT3G27260.4	protein_coding		Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain	global transcription factor group E8;(source:Araport11)
AT1G04793.1	long_noncoding_rna			None;(source:Araport11)
AT4G15420.2	protein_coding			Ubiquitin fusion degradation UFD1 family protein;(source:Araport11)
AT3G02085.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G08900;(source:Araport11)
AT4G13190.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G05815.1	miRNA_primary_transcript			microRNA ath-MIR8168 precursor;(source:Araport11)
AT4G13190.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G13190.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G44635.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G13950.4	protein_coding			nuclear factor kappa-B-binding protein;(source:Araport11)
AT2G08190.1	long_noncoding_rna			None;(source:Araport11)
AT4G38570.3	protein_coding			Putative CDP-diacylglycerol-inositol 3-phosphatidyltransferase 2;(source:Araport11)
AT5G23235.3	pseudogene			pseudogene of DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G23235.2	pseudogene			pseudogene of DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT4G24000.2	protein_coding		encodes a protein similar to cellulose synthase	cellulose synthase like G2;(source:Araport11)
AT1G76280.5	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G76280.4	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G04025.1	protein_coding			transcription repressor;(source:Araport11)
AT2G41340.3	protein_coding		NRPE5-like protein of unknown function; homologous to budding yeast RPB5	RNA polymerase II fifth largest subunit, D;(source:Araport11)
AT1G39070.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G45090.2	protein_coding			phloem protein 2-A7;(source:Araport11)
AT2G08165.1	long_noncoding_rna			None;(source:Araport11)
AT2G26540.3	protein_coding		Encodes a uroporphyrinogen-III synthase involved in tetrapyrrole biosynthesis. The protein localizes to the chloroplast.  Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype	uroporphyrinogen-III synthase family protein;(source:Araport11)
AT2G05330.2	protein_coding			BTB/POZ domain-containing protein;(source:Araport11)
AT1G09303.1	long_noncoding_rna			None;(source:Araport11)
AT3G05295.1	long_noncoding_rna			None;(source:Araport11)
AT2G36720.2	protein_coding			Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein;(source:Araport11)
AT1G80200.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G00580.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G04365.1	long_noncoding_rna			None;(source:Araport11)
AT4G04605.1	protein_coding			Myb-like DNA-binding domain protein;(source:Araport11)
AT1G08993.1	long_noncoding_rna			None;(source:Araport11)
AT2G09740.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G46610;(source:Araport11)
AT4G16162.4	protein_coding			Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G49840.2	protein_coding		Encodes an orthlog of the Xenopus inner nuclear membrane (INM) protein Nemp1/TMEM194A.	transmembrane protein (DUF2215);(source:Araport11)
AT1G01320.3	protein_coding		Encodes REDUCED CHLOROPLAST COVERAGE 1 (REC1). Located in the nucleus and cytosol. Contributes to establishing the size of the chloroplast compartment.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G37300.6	protein_coding			transmembrane protein;(source:Araport11)
AT1G09065.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G49015.3	protein_coding			Expressed protein;(source:Araport11)
AT5G05045.1	long_noncoding_rna			None;(source:Araport11)
AT5G09820.3	protein_coding		Encodes fibrillin 5 (FBN5). Located in chloroplast stroma. Essential for plastoquinone-9 biosynthesis. Stimulates enzymatic activity of solanesyl diphosphate synthases (SPS) 1 and 2 through binding to solanesyl moiety. Two splicing variants, named FBN5-A shorter one and FBN5-B longer one. FBN5-B is the protein detected in chloroplast stroma.	Plastid-lipid associated protein PAP / fibrillin family protein;(source:Araport11)
AT1G70700.3	protein_coding		JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.The mRNA is cell-to-cell mobile.	TIFY domain/Divergent CCT motif family protein;(source:Araport11)
AT3G03300.4	protein_coding		Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants.  Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.	dicer-like 2;(source:Araport11)
AT1G06837.1	long_noncoding_rna			None;(source:Araport11)
AT2G34850.4	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G70180.6	protein_coding			Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT4G09845.1	small_nucleolar_rna			None;(source:Araport11)
AT3G45740.2	protein_coding			hydrolase family protein / HAD-superfamily protein;(source:Araport11)
AT1G27900.2	protein_coding			RNA helicase family protein;(source:Araport11)
AT1G27900.3	protein_coding			RNA helicase family protein;(source:Araport11)
AT2G24680.9	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT2G24680.8	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT2G24680.7	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT2G24680.6	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT1G05413.1	long_noncoding_rna			None;(source:Araport11)
AT2G24680.4	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT2G24680.3	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT3G07615.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G46990;(source:Araport11)
AT2G36590.2	protein_coding		Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.	proline transporter 3;(source:Araport11)
AT1G09700.2	protein_coding		Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.	dsRNA-binding domain-like superfamily protein;(source:Araport11)
AT1G31835.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G55475.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G24715.1	protein_coding			high-affinity nitrate transporter-like protein;(source:Araport11)
AT5G01235.1	long_noncoding_rna			None;(source:Araport11)
AT4G14368.4	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT1G18410.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G18410.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G08805.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G33640;(source:Araport11)
AT1G18410.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G18410.5	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G23800.2	protein_coding		Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype	agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 10);(source:Araport11)
AT5G13181.2	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	hypothetical protein;(source:Araport11)
AT1G23985.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G57240.4	protein_coding			OSBP(oxysterol binding protein)-related protein 4C;(source:Araport11)
AT2G17442.6	protein_coding			hypothetical protein;(source:Araport11)
AT5G49960.2	protein_coding			ion channel protein;(source:Araport11)
AT1G08147.1	long_noncoding_rna			None;(source:Araport11)
AT3G54510.5	protein_coding			Early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT1G48580.3	protein_coding			nuclear localized protein;(source:Araport11)
AT1G48580.2	protein_coding			nuclear localized protein;(source:Araport11)
AT5G20110.2	protein_coding			Dynein light chain type 1 family protein;(source:Araport11)
AT2G46830.3	protein_coding		Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. CCA1 binds the GI promoter.	circadian clock associated 1;(source:Araport11)
AT4G05685.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G09000;(source:Araport11)
AT5G18310.3	protein_coding			ubiquitin hydrolase;(source:Araport11)
AT3G09970.2	protein_coding		Encodes a cytosolic tyrosine phosphatase.	Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT4G07575.1	long_noncoding_rna			None;(source:Araport11)
AT1G12220.3	protein_coding		Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT3G20010.2	protein_coding		Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG2 and interacts physically with SUVR2, another component of the RdDM pathway.	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT3G54510.6	protein_coding			Early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT3G55935.1	protein_coding			pre-mRNA-splicing factor;(source:Araport11)
AT3G20010.6	protein_coding		Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG2 and interacts physically with SUVR2, another component of the RdDM pathway.	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT3G20010.5	protein_coding		Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG2 and interacts physically with SUVR2, another component of the RdDM pathway.	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT3G20010.4	protein_coding		Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG2 and interacts physically with SUVR2, another component of the RdDM pathway.	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT5G51780.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G78960.2	protein_coding		Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.	lupeol synthase 2;(source:Araport11)
AT1G07857.1	long_noncoding_rna			None;(source:Araport11)
AT1G78160.2	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.	pumilio 7;(source:Araport11)
AT3G04295.1	long_noncoding_rna			None;(source:Araport11)
AT5G12340.2	protein_coding			DUF4228 domain protein;(source:Araport11)
AT5G01975.1	long_noncoding_rna			None;(source:Araport11)
AT5G09050.1	long_noncoding_rna			None;(source:Araport11)
AT2G07643.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G26700.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G26700.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G29290.4	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G05350.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G29290.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G04967.1	long_noncoding_rna			None;(source:Araport11)
AT3G26700.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G26700.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G06685.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G17280;(source:Araport11)
AT1G06720.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G28910.2	protein_coding		transcription factor myb homologue	myb domain protein 30;(source:Araport11)
AT2G45540.5	protein_coding			WD-40 repeat family protein / beige-like protein;(source:Araport11)
AT5G04635.1	long_noncoding_rna			None;(source:Araport11)
AT1G05353.1	antisense_rna			Natural antisense transcript overlaps with AT1G17870;(source:Araport11)
AT4G37630.3	protein_coding		core cell cycle genes; a quantitative trait gene for endoreduplication.	cyclin d5;(source:Araport11)
AT3G42850.2	protein_coding			Mevalonate/galactokinase family protein;(source:Araport11)
AT2G00700.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G47510.3	protein_coding		Encodes a mitochondrial-localized protein. The FUM1 gene appears to be essential, suggesting that FUM1 may play a crucial role as a fumarase in the tricarboxylic acid cycle.	fumarase 1;(source:Araport11)
AT5G14700.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G57240.3	protein_coding			OSBP(oxysterol binding protein)-related protein 4C;(source:Araport11)
AT1G07907.1	long_noncoding_rna			None;(source:Araport11)
AT4G05765.1	long_noncoding_rna			None;(source:Araport11)
AT5G25970.3	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G25970.2	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT2G26810.4	protein_coding			Putative methyltransferase family protein;(source:Araport11)
AT2G26810.5	protein_coding			Putative methyltransferase family protein;(source:Araport11)
AT2G26810.6	protein_coding			Putative methyltransferase family protein;(source:Araport11)
AT2G00760.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G01745.1	miRNA_primary_transcript			microRNA ath-MIR5998a precursor;(source:Araport11)
AT5G59460.2	protein_coding			scarecrow-like transcription factor 11 (SCL11);(source:Araport11)
AT5G19900.5	protein_coding			PRLI-interacting factor;(source:Araport11)
AT4G32420.6	protein_coding			Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT1G66810.3	protein_coding		Encodes a tandem CCCH zinc finger (TZF) protein that can bind DNA and RNA, function as a transcriptional activator, and is involved in secondary wall biosynthesis.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G66810.2	protein_coding		Encodes a tandem CCCH zinc finger (TZF) protein that can bind DNA and RNA, function as a transcriptional activator, and is involved in secondary wall biosynthesis.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT3G08355.1	long_noncoding_rna			None;(source:Araport11)
AT3G05580.2	protein_coding		Encodes a Type One Protein Phosphatase that acts as a nucleocytoplasmic negative regulator of tip growth.  Mutants affect pollen germination, pollen tube growth, and root hair growth. It acts genetically downstream of ANX1 (AT3G04690) and ANX2 (AT5G28680) and is functionally redundant with TOPP8 (AT5G27840).	Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT1G06497.1	long_noncoding_rna			None;(source:Araport11)
AT3G07605.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G46950;(source:Araport11)
AT1G05380.3	protein_coding			Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT4G39770.2	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G48100.6	protein_coding			Exonuclease family protein;(source:Araport11)
AT1G09497.1	long_noncoding_rna			None;(source:Araport11)
AT3G02705.1	long_noncoding_rna			None;(source:Araport11)
AT1G07397.1	long_noncoding_rna			None;(source:Araport11)
AT4G20720.2	protein_coding			dentin sialophosphoprotein-like protein;(source:Araport11)
AT4G33885.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G00630.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G06880.4	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G06880.5	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G16870.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G06880.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G09473.1	miRNA_primary_transcript			microRNA ath-MIR415 precursor;(source:Araport11)
AT3G02145.1	long_noncoding_rna			None;(source:Araport11)
AT3G08840.9	protein_coding			D-alanine-D-alanine ligase family;(source:Araport11)
AT3G05625.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G01100.3	protein_coding		unknown protein, has cDNAs and ESTs associated to it	hypothetical protein 1;(source:Araport11)
AT1G06487.1	long_noncoding_rna			None;(source:Araport11)
AT1G56090.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G08840.7	protein_coding			D-alanine-D-alanine ligase family;(source:Araport11)
AT2G21830.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G01725.1	long_noncoding_rna			None;(source:Araport11)
AT3G08365.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G54080;(source:Araport11)
AT4G09375.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G36730;(source:Araport11)
AT3G08840.4	protein_coding			D-alanine-D-alanine ligase family;(source:Araport11)
AT2G06265.1	protein_coding			zinc ion-binding protein;(source:Araport11)
AT2G30010.2	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 45;(source:Araport11)
AT3G08840.5	protein_coding			D-alanine-D-alanine ligase family;(source:Araport11)
AT3G09855.1	long_noncoding_rna			None;(source:Araport11)
AT3G03800.2	protein_coding		member of SYP13 Gene Family	syntaxin of plants 131;(source:Araport11)
AT1G05613.1	long_noncoding_rna			None;(source:Araport11)
AT3G50100.2	protein_coding		Encodes an exonuclease that degrades single-stranded small RNAs in vitro and limits the accumulation of small RNAs in vivo.	small RNA degrading nuclease 1;(source:Araport11)
AT4G22467.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G01375.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G03920;(source:Araport11)
AT5G52070.2	protein_coding			Agenet domain-containing protein;(source:Araport11)
AT5G52070.3	protein_coding			Agenet domain-containing protein;(source:Araport11)
AT3G06515.1	long_noncoding_rna			None;(source:Araport11)
AT5G01675.4	antisense_long_noncoding_rna		Small RNA-induced heterochromatic region at the end of FLC which produces cold-induced FLC antisense lncRNA transcripts. Represses FLOWERING LOCUS C (FLC) transcription with increased H3K27me3 and decreased H3K36me3 levels in response to cold temperatures. FCA binding of COOLAIR and SSU72 is critical for PRC2 enrichment and H3K27me3 deposition.	Natural antisense transcript overlaps with AT5G10140 (FLC);(source:Araport11)
AT5G22600.2	protein_coding			FBD / Leucine Rich Repeat domains containing protein;(source:Araport11)
AT1G04397.1	long_noncoding_rna			None;(source:Araport11)
AT5G52070.4	protein_coding			Agenet domain-containing protein;(source:Araport11)
AT1G04073.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G01860;(source:Araport11)
AT1G16720.2	protein_coding		Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA.  Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits.  The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.	high chlorophyll fluorescence phenotype 173;(source:Araport11)
AT1G16720.3	protein_coding		Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA.  Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits.  The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.	high chlorophyll fluorescence phenotype 173;(source:Araport11)
AT3G09675.1	long_noncoding_rna			None;(source:Araport11)
AT4G05880.1	long_noncoding_rna			None;(source:Araport11)
AT3G06535.1	long_noncoding_rna			None;(source:Araport11)
AT1G09487.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74550;(source:Araport11)
AT1G19860.2	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT3G44753.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G08525.1	small_nucleolar_rna			None;(source:Araport11)
AT2G18760.3	protein_coding			chromatin remodeling 8;(source:Araport11)
AT2G18760.2	protein_coding			chromatin remodeling 8;(source:Araport11)
AT3G07905.1	long_noncoding_rna			None;(source:Araport11)
AT2G18760.7	protein_coding			chromatin remodeling 8;(source:Araport11)
AT2G18760.6	protein_coding			chromatin remodeling 8;(source:Araport11)
AT2G18760.5	protein_coding			chromatin remodeling 8;(source:Araport11)
AT2G18760.4	protein_coding			chromatin remodeling 8;(source:Araport11)
AT5G02580.3	protein_coding			argininosuccinate lyase;(source:Araport11)
AT1G71200.4	protein_coding		bHLH160 transcription factor. Induced by copper deficiency and seems to mediate copper uptake along with SPL7.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G50510.2	protein_coding			LOB domain-containing protein 28;(source:Araport11)
AT1G09667.1	long_noncoding_rna			None;(source:Araport11)
AT5G21970.2	protein_coding			Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT2G06075.1	long_noncoding_rna			None;(source:Araport11)
AT2G43370.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G07650.4	protein_coding			Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT3G08700.2	protein_coding			ubiquitin-conjugating enzyme 12;(source:Araport11)
AT1G06937.1	long_noncoding_rna			None;(source:Araport11)
AT3G56408.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G56410;(source:Araport11)
AT1G07650.3	protein_coding			Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT3G00740.5	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G00740.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G32200.2	protein_coding			cysteine-rich/transmembrane domain A-like protein;(source:Araport11)
AT2G08900.1	small_nucleolar_rna			None;(source:Araport11)
AT4G06060.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G13270;(source:Araport11)
AT3G00740.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G00740.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G07100.1	miRNA_primary_transcript			microRNA ath-MIR5017 precursor;(source:Araport11)
AT1G31500.5	protein_coding		HESP identified based on similarity to nocturnins and presence circadian regulatory elements in the promoter. It functions as a Mg(II) dependent poly(A) exoribonuclease.It is under circadian regulation and expressed at night. Knockdowns affect the regulation of circadian genes CCA1 and TOC1.	DNAse I-like superfamily protein;(source:Araport11)
AT2G37195.2	protein_coding			acyl-CoA-binding domain protein;(source:Araport11)
AT1G05637.1	miRNA_primary_transcript			microRNA ath-MIR781b precursor;(source:Araport11)
AT5G01300.3	protein_coding			PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11)
AT2G37280.3	protein_coding		Encodes an ATP-binding cassette (ABC) transporter.  Expressed in the vascular tissue of primary stem.	pleiotropic drug resistance 5;(source:Araport11)
AT2G37280.2	protein_coding		Encodes an ATP-binding cassette (ABC) transporter.  Expressed in the vascular tissue of primary stem.	pleiotropic drug resistance 5;(source:Araport11)
AT5G36800.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G21950.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G21950.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G42920.2	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT4G31650.2	protein_coding			Transcriptional factor B3 family protein;(source:Araport11)
AT3G46830.2	protein_coding			RAB GTPase homolog A2C;(source:Araport11)
AT4G28680.5	protein_coding		Encodes a stress-induced tyrosine   decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine.  Recombinant TyrDC forms tetramers.	L-tyrosine decarboxylase;(source:Araport11)
AT1G07263.1	long_noncoding_rna			None;(source:Araport11)
AT1G03997.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G01050;(source:Araport11)
AT2G00880.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G25737.2	protein_coding			Sulfite exporter TauE/SafE family protein;(source:Araport11)
AT5G12440.8	protein_coding			CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT5G66310.3	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT4G07120.1	small_nuclear_rna			U1;(source:Araport11)
AT4G09940.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G31130.7	protein_coding			hypothetical protein;(source:Araport11)
AT2G31130.6	protein_coding			hypothetical protein;(source:Araport11)
AT2G45315.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G45310;(source:Araport11)
AT4G08825.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G33670;(source:Araport11)
AT2G31130.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G31130.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G08733.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G64970;(source:Araport11)
AT3G49750.2	protein_coding			receptor like protein 44;(source:Araport11)
AT4G20260.9	protein_coding		Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and  PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels.The mRNA is cell-to-cell mobile.	plasma-membrane associated cation-binding protein 1;(source:Araport11)
AT2G35520.3	protein_coding			Defender against death (DAD family) protein;(source:Araport11)
AT3G60370.2	protein_coding		Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx.  Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined.	FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT1G09417.1	long_noncoding_rna			None;(source:Araport11)
AT4G20260.8	protein_coding		Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and  PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels.The mRNA is cell-to-cell mobile.	plasma-membrane associated cation-binding protein 1;(source:Araport11)
AT5G66610.3	protein_coding			DA1-related protein 7;(source:Araport11)
AT4G38990.2	protein_coding			glycosyl hydrolase 9B16;(source:Araport11)
AT5G17580.2	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT2G37510.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G08315.1	long_noncoding_rna			None;(source:Araport11)
AT1G61370.2	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT5G09565.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G66052;(source:Araport11)
AT3G55860.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G23810.4	protein_coding		Encodes nonfunctional amino acid transporter.  AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.	amino acid permease 7;(source:Araport11)
AT5G02395.1	long_noncoding_rna			None;(source:Araport11)
AT5G09245.1	long_noncoding_rna			None;(source:Araport11)
AT5G38970.4	protein_coding		Encodes a polypeptide involved in the C-6 oxidation of brassinosteroids. Heterologous expression of the protein in yeast conferred the ability to catalyze multiple reactions in which the C-6 position of 6-deoxocastasterone, 6-deoxotyphasterol, 3-dehydro-6-deoxoteasterone and 6-deoxoteasterone are oxidized.	brassinosteroid-6-oxidase 1;(source:Araport11)
AT3G07030.4	protein_coding			Alba DNA/RNA-binding protein;(source:Araport11)
AT3G07030.5	protein_coding			Alba DNA/RNA-binding protein;(source:Araport11)
AT3G07030.2	protein_coding			Alba DNA/RNA-binding protein;(source:Araport11)
AT3G07030.3	protein_coding			Alba DNA/RNA-binding protein;(source:Araport11)
AT3G03045.1	long_noncoding_rna			None;(source:Araport11)
AT5G23890.2	protein_coding			GPI-anchored adhesin-like protein;(source:Araport11)
AT2G09565.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44860;(source:Araport11)
AT4G39710.3	protein_coding			FK506-binding protein 16-2;(source:Araport11)
AT4G28400.3	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT4G28400.2	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT2G07885.1	long_noncoding_rna			None;(source:Araport11)
AT4G18020.10	protein_coding		Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).	CheY-like two-component responsive regulator family protein;(source:Araport11)
AT4G18020.11	protein_coding		Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).	CheY-like two-component responsive regulator family protein;(source:Araport11)
AT1G06197.1	long_noncoding_rna			None;(source:Araport11)
AT2G45700.2	protein_coding			sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT5G52740.2	protein_coding			Copper transport protein family;(source:Araport11)
AT2G29670.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G02600.10	protein_coding		Encodes phosphatidic acid phosphatase. Expressed during germination.	lipid phosphate phosphatase 3;(source:Araport11)
AT3G02600.11	protein_coding		Encodes phosphatidic acid phosphatase. Expressed during germination.	lipid phosphate phosphatase 3;(source:Araport11)
AT3G02600.12	protein_coding		Encodes phosphatidic acid phosphatase. Expressed during germination.	lipid phosphate phosphatase 3;(source:Araport11)
AT1G27370.6	protein_coding		In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.  SPL10 also controls lamina shape during vegetative development.	squamosa promoter binding protein-like 10;(source:Araport11)
AT5G65685.6	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G65685.7	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G65685.4	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G65685.5	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G23980.5	protein_coding		Encodes a cyclic GMP-activated non-selective cation channel in the plasma membrane of guard cells.	cyclic nucleotide-gated channel 6;(source:Araport11)
AT5G65685.8	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G65685.9	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT1G06917.1	long_noncoding_rna			None;(source:Araport11)
AT5G45420.3	protein_coding		The gene encodes a MYB transcription factor belons to R2R3-MYB family of transcription factors. Knock-down mutant analysis indicates its role in root hair elongation.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT5G45420.2	protein_coding		The gene encodes a MYB transcription factor belons to R2R3-MYB family of transcription factors. Knock-down mutant analysis indicates its role in root hair elongation.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT2G05160.3	protein_coding			CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT2G05160.2	protein_coding			CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT5G08490.5	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G25580.2	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT5G37165.1	protein_coding			P-loop nucleoside triphosphate hydrolase superfamily protein;(source:Araport11)
AT3G43310.2	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT4G03215.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G40850.3	protein_coding		Encodes a urophorphyrin III methylase that  catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.The mRNA is cell-to-cell mobile.	urophorphyrin methylase 1;(source:Araport11)
AT3G59820.3	protein_coding			LETM1-like protein;(source:Araport11)
AT3G07105.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G45290;(source:Araport11)
AT2G46915.2	protein_coding			DUF3754 family protein, putative (DUF3754);(source:Araport11)
AT1G09865.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G59820.4	protein_coding			LETM1-like protein;(source:Araport11)
AT3G54250.2	protein_coding		Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis.	GHMP kinase family protein;(source:Araport11)
AT5G44510.4	protein_coding		Encodes TAO1 (Target of AvrB Operation), a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB.	target of AVRB operation1;(source:Araport11)
AT5G07525.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G49945;(source:Araport11)
AT4G07135.1	long_noncoding_rna			None;(source:Araport11)
AT5G44510.3	protein_coding		Encodes TAO1 (Target of AvrB Operation), a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB.	target of AVRB operation1;(source:Araport11)
AT3G60940.2	protein_coding			Putative endonuclease or glycosyl hydrolase;(source:Araport11)
AT1G20060.8	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT1G20060.9	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT3G03505.1	long_noncoding_rna			None;(source:Araport11)
AT1G05083.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G14380;(source:Araport11)
AT3G60960.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G60960.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G20060.2	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT1G17520.4	protein_coding		Single Myb Histone (SMH) gene family member. Contains terminal acidic SANT domain.	Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
AT1G17520.3	protein_coding		Single Myb Histone (SMH) gene family member. Contains terminal acidic SANT domain.	Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
AT1G17520.2	protein_coding		Single Myb Histone (SMH) gene family member. Contains terminal acidic SANT domain.	Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
AT1G20060.6	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT1G20060.7	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT3G56420.3	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT3G56420.2	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT4G04345.1	long_noncoding_rna			None;(source:Araport11)
AT2G17990.3	protein_coding		Calcium-dependent protein kinase 1 adaptor protein involved in vacuolar transport and lytic vacuole biogenesis.	polyamine-modulated factor 1-binding protein;(source:Araport11)
AT2G34660.3	protein_coding		encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump.  An ABCC-type arsenite-phytochelatin transporter. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.The mRNA is cell-to-cell mobile.	multidrug resistance-associated protein 2;(source:Araport11)
AT1G07763.1	long_noncoding_rna			None;(source:Araport11)
AT3G25013.2	protein_coding			Synaptobrevin family protein;(source:Araport11)
AT1G80900.2	protein_coding		Transmembrane magnesium transporter. One of nine family members.	magnesium transporter 1;(source:Araport11)
AT1G19290.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G25013.5	protein_coding			Synaptobrevin family protein;(source:Araport11)
AT3G25013.4	protein_coding			Synaptobrevin family protein;(source:Araport11)
AT3G15351.5	protein_coding			P53/DNA damage-regulated protein;(source:Araport11)
AT3G15351.4	protein_coding			P53/DNA damage-regulated protein;(source:Araport11)
AT3G15351.7	protein_coding			P53/DNA damage-regulated protein;(source:Araport11)
AT3G15351.6	protein_coding			P53/DNA damage-regulated protein;(source:Araport11)
AT2G19365.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT1G10760.2	protein_coding		Encodes an &#945;-glucan, water dikinase required for starch degradation. Involved  in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.	Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein;(source:Araport11)
AT1G10760.3	protein_coding		Encodes an &#945;-glucan, water dikinase required for starch degradation. Involved  in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.	Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein;(source:Araport11)
AT1G09685.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09685.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09685.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G69520.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G09240.1	long_noncoding_rna			None;(source:Araport11)
AT3G01965.1	long_noncoding_rna			None;(source:Araport11)
AT2G08495.1	long_noncoding_rna			None;(source:Araport11)
AT5G37450.4	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G45830.3	protein_coding			downstream target of AGL15 2;(source:Araport11)
AT2G45830.5	protein_coding			downstream target of AGL15 2;(source:Araport11)
AT2G45830.4	protein_coding			downstream target of AGL15 2;(source:Araport11)
AT5G37450.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G45830.6	protein_coding			downstream target of AGL15 2;(source:Araport11)
AT5G08910.1	long_noncoding_rna			None;(source:Araport11)
AT4G12670.2	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT4G08390.5	protein_coding		Encodes a chloroplastic stromal ascorbate peroxidase sAPX.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.The mRNA is cell-to-cell mobile.	stromal ascorbate peroxidase;(source:Araport11)
AT5G03100.2	protein_coding		F-box/RNI-like superfamily protein, expressed in the peroxisome.	F-box/RNI-like superfamily protein;(source:Araport11)
AT3G00990.1	novel_transcribed_region			novel transcribed region; detected in receptacle, dark-grown seedling, flower, pollen;(source:Araport11)
AT1G09845.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G16980.2	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis.  The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.	trehalose-6-phosphate synthase;(source:Araport11)
AT5G13250.2	protein_coding			RING finger protein;(source:Araport11)
AT1G05847.1	long_noncoding_rna			None;(source:Araport11)
AT1G05787.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G23110;(source:Araport11)
AT3G51860.2	protein_coding			cation exchanger 3;(source:Araport11)
AT1G77800.4	protein_coding			PHD finger family protein;(source:Araport11)
AT5G55910.2	protein_coding		Member of AGC VIIIa Kinase family. D6PK is a protein kinase involved that plays a role in polar auxin transport. Most likely acts redundantly with the related proteins: D6PKL1,D6PKL2,and D6PKL3. PIN1 is a target of D6PK phosphorylation. D6PK is associated with sterol enriched membrane rafts and may be involved in regulation of the switch from basal to planar polarity during root hair initiation. Involved in pulse-induced phototropism but also for time-dependent second positive phototropism. Works with PIN3 in the same genetic pathway of hypocotyl phototropism under all light conditions. Involved in the generation of auxin asymmetrical distribution induced by phototropic stimulation.	D6 protein kinase;(source:Araport11)
AT5G30360.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G02455.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G15800;(source:Araport11)
AT3G20390.2	protein_coding		Encodes a plastidial RidA (Reactive Intermediate Deaminase A) homolog that hydrolyzes the enamines/imines formed by Thr dehydratase from Ser or Thr. RidA accelerates the deamination of reactive enamine/imine intermediates produced by threonine dehydratase (At3g10050) with threonine or serine as substrates. In the absence of RidA, the serine-derived imine inactivates BCAT3 (At3g49680). RidA thus pre-empts damage to BCAT3 by hydrolyzing the reactive imine before it does damage.	endoribonuclease L-PSP family protein;(source:Araport11)
AT3G61850.5	protein_coding		Zinc finger transcription factor of the Dof family involved in the control of seed germination.	Dof-type zinc finger DNA-binding family protein;(source:Araport11)
AT3G43840.2	protein_coding			3-oxo-5-alpha-steroid 4-dehydrogenase family protein;(source:Araport11)
AT3G58630.2	protein_coding			sequence-specific DNA binding transcription factor;(source:Araport11)
AT1G07847.1	antisense_rna			Natural antisense transcript overlaps with AT1G52910;(source:Araport11)
AT5G14850.6	protein_coding		Encodes a putative mannosyltransferase homolog to human PIG-B and yeast GPI10, both of which are involved in the biosynthesis of glycosylphosphatidylinositol (GPI) anchors.  Disruption of the gene affects COBRA-LIKE10 localization, a GPI-anchored protein (GPI-AP) important for pollen tube growth and guidance.	Alg9-like mannosyltransferase family;(source:Araport11)
AT5G14850.4	protein_coding		Encodes a putative mannosyltransferase homolog to human PIG-B and yeast GPI10, both of which are involved in the biosynthesis of glycosylphosphatidylinositol (GPI) anchors.  Disruption of the gene affects COBRA-LIKE10 localization, a GPI-anchored protein (GPI-AP) important for pollen tube growth and guidance.	Alg9-like mannosyltransferase family;(source:Araport11)
AT5G14850.5	protein_coding		Encodes a putative mannosyltransferase homolog to human PIG-B and yeast GPI10, both of which are involved in the biosynthesis of glycosylphosphatidylinositol (GPI) anchors.  Disruption of the gene affects COBRA-LIKE10 localization, a GPI-anchored protein (GPI-AP) important for pollen tube growth and guidance.	Alg9-like mannosyltransferase family;(source:Araport11)
AT3G06655.1	long_noncoding_rna			None;(source:Araport11)
AT1G05197.1	long_noncoding_rna			None;(source:Araport11)
AT4G09555.1	long_noncoding_rna			None;(source:Araport11)
AT1G05137.1	small_nucleolar_rna			None;(source:Araport11)
AT5G02080.2	protein_coding			phosphopantothenate-cysteine ligase-like protein;(source:Araport11)
AT5G02080.3	protein_coding			phosphopantothenate-cysteine ligase-like protein;(source:Araport11)
AT5G02080.6	protein_coding			phosphopantothenate-cysteine ligase-like protein;(source:Araport11)
AT5G02080.7	protein_coding			phosphopantothenate-cysteine ligase-like protein;(source:Araport11)
AT5G02080.4	protein_coding			phosphopantothenate-cysteine ligase-like protein;(source:Araport11)
AT5G02080.5	protein_coding			phosphopantothenate-cysteine ligase-like protein;(source:Araport11)
AT1G67530.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT1G33790.6	protein_coding			jacalin lectin family protein;(source:Araport11)
AT5G09205.1	long_noncoding_rna			None;(source:Araport11)
AT1G33790.4	protein_coding			jacalin lectin family protein;(source:Araport11)
AT1G04983.1	long_noncoding_rna			None;(source:Araport11)
AT1G06187.1	long_noncoding_rna			None;(source:Araport11)
AT3G00600.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G77220.2	protein_coding		LAZ1H1 is a DUF300 that is localized to the tonoplast. Along with LAZ1 it appears to play a role in maintaining the structural integrity of vacuoles and regulating BR signaling by modulating downstream subcellular distribution of BAK1.	organic solute transporter ostalpha protein (DUF300);(source:Araport11)
AT5G20830.3	protein_coding		Encodes a protein with sucrose synthase activity (SUS1).	sucrose synthase 1;(source:Araport11)
AT1G51690.5	protein_coding		55 kDa B regulatory subunit of phosphatase 2A  mRNA,	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;(source:Araport11)
AT1G51690.4	protein_coding		55 kDa B regulatory subunit of phosphatase 2A  mRNA,	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;(source:Araport11)
AT4G28800.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G45180.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G04565.1	long_noncoding_rna			None;(source:Araport11)
AT5G44570.3	protein_coding		Encodes a PPR protein involved in mitochondrial functioning. Mutants suppress cell wall defects caused by C17 chemical inhibitor. Mutants are defective in cytochrome c maturation and activation of mitochondrial retrograde signalling.	transmembrane protein;(source:Araport11)
AT3G05870.4	protein_coding		Subunit of the anaphase promoting complex, a ubiquitin ligase complex that regulates progression through the cell cycle.	anaphase-promoting complex/cyclosome 11;(source:Araport11)
AT1G07773.1	long_noncoding_rna			None;(source:Araport11)
AT3G05870.6	protein_coding		Subunit of the anaphase promoting complex, a ubiquitin ligase complex that regulates progression through the cell cycle.	anaphase-promoting complex/cyclosome 11;(source:Araport11)
AT3G05870.7	protein_coding		Subunit of the anaphase promoting complex, a ubiquitin ligase complex that regulates progression through the cell cycle.	anaphase-promoting complex/cyclosome 11;(source:Araport11)
AT2G44450.2	protein_coding			beta glucosidase 15;(source:Araport11)
AT4G07015.1	long_noncoding_rna			None;(source:Araport11)
AT1G05797.1	long_noncoding_rna			None;(source:Araport11)
AT3G23570.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G23570.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G65090.3	protein_coding		Encodes a protein involved in root hair morphogenesis and tip growth.  Required for restricting both the size of the root-hair initiation site and the width of the root hairs during the transition to tip growth, but, apparently, is not required for normal subsequent tip growth.	DNAse I-like superfamily protein;(source:Araport11)
AT3G61440.4	protein_coding		Encodes a beta-cyanoalanine synthase. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis which is part of the cyanide detoxification pathway, and in the regulation of S-cyanylation of proteins. The mRNA is cell-to-cell mobile.	cysteine synthase C1;(source:Araport11)
AT5G05155.1	long_noncoding_rna			None;(source:Araport11)
AT2G38880.9	protein_coding		Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1.  Confers drought tolerance.	nuclear factor Y, subunit B1;(source:Araport11)
AT5G01730.3	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein 4;(source:Araport11)
AT4G11160.2	protein_coding			Translation initiation factor 2, small GTP-binding protein;(source:Araport11)
AT4G11160.3	protein_coding			Translation initiation factor 2, small GTP-binding protein;(source:Araport11)
AT5G65165.2	protein_coding		One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion.  Transcripts appear during seed maturation, persist through desiccation, are abundant in dry seeds, and markedly decline during germination.	succinate dehydrogenase 2-3;(source:Araport11)
AT4G34640.2	protein_coding		Encodes squalene synthase, which converts two molecules of farnesyl diphosphate (FPP) into squalene via an intermediate: presqualene diphosphate (PSPP). It is generally thought to be one of the key enzymes of sterol biosynthesis, since it catalyzes the first pathway-specific reaction of the sterol branch of the isoprenoid pathway.The mRNA is cell-to-cell mobile.	squalene synthase 1;(source:Araport11)
AT5G09010.1	small_nuclear_rna			U2;(source:Araport11)
AT3G61450.4	protein_coding		syntaxin of plants 73 (SYP73)	syntaxin of plants 73;(source:Araport11)
AT3G61450.5	protein_coding		syntaxin of plants 73 (SYP73)	syntaxin of plants 73;(source:Araport11)
AT3G61450.6	protein_coding		syntaxin of plants 73 (SYP73)	syntaxin of plants 73;(source:Araport11)
AT3G06795.1	long_noncoding_rna			None;(source:Araport11)
AT3G61450.3	protein_coding		syntaxin of plants 73 (SYP73)	syntaxin of plants 73;(source:Araport11)
AT1G01700.4	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 2;(source:Araport11)
AT1G01700.5	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 2;(source:Araport11)
AT1G01700.2	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 2;(source:Araport11)
AT1G01700.3	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 2;(source:Araport11)
AT1G08173.1	long_noncoding_rna			None;(source:Araport11)
AT3G62190.3	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G62190.4	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT3G53200.2	protein_coding		Member of the R2R3 factor gene family.	myb domain protein 27;(source:Araport11)
AT1G77580.3	protein_coding			filament-like protein (DUF869);(source:Araport11)
AT2G41560.2	protein_coding		Encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. Localized to the vacuole. Lesion mimic phenotype when mutation in the gene is combined with a mutation in ACA11.  Lesion mimic phenotype of double knockout can be suppressed by nutritional supplements that increase anion levels (e.g. 15 mM Nitrate, Chloride, or Phosphate).	autoinhibited Ca(2+)-ATPase, isoform 4;(source:Araport11)
AT5G11380.3	protein_coding		Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.	1-deoxy-D-xylulose 5-phosphate synthase 3;(source:Araport11)
AT1G77580.4	protein_coding			filament-like protein (DUF869);(source:Araport11)
AT2G29525.4	protein_coding		Inositol phosphorylceramide synthase	Inositol phosphorylceramide synthase 3;(source:Araport11)
AT4G31405.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G20873.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G28600.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G24240.2	protein_coding			Ribosomal protein L19 family protein;(source:Araport11)
AT1G08855.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G45130.5	protein_coding			lanosterol synthase 1;(source:Araport11)
AT1G08855.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G26300.3	protein_coding			BSD domain-containing protein;(source:Araport11)
AT3G45130.4	protein_coding			lanosterol synthase 1;(source:Araport11)
AT5G60120.5	protein_coding			target of early activation tagged (EAT) 2;(source:Araport11)
AT5G60120.4	protein_coding			target of early activation tagged (EAT) 2;(source:Araport11)
AT4G16890.3	protein_coding		Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu-  rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.	TIR-NBS-LRR class disease resistance protein;(source:Araport11)
AT1G08310.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G16890.5	protein_coding		Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu-  rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.	TIR-NBS-LRR class disease resistance protein;(source:Araport11)
AT4G16890.4	protein_coding		Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu-  rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.	TIR-NBS-LRR class disease resistance protein;(source:Araport11)
AT2G29110.2	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.8;(source:Araport11)
AT5G48370.3	protein_coding			Thioesterase/thiol ester dehydrase-isomerase superfamily protein;(source:Araport11)
AT5G64170.3	protein_coding		LNK1 is a member of a small family (4 proteins) in Arabidopsis that have some overlap in function. LNK1  functions in the integration of light signaling and circadian clock. It is regulated by  the clock TOC1 complex.Functions as a transcriptional coactivator.	dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G65170.2	protein_coding			VQ motif-containing protein;(source:Araport11)
AT3G10880.4	protein_coding			tropomyosin;(source:Araport11)
AT3G10880.3	protein_coding			tropomyosin;(source:Araport11)
AT3G10880.2	protein_coding			tropomyosin;(source:Araport11)
AT3G43930.3	protein_coding			BRCT domain-containing DNA repair protein;(source:Araport11)
AT4G13800.10	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT2G20960.4	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G20960.2	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT2G20960.3	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT5G60100.5	protein_coding		Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.	pseudo-response regulator 3;(source:Araport11)
AT1G36180.3	protein_coding		Acetyl-CoA carboxylase 2 (ACC2)The mRNA is cell-to-cell mobile.Knockout mutant is hypersensitive to a loss of chloroplast translation. Mutant seedlings are more sensitive to spectinomcyin than wild-type controls.	acetyl-CoA carboxylase 2;(source:Araport11)
AT5G06605.1	miRNA_primary_transcript			microRNA ath-MIR5628 precursor;(source:Araport11)
AT1G46768.3	protein_coding		encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.	related to AP2 1;(source:Araport11)
AT1G46768.2	protein_coding		encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.	related to AP2 1;(source:Araport11)
AT3G03120.2	protein_coding		A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins.	ADP-ribosylation factor B1C;(source:Araport11)
AT4G02915.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G09180.1	long_noncoding_rna			None;(source:Araport11)
AT3G04205.1	long_noncoding_rna			None;(source:Araport11)
AT1G23110.7	protein_coding			fold protein;(source:Araport11)
AT1G23110.6	protein_coding			fold protein;(source:Araport11)
AT4G07000.1	miRNA_primary_transcript			microRNA ath-MIR4239 precursor;(source:Araport11)
AT5G35620.3	protein_coding		Cap-binding protein, binds to the 5 Prime cap structure of nuclear-encoded mRNAs.  Mutant is resistant to potyvirus infection.	Eukaryotic initiation factor 4E protein;(source:Araport11)
AT1G55010.2	protein_coding		Predicted to encode a PR (pathogenesis-related) protein.  Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	plant defensin 1.5;(source:Araport11)
AT1G33475.2	protein_coding			SNARE-like superfamily protein;(source:Araport11)
AT4G07060.1	long_noncoding_rna			None;(source:Araport11)
AT2G00860.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G11840.2	protein_coding		member of C2-PLD subfamily	phospholipase D gamma 3;(source:Araport11)
AT2G17970.7	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G17970.6	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G17970.5	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G17970.4	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G03550.3	protein_coding			Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT1G03550.2	protein_coding			Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT5G66150.2	protein_coding			Glycosyl hydrolase family 38 protein;(source:Araport11)
AT2G22970.4	protein_coding			serine carboxypeptidase-like 11;(source:Araport11)
AT3G03625.1	miRNA_primary_transcript			microRNA ath-MIR3440b precursor;(source:Araport11)
AT1G78500.2	protein_coding		Encodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, &#945;-amyrin and bauerenol, this enzyme was also shown to produce two <i>seco</i>-triterpenes: &#945;- and &#946;-<i>seco</i>-amyrin.	Terpenoid cyclases family protein;(source:Araport11)
AT5G19855.2	protein_coding		Encodes a chloroplast stromal localized RbcX protein that acts as a chaperone in the folding of Rubisco.	Chaperonin-like RbcX protein;(source:Araport11)
AT2G17970.9	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G17970.8	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G27660.2	protein_coding		Encodes a protein with similarity to human PARK13, a mitochondrial protease implicated in Parkinson disease. DEG14  is induced by heat stress and involved in degradation of misfolded proteins.	Trypsin family protein with PDZ domain-containing protein;(source:Araport11)
AT5G01505.1	small_nucleolar_rna			None;(source:Araport11)
AT1G09913.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G79720;(source:Araport11)
AT5G51270.2	protein_coding			U-box domain-containing protein kinase family protein;(source:Araport11)
AT4G04265.1	protein_coding			PttA/En/Spm family plant transposase;(source:Araport11)
AT1G09215.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G62810.2	protein_coding			complex 1 family protein / LVR family protein;(source:Araport11)
AT5G65510.3	protein_coding		Encodes one of three PLETHORA transcription factors required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions.	AINTEGUMENTA-like 7;(source:Araport11)
AT1G54820.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G47900.3	protein_coding			filament-like protein (DUF869);(source:Araport11)
AT4G15090.3	protein_coding		Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3.	FRS (FAR1 Related Sequences) transcription factor family;(source:Araport11)
AT1G16810.3	protein_coding			7-dehydrocholesterol reductase-like protein;(source:Araport11)
AT3G08915.1	long_noncoding_rna			None;(source:Araport11)
AT1G53035.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G05247.1	small_nucleolar_rna			None;(source:Araport11)
AT3G19150.3	protein_coding		Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division.  Binds to D type cyclins. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. KRP6 appears to be targeted for degradation by RHF1a and RHF2a to allow mitotic divisions during gametogenesis. In addition, KRP6 transcript levels rise prior to and drop following the meitotic divisions of gametogenesis. Elevated levels of KRP6 negatively affect plant development and fertility.	KIP-related protein 6;(source:Araport11)
AT2G23985.21	protein_coding			hypothetical protein;(source:Araport11)
AT4G00840.2	protein_coding			DHHC-type zinc finger family protein;(source:Araport11)
AT1G09330.2	protein_coding			golgi apparatus membrane protein-like protein ECHIDNA protein;(source:Araport11)
AT1G74040.2	protein_coding		Encodes an active Arabidopsis isopropylmalate synthase IPMS2.  Involved in leucine biosynthesis.  Do not participate in the chain elongation of glucosinolates.  Expressed constitutively throughout the plant. Loss of IPMS2 can be compensated by a second isopropylmalate synthase gene IPMS1 (At1g18500).	2-isopropylmalate synthase 1;(source:Araport11)
AT5G46800.2	protein_coding		Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein	Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G01345.1	long_noncoding_rna			None;(source:Araport11)
AT4G16015.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G06523.1	miRNA_primary_transcript			microRNA ath-MIR5648 precursor;(source:Araport11)
AT3G00210.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G03965.1	antisense_rna			Natural antisense transcript overlaps with AT5G25350;(source:Araport11)
AT5G57790.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G57790.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G04537.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G07020;(source:Araport11)
AT4G06830.1	long_noncoding_rna			None;(source:Araport11)
AT2G04265.1	long_noncoding_rna			None;(source:Araport11)
AT3G50840.3	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G50840.2	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G06290.2	protein_coding		Encodes a 2-Cys peroxiredoxin (2-Cys PrxB) that contains two catalytic Cys residues.The mRNA is cell-to-cell mobile. Functions in redox cascade with TrxL2 via the ferredoxin-thioredoxin reductase (FTR)/thioredoxin (Trx) pathway to mediate the light-responsive reductive control of target proteins. Continuously transfers reducing power from TrxL2 to H2O2.	2-cysteine peroxiredoxin B;(source:Araport11)
AT2G26220.3	pseudogene			pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT2G26220.2	pseudogene			pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT1G08207.1	long_noncoding_rna			None;(source:Araport11)
AT3G54480.6	protein_coding		Encodes an SKP1 interacting partner (SKIP5).	SKP1/ASK-interacting protein 5;(source:Araport11)
AT3G54480.5	protein_coding		Encodes an SKP1 interacting partner (SKIP5).	SKP1/ASK-interacting protein 5;(source:Araport11)
AT2G26220.4	pseudogene			pseudogene of Polynucleotidyl transferase;(source:Araport11)
AT5G02480.uORF1	uORF			Derives_from AT5G02480;(source:Araport11)
AT1G08797.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G65960;(source:Araport11)
AT4G22780.2	protein_coding		Member of a family of ACT domain containing proteins . ACT domains are involved in amino acid binding .	ACT domain repeat 7;(source:Araport11)
AT1G74420.3	protein_coding		Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1.	fucosyltransferase 3;(source:Araport11)
AT3G04105.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial;(source:Araport11)
AT3G20150.2	protein_coding			Kinesin motor family protein;(source:Araport11)
AT1G74420.4	protein_coding		Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1.	fucosyltransferase 3;(source:Araport11)
AT2G08760.1	small_nucleolar_rna			None;(source:Araport11)
AT3G44769.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G37550.5	protein_coding			Acetamidase/Formamidase family protein;(source:Araport11)
AT1G70920.2	protein_coding			homeobox-leucine zipper protein 18;(source:Araport11)
AT1G12460.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G09457.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74430;(source:Araport11)
AT5G47840.2	protein_coding			adenosine monophosphate kinase;(source:Araport11)
AT1G24190.3	protein_coding		Enhances AtERF7-mediated  transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19.	SIN3-like 3;(source:Araport11)
AT1G79120.2	protein_coding			Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11)
AT5G65460.6	protein_coding		Kinesin that binds cyclin-dependent kinase CDKA;1 as homodimer or as heterodimer with KCA1	kinesin like protein for actin based chloroplast movement 2;(source:Araport11)
AT4G06745.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G17840;(source:Araport11)
AT2G08740.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G35660;(source:Araport11)
AT1G16060.3	protein_coding		Encodes ADAP, an AP2-domain protein that interacts with ARIA.  ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.	ARIA-interacting double AP2 domain protein;(source:Araport11)
AT1G16060.5	protein_coding		Encodes ADAP, an AP2-domain protein that interacts with ARIA.  ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.	ARIA-interacting double AP2 domain protein;(source:Araport11)
AT1G16060.4	protein_coding		Encodes ADAP, an AP2-domain protein that interacts with ARIA.  ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.	ARIA-interacting double AP2 domain protein;(source:Araport11)
AT1G49510.3	protein_coding		Salt stress inducible protein of unknown function.	embryo defective 1273;(source:Araport11)
AT1G49510.2	protein_coding		Salt stress inducible protein of unknown function.	embryo defective 1273;(source:Araport11)
AT1G79640.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G03375.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03375.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G79640.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G79640.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G32235.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G08975.1	long_noncoding_rna			None;(source:Araport11)
AT5G09080.1	small_nuclear_rna			U2;(source:Araport11)
AT1G29150.2	protein_coding		specifically interacts with FUS6/COP11 via the C-terminal domain of FUS6/COP11 and associates with an ATPase subunit of the 19S proteasome regulatory complex, AtS6A.The mRNA is cell-to-cell mobile.	non-ATPase subunit 9;(source:Araport11)
AT2G09185.1	long_noncoding_rna			None;(source:Araport11)
AT1G06303.1	long_noncoding_rna			None;(source:Araport11)
AT1G21200.2	protein_coding			sequence-specific DNA binding transcription factor;(source:Araport11)
AT4G36860.2	protein_coding		DAR1 is a member of a small (7 member) ubiquitin binding protein family. It appears to play a role in regulation of endoreduplication in leaf epidermal tissue.	LIM domain-containing protein;(source:Araport11)
AT4G36860.3	protein_coding		DAR1 is a member of a small (7 member) ubiquitin binding protein family. It appears to play a role in regulation of endoreduplication in leaf epidermal tissue.	LIM domain-containing protein;(source:Araport11)
AT4G04065.1	long_noncoding_rna			None;(source:Araport11)
AT2G08500.1	long_noncoding_rna			None;(source:Araport11)
AT2G06275.1	long_noncoding_rna			None;(source:Araport11)
AT1G63080.3	protein_coding		Transacting siRNA generating locus. Is targeted by TAS2-derived ta-siR2140 for cleavage.	Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G64060.uORF1	uORF			Derives_from AT5G64060;(source:Araport11)
AT3G60160.3	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 9;(source:Araport11)
AT1G08543.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G62600;(source:Araport11)
AT5G27037.2	pseudogene			pseudogene of RNA-directed DNA polymerase (reverse transcriptase)-related family protein;(source:Araport11)
AT5G01935.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G12380;(source:Araport11)
AT2G29140.2	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.The mRNA is cell-to-cell mobile.	pumilio 3;(source:Araport11)
AT5G48220.4	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT4G10950.2	protein_coding			SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT1G05387.1	long_noncoding_rna			None;(source:Araport11)
AT3G06615.1	long_noncoding_rna			None;(source:Araport11)
AT5G18640.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G18640.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G18640.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G18640.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G07530.3	protein_coding		encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat.	glycine rich protein 17;(source:Araport11)
AT2G38570.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G77490.2	protein_coding		Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	thylakoidal ascorbate peroxidase;(source:Araport11)
AT3G18780.3	protein_coding		Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs.	actin 2;(source:Araport11)
AT5G02205.1	long_noncoding_rna			None;(source:Araport11)
AT4G10970.7	protein_coding		UAP56-interacting factor1, binds single stranded RNA and, along with UIEF2,,appears to play a role in nuclear export of RNA.	ribosome maturation factor;(source:Araport11)
AT3G00720.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G06555.1	long_noncoding_rna			None;(source:Araport11)
AT1G05067.1	long_noncoding_rna			None;(source:Araport11)
AT5G04795.1	long_noncoding_rna			None;(source:Araport11)
AT5G01470.7	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G01470.4	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G01470.5	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G32660.2	protein_coding			receptor like protein 22;(source:Araport11)
AT1G38065.2	protein_coding			O-fucosyltransferase family protein;(source:Araport11)
AT3G19780.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G09420.1	long_noncoding_rna			None;(source:Araport11)
AT5G02865.1	long_noncoding_rna			None;(source:Araport11)
AT3G02665.1	long_noncoding_rna			None;(source:Araport11)
AT2G44280.4	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G55500.5	protein_coding			evolutionarily conserved C-terminal region 4;(source:Araport11)
AT1G52220.4	protein_coding			CURVATURE THYLAKOID protein;(source:Araport11)
AT4G02290.2	protein_coding			glycosyl hydrolase 9B13;(source:Araport11)
AT3G01575.1	long_noncoding_rna			None;(source:Araport11)
AT5G66600.8	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT3G05575.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G28880;(source:Araport11)
AT5G66600.6	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G66600.7	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G40400.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G16780.3	protein_coding		Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.	Inorganic H pyrophosphatase family protein;(source:Araport11)
AT2G06805.1	long_noncoding_rna			None;(source:Araport11)
AT1G05850.2	protein_coding		Encodes an endo chitinase-like protein AtCTL1.  Essential for tolerance to heat, salt and drought stresses.  Also involved in root hair development, cell expansion and response to cytokinin.  Allelic  to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.	Chitinase family protein;(source:Araport11)
AT2G09400.1	antisense_rna			Natural antisense transcript overlaps with AT2G42790;(source:Araport11)
AT2G47935.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G11410.2	protein_coding		Similar to receptor like kinase but does not appear to have kinase activity. It is involved in HopZ1a effector triggered immunity. Interacts with ZAR1 and ZED1.Localization to membrane is dependent on N-terminal myristoylation domain	Protein kinase superfamily protein;(source:Araport11)
AT3G57410.9	protein_coding		Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.	villin 3;(source:Araport11)
AT3G57410.8	protein_coding		Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.	villin 3;(source:Araport11)
AT5G38910.2	protein_coding			RmlC-like cupins superfamily protein;(source:Araport11)
AT3G57410.5	protein_coding		Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.	villin 3;(source:Araport11)
AT5G09620.2	protein_coding			Octicosapeptide/Phox/Bem1p family protein;(source:Araport11)
AT2G08445.1	long_noncoding_rna			None;(source:Araport11)
AT3G57410.6	protein_coding		Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.	villin 3;(source:Araport11)
AT2G01590.2	protein_coding		Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity.	chlororespiratory reduction 3;(source:Araport11)
AT2G23980.7	protein_coding		Encodes a cyclic GMP-activated non-selective cation channel in the plasma membrane of guard cells.	cyclic nucleotide-gated channel 6;(source:Araport11)
AT5G41910.3	protein_coding			Mediator complex, subunit Med10;(source:Araport11)
AT5G41910.2	protein_coding			Mediator complex, subunit Med10;(source:Araport11)
AT5G66620.4	protein_coding			DA1-related protein 6;(source:Araport11)
AT5G07915.1	long_noncoding_rna			None;(source:Araport11)
AT4G05840.1	long_noncoding_rna			None;(source:Araport11)
AT5G23750.3	protein_coding			Remorin family protein;(source:Araport11)
AT5G66620.2	protein_coding			DA1-related protein 6;(source:Araport11)
AT5G66620.3	protein_coding			DA1-related protein 6;(source:Araport11)
AT3G05150.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G05150.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G08139.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G09640.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G45530;(source:Araport11)
AT1G16515.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G06755.1	long_noncoding_rna			None;(source:Araport11)
AT5G38710.2	protein_coding			Methylenetetrahydrofolate reductase family protein;(source:Araport11)
AT1G14750.4	protein_coding		Encodes a meiotic cyclin-like protein, distinct from all other known Arabidopsis cyclins.  It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome.	Cyclin family protein;(source:Araport11)
AT1G79620.2	protein_coding		VRLK1 is a LRR kinase involved in switching between cell elongation and secondary cell wall thickening.VRLK1 is a member of a gene family that includes a small number of recently duplicated paralogs.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G79620.3	protein_coding		VRLK1 is a LRR kinase involved in switching between cell elongation and secondary cell wall thickening.VRLK1 is a member of a gene family that includes a small number of recently duplicated paralogs.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G79620.4	protein_coding		VRLK1 is a LRR kinase involved in switching between cell elongation and secondary cell wall thickening.VRLK1 is a member of a gene family that includes a small number of recently duplicated paralogs.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G79620.5	protein_coding		VRLK1 is a LRR kinase involved in switching between cell elongation and secondary cell wall thickening.VRLK1 is a member of a gene family that includes a small number of recently duplicated paralogs.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G05013.1	long_noncoding_rna			None;(source:Araport11)
AT1G09767.1	long_noncoding_rna			None;(source:Araport11)
AT1G16916.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G33770.3	protein_coding		Inositol pyrophosphate kinase. Catalyzes the phosphorylation of phytic acid (InsP6) to the symmetric InsP7 isomer 5-InsP7.	Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11)
AT5G08335.2	protein_coding		Encodes an  isoprenyl cysteine methylatransferase (ICMT) involved in the post-translational processing of proteins that have a C-terminal CaaX box. This protein appears to have higher catalytic activity and a higher transcript expression level than the other ICMT present in Arabidopsis (At5g23320). Analysis of ICMT RNAi lines suggests that this protein is involved in flower and stem development.	Isoprenylcysteine carboxyl methyltransferase (ICMT) family;(source:Araport11)
AT5G01940.2	protein_coding			eukaryotic translation initiation factor 2B family protein / eIF-2B family protein;(source:Araport11)
AT5G01940.3	protein_coding			eukaryotic translation initiation factor 2B family protein / eIF-2B family protein;(source:Araport11)
AT1G07690.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G07690.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G07690.4	protein_coding			transmembrane protein;(source:Araport11)
AT1G07690.5	protein_coding			transmembrane protein;(source:Araport11)
AT1G07657.1	long_noncoding_rna			None;(source:Araport11)
AT1G79915.2	protein_coding			Putative methyltransferase family protein;(source:Araport11)
AT2G05575.1	long_noncoding_rna			None;(source:Araport11)
AT3G14463.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G08620.1	long_noncoding_rna			None;(source:Araport11)
AT4G10170.uORF1	uORF			Derives_from AT4G10170;(source:Araport11)
AT1G02067.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G35935.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G26260.4	protein_coding		Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix).  Related to CIB1 (AT4G34530).  CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.	cryptochrome-interacting basic-helix-loop-helix 5;(source:Araport11)
AT5G08095.1	long_noncoding_rna			None;(source:Araport11)
AT1G69720.3	protein_coding		Encodes a member (HO3) of the heme oxygenase family.	heme oxygenase 3;(source:Araport11)
AT1G07467.1	long_noncoding_rna			None;(source:Araport11)
AT4G07745.1	long_noncoding_rna			None;(source:Araport11)
AT3G42670.3	protein_coding		Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced. Locus-specific regulator of 24nt-siRNA expression, works together with CLSY2-4 as the master regulators of essentially all Pol-IV-dependent 24nt-siRNAs.	chromatin remodeling 38;(source:Araport11)
AT3G42670.2	protein_coding		Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced. Locus-specific regulator of 24nt-siRNA expression, works together with CLSY2-4 as the master regulators of essentially all Pol-IV-dependent 24nt-siRNAs.	chromatin remodeling 38;(source:Araport11)
AT3G28030.3	protein_coding		Required for repair of pyrimidine-pyrimidinone (6-4) dimers.The mRNA is cell-to-cell mobile.	5-3 exonuclease family protein;(source:Araport11)
AT3G28030.2	protein_coding		Required for repair of pyrimidine-pyrimidinone (6-4) dimers.The mRNA is cell-to-cell mobile.	5-3 exonuclease family protein;(source:Araport11)
AT1G07567.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G49540;(source:Araport11)
AT3G44400.5	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G06465.1	long_noncoding_rna			None;(source:Araport11)
AT3G44400.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G41460.3	protein_coding		Apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.	apurinic endonuclease-redox protein;(source:Araport11)
AT1G60440.2	protein_coding		The gene AT1G60440 encodes pantothenate kinase 1. Its molecular function was shown to phosphorylate pantothenate to form 4?-phosphopantothenate.	pantothenate kinase 1;(source:Araport11)
AT4G06200.1	long_noncoding_rna			None;(source:Araport11)
AT2G18720.2	protein_coding			Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT4G05330.2	protein_coding		A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	ARF-GAP domain 13;(source:Araport11)
AT4G05330.3	protein_coding		A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	ARF-GAP domain 13;(source:Araport11)
AT2G45870.2	protein_coding		Encodes a bestrophin-like protein (Best2). Minor isoform (10% transcript of AtBest1). Putative chloride ion channel. Proposed to modulate proton motive force partitioning by mediating chloride ion influx in the thylakoid lumen.	Bestrophin-like protein;(source:Araport11)
AT4G06410.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G16670;(source:Araport11)
AT2G34830.2	protein_coding		member of WRKY Transcription Factor; Group II-e	WRKY DNA-binding protein 35;(source:Araport11)
AT3G13000.3	protein_coding			ubiquinone biosynthesis protein (Protein of unknown function, DUF547);(source:Araport11)
AT5G38360.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G00520.4	protein_coding			Acyl-CoA thioesterase family protein;(source:Araport11)
AT5G61560.4	protein_coding			U-box domain-containing protein kinase family protein;(source:Araport11)
AT5G28237.2	protein_coding			Pyridoxal-5-phosphate-dependent enzyme family protein;(source:Araport11)
AT4G26070.4	protein_coding		Member of MAP Kinase Kinase.  Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding.	MAP kinase/ ERK kinase 1;(source:Araport11)
AT4G26070.5	protein_coding		Member of MAP Kinase Kinase.  Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding.	MAP kinase/ ERK kinase 1;(source:Araport11)
AT4G38950.3	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT4G38950.4	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT4G38950.5	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT5G25450.3	protein_coding			Cytochrome bd ubiquinol oxidase, 14kDa subunit;(source:Araport11)
AT5G14000.2	protein_coding			NAC domain containing protein 84;(source:Araport11)
AT3G04645.1	long_noncoding_rna			None;(source:Araport11)
AT1G33240.2	protein_coding		Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone.  Regulates ploidy-dependent cell growth in trichome.	GT-2-like 1;(source:Araport11)
AT1G33240.3	protein_coding		Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone.  Regulates ploidy-dependent cell growth in trichome.	GT-2-like 1;(source:Araport11)
AT4G25230.3	protein_coding		RPM1 interacting protein 2, has a CUE domain which is sufficient for the interaction with RPM1.Positive regulator of RPM1 and PRS2 mediated hypersensitive response.Functions as ubiquitin ligase and binds to RPM1.	RPM1 interacting protein 2;(source:Araport11)
AT2G37300.4	protein_coding			transmembrane protein;(source:Araport11)
AT2G37300.5	protein_coding			transmembrane protein;(source:Araport11)
AT3G21310.3	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT2G37300.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G09777.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G78060;(source:Araport11)
AT5G20450.11	protein_coding			myosin;(source:Araport11)
AT5G20450.10	protein_coding			myosin;(source:Araport11)
AT5G61560.5	protein_coding			U-box domain-containing protein kinase family protein;(source:Araport11)
AT5G20450.12	protein_coding			myosin;(source:Araport11)
AT2G23980.4	protein_coding		Encodes a cyclic GMP-activated non-selective cation channel in the plasma membrane of guard cells.	cyclic nucleotide-gated channel 6;(source:Araport11)
AT4G39460.3	protein_coding		Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway.	S-adenosylmethionine carrier 1;(source:Araport11)
AT5G11430.3	protein_coding			SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT1G79180.2	protein_coding		Member of the R2R3 factor gene family.	myb domain protein 63;(source:Araport11)
AT5G11430.2	protein_coding			SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT5G06105.1	miRNA_primary_transcript			microRNA ath-MIR5659 precursor;(source:Araport11)
AT5G13410.3	protein_coding			FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT5G13410.2	protein_coding			FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G09920.3	protein_coding			FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT4G09920.2	protein_coding			FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT4G09920.5	protein_coding			FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT4G09920.4	protein_coding			FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT4G24240.2	protein_coding		Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.	WRKY DNA-binding protein 7;(source:Araport11)
AT1G08427.1	antisense_rna			Natural antisense transcript overlaps with AT1G61670;(source:Araport11)
AT3G07765.1	long_noncoding_rna			None;(source:Araport11)
AT2G11851.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G21165.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT2G21540.6	protein_coding			SEC14-like 3;(source:Araport11)
AT2G21540.5	protein_coding			SEC14-like 3;(source:Araport11)
AT2G21540.4	protein_coding			SEC14-like 3;(source:Araport11)
AT4G38060.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G23150.2	protein_coding		Involved in ethylene perception in ArabidopsisThe mRNA is cell-to-cell mobile.	Signal transduction histidine kinase, hybrid-type, ethylene sensor;(source:Araport11)
AT4G02990.2	protein_coding		Encodes BELAYA SMERT (BSM), a plastid-localized protein homologous to mitochondrial transcription termination factors (mTERF) found in animal. Mutant bsm cells are albino, are compromised in growth, and suffer defects in global plastidic gene expression.The mRNA is cell-to-cell mobile.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT3G04845.1	long_noncoding_rna			None;(source:Araport11)
AT4G27550.2	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.	trehalose-6-phosphatase synthase S4;(source:Araport11)
AT5G00770.1	long_noncoding_rna			None;(source:Araport11)
AT3G07745.1	long_noncoding_rna			None;(source:Araport11)
AT1G15030.2	protein_coding		Encodes a Cysteine-rich peptide (CRP) family protein	hypothetical protein (DUF789);(source:Araport11)
AT3G08535.1	long_noncoding_rna			None;(source:Araport11)
AT3G22380.3	protein_coding		Encodes a nucleus-acting plant-specific clock regulator working close to the central oscillator and affecting the circadian gating of light responses.  Circadian gating is the alteration of circadian phase according to the photoperiod of the entraining day/light cycle and the rhythmic antagonism of light responses in the early subjective night.  TIC differentially regulates CCA1 and PRR9 from LHY, with LHY expression as a dominant genetic target of TIC action. Also shown to be invoved in the maintenance of Arabidopsis thaliana metabolic homeostasis.	time for coffee;(source:Araport11)
AT2G08630.1	long_noncoding_rna			None;(source:Araport11)
AT5G14260.4	protein_coding			Rubisco methyltransferase family protein;(source:Araport11)
AT3G09555.1	long_noncoding_rna			None;(source:Araport11)
AT3G01415.1	protein_coding			tubulin-tyrosine ligase;(source:Araport11)
AT3G03345.1	long_noncoding_rna			None;(source:Araport11)
AT2G06175.1	long_noncoding_rna			None;(source:Araport11)
AT3G51490.3	protein_coding			tonoplast monosaccharide transporter3;(source:Araport11)
AT2G23630.2	protein_coding			SKU5 similar 16;(source:Araport11)
AT5G09055.1	long_noncoding_rna			None;(source:Araport11)
AT5G53490.4	protein_coding		thylakoid lumenal 17.4 kDa protein, chloroplast, identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}. Putative pentapeptide protein.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G10695.2	protein_coding			CDC68-like protein;(source:Araport11)
AT5G09710.2	pseudogene			Magnesium transporter CorA-like family protein;(source:Araport11)
AT5G64340.uORF1-1	uORF			Derives_from AT5G64340;(source:Araport11)
AT2G45490.2	protein_coding		Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division.  Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems.  In interphase cells, the protein is predominantly nuclear.  During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells.	ataurora3;(source:Araport11)
AT3G06180.2	protein_coding			Ribosomal protein L34e superfamily protein;(source:Araport11)
AT5G17310.4	protein_coding			UDP-glucose pyrophosphorylase 2;(source:Araport11)
AT5G17310.5	protein_coding			UDP-glucose pyrophosphorylase 2;(source:Araport11)
AT5G17310.6	protein_coding			UDP-glucose pyrophosphorylase 2;(source:Araport11)
AT3G01555.1	long_noncoding_rna			None;(source:Araport11)
AT5G02415.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G15440;(source:Araport11)
AT1G68325.1	protein_coding			glutamine-tRNA ligase/glutaminyl-tRNA protein;(source:Araport11)
AT5G24030.2	protein_coding		Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.	SLAC1 homologue 3;(source:Araport11)
AT1G05230.9	protein_coding		Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes.  The mutations do not affect trichome growth or branch number.	homeodomain GLABROUS 2;(source:Araport11)
AT1G09715.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G79890.4	protein_coding			RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G79890.3	protein_coding			RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G79890.2	protein_coding			RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G08437.1	long_noncoding_rna			None;(source:Araport11)
AT3G03815.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G19290;(source:Araport11)
AT3G07510.3	protein_coding			maternal effect embryo arrest protein;(source:Araport11)
AT5G14020.4	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT4G04680.2	protein_coding			Rix1 complex component;(source:Araport11)
AT2G07659.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G54490.2	protein_coding		Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing.The mRNA is cell-to-cell mobile.	exoribonuclease 4;(source:Araport11)
AT5G65510.4	protein_coding		Encodes one of three PLETHORA transcription factors required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions.	AINTEGUMENTA-like 7;(source:Araport11)
AT1G29600.2	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G66540.2	protein_coding			U3 small nucleolar ribonucleoprotein;(source:Araport11)
AT5G03600.2	protein_coding			SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT1G28330.6	protein_coding		dormancy-associated protein (DRM1)	dormancy-associated protein-like 1;(source:Araport11)
AT5G22785.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G09840.11	protein_coding			shaggy-like protein kinase 41;(source:Araport11)
AT2G16250.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G12590.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G07717.1	long_noncoding_rna			None;(source:Araport11)
AT3G05225.1	long_noncoding_rna			None;(source:Araport11)
AT4G06090.1	long_noncoding_rna			None;(source:Araport11)
AT5G00665.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G27555.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G63950.2	protein_coding			chromatin remodeling 24;(source:Araport11)
AT1G20780.3	protein_coding		Encodes a protein containing a U-box and an ARM domain. Homozygous mutant seedlings have a seedling lethal phenotype with widespread cell death lesions throughout the cotyledons and roots.	senescence-associated E3 ubiquitin ligase 1;(source:Araport11)
AT3G59410.4	protein_coding		Encodes an eIF2alpha kinase that can bind uncharged tRNA via its C-terminus and can phosphorylate both eIF2alpha homologues in Arabidopsis.	protein kinase family protein;(source:Araport11)
AT1G16820.4	protein_coding			vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein;(source:Araport11)
AT1G20780.2	protein_coding		Encodes a protein containing a U-box and an ARM domain. Homozygous mutant seedlings have a seedling lethal phenotype with widespread cell death lesions throughout the cotyledons and roots.	senescence-associated E3 ubiquitin ligase 1;(source:Araport11)
AT1G05973.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G26090;(source:Araport11)
AT4G08205.1	long_noncoding_rna			None;(source:Araport11)
AT2G10955.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G04715.1	long_noncoding_rna			None;(source:Araport11)
AT2G22310.3	protein_coding		Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 4;(source:Araport11)
AT2G25470.2	protein_coding			receptor like protein 21;(source:Araport11)
AT3G06925.1	long_noncoding_rna			None;(source:Araport11)
AT4G18910.2	protein_coding		Encodes an aquaporin homolog. Functions in arsenite transport and tolerance.When expressed in yeast cells can conduct hydrogen peroxide into those cells.	NOD26-like intrinsic protein 1;(source:Araport11)
AT3G05670.3	protein_coding			RING/U-box protein;(source:Araport11)
AT1G23730.2	protein_coding			beta carbonic anhydrase 3;(source:Araport11)
AT3G61830.2	protein_coding			auxin response factor 18;(source:Araport11)
AT3G04975.1	long_noncoding_rna			None;(source:Araport11)
AT1G11490.2	protein_coding			zinc finger (C2H2 type) family protein;(source:Araport11)
AT3G11560.5	protein_coding			LETM1-like protein;(source:Araport11)
AT4G24380.3	protein_coding			dihydrofolate reductase;(source:Araport11)
AT4G08265.1	long_noncoding_rna			None;(source:Araport11)
AT5G07150.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G02130.2	protein_coding		Encodes a receptor-like kinase RPK2 (also known as TOADSTOOL 2/TOAD2).  Functions as a regulator of meristem maintenance.  Mutants are insensitive to synthetic CLV3 peptide.  Mutations in the RPK2 also result in stem cell expansion and increased number of floral organs, as seen in the other clv mutants. Forms homo-oligomers.	receptor-like protein kinase 2;(source:Araport11)
AT2G25460.2	protein_coding			EEIG1/EHBP1 protein amino-terminal domain protein;(source:Araport11)
AT2G22300.3	protein_coding		Encodes a putative CAM binding transcription factor. Loss of function mutations show enhanced resistance to fungal and bacterial pathogens suggesting that CAMTA functions to suppress defense responses.It acts in the cold response pathway, it can bind to and activate the expression of DREB1 genes.	signal responsive 1;(source:Araport11)
AT3G19520.3	protein_coding			hypothetical protein (DUF626);(source:Araport11)
AT1G06037.1	long_noncoding_rna			None;(source:Araport11)
AT1G04447.1	long_noncoding_rna			None;(source:Araport11)
AT2G43410.5	protein_coding		FPA  is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous  pathway). Mutations in  FPA  result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.	RNA binding protein;(source:Araport11)
AT3G19520.4	protein_coding			hypothetical protein (DUF626);(source:Araport11)
AT3G58975.2	pseudogene		pseudogene of F-box family protein	pseudogene of F-box/RNI-like superfamily protein;(source:Araport11)
AT5G62730.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G14685.4	protein_coding		Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.	basic pentacysteine 2;(source:Araport11)
AT4G16260.2	protein_coding		Encodes a putative beta-1,3-endoglucanase that interacts with the 30C02 cyst nematode effector. May play a role in host defense.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT5G14180.5	protein_coding			Myzus persicae-induced lipase 1;(source:Araport11)
AT3G22970.uORF1	uORF			Derives_from AT3G22970;(source:Araport11)
AT3G57630.3	protein_coding		Encodes a glycoprotein glycosyl transferase ExAD. Knockout mutants show truncated root hair phenotype.	exostosin family protein;(source:Araport11)
AT1G72275.1	protein_coding			LOW protein: nuclease-like protein;(source:Araport11)
AT1G07733.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G51390;(source:Araport11)
AT5G62250.2	protein_coding			microtubule-associated protein 65-9;(source:Araport11)
AT2G43430.3	protein_coding		Encodes a predicted mitochondrial glyoxalase GLX2-1.  Studies using recombinant protein show that GLX2-1 contains a dinuclear metal binding site, but does not have glyoxalase 2 activity. Required for abiotic stress but not for normal plant growth.	glyoxalase 2-1;(source:Araport11)
AT3G04785.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G24670;(source:Araport11)
AT1G16825.2	protein_coding			Reticulon family protein;(source:Araport11)
AT1G06897.1	long_noncoding_rna			None;(source:Araport11)
AT1G55535.3	protein_coding			transmembrane protein;(source:Araport11)
AT2G34850.3	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G34850.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G22799.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G22799.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G22845.2	protein_coding			emp24/gp25L/p24 family/GOLD family protein;(source:Araport11)
AT5G66030.4	protein_coding		Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in  AtGRIP is crucial for Golgi localization.	Golgi-localized GRIP domain-containing protein;(source:Araport11)
AT1G52315.2	protein_coding			Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT3G04210.2	protein_coding		TN13 is a TIR-NBS protein involved in immune response. It co localizes with the ER and perinuclear membranes and interacts with MOS6.	Disease resistance protein (TIR-NBS class);(source:Araport11)
AT5G66030.3	protein_coding		Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in  AtGRIP is crucial for Golgi localization.	Golgi-localized GRIP domain-containing protein;(source:Araport11)
AT1G09230.3	protein_coding		Encodes a U12-type spliceosomal protein that is an indispensible component of the minor spliceosome and plays a crucial role in U12 intron splicing and plant development.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G46400.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G46400.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G47860.6	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT4G09285.1	long_noncoding_rna			None;(source:Araport11)
AT3G08755.1	long_noncoding_rna			None;(source:Araport11)
AT1G63295.2	protein_coding			Remorin family protein;(source:Araport11)
AT1G80880.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G80880.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G47455.9	protein_coding			hypothetical protein;(source:Araport11)
AT5G47455.8	protein_coding			hypothetical protein;(source:Araport11)
AT3G08905.1	long_noncoding_rna			None;(source:Araport11)
AT5G06665.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G44920;(source:Araport11)
AT1G22490.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G08205.1	antisense_rna			Natural antisense transcript overlaps with AT2G27470;(source:Araport11)
AT1G61150.9	protein_coding			LisH and RanBPM domains containing protein;(source:Araport11)
AT1G61150.8	protein_coding			LisH and RanBPM domains containing protein;(source:Araport11)
AT5G16980.3	protein_coding			Zinc-binding dehydrogenase family protein;(source:Araport11)
AT1G74205.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74210;(source:Araport11)
AT1G70175.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G03075.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G59960.4	protein_coding			histone-lysine N-methyltransferase ASHH4;(source:Araport11)
AT5G06645.1	protein_coding			gibberellin-regulated-like protein;(source:Araport11)
AT1G13570.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G13570.3	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT5G60022.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G60020;(source:Araport11)
AT3G59960.3	protein_coding			histone-lysine N-methyltransferase ASHH4;(source:Araport11)
AT1G09963.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G80410;(source:Araport11)
AT1G03120.2	protein_coding			responsive to abscisic acid 28;(source:Araport11)
AT4G06205.1	long_noncoding_rna			None;(source:Araport11)
AT2G20440.4	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT3G09430.2	protein_coding			peptide transporter family protein;(source:Araport11)
AT2G20440.3	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G03667.2	protein_coding			Asparagine synthase family protein;(source:Araport11)
AT4G26140.8	protein_coding		putative beta-galactosidase	beta-galactosidase 12;(source:Araport11)
AT3G00590.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G07645.1	long_noncoding_rna			None;(source:Araport11)
AT2G42510.6	protein_coding			survival motor neuron interacting protein;(source:Araport11)
AT2G42510.5	protein_coding			survival motor neuron interacting protein;(source:Araport11)
AT2G42510.4	protein_coding			survival motor neuron interacting protein;(source:Araport11)
AT1G04003.1	long_noncoding_rna			None;(source:Araport11)
AT5G19960.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G34210.2	protein_coding		Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development  controlling male gametophyte production.The mRNA is cell-to-cell mobile. Involved in resistance to S. sclerotiorum, fungal sRNA target.	somatic embryogenesis receptor-like kinase 2;(source:Araport11)
AT1G23750.2	protein_coding			Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G07060.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G07060.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G07060.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G26140.4	protein_coding		putative beta-galactosidase	beta-galactosidase 12;(source:Araport11)
AT5G05765.1	long_noncoding_rna			None;(source:Araport11)
AT5G43880.2	protein_coding			methyl-coenzyme M reductase II subunit gamma, putative (DUF3741);(source:Araport11)
AT5G43880.4	protein_coding			methyl-coenzyme M reductase II subunit gamma, putative (DUF3741);(source:Araport11)
AT3G00600.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09917.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G79810;(source:Araport11)
AT2G42500.4	protein_coding		Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].  ACR4 phosphorylates the PROTEIN PHOSPHATASE 2A-3 (PP2A-3) catalytic subunit of the PP2A phosphatase holoenzyme and PP2A dephosphorylates ACR4.	protein phosphatase 2A-3;(source:Araport11)
AT3G07245.1	long_noncoding_rna			None;(source:Araport11)
AT4G14710.6	protein_coding			RmlC-like cupins superfamily protein;(source:Araport11)
AT1G33415.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G33420 and AT1G33430;(source:Araport11)
AT2G40570.3	protein_coding			initiator tRNA phosphoribosyl transferase family protein;(source:Araport11)
AT1G33415.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G33420 and AT1G33430;(source:Araport11)
AT1G49480.2	protein_coding		Encodes a nuclear-localized DNA-binding protein that interacts with ITN1 at the PM and nuclei in vivo and may regulate ITN Primes subcellular localization.	related to vernalization1 1;(source:Araport11)
AT1G55310.6	protein_coding		Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SC35-like splicing factor 33;(source:Araport11)
AT1G55310.7	protein_coding		Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SC35-like splicing factor 33;(source:Araport11)
AT1G55310.4	protein_coding		Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SC35-like splicing factor 33;(source:Araport11)
AT1G55310.5	protein_coding		Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SC35-like splicing factor 33;(source:Araport11)
AT1G06727.1	long_noncoding_rna			None;(source:Araport11)
AT2G43490.8	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT5G05745.1	long_noncoding_rna			None;(source:Araport11)
AT4G36480.3	protein_coding		Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion.	long-chain base1;(source:Araport11)
AT3G00230.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G21585.6	protein_coding		Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.	endonuclease 4;(source:Araport11)
AT1G06323.1	long_noncoding_rna			None;(source:Araport11)
AT1G71280.2	protein_coding			DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT4G20340.2	protein_coding			Transcription factor TFIIE, alpha subunit;(source:Araport11)
AT4G20340.3	protein_coding			Transcription factor TFIIE, alpha subunit;(source:Araport11)
AT3G15370.2	protein_coding		member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	expansin 12;(source:Araport11)
AT4G33625.3	protein_coding			vacuole protein;(source:Araport11)
AT2G04695.1	long_noncoding_rna			None;(source:Araport11)
AT3G25880.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G04995.1	long_noncoding_rna			None;(source:Araport11)
AT1G51645.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G51640;(source:Araport11)
AT3G50810.3	protein_coding			Uncharacterized protein family (UPF0497);(source:Araport11)
AT4G21880.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G13800.2	protein_coding		Encodes a PPR (pentatricopeptide repeat motif) protein that is essential for the initiation of zygotic embryogenesis.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G05135.1	novel_transcribed_region			novel transcribed region; detected in carpel, flower, pollen;(source:Araport11)
AT2G06505.1	long_noncoding_rna			None;(source:Araport11)
AT3G05855.1	long_noncoding_rna			None;(source:Araport11)
AT5G08580.2	protein_coding			Calcium-binding EF hand family protein;(source:Araport11)
AT5G04460.6	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G16880.4	protein_coding			Target of Myb protein 1;(source:Araport11)
AT5G04460.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G80720.2	protein_coding			Mitochondrial glycoprotein family protein;(source:Araport11)
AT3G56380.2	protein_coding		response regulator 17	response regulator 17;(source:Araport11)
AT3G06095.1	long_noncoding_rna			None;(source:Araport11)
AT3G26490.4	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G10830.3	protein_coding		This locus is associated with two alternate transcripts, one of which encodes a functional 15-cis-zeta-carotene isomerase (Z-ISO) and another that encodes a variant protein with no Z-ISO activity.	15-cis-zeta-carotene isomerase;(source:Araport11)
AT3G26490.3	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G26490.2	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G51820.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G24450.2	protein_coding			Transcription factor IIIC, subunit 5;(source:Araport11)
AT1G06687.1	long_noncoding_rna			None;(source:Araport11)
AT5G56620.3	protein_coding			NAC domain containing protein 99;(source:Araport11)
AT1G01570.2	protein_coding			transferring glycosyl group transferase (DUF604);(source:Araport11)
AT4G29920.2	protein_coding		Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance. Loss of function mutants show increased sensitivity to salt stress and drought.	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G01815.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G10695;(source:Araport11)
AT2G34720.2	protein_coding			nuclear factor Y, subunit A4;(source:Araport11)
AT1G56418.2	protein_coding			keratin-associated protein;(source:Araport11)
AT5G20380.2	protein_coding		Encodes an inorganic phosphate transporter (PHT4;5).	phosphate transporter 4;(source:Araport11)
AT1G71410.2	protein_coding		One of two paralogs in Arabidopsis.SCYL2B is a membrane localized protein that interacts with components of clathrin-mediated  vesicle trafficking pathways. Loss of both SCYL2B and .SCYL2A results in severe growth defects.	ARM repeat superfamily protein;(source:Araport11)
AT4G05535.1	long_noncoding_rna			None;(source:Araport11)
AT5G35926.2	protein_coding			Protein with RNI-like/FBD-like domain;(source:Araport11)
AT4G14520.5	protein_coding			DNA-directed RNA polymerase II-like protein;(source:Araport11)
AT3G60310.2	protein_coding			acyl-CoA synthetase family protein;(source:Araport11)
AT2G37150.14	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G37150.13	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G37150.12	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G37150.11	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G37150.10	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G75700.3	protein_coding			HVA22-like protein G;(source:Araport11)
AT1G75700.2	protein_coding			HVA22-like protein G;(source:Araport11)
AT2G09685.1	small_nucleolar_rna			None;(source:Araport11)
AT4G02805.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G30823.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G23780.2	protein_coding		Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype	agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9);(source:Araport11)
AT2G09000.1	antisense_rna			Natural antisense transcript overlaps with AT2G39120;(source:Araport11)
AT1G03060.3	protein_coding		Encodes a WD/BEACH domain protein involved in cell morphogenesis and ribonucleoprotein particle formation.  It interacts with the P-body core component DCP2, associates to mRNA processing bodies (P-bodies), and regulates their assembly upon salt stress.	BEACH-DOMAIN HOMOLOG A1;(source:Araport11)
AT4G14520.8	protein_coding			DNA-directed RNA polymerase II-like protein;(source:Araport11)
AT3G03385.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G16860;(source:Araport11)
AT5G04925.1	long_noncoding_rna			None;(source:Araport11)
AT1G09575.2	protein_coding		Mitochondrial calcium channel.	calcium uniporter-like protein (DUF607);(source:Araport11)
AT1G05547.1	other_rna			None;(source:Araport11)
AT1G06200.2	protein_coding			Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT1G05317.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17745;(source:Araport11)
AT1G12615.1	protein_coding			pentatricopeptide (PPR) repeat protein;(source:Araport11)
AT5G43470.3	protein_coding		Confers resistance to Peronospora parasitica. In arabidopsis ecotype Dijon-17, HRT-mediated signaling is dependent on light for the induction of  hypersensitive response and resistance to turnip crinkle virus.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G54035.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G24870.4	protein_coding			Helicase/SANT-associated, DNA binding protein;(source:Araport11)
AT4G06990.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G21300;(source:Araport11)
AT5G17560.3	protein_coding			BolA-like family protein;(source:Araport11)
AT5G17560.2	protein_coding			BolA-like family protein;(source:Araport11)
AT3G24870.3	protein_coding			Helicase/SANT-associated, DNA binding protein;(source:Araport11)
AT4G00889.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G07075.1	small_nucleolar_rna			None;(source:Araport11)
AT5G05905.1	long_noncoding_rna			None;(source:Araport11)
AT5G11710.3	protein_coding		EPSIN1 plays an important role in the vacuolar trafficking of soluble proteins at the trans-Golgi network  via its interaction with gamma-ADR, VTI11, VSR1, and clathrin. Associated  with actin filaments and with the Golgi complex. Expressed in most tissues.The mRNA is cell-to-cell mobile.	ENTH/VHS family protein;(source:Araport11)
AT2G43490.7	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT2G01660.3	protein_coding		Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	plasmodesmata-located protein 6;(source:Araport11)
AT5G09965.1	long_noncoding_rna			None;(source:Araport11)
AT4G05155.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G05400;(source:Araport11)
AT4G08460.4	protein_coding			hypothetical protein (DUF1644);(source:Araport11)
AT2G01320.8	protein_coding			ABC-2 type transporter family protein;(source:Araport11)
AT2G01320.5	protein_coding			ABC-2 type transporter family protein;(source:Araport11)
AT3G23450.3	protein_coding			transmembrane protein;(source:Araport11)
AT2G01320.7	protein_coding			ABC-2 type transporter family protein;(source:Araport11)
AT2G01320.6	protein_coding			ABC-2 type transporter family protein;(source:Araport11)
AT3G23450.4	protein_coding			transmembrane protein;(source:Araport11)
AT5G64070.2	protein_coding		Encodes a phosphatidylinositol 4-OH kinase, PI-4Kbeta1.  Arabidopsis contains 12 PI-4Ks in three separate families: PI-4Kalphs, PI-4kbeta, and PI-4Kgamma.  PI-4Kbeta1 is 83% identical to PI-4kbeta2 encoded by At5g09350.  Interacts with the RabA4b GTPase.  Important for polarized root hair growth as the loss of this gene and its close relative PI-4kbeta2, leads to the formation of abnormal root hairs.	phosphatidylinositol 4-OH kinase beta1;(source:Araport11)
AT2G07595.1	long_noncoding_rna			None;(source:Araport11)
AT3G02825.1	long_noncoding_rna			None;(source:Araport11)
AT1G44125.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G44120;(source:Araport11)
AT1G09043.1	long_noncoding_rna			None;(source:Araport11)
AT3G04145.1	long_noncoding_rna			None;(source:Araport11)
AT2G39100.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G25820.3	protein_coding		Encodes the monoterpene 1,8-cineole synthase, atTPS-Cin. This polypeptide was also shown to synthesize other monoterpenes albeit in minor quantities. The same polypeptide is encoded at two different loci, the result of gene duplication: at3g25820 and at3g25830.	terpene synthase-like sequence-1,8-cineole;(source:Araport11)
AT1G25390.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G06785.1	long_noncoding_rna			None;(source:Araport11)
AT1G47270.3	protein_coding		Member of TLP family of tubby like proteins that also contain an F-Box. Localized to the plasma membrane.	tubby like protein 6;(source:Araport11)
AT4G28790.7	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G28790.6	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G28790.5	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G28790.4	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G28790.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G04455.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G03190;(source:Araport11)
AT3G02805.1	long_noncoding_rna			None;(source:Araport11)
AT5G63690.2	protein_coding			Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G08073.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G55860;(source:Araport11)
AT5G36220.2	protein_coding		This gene is a member of the CYP81D family of cytochrome p450s. It was originally called CYP91A1, but was later renamed to CYP81D1.	cytochrome p450 81d1;(source:Araport11)
AT4G28790.8	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G22060.2	protein_coding			sporulation-specific protein;(source:Araport11)
AT2G25690.3	protein_coding			DUF581 family protein, putative (DUF581);(source:Araport11)
AT3G25800.3	protein_coding		one of three genes encoding the protein phosphatase 2A regulatory subunit	protein phosphatase 2A subunit A2;(source:Araport11)
AT2G26780.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT4G26120.2	protein_coding			Ankyrin repeat family protein / BTB/POZ domain-containing protein;(source:Araport11)
AT3G08855.1	long_noncoding_rna			None;(source:Araport11)
AT1G27380.4	protein_coding		encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.	ROP-interactive CRIB motif-containing protein 2;(source:Araport11)
AT3G61111.2	protein_coding			Zinc-binding ribosomal protein family protein;(source:Araport11)
AT5G61280.3	protein_coding			Remorin family protein;(source:Araport11)
AT5G61280.2	protein_coding			Remorin family protein;(source:Araport11)
AT1G06127.1	long_noncoding_rna			None;(source:Araport11)
AT3G07805.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G47730;(source:Araport11)
AT1G58120.uORF1	uORF			Derives_from AT1G58120;(source:Araport11)
AT3G11440.4	protein_coding		Member of the R2R3-MYB gene family. Similar to GA-induced Barley myb gene. May be induced during germination in response to GA. Double mutants with MYB33 are male sterile, showing defects in pollen development and anther development. Contains a binding site for miRNA159 and may be spatially regulated by this micro RNA. A highly conserved RNA secondary structure abuts the miR159 binding site which facilitates its regulation by miR159. The male sterile phenotype of  the MYB33/MYB65 double mutant is light and temperature sensitive. Fertility can be restored with increased light intensity and lower temperatures.	myb domain protein 65;(source:Araport11)
AT1G04517.1	small_nucleolar_rna			None;(source:Araport11)
AT3G11440.2	protein_coding		Member of the R2R3-MYB gene family. Similar to GA-induced Barley myb gene. May be induced during germination in response to GA. Double mutants with MYB33 are male sterile, showing defects in pollen development and anther development. Contains a binding site for miRNA159 and may be spatially regulated by this micro RNA. A highly conserved RNA secondary structure abuts the miR159 binding site which facilitates its regulation by miR159. The male sterile phenotype of  the MYB33/MYB65 double mutant is light and temperature sensitive. Fertility can be restored with increased light intensity and lower temperatures.	myb domain protein 65;(source:Araport11)
AT3G11440.3	protein_coding		Member of the R2R3-MYB gene family. Similar to GA-induced Barley myb gene. May be induced during germination in response to GA. Double mutants with MYB33 are male sterile, showing defects in pollen development and anther development. Contains a binding site for miRNA159 and may be spatially regulated by this micro RNA. A highly conserved RNA secondary structure abuts the miR159 binding site which facilitates its regulation by miR159. The male sterile phenotype of  the MYB33/MYB65 double mutant is light and temperature sensitive. Fertility can be restored with increased light intensity and lower temperatures.	myb domain protein 65;(source:Araport11)
AT1G09193.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G70760;(source:Araport11)
AT3G11964.2	protein_coding		Encodes a nucleolar protein that is a ribosome biogenesis co-factor. Mutants display aberrant RNA processing and female gametophyte development.	RIBOSOMAL RNA PROCESSING 5;(source:Araport11)
AT3G25505.1	protein_coding			TIR-NBS-LRR class disease resistance protein;(source:Araport11)
AT4G24800.4	protein_coding			MA3 domain-containing protein;(source:Araport11)
AT1G05610.2	protein_coding		Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.	ADP-glucose pyrophosphorylase small subunit 2;(source:Araport11)
AT3G21305.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G44010.4	protein_coding			fanconi anemia group F protein (FANCF);(source:Araport11)
AT3G09435.1	long_noncoding_rna			None;(source:Araport11)
AT5G06230.3	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 9;(source:Araport11)
AT5G00380.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G01990.2	protein_coding			XRI1-like protein;(source:Araport11)
AT2G35585.2	protein_coding			cystic fibrosis transmembrane conductance regulator;(source:Araport11)
AT5G49305.1	protein_coding			importin subunit alpha;(source:Araport11)
AT5G07345.1	small_nuclear_rna			U1;(source:Araport11)
AT2G33820.4	protein_coding		encodes a mitochondrial ornithine transporter which exports ornithine from the mitochondrion to the cytosol	Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G26160.2	protein_coding			Metal-dependent phosphohydrolase;(source:Araport11)
AT5G62165.11	protein_coding		Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT3G25820.4	protein_coding		Encodes the monoterpene 1,8-cineole synthase, atTPS-Cin. This polypeptide was also shown to synthesize other monoterpenes albeit in minor quantities. The same polypeptide is encoded at two different loci, the result of gene duplication: at3g25820 and at3g25830.	terpene synthase-like sequence-1,8-cineole;(source:Araport11)
AT3G52600.3	protein_coding			cell wall invertase 2;(source:Araport11)
AT3G43850.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G00170.2	protein_coding			Plant VAMP (vesicle-associated membrane protein) family protein;(source:Araport11)
AT3G01495.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G04560;(source:Araport11)
AT3G27570.2	protein_coding			Sucrase/ferredoxin-like family protein;(source:Araport11)
AT4G15340.2	protein_coding		Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast.	pentacyclic triterpene synthase 1;(source:Araport11)
AT5G19990.3	protein_coding		26S proteasome AAA-ATPase subunitThe mRNA is cell-to-cell mobile.	regulatory particle triple-A ATPase 6A;(source:Araport11)
AT1G09363.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G73030;(source:Araport11)
AT5G63640.uORF2	uORF			Derives_from AT5G63640;(source:Araport11)
AT1G04380.2	protein_coding		encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G52790.4	protein_coding			CBS domain protein with a domain protein (DUF21);(source:Araport11)
AT3G14170.2	protein_coding		CORD1 is a member of a novel and plant specific family of microtubule associated proteins. CORD1 binds microtubules via a conserved protein domain shared among family members. CORD functions may overlap;cord1 / cord2 mutants have defects in secondary cell wall pit morphology.	hypothetical protein (DUF936);(source:Araport11)
AT4G16680.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G09010.2	protein_coding		Encodes a thylakoid lumen protein that was initially believed to act as a microsomal ascorbate peroxidase APX4 but to date, no evidence of enzymatic activity has been found.	ascorbate peroxidase 4;(source:Araport11)
AT1G35460.2	protein_coding		Encodes a bHLH transcription factor involved in CFL1-mediated regulation of cuticle development. Overexpression leads to abnormal cuticle development.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G23470.2	protein_coding			Cyclopropane-fatty-acyl-phospholipid synthase;(source:Araport11)
AT5G09060.1	long_noncoding_rna			None;(source:Araport11)
AT1G08913.1	long_noncoding_rna			None;(source:Araport11)
AT2G07674.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G77930.3	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G45940.2	protein_coding			hypothetical protein (DUF295);(source:Araport11)
AT4G13860.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G04730.2	protein_coding		Necessary for sister chromatid cohesion. Acts in synergy with ETG1.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G04730.3	protein_coding		Necessary for sister chromatid cohesion. Acts in synergy with ETG1.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G08000.2	protein_coding		Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.	glucan endo-1,3-beta-glucosidase-like protein 3;(source:Araport11)
AT3G49320.2	protein_coding			Metal-dependent protein hydrolase;(source:Araport11)
AT1G04730.4	protein_coding		Necessary for sister chromatid cohesion. Acts in synergy with ETG1.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G15630.2	protein_coding		Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family;(source:Araport11)
AT2G05695.1	long_noncoding_rna			None;(source:Araport11)
AT5G06205.1	long_noncoding_rna			None;(source:Araport11)
AT3G07435.1	long_noncoding_rna			None;(source:Araport11)
AT5G02230.3	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G24880.3	protein_coding		Encodes a nuclear localized protein of unknown function that interacts with components of the NuA4 histone acetyltransferase complex. I	Helicase/SANT-associated, DNA binding protein;(source:Araport11)
AT2G00730.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G37550.4	protein_coding			Acetamidase/Formamidase family protein;(source:Araport11)
AT4G37550.6	protein_coding			Acetamidase/Formamidase family protein;(source:Araport11)
AT5G22490.2	protein_coding			O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT4G17810.2	protein_coding			C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT4G13260.2	protein_coding		Encodes YUC2. Catalyzes conversion of IPA (indole-3-pyruvic acid) to IAA (indole-3-acetic acid) in auxin biosynthesis pathway.	Flavin-binding monooxygenase family protein;(source:Araport11)
AT3G08660.3	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT2G47000.3	protein_coding		Encodes an auxin efflux transmembrane transporter that is a member of the multidrug resistance  P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal  redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above and is involved in root hair elongation.	ATP binding cassette subfamily B4;(source:Araport11)
AT3G06625.1	long_noncoding_rna			None;(source:Araport11)
AT3G17500.2	protein_coding			F-box family protein;(source:Araport11)
AT5G09615.1	long_noncoding_rna			None;(source:Araport11)
AT5G50915.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G04495.1	long_noncoding_rna			None;(source:Araport11)
AT5G07855.1	long_noncoding_rna			None;(source:Araport11)
AT4G21370.2	pseudogene		The Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1.	pseudogene of receptor kinase 3;(source:Araport11)
AT4G21370.3	pseudogene		The Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1.	pseudogene of receptor kinase 3;(source:Araport11)
AT1G67420.5	protein_coding			Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT1G67420.4	protein_coding			Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT5G53220.6	protein_coding			hypothetical protein;(source:Araport11)
AT1G67420.6	protein_coding			Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT1G27720.6	protein_coding			TBP-associated factor 4B;(source:Araport11)
AT1G27720.7	protein_coding			TBP-associated factor 4B;(source:Araport11)
AT1G67420.3	protein_coding			Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT1G27720.5	protein_coding			TBP-associated factor 4B;(source:Araport11)
AT3G59120.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G27720.8	protein_coding			TBP-associated factor 4B;(source:Araport11)
AT1G27720.9	protein_coding			TBP-associated factor 4B;(source:Araport11)
AT1G36325.1	protein_coding			GCK domain protein;(source:Araport11)
AT4G07765.1	long_noncoding_rna			None;(source:Araport11)
AT1G06997.1	long_noncoding_rna			None;(source:Araport11)
AT1G09373.1	long_noncoding_rna			None;(source:Araport11)
AT5G00750.1	small_nucleolar_rna			None;(source:Araport11)
AT2G02410.8	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT2G02410.9	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT1G10170.3	protein_coding		Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1.  Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.	NF-X-like 1;(source:Araport11)
AT4G19670.7	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G14675.1	protein_coding			chaperone ClpB1-like protein;(source:Araport11)
AT2G08635.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33845;(source:Araport11)
AT2G02410.6	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT3G45180.2	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT2G02410.4	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT2G02410.5	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT5G52545.2	protein_coding			RNA-binding protein-like RNA recognition motif protein;(source:Araport11)
AT2G31265.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G08045.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G49180;(source:Araport11)
AT1G07460.2	protein_coding			Concanavalin A-like lectin family protein;(source:Araport11)
AT5G41670.3	protein_coding			6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT5G41670.4	protein_coding			6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT1G05727.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G22180;(source:Araport11)
AT2G16970.8	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT4G19275.1	protein_coding			galactose oxidase/kelch repeat protein;(source:Araport11)
AT4G24880.2	protein_coding			snurportin-1 protein;(source:Araport11)
AT4G01883.2	protein_coding			Polyketide cyclase / dehydrase and lipid transport protein;(source:Araport11)
AT2G29790.2	protein_coding		Encodes a Maternally expressed gene (MEG) family protein [pseudogene]	maternally expressed family protein;(source:Araport11)
AT2G29790.3	protein_coding		Encodes a Maternally expressed gene (MEG) family protein [pseudogene]	maternally expressed family protein;(source:Araport11)
AT4G07230.1	long_noncoding_rna			None;(source:Araport11)
AT4G38600.3	protein_coding		encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.	HECT ubiquitin protein ligase family protein KAK;(source:Araport11)
AT4G17000.3	protein_coding			neurofilament heavy protein;(source:Araport11)
AT4G17000.2	protein_coding			neurofilament heavy protein;(source:Araport11)
AT1G07967.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G54370;(source:Araport11)
AT5G28030.3	protein_coding		Encodes a novel l-cysteine desulfhydrase involved in cysteine homeostasis that catalyzes the desulfuration of Cys, instead of the synthesis of Cys like the OASTL, to produce sulfide plus ammonia and pyruvate.	L-cysteine desulfhydrase 1;(source:Araport11)
AT3G51360.10	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G09125.1	long_noncoding_rna			None;(source:Araport11)
AT1G05553.1	long_noncoding_rna			None;(source:Araport11)
AT1G80380.7	protein_coding		encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G23990.3	protein_coding		Encodes a ferric chelate reductase that is expressed at low levels in roots,shoots and flowers, but not cotyledons.	ferric reduction oxidase 5;(source:Araport11)
AT1G06060.2	protein_coding			LisH and RanBPM domains containing protein;(source:Araport11)
AT5G25530.2	protein_coding			DNAJ heat shock family protein;(source:Araport11)
AT5G01385.1	long_noncoding_rna			None;(source:Araport11)
AT4G33940.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G47950.2	protein_coding		mutant has Slight reduction in root and shoot growth; Exaggerated defects in salt stress; Plasma Membrane H+ ATPase	H[+]-ATPase 4;(source:Araport11)
AT2G03590.2	protein_coding		Encodes a member of a class of allantoin transporters.	ureide permease 1;(source:Araport11)
AT1G48510.3	protein_coding			Surfeit locus 1 cytochrome c oxidase biogenesis protein;(source:Araport11)
AT4G28390.2	protein_coding		Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli).	ADP/ATP carrier 3;(source:Araport11)
AT2G07535.1	long_noncoding_rna			None;(source:Araport11)
AT4G20555.1	protein_coding			receptor-like kinase;(source:Araport11)
AT4G33050.5	protein_coding		Encodes a calmodulin-binding protein involved in stomatal movement.	calmodulin-binding family protein;(source:Araport11)
AT2G20120.2	protein_coding		Encodes an integral membrane protein of unknown function, highly conserved between plants and bacteria; is likely to be involved in a mechanism that negatively regulates the differentiation of vascular tissue in the stem.  Mutants display a dramatic increase in vascular tissue development in the stem in place of the interfascicular region that normally separates the vascular bundles.	CONTINUOUS VASCULAR RING protein (DUF502);(source:Araport11)
AT3G46385.2	pseudogene			pseudogene of Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G46385.3	pseudogene			pseudogene of Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G24330.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT5G23430.3	protein_coding		One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G09375.1	long_noncoding_rna			None;(source:Araport11)
AT5G04345.1	long_noncoding_rna			None;(source:Araport11)
AT3G05285.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G27750;(source:Araport11)
AT1G06823.1	long_noncoding_rna			None;(source:Araport11)
AT1G04287.1	long_noncoding_rna			None;(source:Araport11)
AT4G05195.1	novel_transcribed_region			novel transcribed region; detected in carpel, root apical meristem, receptacle, leaf, dark-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT5G00825.1	long_noncoding_rna			None;(source:Araport11)
AT1G18440.2	protein_coding			Peptidyl-tRNA hydrolase family protein;(source:Araport11)
AT2G29280.4	pseudogene			pseudogene of tropinone reductase;(source:Araport11)
AT2G16970.6	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G03610.2	protein_coding			plant/protein (DUF789);(source:Araport11)
AT5G06145.1	long_noncoding_rna			None;(source:Araport11)
AT3G02585.1	antisense_rna			Natural antisense transcript overlaps with AT3G12740;(source:Araport11)
AT2G14695.1	protein_coding			UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter;(source:Araport11)
AT2G46440.2	protein_coding		Member of Cyclic nucleotide gated channel family. Positive regulator of resistance against avirulent fungal pathogen.The mRNA is cell-to-cell mobile.	cyclic nucleotide-gated channels;(source:Araport11)
AT1G05737.1	long_noncoding_rna			None;(source:Araport11)
AT2G29320.3	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G29320.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G10600.2	protein_coding		Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.	cationic amino acid transporter 7;(source:Araport11)
AT4G15450.2	protein_coding			Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT5G00805.1	long_noncoding_rna			None;(source:Araport11)
AT4G05180.2	protein_coding		Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.	photosystem II subunit Q-2;(source:Araport11)
AT2G25000.4	protein_coding		Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both  P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	WRKY DNA-binding protein 60;(source:Araport11)
AT5G15940.4	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G25000.2	protein_coding		Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both  P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	WRKY DNA-binding protein 60;(source:Araport11)
AT2G25000.3	protein_coding		Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both  P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	WRKY DNA-binding protein 60;(source:Araport11)
AT3G07330.2	protein_coding		encodes a gene similar to cellulose synthase	Cellulose-synthase-like C6;(source:Araport11)
AT3G07360.6	protein_coding		The AT3G07360.1 gene model encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. The proteins predicted to be encoded by the AT3G07360.2 and AT3G07360.3 gene models lack the U-box domain.  Together with AtARK2, it is required for auxin-mediated lateral root development under phosphate-starved conditions.PUB9 forms punctate structures and co-localizes with the autophagosomal marker ATG8 in the presence of ARK2. Plants lacking both AtPUB9 and ARK2 are defective in LR formation under phosphate starvation.Phosphate starvation leads to PUB9 localization on punctate sub-cellular structures in planta.	plant U-box 9;(source:Araport11)
AT1G74200.2	protein_coding			receptor like protein 16;(source:Araport11)
AT1G05713.1	long_noncoding_rna			None;(source:Araport11)
AT1G21470.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G07360.7	protein_coding		The AT3G07360.1 gene model encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. The proteins predicted to be encoded by the AT3G07360.2 and AT3G07360.3 gene models lack the U-box domain.  Together with AtARK2, it is required for auxin-mediated lateral root development under phosphate-starved conditions.PUB9 forms punctate structures and co-localizes with the autophagosomal marker ATG8 in the presence of ARK2. Plants lacking both AtPUB9 and ARK2 are defective in LR formation under phosphate starvation.Phosphate starvation leads to PUB9 localization on punctate sub-cellular structures in planta.	plant U-box 9;(source:Araport11)
AT4G08365.1	long_noncoding_rna			None;(source:Araport11)
AT5G47730.4	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT3G01780.2	protein_coding		Encodes TPLATE, a cytokinesis protein targeted to the cell plate.  Functions in vesicle-trafficking events required for site-specific cell wall modifications during pollen germination and for anchoring of the cell plate to the mother wall at the correct cortical position.	ARM repeat superfamily protein;(source:Araport11)
AT2G08505.1	long_noncoding_rna			None;(source:Araport11)
AT1G15175.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G15170;(source:Araport11)
AT5G08920.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G59450;(source:Araport11)
AT3G49720.3	protein_coding		Encodes CGR2 (cotton Golgi-related 2). CGR2 and a close homologue CGR3 have overlapping roles in plant growth and pectin methylesterification in the Golgi apparatus.	transmembrane protein;(source:Araport11)
AT4G07055.1	long_noncoding_rna			None;(source:Araport11)
AT5G02355.1	long_noncoding_rna			None;(source:Araport11)
AT1G11570.3	protein_coding			NTF2-like protein;(source:Araport11)
AT4G36795.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G27720.4	protein_coding			60S acidic ribosomal protein family;(source:Araport11)
AT5G37180.3	protein_coding		Encodes a protein with sucrose synthase activity (SUS5).	sucrose synthase 5;(source:Araport11)
AT5G37180.2	protein_coding		Encodes a protein with sucrose synthase activity (SUS5).	sucrose synthase 5;(source:Araport11)
AT5G17440.2	protein_coding			LUC7 related protein;(source:Araport11)
AT4G18540.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G03230.3	protein_coding			G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT4G03230.2	protein_coding			G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT1G56120.2	protein_coding			Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT1G56120.3	protein_coding			Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT4G03230.7	protein_coding			G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT4G03230.6	protein_coding			G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT4G03230.5	protein_coding			G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT4G03230.4	protein_coding			G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT5G67460.2	protein_coding			O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT1G05670.3	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT2G18860.3	protein_coding			Syntaxin/t-SNARE family protein;(source:Araport11)
AT3G02095.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G09085;(source:Araport11)
AT2G16953.1	protein_coding			transportin;(source:Araport11)
AT4G06235.1	long_noncoding_rna			None;(source:Araport11)
AT4G19850.3	protein_coding		encodes a protein similar to phloem protein 2 in cucumber. a member of a large gene family.	lectin-like protein;(source:Araport11)
AT3G20010.3	protein_coding		Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG2 and interacts physically with SUVR2, another component of the RdDM pathway.	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT4G25400.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G04297.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G04900;(source:Araport11)
AT3G18610.2	protein_coding		Encodes ATNUC-L2 (NUCLEOLIN LIKE 2).	nucleolin like 2;(source:Araport11)
AT5G09000.1	small_nucleolar_rna			None;(source:Araport11)
AT3G57550.3	protein_coding		guanylate kinase	guanylate kinase;(source:Araport11)
AT2G31400.2	protein_coding		Encodes a a chloroplast-localized pentatricopeptide-repeat protein involved in regulation of nuclear gene expression.	s uncoupled 1;(source:Araport11)
AT2G23093.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G59290.4	protein_coding		Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate  several cell wall biosynthetic enzymes.	UDP-glucuronic acid decarboxylase 3;(source:Araport11)
AT4G02075.3	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT4G02075.2	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G10620.2	protein_coding			methyltransferase;(source:Araport11)
AT5G01095.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G05750;(source:Araport11)
AT1G80090.2	protein_coding			Cystathionine beta-synthase (CBS) family protein;(source:Araport11)
AT2G07945.1	long_noncoding_rna			None;(source:Araport11)
AT1G17560.2	protein_coding		Encodes HUELLENLOS (HLL), a mitochondrial ribosome protein, similar to L14 ribosomal protein of eubacteria. HLL is essential for normal ovule development.	Ribosomal protein L14p/L23e family protein;(source:Araport11)
AT1G41880.2	protein_coding			Ribosomal protein L35Ae family protein;(source:Araport11)
AT5G06150.2	protein_coding		Encodes a cyclin whose expression is reduced in response to high salt.	Cyclin family protein;(source:Araport11)
AT1G09823.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G78570;(source:Araport11)
AT5G62130.4	protein_coding			Per1-like family protein;(source:Araport11)
AT1G07413.1	long_noncoding_rna			None;(source:Araport11)
AT4G04615.1	small_nuclear_rna			U6;(source:Araport11)
AT1G73750.2	protein_coding			alpha/beta hydrolase family protein;(source:Araport11)
AT5G18860.2	protein_coding		Encodes a purine nucleoside hydrolase active in the apoplast. It might play a role in salvaging extracellular ATP. NSH3 transcript levels rise in response to jasmonic acid and wounding.	inosine-uridine preferring nucleoside hydrolase family protein;(source:Araport11)
AT5G02935.1	long_noncoding_rna			None;(source:Araport11)
AT5G62130.3	protein_coding			Per1-like family protein;(source:Araport11)
AT5G53140.2	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G05543.1	long_noncoding_rna			None;(source:Araport11)
AT5G63680.3	protein_coding			Pyruvate kinase family protein;(source:Araport11)
AT5G63680.2	protein_coding			Pyruvate kinase family protein;(source:Araport11)
AT5G24200.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G06345.1	long_noncoding_rna			None;(source:Araport11)
AT2G34020.2	protein_coding			Calcium-binding EF-hand family protein;(source:Araport11)
AT3G15790.2	protein_coding		Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain 11;(source:Araport11)
AT3G15790.3	protein_coding		Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain 11;(source:Araport11)
AT1G09833.1	long_noncoding_rna			None;(source:Araport11)
AT5G09195.1	long_noncoding_rna			None;(source:Araport11)
AT2G33170.2	protein_coding			Leucine-rich repeat receptor-like protein kinase family protein;(source:Araport11)
AT1G09455.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G52370.2	protein_coding		Fasciclin-like arabinogalactan protein. Possibly involved in embryogenesis and seed development.	FASCICLIN-like arabinogalactan protein 15 precursor;(source:Araport11)
AT2G09645.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G45540;(source:Araport11)
AT5G04625.1	long_noncoding_rna			None;(source:Araport11)
AT1G34630.5	protein_coding			transmembrane protein;(source:Araport11)
AT5G05885.1	long_noncoding_rna			None;(source:Araport11)
AT3G04685.1	antisense_rna			Natural antisense transcript overlaps with AT3G24500;(source:Araport11)
AT1G58235.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G34630.3	protein_coding			transmembrane protein;(source:Araport11)
AT3G09800.5	protein_coding			SNARE-like superfamily protein;(source:Araport11)
AT3G09800.4	protein_coding			SNARE-like superfamily protein;(source:Araport11)
AT3G24360.3	protein_coding			ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT3G09800.6	protein_coding			SNARE-like superfamily protein;(source:Araport11)
AT2G06655.1	long_noncoding_rna			None;(source:Araport11)
AT4G36120.2	protein_coding			filament-like protein (DUF869);(source:Araport11)
AT3G09800.3	protein_coding			SNARE-like superfamily protein;(source:Araport11)
AT3G09800.2	protein_coding			SNARE-like superfamily protein;(source:Araport11)
AT3G04425.1	long_noncoding_rna			None;(source:Araport11)
AT2G24650.7	protein_coding			B3 domain-containing protein REM13;(source:Araport11)
AT3G09825.1	long_noncoding_rna			None;(source:Araport11)
AT4G35890.2	protein_coding		Encodes a cytoplasmic LAM domain containing protein that is involved in leaf senescence.The mRNA is cell-to-cell mobile.	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT3G17900.2	protein_coding			unknown protein;(source:TAIR10)
AT5G18720.3	protein_coding			DNAJ heat shock amino-terminal domain protein, putative (DUF3444);(source:Araport11)
AT3G02365.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G10630;(source:Araport11)
AT3G04585.1	long_noncoding_rna			None;(source:Araport11)
AT5G54840.3	protein_coding		Monomeric G protein. Expressed in the root quiescent center, flowers, and leaf guard cells and hydathodes.	Ras-related small GTP-binding family protein;(source:Araport11)
AT1G26180.2	protein_coding			membrane protein;(source:Araport11)
AT1G09635.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G05807.1	long_noncoding_rna			None;(source:Araport11)
AT1G42540.4	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 3.3;(source:Araport11)
AT1G04907.1	small_nuclear_rna			U1;(source:Araport11)
AT5G43320.2	protein_coding		Member of CKL gene family (CKL-C group)	casein kinase I-like 8;(source:Araport11)
AT2G16980.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT1G04877.1	long_noncoding_rna			None;(source:Araport11)
AT3G22930.2	protein_coding		Encodes a calmodulin-like protein.	calmodulin-like 11;(source:Araport11)
AT2G16980.4	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G15270.3	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT2G16980.6	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G06175.1	novel_transcribed_region			novel transcribed region; detected in root, leaf, dark-grown seedling, light-grown seedling, flower, pollen;(source:Araport11)
AT1G06987.1	long_noncoding_rna			None;(source:Araport11)
AT1G68690.4	protein_coding		Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family.  This family consists of 15 predicted receptor kinases (PMID: 15653807).	Protein kinase superfamily protein;(source:Araport11)
AT1G17630.2	protein_coding		Encodes a PPR protein involved in mitochondrial functioning. Mutants suppress cell wall defects caused by C17 chemical inhibitor. Mutants are defective in cytochrome c maturation and activation of mitochondrial retrograde signalling.	Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT2G08585.1	small_nucleolar_rna			None;(source:Araport11)
AT4G09432.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G09430;(source:Araport11)
AT1G08823.1	other_rna			None;(source:Araport11)
AT1G30760.2	protein_coding		Encodes a BBE-like enzyme that acts in monolignol metabolism by catalyzing the oxidation of aromatic allylic alcohols, such as coumaryl-, sinapyl-, and coniferyl alcohol, to the corresponding aldehydes.The mRNA is cell-to-cell mobile.	FAD-binding Berberine family protein;(source:Araport11)
AT3G44405.4	protein_coding			hypothetical protein;(source:Araport11)
AT3G44405.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G44405.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G44405.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G08545.1	protein_coding			LRR receptor-like protein;(source:Araport11)
AT1G09467.1	small_nucleolar_rna			None;(source:Araport11)
AT1G42540.3	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 3.3;(source:Araport11)
AT1G52700.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52700.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52700.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52700.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G52700.6	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G08363.1	long_noncoding_rna			None;(source:Araport11)
AT2G23348.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G25550.2	protein_coding			myb-like transcription factor family protein;(source:Araport11)
AT4G06760.1	long_noncoding_rna			None;(source:Araport11)
AT1G07287.1	long_noncoding_rna			None;(source:Araport11)
AT2G23348.4	protein_coding			transmembrane protein;(source:Araport11)
AT5G53020.10	protein_coding			Ribonuclease P protein subunit P38-like protein;(source:Araport11)
AT3G60500.4	protein_coding		Encodes a 3 Prime-5 Prime exoribonuclease, positively regulates CER3 transcription, involved in cuticular wax biosynthesis.	3-5-exoribonuclease family protein;(source:Araport11)
AT1G06700.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G04103.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G02310;(source:Araport11)
AT5G03635.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G23680;(source:Araport11)
AT3G08335.1	long_noncoding_rna			None;(source:Araport11)
AT1G42540.2	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 3.3;(source:Araport11)
AT1G13640.2	protein_coding			Phosphatidylinositol 3- and 4-kinase family protein;(source:Araport11)
AT5G62165.13	protein_coding		Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT1G14453.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05535.1	long_noncoding_rna			None;(source:Araport11)
AT1G06720.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G02115.1	antisense_rna			Natural antisense transcript overlaps with AT3G09250;(source:Araport11)
AT5G09355.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT1G59790.2	protein_coding			Cullin family protein;(source:Araport11)
AT5G25756.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G21170.2	protein_coding			Exocyst complex component SEC5;(source:Araport11)
AT1G08260.2	protein_coding		Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.	DNA polymerase epsilon catalytic subunit;(source:Araport11)
AT1G78950.2	protein_coding			Terpenoid cyclases family protein;(source:Araport11)
AT4G04195.1	long_noncoding_rna			None;(source:Araport11)
AT5G41180.2	protein_coding			leucine-rich repeat transmembrane protein kinase family protein;(source:Araport11)
AT5G07285.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G48810;(source:Araport11)
AT1G62680.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G15175.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G15170;(source:Araport11)
AT3G44730.4	protein_coding			kinesin-like protein 1;(source:Araport11)
AT1G35353.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G17345.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G20130.3	protein_coding			plastid transcriptionally active 14;(source:Araport11)
AT4G20130.2	protein_coding			plastid transcriptionally active 14;(source:Araport11)
AT5G00585.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00470.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G78970.3	protein_coding		Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17&#946;-dammarenyl cation.	lupeol synthase 1;(source:Araport11)
AT5G07265.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G48730;(source:Araport11)
AT3G01311.2	protein_coding			actin cross-linking protein, putative (DUF569);(source:Araport11)
AT2G09770.1	long_noncoding_rna			None;(source:Araport11)
AT5G53420.4	protein_coding			CCT motif family protein;(source:Araport11)
AT1G55865.1	protein_coding			ubiquitin-protein ligase;(source:Araport11)
AT3G21070.4	protein_coding		Encodes a protein with NAD(H) kinase activity.	NAD kinase 1;(source:Araport11)
AT1G04243.1	long_noncoding_rna			None;(source:Araport11)
AT1G11220.2	protein_coding			cotton fiber, putative (DUF761);(source:Araport11)
AT3G21070.3	protein_coding		Encodes a protein with NAD(H) kinase activity.	NAD kinase 1;(source:Araport11)
AT2G34220.2	protein_coding			ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629);(source:Araport11)
AT1G63770.6	protein_coding			Peptidase M1 family protein;(source:Araport11)
AT1G01060.6	protein_coding		LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	Homeodomain-like superfamily protein;(source:Araport11)
AT5G19990.2	protein_coding		26S proteasome AAA-ATPase subunitThe mRNA is cell-to-cell mobile.	regulatory particle triple-A ATPase 6A;(source:Araport11)
AT3G18280.2	protein_coding			Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G09185.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09185.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09185.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G44730.3	protein_coding			kinesin-like protein 1;(source:Araport11)
AT5G03780.2	protein_coding		Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.	TRF-like 10;(source:Araport11)
AT5G03780.3	protein_coding		Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.	TRF-like 10;(source:Araport11)
AT1G09185.5	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09185.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G09735.1	long_noncoding_rna			None;(source:Araport11)
AT3G08685.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G56480;(source:Araport11)
AT3G02520.2	protein_coding		Encodes GF14 &#957;, a 14-3-3 protein isoform (14-3-3&#957;).	general regulatory factor 7;(source:Araport11)
AT1G60650.3	protein_coding		Encodes one of the zinc finger-containing glycine-rich RNA-binding proteins involved in cold tolerance: AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b), AT5G04280 (AtRZ-1c). It also, along with AtRZ-1c, plays important roles in plant development, pre- mRNA splicing, and general gene expression.	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT1G15360.2	protein_coding		Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G60650.4	protein_coding		Encodes one of the zinc finger-containing glycine-rich RNA-binding proteins involved in cold tolerance: AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b), AT5G04280 (AtRZ-1c). It also, along with AtRZ-1c, plays important roles in plant development, pre- mRNA splicing, and general gene expression.	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT2G18196.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G00820.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G67850.3	protein_coding			lysine ketoglutarate reductase trans-splicing protein (DUF707);(source:Araport11)
AT1G67850.4	protein_coding			lysine ketoglutarate reductase trans-splicing protein (DUF707);(source:Araport11)
AT1G67850.5	protein_coding			lysine ketoglutarate reductase trans-splicing protein (DUF707);(source:Araport11)
AT1G67850.6	protein_coding			lysine ketoglutarate reductase trans-splicing protein (DUF707);(source:Araport11)
AT1G67850.7	protein_coding			lysine ketoglutarate reductase trans-splicing protein (DUF707);(source:Araport11)
AT2G35738.8	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G35740;(source:Araport11)
AT1G49600.2	protein_coding			RNA-binding protein 47A;(source:Araport11)
AT1G02960.5	protein_coding			kinetochore protein;(source:Araport11)
AT1G02960.4	protein_coding			kinetochore protein;(source:Araport11)
AT1G02960.6	protein_coding			kinetochore protein;(source:Araport11)
AT3G28130.5	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G04053.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G01750;(source:Araport11)
AT1G72130.3	protein_coding		Tonoplast localized pH dependent, low affinity nitrogen transporter.In shoots,  expressed in leaf veins and mesophyll. In roots, GUS activity was detected in root vascular stele. More highly expressed in roots.	Major facilitator superfamily protein;(source:Araport11)
AT1G19115.4	protein_coding		Member of the IGT gene family.	hypothetical protein;(source:Araport11)
AT5G09925.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G67540;(source:Araport11)
AT5G08970.1	long_noncoding_rna			None;(source:Araport11)
AT3G59710.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G31350.3	protein_coding		Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II).	glyoxalase 2-5;(source:Araport11)
AT4G26180.2	protein_coding		Encodes a mitochondrial CoA transporter.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G09100.1	long_noncoding_rna			None;(source:Araport11)
AT4G22495.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G02940.4	protein_coding		Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase (class phi) 5;(source:Araport11)
AT1G02940.3	protein_coding		Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase (class phi) 5;(source:Araport11)
AT1G02940.2	protein_coding		Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase (class phi) 5;(source:Araport11)
AT3G44485.1	protein_coding			Low molecular weight phosphotyrosine protein phosphatase;(source:Araport11)
AT3G19460.6	protein_coding			Reticulon family protein;(source:Araport11)
AT1G70530.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 3;(source:Araport11)
AT3G19460.4	protein_coding			Reticulon family protein;(source:Araport11)
AT3G19460.5	protein_coding			Reticulon family protein;(source:Araport11)
AT3G19460.3	protein_coding			Reticulon family protein;(source:Araport11)
AT1G08807.1	long_noncoding_rna			None;(source:Araport11)
AT1G70530.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 3;(source:Araport11)
AT3G09645.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G61370;(source:Araport11)
AT1G27500.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G41670.2	protein_coding		Encodes SIN2 (SHORT INTEGUMENTS 2), a mitochondrial DAR GTPase. SIN2 is hypothesized to function in mitochondrial ribosome assembly. sin2 mutants produce ovules with short integuments due to early cessation of cell division in these structures.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G31885.3	protein_coding			NOD26-like intrinsic protein 3;(source:Araport11)
AT1G31885.2	protein_coding			NOD26-like intrinsic protein 3;(source:Araport11)
AT5G38280.2	protein_coding		putative receptor serine/threonine kinase PR5K (PR5K) mRNA,  PR5-like receptor kinase	PR5-like receptor kinase;(source:Araport11)
AT4G02965.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G24740.3	protein_coding			cellulose synthase, putative (DUF1644);(source:Araport11)
AT5G08285.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G55460;(source:Araport11)
AT4G04710.3	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent kinase-like protein;(source:Araport11)
AT1G06707.1	long_noncoding_rna			None;(source:Araport11)
AT1G30270.2	protein_coding		Arabidopsis thaliana CBL-interacting protein kinase 23.  CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylating AKT1.  CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9.The mRNA is cell-to-cell mobile.	CBL-interacting protein kinase 23;(source:Araport11)
AT1G30270.3	protein_coding		Arabidopsis thaliana CBL-interacting protein kinase 23.  CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylating AKT1.  CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9.The mRNA is cell-to-cell mobile.	CBL-interacting protein kinase 23;(source:Araport11)
AT1G65070.4	protein_coding			DNA mismatch repair protein MutS, type 2;(source:Araport11)
AT2G19150.2	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT5G09955.1	long_noncoding_rna			None;(source:Araport11)
AT5G51170.3	protein_coding			U6 snRNA phosphodiesterase-like protein;(source:Araport11)
AT5G13790.2	protein_coding		AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation. Role in embryogenesis and gibberellic acid  catabolism. Targets B3 domain transcription factors that are key regulators of embryogenesis.AGL15 binds the HAE promoter in floral receptacles and represses HAE expression. AGL15 is phosphorylated in a MKK4/5 dependent manner in floral receptacles. Serines 231 and 257 are phosphorylated in floral receptacles. AGL15 also directly regulates the expression of the peroxidase PRX17, linking it to lignified tissue expression.	AGAMOUS-like 15;(source:Araport11)
AT3G26440.6	protein_coding			transmembrane protein, putative (DUF707);(source:Araport11)
AT5G60100.6	protein_coding		Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.	pseudo-response regulator 3;(source:Araport11)
AT4G08550.2	protein_coding			electron carrier/ protein disulfide oxidoreductase;(source:Araport11)
AT5G37500.3	protein_coding		Encodes a guard cell outward potassium channel.  Belongs to the Shaker family K+ channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500). Mutants have increased water consumption and limited stomatal closure in response to abscisic and jasmonic acids. It forms a heteromeric K(out) channels with SKOR. The gene is expressed ubiquitously in root and the vasculature and guard cells of leaves. Expression is suppressed during agrobacterium-induced tumor formation and increased in response to water deprivation and cold.	gated outwardly-rectifying K+ channel;(source:Araport11)
AT5G37500.2	protein_coding		Encodes a guard cell outward potassium channel.  Belongs to the Shaker family K+ channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500). Mutants have increased water consumption and limited stomatal closure in response to abscisic and jasmonic acids. It forms a heteromeric K(out) channels with SKOR. The gene is expressed ubiquitously in root and the vasculature and guard cells of leaves. Expression is suppressed during agrobacterium-induced tumor formation and increased in response to water deprivation and cold.	gated outwardly-rectifying K+ channel;(source:Araport11)
AT3G24740.4	protein_coding			cellulose synthase, putative (DUF1644);(source:Araport11)
AT4G11320.2	protein_coding			Papain family cysteine protease;(source:Araport11)
AT3G08185.1	long_noncoding_rna			None;(source:Araport11)
AT3G27610.4	protein_coding			Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT3G10840.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G27610.6	protein_coding			Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT4G35310.2	protein_coding		calmodulin-domain protein kinase CDPK isoform 5 (CPK5)	calmodulin-domain protein kinase 5;(source:Araport11)
AT4G13330.6	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G27610.3	protein_coding			Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT5G66550.3	protein_coding			Maf-like protein;(source:Araport11)
AT5G02600.3	protein_coding		Encodes a phloem mobile metal binding protein necessary for phloem function and root meristem maintenance.	Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G08795.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G27610.9	protein_coding			Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT1G09695.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G31560.3	protein_coding			signal transducer/transcription protein, putative (DUF1685);(source:Araport11)
AT4G21660.3	protein_coding			proline-rich spliceosome-associated (PSP) family protein;(source:Araport11)
AT2G43465.3	protein_coding			RNA-binding ASCH domain protein;(source:Araport11)
AT2G43465.2	protein_coding			RNA-binding ASCH domain protein;(source:Araport11)
AT2G43465.5	protein_coding			RNA-binding ASCH domain protein;(source:Araport11)
AT2G43465.4	protein_coding			RNA-binding ASCH domain protein;(source:Araport11)
AT3G07885.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G48195;(source:Araport11)
AT1G45130.2	protein_coding			beta-galactosidase 5;(source:Araport11)
AT5G03245.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G20910;(source:Araport11)
AT1G24764.3	protein_coding		Member of the MAP70 protein family.	microtubule-associated proteins 70-2;(source:Araport11)
AT1G24764.2	protein_coding		Member of the MAP70 protein family.	microtubule-associated proteins 70-2;(source:Araport11)
AT1G65900.2	protein_coding			plant/protein;(source:Araport11)
AT4G34610.3	protein_coding			BEL1-like homeodomain 6;(source:Araport11)
AT4G07305.1	long_noncoding_rna			None;(source:Araport11)
AT1G69280.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G64970.3	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G05395.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G08320;(source:Araport11)
AT4G34610.4	protein_coding			BEL1-like homeodomain 6;(source:Araport11)
AT1G08777.1	long_noncoding_rna			None;(source:Araport11)
AT3G10840.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G49470.7	protein_coding		Encodes a protein with similarity to RAF MAP Kinase that is expressed in most plant tissues. Based on loss of function and gain of function phenotypes, RAF10 appears to be involved in ABA response.	PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT5G60100.4	protein_coding		Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.	pseudo-response regulator 3;(source:Araport11)
AT5G04175.1	antisense_rna			Natural antisense transcript overlaps with AT5G25930;(source:Araport11)
AT1G05087.1	protein_coding			dentin sialophosphoprotein;(source:Araport11)
AT5G02840.4	protein_coding		Encodes RVE4, a homolog of the circadian rhythm regulator RVE8. rve4 rve6 rve8 triple mutants display an extremely long circadian period, with delayed and reduced expression of evening-phased clock genes. Involved in heat shock response.	LHY/CCA1-like 1;(source:Araport11)
AT5G02840.5	protein_coding		Encodes RVE4, a homolog of the circadian rhythm regulator RVE8. rve4 rve6 rve8 triple mutants display an extremely long circadian period, with delayed and reduced expression of evening-phased clock genes. Involved in heat shock response.	LHY/CCA1-like 1;(source:Araport11)
AT5G65060.3	protein_coding		MADS domain protein - flowering regulator that is closely related to FLC	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G19200.2	protein_coding			cyclin-dependent kinase, putative (DUF581);(source:Araport11)
AT3G12640.2	protein_coding			RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G14340.2	protein_coding		Phosphorylates serine or threonine residues that are near and C-terminal to acidic side chains on a variety of target proteins	casein kinase I;(source:Araport11)
AT3G19670.2	protein_coding		Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold  for RNA processing machineries. Ubiquitously  expressed and localize to the nucleus.	pre-mRNA-processing protein 40B;(source:Araport11)
AT1G73130.2	protein_coding		ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	mucin;(source:Araport11)
AT4G13330.4	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G27970.4	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT5G27970.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT2G32390.7	protein_coding		Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family.	glutamate receptor 3.5;(source:Araport11)
AT2G32390.4	protein_coding		Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family.	glutamate receptor 3.5;(source:Araport11)
AT1G73130.3	protein_coding		ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	mucin;(source:Araport11)
AT1G62290.5	protein_coding			Saposin-like aspartyl protease family protein;(source:Araport11)
AT1G62290.4	protein_coding			Saposin-like aspartyl protease family protein;(source:Araport11)
AT1G03165.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G62290.6	protein_coding			Saposin-like aspartyl protease family protein;(source:Araport11)
AT3G00960.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G19210.3	protein_coding		Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases.  Functions in DNA repair via homologous recombination.	DNA repair/recombination protein;(source:Araport11)
AT3G06645.1	long_noncoding_rna			None;(source:Araport11)
AT1G01240.4	protein_coding			transmembrane protein;(source:Araport11)
AT3G08450.1	long_noncoding_rna			None;(source:Araport11)
AT3G01085.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G01085.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G28670.3	protein_coding			oxidoreductase, zinc-binding dehydrogenase family protein;(source:Araport11)
AT3G28670.2	protein_coding			oxidoreductase, zinc-binding dehydrogenase family protein;(source:Araport11)
AT4G38920.2	protein_coding			vacuolar-type H[+]-ATPase C3;(source:Araport11)
AT1G73130.4	protein_coding		ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	mucin;(source:Araport11)
AT3G11470.8	protein_coding			4-phosphopantetheinyl transferase superfamily;(source:Araport11)
AT1G21610.4	protein_coding			wound-responsive family protein;(source:Araport11)
AT4G23450.4	protein_coding		AtAIRP1 gene encodes a C3H2C3-type RING E3 Ub ligase. It has been shown to be a positive regulator in the Arabidopsis ABA-dependent drought response.	RING/U-box superfamily protein;(source:Araport11)
AT1G21610.6	protein_coding			wound-responsive family protein;(source:Araport11)
AT1G73130.5	protein_coding		ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	mucin;(source:Araport11)
AT3G09935.1	long_noncoding_rna			None;(source:Araport11)
AT5G09215.1	long_noncoding_rna			None;(source:Araport11)
AT1G63360.2	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT3G00330.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G03040.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G14770.2	protein_coding			PPR repeat protein;(source:Araport11)
AT5G19070.2	protein_coding			SNARE associated Golgi protein family;(source:Araport11)
AT4G14880.5	protein_coding		Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma.  Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA. Lines carrying semi-dominant mutations exhibit early senescence. Required for pollen tube growth and/or fertilization.	O-acetylserine (thiol) lyase (OAS-TL) isoform A1;(source:Araport11)
AT5G55855.2	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT5G63060.2	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G72840.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G04525.1	long_noncoding_rna			None;(source:Araport11)
AT5G47130.3	protein_coding			Bax inhibitor-1 family protein;(source:Araport11)
AT4G35520.3	protein_coding		DNA mismatch repair protein similar to MutL. Required for normal levels of meiotic crossovers	MUTL protein homolog 3;(source:Araport11)
AT4G30210.3	protein_coding		Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway.The mRNA is cell-to-cell mobile.	P450 reductase 2;(source:Araport11)
AT1G09367.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G73100;(source:Araport11)
AT2G47860.4	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G16780.3	protein_coding		Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower.	SART-1 family;(source:Araport11)
AT4G15880.2	protein_coding		EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering.   Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development.The mRNA is cell-to-cell mobile.	Cysteine proteinases superfamily protein;(source:Araport11)
AT1G05783.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G07890.3	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT3G50620.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G50620.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G01745.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G05760;(source:Araport11)
AT4G13410.2	protein_coding		encodes a gene similar to cellulose synthase	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT4G13410.3	protein_coding		encodes a gene similar to cellulose synthase	Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT5G39970.3	protein_coding			catalytics;(source:Araport11)
AT5G47090.2	protein_coding			coiled-coil protein;(source:Araport11)
AT1G17110.3	protein_coding		Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant.	ubiquitin-specific protease 15;(source:Araport11)
AT3G08390.1	long_noncoding_rna			None;(source:Araport11)
AT4G35520.7	protein_coding		DNA mismatch repair protein similar to MutL. Required for normal levels of meiotic crossovers	MUTL protein homolog 3;(source:Araport11)
AT4G02785.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G38160.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G49730.2	protein_coding		Encodes a putative ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner.  However, in vitro assays in yeast have not shown ferric chelate reductase activity for this protein.  T	ferric reduction oxidase 6;(source:Araport11)
AT1G05767.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G22810;(source:Araport11)
AT3G17210.2	protein_coding		Encodes a heat stable protein with antimicrobial and antifungal activity.	heat stable protein 1;(source:Araport11)
AT1G05767.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G22810;(source:Araport11)
AT3G01765.1	long_noncoding_rna			None;(source:Araport11)
AT2G04855.1	long_noncoding_rna			None;(source:Araport11)
AT3G26165.2	pseudogene		putative cytochrome P450.	pseudogene of cytochrome P450;(source:Araport11)
AT1G05027.1	long_noncoding_rna			None;(source:Araport11)
AT1G09255.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G01750.2	protein_coding			actin depolymerizing factor 11;(source:Araport11)
AT4G28755.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G51360.9	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G51360.8	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G57870.4	protein_coding			shaggy-like kinase 42;(source:Araport11)
AT3G51360.5	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G51360.4	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G51360.7	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G51360.6	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G57260.2	protein_coding		beta 1,3-glucanase	beta-1,3-glucanase 2;(source:Araport11)
AT3G51360.3	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G51360.2	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G40860.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G16080.2	protein_coding			Zinc-binding ribosomal protein family protein;(source:Araport11)
AT2G39310.4	protein_coding			jacalin-related lectin 22;(source:Araport11)
AT1G13805.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G37715.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G00520.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G10450.4	protein_coding			serine carboxypeptidase-like 7;(source:Araport11)
AT1G19360.2	protein_coding		Encodes an arabinosyltransferase that modifies extensin proteins in root hair cells.	Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT3G07445.2	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT5G59150.2	protein_coding			RAB GTPase homolog A2D;(source:Araport11)
AT3G10450.3	protein_coding			serine carboxypeptidase-like 7;(source:Araport11)
AT4G19510.9	protein_coding			Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT4G19510.8	protein_coding			Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT4G03440.3	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT4G19510.5	protein_coding			Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT4G19510.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT4G19510.7	protein_coding			Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT4G19510.6	protein_coding			Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G00530.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G59130.4	protein_coding			Subtilase family protein;(source:Araport11)
AT3G49400.4	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G48430.2	protein_coding			Dihydroxyacetone kinase;(source:Araport11)
AT2G37900.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G49400.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G07793.1	long_noncoding_rna			None;(source:Araport11)
AT3G01975.1	long_noncoding_rna			None;(source:Araport11)
AT4G21180.2	protein_coding		J domain protein localized in ER membrane.	DnaJ / Sec63 Brl domains-containing protein;(source:Araport11)
AT3G22900.2	protein_coding		Non-catalytic subunit specific to DNA-directed RNA polymerase IV; homologous to budding yeast RPB7	RNA polymerase Rpb7-like, N-terminal domain-containing protein;(source:Araport11)
AT4G05810.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G10730;(source:Araport11)
AT3G05700.2	protein_coding		Encodes a DNA binding protein with transcription activation activity. It is expressed in response to osmotic, drought and ABA stress.	Drought-responsive family protein;(source:Araport11)
AT1G05777.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G22850;(source:Araport11)
AT5G00865.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G02530;(source:Araport11)
AT2G07623.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G11045.1	protein_coding			ATP-binding protein;(source:Araport11)
AT4G05930.1	miRNA_primary_transcript			microRNA ath-MIR8179 precursor;(source:Araport11)
AT3G46930.2	protein_coding		Encodes a Raf-Like Mitogen-Activated Protein Kinase Kinase Kinase Raf43. Required for tolerance to multiple abiotic stresses.	Protein kinase superfamily protein;(source:Araport11)
AT5G45430.uORF1	uORF			Derives_from AT5G45430;(source:Araport11)
AT1G56540.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G17227.1	protein_coding			plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G23460.2	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT5G47160.2	protein_coding			YDG/SRA domain-containing protein;(source:Araport11)
AT2G26550.4	protein_coding		Encodes a heme oxygenase-like protein lacking the conserved histidine residue at the active site that is usually involved in heme-iron coordination.  It is unable to bind and degrade heme.  Mutant analyses suggest a role in photomorphogenesis.  The protein can bind the heme precursor, proto IX, which could be biologically significant and point to a role in the regulation of the two tetrapyrrole biosynthetic pathways.	heme oxygenase 2;(source:Araport11)
AT1G79950.2	protein_coding		Encodes a homologue of human Regulator of Telomere Elongation Helicase1 (RTEL1). Plays a central role in the preservation of genome stability.	RAD3-like DNA-binding helicase protein;(source:Araport11)
AT3G46930.4	protein_coding		Encodes a Raf-Like Mitogen-Activated Protein Kinase Kinase Kinase Raf43. Required for tolerance to multiple abiotic stresses.	Protein kinase superfamily protein;(source:Araport11)
AT1G79950.6	protein_coding		Encodes a homologue of human Regulator of Telomere Elongation Helicase1 (RTEL1). Plays a central role in the preservation of genome stability.	RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G79950.7	protein_coding		Encodes a homologue of human Regulator of Telomere Elongation Helicase1 (RTEL1). Plays a central role in the preservation of genome stability.	RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G79950.4	protein_coding		Encodes a homologue of human Regulator of Telomere Elongation Helicase1 (RTEL1). Plays a central role in the preservation of genome stability.	RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G79950.5	protein_coding		Encodes a homologue of human Regulator of Telomere Elongation Helicase1 (RTEL1). Plays a central role in the preservation of genome stability.	RAD3-like DNA-binding helicase protein;(source:Araport11)
AT3G22420.4	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.  Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 2;(source:Araport11)
AT3G22420.5	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.  Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 2;(source:Araport11)
AT3G22420.6	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.  Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 2;(source:Araport11)
AT1G18610.2	protein_coding		Galactose oxidase/kelch repeat superfamily protein, induced by calcium.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G22420.3	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.  Its transcription is under the control of circadian rhythms.	with no lysine (K) kinase 2;(source:Araport11)
AT1G09995.4	protein_coding			DNA repair DEAD helicase RAD3/XP-D subfamily protein;(source:Araport11)
AT1G09995.5	protein_coding			DNA repair DEAD helicase RAD3/XP-D subfamily protein;(source:Araport11)
AT5G04040.2	protein_coding		Encodes a triacylglycerol lipase that is involved in storage lipid breakdown during seed germination. The mutant plant exhibits a much slower rate of postgerminative growth than the wild type.	Patatin-like phospholipase family protein;(source:Araport11)
AT2G47380.2	protein_coding			Cytochrome c oxidase subunit Vc family protein;(source:Araport11)
AT2G18685.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G09223.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G71260;(source:Araport11)
AT1G09995.2	protein_coding			DNA repair DEAD helicase RAD3/XP-D subfamily protein;(source:Araport11)
AT1G09995.3	protein_coding			DNA repair DEAD helicase RAD3/XP-D subfamily protein;(source:Araport11)
AT1G78960.4	protein_coding		Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.	lupeol synthase 2;(source:Araport11)
AT3G20320.3	protein_coding		Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	trigalactosyldiacylglycerol2;(source:Araport11)
AT1G79970.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G02415.1	long_noncoding_rna			None;(source:Araport11)
AT2G08715.1	long_noncoding_rna			None;(source:Araport11)
AT4G04275.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G02710;(source:Araport11)
AT1G34812.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G44870.2	protein_coding		Encodes LAZ5, a TIR-class NB-LRR R protein of unknown pathogen specificity with sequence similarity to RPS4, an R protein conferring resistance to Pseudomonas syringae expressing the effector AvrRPS4.  Overexpression of LAZ5 results in hypersensitive cell death (plants did not survive to set seeds).	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G43300.2	protein_coding		Encodes a member of the glycerophosphodiester phosphodiesterase (GDPD) family.	PLC-like phosphodiesterases superfamily protein;(source:Araport11)
AT5G43068.1	protein_coding		Encodes a PAMP-INDUCED SECRETED PEPTIDE-like peptide that is responsive to chitin stimulus.	transmembrane protein;(source:Araport11)
AT1G19870.2	protein_coding		Encodes a microtubule-associated protein.Member of IQ67 (CaM binding) domain containing family.	IQ-domain 32;(source:Araport11)
AT5G10890.2	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT3G27990.2	antisense_long_noncoding_rna			None;(source:Araport11)
AT2G06615.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G16365;(source:Araport11)
AT2G23380.2	protein_coding		Similar to the product of the Polycomb-group gene Enhancer of zeste. Catalytic component of the PRC2 complex.Required for stable repression of AG and AP3. Putative role in cell fate determination.  Involved in the control of leaf morphogenesis. mutants exhibit curled, involute leaves. AGAMOUS and APETALA3 are ectopically expressed in the mutant.	SET domain-containing protein;(source:Araport11)
AT2G04895.1	long_noncoding_rna			None;(source:Araport11)
AT1G23180.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT2G04790.16	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G04790.15	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G04790.14	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G04790.13	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G04790.12	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G04790.11	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT2G04790.10	protein_coding			PTB domain engulfment adapter;(source:Araport11)
AT1G01920.3	protein_coding			SET domain-containing protein;(source:Araport11)
AT2G19960.4	protein_coding			hAT family dimerization domain-containing protein;(source:Araport11)
AT3G09025.1	long_noncoding_rna			None;(source:Araport11)
AT3G56130.5	protein_coding			biotin/lipoyl attachment domain-containing protein;(source:Araport11)
AT2G19960.3	protein_coding			hAT family dimerization domain-containing protein;(source:Araport11)
AT3G43415.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT1G58410.4	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT3G54300.3	protein_coding		Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal.	vesicle-associated membrane protein 727;(source:Araport11)
AT1G58410.2	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G58410.3	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G49050.3	protein_coding		Encodes a member of the aspartyl protease family. Interacts with BAGP1 and BAG6 and appears to be required for cleavage of BAG6 as BAG6 is not cleaved in APCB1 mutant backgrounds.	Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G06210.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT1G08747.2	antisense_rna			Natural antisense transcript overlaps with AT1G65230;(source:Araport11)
AT5G44030.3	protein_coding		Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.The mRNA is cell-to-cell mobile.	cellulose synthase A4;(source:Araport11)
AT5G04615.1	long_noncoding_rna			None;(source:Araport11)
AT3G53170.2	protein_coding			LOW protein: PPR containing protein;(source:Araport11)
AT3G53170.3	protein_coding			LOW protein: PPR containing protein;(source:Araport11)
AT5G32670.1	protein_coding			START domain protein;(source:Araport11)
AT5G65740.8	protein_coding			zinc ion binding protein;(source:Araport11)
AT2G31220.2	protein_coding		Encodes a bHLH transcription factor that together with bHLH089 and bHLH091 is important for the normal transcriptome of the developing Arabidopsis anther, possibly by forming a feed-forward loop with DYT1.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G53170.4	protein_coding			LOW protein: PPR containing protein;(source:Araport11)
AT1G27720.3	protein_coding			TBP-associated factor 4B;(source:Araport11)
AT4G20760.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G30700.2	protein_coding			GPI-anchored protein;(source:Araport11)
AT1G78880.uORF1	uORF		Plasma membrane-localized proteins that negatively regulate cellulose synthesis by inhibiting the exocytosis of CESAs.	Derives_from AT1G78880;(source:Araport11)
AT5G15310.4	protein_coding		Member of the R2R3 factor gene family.	myb domain protein 16;(source:Araport11)
AT2G06025.7	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G73910.3	protein_coding		Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component  of chromatin remodeling complexes, involved in chromatin-mediated gene regulation.	actin-related proteins 4A;(source:Araport11)
AT5G07195.1	long_noncoding_rna			None;(source:Araport11)
AT2G16370.2	protein_coding		Isoform found in leaves. The putative protein encoded by this leaf RNA transcript is truncated to 420 amino acids in length with the first 406 residues matching At2g16370.1, therefore still retaining the DHFR domain, but disrupting its TS domain (PMID:29876984).	thymidylate synthase 1;(source:Araport11)
AT2G16370.3	protein_coding		Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene.  This is unique in Arabidopsis and protozoa.  Other organisms have independent genes for  this function.	thymidylate synthase 1;(source:Araport11)
AT3G09145.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G58710;(source:Araport11)
AT5G17690.2	protein_coding		Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific  genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic  regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state.	like heterochromatin protein (LHP1);(source:Araport11)
AT2G14775.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G18350.2	protein_coding			Plant protein of unknown function (DUF639);(source:TAIR10)
AT1G06537.1	long_noncoding_rna			None;(source:Araport11)
AT1G57600.3	protein_coding			MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT5G65740.9	protein_coding			zinc ion binding protein;(source:Araport11)
AT1G27720.4	protein_coding			TBP-associated factor 4B;(source:Araport11)
AT1G57600.4	protein_coding			MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT5G10580.4	protein_coding			plant/protein (Protein of unknown function, DUF599);(source:Araport11)
AT4G27970.3	protein_coding		Encodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane.	SLAC1 homologue 2;(source:Araport11)
AT1G07803.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G52340;(source:Araport11)
AT4G27970.6	protein_coding		Encodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane.	SLAC1 homologue 2;(source:Araport11)
AT4G27970.4	protein_coding		Encodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane.	SLAC1 homologue 2;(source:Araport11)
AT5G10580.3	protein_coding			plant/protein (Protein of unknown function, DUF599);(source:Araport11)
AT1G21350.4	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT1G70490.4	protein_coding		A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	Ras-related small GTP-binding family protein;(source:Araport11)
AT5G03085.1	long_noncoding_rna			None;(source:Araport11)
AT1G11510.2	protein_coding			DNA-binding storekeeper protein-related transcriptional regulator;(source:Araport11)
AT1G68710.2	protein_coding			ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT1G68710.3	protein_coding			ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT3G08710.3	protein_coding		Associated to plasma membrane. Moves cell to cell, suggesting a role in intercellular communication.	thioredoxin H-type 9;(source:Araport11)
AT5G66670.3	protein_coding			pectinesterase, putative (DUF677);(source:Araport11)
AT1G07827.1	small_nuclear_rna			U6;(source:Araport11)
AT4G23355.1	protein_coding			carboxyl-terminal peptidase;(source:Araport11)
AT1G16460.5	protein_coding		encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast.  Can also act as a mercaptopyruvate sulfurtransferase.	rhodanese homologue 2;(source:Araport11)
AT5G04665.1	long_noncoding_rna			None;(source:Araport11)
AT5G66670.4	protein_coding			pectinesterase, putative (DUF677);(source:Araport11)
AT1G44180.3	protein_coding			Peptidase M20/M25/M40 family protein;(source:Araport11)
AT1G44180.2	protein_coding			Peptidase M20/M25/M40 family protein;(source:Araport11)
AT4G30980.2	protein_coding		Encodes a basic helix-loop-helix (bHLH) protein that regulates root hair and sperm cell development.  One of the three Arabidopsis homologs of the Lotus japonicus ROOTHAIRLESS1 (LjRHL1) gene: At2g24260 (AtLRL1), At4g30980 (AtLRL2), and At5g58010 (AtLRL3).	LJRHL1-like 2;(source:Araport11)
AT3G03245.1	miRNA_primary_transcript			microRNA ath-MIR2934 precursor;(source:Araport11)
AT1G61562.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G37170.3	protein_coding			O-methyltransferase family protein;(source:Araport11)
AT5G17870.2	protein_coding		plastid-specific ribosomal protein 6 precursor (Psrp-6) - like	plastid-specific 50S ribosomal protein 6;(source:Araport11)
AT2G08240.1	long_noncoding_rna			None;(source:Araport11)
AT5G28050.3	protein_coding			Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT1G23240.4	protein_coding			Caleosin-related family protein;(source:Araport11)
AT2G03600.6	protein_coding		Encodes UPS3 (ureide permease 3), similar to UPS1, an allantoin transporter.	ureide permease 3;(source:Araport11)
AT4G22370.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G25098.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G25097;(source:Araport11)
AT1G19850.uORF1	uORF			Derives_from AT1G19850;(source:Araport11)
AT1G08592.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G08590;(source:Araport11)
AT1G25098.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G25097;(source:Araport11)
AT3G52072.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52070;(source:Araport11)
AT3G59660.2	protein_coding		Encodes a C2-GRAM domain-containing protein that is induced by B. cinerea infection. It is required for cleavage of BAG6 and thus plays a role in mediating resistance to fungal infection.	C2 domain-containing protein / GRAM domain-containing protein;(source:Araport11)
AT4G11373.1	protein_coding			Serine/Threonine kinase catalytic domain protein;(source:Araport11)
AT3G02310.2	protein_coding		MADS-box protein, binds K domain of AG in vivo	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT5G18245.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G18240;(source:Araport11)
AT5G65120.2	protein_coding			DNA-directed RNA polymerase subunit beta;(source:Araport11)
AT1G07283.1	miRNA_primary_transcript			microRNA ath-MIR5025 precursor;(source:Araport11)
AT3G58220.5	protein_coding			TRAF-like family protein;(source:Araport11)
AT3G58220.4	protein_coding			TRAF-like family protein;(source:Araport11)
AT4G39270.10	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G04415.1	long_noncoding_rna			None;(source:Araport11)
AT2G02635.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06527.1	long_noncoding_rna			None;(source:Araport11)
AT1G09297.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G72070;(source:Araport11)
AT1G72660.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G06755.1	long_noncoding_rna			None;(source:Araport11)
AT2G07485.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G22000;(source:Araport11)
AT1G05460.2	protein_coding		Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G32330.2	protein_coding		Member of Heat Stress Transcription Factor (Hsf) family. Negatively regulated by HSP90.2.	heat shock transcription factor A1D;(source:Araport11)
AT4G26145.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G04905.1	long_noncoding_rna			None;(source:Araport11)
AT3G55020.3	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT1G67865.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G19180.2	protein_coding		Encodes a subunit of a RUB-activating enzyme analogous to the E1 ubiquitin-activating enzyme. ECR1 functions as a heterodimer with AXR1 to activate RUB, a ubiquitin-related protein.	E1 C-terminal related 1;(source:Araport11)
AT5G57910.2	protein_coding			ribosomal RNA small subunit methyltransferase G;(source:Araport11)
AT1G05213.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G15950;(source:Araport11)
AT5G52230.3	protein_coding		Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain protein 13;(source:Araport11)
AT2G33110.2	protein_coding		member of VAMP72 Gene Family	vesicle-associated membrane protein 723;(source:Araport11)
AT2G04300.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G01023.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G07690.2	protein_coding			6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT2G17150.3	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT2G17150.5	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT2G17150.4	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT4G28280.3	protein_coding			LORELEI-LIKE-GPI ANCHORED PROTEIN 3;(source:Araport11)
AT2G17150.6	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT2G00640.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G56660.2	protein_coding			MAEBL domain protein;(source:Araport11)
AT3G03945.1	long_noncoding_rna			None;(source:Araport11)
AT2G07995.1	long_noncoding_rna			None;(source:Araport11)
AT3G04760.2	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G35530.5	protein_coding		Encodes FANCM, a highly conserved helicase that functions as a major factor limiting meiotic crossover formation. It is not directly involved in the repair of DNA lesions but suppresses spontaneous somatic homologous recombination via a RecQ helicase (At-RECQ4A)-independent pathway.	DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT2G02410.7	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT1G32230.5	protein_coding		Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family.  Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants.  Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.The mRNA is cell-to-cell mobile.	WWE protein-protein interaction domain protein family;(source:Araport11)
AT2G08195.1	long_noncoding_rna			None;(source:Araport11)
AT5G43470.4	protein_coding		Confers resistance to Peronospora parasitica. In arabidopsis ecotype Dijon-17, HRT-mediated signaling is dependent on light for the induction of  hypersensitive response and resistance to turnip crinkle virus.	Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G54355.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G54350;(source:Araport11)
AT2G00790.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G55930.2	protein_coding			CBS domain-containing protein / transporter associated domain-containing protein;(source:Araport11)
AT5G59830.3	protein_coding			DNA-binding protein;(source:Araport11)
AT3G07335.1	long_noncoding_rna			None;(source:Araport11)
AT4G11410.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G03975.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G25450;(source:Araport11)
AT4G24590.2	protein_coding			RING finger protein;(source:Araport11)
AT5G21170.3	protein_coding		Encodes AKINbeta1, a subunit of the SnRK1 kinase (Sucrose non-fermenting-1-related protein kinase).  Involved in regulation of nitrogen and sugar metabolism. As part of the regulatory subunit, it binds maltose which promotes kinase activity.	5-AMP-activated protein kinase beta-2 subunit protein;(source:Araport11)
AT3G01850.3	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT4G11470.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 31;(source:Araport11)
AT1G73390.6	protein_coding			Endosomal targeting BRO1-like domain-containing protein;(source:Araport11)
AT3G03180.2	protein_coding			Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT1G52857.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G57787.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G21270.5	protein_coding			ubiquitin fusion degradation 1;(source:Araport11)
AT4G09720.5	protein_coding			RAB GTPase homolog G3A;(source:Araport11)
AT1G09287.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G71950;(source:Araport11)
AT1G05423.1	small_nucleolar_rna			None;(source:Araport11)
AT1G22980.2	protein_coding			Grap2/cyclin-D-interacting protein;(source:Araport11)
AT3G07725.1	small_nucleolar_rna			None;(source:Araport11)
AT5G34940.4	protein_coding		The protein is predicted  (WoLF PSORT program) to be membrane-associated.	glucuronidase 3;(source:Araport11)
AT1G13560.3	protein_coding		Encodes aminoalcoholphosphotransferase AAPT1.	aminoalcoholphosphotransferase 1;(source:Araport11)
AT4G26420.3	protein_coding		A member of the Arabidopsis SABATH methyltransferase gene family.  Encodes GAMT1, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs).  Expressed most highly in the siliques during seed development. SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G59520.5	protein_coding		Encodes CW7.	CW7;(source:Araport11)
AT5G55490.9	protein_coding		Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.	gamete expressed protein 1;(source:Araport11)
AT5G55490.8	protein_coding		Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.	gamete expressed protein 1;(source:Araport11)
AT2G08075.1	long_noncoding_rna			None;(source:Araport11)
AT5G09330.uORF1	uORF			Derives_from AT5G09330;(source:Araport11)
AT1G65486.3	protein_coding		Secreted peptide which functions in plant growth and pathogen defense.	transmembrane protein;(source:Araport11)
AT5G13870.3	protein_coding		EXGT-A4, endoxyloglucan transferase,	xyloglucan endotransglucosylase/hydrolase 5;(source:Araport11)
AT5G13870.2	protein_coding		EXGT-A4, endoxyloglucan transferase,	xyloglucan endotransglucosylase/hydrolase 5;(source:Araport11)
AT5G55490.5	protein_coding		Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.	gamete expressed protein 1;(source:Araport11)
AT5G55490.4	protein_coding		Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.	gamete expressed protein 1;(source:Araport11)
AT5G55490.7	protein_coding		Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.	gamete expressed protein 1;(source:Araport11)
AT5G55490.6	protein_coding		Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.	gamete expressed protein 1;(source:Araport11)
AT1G07390.5	protein_coding			receptor like protein 1;(source:Araport11)
AT1G07390.4	protein_coding			receptor like protein 1;(source:Araport11)
AT1G06857.1	long_noncoding_rna			None;(source:Araport11)
AT5G09765.1	long_noncoding_rna			None;(source:Araport11)
AT5G00415.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G08055.1	long_noncoding_rna			None;(source:Araport11)
AT5G45170.2	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G74340.2	protein_coding		Encodes a subunit of the dolichol phosphate mannase synthase (DPMS) complex that may serve as membrane anchors for the catalytic core, DPMS1, or provide catalytic assistance. It is localized in the ER and mediates isoprenyl-linked glycan biogenesis.	dolichol phosphate-mannose biosynthesis regulatory protein-like protein;(source:Araport11)
AT4G21400.7	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 28;(source:Araport11)
AT3G03335.1	long_noncoding_rna			None;(source:Araport11)
AT1G42560.2	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO9 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO10. The gene is expressed during early seedling growth, in cotyledon vascular system, in flowers (with strong expression in anthers) in siliques and fruit abscission zone; not expressed in roots, or in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT3G14540.2	protein_coding		Encodes a sesterterpene synthase responsible for the biosynthesis of the pentacyclic sesterterpene (&#8722;)-retigeranin B with a 5- 5-5-6-5 fused ring system.	Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT3G49060.3	protein_coding			U-box domain-containing protein kinase family protein;(source:Araport11)
AT5G61910.5	protein_coding			DCD (Development and Cell Death) domain protein;(source:Araport11)
AT5G05235.1	long_noncoding_rna			None;(source:Araport11)
AT4G02655.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G06710.19	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G48470.2	protein_coding			embryo defective 2423;(source:Araport11)
AT1G27120.2	protein_coding		Encodes a Golgi-localized hydroxyproline-O-galactosyltransferase.	Galactosyltransferase family protein;(source:Araport11)
AT5G56620.2	protein_coding			NAC domain containing protein 99;(source:Araport11)
AT1G26600.2	protein_coding		Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon. Can partially replace CLV3 function in vivo.	CLAVATA3/ESR-RELATED 9;(source:Araport11)
AT5G35330.4	protein_coding		Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	methyl-CPG-binding domain protein 02;(source:Araport11)
AT1G36070.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G36070.4	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G36070.5	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G09115.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G06565.1	long_noncoding_rna			None;(source:Araport11)
AT4G00450.2	protein_coding		Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.	RNA polymerase II transcription mediator;(source:Araport11)
AT4G00450.3	protein_coding		Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.	RNA polymerase II transcription mediator;(source:Araport11)
AT4G18372.2	protein_coding			Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT3G21600.3	protein_coding			Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT2G16700.4	protein_coding		Encodes actin depolymerizing factor 5 (ADF5).	actin depolymerizing factor 5;(source:Araport11)
AT2G16700.3	protein_coding		Encodes actin depolymerizing factor 5 (ADF5).	actin depolymerizing factor 5;(source:Araport11)
AT4G06820.1	long_noncoding_rna			None;(source:Araport11)
AT5G27893.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G33330.3	protein_coding			Class I peptide chain release factor;(source:Araport11)
AT3G18035.2	protein_coding		A linker histone like protein	winged-helix DNA-binding transcription factor family protein;(source:Araport11)
AT2G00780.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G08465.1	long_noncoding_rna			None;(source:Araport11)
AT4G16040.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G00375.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G07902.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G10170.4	protein_coding		Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1.  Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.	NF-X-like 1;(source:Araport11)
AT3G44740.2	protein_coding			Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT4G05235.1	long_noncoding_rna			None;(source:Araport11)
AT3G01785.1	long_noncoding_rna			None;(source:Araport11)
AT1G08947.1	long_noncoding_rna			None;(source:Araport11)
AT2G39740.3	protein_coding		Encodes HESO1 (HEN1 suppressor 1), a terminal nucleotidyl transferase that uridylates miRNAs and siRNAs at 3&#8242; end. HESO1-mediated 3&#8242; uridylation destabilizes small RNAs in hen1.	Nucleotidyltransferase family protein;(source:Araport11)
AT3G60480.2	protein_coding			StAR lipid transfer-like protein;(source:Araport11)
AT3G60480.3	protein_coding			StAR lipid transfer-like protein;(source:Araport11)
AT5G40540.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G16070.3	protein_coding		An integral outer envelope membrane protein (its homolog in A thaliana PDV1), component of the plastid division machinery. Similar to ARC6, PDV2 localizes to a continuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site.	plastid division2;(source:Araport11)
AT1G06273.1	small_nucleolar_rna			None;(source:Araport11)
AT1G07653.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G50570;(source:Araport11)
AT5G40540.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G37780.4	protein_coding		encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.	calmodulin 1;(source:Araport11)
AT1G02020.3	protein_coding			nitroreductase family protein;(source:Araport11)
AT5G07920.3	protein_coding		Encodes a putative diacylglycerol kinase that is mainly expressed in roots, shoots and leaves, but its enzyme product was not active in vitro.	diacylglycerol kinase1;(source:Araport11)
AT1G69540.2	protein_coding		Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators.	AGAMOUS-like 94;(source:Araport11)
AT5G40540.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G01970.2	protein_coding		Encodes a a raffinose and high affinity stachyose synthase as well as a stachyose and Gol specific galactosylhydrolase enzyme activity.AtRS4 is a sequential multifunctional RafS and StaS as well as a high affinity StaS, accepting only Raf and Gol for Sta product formation.  AtRS4 possesses a Sta and Gol specific galactosylhydrolase enzyme activity.	stachyose synthase;(source:Araport11)
AT1G05320.5	protein_coding			myosin heavy chain, embryonic smooth protein;(source:Araport11)
AT5G59350.3	protein_coding			transmembrane protein;(source:Araport11)
AT3G29633.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G54970.6	protein_coding			D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT3G54970.5	protein_coding			D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT1G09773.1	long_noncoding_rna			None;(source:Araport11)
AT3G54970.3	protein_coding			D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT3G44960.5	protein_coding			shugoshin;(source:Araport11)
AT1G06263.1	small_nucleolar_rna			None;(source:Araport11)
AT5G62260.2	protein_coding			AT hook motif DNA-binding family protein;(source:Araport11)
AT5G62260.3	protein_coding			AT hook motif DNA-binding family protein;(source:Araport11)
AT1G01080.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G24515.2	protein_coding			ubiquitin-conjugating enzyme 37;(source:Araport11)
AT2G43120.2	protein_coding		Encodes a member of the functionally diverse cupin protein superfamily that is involved in susceptibility to the bacterial plant pathogen Ralstonia solanacearum.  It stabilizes the papain-like cysteine protease XCP2.The mRNA is cell-to-cell mobile.	RmlC-like cupins superfamily protein;(source:Araport11)
AT4G22035.1	protein_coding			F-box only protein;(source:Araport11)
AT2G46970.3	protein_coding		encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.	phytochrome interacting factor 3-like 1;(source:Araport11)
AT3G43210.3	protein_coding		Encodes a kinesin TETRASPORE. Required for cytokinesis in pollen. In mutants, all four microspore nuclei remain within the same cytoplasm after meiosis.	ATP binding microtubule motor family protein;(source:Araport11)
AT3G07755.1	miRNA_primary_transcript			microRNA ath-MIR8167b precursor;(source:Araport11)
AT1G19850.uORF3	uORF			Derives_from AT1G19850;(source:Araport11)
AT1G72175.2	protein_coding			E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232);(source:Araport11)
AT3G08985.1	long_noncoding_rna			None;(source:Araport11)
AT1G14810.2	protein_coding		encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis	semialdehyde dehydrogenase family protein;(source:Araport11)
AT4G15610.2	protein_coding			Uncharacterized protein family (UPF0497);(source:Araport11)
AT1G13830.2	protein_coding			Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT5G62950.4	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT5G24230.3	protein_coding			Lipase class 3-related protein;(source:Araport11)
AT3G09545.1	long_noncoding_rna			None;(source:Araport11)
AT5G03225.1	miRNA_primary_transcript			microRNA ath-MIR8167d precursor;(source:Araport11)
AT5G62950.5	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT4G03275.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G06415.1	long_noncoding_rna			None;(source:Araport11)
AT3G32920.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G32920.5	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G07975.2	antisense_rna			Natural antisense transcript overlaps with AT4G28080;(source:Araport11)
AT4G01040.2	protein_coding			Glycosyl hydrolase superfamily protein;(source:Araport11)
AT3G32920.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G02061.2	protein_coding			Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT4G05655.1	long_noncoding_rna			None;(source:Araport11)
AT5G04225.1	long_noncoding_rna			None;(source:Araport11)
AT1G16710.10	protein_coding		Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates.  No  single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides,  suggesting that HAC12 can acetylate any  of several lysines present in the peptides.	histone acetyltransferase of the CBP family 12;(source:Araport11)
AT5G14410.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G43850.3	protein_coding			Integrin-linked protein kinase family;(source:Araport11)
AT4G13040.5	protein_coding		Encodes a member of the AP2/EREBP transcription factor family that has only one AP2 domain. It is a positive regulator of disease defense that functions upstream of SA accumulation.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G13040.4	protein_coding		Encodes a member of the AP2/EREBP transcription factor family that has only one AP2 domain. It is a positive regulator of disease defense that functions upstream of SA accumulation.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G13040.7	protein_coding		Encodes a member of the AP2/EREBP transcription factor family that has only one AP2 domain. It is a positive regulator of disease defense that functions upstream of SA accumulation.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G13040.6	protein_coding		Encodes a member of the AP2/EREBP transcription factor family that has only one AP2 domain. It is a positive regulator of disease defense that functions upstream of SA accumulation.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G28810.2	protein_coding			mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216);(source:Araport11)
AT3G45280.3	protein_coding		syntaxin of plants 72 (SYP72)	syntaxin of plants 72;(source:Araport11)
AT3G45280.2	protein_coding		syntaxin of plants 72 (SYP72)	syntaxin of plants 72;(source:Araport11)
AT1G78410.2	protein_coding			VQ motif-containing protein;(source:Araport11)
AT1G34750.3	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT2G08985.1	long_noncoding_rna			None;(source:Araport11)
AT3G07735.1	small_nucleolar_rna			None;(source:Araport11)
AT5G39380.3	protein_coding			Plant calmodulin-binding protein-like protein;(source:Araport11)
AT5G39380.2	protein_coding			Plant calmodulin-binding protein-like protein;(source:Araport11)
AT5G02095.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G13510;(source:Araport11)
AT3G03805.1	long_noncoding_rna			None;(source:Araport11)
AT1G04687.1	long_noncoding_rna			None;(source:Araport11)
AT5G39380.5	protein_coding			Plant calmodulin-binding protein-like protein;(source:Araport11)
AT5G39380.4	protein_coding			Plant calmodulin-binding protein-like protein;(source:Araport11)
AT3G06005.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT4G03335.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G06525.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G15910;(source:Araport11)
AT4G07250.1	long_noncoding_rna			None;(source:Araport11)
AT1G04570.2	protein_coding		Similar to plastid solute transporters.	Major facilitator superfamily protein;(source:Araport11)
AT1G73370.3	protein_coding		Encodes a protein with sucrose synthase activity (SUS6).	sucrose synthase 6;(source:Araport11)
AT5G48790.2	protein_coding			LOW PSII ACCUMULATION protein (DUF1995);(source:Araport11)
AT1G34750.2	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G64260.2	protein_coding			MuDR family transposase;(source:Araport11)
AT4G07105.1	long_noncoding_rna			None;(source:Araport11)
AT1G03290.3	protein_coding			ELKS/Rab6-interacting/CAST family protein;(source:Araport11)
AT1G03290.4	protein_coding			ELKS/Rab6-interacting/CAST family protein;(source:Araport11)
AT1G03290.5	protein_coding			ELKS/Rab6-interacting/CAST family protein;(source:Araport11)
AT1G03290.6	protein_coding			ELKS/Rab6-interacting/CAST family protein;(source:Araport11)
AT2G18180.4	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G21050.2	protein_coding			MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT5G64816.3	protein_coding		Thionin-like gene.	thionin-like protein;(source:Araport11)
AT1G08433.1	long_noncoding_rna			None;(source:Araport11)
AT4G22545.4	pseudogene			None;(source:Araport11)
AT3G57380.2	protein_coding			Glycosyltransferase family 61 protein;(source:Araport11)
AT5G01180.2	protein_coding		Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane.	peptide transporter 5;(source:Araport11)
AT5G01180.3	protein_coding		Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane.	peptide transporter 5;(source:Araport11)
AT4G22545.3	pseudogene			None;(source:Araport11)
AT4G22545.2	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT5G48440.3	protein_coding			FAD-dependent oxidoreductase family protein;(source:Araport11)
AT2G40860.3	protein_coding			protein kinase family protein / protein phosphatase 2C ( PP2C) family protein;(source:Araport11)
AT1G04437.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G05840;(source:Araport11)
AT2G40860.4	protein_coding			protein kinase family protein / protein phosphatase 2C ( PP2C) family protein;(source:Araport11)
AT2G18950.2	protein_coding		Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading.	homogentisate phytyltransferase 1;(source:Araport11)
AT5G07360.3	protein_coding			Amidase family protein;(source:Araport11)
AT1G78960.5	protein_coding		Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.	lupeol synthase 2;(source:Araport11)
AT1G05723.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G22170;(source:Araport11)
AT4G36020.2	protein_coding		Encodes a cold shock domain protein. Involved in cold acclimation by blocking the secondary structure of mRNA which in turn facilitates translation at cold temperature.	cold shock domain protein 1;(source:Araport11)
AT4G31685.1	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT4G25570.2	protein_coding		Encodes cytochrome b561.	Cytochrome b561/ferric reductase transmembrane protein family;(source:Araport11)
AT5G16770.3	protein_coding		Member of the R2R3 factor gene family.	myb domain protein 9;(source:Araport11)
AT3G30340.2	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G06065.1	long_noncoding_rna			None;(source:Araport11)
AT4G20050.6	protein_coding		Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.	Pectin lyase-like superfamily protein;(source:Araport11)
AT4G20050.7	protein_coding		Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.	Pectin lyase-like superfamily protein;(source:Araport11)
AT3G08330.1	long_noncoding_rna			None;(source:Araport11)
AT3G06065.1	long_noncoding_rna			None;(source:Araport11)
AT1G20810.2	protein_coding			FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT5G28290.3	protein_coding		Encodes AtNek3, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 3;(source:Araport11)
AT5G37793.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G31050.7	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G20310.7	protein_coding		Encodes a Golgi-localized protease that can cleave the  transcription factors bZIP17 and bZIP28 that are translocated from the ER through the Golgi so that the transcription factors can be released to translocate into the nucleus.	Peptidase M50 family protein;(source:Araport11)
AT4G20310.6	protein_coding		Encodes a Golgi-localized protease that can cleave the  transcription factors bZIP17 and bZIP28 that are translocated from the ER through the Golgi so that the transcription factors can be released to translocate into the nucleus.	Peptidase M50 family protein;(source:Araport11)
AT4G20310.5	protein_coding		Encodes a Golgi-localized protease that can cleave the  transcription factors bZIP17 and bZIP28 that are translocated from the ER through the Golgi so that the transcription factors can be released to translocate into the nucleus.	Peptidase M50 family protein;(source:Araport11)
AT4G20310.4	protein_coding		Encodes a Golgi-localized protease that can cleave the  transcription factors bZIP17 and bZIP28 that are translocated from the ER through the Golgi so that the transcription factors can be released to translocate into the nucleus.	Peptidase M50 family protein;(source:Araport11)
AT3G27860.2	protein_coding			Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT4G20310.9	protein_coding		Encodes a Golgi-localized protease that can cleave the  transcription factors bZIP17 and bZIP28 that are translocated from the ER through the Golgi so that the transcription factors can be released to translocate into the nucleus.	Peptidase M50 family protein;(source:Araport11)
AT4G20310.8	protein_coding		Encodes a Golgi-localized protease that can cleave the  transcription factors bZIP17 and bZIP28 that are translocated from the ER through the Golgi so that the transcription factors can be released to translocate into the nucleus.	Peptidase M50 family protein;(source:Araport11)
AT1G31050.5	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G51540.3	protein_coding			mucin-5AC-like protein;(source:Araport11)
AT5G40760.2	protein_coding		Encodes a cytosolic glucose-6-phosphate dehydrogenase that is insensitive to reduction by DTT and whose mRNA is expressed ubiquitously.The mRNA is cell-to-cell mobile.	glucose-6-phosphate dehydrogenase 6;(source:Araport11)
AT2G47600.uORF1-1	uORF			Derives_from AT2G47600;(source:Araport11)
AT2G47600.uORF1-2	uORF			Derives_from AT2G47600;(source:Araport11)
AT3G16690.3	protein_coding			Nodulin MtN3 family protein;(source:Araport11)
AT2G23950.2	protein_coding		Encodes an LLR receptor kinase that is expressed in protophloem and is required for CLE peptide sensing in roots. One of a group of LRR-RLKs, designated as CLAVATA3 INSENSITIVE RECEPTOR KINASES (CIKs), that acts as a co-regulator and has essential roles in regulating CLV3-mediated stem cell homeostasis.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G42950.2	protein_coding			Magnesium transporter CorA-like family protein;(source:Araport11)
AT2G03720.2	protein_coding		Involved in root hair development	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G09240.3	protein_coding			kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT1G59980.3	protein_coding			ARG1-like 2;(source:Araport11)
AT1G10890.4	protein_coding			arginine/glutamate-rich 1 protein;(source:Araport11)
AT1G10890.2	protein_coding			arginine/glutamate-rich 1 protein;(source:Araport11)
AT1G10890.3	protein_coding			arginine/glutamate-rich 1 protein;(source:Araport11)
AT5G09380.2	protein_coding			RNA polymerase III RPC4;(source:Araport11)
AT5G09380.3	protein_coding			RNA polymerase III RPC4;(source:Araport11)
AT2G05145.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G07749;(source:Araport11)
AT2G09245.1	long_noncoding_rna			None;(source:Araport11)
AT3G07170.2	protein_coding			Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G06100.3	protein_coding		Encodes NIP7;1, an anther-specific boric acid transporter of the aquaporin superfamily regulated by an unusual tyrosine in helix 2 of the transport pore.	NOD26-like intrinsic protein 7;(source:Araport11)
AT1G23520.3	protein_coding			hypothetical protein (DUF220);(source:Araport11)
AT1G04443.1	long_noncoding_rna			None;(source:Araport11)
AT4G39270.9	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G27090.2	protein_coding			bZIP transcription factor (DUF630 and DUF632);(source:Araport11)
AT4G08435.1	long_noncoding_rna			None;(source:Araport11)
AT3G10490.3	protein_coding		Encodes a NAC transcription factor that physically associates with the histone H3K4 demethylase JMJ14 and through that association is involved in transcriptional repression and flowering time control.	NAC domain containing protein 52;(source:Araport11)
AT5G42220.2	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT1G05707.1	long_noncoding_rna			None;(source:Araport11)
AT1G06607.1	long_noncoding_rna			None;(source:Araport11)
AT3G07160.3	protein_coding		Encodes GSL10, a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose.  GSL10 is required for male gametophyte development and plant growth.  Has a role in entry of microspores into mitosis.  GSL10 mutation leads to perturbation of microspore division symmetry, irregular callose deposition and failure of generative cell engulfment by the vegetative cell cytoplasm.  Also refer to GSL8 (At2g36850).	glucan synthase-like 10;(source:Araport11)
AT4G05405.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G08330;(source:Araport11)
AT1G61430.13	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT2G18120.2	protein_coding		A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	SHI-related sequence 4;(source:Araport11)
AT3G02940.2	protein_coding		Encodes a putative transcription factor (MYB107).	myb domain protein 107;(source:Araport11)
AT2G36810.3	protein_coding		Specifically involved in gravity perception and/or gravity signal transduction for the shoot gravitropic response. Effects gravitropism only in inflorescence stems but normal in both hypocotyls and roots.	ARM repeat superfamily protein;(source:Araport11)
AT2G36810.2	protein_coding		Specifically involved in gravity perception and/or gravity signal transduction for the shoot gravitropic response. Effects gravitropism only in inflorescence stems but normal in both hypocotyls and roots.	ARM repeat superfamily protein;(source:Araport11)
AT5G00790.1	long_noncoding_rna			None;(source:Araport11)
AT1G07757.1	antisense_rna			Natural antisense transcript overlaps with AT1G51590;(source:Araport11)
AT1G70100.6	protein_coding			neurofilament heavy protein;(source:Araport11)
AT1G70100.5	protein_coding			neurofilament heavy protein;(source:Araport11)
AT1G60670.4	protein_coding			hypothetical protein (DUF3755);(source:Araport11)
AT4G19990.7	protein_coding			FAR1-related sequence 1;(source:Araport11)
AT1G31050.8	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G28760.4	protein_coding			UDP-XYL synthase 6;(source:Araport11)
AT5G03785.1	long_noncoding_rna			None;(source:Araport11)
AT3G03825.1	long_noncoding_rna			None;(source:Araport11)
AT4G22110.3	protein_coding			GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT4G20350.9	protein_coding			oxidoreductase;(source:Araport11)
AT5G04937.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G21755.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G21760;(source:Araport11)
AT4G39270.6	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G00500.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09843.1	antisense_rna			Natural antisense transcript overlaps with AT1G79050;(source:Araport11)
AT3G07255.1	protein_coding			nuclear transport factor 2/RNA recognition motif protein;(source:Araport11)
AT5G64480.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G07235.1	long_noncoding_rna			None;(source:Araport11)
AT2G31470.2	protein_coding		Encodes a F-Box protein DOR (Drought tolerance Repressor) functionally as an inhibitory factor for abscisic acid-induced stomatal closure under drought stress.	F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G39270.4	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G00900.2	protein_coding		Type IIA (SERCA-type) Ca2+ ATPase, catalyzes the efflux of calcium from the cytoplasm.	ER-type Ca2+-ATPase 2;(source:Araport11)
AT5G55390.3	protein_coding		Encodes EDM2 (enhanced downy mildew 2).  The predicted protein bears typical features of transcriptional regulators.  EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region.  Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif.  Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1).  EDM2 may function as a direct or indirect regulator of RPP7 expression.	ENHANCED DOWNY MILDEW 2;(source:Araport11)
AT1G61800.2	protein_coding		glucose6-Phosphate/phosphate transporter 2. Expression is upregulated in the shoot of cax1/cax3 mutant.The mRNA is cell-to-cell mobile.	glucose-6-phosphate/phosphate translocator 2;(source:Araport11)
AT4G08093.5	pseudogene			pseudogene of dihydroorotate dehydrogenase;(source:Araport11)
AT4G08093.4	pseudogene			pseudogene of dihydroorotate dehydrogenase;(source:Araport11)
AT4G35270.4	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT3G07275.1	long_noncoding_rna			None;(source:Araport11)
AT4G35270.3	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT4G08093.3	pseudogene			pseudogene of dihydroorotate dehydrogenase;(source:Araport11)
AT4G08093.2	pseudogene			pseudogene of dihydroorotate dehydrogenase;(source:Araport11)
AT2G08765.1	small_nucleolar_rna			None;(source:Araport11)
AT4G20350.3	protein_coding			oxidoreductase;(source:Araport11)
AT2G09455.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G43350;(source:Araport11)
AT5G24170.2	protein_coding			Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT1G76040.3	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 29;(source:Araport11)
AT2G35510.2	protein_coding		Encodes a WWE domain-containing protein with 76% similarity to RCD1.  The protein also contains a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule.  Its presence suggests a role for the protein in ADP ribosylation.	similar to RCD one 1;(source:Araport11)
AT2G07680.6	protein_coding		Encodes ABCC13/MRP11, a member of the multidrug resistance associated protein MRP/ABCC subfamily. Its expression is induced by gibberellic acid and downregulated by naphthalene acetic acid, abscisic acid, and zeatin.	multidrug resistance-associated protein 11;(source:Araport11)
AT3G08300.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52860;(source:Araport11)
AT2G44580.2	protein_coding			zinc ion binding protein;(source:Araport11)
AT3G01510.2	protein_coding		Encodes a putative phosphatase, LSF1, required for normal starch turnover in leaves.	like SEX4 1;(source:Araport11)
AT5G09690.10	protein_coding		Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT4G03820.3	protein_coding			transmembrane protein, putative (DUF3537);(source:Araport11)
AT5G05755.1	long_noncoding_rna			None;(source:Araport11)
AT5G16120.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G09685.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G66720;(source:Araport11)
AT2G03140.9	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G03140.8	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G03140.7	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G46110.3	protein_coding		DUF966 domain containing protein, expressed during embryogenesis.	UPSTREAM OF FLC-like protein (DUF966);(source:Araport11)
AT2G03140.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G03140.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G03140.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G34020.3	protein_coding			Nucleotide-sugar transporter family protein;(source:Araport11)
AT1G06593.1	long_noncoding_rna			None;(source:Araport11)
AT4G15765.4	protein_coding			FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT1G03980.4	protein_coding		Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1, explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).	phytochelatin synthase 2;(source:Araport11)
AT3G15354.5	protein_coding		Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain.  SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants.	SPA1-related 3;(source:Araport11)
AT1G45050.2	protein_coding		member of ubiquitin-conjugating E2-proteins	Ubiquitin-conjugating enzyme family protein;(source:Araport11)
AT1G75125.1	protein_coding			plastid transcriptionally active protein;(source:Araport11)
AT1G03980.2	protein_coding		Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1, explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).	phytochelatin synthase 2;(source:Araport11)
AT1G03980.3	protein_coding		Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1, explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).	phytochelatin synthase 2;(source:Araport11)
AT5G04510.3	protein_coding		Encodes 3-phosphoinositide-dependent protein kinase that contains pleckstrin homology domain and binds 3-phosphoinositides.  It activates the protein kinase AGC2-1 in a phosphatidic acid dependent manner. Phosphorylates S6K1. Interacts with PID, and   transphosphorylation by PDK1 increases PID autophosphorylation.The mRNA is cell-to-cell mobile.	3-phosphoinositide-dependent protein kinase 1;(source:Araport11)
AT5G08815.1	long_noncoding_rna			None;(source:Araport11)
AT1G31860.2	protein_coding		encodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities.	histidine biosynthesis bifunctional protein (HISIE);(source:Araport11)
AT2G28150.2	protein_coding		DUF966 domain containing protein, expressed during embryogenesis.	UPSTREAM OF FLC protein (DUF966);(source:Araport11)
AT4G08625.1	small_nucleolar_rna			None;(source:Araport11)
AT1G54930.2	protein_coding			GRF zinc finger / Zinc knuckle protein;(source:Araport11)
AT1G06577.1	long_noncoding_rna			None;(source:Araport11)
AT1G14350.3	protein_coding		Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells.  This phenotype is enhanced in double mutants with MYB88. Its transcript levels change after inducing MUTE expression in a mute background. Also regulates female reproductive development.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT5G26180.5	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G29280.2	pseudogene			pseudogene of tropinone reductase;(source:Araport11)
AT4G20707.1	protein_coding			receptor-like kinase;(source:Araport11)
AT5G56260.2	protein_coding			Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase;(source:Araport11)
AT1G09023.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G68940;(source:Araport11)
AT1G05947.1	long_noncoding_rna			None;(source:Araport11)
AT1G09023.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G68940;(source:Araport11)
AT3G08765.1	long_noncoding_rna			None;(source:Araport11)
AT1G09023.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G68940;(source:Araport11)
AT1G09023.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G68940;(source:Araport11)
AT1G68140.4	protein_coding			zinc finger/BTB domain protein, putative (DUF1644);(source:Araport11)
AT3G02575.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G12650;(source:Araport11)
AT5G66810.2	protein_coding			Ran-binding protein in the microtubule-organising centre protein;(source:Araport11)
AT1G18750.3	protein_coding		Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.	AGAMOUS-like 65;(source:Araport11)
AT3G46330.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G18750.4	protein_coding		Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.	AGAMOUS-like 65;(source:Araport11)
AT1G55945.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G35140.6	protein_coding			DCD (Development and Cell Death) domain protein;(source:Araport11)
AT2G35140.4	protein_coding			DCD (Development and Cell Death) domain protein;(source:Araport11)
AT2G35140.5	protein_coding			DCD (Development and Cell Death) domain protein;(source:Araport11)
AT4G09770.5	protein_coding			TRAF-like family protein;(source:Araport11)
AT3G52050.7	protein_coding			5-3 exonuclease family protein;(source:Araport11)
AT5G26180.4	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G37970.4	protein_coding			cinnamyl alcohol dehydrogenase 6;(source:Araport11)
AT4G37970.3	protein_coding			cinnamyl alcohol dehydrogenase 6;(source:Araport11)
AT1G08303.1	miRNA_primary_transcript			microRNA ath-MIR774b precursor;(source:Araport11)
AT1G78320.2	protein_coding		Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase TAU 23;(source:Araport11)
AT2G30580.3	protein_coding		Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.	DREB2A-interacting protein 2;(source:Araport11)
AT2G30580.2	protein_coding		Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.	DREB2A-interacting protein 2;(source:Araport11)
AT2G34390.4	protein_coding		aquaporin NIP2.1	NOD26-like intrinsic protein 2;(source:Araport11)
AT3G01050.3	protein_coding			membrane-anchored ubiquitin-fold protein 1 precursor;(source:Araport11)
AT4G05970.1	long_noncoding_rna			None;(source:Araport11)
AT3G07420.2	protein_coding		Encodes an asparaginyl-tRNA synthetase.	asparaginyl-tRNA synthetase 2;(source:Araport11)
AT1G30757.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G37910.2	protein_coding			mitochondrial heat shock protein 70-1;(source:Araport11)
AT3G11950.3	protein_coding		publications Tian et al (2007) and Sadre et al (2006) refer to At3g11950. The prenyltransferase gene studied is actually At3g11945 which arises from a split of the previous At3g11950 gene model.	TRAF-like superfamily protein;(source:Araport11)
AT5G44563.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G11950.4	protein_coding		publications Tian et al (2007) and Sadre et al (2006) refer to At3g11950. The prenyltransferase gene studied is actually At3g11945 which arises from a split of the previous At3g11950 gene model.	TRAF-like superfamily protein;(source:Araport11)
AT3G11950.5	protein_coding		publications Tian et al (2007) and Sadre et al (2006) refer to At3g11950. The prenyltransferase gene studied is actually At3g11945 which arises from a split of the previous At3g11950 gene model.	TRAF-like superfamily protein;(source:Araport11)
AT3G53880.2	protein_coding			NAD(P)-linked oxidoreductase superfamily protein;(source:Araport11)
AT1G34320.2	protein_coding			Ikzf5 (DUF668);(source:Araport11)
AT3G18500.4	protein_coding		Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT1G06567.1	long_noncoding_rna			None;(source:Araport11)
AT5G08255.1	miRNA_primary_transcript			microRNA ath-MIR2938 precursor;(source:Araport11)
AT5G52320.2	protein_coding			cytochrome P450, family 96, subfamily A, polypeptide 4;(source:Araport11)
AT1G48780.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G34020.2	protein_coding			Nucleotide-sugar transporter family protein;(source:Araport11)
AT3G02755.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G13770;(source:Araport11)
AT5G58940.2	protein_coding		Arabidopsis thaliana calmodulin-binding receptor-like kinase mRNAThe mRNA is cell-to-cell mobile.	calmodulin-binding receptor-like cytoplasmic kinase 1;(source:Araport11)
AT5G51410.5	protein_coding			LUC7 N terminus domain-containing protein;(source:Araport11)
AT5G12170.3	protein_coding		Encodes one of the CRT-Like transporters (CLT1/AT5G19380, CLT2/AT4G24460, CLT3/AT5G12170). Required for glutathione homeostasis and stress responses.  Mutants lacking these transporters are heavy metal-sensitive, glutathione(GSH)-deficient, and hypersensitive to Phytophthora infection.The mRNA is cell-to-cell mobile.	CRT (chloroquine-resistance transporter)-like transporter 3;(source:Araport11)
AT3G13580.4	protein_coding			Ribosomal protein L30/L7 family protein;(source:Araport11)
AT5G56370.3	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT3G05265.1	long_noncoding_rna			None;(source:Araport11)
AT3G09315.1	long_noncoding_rna			None;(source:Araport11)
AT3G05555.1	long_noncoding_rna			None;(source:Araport11)
AT5G66558.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G66560;(source:Araport11)
AT5G66558.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G66560;(source:Araport11)
AT1G07977.1	other_rna			None;(source:Araport11)
AT5G07840.uORF1	uORF			Derives_from AT5G07840;(source:Araport11)
AT5G02745.1	long_noncoding_rna			None;(source:Araport11)
AT5G02105.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G13840;(source:Araport11)
AT1G68580.3	protein_coding			Agenet and bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT5G04065.1	long_noncoding_rna			None;(source:Araport11)
AT3G16710.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G68580.5	protein_coding			Agenet and bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT1G68580.4	protein_coding			Agenet and bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT2G27490.3	protein_coding		AT2G27490 encodes dephospho-CoA kinase. The molecular function was shown to phosphorylate the ribosyl moiety forming CoA.	dephospho-CoA kinase family;(source:Araport11)
AT4G09140.2	protein_coding		Encodes a protein with similarity to Mut1 DNA mismatch repair protein, from E.coli. The protein is expressed during prophase I of meiosis, colocalizes with MLH3 throughout pachytene and is dependent on MLH3 for proper localization. Mutant analyses suggest that MLH1 promotes mitotic recombination but inhibits recombintation between homeologous sequences.	MUTL-homologue 1;(source:Araport11)
AT2G05125.1	long_noncoding_rna			None;(source:Araport11)
AT2G26000.3	protein_coding		Encodes a RING domain containing protein BRIZ2. BRIZ1 (At2g42160) and BRIZ2 (At2g26000) proteins form a heteromeric E3 ligase complex required for seed germination and post-germination growth.	zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT1G32950.2	protein_coding			Subtilase family protein;(source:Araport11)
AT2G27490.4	protein_coding		AT2G27490 encodes dephospho-CoA kinase. The molecular function was shown to phosphorylate the ribosyl moiety forming CoA.	dephospho-CoA kinase family;(source:Araport11)
AT1G22170.2	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT3G04020.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G08295.1	long_noncoding_rna			None;(source:Araport11)
AT3G08845.1	long_noncoding_rna			None;(source:Araport11)
AT4G00990.3	protein_coding		jJumonji-domain-containing H3K9 histone demethylase. Loss of function mutants are susceptible to bacterial infection and early flowering.	Transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT2G42835.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42830;(source:Araport11)
AT3G09865.1	small_nucleolar_rna			None;(source:Araport11)
AT1G32940.4	protein_coding			Subtilase family protein;(source:Araport11)
AT2G09365.1	other_rna			None;(source:Araport11)
AT2G20860.3	protein_coding		LIP1,Lipoic acid synthase,	lipoic acid synthase 1;(source:Araport11)
AT2G20860.2	protein_coding		LIP1,Lipoic acid synthase,	lipoic acid synthase 1;(source:Araport11)
AT1G32940.2	protein_coding			Subtilase family protein;(source:Araport11)
AT1G32940.3	protein_coding			Subtilase family protein;(source:Araport11)
AT3G61570.2	protein_coding		This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast.  A fluorescently-tagged version of GC3 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (161 aa) portion of the protein.	GRIP-related ARF-binding domain-containing protein 1;(source:Araport11)
AT3G02815.1	long_noncoding_rna			None;(source:Araport11)
AT1G12280.2	protein_coding		Encodes a NB-LRR protein SUMM2 involved in defense response to bacterium.	LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT2G08460.1	long_noncoding_rna			None;(source:Araport11)
AT5G15940.3	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT4G33530.2	protein_coding		potassium transporter	K+ uptake permease 5;(source:Araport11)
AT2G26770.3	protein_coding		Encodes a plant-specific actin binding protein SCAB1 (STOMATAL CLOSURE-RELATED ACTIN BINDING PROTEIN1).  SCAB1 stabilizes actin filaments and regulates stomatal movement.	plectin-like protein;(source:Araport11)
AT5G15940.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G50460.3	protein_coding		Involved in glucose-ethylene crosstalk.	hexokinase-like 1;(source:Araport11)
AT1G50460.2	protein_coding		Involved in glucose-ethylene crosstalk.	hexokinase-like 1;(source:Araport11)
AT5G02585.1	novel_transcribed_region			novel transcribed region; detected in root, root apical meristem, dark-grown seedling;(source:Araport11)
AT2G17442.8	protein_coding			hypothetical protein;(source:Araport11)
AT1G07323.1	long_noncoding_rna			None;(source:Araport11)
AT3G08120.1	long_noncoding_rna			None;(source:Araport11)
AT5G38865.4	protein_coding			hypothetical protein;(source:Araport11)
AT2G17442.7	protein_coding			hypothetical protein;(source:Araport11)
AT3G07600.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT2G04170.7	protein_coding			TRAF-like family protein;(source:Araport11)
AT2G04170.6	protein_coding			TRAF-like family protein;(source:Araport11)
AT2G28580.4	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT2G28580.5	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT3G05495.1	long_noncoding_rna			None;(source:Araport11)
AT2G34780.4	protein_coding		Encodes a novel protein of unknown function that is essential for embryonic development. Severe loss of function alleles are embryo lethal. Analysis  of a partial loss of function allele indicates a role for EMB1611 in regulation of endoreduplication and maintenance of meristem cell fate. It appears to be required for maintaining the CLV-WUS regulatory pathway.	maternal effect embryo arrest 22;(source:Araport11)
AT2G34780.3	protein_coding		Encodes a novel protein of unknown function that is essential for embryonic development. Severe loss of function alleles are embryo lethal. Analysis  of a partial loss of function allele indicates a role for EMB1611 in regulation of endoreduplication and maintenance of meristem cell fate. It appears to be required for maintaining the CLV-WUS regulatory pathway.	maternal effect embryo arrest 22;(source:Araport11)
AT1G29330.2	protein_coding		Encodes a protein similar in sequence to animal and yeast endoplasmic reticulum retention signal receptor. This protein can functionally complement the yeast homologue. Transcript is detected in flower buds, stems, root, and leaves.	ER lumen protein retaining receptor family protein;(source:Araport11)
AT2G28580.2	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT2G28580.3	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT5G61430.2	protein_coding			NAC domain containing protein 100;(source:Araport11)
AT4G24480.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G07170.1	long_noncoding_rna			None;(source:Araport11)
AT5G47060.2	protein_coding			hypothetical protein (DUF581);(source:Araport11)
AT4G37900.2	protein_coding		Protein of unknown function that contains DUF1399 domain and putative RNA binding motif. Expressed in many plant tissues and is involved in many aspects of plant growth and development as well as response to salt stress.	hypothetical protein (duplicated DUF1399);(source:Araport11)
AT3G01895.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G06780;(source:Araport11)
AT5G40440.4	protein_coding		Encodes a mitogen-activated protein kinase kinase.  Activates MPK8 and is a target of MPKKK20. Mutant root growth is sensitive oryzalin and suggestive of a role in signaling during microtubule organization.	mitogen-activated protein kinase kinase 3;(source:Araport11)
AT2G08035.1	miRNA_primary_transcript			microRNA ath-MIR5019 precursor;(source:Araport11)
AT5G38865.5	protein_coding			hypothetical protein;(source:Araport11)
AT1G08747.1	antisense_rna			Natural antisense transcript overlaps with AT1G65230;(source:Araport11)
AT1G19970.2	protein_coding			ER lumen protein retaining receptor family protein;(source:Araport11)
AT1G29320.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G28335.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G50000.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G55570.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G08383.1	long_noncoding_rna			None;(source:Araport11)
AT4G31750.2	protein_coding		Encodes HopW1-1-Interacting protein 2 (WIN2).  Interacts with the P. syringae effector HopW1-1.  WIN2 has protein phosphatase activity.  Modulates plant defenses against bacteria.  Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).	HOPW1-1-interacting 2;(source:Araport11)
AT2G07662.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G22500.uORF1	uORF			Derives_from AT2G22500;(source:Araport11)
AT1G21090.2	protein_coding			Cupredoxin superfamily protein;(source:Araport11)
AT4G38213.1	protein_coding			tubulin-tyrosine ligase;(source:Araport11)
AT5G05255.1	long_noncoding_rna			None;(source:Araport11)
AT1G05937.1	long_noncoding_rna			None;(source:Araport11)
AT5G15720.3	protein_coding		Contains lipase signature motif and GDSL domain.	GDSL-motif lipase 7;(source:Araport11)
AT5G15720.2	protein_coding		Contains lipase signature motif and GDSL domain.	GDSL-motif lipase 7;(source:Araport11)
AT2G28815.1	protein_coding			50S ribosomal protein L16;(source:Araport11)
AT4G06290.1	long_noncoding_rna			None;(source:Araport11)
AT2G07636.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G22020.2	protein_coding			Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT5G22020.3	protein_coding			Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT5G00590.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G50020.3	protein_coding			DHHC-type zinc finger family protein;(source:Araport11)
AT2G24650.5	protein_coding			B3 domain-containing protein REM13;(source:Araport11)
AT4G02690.2	protein_coding		Stress induced membrane protein. Mutants show enhanced cell death under stress.	Bax inhibitor-1 family protein;(source:Araport11)
AT5G51100.2	protein_coding		Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.	Fe superoxide dismutase 2;(source:Araport11)
AT5G05275.1	long_noncoding_rna			None;(source:Araport11)
AT5G51100.6	protein_coding		Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.	Fe superoxide dismutase 2;(source:Araport11)
AT5G51100.5	protein_coding		Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.	Fe superoxide dismutase 2;(source:Araport11)
AT5G51100.4	protein_coding		Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.	Fe superoxide dismutase 2;(source:Araport11)
AT5G50740.5	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G02310.2	protein_coding			Glycosyl hydrolase superfamily protein;(source:Araport11)
AT4G28940.2	protein_coding			Phosphorylase superfamily protein;(source:Araport11)
AT1G79245.3	pseudogene			pseudogene of Winged helix-turn-helix transcription repressor DNA-binding protein;(source:Araport11)
AT1G79245.2	pseudogene			pseudogene of Winged helix-turn-helix transcription repressor DNA-binding protein;(source:Araport11)
AT2G07658.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G18775.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G79245.5	pseudogene			pseudogene of Winged helix-turn-helix transcription repressor DNA-binding protein;(source:Araport11)
AT1G79245.4	pseudogene			pseudogene of Winged helix-turn-helix transcription repressor DNA-binding protein;(source:Araport11)
AT3G02285.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G10150;(source:Araport11)
AT2G09165.1	long_noncoding_rna			None;(source:Araport11)
AT1G31930.4	protein_coding		Encodes XLG3 (extra-large G protein 3) that shows significant similarity to the G protein alpha subunit in its C terminal region.  Involved in the regulation of root morphological and growth responses.	extra-large GTP-binding protein 3;(source:Araport11)
AT1G31930.5	protein_coding		Encodes XLG3 (extra-large G protein 3) that shows significant similarity to the G protein alpha subunit in its C terminal region.  Involved in the regulation of root morphological and growth responses.	extra-large GTP-binding protein 3;(source:Araport11)
AT1G31930.6	protein_coding		Encodes XLG3 (extra-large G protein 3) that shows significant similarity to the G protein alpha subunit in its C terminal region.  Involved in the regulation of root morphological and growth responses.	extra-large GTP-binding protein 3;(source:Araport11)
AT5G27850.2	protein_coding			Ribosomal protein L18e/L15 superfamily protein;(source:Araport11)
AT5G28690.3	protein_coding			carboxylate clamp-TPR protein (DUF1685);(source:Araport11)
AT5G28690.2	protein_coding			carboxylate clamp-TPR protein (DUF1685);(source:Araport11)
AT4G04465.1	small_nucleolar_rna			None;(source:Araport11)
AT4G12030.3	protein_coding		Required for the biosynthesis of methionine-derived glucosinolates. Involved in the  transport of 2-keto acids between chloroplasts and the cytosol.	bile acid transporter 5;(source:Araport11)
AT3G59330.2	protein_coding			solute carrier family 35 protein (DUF914);(source:Araport11)
AT1G06237.1	small_nucleolar_rna			None;(source:Araport11)
AT1G06430.3	protein_coding		encodes a FtsH protease that is localized to the chloroplast	FTSH protease 8;(source:Araport11)
AT1G06430.2	protein_coding		encodes a FtsH protease that is localized to the chloroplast	FTSH protease 8;(source:Araport11)
AT5G44110.4	protein_coding		Encodes a member of the NAP subfamily of ABC transporters whose expression pattern is regulated by light and sucrose.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G12030.4	protein_coding		Required for the biosynthesis of methionine-derived glucosinolates. Involved in the  transport of 2-keto acids between chloroplasts and the cytosol.	bile acid transporter 5;(source:Araport11)
AT5G45330.3	protein_coding			decapping 5-like protein;(source:Araport11)
AT5G45330.2	protein_coding			decapping 5-like protein;(source:Araport11)
AT1G21580.4	protein_coding		Encodes a zinc-finger protein that co-localizes with the exosome-associated RNA helicase HEN2 and functions as a co-factor of nuclear RNA quality control by the nucleoplasmic exosome.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G21580.5	protein_coding		Encodes a zinc-finger protein that co-localizes with the exosome-associated RNA helicase HEN2 and functions as a co-factor of nuclear RNA quality control by the nucleoplasmic exosome.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G66335.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G21580.7	protein_coding		Encodes a zinc-finger protein that co-localizes with the exosome-associated RNA helicase HEN2 and functions as a co-factor of nuclear RNA quality control by the nucleoplasmic exosome.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT3G48260.2	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.	with no lysine (K) kinase 3;(source:Araport11)
AT1G21580.9	protein_coding		Encodes a zinc-finger protein that co-localizes with the exosome-associated RNA helicase HEN2 and functions as a co-factor of nuclear RNA quality control by the nucleoplasmic exosome.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G28680.2	protein_coding		Receptor-like kinase required  for maintenance of pollen tube growth. Display polar localization at  the plasma membrane of the pollen tube tip.	Malectin/receptor-like protein kinase family protein;(source:Araport11)
AT1G05853.1	small_nuclear_rna			U5;(source:Araport11)
AT4G04750.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G63580.2	protein_coding		encodes a protein whose sequence is similar to flavonol synthase	flavonol synthase 2;(source:Araport11)
AT3G07310.2	protein_coding			phosphoserine aminotransferase, putative (DUF760);(source:Araport11)
AT3G10200.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G09785.1	long_noncoding_rna			None;(source:Araport11)
AT3G08115.1	long_noncoding_rna			None;(source:Araport11)
AT5G35100.3	protein_coding			Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G07320.2	pseudogene			pseudogene of myosin heavy chain-like protein;(source:Araport11)
AT4G08450.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G49700.3	protein_coding			Plant protein 1589 of unknown function;(source:Araport11)
AT1G49700.4	protein_coding			Plant protein 1589 of unknown function;(source:Araport11)
AT5G00575.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03130.4	protein_coding			BRCT domain-containing DNA repair protein;(source:Araport11)
AT4G07300.1	long_noncoding_rna			None;(source:Araport11)
AT3G01645.1	long_noncoding_rna			None;(source:Araport11)
AT1G61640.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G20090.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G05703.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G22050;(source:Araport11)
AT2G01045.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G00630.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G44560.3	protein_coding			fatty acid reductase 8;(source:Araport11)
AT5G10350.6	protein_coding		Encodes a nuclear-localized RNA recognition motif-containing protein that forms homodimers.  It interacts with telomere and non-telomere associated proteins. Null mutation does not result in changes in telomerase activity or telomere length.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G27185.1	protein_coding			cyclin B1;(source:Araport11)
AT5G00835.1	long_noncoding_rna			None;(source:Araport11)
AT1G69100.2	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G03050.2	protein_coding			knotted 1-binding protein;(source:Araport11)
AT2G05835.1	long_noncoding_rna			None;(source:Araport11)
AT2G17780.5	protein_coding		Encodes a mechanosensitive channel candidate MCA2. The three-dimensional structure of MCA2 was reconstructed and appears to comprise a small transmembrane region and large cytoplasmic region.	PLAC8 family protein;(source:Araport11)
AT2G17780.6	protein_coding		Encodes a mechanosensitive channel candidate MCA2. The three-dimensional structure of MCA2 was reconstructed and appears to comprise a small transmembrane region and large cytoplasmic region.	PLAC8 family protein;(source:Araport11)
AT2G17780.7	protein_coding		Encodes a mechanosensitive channel candidate MCA2. The three-dimensional structure of MCA2 was reconstructed and appears to comprise a small transmembrane region and large cytoplasmic region.	PLAC8 family protein;(source:Araport11)
AT2G47240.4	protein_coding			AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT4G01130.3	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G61740.3	protein_coding			ABC2 homolog 14;(source:Araport11)
AT2G15730.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G15730.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G52450.2	protein_coding			Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT1G64510.2	protein_coding			Translation elongation factor EF1B/ribosomal protein S6 family protein;(source:Araport11)
AT2G00630.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09327.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G72600;(source:Araport11)
AT2G35510.3	protein_coding		Encodes a WWE domain-containing protein with 76% similarity to RCD1.  The protein also contains a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule.  Its presence suggests a role for the protein in ADP ribosylation.	similar to RCD one 1;(source:Araport11)
AT4G12440.3	protein_coding			adenine phosphoribosyl transferase 4;(source:Araport11)
AT3G21810.2	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT2G24070.3	protein_coding			QWRF motif protein (DUF566);(source:Araport11)
AT4G12440.4	protein_coding			adenine phosphoribosyl transferase 4;(source:Araport11)
AT4G30150.2	protein_coding			Urb2/Npa2 family protein;(source:Araport11)
AT5G00755.1	small_nucleolar_rna			None;(source:Araport11)
AT5G56960.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding family protein;(source:Araport11)
AT5G56380.2	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT1G07957.1	small_nucleolar_rna			None;(source:Araport11)
AT2G23610.2	protein_coding		Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on methyl salicylate, MeGA4, or MEGA9 in vitro.	methyl esterase 3;(source:Araport11)
AT2G00350.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G01865.1	long_noncoding_rna			None;(source:Araport11)
AT5G06275.1	long_noncoding_rna			None;(source:Araport11)
AT3G02595.1	long_noncoding_rna			None;(source:Araport11)
AT5G07555.1	long_noncoding_rna			None;(source:Araport11)
AT1G06993.1	long_noncoding_rna			None;(source:Araport11)
AT4G08775.1	long_noncoding_rna			None;(source:Araport11)
AT1G35320.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G48540.3	protein_coding			Outer arm dynein light chain 1 protein;(source:Araport11)
AT5G17070.2	protein_coding		Encodes a PP4R2 domain protein that likely functions as a regulatory subunit of PP4, a highly conserved ser/thr protein phosphatase.	serine/threonine-protein phosphatase 4 regulatory subunit-like protein;(source:Araport11)
AT2G30920.2	protein_coding		The enzyme encoded by this gene has been shown to complement the Saccharomyces cerevisiae coq3 mutation and, therefore, to have hexaprenyldihydroxybenzoate methyltransferase activity.  It is however likely that, in Arabidopsis, the enzyme catalyzes the methylation of nonaprenyldihydroxybenzoate as it is the prevalent polyprenoid in this plant species. The enzyme is a mitochondrial-localized methyltransferase involved in ubiquinone biosynthesis.	coenzyme Q 3;(source:Araport11)
AT1G35320.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G48030.3	protein_coding		Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light.	mitochondrial lipoamide dehydrogenase 1;(source:Araport11)
AT2G00340.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G47950.2	protein_coding			myelin transcription factor-like protein;(source:Araport11)
AT3G08965.1	long_noncoding_rna			None;(source:Araport11)
AT5G07380.6	protein_coding			hypothetical protein;(source:Araport11)
AT2G23140.3	protein_coding		PUB4 encodes a functional ubiquitin-protein ligase. The gene is expressed in most plant tissues and the protein localizes to the nucleus. PUB4 has been recovered as a second site suppressor from several different genetic screens and from these, it has been inferred to have  roles in regulating  root development, pollen tapetum development and ROS induced chloroplast degredation.	RING/U-box superfamily protein with ARM repeat domain-containing protein;(source:Araport11)
AT4G03230.8	protein_coding			G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT4G00295.1	protein_coding			fringe-like protein;(source:Araport11)
AT2G23140.4	protein_coding		PUB4 encodes a functional ubiquitin-protein ligase. The gene is expressed in most plant tissues and the protein localizes to the nucleus. PUB4 has been recovered as a second site suppressor from several different genetic screens and from these, it has been inferred to have  roles in regulating  root development, pollen tapetum development and ROS induced chloroplast degredation.	RING/U-box superfamily protein with ARM repeat domain-containing protein;(source:Araport11)
AT1G50120.2	protein_coding		Encodes a Golgi-localized protein which regulates pollen tube growth. Required for TGN formation and Golgi structure maintenance.	immunoglobulin;(source:Araport11)
AT1G22640.2	protein_coding		MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expression	myb domain protein 3;(source:Araport11)
AT2G08400.1	long_noncoding_rna			None;(source:Araport11)
AT3G24080.3	protein_coding			KRR1 family protein;(source:Araport11)
AT1G51270.8	protein_coding			vesicle-associated protein 1-4;(source:Araport11)
AT1G04527.1	small_nucleolar_rna			None;(source:Araport11)
AT4G38200.2	protein_coding		Encodes one of the functionally redundant ARF guanine-nucleotide exchange factors (ARF-GEFs). Functions as regulators of post-Golgi trafficking.	SEC7-like guanine nucleotide exchange family protein;(source:Araport11)
AT5G42020.3	protein_coding		Luminal binding protein (BiP2) involved in polar nuclei fusion during proliferation of endosperm nuclei.	Heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT1G06233.1	small_nucleolar_rna		HID2 is a snoRNA involved in pre-rRNA processing during ribosome biogenesis.	None;(source:Araport11)
AT3G15720.4	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT4G06598.2	protein_coding			basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT3G09445.1	long_noncoding_rna			None;(source:Araport11)
AT2G09700.1	small_nucleolar_rna			None;(source:Araport11)
AT5G18770.2	protein_coding			F-box/FBD-like domains containing protein;(source:Araport11)
AT1G01880.4	protein_coding		Encodes one of two GEN1 homologs in Arabidopsis.  It is a member of the class IV Rad2/XPG family of nucleases that processes Holliday junctions in a manner analogous to the HJ resolvases of phages, archaea, and bacteria.	5-3 exonuclease family protein;(source:Araport11)
AT2G05310.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G22880.2	protein_coding		Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.	DNA repair (Rad51) family protein;(source:Araport11)
AT1G01880.3	protein_coding		Encodes one of two GEN1 homologs in Arabidopsis.  It is a member of the class IV Rad2/XPG family of nucleases that processes Holliday junctions in a manner analogous to the HJ resolvases of phages, archaea, and bacteria.	5-3 exonuclease family protein;(source:Araport11)
AT1G08805.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G01035.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G01470;(source:Araport11)
AT4G05590.3	protein_coding		Encodes NRGA1, a putative mitochondrial pyruvate carrier that mediates ABA regulation of guard cell ion channels and drought stress responses.	pyruvate carrier-like protein;(source:Araport11)
AT5G06425.1	long_noncoding_rna			None;(source:Araport11)
AT3G07715.1	small_nucleolar_rna			None;(source:Araport11)
AT2G30660.2	protein_coding			ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT5G05600.2	protein_coding		Encodes a protein with similarity to flavonol synthases that is involved in the detoxifcation polycyclic aromatic hydrocarbons.One of 4 paralogs encoding a 2-oxoglutarate/Fe(II)-dependent oxygenases  that hydroxylates JA to 12-OH-JA.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G14740.6	protein_coding		Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm.  Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.	carbonic anhydrase 2;(source:Araport11)
AT5G14740.7	protein_coding		Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm.  Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.	carbonic anhydrase 2;(source:Araport11)
AT5G07495.1	long_noncoding_rna			None;(source:Araport11)
AT4G05005.1	long_noncoding_rna			None;(source:Araport11)
AT5G09115.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT1G50970.3	protein_coding			Membrane trafficking VPS53 family protein;(source:Araport11)
AT5G14740.8	protein_coding		Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm.  Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.	carbonic anhydrase 2;(source:Araport11)
AT5G14740.9	protein_coding		Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm.  Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.	carbonic anhydrase 2;(source:Araport11)
AT5G08940.1	long_noncoding_rna			None;(source:Araport11)
AT1G05717.1	long_noncoding_rna			None;(source:Araport11)
AT1G50970.2	protein_coding			Membrane trafficking VPS53 family protein;(source:Araport11)
AT4G18253.1	protein_coding			receptor Serine/Threonine kinase-like protein;(source:Araport11)
AT3G09705.1	long_noncoding_rna			None;(source:Araport11)
AT5G50080.2	protein_coding		encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain and is phosphorylated in planta. There are 7 members in this subfamily.	ethylene response factor 110;(source:Araport11)
AT1G07683.1	long_noncoding_rna			None;(source:Araport11)
AT1G30590.3	protein_coding			RNA polymerase I specific transcription initiation factor RRN3 protein;(source:Araport11)
AT1G30590.2	protein_coding			RNA polymerase I specific transcription initiation factor RRN3 protein;(source:Araport11)
AT4G25434.5	protein_coding			nudix hydrolase homolog 10;(source:Araport11)
AT4G25434.4	protein_coding			nudix hydrolase homolog 10;(source:Araport11)
AT4G25434.7	protein_coding			nudix hydrolase homolog 10;(source:Araport11)
AT4G25434.6	protein_coding			nudix hydrolase homolog 10;(source:Araport11)
AT4G25434.3	protein_coding			nudix hydrolase homolog 10;(source:Araport11)
AT4G35470.2	protein_coding		Encodes PIRL4, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.	plant intracellular ras group-related LRR 4;(source:Araport11)
AT3G06365.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT3G22450.2	protein_coding			Ribosomal L18p/L5e family protein;(source:Araport11)
AT1G05540.2	protein_coding			hypothetical protein (DUF295);(source:Araport11)
AT4G25434.8	protein_coding			nudix hydrolase homolog 10;(source:Araport11)
AT1G73020.3	protein_coding			anoctamin-like protein;(source:Araport11)
AT5G24870.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G20930.2	protein_coding		Encodes a 3-hydroxyisobutyrate dehydrogenase.	6-phosphogluconate dehydrogenase family protein;(source:Araport11)
AT4G20160.2	protein_coding			golgin family A protein;(source:Araport11)
AT5G59865.1	protein_coding			glycine-rich RNA-binding-like protein;(source:Araport11)
AT4G20160.3	protein_coding			golgin family A protein;(source:Araport11)
AT5G26146.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G26150;(source:Araport11)
AT5G05725.1	long_noncoding_rna			None;(source:Araport11)
AT3G13480.2	protein_coding			nuclear polyadenylated RNA-binding protein;(source:Araport11)
AT1G65985.2	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT1G08893.1	long_noncoding_rna			None;(source:Araport11)
AT1G04293.1	long_noncoding_rna			None;(source:Araport11)
AT4G35570.2	protein_coding		Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Cannot be phosphorylated by CK2alpha.	high mobility group B5;(source:Araport11)
AT1G06697.1	long_noncoding_rna			None;(source:Araport11)
AT5G09185.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G64150;(source:Araport11)
AT5G45350.3	protein_coding			proline-rich family protein;(source:Araport11)
AT5G19660.2	protein_coding		S1P appears to function as a Golgi-localized subtilase and to help protect seedlings against salt and osmotic stress. The roots of s1p-3 mutants are hypersensitive to NaCl, KCl, LiCl, and mannitol. Several salt-stress responsive genes show weaker induction in an s1P-3 mutant background. The proteolytic cleavage of the bZIP17 transcription factor depends on S1P in vitro. And there is evidence that S1P can cleave bZIP17 in vitro.	SITE-1 protease;(source:Araport11)
AT5G45350.7	protein_coding			proline-rich family protein;(source:Araport11)
AT5G45350.6	protein_coding			proline-rich family protein;(source:Araport11)
AT5G45350.5	protein_coding			proline-rich family protein;(source:Araport11)
AT5G45350.4	protein_coding			proline-rich family protein;(source:Araport11)
AT1G06833.3	novel_transcribed_region			novel transcribed region; detected in carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT5G35450.2	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT4G21770.2	protein_coding			Pseudouridine synthase family protein;(source:Araport11)
AT2G40360.2	protein_coding		Encodes BOP1, an ortholog of Block of cell proliferation (BOP) protein. A T-DNA null allele of the BOP1 gene is lethal, and a 50% decrease in transcript accumulation is sufficient to cause severe developmental defects linked to defective cell division.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G17180.2	protein_coding			serine carboxypeptidase-like 33;(source:Araport11)
AT3G07700.4	protein_coding		ABC1K7 is a member of an atypical protein kinase family that is induced by salt stress. Loss of function mutations affect the metabolic profile of chloroplast lipids. It appears to function along with ABC1K8 in mediating lipid membrane changes in response to stress.	Protein kinase superfamily protein;(source:Araport11)
AT5G23570.3	protein_coding		Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an  Primeunknown Prime protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript.  Acts before RDR6 in this pathway.The mRNA is cell-to-cell mobile.	XS domain-containing protein / XS zinc finger domain-containing protein-like protein;(source:Araport11)
AT1G09827.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G78580;(source:Araport11)
AT4G35930.3	protein_coding			F-box family protein;(source:Araport11)
AT1G33730.2	protein_coding			cytochrome P450, family 76, subfamily C, polypeptide 5;(source:Araport11)
AT5G23570.2	protein_coding		Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an  Primeunknown Prime protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript.  Acts before RDR6 in this pathway.The mRNA is cell-to-cell mobile.	XS domain-containing protein / XS zinc finger domain-containing protein-like protein;(source:Araport11)
AT2G05085.1	long_noncoding_rna			None;(source:Araport11)
AT4G18890.2	protein_coding			BES1/BZR1 homolog 3;(source:Araport11)
AT3G07760.8	protein_coding		Ortholog of Peach WEEP gene containing a  sterile alpha motif. In peach, WEEP is responsible for pendulous branching phenotype. However in Arabidopsis no morphological branching defect has been observed in mutant lines.	Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G07760.9	protein_coding		Ortholog of Peach WEEP gene containing a  sterile alpha motif. In peach, WEEP is responsible for pendulous branching phenotype. However in Arabidopsis no morphological branching defect has been observed in mutant lines.	Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT2G07644.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G19595.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G29050.2	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT3G07760.3	protein_coding		Ortholog of Peach WEEP gene containing a  sterile alpha motif. In peach, WEEP is responsible for pendulous branching phenotype. However in Arabidopsis no morphological branching defect has been observed in mutant lines.	Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT1G18870.3	protein_coding		Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene Primes function suggest that its function is redundant with that of ICS1 (AT1G7410).	isochorismate synthase 2;(source:Araport11)
AT3G07760.6	protein_coding		Ortholog of Peach WEEP gene containing a  sterile alpha motif. In peach, WEEP is responsible for pendulous branching phenotype. However in Arabidopsis no morphological branching defect has been observed in mutant lines.	Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G07760.7	protein_coding		Ortholog of Peach WEEP gene containing a  sterile alpha motif. In peach, WEEP is responsible for pendulous branching phenotype. However in Arabidopsis no morphological branching defect has been observed in mutant lines.	Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G07760.4	protein_coding		Ortholog of Peach WEEP gene containing a  sterile alpha motif. In peach, WEEP is responsible for pendulous branching phenotype. However in Arabidopsis no morphological branching defect has been observed in mutant lines.	Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G07760.5	protein_coding		Ortholog of Peach WEEP gene containing a  sterile alpha motif. In peach, WEEP is responsible for pendulous branching phenotype. However in Arabidopsis no morphological branching defect has been observed in mutant lines.	Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G08720.4	protein_coding		Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl).  Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.	serine/threonine protein kinase 2;(source:Araport11)
AT1G78120.2	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G62590.2	protein_coding		Encodes a functional adenylate cyclase.	pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT5G16200.2	protein_coding			50S ribosomal protein-like protein;(source:Araport11)
AT5G59290.3	protein_coding		Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate  several cell wall biosynthetic enzymes.	UDP-glucuronic acid decarboxylase 3;(source:Araport11)
AT3G05750.3	protein_coding		Encodes a member of the TRM superfamily, that plays a role in preprophase band formation during plant cell division and controls the robustness of the orientation of that cell division.	serine-rich adhesin for platelets-like protein;(source:Araport11)
AT5G05635.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G05750.4	protein_coding		Encodes a member of the TRM superfamily, that plays a role in preprophase band formation during plant cell division and controls the robustness of the orientation of that cell division.	serine-rich adhesin for platelets-like protein;(source:Araport11)
AT2G06200.3	protein_coding		Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower	growth-regulating factor 6;(source:Araport11)
AT3G09465.1	long_noncoding_rna			None;(source:Araport11)
AT2G01900.3	protein_coding		Encodes an inositol polyphosphate phosphatidylinositol 5-phosphatase that is expressed in roots and is involved in mediating salt tolerance through endocytosis.	DNAse I-like superfamily protein;(source:Araport11)
AT4G07635.1	small_nucleolar_rna			None;(source:Araport11)
AT2G09780.1	long_noncoding_rna			None;(source:Araport11)
AT1G17780.3	protein_coding		ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	transmembrane protein;(source:Araport11)
AT2G09050.1	long_noncoding_rna			None;(source:Araport11)
AT3G09355.1	long_noncoding_rna			None;(source:Araport11)
AT5G36907.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G45430.2	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G03645.1	long_noncoding_rna			None;(source:Araport11)
AT3G01255.1	long_noncoding_rna			None;(source:Araport11)
AT2G29310.3	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G08645.1	long_noncoding_rna			None;(source:Araport11)
AT1G76400.2	protein_coding			Ribophorin I;(source:Araport11)
AT2G07195.1	miRNA_primary_transcript			microRNA ath-MIR5632 precursor;(source:Araport11)
AT2G29310.4	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G37290.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT4G26520.4	protein_coding			Aldolase superfamily protein;(source:Araport11)
AT3G06165.1	long_noncoding_rna			None;(source:Araport11)
AT4G26520.2	protein_coding			Aldolase superfamily protein;(source:Araport11)
AT4G26520.3	protein_coding			Aldolase superfamily protein;(source:Araport11)
AT4G33020.2	protein_coding		member of Fe(II) transporter isolog family	ZIP metal ion transporter family;(source:Araport11)
AT3G59490.4	protein_coding			hypothetical protein;(source:Araport11)
AT3G07815.1	long_noncoding_rna			None;(source:Araport11)
AT5G66310.2	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT3G08375.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT1G66870.2	protein_coding			Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT3G16565.3	protein_coding			threonyl and alanyl tRNA synthetase second additional domain-containing protein;(source:Araport11)
AT1G09803.1	long_noncoding_rna			None;(source:Araport11)
AT3G02940.3	protein_coding		Encodes a putative transcription factor (MYB107).	myb domain protein 107;(source:Araport11)
AT3G15430.6	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G16565.6	protein_coding			threonyl and alanyl tRNA synthetase second additional domain-containing protein;(source:Araport11)
AT3G16565.5	protein_coding			threonyl and alanyl tRNA synthetase second additional domain-containing protein;(source:Araport11)
AT1G80030.4	protein_coding			Molecular chaperone Hsp40/DnaJ family protein;(source:Araport11)
AT5G49900.2	protein_coding			Beta-glucosidase, GBA2 type family protein;(source:Araport11)
AT5G49900.3	protein_coding			Beta-glucosidase, GBA2 type family protein;(source:Araport11)
AT4G06875.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G19150;(source:Araport11)
AT5G51810.2	protein_coding		Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.	gibberellin 20 oxidase 2;(source:Araport11)
AT1G75150.2	protein_coding			DNA ligase-like protein;(source:Araport11)
AT1G75150.3	protein_coding			DNA ligase-like protein;(source:Araport11)
AT1G28005.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G04090.6	protein_coding			histidine-tRNA ligase;(source:Araport11)
AT1G06890.4	protein_coding		UXT3 is a member of the NST-KT subfamily  of nucleotide/sugar transporters. It is localized to the golgi and functions as a UDP-Xyl transporter.	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT2G07045.1	long_noncoding_rna			None;(source:Araport11)
AT4G12640.2	protein_coding		Encodes a member of the Split ends (Spen) protein family that is characterized by an N-terminal domain, with one or more RNA recognition motifs and a SPOC domain. Knockout and overexpression mutants show no apparent changes in growth, development and flowering time under standard growth conditions.	RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT5G54260.2	protein_coding		DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and NBS1	DNA repair and meiosis protein (Mre11);(source:Araport11)
AT1G63330.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G63330.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G04133.1	long_noncoding_rna			None;(source:Araport11)
AT5G01190.2	protein_coding		putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).	laccase 10;(source:Araport11)
AT2G08375.1	small_nucleolar_rna			None;(source:Araport11)
AT4G12640.4	protein_coding		Encodes a member of the Split ends (Spen) protein family that is characterized by an N-terminal domain, with one or more RNA recognition motifs and a SPOC domain. Knockout and overexpression mutants show no apparent changes in growth, development and flowering time under standard growth conditions.	RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT1G55335.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G19565.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT1G60787.2	protein_coding			cysteine/histidine-rich C1 domain protein;(source:Araport11)
AT2G06375.1	long_noncoding_rna			None;(source:Araport11)
AT1G08367.1	small_nuclear_rna			U1;(source:Araport11)
AT5G00595.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G33585.2	protein_coding			subtilisin-like protease;(source:Araport11)
AT3G22190.4	protein_coding		Member of IQ67 (CaM binding) domain containing family.	IQ-domain 5;(source:Araport11)
AT4G13800.4	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT3G22190.3	protein_coding		Member of IQ67 (CaM binding) domain containing family.	IQ-domain 5;(source:Araport11)
AT5G08875.1	antisense_rna			Natural antisense transcript overlaps with AT5G58640;(source:Araport11)
AT3G07875.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G48190;(source:Araport11)
AT5G52720.2	protein_coding			Copper transport protein family;(source:Araport11)
AT3G62150.2	protein_coding		Encodes a facultative transporter controlling auxin concentrations in plant cells.	P-glycoprotein 21;(source:Araport11)
AT1G03960.4	protein_coding			Calcium-binding EF hand family protein;(source:Araport11)
AT2G09625.1	long_noncoding_rna			None;(source:Araport11)
AT5G46520.2	protein_coding		VICTR (VARIATION IN COMPOUND TRIGGERED ROOT growth response) encodes a TIR-NB-LRR (for Toll-Interleukin1 Receptor-nucleotide binding-Leucine-rich repeat) protein. VICTR is necessary for DFPM-induced root growth arrest and inhibition of abscisic acid-induced stomatal closing (DFPM is [5-(3,4-dichlorophenyl)furan-2-yl]-piperidine-1-ylmethanethione)(PMID:21620700). DFPM-mediated root growth arrest is accession-specific and depends on EDS1 and PAD4; Col-0 has a functional copy of VICTR. Induction of the VICTR gene by DFPM treatment requires functional VICTR (Col). A close homolog to VICTR, named VICTL (At5g46510) lies in tandem with VICTR.The mRNA is cell-to-cell mobile.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G02430.3	protein_coding		Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G08715.1	long_noncoding_rna			None;(source:Araport11)
AT4G39220.2	protein_coding		Key player of retrieval of ER membrane proteins	Rer1 family protein;(source:Araport11)
AT5G09855.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G67300;(source:Araport11)
AT2G29630.4	protein_coding		Encodes a protein involved in thiamin biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine (HMP) or  hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. A conserved TPP-binding site is located in the 3 Prime UTR of the At2g29630.2 gene model, and is predicted to function as a riboswitch. The riboswitch controls the  formation of transcripts with alternative 3 Prime UTR lengths, which affect mRNA accumulation and protein production. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene.  Recessive mutant isolated by Redei. Leaves but not cotyledons white, lethal; restored to normal by thiamine or 2,5-dimethyl-4-aminopyrimidine.	thiaminC;(source:Araport11)
AT2G08700.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G34920;(source:Araport11)
AT4G15570.3	protein_coding		Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G28930.2	protein_coding		avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2	AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT3G28930.3	protein_coding		avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2	AIG2-like (avirulence induced gene) family protein;(source:Araport11)
AT3G01525.1	antisense_rna			Natural antisense transcript overlaps with AT3G04880;(source:Araport11)
AT4G07200.1	long_noncoding_rna			None;(source:Araport11)
AT1G77880.3	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT5G16420.3	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT3G62150.3	protein_coding		Encodes a facultative transporter controlling auxin concentrations in plant cells.	P-glycoprotein 21;(source:Araport11)
AT3G50190.3	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT2G08355.1	long_noncoding_rna			None;(source:Araport11)
AT3G23300.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G40830.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G27960.3	protein_coding		encodes a protein whose C-terminal region is similar to ECT1 and ECT2, which bind to CIPK1.	evolutionarily conserved C-terminal region 9;(source:Araport11)
AT5G64816.4	protein_coding		Thionin-like gene.	thionin-like protein;(source:Araport11)
AT5G09250.4	protein_coding		putative transcriptional co-activator (KIWI) mRNA, complete	ssDNA-binding transcriptional regulator;(source:Araport11)
AT4G05750.1	long_noncoding_rna			None;(source:Araport11)
AT3G50190.4	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT1G15470.2	protein_coding		WD40 nucleoplasmic shuttling protein that positively regulates the Abscisic acid (ABA) response by interacting with and maintaining the stability of ABI5 in the nucleus. Nuclear export of XIW1 is XPO1-dependent. Involved in regulating seed germination, primary root growth, and drought stress resistance.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G05090.2	protein_coding			Inositol monophosphatase family protein;(source:Araport11)
AT4G19160.4	protein_coding			transglutaminase family protein;(source:Araport11)
AT2G03480.3	protein_coding		Encodes QUASIMODO2 LIKE2 (QUL2), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.	QUASIMODO2 LIKE 2;(source:Araport11)
AT1G53890.5	protein_coding			LURP-one-like protein (DUF567);(source:Araport11)
AT1G53890.4	protein_coding			LURP-one-like protein (DUF567);(source:Araport11)
AT1G08343.1	miRNA_primary_transcript			microRNA ath-MIR4227 precursor;(source:Araport11)
AT4G15570.4	protein_coding		Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G42160.2	protein_coding		Encodes a RING domain containing protein BRIZ1. BRIZ1 (At2g42160) and BRIZ2 (At2g26000) proteins form a heteromeric E3 ligase complex required for seed germination and post-germination growth.	zinc finger (ubiquitin-hydrolase) domain-containing protein;(source:Araport11)
AT2G42160.3	protein_coding		Encodes a RING domain containing protein BRIZ1. BRIZ1 (At2g42160) and BRIZ2 (At2g26000) proteins form a heteromeric E3 ligase complex required for seed germination and post-germination growth.	zinc finger (ubiquitin-hydrolase) domain-containing protein;(source:Araport11)
AT1G04107.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, aerial;(source:Araport11)
AT3G56780.2	protein_coding			FBD, F-box and Leucine Rich Repeat domains containing protein;(source:Araport11)
AT3G04235.1	long_noncoding_rna			None;(source:Araport11)
AT1G09910.3	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT1G09910.2	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT1G53870.3	protein_coding			LURP-one-like protein (DUF567);(source:Araport11)
AT1G15490.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G02975.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G08087.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G56010;(source:Araport11)
AT1G08087.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G56010;(source:Araport11)
AT2G18090.2	protein_coding			PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein;(source:Araport11)
AT5G39870.2	protein_coding			hypothetical protein (DUF1216);(source:Araport11)
AT5G00650.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G47900.10	protein_coding			heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT4G30630.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G00650.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G04123.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G02430;(source:Araport11)
AT5G00650.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G02905.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G18580;(source:Araport11)
AT3G06530.4	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT3G58340.2	protein_coding			TRAF-like family protein;(source:Araport11)
AT2G38650.3	protein_coding			galacturonosyltransferase 7;(source:Araport11)
AT3G00570.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G55170.3	protein_coding			Ribosomal L29 family protein;(source:Araport11)
AT3G48550.2	protein_coding			SHOOT GRAVITROPISM-like protein;(source:Araport11)
AT5G04365.1	long_noncoding_rna			None;(source:Araport11)
AT4G07865.1	long_noncoding_rna			None;(source:Araport11)
AT1G48240.2	protein_coding		member of NPSN Gene Family	Putative plant snare 12;(source:Araport11)
AT3G00790.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G45500.3	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT4G09760.4	protein_coding		encodes a choline synthase whose gene expression is induced by high salt and mannitol.	Protein kinase superfamily protein;(source:Araport11)
AT2G41505.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G41505.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G14515.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G68480.2	protein_coding		Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue.  Together with NUB, it is involved in stamen and carpel development.	C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT2G21510.2	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G68872.3	other_rna			None;(source:Araport11)
AT5G21900.2	protein_coding		Contributes to UV tolerance through nucleotide excision repair.	RNI-like superfamily protein;(source:Araport11)
AT5G10900.3	protein_coding			Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
AT3G01315.1	long_noncoding_rna			None;(source:Araport11)
AT3G05320.2	protein_coding		Golgi localized protein with similarity to protein O-fucosyltransferases. Mutants show lower seed set/reduced fertility. Mutant pollen fails to compete with wild type due to the inability to penetrate the stigma-style boundary.	O-fucosyltransferase family protein;(source:Araport11)
AT3G05320.3	protein_coding		Golgi localized protein with similarity to protein O-fucosyltransferases. Mutants show lower seed set/reduced fertility. Mutant pollen fails to compete with wild type due to the inability to penetrate the stigma-style boundary.	O-fucosyltransferase family protein;(source:Araport11)
AT4G01460.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT4G09780.2	protein_coding			TRAF-like family protein;(source:Araport11)
AT2G06625.1	long_noncoding_rna			None;(source:Araport11)
AT1G24095.2	protein_coding			Putative thiol-disulfide oxidoreductase DCC;(source:Araport11)
AT2G21510.5	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT3G50140.2	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT3G27640.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G09180.2	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT3G09180.3	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT1G03960.5	protein_coding			Calcium-binding EF hand family protein;(source:Araport11)
AT2G14510.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G00670.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G06630.7	protein_coding			protein kinase family protein;(source:Araport11)
AT5G18933.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G05583.1	long_noncoding_rna			None;(source:Araport11)
AT4G03425.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03425.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G09895.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G47390;(source:Araport11)
AT5G38210.2	protein_coding			Protein kinase family protein;(source:Araport11)
AT5G38210.3	protein_coding			Protein kinase family protein;(source:Araport11)
AT3G06630.5	protein_coding			protein kinase family protein;(source:Araport11)
AT3G48835.1	protein_coding			polynucleotide adenylyltransferase domain/RNA recognition motif protein;(source:Araport11)
AT4G24615.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G72990.4	protein_coding			beta-galactosidase 17;(source:Araport11)
AT3G63445.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G63440;(source:Araport11)
AT3G63445.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G63440;(source:Araport11)
AT3G63445.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G63440;(source:Araport11)
AT2G29650.4	protein_coding		Encodes an inorganic phosphate transporter (PHT4;1) that  is localized to the thylakoid membrane.	phosphate transporter 4;(source:Araport11)
AT3G22565.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G22565.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G56260.5	protein_coding			Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase;(source:Araport11)
AT5G58003.2	protein_coding		Encodes a polypeptide that contains FCPH and BRCT domains. RNAi suppression mutant lines were generated, which displayed a range of phenotypic abnormalities, including: incomplete to no cotyledon expansion, slow growth, epinastic leaves or small inflorescences.	C-terminal domain phosphatase-like 4;(source:Araport11)
AT5G58003.3	protein_coding		Encodes a polypeptide that contains FCPH and BRCT domains. RNAi suppression mutant lines were generated, which displayed a range of phenotypic abnormalities, including: incomplete to no cotyledon expansion, slow growth, epinastic leaves or small inflorescences.	C-terminal domain phosphatase-like 4;(source:Araport11)
AT5G61690.2	protein_coding			ABC2 homolog 15;(source:Araport11)
AT5G64687.2	protein_coding			ubiquinol oxidase;(source:Araport11)
AT2G33793.2	protein_coding		Encodes a protein component of the pre-synaptic chromosome axis. Mutants show quantitative defects in meiotic recombination. Interacts with ASY1/ASY3.	DNA ligase-like protein;(source:Araport11)
AT2G26210.4	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT1G09107.1	long_noncoding_rna			None;(source:Araport11)
AT5G43590.2	protein_coding			Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein;(source:Araport11)
AT1G17280.8	protein_coding		Group XIV ubiquitin-conjugating enzyme that functions negative regulation of drought stress.	ubiquitin-conjugating enzyme 34;(source:Araport11)
AT1G17280.9	protein_coding		Group XIV ubiquitin-conjugating enzyme that functions negative regulation of drought stress.	ubiquitin-conjugating enzyme 34;(source:Araport11)
AT3G08720.3	protein_coding		Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl).  Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.	serine/threonine protein kinase 2;(source:Araport11)
AT1G04057.1	antisense_rna			Natural antisense transcript overlaps with AT1G01760;(source:Araport11)
AT2G08615.1	novel_transcribed_region			novel transcribed region; detected in receptacle, flower, pollen;(source:Araport11)
AT3G59090.4	protein_coding			tobamovirus multiplication protein;(source:Araport11)
AT5G46500.3	protein_coding			protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein;(source:Araport11)
AT1G17280.3	protein_coding		Group XIV ubiquitin-conjugating enzyme that functions negative regulation of drought stress.	ubiquitin-conjugating enzyme 34;(source:Araport11)
AT2G27730.4	protein_coding			copper ion binding protein;(source:Araport11)
AT1G17280.6	protein_coding		Group XIV ubiquitin-conjugating enzyme that functions negative regulation of drought stress.	ubiquitin-conjugating enzyme 34;(source:Araport11)
AT1G17280.7	protein_coding		Group XIV ubiquitin-conjugating enzyme that functions negative regulation of drought stress.	ubiquitin-conjugating enzyme 34;(source:Araport11)
AT1G17280.4	protein_coding		Group XIV ubiquitin-conjugating enzyme that functions negative regulation of drought stress.	ubiquitin-conjugating enzyme 34;(source:Araport11)
AT1G17280.5	protein_coding		Group XIV ubiquitin-conjugating enzyme that functions negative regulation of drought stress.	ubiquitin-conjugating enzyme 34;(source:Araport11)
AT2G03140.12	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G03140.11	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G03140.10	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G47430.4	protein_coding			DWNN domain, a CCHC-type zinc finger;(source:Araport11)
AT5G08765.1	long_noncoding_rna			None;(source:Araport11)
AT2G37260.3	protein_coding		Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds  are reduced in size but only when the mutant allele is transmitted through the female parent.Loss of function allele corresponding to the DSL QTL  are associated with a reduction in interploidy lethality.	WRKY family transcription factor family protein;(source:Araport11)
AT2G32340.2	protein_coding			TraB family protein;(source:Araport11)
AT3G08730.2	protein_coding		Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress.  The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues.	protein-serine kinase 1;(source:Araport11)
AT2G45240.2	protein_coding		Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development.	methionine aminopeptidase 1A;(source:Araport11)
AT2G38880.10	protein_coding		Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1.  Confers drought tolerance.	nuclear factor Y, subunit B1;(source:Araport11)
AT2G38880.11	protein_coding		Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1.  Confers drought tolerance.	nuclear factor Y, subunit B1;(source:Araport11)
AT1G57650.4	protein_coding			ATP binding protein;(source:Araport11)
AT5G44530.2	protein_coding			Subtilase family protein;(source:Araport11)
AT1G13940.2	protein_coding			T-box transcription factor, putative (DUF863);(source:Araport11)
AT2G37700.3	protein_coding			Fatty acid hydroxylase superfamily;(source:Araport11)
AT4G15563.10	protein_coding			F-box-like protein;(source:Araport11)
AT3G07760.10	protein_coding		Ortholog of Peach WEEP gene containing a  sterile alpha motif. In peach, WEEP is responsible for pendulous branching phenotype. However in Arabidopsis no morphological branching defect has been observed in mutant lines.	Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT3G07760.11	protein_coding		Ortholog of Peach WEEP gene containing a  sterile alpha motif. In peach, WEEP is responsible for pendulous branching phenotype. However in Arabidopsis no morphological branching defect has been observed in mutant lines.	Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
AT2G37700.4	protein_coding			Fatty acid hydroxylase superfamily;(source:Araport11)
AT2G33220.2	protein_coding			GRIM-19 protein;(source:Araport11)
AT5G05815.1	long_noncoding_rna			None;(source:Araport11)
AT1G28090.4	protein_coding			Polynucleotide adenylyltransferase family protein;(source:Araport11)
AT3G02855.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G14130;(source:Araport11)
AT1G55200.4	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT5G09125.1	long_noncoding_rna			None;(source:Araport11)
AT1G55200.2	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT1G55200.3	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT3G23010.2	protein_coding			receptor like protein 36;(source:Araport11)
AT3G04490.4	protein_coding			exportin-4 protein;(source:Araport11)
AT3G13080.5	protein_coding		encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites.  The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.	multidrug resistance-associated protein 3;(source:Araport11)
AT4G15890.2	protein_coding		CAP-3D is a subunit of condensin. It a target of MMD1 regulation and also involved in meiotic chromosome condensation. Mutants have reduced fertility. Required for the correct spatial relationship between centromeres and rDNA arrays.	binding protein;(source:Araport11)
AT3G04490.3	protein_coding			exportin-4 protein;(source:Araport11)
AT3G04490.2	protein_coding			exportin-4 protein;(source:Araport11)
AT5G25280.3	protein_coding			serine-rich protein-like protein;(source:Araport11)
AT5G18065.2	protein_coding			target of trans acting-siR480/255 protein;(source:Araport11)
AT1G31350.2	protein_coding			KAR-UP F-box 1;(source:Araport11)
AT4G02975.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G21230.2	protein_coding		The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order:  p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.	4-coumarate:CoA ligase 5;(source:Araport11)
AT5G02950.2	protein_coding			Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT5G48620.6	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT5G19160.2	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 11;(source:Araport11)
AT5G07700.2	protein_coding		Encodes a putative transcription factor (MYB76).	myb domain protein 76;(source:Araport11)
AT2G31960.3	protein_coding		encodes a protein similar to callose synthase	glucan synthase-like 3;(source:Araport11)
AT1G08773.1	long_noncoding_rna			None;(source:Araport11)
AT3G54700.2	protein_coding		Encodes Pht1;7, a member of the Pht1 family of phosphate transporters which include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341).	phosphate transporter 1;(source:Araport11)
AT5G00960.1	long_noncoding_rna			None;(source:Araport11)
AT5G19140.3	protein_coding			aluminum induced protein with YGL and LRDR motifs;(source:Araport11)
AT5G01855.1	long_noncoding_rna			None;(source:Araport11)
AT3G21530.4	protein_coding			DNAse I-like superfamily protein;(source:Araport11)
AT3G50630.2	protein_coding		Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.  Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation.	KIP-related protein 2;(source:Araport11)
AT1G09117.1	long_noncoding_rna			None;(source:Araport11)
AT1G69560.2	protein_coding		Encodes LOF2 (LATERAL ORGAN FUSION2), a MYB-domain transcription factor expressed in organ boundaries.  Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF1 (At1g26780).	myb domain protein 105;(source:Araport11)
AT3G22470.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G32415.3	protein_coding			Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein;(source:Araport11)
AT1G07980.2	protein_coding			nuclear factor Y, subunit C10;(source:Araport11)
AT1G05643.1	long_noncoding_rna			None;(source:Araport11)
AT1G04253.1	long_noncoding_rna			None;(source:Araport11)
AT2G07285.1	long_noncoding_rna			None;(source:Araport11)
AT1G05673.1	small_nuclear_rna			U6atac;(source:Araport11)
AT4G17915.2	pseudogene		pseudogene of pentatricopeptide (PPR) repeat-containing/C3HC4-type RING finger containing protein	pseudogene of Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT2G06705.1	long_noncoding_rna			None;(source:Araport11)
AT5G54000.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G05875.1	long_noncoding_rna			None;(source:Araport11)
AT2G09680.1	small_nucleolar_rna			None;(source:Araport11)
AT3G28155.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G28090.5	protein_coding			Polynucleotide adenylyltransferase family protein;(source:Araport11)
AT5G61190.11	protein_coding			putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein;(source:Araport11)
AT5G61190.10	protein_coding			putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein;(source:Araport11)
AT3G09080.4	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G09555.1	long_noncoding_rna			None;(source:Araport11)
AT2G45100.3	protein_coding		Cyclin/Brf1-like TBP-binding protein. Double mutants with BRF2 show defects in pollen development.	Cyclin/Brf1-like TBP-binding protein;(source:Araport11)
AT2G45100.2	protein_coding		Cyclin/Brf1-like TBP-binding protein. Double mutants with BRF2 show defects in pollen development.	Cyclin/Brf1-like TBP-binding protein;(source:Araport11)
AT5G07570.3	protein_coding			glycine/proline-rich protein;(source:Araport11)
AT2G32720.2	protein_coding		Participates with ELO2 in VLCFA synthesis.	cytochrome B5 isoform B;(source:Araport11)
AT5G55100.7	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G55100.6	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G55100.5	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G55100.4	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G55100.3	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G56260.4	protein_coding			Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase;(source:Araport11)
AT2G20290.4	protein_coding		member of Myosin-like proteins	myosin-like protein XIG;(source:Araport11)
AT5G55100.9	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G55100.8	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT3G01775.1	long_noncoding_rna			None;(source:Araport11)
AT2G09140.1	long_noncoding_rna			None;(source:Araport11)
AT1G09007.1	long_noncoding_rna			None;(source:Araport11)
AT5G09680.3	protein_coding		Encodes RLF (Reduced Lateral root Formation).  Involved in lateral root formation.  Contains a cytochrome b5-like heme/steroid binding domain.  Localized in the cytosol.	reduced lateral root formation;(source:Araport11)
AT2G00820.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G43930.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G04745.1	long_noncoding_rna			None;(source:Araport11)
AT3G59030.2	protein_coding		Encodes a proton antiporter. Involved in the transportation of proanthocyanidin precursors into the vacuole. In vitro transport experiments showed that cyanidin-3-O-glucoside (anthocyanin) was an effective substrate, whereas the proanthocyanidin precursor epicatechin was not transported. However catechin-3-O-glucoside inhibited anthocyanin transport in a dose-dependent manner suggesting that glycosylated epicatechin is the in vivo substrate. Recessive mutation has strong reduction of proanthocyanidin deposition in vacuoles and has reduced dormancy. Expressed in the endothelium of ovules and developing seeds.	MATE efflux family protein;(source:Araport11)
AT5G63220.3	protein_coding			golgi-to-ER traffic-like protein;(source:Araport11)
AT5G63220.2	protein_coding			golgi-to-ER traffic-like protein;(source:Araport11)
AT1G58007.4	protein_coding			multidrug resistance protein;(source:Araport11)
AT2G28105.2	protein_coding			replication factor-A carboxy-terminal domain protein;(source:Araport11)
AT1G58007.3	protein_coding			multidrug resistance protein;(source:Araport11)
AT2G30340.2	protein_coding		Lateral Organ Boundaries domain protein. LOB13 promotes lateral root formation.	LOB domain-containing protein 13;(source:Araport11)
AT3G02820.2	protein_coding			zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT3G24360.6	protein_coding			ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11)
AT5G43990.8	protein_coding		Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT5G04875.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, flower, pollen;(source:Araport11)
AT4G25315.3	protein_coding			Expressed protein;(source:Araport11)
AT5G04875.3	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, flower, pollen;(source:Araport11)
AT1G10700.2	protein_coding		Encodes a P-independent phosphoribosyl pyrophosphate (PRPP) synthase.	phosphoribosyl pyrophosphate (PRPP) synthase 3;(source:Araport11)
AT5G06235.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G41860;(source:Araport11)
AT1G04393.1	miRNA_primary_transcript			microRNA ath-MIR5640 precursor;(source:Araport11)
AT1G68080.5	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G21950.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G49390.3	protein_coding		RNA-binding protein, putative, RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196.Member of a family of PAB2 domain containing proteins.	CTC-interacting domain 10;(source:Araport11)
AT5G00975.1	long_noncoding_rna			None;(source:Araport11)
AT1G04173.1	long_noncoding_rna			None;(source:Araport11)
AT3G01945.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G07170;(source:Araport11)
AT3G07470.2	protein_coding			transmembrane protein, putative (Protein of unknown function, DUF538);(source:Araport11)
AT3G26135.1	protein_coding			2-oxoglutarate/Fe(II)-dependent oxygenase family protein;(source:Araport11)
AT1G55940.2	protein_coding			cytochrome P450 family protein;(source:Araport11)
AT2G14050.2	protein_coding			minichromosome maintenance 9;(source:Araport11)
AT3G21530.3	protein_coding			DNAse I-like superfamily protein;(source:Araport11)
AT1G11540.2	protein_coding			Sulfite exporter TauE/SafE family protein;(source:Araport11)
AT1G06383.1	long_noncoding_rna			None;(source:Araport11)
AT3G62310.2	protein_coding			RNA helicase family protein;(source:Araport11)
AT1G06293.1	long_noncoding_rna			None;(source:Araport11)
AT5G63480.2	protein_coding			mediator of RNA polymerase II transcription subunit;(source:Araport11)
AT3G08215.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51970;(source:Araport11)
AT2G19180.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G25495.2	pseudogene		pseudogene of leucine-rich repeat protein	pseudogene of gamma-irradiation and mitomycin c induced 1;(source:Araport11)
AT3G25495.4	pseudogene		pseudogene of leucine-rich repeat protein	pseudogene of gamma-irradiation and mitomycin c induced 1;(source:Araport11)
AT4G18740.4	protein_coding			Rho termination factor;(source:Araport11)
AT1G02410.3	protein_coding		Encodes a member of the cytochrome c oxidase 11 protein family.  It is an integral mitochondrial protein and likely plays an important role as a mitochondrial chaperone in COX complex assembly, affecting plant growth and pollen germination.	cytochrome c oxidase assembly protein CtaG / Cox11 family;(source:Araport11)
AT1G02410.2	protein_coding		Encodes a member of the cytochrome c oxidase 11 protein family.  It is an integral mitochondrial protein and likely plays an important role as a mitochondrial chaperone in COX complex assembly, affecting plant growth and pollen germination.	cytochrome c oxidase assembly protein CtaG / Cox11 family;(source:Araport11)
AT1G05763.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G22700;(source:Araport11)
AT5G34930.3	protein_coding			arogenate dehydrogenase;(source:Araport11)
AT5G34930.2	protein_coding			arogenate dehydrogenase;(source:Araport11)
AT5G55550.10	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G03665.1	long_noncoding_rna			None;(source:Araport11)
AT1G66520.2	protein_coding			formyltransferase;(source:Araport11)
AT3G61410.2	protein_coding			U-box kinase family protein;(source:Araport11)
AT1G04500.2	protein_coding			CCT motif family protein;(source:Araport11)
AT1G04500.4	protein_coding			CCT motif family protein;(source:Araport11)
AT5G08205.1	long_noncoding_rna			None;(source:Araport11)
AT1G08377.1	long_noncoding_rna			None;(source:Araport11)
AT2G05705.1	long_noncoding_rna			None;(source:Araport11)
AT5G22420.3	protein_coding			fatty acid reductase 7;(source:Araport11)
AT5G01245.1	long_noncoding_rna			None;(source:Araport11)
AT1G05647.1	long_noncoding_rna			None;(source:Araport11)
AT3G03605.1	long_noncoding_rna			None;(source:Araport11)
AT5G53550.6	protein_coding			YELLOW STRIPE like 3;(source:Araport11)
AT5G53550.4	protein_coding			YELLOW STRIPE like 3;(source:Araport11)
AT5G53550.5	protein_coding			YELLOW STRIPE like 3;(source:Araport11)
AT5G53550.3	protein_coding			YELLOW STRIPE like 3;(source:Araport11)
AT4G22070.2	protein_coding		member of WRKY Transcription Factor; Group II-b	WRKY DNA-binding protein 31;(source:Araport11)
AT4G22070.3	protein_coding		member of WRKY Transcription Factor; Group II-b	WRKY DNA-binding protein 31;(source:Araport11)
AT2G01890.3	protein_coding		Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group.	purple acid phosphatase 8;(source:Araport11)
AT2G08720.1	long_noncoding_rna			None;(source:Araport11)
AT2G21450.2	protein_coding			chromatin remodeling 34;(source:Araport11)
AT4G16740.3	protein_coding		Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect <i>Plutella xylostella</i>. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.	terpene synthase 03;(source:Araport11)
AT4G16740.4	protein_coding		Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect <i>Plutella xylostella</i>. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.	terpene synthase 03;(source:Araport11)
AT5G61030.2	protein_coding		Encodes a glycine-rich RNA binding protein that is involved in C-> U RNA editing in mitochondria. Gene expression is induced by cold.The mRNA is cell-to-cell mobile.	glycine-rich RNA-binding protein 3;(source:Araport11)
AT5G58140.6	protein_coding		Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation.  Localized to the Golgi apparatus under the induction of blue light.The mRNA is cell-to-cell mobile.	phototropin 2;(source:Araport11)
AT2G08680.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G34770;(source:Araport11)
AT4G17615.4	protein_coding		Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.	calcineurin B-like protein 1;(source:Araport11)
AT5G11350.4	protein_coding		Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT5G11350.5	protein_coding		Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT1G54385.3	protein_coding		At1G54385 encodes the plant KASH protein SINE1; SINE1 interacts with SUN1 and SUN2, is colocalized with F-actin, and is localized at the nuclear envelope.	ARM repeat superfamily protein;(source:Araport11)
AT1G27110.4	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G17615.3	protein_coding		Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.	calcineurin B-like protein 1;(source:Araport11)
AT5G24260.5	protein_coding			prolyl oligopeptidase family protein;(source:Araport11)
AT2G44090.4	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT2G44090.5	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT2G03505.4	protein_coding			Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT2G03505.2	protein_coding			Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT2G03505.3	protein_coding			Carbohydrate-binding X8 domain superfamily protein;(source:Araport11)
AT3G53360.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G08340.1	long_noncoding_rna			None;(source:Araport11)
AT4G12005.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G06063.1	long_noncoding_rna			None;(source:Araport11)
AT5G65685.10	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G65685.11	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G65685.12	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT2G11810.3	protein_coding		MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation.  Does not contribute to galactolipid synthesis under P1-sufficient conditions.	monogalactosyldiacylglycerol synthase type C;(source:Araport11)
AT1G53380.5	protein_coding			hypothetical protein (DUF641);(source:Araport11)
AT1G53380.4	protein_coding			hypothetical protein (DUF641);(source:Araport11)
AT3G15680.2	protein_coding			Ran BP2/NZF zinc finger-like superfamily protein;(source:Araport11)
AT4G08015.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G28180;(source:Araport11)
AT5G14780.2	protein_coding		Encodes a NAD-dependent formate dehydrogenase.	formate dehydrogenase;(source:Araport11)
AT5G14780.3	protein_coding		Encodes a NAD-dependent formate dehydrogenase.	formate dehydrogenase;(source:Araport11)
AT2G33240.7	protein_coding		member of Myosin-like proteins	myosin XI D;(source:Araport11)
AT2G33240.6	protein_coding		member of Myosin-like proteins	myosin XI D;(source:Araport11)
AT2G48090.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G28180.2	protein_coding			DEAD-box ATP-dependent RNA helicase-like protein;(source:Araport11)
AT3G43210.2	protein_coding		Encodes a kinesin TETRASPORE. Required for cytokinesis in pollen. In mutants, all four microspore nuclei remain within the same cytoplasm after meiosis.	ATP binding microtubule motor family protein;(source:Araport11)
AT3G06380.2	protein_coding		Member of plant TLP family which differs in having an F box domain. Interacts with ASK proteins.Plasma membrane tethering is mediated by PIP2 binding domain.  Mutants are insensitive to ABA. May act redundantly with its paralog TPL3.	tubby-like protein 9;(source:Araport11)
AT4G10510.4	protein_coding			Subtilase family protein;(source:Araport11)
AT4G23730.3	protein_coding			Galactose mutarotase-like superfamily protein;(source:Araport11)
AT4G10510.2	protein_coding			Subtilase family protein;(source:Araport11)
AT4G10510.3	protein_coding			Subtilase family protein;(source:Araport11)
AT3G43210.4	protein_coding		Encodes a kinesin TETRASPORE. Required for cytokinesis in pollen. In mutants, all four microspore nuclei remain within the same cytoplasm after meiosis.	ATP binding microtubule motor family protein;(source:Araport11)
AT3G43210.5	protein_coding		Encodes a kinesin TETRASPORE. Required for cytokinesis in pollen. In mutants, all four microspore nuclei remain within the same cytoplasm after meiosis.	ATP binding microtubule motor family protein;(source:Araport11)
AT2G45850.3	protein_coding			AT hook motif DNA-binding family protein;(source:Araport11)
AT4G15040.2	protein_coding			Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT2G17033.3	protein_coding			pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT1G30520.3	protein_coding		Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.	acyl-activating enzyme 14;(source:Araport11)
AT2G17033.4	protein_coding			pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT5G23260.4	protein_coding		Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat.  Also shown to be necessary for determining the identity of the endothelial layer within the ovule.  Paralogous to GOA. Plays a maternal role in fertilization and seed development.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT2G07970.1	long_noncoding_rna			None;(source:Araport11)
AT2G22260.7	protein_coding		Encodes a homolog of the E. coli AlkB gene, whose protein product is a DNA repair enzyme important in reversing methylation damage.	oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT2G22260.6	protein_coding		Encodes a homolog of the E. coli AlkB gene, whose protein product is a DNA repair enzyme important in reversing methylation damage.	oxidoreductase, 2OG-Fe(II) oxygenase family protein;(source:Araport11)
AT2G25620.2	protein_coding		Encodes DBP1, a member of the DBP factors (DNA-binding protein phosphatases) featuring sequence-specific DNA-binding and protein phosphatase activity.  DBP1 is involved in plant-potyvirus interactions.  Loss-of-function of DBP1 renders resistance to potyviruses.	DNA-binding protein phosphatase 1;(source:Araport11)
AT3G44435.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G13420.2	pseudogene		Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G29100.2	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.9;(source:Araport11)
AT4G28110.2	protein_coding		Member of the R2R3 factor gene family. Expression is induced in response to desiccation, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion.	myb domain protein 41;(source:Araport11)
AT2G30370.3	protein_coding		Encodes a small, potentially secreted protein that acts as an inhibitor of stomatal production though likely not through direct interaction with the TMM receptor.  It is homologous to known stomatal regulators EPF1 and EPF2.	allergen-like protein;(source:Araport11)
AT1G64790.3	protein_coding		ILITHYIA (ILA) is a HEAT repeat protein involved in plant immunity. The gene is also involved in systemic acquired resistance induced by P. syringae expressing avrRps4. Loss-of-function mutants of ILA caused pleiotropic defects in the mutant plants. The mutant plants are smaller in size and the leaves are serrated and yellow to light green in color. Required for bacterium-triggered stomatal closure.	ILITYHIA;(source:Araport11)
AT2G41060.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G06975.1	long_noncoding_rna			None;(source:Araport11)
AT1G24220.2	protein_coding			paired amphipathic helix repeat-containing protein;(source:Araport11)
AT3G05790.2	protein_coding		Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790).  Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells.  Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.	lon protease 4;(source:Araport11)
AT5G03320.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G75860.2	protein_coding			DNA ligase;(source:Araport11)
AT1G05730.2	protein_coding			FAM136A-like protein (DUF842);(source:Araport11)
AT5G03985.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G25460;(source:Araport11)
AT1G05710.9	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G05710.8	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G04707.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G09610;(source:Araport11)
AT1G72852.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G72850;(source:Araport11)
AT4G00800.2	protein_coding			transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT1G05710.7	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G06943.1	long_noncoding_rna			None;(source:Araport11)
AT1G70030.3	protein_coding			Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT3G52155.4	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT5G61550.4	protein_coding			U-box domain-containing protein kinase family protein;(source:Araport11)
AT3G52155.2	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT4G13960.3	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT4G06250.1	small_nucleolar_rna			None;(source:Araport11)
AT2G09460.1	small_nucleolar_rna			None;(source:Araport11)
AT3G00840.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G19240.2	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT5G09595.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G66280;(source:Araport11)
AT3G01235.1	long_noncoding_rna			None;(source:Araport11)
AT1G07520.4	protein_coding			GRAS family transcription factor;(source:Araport11)
AT3G56250.4	protein_coding			hypothetical protein;(source:Araport11)
AT5G40440.6	protein_coding		Encodes a mitogen-activated protein kinase kinase.  Activates MPK8 and is a target of MPKKK20. Mutant root growth is sensitive oryzalin and suggestive of a role in signaling during microtubule organization.	mitogen-activated protein kinase kinase 3;(source:Araport11)
AT2G33680.8	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G39480.2	protein_coding			P-glycoprotein 6;(source:Araport11)
AT5G40440.2	protein_coding		Encodes a mitogen-activated protein kinase kinase.  Activates MPK8 and is a target of MPKKK20. Mutant root growth is sensitive oryzalin and suggestive of a role in signaling during microtubule organization.	mitogen-activated protein kinase kinase 3;(source:Araport11)
AT5G40440.3	protein_coding		Encodes a mitogen-activated protein kinase kinase.  Activates MPK8 and is a target of MPKKK20. Mutant root growth is sensitive oryzalin and suggestive of a role in signaling during microtubule organization.	mitogen-activated protein kinase kinase 3;(source:Araport11)
AT2G33680.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G33680.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G06595.1	miRNA_primary_transcript			microRNA ath-MIR5638a precursor;(source:Araport11)
AT2G33680.7	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G33680.6	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G33680.5	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G33680.4	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G09660.5	protein_coding		encodes a microbody NAD-dependent malate dehydrogenase  encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.	peroxisomal NAD-malate dehydrogenase 2;(source:Araport11)
AT1G77460.3	protein_coding		Encodes a plasma membrane, microtubule associated protein with sequence similarity to CSI1 that is involved in cellulose biosynthesis and cell elongation. A mutation in CSI3 alone do not appear to affect growth but enhances the cell elongation phenotype of CSI1 mutants. CSI3 co localizes with CSI1 and CESA3 and CESA6.	CELLULOSE SYNTHASE INTERACTIVE 3;(source:Araport11)
AT3G01215.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G02920;(source:Araport11)
AT3G49470.2	protein_coding			nascent polypeptide-associated complex subunit alpha-like protein 2;(source:Araport11)
AT3G06805.1	long_noncoding_rna			None;(source:Araport11)
AT2G00840.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G26190.6	protein_coding		TTM2 is a triphosphate tunnel metalloenzyme that displays pyrophosphatase activity.It contains both a uridine kinase (UK) domain and CYTH domain. TTM2 is involved in negative regulation defense response to pathogens (PMID:28733390).	Phosphoribulokinase / Uridine kinase family;(source:Araport11)
AT3G02375.1	novel_transcribed_region			novel transcribed region; detected in light-grown seedling;(source:Araport11)
AT1G67070.2	protein_coding		Encodes a protein with phosphomannose isomerase activity that is involved in synthesis of ascorbic acid. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene Primes expression pattern is responding to the level of sugar in the cell.	Mannose-6-phosphate isomerase, type I;(source:Araport11)
AT4G07040.1	long_noncoding_rna			None;(source:Araport11)
AT5G05125.1	long_noncoding_rna			None;(source:Araport11)
AT1G08507.1	long_noncoding_rna			None;(source:Araport11)
AT1G05860.3	protein_coding			INO80 complex subunit D-like protein;(source:Araport11)
AT5G60610.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G04290.2	protein_coding			Thioesterase superfamily protein;(source:Araport11)
AT4G35020.5	protein_coding		A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.	RAC-like 3;(source:Araport11)
AT4G35020.4	protein_coding		A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.	RAC-like 3;(source:Araport11)
AT5G08170.2	protein_coding			porphyromonas-type peptidyl-arginine deiminase family protein;(source:Araport11)
AT2G08915.2	antisense_rna			Natural antisense transcript overlaps with AT2G37970;(source:Araport11)
AT5G49150.5	protein_coding		Encodes a transmembrane domain containing protein expressed in sperm cells. Target promoter of the male germline-specific transcription factor DUO1.	gamete expressed 2;(source:Araport11)
AT4G14970.2	protein_coding		Encodes a protein that is required for  meiotic homologous recombination and acts in parallel to both MUTS HOMOLOG 4 (AtMSH4), known for its role in promoting interfering cross-overs (COs) and MMS AND UV SENSITIVE 81 (AtMUS81), known for its role in the formation of non-interfering COs.	fanconi anemia group D2 protein;(source:Araport11)
AT4G14970.3	protein_coding		Encodes a protein that is required for  meiotic homologous recombination and acts in parallel to both MUTS HOMOLOG 4 (AtMSH4), known for its role in promoting interfering cross-overs (COs) and MMS AND UV SENSITIVE 81 (AtMUS81), known for its role in the formation of non-interfering COs.	fanconi anemia group D2 protein;(source:Araport11)
AT4G14970.4	protein_coding		Encodes a protein that is required for  meiotic homologous recombination and acts in parallel to both MUTS HOMOLOG 4 (AtMSH4), known for its role in promoting interfering cross-overs (COs) and MMS AND UV SENSITIVE 81 (AtMUS81), known for its role in the formation of non-interfering COs.	fanconi anemia group D2 protein;(source:Araport11)
AT4G14970.5	protein_coding		Encodes a protein that is required for  meiotic homologous recombination and acts in parallel to both MUTS HOMOLOG 4 (AtMSH4), known for its role in promoting interfering cross-overs (COs) and MMS AND UV SENSITIVE 81 (AtMUS81), known for its role in the formation of non-interfering COs.	fanconi anemia group D2 protein;(source:Araport11)
AT4G14970.6	protein_coding		Encodes a protein that is required for  meiotic homologous recombination and acts in parallel to both MUTS HOMOLOG 4 (AtMSH4), known for its role in promoting interfering cross-overs (COs) and MMS AND UV SENSITIVE 81 (AtMUS81), known for its role in the formation of non-interfering COs.	fanconi anemia group D2 protein;(source:Araport11)
AT4G07235.1	long_noncoding_rna			None;(source:Araport11)
AT2G41355.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G30740.15	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G10920.4	protein_coding		Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family.  Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.	NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT1G10920.5	protein_coding		Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family.  Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.	NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT4G35030.8	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G10920.3	protein_coding		Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family.  Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.	NB-ARC domain-containing disease resistance protein;(source:Araport11)
AT4G35030.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G35030.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G35030.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G35030.7	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G21710.2	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT2G21710.3	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT3G27997.2	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT3G27997.3	pseudogene			pseudogene of expressed protein;(source:Araport11)
AT1G08453.1	long_noncoding_rna			None;(source:Araport11)
AT1G04157.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G03090;(source:Araport11)
AT1G07823.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G52580;(source:Araport11)
AT4G17310.14	protein_coding			hypothetical protein;(source:Araport11)
AT1G07520.3	protein_coding			GRAS family transcription factor;(source:Araport11)
AT2G34010.2	protein_coding			verprolin;(source:Araport11)
AT1G61280.2	protein_coding			Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit;(source:Araport11)
AT1G06507.1	long_noncoding_rna			None;(source:Araport11)
AT4G05185.1	novel_transcribed_region			novel transcribed region; detected in;(source:Araport11)
AT5G03945.1	long_noncoding_rna			None;(source:Araport11)
AT5G08380.2	protein_coding			alpha-galactosidase 1;(source:Araport11)
AT3G24518.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G24520;(source:Araport11)
AT5G48340.4	protein_coding			hypothetical protein;(source:Araport11)
AT5G48340.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G34224.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G24518.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G24520;(source:Araport11)
AT2G20250.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G06450.1	long_noncoding_rna			None;(source:Araport11)
AT5G02390.3	protein_coding		Target promoter of the male germline-specific transcription factor DUO1.	TRM32-like protein (DUF3741);(source:Araport11)
AT1G05037.1	long_noncoding_rna			None;(source:Araport11)
AT2G05045.1	long_noncoding_rna			None;(source:Araport11)
AT4G33160.2	protein_coding			F-box family protein;(source:Araport11)
AT1G68740.2	protein_coding		Encodes PHO1;H1, a member of the PHO1 family.  Involved in inorganic phosphate (Pi) transport and homeostasis.  Complements pho1 mutation. Its expression is responsive to both phosphate (Pi) and phosphite (Phi) in shoots.	EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT5G59660.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G14210.2	protein_coding		MADS box gene, transcription factor	AGAMOUS-like 44;(source:Araport11)
AT5G54440.2	protein_coding		Encodes a putative TRAPPII tethering factor required for cell plate assembly during cytokinesis. Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	CLUB;(source:Araport11)
AT5G55060.3	protein_coding			Rab3 GTPase-activating protein catalytic subunit;(source:Araport11)
AT3G55880.4	protein_coding		A gain-of-function mutant of SUE4 exhibited improved low sulphur tolerance.	Alpha/beta hydrolase related protein;(source:Araport11)
AT3G02135.1	long_noncoding_rna			None;(source:Araport11)
AT3G55880.3	protein_coding		A gain-of-function mutant of SUE4 exhibited improved low sulphur tolerance.	Alpha/beta hydrolase related protein;(source:Araport11)
AT4G18360.4	protein_coding		Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT4G03235.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G22010.2	protein_coding		Encodes RFC1, the largest subunit of replication factor C.  Mediates genomic stability and transcriptional gene silencing.	replication factor C1;(source:Araport11)
AT4G18360.3	protein_coding		Encodes a glycolate oxidase that modulates reactive oxygen species-mediated signal transduction during nonhost resistance.	Aldolase-type TIM barrel family protein;(source:Araport11)
AT5G01665.1	long_noncoding_rna			None;(source:Araport11)
AT3G29830.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT3G09985.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G63490;(source:Araport11)
AT5G18610.3	protein_coding		Encodes a receptor-like cytoplasmic kinase that is an immediate downstream component of the chitin receptor CERK1 and contributes to the regulation of chitin-induced immunity.	Protein kinase superfamily protein;(source:Araport11)
AT4G25640.3	protein_coding		Encodes a multidrug and toxin efflux family transporter. Involved in flavonoid metabolism, affecting Root growth, seed development and germination, and pollen development, release and viability.	detoxifying efflux carrier 35;(source:Araport11)
AT5G17370.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G58750.2	protein_coding		Putative PRISE (progesterone 5&#946;-reductase and/or iridoid synthase-like 1,4-enone reductases).	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G12440.3	protein_coding			A20/AN1-like zinc finger family protein;(source:Araport11)
AT1G48420.3	protein_coding		Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3.  Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. There is conflicting evidence on its 1-aminocyclopropane-1-carboxylate deaminase activity. Involved in regulating ethylene levels.	D-cysteine desulfhydrase;(source:Araport11)
AT3G45870.4	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G04147.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G02860;(source:Araport11)
AT5G01605.1	long_noncoding_rna			None;(source:Araport11)
AT3G45870.5	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G47900.8	protein_coding			heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G13920.2	protein_coding			GRF zinc finger / Zinc knuckle protein;(source:Araport11)
AT4G18375.3	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT1G70820.2	protein_coding			phosphoglucomutase, putative / glucose phosphomutase;(source:Araport11)
AT4G02855.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G70360.2	protein_coding			F-box family protein;(source:Araport11)
AT1G05913.1	long_noncoding_rna			None;(source:Araport11)
AT5G66640.3	protein_coding			DA1-related protein 3;(source:Araport11)
AT2G46020.3	protein_coding		Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.	transcription regulatory protein SNF2;(source:Araport11)
AT2G08045.1	long_noncoding_rna			None;(source:Araport11)
AT5G66640.6	protein_coding			DA1-related protein 3;(source:Araport11)
AT5G66640.7	protein_coding			DA1-related protein 3;(source:Araport11)
AT5G66640.4	protein_coding			DA1-related protein 3;(source:Araport11)
AT5G66640.5	protein_coding			DA1-related protein 3;(source:Araport11)
AT4G25720.5	protein_coding		Encodes a protein with similarity to gamma-glutamylcyclotransferase that is involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Some pathogenesis related proteins may be modified in this matter. In vitro the enzyme (using a protein that does not match AT4G25720.1, AT4G25720.2, or AT4G25720.3)  works on a broad range of synthetic peptides, but shows some preference for substrates that have a hydrophobic residues adjacent to the glutamine. It can also act on a N-terminal glutamic residue in a synthetic substrate (Schilling 2007). It does not appear to have the ability to transform GSH or gamma-glutamyl cysteine to 5-oxoproline (Okhama-Ohtsu 2008). This protein is predicted to enter the secretory pathway. When it is expressed in a heterologous system, two glycosylated forms of the protein can be detected.	glutaminyl cyclase;(source:Araport11)
AT4G25720.4	protein_coding		Encodes a protein with similarity to gamma-glutamylcyclotransferase that is involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Some pathogenesis related proteins may be modified in this matter. In vitro the enzyme (using a protein that does not match AT4G25720.1, AT4G25720.2, or AT4G25720.3)  works on a broad range of synthetic peptides, but shows some preference for substrates that have a hydrophobic residues adjacent to the glutamine. It can also act on a N-terminal glutamic residue in a synthetic substrate (Schilling 2007). It does not appear to have the ability to transform GSH or gamma-glutamyl cysteine to 5-oxoproline (Okhama-Ohtsu 2008). This protein is predicted to enter the secretory pathway. When it is expressed in a heterologous system, two glycosylated forms of the protein can be detected.	glutaminyl cyclase;(source:Araport11)
AT5G46150.3	protein_coding			LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein;(source:Araport11)
AT3G06255.1	long_noncoding_rna			None;(source:Araport11)
AT5G50670.2	protein_coding			Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein;(source:Araport11)
AT3G04815.1	long_noncoding_rna			None;(source:Araport11)
AT2G44250.2	protein_coding			tRNA-splicing ligase, putative (DUF239);(source:Araport11)
AT5G38000.2	protein_coding			Zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G45580.2	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT5G45580.3	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT3G45870.3	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G27595.2	protein_coding		Encodes a protein of unknown function containing a Symplekin C domain that is involved in negative regulation of glucose response. Mutants show increased sensitivity to glucose with a variety of assays.	symplekin;(source:Araport11)
AT2G14520.3	protein_coding			CBS domain protein (DUF21);(source:Araport11)
AT4G36060.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G24681.2	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT1G62850.4	protein_coding			Class I peptide chain release factor;(source:Araport11)
AT5G08395.1	long_noncoding_rna			None;(source:Araport11)
AT1G74330.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G05225.1	long_noncoding_rna			None;(source:Araport11)
AT5G60870.4	protein_coding		Encodes a mitochondrial protein RUG3 that is required for accumulation of mitochondrial respiratory chain complex I. RUG3 is related to human REGULATOR OF CHROMOSOME CONDENSATION 1 (RCC1) and Arabidopsis UV-B RESISTANCE 8 (UVR8).	Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT2G09755.1	long_noncoding_rna			None;(source:Araport11)
AT5G24910.2	protein_coding		Member of CYP714A. Encodes one of the two tandemly duplicated gene pair ELA1 (CYP714A1) and ELA2 (CYP714A2), homologs of the rice cytochrome P450 monooxygenase gene EUI1. Double mutation of ELA1 and ELA2 results in increased biomass and enlarged organs.	cytochrome P450, family 714, subfamily A, polypeptide 1;(source:Araport11)
AT1G75430.2	protein_coding			BEL1-like homeodomain 11;(source:Araport11)
AT5G04380.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G04380.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G54953.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G08085.1	long_noncoding_rna			None;(source:Araport11)
AT3G59730.2	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT5G09105.1	long_noncoding_rna			None;(source:Araport11)
AT2G05315.1	pre_trna			pre-tRNA tRNA-Phe (anticodon: GAA);(source:Araport11, TAIR10)
AT1G68185.3	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT3G30841.2	protein_coding			Cofactor-independent phosphoglycerate mutase;(source:Araport11)
AT5G45240.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT3G57300.3	protein_coding		Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family that has been shown to interact with H2A.Z and facilitates the enrichment of H2A.Z at the ends of the flowering repressor genes FLC and MAF4/5.  Functions as a positive regulator of DNA homologous recombination (HR) and plays a crucial role in genome stability maintenance.  In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type.   Plants mutated in INO80 display a pleiotropic phenotype including smaller plant and organ size, and late flowering but are not more sensitive to genotoxic agents or less efficient at T-DNA integration. INO80 has also been shown to regulate a subset of the Arabidopsis transcriptome.	DNA helicase INO80-like protein;(source:Araport11)
AT3G08475.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G55320;(source:Araport11)
AT3G57300.4	protein_coding		Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family that has been shown to interact with H2A.Z and facilitates the enrichment of H2A.Z at the ends of the flowering repressor genes FLC and MAF4/5.  Functions as a positive regulator of DNA homologous recombination (HR) and plays a crucial role in genome stability maintenance.  In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type.   Plants mutated in INO80 display a pleiotropic phenotype including smaller plant and organ size, and late flowering but are not more sensitive to genotoxic agents or less efficient at T-DNA integration. INO80 has also been shown to regulate a subset of the Arabidopsis transcriptome.	DNA helicase INO80-like protein;(source:Araport11)
AT2G09370.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42330;(source:Araport11)
AT2G02080.4	protein_coding		C2H2 BIRD transcription factor family.	indeterminate(ID)-domain 4;(source:Araport11)
AT1G48400.2	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT4G17243.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G42330.3	protein_coding			GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein;(source:Araport11)
AT2G26280.4	protein_coding		smr (Small MutS Related) domain-containing protein	CTC-interacting domain 7;(source:Araport11)
AT2G26280.7	protein_coding		smr (Small MutS Related) domain-containing protein	CTC-interacting domain 7;(source:Araport11)
AT2G26280.6	protein_coding		smr (Small MutS Related) domain-containing protein	CTC-interacting domain 7;(source:Araport11)
AT2G26280.3	protein_coding		smr (Small MutS Related) domain-containing protein	CTC-interacting domain 7;(source:Araport11)
AT2G26280.2	protein_coding		smr (Small MutS Related) domain-containing protein	CTC-interacting domain 7;(source:Araport11)
AT3G57040.2	protein_coding		response regulator ARR9, A two-component response regulator-like protein with a receiver domain with a conserved aspartate residue and a possible phosphorylation site and at the N-terminal half. Appears to interact with histidine kinase like genes ATHP3 and ATHP2	response regulator 9;(source:Araport11)
AT3G08495.1	long_noncoding_rna			None;(source:Araport11)
AT5G19221.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G19220;(source:Araport11)
AT4G32980.2	protein_coding		Encodes transcription factor involved in photomorphogenesis.  Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the  C24 accession. Most remarkably, ectopically expressed  ATH1 hardly had an effect on flowering time in the Col-0  and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.	homeobox protein ATH1;(source:Araport11)
AT1G48030.5	protein_coding		Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light.	mitochondrial lipoamide dehydrogenase 1;(source:Araport11)
AT1G05830.3	protein_coding		Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.	trithorax-like protein 2;(source:Araport11)
AT5G17710.3	protein_coding		Chloroplast GrpE protein involved in chloroplastic response to heat stress and the correct oligomerization of the photosynthesis-related LHCII complex.	Co-chaperone GrpE family protein;(source:Araport11)
AT1G05907.1	small_nucleolar_rna			None;(source:Araport11)
AT4G01995.3	protein_coding			beta-carotene isomerase D27;(source:Araport11)
AT4G01995.2	protein_coding			beta-carotene isomerase D27;(source:Araport11)
AT5G09690.14	protein_coding		Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT3G26280.2	protein_coding		cytochrome P450 monooxygenase	cytochrome P450, family 71, subfamily B, polypeptide 4;(source:Araport11)
AT4G00695.5	protein_coding			Spc97/Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT5G09690.11	protein_coding		Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT5G09690.12	protein_coding		Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT5G09690.13	protein_coding		Transmembrane magnesium transporter. One of nine family members. Loss of function mutants exhibit poor growth under magnesium stress conditions. Splice variant AT5G09690.1  (386 aa) is a functional transporter while AT5G09690.4 (371 aa) does not have transporter activity.	magnesium transporter 7;(source:Araport11)
AT2G13555.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G24200.2	protein_coding			Transcription elongation factor (TFIIS) family protein;(source:Araport11)
AT5G57565.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G57565.7	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G03525.1	long_noncoding_rna			None;(source:Araport11)
AT1G80150.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G54340.2	protein_coding		NADP-specific isocitrate dehydrogenase (ICDH)The mRNA is cell-to-cell mobile.	isocitrate dehydrogenase;(source:Araport11)
AT1G06220.3	protein_coding		Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS.The mRNA is cell-to-cell mobile.	Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT1G09753.1	long_noncoding_rna			None;(source:Araport11)
AT2G38160.6	protein_coding			hypothetical protein;(source:Araport11)
AT5G26920.3	protein_coding		Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g).  The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants.  cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.	Cam-binding protein 60-like G;(source:Araport11)
AT1G06277.1	small_nucleolar_rna			None;(source:Araport11)
AT5G03235.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G20900;(source:Araport11)
AT3G13430.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G11580.5	protein_coding		SOD7 encodes nuclear localized B3 DNA binding domain and a transcriptional repression motif. Belongs to the RAV gene family. Functions in regulation of seed size and binds to and represses KLU. Transcription repressor involved in regulation of inflorescence architecture.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G11580.4	protein_coding		SOD7 encodes nuclear localized B3 DNA binding domain and a transcriptional repression motif. Belongs to the RAV gene family. Functions in regulation of seed size and binds to and represses KLU. Transcription repressor involved in regulation of inflorescence architecture.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G11580.3	protein_coding		SOD7 encodes nuclear localized B3 DNA binding domain and a transcriptional repression motif. Belongs to the RAV gene family. Functions in regulation of seed size and binds to and represses KLU. Transcription repressor involved in regulation of inflorescence architecture.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT2G08560.1	long_noncoding_rna			None;(source:Araport11)
AT3G25570.uORF1-1	uORF			Derives_from AT3G25570;(source:Araport11)
AT1G04813.1	long_noncoding_rna			None;(source:Araport11)
AT3G03105.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G15353;(source:Araport11)
AT1G53360.2	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT5G52980.2	protein_coding			ER-based factor for assembly of V-ATPase;(source:Araport11)
AT3G50430.2	protein_coding			golgin;(source:Araport11)
AT4G06330.1	long_noncoding_rna			None;(source:Araport11)
AT5G43660.2	protein_coding		Belongs to the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteins and contains an oxoglutarate/iron-dependent oxygenase domain (InterPro:IPR005123) of the prolyl 4-hydroxylase, alpha subunit subtype (P4Hc; InterPro:IPR006620).	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G59970.2	protein_coding			Histone superfamily protein;(source:Araport11)
AT1G73650.5	protein_coding			3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295);(source:Araport11)
AT1G04050.3	protein_coding		Encodes SUVR1, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	histone-lysine N-methyltransferase SUVR2-like protein;(source:Araport11)
AT1G04050.2	protein_coding		Encodes SUVR1, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	histone-lysine N-methyltransferase SUVR2-like protein;(source:Araport11)
AT3G02170.2	protein_coding		Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction.  The LNG2 homologue LNG1 (At5g15580) has similar function.	longifolia2;(source:Araport11)
AT3G46735.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G09477.1	long_noncoding_rna			None;(source:Araport11)
AT1G60200.2	protein_coding		RMB25 is an alternative splicing factor involved in mediation of abiotic stress response and ABA response. Its expression is modulated by a variety of stressors and it in turn appears to affect the ratio of splice variants of stress responsive genes such as HAB1.2/HAB1.1.	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT3G14870.5	protein_coding			hypothetical protein (DUF641);(source:Araport11)
AT1G60200.4	protein_coding		RMB25 is an alternative splicing factor involved in mediation of abiotic stress response and ABA response. Its expression is modulated by a variety of stressors and it in turn appears to affect the ratio of splice variants of stress responsive genes such as HAB1.2/HAB1.1.	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT2G30170.6	protein_coding		Encodes a chloroplast PP2C phosphatase that is required for efficient dephosphorylation of PSII proteins and involved in light acclimation.	Protein phosphatase 2C family protein;(source:Araport11)
AT5G54043.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G09775.1	long_noncoding_rna			None;(source:Araport11)
AT4G00955.2	protein_coding			wall-associated receptor kinase-like protein;(source:Araport11)
AT4G31480.8	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT5G03660.3	protein_coding			transcriptional activator (DUF662);(source:Araport11)
AT1G61560.9	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT3G09390.2	protein_coding		metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage	metallothionein 2A;(source:Araport11)
AT4G29330.2	protein_coding			DERLIN-1;(source:Araport11)
AT1G06253.1	small_nucleolar_rna			None;(source:Araport11)
AT3G07065.1	miRNA_primary_transcript			microRNA ath-MIR8165 precursor;(source:Araport11)
AT5G05555.1	long_noncoding_rna			None;(source:Araport11)
AT5G58320.4	protein_coding		Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the tonoplast membrane. It is expressed in the epidermis of the root meristem and the early expansion zone.	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT5G58320.5	protein_coding		Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the tonoplast membrane. It is expressed in the epidermis of the root meristem and the early expansion zone.	Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT3G05705.1	long_noncoding_rna			None;(source:Araport11)
AT1G06710.18	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G17780.6	protein_coding		ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	transmembrane protein;(source:Araport11)
AT3G16260.3	protein_coding		Encodes a tRNase Z.The mRNA is cell-to-cell mobile.	tRNAse Z4;(source:Araport11)
AT3G16260.2	protein_coding		Encodes a tRNase Z.The mRNA is cell-to-cell mobile.	tRNAse Z4;(source:Araport11)
AT4G26010.2	protein_coding			Peroxidase superfamily protein;(source:Araport11)
AT5G43630.4	protein_coding		Encodes a zinc knuckle protein that negatively regulates morning specific growth. The role of TZP in hypocotyl elongation was established through a QTL analysis of BayXSha RIL populations. The Bay-0 allele contains a deletion causing a frameshift mutation. TZP is under circadian control and acts to regulate morning-specific hypocotyl growth.The mRNA is cell-to-cell mobile. Gene ontology analysis of common promoter targets suggests an active role in the transcriptional regulation of gene expression in response to environmental, biotic, abiotic, and endogenous stimuli. Promoter regions show a huge over-representation in proteins involved in transcription, clock, flowering, and light signaling components, reflecting its involvement in regulating gene expression in response to environmental stimuli such as light and temperature. Coassociates with and regulates the expression of light-regulated loci as well as transcriptional regulators to shape plant development in response to environmental stimuli. Requires, at least in part, ZFHD10 for function with regard to blue-light-regulated hypocotyl elongation.	zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT1G07633.1	miRNA_primary_transcript			microRNA ath-MIR5663 precursor;(source:Araport11)
AT3G03465.1	long_noncoding_rna			None;(source:Araport11)
AT3G13040.3	protein_coding			myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT3G07470.3	protein_coding			transmembrane protein, putative (Protein of unknown function, DUF538);(source:Araport11)
AT1G33540.2	protein_coding			serine carboxypeptidase-like 18;(source:Araport11)
AT2G05530.2	protein_coding			Glycine-rich protein family;(source:Araport11)
AT1G48175.4	protein_coding			Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT1G07617.1	long_noncoding_rna			None;(source:Araport11)
AT5G61190.8	protein_coding			putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein;(source:Araport11)
AT3G26680.4	protein_coding		involved in a SNM-dependent recombinational  repair process of oxidatively induced DNA damage.	DNA repair metallo-beta-lactamase family protein;(source:Araport11)
AT5G03640.2	protein_coding		AGCVIII kinase involved in the pulse-induced first positive phototropism.	Protein kinase superfamily protein;(source:Araport11)
AT5G10946.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G32350.2	protein_coding			alternative oxidase 1D;(source:Araport11)
AT5G35688.2	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	zinc metalloproteinase-like protein;(source:Araport11)
AT1G08413.1	long_noncoding_rna			None;(source:Araport11)
AT4G06945.1	long_noncoding_rna			None;(source:Araport11)
AT5G66560.3	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G24040.3	protein_coding			F-box SKIP23-like protein (DUF295);(source:Araport11)
AT3G07530.5	protein_coding			integrator complex subunit;(source:Araport11)
AT3G07530.4	protein_coding			integrator complex subunit;(source:Araport11)
AT3G07530.3	protein_coding			integrator complex subunit;(source:Araport11)
AT3G07530.2	protein_coding			integrator complex subunit;(source:Araport11)
AT5G66560.4	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G19800.6	protein_coding		Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane.  Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	trigalactosyldiacylglycerol 1;(source:Araport11)
AT4G11610.2	protein_coding			C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT1G19800.4	protein_coding		Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane.  Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	trigalactosyldiacylglycerol 1;(source:Araport11)
AT1G19800.5	protein_coding		Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane.  Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.	trigalactosyldiacylglycerol 1;(source:Araport11)
AT1G08443.1	long_noncoding_rna			None;(source:Araport11)
AT4G16566.3	protein_coding		Encodes a protein that has an unexpected bifunctional capability in vitro. The purified enzyme has  adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) and ADP-sulfurylase activity (E.C. 2.7.7.5). The latter is activated at low pH. The enzyme can exert it phosphorylase activity on a range of related substrates in vitro, but it acts best with APS (adenosine 5 Prime-phsophosulfate). This protein appears to function as a homodimer.	histidine triad nucleotide-binding 4;(source:Araport11)
AT2G09620.1	long_noncoding_rna			None;(source:Araport11)
AT1G48175.2	protein_coding			Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT5G64520.11	protein_coding		Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.	homolog of X-ray repair cross complementing 2 (XRCC2);(source:Araport11)
AT5G51690.2	protein_coding		Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity.	1-amino-cyclopropane-1-carboxylate synthase 12;(source:Araport11)
AT5G24060.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G07550.3	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT3G04625.1	long_noncoding_rna			None;(source:Araport11)
AT1G05870.9	protein_coding			hypothetical protein (DUF1685);(source:Araport11)
AT1G02080.3	protein_coding		Acts as scaffold protein in the CCR4-NOT complex, by interacting with various NOT proteins and CAF1.	transcription regulator;(source:Araport11)
AT5G24215.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G09710.3	protein_coding		Paralog of DRMY1 with unknown function.	Homeodomain-like superfamily protein;(source:Araport11)
AT2G09210.1	long_noncoding_rna			None;(source:Araport11)
AT5G22420.6	protein_coding			fatty acid reductase 7;(source:Araport11)
AT2G21520.3	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT4G09185.1	long_noncoding_rna			None;(source:Araport11)
AT3G43920.4	protein_coding		Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.	dicer-like 3;(source:Araport11)
AT5G57300.4	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G06393.1	long_noncoding_rna			None;(source:Araport11)
AT1G04387.1	long_noncoding_rna			None;(source:Araport11)
AT3G43920.6	protein_coding		Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.	dicer-like 3;(source:Araport11)
AT5G02275.1	long_noncoding_rna			None;(source:Araport11)
AT1G22110.2	protein_coding			structural constituent of ribosome;(source:Araport11)
AT5G04255.1	miRNA_primary_transcript			microRNA ath-MIR8177 precursor;(source:Araport11)
AT1G22110.3	protein_coding			structural constituent of ribosome;(source:Araport11)
AT2G06795.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G16910;(source:Araport11)
AT4G07080.1	miRNA_primary_transcript			microRNA ath-MIR8176 precursor;(source:Araport11)
AT4G02005.5	other_rna			None;(source:Araport11)
AT1G25370.2	protein_coding			hypothetical protein (DUF1639);(source:Araport11)
AT1G23700.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G23700.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G04365.1	long_noncoding_rna			None;(source:Araport11)
AT1G59723.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G65390.3	protein_coding		Phloem Protein2 family gene encoding a two-domain protein containing predicted lectin and Toll/Interleukin-1 receptor domains, which is induced upon spider mite attack and improves the ability to defend against T. urticae by participating in the tight regulation of hormonal cross talk upon mite feeding.	phloem protein 2 A5;(source:Araport11)
AT2G25420.3	protein_coding			transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT2G25420.4	protein_coding			transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT3G27925.2	protein_coding		Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen.  Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.The mRNA is cell-to-cell mobile.	DegP protease 1;(source:Araport11)
AT5G08155.1	novel_transcribed_region			novel transcribed region; detected in root, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT5G59490.2	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G04680.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT5G04680.3	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT5G04595.1	long_noncoding_rna			None;(source:Araport11)
AT4G06975.1	long_noncoding_rna			None;(source:Araport11)
AT5G04680.4	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT4G35985.2	protein_coding			Senescence/dehydration-associated protein-like protein;(source:Araport11)
AT3G02505.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G12480;(source:Araport11)
AT2G25890.2	protein_coding			Oleosin family protein;(source:Araport11)
AT3G45190.2	protein_coding			SIT4 phosphatase-associated family protein;(source:Araport11)
AT4G18215.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G08350.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G29530;(source:Araport11)
AT1G51840.4	protein_coding			kinase-like protein;(source:Araport11)
AT1G51840.5	protein_coding			kinase-like protein;(source:Araport11)
AT1G51840.2	protein_coding			kinase-like protein;(source:Araport11)
AT1G51840.3	protein_coding			kinase-like protein;(source:Araport11)
AT2G08280.1	long_noncoding_rna			None;(source:Araport11)
AT3G04935.1	long_noncoding_rna			None;(source:Araport11)
AT4G10470.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G59350.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G59350.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G59350.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G27475.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G03115.3	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G03115.2	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G03115.6	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT2G46250.2	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT3G01735.1	long_noncoding_rna			None;(source:Araport11)
AT4G01880.2	protein_coding			methyltransferase;(source:Araport11)
AT4G01880.3	protein_coding			methyltransferase;(source:Araport11)
AT3G43610.2	protein_coding			Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT3G43610.3	protein_coding			Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT3G20650.3	protein_coding			mRNA capping enzyme family protein;(source:Araport11)
AT1G80190.6	protein_coding		Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.	partner of SLD five 1;(source:Araport11)
AT3G30739.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G63240.2	protein_coding			DNAse I-like superfamily protein;(source:Araport11)
AT3G60975.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G49230.2	protein_coding		Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction.	Drought-responsive family protein;(source:Araport11)
AT3G58415.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G03550.6	protein_coding			Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT3G16230.7	protein_coding			Putative eukaryotic LigT;(source:Araport11)
AT5G61190.2	protein_coding			putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein;(source:Araport11)
AT1G75670.3	protein_coding			DNA-directed RNA polymerase;(source:Araport11)
AT1G01520.4	protein_coding		RVE3 is one of eleven homologous MYB-like transcription factors in Arabidopsis and a member of the RVE8 clade. Plays a minor role in clock regulation.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G01520.5	protein_coding		RVE3 is one of eleven homologous MYB-like transcription factors in Arabidopsis and a member of the RVE8 clade. Plays a minor role in clock regulation.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G61440.3	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61440.2	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT5G00710.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00870.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G24150.2	protein_coding		Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin.	formin homologue 4;(source:Araport11)
AT3G60350.2	protein_coding		ARABIDILLO-2 and its homolog, ARABIDILLO -1, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-2 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-2-overexpressing lines produce more lateral roots than wild-type seedlings.	ARABIDILLO-2;(source:Araport11)
AT5G51630.5	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G15430.2	protein_coding			Plant calmodulin-binding protein-like protein;(source:Araport11)
AT1G63990.2	protein_coding		Encodes AtSPO11-2, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA).  Required for meiotic recombination.  Plants homozygous for atspo11-2 exhibit a severe sterility phenotype.  Both male and female meiosis are severely disrupted in the atspo11-2 mutant, and this is associated with severe defects in synapsis during the first meiotic division and reduced meiotic recombination.  AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. Required for double-strand break induction.	sporulation 11-2;(source:Araport11)
AT3G01710.3	protein_coding			TPX2 (targeting protein for Xklp2) protein family;(source:Araport11)
AT5G20320.3	protein_coding		Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling.  It binds DRB4, a ds-RNA binding protein.	dicer-like 4;(source:Araport11)
AT2G03250.2	protein_coding			EXS (ERD1/XPR1/SYG1) family protein;(source:Araport11)
AT1G06603.1	long_noncoding_rna			None;(source:Araport11)
AT4G06195.1	long_noncoding_rna			None;(source:Araport11)
AT2G46640.4	protein_coding		Encodes TAC1 (Tiller Angle Control 1). Influences axillary branch growth angle. Inflorescence stems of TAC1 mutants are vertically oriented and have axillary shoots with narrow branch angles.	NAD-dependent protein deacetylase HST1-like protein;(source:Araport11)
AT2G09955.1	long_noncoding_rna			None;(source:Araport11)
AT1G07167.1	long_noncoding_rna			None;(source:Araport11)
AT5G01105.1	long_noncoding_rna			None;(source:Araport11)
AT5G57190.2	protein_coding		Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast.	phosphatidylserine decarboxylase 2;(source:Araport11)
AT1G05570.3	protein_coding		Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.	callose synthase 1;(source:Araport11)
AT5G07630.2	protein_coding			lipid transporter;(source:Araport11)
AT5G62710.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G03550.4	protein_coding			Secretory carrier membrane protein (SCAMP) family protein;(source:Araport11)
AT3G16230.5	protein_coding			Putative eukaryotic LigT;(source:Araport11)
AT1G71360.2	protein_coding		Encodes a member of the mid-SUN subfamily of SUN-domain proteins that is localized to both the nuclear envelope and the ER.  It is involved in early seed development and nuclear morphology.	Galactose-binding protein;(source:Araport11)
AT2G07355.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G20900;(source:Araport11)
AT5G65690.2	protein_coding		Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).The mRNA is cell-to-cell mobile.	phosphoenolpyruvate carboxykinase 2;(source:Araport11)
AT5G65690.3	protein_coding		Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).The mRNA is cell-to-cell mobile.	phosphoenolpyruvate carboxykinase 2;(source:Araport11)
AT5G65690.4	protein_coding		Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).The mRNA is cell-to-cell mobile.	phosphoenolpyruvate carboxykinase 2;(source:Araport11)
AT1G08820.3	protein_coding		Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.	vamp/synaptobrevin-associated protein 27-2;(source:Araport11)
AT5G14275.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G06515.1	long_noncoding_rna			None;(source:Araport11)
AT3G33528.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G00550.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G38545.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G38530 and AT4G38540;(source:Araport11)
AT5G08805.1	small_nucleolar_rna			None;(source:Araport11)
AT1G09003.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G68640;(source:Araport11)
AT2G03670.2	protein_coding		CDC48 - like protein  AAA-type ATPaseCell. division control protein 48 homolog B	cell division cycle 48B;(source:Araport11)
AT3G23410.2	protein_coding		Encodes a fatty alcohol oxidase.	fatty alcohol oxidase 3;(source:Araport11)
AT2G45870.3	protein_coding		Encodes a bestrophin-like protein (Best2). Minor isoform (10% transcript of AtBest1). Putative chloride ion channel. Proposed to modulate proton motive force partitioning by mediating chloride ion influx in the thylakoid lumen.	Bestrophin-like protein;(source:Araport11)
AT4G20320.4	protein_coding		Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT4G20320.5	protein_coding		Cytidine triphosphate synthase.	CTP synthase family protein;(source:Araport11)
AT2G10921.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G10920;(source:Araport11)
AT5G24210.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G15060.2	protein_coding			FBD, F-box/LRR protein;(source:Araport11)
AT3G06640.2	protein_coding			PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT3G06640.3	protein_coding			PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT2G10921.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G10920;(source:Araport11)
AT2G10921.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G10920;(source:Araport11)
AT4G08590.5	protein_coding			ORTHRUS-like protein;(source:Araport11)
AT1G26225.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G03010.3	protein_coding			Peptidyl-tRNA hydrolase II (PTH2) family protein;(source:Araport11)
AT1G63770.7	protein_coding			Peptidase M1 family protein;(source:Araport11)
AT5G41220.2	protein_coding		Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase THETA 3;(source:Araport11)
AT3G08775.1	long_noncoding_rna			None;(source:Araport11)
AT3G14130.4	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G14130.3	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G14130.2	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G33528.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G09535.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G76020.3	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT1G76020.2	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT5G07705.1	long_noncoding_rna			None;(source:Araport11)
AT5G65450.2	protein_coding		Encodes a ubiquitin-specific protease.The mRNA is cell-to-cell mobile.	ubiquitin-specific protease 17;(source:Araport11)
AT5G01465.1	long_noncoding_rna			None;(source:Araport11)
AT4G23420.4	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G15040.2	protein_coding			Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT5G15040.3	protein_coding			Paired amphipathic helix (PAH2) superfamily protein;(source:Araport11)
AT1G48600.uORF1	uORF			Derives_from AT1G48600;(source:Araport11)
AT1G45201.3	protein_coding		Target of AtGRP7 regulation.	triacylglycerol lipase-like 1;(source:Araport11)
AT1G09887.1	long_noncoding_rna			None;(source:Araport11)
AT3G12730.2	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT1G11870.5	protein_coding		Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	Seryl-tRNA synthetase;(source:Araport11)
AT5G57060.4	protein_coding			60S ribosomal L18a-like protein;(source:Araport11)
AT5G43710.3	protein_coding			Glycosyl hydrolase family 47 protein;(source:Araport11)
AT2G02765.3	protein_coding			L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase;(source:Araport11)
AT4G05120.2	protein_coding		Encodes an equilibrative nucleoside transporter AtENT3.  Mutations of this locus allow mutants to grow on uridine analogue fluorouridine.	Major facilitator superfamily protein;(source:Araport11)
AT4G06240.1	small_nucleolar_rna			None;(source:Araport11)
AT1G23330.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G23420.5	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT3G03365.1	long_noncoding_rna			None;(source:Araport11)
AT2G22465.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G01435.4	protein_coding			Expressed protein;(source:Araport11)
AT3G62740.2	protein_coding			beta glucosidase 7;(source:Araport11)
AT1G69800.3	protein_coding			Cystathionine beta-synthase (CBS) protein;(source:Araport11)
AT4G32730.3	protein_coding		Encodes a putative c-myb-like transcription factor with three MYB repeats.	Homeodomain-like protein;(source:Araport11)
AT5G26150.2	protein_coding			protein kinase family protein;(source:Araport11)
AT4G02640.3	protein_coding		Encodes a basic leucine zipper (bZIP) transcription factor AtbZIP10.  AtbZIP10 shuttles between the nucleus and the cytoplasm.  It binds consensus G- and C-box DNA sequences.  AtbZIP10 acts antagonistically with LSD1 in both pathogen-induced hypersensitive response and basal defense responses.	bZIP transcription factor family protein;(source:Araport11)
AT3G08555.1	novel_transcribed_region			novel transcribed region; detected in root, receptacle;(source:Araport11)
AT2G05555.1	long_noncoding_rna			None;(source:Araport11)
AT3G59430.7	protein_coding			hypothetical protein;(source:Araport11)
AT2G37025.3	protein_coding			TRF-like 8;(source:Araport11)
AT3G00660.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G05230.10	protein_coding		Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes.  The mutations do not affect trichome growth or branch number.	homeodomain GLABROUS 2;(source:Araport11)
AT5G05550.3	protein_coding		Encodes trihelix-domain transcription factor VFP5. Interacts with agrobacterium virulence protein VirF.	sequence-specific DNA binding transcription factor;(source:Araport11)
AT3G08735.1	small_nuclear_rna			U2;(source:Araport11)
AT4G14770.3	protein_coding		Regulates fate transition and cell Divisions in the stomatal lineage.	TESMIN/TSO1-like CXC 2;(source:Araport11)
AT4G37409.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G05230.11	protein_coding		Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes.  The mutations do not affect trichome growth or branch number.	homeodomain GLABROUS 2;(source:Araport11)
AT4G37409.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G37409.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G09375.1	long_noncoding_rna			None;(source:Araport11)
AT4G31715.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G49210.2	protein_coding			O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT4G02660.3	protein_coding			Beige/BEACH and WD40 domain-containing protein;(source:Araport11)
AT4G32730.4	protein_coding		Encodes a putative c-myb-like transcription factor with three MYB repeats.	Homeodomain-like protein;(source:Araport11)
AT5G40580.4	protein_coding		Encodes 20S proteasome beta subunit PBB2 (PBB2).	20S proteasome beta subunit PBB2;(source:Araport11)
AT2G32280.2	protein_coding		Encodes a member of a plant-specific gene family that is required for embryo provasculature development.  The gene product regulates vascular network complexity and connectivity in cotyledons.	GPI inositol-deacylase C, putative (DUF1218);(source:Araport11)
AT4G32730.5	protein_coding		Encodes a putative c-myb-like transcription factor with three MYB repeats.	Homeodomain-like protein;(source:Araport11)
AT2G22930.2	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G10250.2	protein_coding		Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G51850.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G35560.2	protein_coding			DENN (AEX-3) domain-containing protein;(source:Araport11)
AT5G08125.1	other_rna			None;(source:Araport11)
AT1G34827.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G01920.4	protein_coding			SET domain-containing protein;(source:Araport11)
AT1G01920.5	protein_coding			SET domain-containing protein;(source:Araport11)
AT1G31540.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G71300.2	protein_coding			Vps52 / Sac2 family;(source:Araport11)
AT4G31410.3	protein_coding			E3 ubiquitin-protein ligase, putative (DUF1644);(source:Araport11)
AT1G08840.3	protein_coding		Encodes a homolog of human and yeast DNA2. Mutants have increased sensitivity to DNA damage stress.	DNA replication helicase;(source:Araport11)
AT1G08840.4	protein_coding		Encodes a homolog of human and yeast DNA2. Mutants have increased sensitivity to DNA damage stress.	DNA replication helicase;(source:Araport11)
AT1G08840.5	protein_coding		Encodes a homolog of human and yeast DNA2. Mutants have increased sensitivity to DNA damage stress.	DNA replication helicase;(source:Araport11)
AT1G17400.2	protein_coding		Protein of unknown function. Similar to LAZY1, a gene required or gravitropic response in shoots and roots. Involved in determining lateral root branch angle.	hypothetical protein;(source:Araport11)
AT1G22960.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G63120.2	protein_coding			cyclin p1;(source:Araport11)
AT3G01455.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling;(source:Araport11)
AT3G09080.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G03440.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT3G17350.2	protein_coding			wall-associated receptor kinase carboxy-terminal protein;(source:Araport11)
AT1G07243.1	miRNA_primary_transcript			microRNA ath-MIR5024 precursor;(source:Araport11)
AT1G70290.2	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.	trehalose-6-phosphatase synthase S8;(source:Araport11)
AT5G16190.4	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase like A11;(source:Araport11)
AT1G78690.5	protein_coding		Encodes a lysoglycerophospholipid O-acyltransferase that acylates 1-acyl lyso PE and 1-acyl lyso PG but not PE or PG.	Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT1G62600.2	protein_coding			Flavin-binding monooxygenase family protein;(source:Araport11)
AT1G05093.1	long_noncoding_rna			None;(source:Araport11)
AT5G16190.3	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase like A11;(source:Araport11)
AT5G16190.2	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase like A11;(source:Araport11)
AT3G48790.2	protein_coding			Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT1G06710.11	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G25600.4	protein_coding			Oxoglutarate/iron-dependent oxygenase;(source:Araport11)
AT5G11020.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G25600.2	protein_coding			Oxoglutarate/iron-dependent oxygenase;(source:Araport11)
AT4G25600.3	protein_coding			Oxoglutarate/iron-dependent oxygenase;(source:Araport11)
AT1G06710.16	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G06710.17	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G09475.1	other_rna			None;(source:Araport11)
AT5G00505.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00505.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G08290.1	long_noncoding_rna			None;(source:Araport11)
AT4G15563.5	protein_coding			F-box-like protein;(source:Araport11)
AT2G01035.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G09635.1	long_noncoding_rna			None;(source:Araport11)
AT2G11205.1	protein_coding			reverse transcriptase-like protein;(source:Araport11)
AT5G06935.1	long_noncoding_rna			None;(source:Araport11)
AT5G22730.3	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT5G06505.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G43440;(source:Araport11)
AT3G45750.5	protein_coding			Nucleotidyltransferase family protein;(source:Araport11)
AT1G08963.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G67950;(source:Araport11)
AT3G55600.2	protein_coding			Membrane fusion protein Use1;(source:Araport11)
AT3G07785.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G47580;(source:Araport11)
AT5G43460.2	protein_coding			HR-like lesion-inducing protein-like protein;(source:Araport11)
AT2G03975.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G01410;(source:Araport11)
AT5G03735.1	long_noncoding_rna			None;(source:Araport11)
AT1G09793.1	long_noncoding_rna			None;(source:Araport11)
AT4G08535.2	protein_coding			F-box SKIP17-like protein;(source:Araport11)
AT4G08535.3	protein_coding			F-box SKIP17-like protein;(source:Araport11)
AT4G10930.2	protein_coding			RING/U-box protein;(source:Araport11)
AT1G61575.2	protein_coding			Serine/Threonine kinase;(source:Araport11)
AT1G05183.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G15700;(source:Araport11)
AT3G06215.1	long_noncoding_rna			None;(source:Araport11)
AT1G01150.3	protein_coding			Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein;(source:Araport11)
AT1G01150.2	protein_coding			Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein;(source:Araport11)
AT3G00820.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G21903.3	protein_coding			MATE efflux family protein;(source:Araport11)
AT4G14245.1	protein_coding			structural constituent of ribosome protein;(source:Araport11)
AT1G09637.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G76700;(source:Araport11)
AT4G26600.5	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G27790.2	protein_coding			Calcium-binding EF hand family protein;(source:Araport11)
AT1G55915.3	protein_coding		DNA-protein crosslink repair protease. WSS1A is involved in DNA-protein crosslink (DPC) repair and acts in independent pathways of the nuclease MUS81 and the phosphodiesterase TDP1. WSS1A is involved in the repair of replicative DNA damage (determination of dead cells in the root meristem using propidium Iodide staining). CRISPR wss1A mutants are camptothecin (CPT) and cis-platin hypersensitive and exhibit a fasciated growth phenotype and shortened roots	zinc ion binding protein;(source:Araport11)
AT1G55915.2	protein_coding		DNA-protein crosslink repair protease. WSS1A is involved in DNA-protein crosslink (DPC) repair and acts in independent pathways of the nuclease MUS81 and the phosphodiesterase TDP1. WSS1A is involved in the repair of replicative DNA damage (determination of dead cells in the root meristem using propidium Iodide staining). CRISPR wss1A mutants are camptothecin (CPT) and cis-platin hypersensitive and exhibit a fasciated growth phenotype and shortened roots	zinc ion binding protein;(source:Araport11)
AT1G45229.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G55915.4	protein_coding		DNA-protein crosslink repair protease. WSS1A is involved in DNA-protein crosslink (DPC) repair and acts in independent pathways of the nuclease MUS81 and the phosphodiesterase TDP1. WSS1A is involved in the repair of replicative DNA damage (determination of dead cells in the root meristem using propidium Iodide staining). CRISPR wss1A mutants are camptothecin (CPT) and cis-platin hypersensitive and exhibit a fasciated growth phenotype and shortened roots	zinc ion binding protein;(source:Araport11)
AT4G07085.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G22370;(source:Araport11)
AT5G58610.2	protein_coding			PHD finger transcription factor;(source:Araport11)
AT1G17460.3	protein_coding		Arabidopsis thaliana myb family transcription factor (At1g17460)	TRF-like 3;(source:Araport11)
AT5G00470.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G02575.1	small_nucleolar_rna			None;(source:Araport11)
AT2G35738.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G35740;(source:Araport11)
AT4G21720.3	protein_coding			defensin-like protein;(source:Araport11)
AT4G23320.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 24;(source:Araport11)
AT4G23320.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 24;(source:Araport11)
AT4G08165.1	small_nucleolar_rna			None;(source:Araport11)
AT4G15320.2	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase-like B6;(source:Araport11)
AT3G61690.2	protein_coding		Putative TNAase	nucleotidyltransferase;(source:Araport11)
AT2G19260.2	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G58240.3	protein_coding		Encodes a Fhit protein. Has nucleoside phosphoramidase and adenylylsulfatase activities.	FRAGILE HISTIDINE TRIAD;(source:Araport11)
AT4G15320.4	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase-like B6;(source:Araport11)
AT4G15320.5	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase-like B6;(source:Araport11)
AT2G46480.4	protein_coding		Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase-like protein;(source:Araport11)
AT2G02148.4	protein_coding			PPR containing protein;(source:Araport11)
AT2G46480.3	protein_coding		Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase-like protein;(source:Araport11)
AT3G00770.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G23330.4	protein_coding			hypothetical protein;(source:Araport11)
AT5G45520.2	protein_coding			Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT4G02150.2	protein_coding		Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import.	ARM repeat superfamily protein;(source:Araport11)
AT1G27921.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G27920;(source:Araport11)
AT4G23330.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G09695.1	long_noncoding_rna			None;(source:Araport11)
AT5G37370.5	protein_coding		encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	PRP38 family protein;(source:Araport11)
AT4G15300.2	protein_coding			cytochrome P450, family 702, subfamily A, polypeptide 2;(source:Araport11)
AT4G15300.3	protein_coding			cytochrome P450, family 702, subfamily A, polypeptide 2;(source:Araport11)
AT4G09405.1	other_rna			None;(source:Araport11)
AT1G09883.1	small_nucleolar_rna			None;(source:Araport11)
AT5G49460.2	protein_coding		One of the two genes encoding subunit B of the cytosolic enzyme ATP Citrate Lyase (ACL)	ATP citrate lyase subunit B 2;(source:Araport11)
AT4G32820.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G25170.2	protein_coding			PPPDE putative thiol peptidase family protein;(source:Araport11)
AT2G09805.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G47170;(source:Araport11)
AT2G13650.4	protein_coding		Encodes a Golgi-localized GDP-mannose transporter.  It can transport ADP-glucose in vitro.	golgi nucleotide sugar transporter 1;(source:Araport11)
AT5G07400.3	protein_coding			forkhead-associated domain-containing protein / FHA domain-containing protein;(source:Araport11)
AT1G62305.3	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G37310.2	protein_coding			Endomembrane protein 70 protein family;(source:Araport11)
AT3G54740.4	protein_coding			zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT5G04280.5	protein_coding		Encodes one of the zinc finger-containing glycine-rich RNA-binding proteins involved in cold tolerance: AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b), AT5G04280 (AtRZ-1c).  It also, along with AtRZ-1b, plays important roles in plant development, pre- mRNA splicing, and general gene expression.	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT5G08885.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G58970;(source:Araport11)
AT3G14190.2	protein_coding		Encodes a 193 amino acid protein of unknown function. Contains a DEN-box (aa 14?16), a KEN-box, and the D-box (aa 46?54)and a third,  unknown domain (aa 81?97). Loss of function alleles are defective in meiosis and have reduced fertility. pans1 mutants show premature loss of cohesion of sister chromatids during meioisis I and meiosis II resulting in abnormal chromosome segregation and unbalanced tetrads.	hypothetical protein;(source:Araport11)
AT4G03395.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G21810.3	protein_coding		Encodes a protein that localizes at motile vesicle-like small compartments in differentiating xylem cells that is associated with microtubule plus-ends.  VETH-positive compartments are unlikely to be elements in conventional endomembrane trafficking pathways.  It can associate with COG2, and together these two proteins co-localize with the EXO70A1 exocyst subunit, tethering EXO70A1 to compartments associated with cortical microtubules.	filament-like protein (DUF869);(source:Araport11)
AT4G22590.uORF1	uORF			Derives_from AT4G22590;(source:Araport11)
AT4G27630.4	protein_coding		Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG2 binds to GPA1, the alpha subunit of the heterotrimeric G protein.  GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG2 and may act to down-regulate GTG2 binding to ABA. GTG2 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG2 transcript levels do not appear to change in response to ABA or abiotic stresses.	GPCR-type G protein 2;(source:Araport11)
AT2G26820.3	protein_coding			phloem protein 2-A3;(source:Araport11)
AT2G26820.2	protein_coding			phloem protein 2-A3;(source:Araport11)
AT2G29340.4	protein_coding			NAD-dependent epimerase/dehydratase family protein;(source:Araport11)
AT4G36380.2	protein_coding		Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).	Cytochrome P450 superfamily protein;(source:Araport11)
AT1G62200.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT4G27630.6	protein_coding		Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG2 binds to GPA1, the alpha subunit of the heterotrimeric G protein.  GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG2 and may act to down-regulate GTG2 binding to ABA. GTG2 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG2 transcript levels do not appear to change in response to ABA or abiotic stresses.	GPCR-type G protein 2;(source:Araport11)
AT2G47500.2	protein_coding			P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT2G00710.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G46500.3	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G46500.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G46500.5	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G46500.4	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G46500.7	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G08005.1	long_noncoding_rna			None;(source:Araport11)
AT3G46500.9	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G46500.8	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G61260.3	protein_coding			Plant calmodulin-binding protein-like protein;(source:Araport11)
AT5G07425.1	long_noncoding_rna			None;(source:Araport11)
AT5G12130.2	protein_coding			integral membrane TerC family protein;(source:Araport11)
AT3G01470.uORF1	uORF		Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF33 represents a conserved upstream opening reading frame relative to major ORF AT3G01470.1.  It regulates the translation of the main orf AtHB1.	Derives_from AT3G01470;(source:Araport11)
AT1G50670.2	protein_coding			OTU-like cysteine protease family protein;(source:Araport11)
AT2G00770.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G05895.1	long_noncoding_rna			None;(source:Araport11)
AT4G06220.2	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower;(source:Araport11)
AT4G06220.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower;(source:Araport11)
AT5G03825.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G24810;(source:Araport11)
AT1G08577.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G62840;(source:Araport11)
AT4G20870.2	protein_coding		encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.	fatty acid hydroxylase 2;(source:Araport11)
AT1G05630.3	protein_coding		Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3.  Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light?stimulated  increase in cytosolic calcium ion.	Endonuclease/exonuclease/phosphatase family protein;(source:Araport11)
AT3G02025.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G07600;(source:Araport11)
AT1G73730.2	protein_coding		Encodes a putative transcription factor involved in ethylene signalling.  Isolated DNA binding domain has been shown to bind DNA in vitro.	ETHYLENE-INSENSITIVE3-like 3;(source:Araport11)
AT2G31960.5	protein_coding		encodes a protein similar to callose synthase	glucan synthase-like 3;(source:Araport11)
AT1G18400.2	protein_coding		Encodes the brassinosteroid signaling component BEE1 (BR-ENHANCED EXPRESSION 1). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.	BR enhanced expression 1;(source:Araport11)
AT1G34844.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G34842;(source:Araport11)
AT2G27170.3	protein_coding		Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.	Structural maintenance of chromosomes (SMC) family protein;(source:Araport11)
AT2G27170.4	protein_coding		Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.	Structural maintenance of chromosomes (SMC) family protein;(source:Araport11)
AT1G09333.1	small_nucleolar_rna			None;(source:Araport11)
AT5G07835.1	long_noncoding_rna			None;(source:Araport11)
AT4G19985.7	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G04430.2	protein_coding			nudix hydrolase homolog 5;(source:Araport11)
AT4G19985.5	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT4G19985.4	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT4G19985.3	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G04233.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G03970;(source:Araport11)
AT3G25070.2	protein_coding		Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is  Primeguarded Prime by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved  by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the  plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation. Major virulence target of the TTSE HopF2Pto.The mRNA is cell-to-cell mobile.	RPM1 interacting protein 4;(source:Araport11)
AT3G24890.5	protein_coding		member of VAMP72 Gene Family	vesicle-associated membrane protein 728;(source:Araport11)
AT3G24890.4	protein_coding		member of VAMP72 Gene Family	vesicle-associated membrane protein 728;(source:Araport11)
AT3G00400.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G00400.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G09110.1	long_noncoding_rna			None;(source:Araport11)
AT2G08895.1	long_noncoding_rna			None;(source:Araport11)
AT1G06820.2	protein_coding		Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.	carotenoid isomerase;(source:Araport11)
AT4G15563.7	protein_coding			F-box-like protein;(source:Araport11)
AT5G03180.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G03215.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G16050;(source:Araport11)
AT3G05690.2	protein_coding		Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	nuclear factor Y, subunit A2;(source:Araport11)
AT2G37420.2	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT4G27830.2	protein_coding		Encodes a beta-glucosidase that may be responsible for acyl-glucose-dependent anthocyanin glucosyltransferase activity in Arabidopsis.  In vitro efforts to demonstrate AAGT activity for BGLU10 have been unsuccessful but experiments with mutants in this gene suggest at least an indirect involvement in anthocyanin formation.	beta glucosidase 10;(source:Araport11)
AT1G29270.2	protein_coding			transcription factor bHLH35-like protein;(source:Araport11)
AT1G09163.1	long_noncoding_rna			None;(source:Araport11)
AT5G09040.1	long_noncoding_rna			None;(source:Araport11)
AT4G18990.2	protein_coding			xyloglucan endotransglucosylase/hydrolase 29;(source:Araport11)
AT1G35420.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G04110.2	protein_coding		putative glutamate receptor (GLR1.1). Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.	glutamate receptor 1.1;(source:Araport11)
AT3G04110.3	protein_coding		putative glutamate receptor (GLR1.1). Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.	glutamate receptor 1.1;(source:Araport11)
AT1G32540.4	protein_coding		Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.	lsd one like 1;(source:Araport11)
AT1G32540.5	protein_coding		Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.	lsd one like 1;(source:Araport11)
AT1G32540.6	protein_coding		Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.	lsd one like 1;(source:Araport11)
AT1G32540.7	protein_coding		Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.	lsd one like 1;(source:Araport11)
AT1G01860.5	protein_coding		dimethyladenosine transferase	Ribosomal RNA adenine dimethylase family protein;(source:Araport11)
AT1G01860.4	protein_coding		dimethyladenosine transferase	Ribosomal RNA adenine dimethylase family protein;(source:Araport11)
AT2G37480.uORF1	uORF			Derives_from AT2G37480;(source:Araport11)
AT1G01860.3	protein_coding		dimethyladenosine transferase	Ribosomal RNA adenine dimethylase family protein;(source:Araport11)
AT1G01860.2	protein_coding		dimethyladenosine transferase	Ribosomal RNA adenine dimethylase family protein;(source:Araport11)
AT5G51130.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G18430.3	protein_coding			Calcium-binding EF-hand family protein;(source:Araport11)
AT3G02865.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen;(source:Araport11)
AT5G08495.1	small_nucleolar_rna			None;(source:Araport11)
AT5G51950.3	protein_coding			Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT2G08010.1	long_noncoding_rna			None;(source:Araport11)
AT5G61260.2	protein_coding			Plant calmodulin-binding protein-like protein;(source:Araport11)
AT1G13350.3	protein_coding		Paralog of PRP4KA.	Protein kinase superfamily protein;(source:Araport11)
AT2G20100.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G20100.4	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G05165.6	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G46500.6	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G07663.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G50660;(source:Araport11)
AT5G09635.1	long_noncoding_rna			None;(source:Araport11)
AT3G02340.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G27340.5	protein_coding			N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein;(source:Araport11)
AT2G08070.1	long_noncoding_rna			None;(source:Araport11)
AT1G73600.uORF1	uORF			Derives_from AT1G73600;(source:Araport11)
AT5G02085.1	long_noncoding_rna			None;(source:Araport11)
AT1G05500.2	protein_coding		Encodes a endomembrane-localized synaptotagmin.  Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT5G57240.5	protein_coding			OSBP(oxysterol binding protein)-related protein 4C;(source:Araport11)
AT5G47380.4	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT5G37500.4	protein_coding		Encodes a guard cell outward potassium channel.  Belongs to the Shaker family K+ channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500). Mutants have increased water consumption and limited stomatal closure in response to abscisic and jasmonic acids. It forms a heteromeric K(out) channels with SKOR. The gene is expressed ubiquitously in root and the vasculature and guard cells of leaves. Expression is suppressed during agrobacterium-induced tumor formation and increased in response to water deprivation and cold.	gated outwardly-rectifying K+ channel;(source:Araport11)
AT3G05145.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G27170;(source:Araport11)
AT2G41440.3	protein_coding			agamous-like MADS-box protein;(source:Araport11)
AT2G41440.4	protein_coding			agamous-like MADS-box protein;(source:Araport11)
AT5G16790.2	protein_coding		Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	Tho complex subunit 7/Mft1p;(source:Araport11)
AT1G70790.4	protein_coding		C2-domain ABA-related (CAR) protein, involved in the recruitment of ABA receptors to the plasma membrane to facilitate ABA signaling. Its stability and dynamic localization is regulated by LOT1.	Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT3G06245.1	long_noncoding_rna			None;(source:Araport11)
AT1G10395.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G33465.2	protein_coding		Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	SCR-like 22;(source:Araport11)
AT1G21410.2	protein_coding		AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1.  Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain.  Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis.  AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes.	F-box/RNI-like superfamily protein;(source:Araport11)
AT2G08910.1	small_nucleolar_rna			None;(source:Araport11)
AT4G19180.3	protein_coding		Encodes a putative apyrase involved in pollen exine pattern formation and anther dehiscence.	GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11)
AT2G04621.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G26300.2	protein_coding		Encodes an alpha subunit of a heterotrimeric GTP-binding protein. The active GTP-bound form of GPA1 binds to the GTG1 and GTG2 abscisic acid (ABA) receptors and appears to affect their GTPase and GTP-binding activity, and hence, ABA binding abilities. GPA1 is a positive regulator in ABA-mediated inhibition of stomatal opening. Plants with recessive mutant alleles have complex phenotypes including: reduced brassinolide response, reduced cell divisions, round leaves, short hypocotyls.  It is likely to be involved in the signaling events that trigger unfolded protein response-associated cell death. GPA1 is also involved in sugar signaling.The mRNA is cell-to-cell mobile.	G protein alpha subunit 1;(source:Araport11)
AT1G14970.2	protein_coding			O-fucosyltransferase family protein;(source:Araport11)
AT3G51880.5	protein_coding		Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain.  The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites.  The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.	high mobility group B1;(source:Araport11)
AT4G02740.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT5G05785.1	other_rna			None;(source:Araport11)
AT1G06153.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G28390;(source:Araport11)
AT1G68800.2	protein_coding		Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth. Transcription level and mutant phenotype are weaker than its homolog BRC1 (At3G18550).	TCP domain protein 12;(source:Araport11)
AT3G27510.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G15110.3	protein_coding		PSS1 encodes a base-exchange-type Phosphatidylserine (PS) synthase. Mutant analysis revealed its role in pollen maturation.	phosphatidyl serine synthase family protein;(source:Araport11)
AT3G12360.2	protein_coding		Encodes a protein with an ankyrin motif and transmembrane domains that is involved in salt tolerance. Expressed throughout the plant and localized to the plasma membrane. Loss of function mutations show an increased tolerance to salt based on assaying seedling growth in the presence of salt. In the mutants, induction of genes required for production of reactive oxygen species is reduced suggesting that itn1 promotes ROS production.  It interacts with RCN1 in vivo and may regulate its subcellular localization.The mRNA is cell-to-cell mobile.	Ankyrin repeat family protein;(source:Araport11)
AT5G00725.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G23380.2	protein_coding		encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Gene is expressed predominantly in inflorescence and flower tissue.	ROP-interactive CRIB motif-containing protein 5;(source:Araport11)
AT3G23380.3	protein_coding		encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Gene is expressed predominantly in inflorescence and flower tissue.	ROP-interactive CRIB motif-containing protein 5;(source:Araport11)
AT2G03530.5	protein_coding		Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.	ureide permease 2;(source:Araport11)
AT3G46540.3	protein_coding			ENTH/VHS family protein;(source:Araport11)
AT1G22150.2	protein_coding		sulfate transporter Sultr1;3	sulfate transporter 1;(source:Araport11)
AT5G22505.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G25195.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT2G46375.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G03530.3	protein_coding		Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.	ureide permease 2;(source:Araport11)
AT4G39120.2	protein_coding		Encodes a chloroplast-localized member of the myo-inositol monophosphatase family, IMPL2 (myo-Inositol monophosphatase like 2) that seems to have multiple enzymatic activities. It contributes to histidine biosynthesis based on it histidinol-phosphate phosphatase activity. In addition, the protein can act as an inositol monophosphatase and an L-galactose-1-phosphate phosphatase in vitro.	inositol monophosphatase family protein;(source:Araport11)
AT5G36002.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G36001.;(source:Araport11)
AT5G36002.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G36001.;(source:Araport11)
AT5G36002.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G36001.;(source:Araport11)
AT1G07023.1	long_noncoding_rna			None;(source:Araport11)
AT3G25740.2	protein_coding		Encodes a plastid localized methionine aminopeptidase. Formerly called MAP1C, now called MAP1B.	methionine aminopeptidase 1C;(source:Araport11)
AT1G06677.1	other_rna			None;(source:Araport11)
AT2G21400.3	protein_coding		A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	SHI-related sequence3;(source:Araport11)
AT1G15830.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G15830.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G38240.3	protein_coding			Protein kinase family protein;(source:Araport11)
AT4G08590.4	protein_coding			ORTHRUS-like protein;(source:Araport11)
AT4G06455.1	long_noncoding_rna			None;(source:Araport11)
AT4G07285.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G24805;(source:Araport11)
AT3G60540.3	protein_coding			Preprotein translocase Sec, Sec61-beta subunit protein;(source:Araport11)
AT5G40650.2	protein_coding		One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion.  Expressed during germination and post-germinative growth.	succinate dehydrogenase 2-2;(source:Araport11)
AT5G16570.2	protein_coding		Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	glutamine synthetase 1;(source:Araport11)
AT4G05285.1	long_noncoding_rna			None;(source:Araport11)
AT2G08545.1	long_noncoding_rna			None;(source:Araport11)
AT2G08450.1	long_noncoding_rna			None;(source:Araport11)
AT4G08580.2	protein_coding			microfibrillar-associated protein-like protein;(source:Araport11)
AT2G06035.1	long_noncoding_rna			None;(source:Araport11)
AT1G04873.1	long_noncoding_rna			None;(source:Araport11)
AT1G06787.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G34630;(source:Araport11)
AT1G33050.6	protein_coding			hypothetical protein;(source:Araport11)
AT4G00990.2	protein_coding		jJumonji-domain-containing H3K9 histone demethylase. Loss of function mutants are susceptible to bacterial infection and early flowering.	Transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT5G51530.2	protein_coding			Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT2G39250.2	protein_coding		Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ),  share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT4G21510.2	protein_coding			F-box family protein;(source:Araport11)
AT5G06545.1	long_noncoding_rna			None;(source:Araport11)
AT5G06670.6	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G51870.5	protein_coding		Encodes a MADS-box transcription factor involved in floral transition.	AGAMOUS-like 71;(source:Araport11)
AT5G40060.2	protein_coding			Disease resistance protein (NBS-LRR class) family;(source:Araport11)
AT4G04835.1	miRNA_primary_transcript			microRNA ath-MIR841b precursor;(source:Araport11)
AT4G00925.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G09560.4	protein_coding		The PAH1 gene encodes a phosphatidate phosphohydrolase. Mutant analysis revealed its involvement in galactolipid synthesis pathway, and the membrane lipid remodeling. The pah1pah2 double-mutant showed enhanced Al-susceptibility under low-P conditions, but there was no significant differences in Al tolerance between pah1pah2 and wild type when they were grown in a solution containing 35 &#956;M Pi.	Lipin family protein;(source:Araport11)
AT2G20000.2	protein_coding		Required for cell division and cell differentiation in meristems. Encodes a homolog of the CDC27 subunit of the anaphase-promoting complex (APC). Unlike other CDC27 homologs in Arabidopsis, its transcription is cell cycle regulated. Strong hbt mutants give rise to seedlings that lack an anatomically recognizable quiescent center and differentiated columella root cap cells, the cell types derived from the wild-type hypophysis. Furthermore, they have no mitotically active root meristem and lack a differentiated lateral root cap.	CDC27 family protein;(source:Araport11)
AT2G09665.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G45800;(source:Araport11)
AT4G01820.2	protein_coding		member of MDR subfamily	P-glycoprotein 3;(source:Araport11)
AT4G13440.2	protein_coding			Calcium-binding EF-hand family protein;(source:Araport11)
AT1G08043.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G55265;(source:Araport11)
AT1G08043.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G55265;(source:Araport11)
AT2G42065.1	protein_coding			DnaJ domain protein;(source:Araport11)
AT5G22920.2	protein_coding		Encodes a protein with sequence similarity to RING, zinc finger proteins. Loss of function mutations show reduced (15%) stomatal aperture under non stress conditions.	CHY-type/CTCHY-type/RING-type Zinc finger protein;(source:Araport11)
AT3G09540.2	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT1G65070.3	protein_coding			DNA mismatch repair protein MutS, type 2;(source:Araport11)
AT1G09873.1	small_nucleolar_rna			None;(source:Araport11)
AT4G15460.3	protein_coding			glycine-rich protein;(source:Araport11)
AT5G07895.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G52210;(source:Araport11)
AT3G54740.7	protein_coding			zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT3G54740.8	protein_coding			zein-binding protein (Protein of unknown function, DUF593);(source:Araport11)
AT2G24530.2	protein_coding			transcriptional regulator of RNA polII, SAGA, subunit;(source:Araport11)
AT4G23250.3	protein_coding			cysteine-rich receptor-like protein kinase 17;(source:Araport11)
AT3G54500.8	protein_coding		Member of a small family (4 proteins) in Arabidopsis that have some overlap in function. LNK2 along with LNK1  functions in the integration of light signaling and circadian clock. It is regulated by  the clock TOC1 complex. Functions as a transcriptional coactivator.	agglutinin-like protein;(source:Araport11)
AT1G79000.3	protein_coding		Homologous to CREB-binding protein, a co-activator of transcription with histone acetyl-transferase activity. No  single prior lysine acetylation is sufficient to block HAC1 acetylation of the H3 or H4 peptides,  suggesting that HAC1, HAC5, and HAC12 can acetylate any  of several lysines present in the peptides. HAM2 acetylates histone H4 lysine 5. A plant line expressing an RNAi construct targeted against HAC1 has reduced rates of agrobacterium-mediated root transformation.	histone acetyltransferase of the CBP family 1;(source:Araport11)
AT3G54500.6	protein_coding		Member of a small family (4 proteins) in Arabidopsis that have some overlap in function. LNK2 along with LNK1  functions in the integration of light signaling and circadian clock. It is regulated by  the clock TOC1 complex. Functions as a transcriptional coactivator.	agglutinin-like protein;(source:Araport11)
AT3G54500.7	protein_coding		Member of a small family (4 proteins) in Arabidopsis that have some overlap in function. LNK2 along with LNK1  functions in the integration of light signaling and circadian clock. It is regulated by  the clock TOC1 complex. Functions as a transcriptional coactivator.	agglutinin-like protein;(source:Araport11)
AT3G54500.5	protein_coding		Member of a small family (4 proteins) in Arabidopsis that have some overlap in function. LNK2 along with LNK1  functions in the integration of light signaling and circadian clock. It is regulated by  the clock TOC1 complex. Functions as a transcriptional coactivator.	agglutinin-like protein;(source:Araport11)
AT3G23060.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G06175.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G14090;(source:Araport11)
AT5G57060.6	protein_coding			60S ribosomal L18a-like protein;(source:Araport11)
AT5G57060.7	protein_coding			60S ribosomal L18a-like protein;(source:Araport11)
AT1G62250.3	protein_coding			orotidine 5-phosphate decarboxylase;(source:Araport11)
AT5G57060.5	protein_coding			60S ribosomal L18a-like protein;(source:Araport11)
AT5G57060.3	protein_coding			60S ribosomal L18a-like protein;(source:Araport11)
AT2G06475.1	long_noncoding_rna			None;(source:Araport11)
AT5G12290.2	protein_coding		Encodes a mitochondrial outer membrane protein, involved in galactoglycerolipid biosynthesis. The dgd1 mutant phenotype is suppressed in the dgs1 mutant background.	dgd1 suppressor 1;(source:Araport11)
AT4G38580.2	protein_coding		putative farnesylated protein (At4g38580) mRNA, complete	farnesylated protein 6;(source:Araport11)
AT5G66290.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G23870.4	protein_coding		Encodes a pectin acetylesterase that removes cell wall acetate associated with pectin formation in Arabidopsis leaves.	Pectinacetylesterase family protein;(source:Araport11)
AT5G57060.8	protein_coding			60S ribosomal L18a-like protein;(source:Araport11)
AT5G57060.9	protein_coding			60S ribosomal L18a-like protein;(source:Araport11)
AT5G02945.1	long_noncoding_rna			None;(source:Araport11)
AT2G08570.1	long_noncoding_rna			None;(source:Araport11)
AT4G16710.4	protein_coding			glycosyltransferase family protein 28;(source:Araport11)
AT2G09605.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G45360;(source:Araport11)
AT3G00980.1	other_rna			None;(source:Araport11)
AT3G09115.1	long_noncoding_rna			None;(source:Araport11)
AT5G12420.2	protein_coding			O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT5G08845.1	long_noncoding_rna			None;(source:Araport11)
AT3G00610.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G61660.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G05095.1	long_noncoding_rna			None;(source:Araport11)
AT1G07433.1	long_noncoding_rna			None;(source:Araport11)
AT1G08875.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G07163.1	long_noncoding_rna			None;(source:Araport11)
AT1G09863.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G79510;(source:Araport11)
AT1G09863.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G79510;(source:Araport11)
AT1G09863.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G79510;(source:Araport11)
AT3G03595.1	long_noncoding_rna			None;(source:Araport11)
AT1G09863.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G79510;(source:Araport11)
AT1G09863.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G79510;(source:Araport11)
AT5G18810.2	protein_coding		encodes an SC35-like splicing factor of 28 kD localized to the nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SC35-like splicing factor 28;(source:Araport11)
AT3G06290.3	protein_coding		Encodes a component of the conserved TREX-2 complex that couples mRNA transcription with nucleo-cytoplasmic export, that is required for prevention of epigenetic gene silencing and has additional roles in regulating siRNAs and DNA methylation.	SAC3/GANP/Nin1/mts3/eIF-3 p25 family;(source:Araport11)
AT4G34060.4	protein_coding		Encodes a protein with  5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.	demeter-like protein 3;(source:Araport11)
AT1G04563.1	long_noncoding_rna			None;(source:Araport11)
AT5G01660.2	protein_coding			influenza virus NS1A-binding protein;(source:Araport11)
AT3G21950.2	protein_coding		SABATH family methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G14385.8	protein_coding			histone acetyltransferase subunit NuA4-domain protein;(source:Araport11)
AT4G14385.9	protein_coding			histone acetyltransferase subunit NuA4-domain protein;(source:Araport11)
AT1G27540.3	protein_coding			F-box protein (DUF295);(source:Araport11)
AT1G21150.3	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT1G21150.2	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT4G14385.6	protein_coding			histone acetyltransferase subunit NuA4-domain protein;(source:Araport11)
AT4G14385.7	protein_coding			histone acetyltransferase subunit NuA4-domain protein;(source:Araport11)
AT4G14385.4	protein_coding			histone acetyltransferase subunit NuA4-domain protein;(source:Araport11)
AT4G14385.5	protein_coding			histone acetyltransferase subunit NuA4-domain protein;(source:Araport11)
AT4G08325.1	small_nucleolar_rna			None;(source:Araport11)
AT4G05675.1	long_noncoding_rna			None;(source:Araport11)
AT2G04700.2	protein_coding		Encodes catalytic subunit of ferredoxin/thioredoxin reductase.	ferredoxin thioredoxin reductase catalytic beta chain family protein;(source:Araport11)
AT4G09585.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G09840.7	protein_coding			shaggy-like protein kinase 41;(source:Araport11)
AT4G04760.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT4G04760.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT4G27040.6	protein_coding			EAP30/Vps36 family protein;(source:Araport11)
AT3G05445.1	long_noncoding_rna			None;(source:Araport11)
AT1G09840.9	protein_coding			shaggy-like protein kinase 41;(source:Araport11)
AT1G09840.8	protein_coding			shaggy-like protein kinase 41;(source:Araport11)
AT1G64110.4	protein_coding		Target promoter of the male germline-specific transcription factor DUO1.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G64110.5	protein_coding		Target promoter of the male germline-specific transcription factor DUO1.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G03535.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G17800;(source:Araport11)
AT5G19520.2	protein_coding			mechanosensitive channel of small conductance-like 9;(source:Araport11)
AT2G03980.3	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G03980.2	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G08333.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G60670;(source:Araport11)
AT2G03980.4	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G07145.1	long_noncoding_rna			None;(source:Araport11)
AT1G14910.2	protein_coding			ENTH/ANTH/VHS superfamily protein;(source:Araport11)
AT3G06525.1	long_noncoding_rna			None;(source:Araport11)
AT5G61340.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G07203.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial;(source:Araport11)
AT1G07203.2	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial;(source:Araport11)
AT5G08675.1	long_noncoding_rna			None;(source:Araport11)
AT1G07203.4	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial;(source:Araport11)
AT1G07203.5	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial;(source:Araport11)
AT1G07203.6	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial;(source:Araport11)
AT3G17970.2	protein_coding		Integral chloroplast outer membrane protein. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	translocon at the outer membrane of chloroplasts 64-III;(source:Araport11)
AT3G55640.4	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G05695.1	long_noncoding_rna			None;(source:Araport11)
AT3G55640.2	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G30620.6	protein_coding		encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G30620.5	protein_coding		encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G30620.4	protein_coding		encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G05940.2	protein_coding		Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.	cationic amino acid transporter 9;(source:Araport11)
AT1G05940.3	protein_coding		Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.	cationic amino acid transporter 9;(source:Araport11)
AT3G04030.4	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT4G07855.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G27500;(source:Araport11)
AT5G48410.3	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 1.3;(source:Araport11)
AT1G78090.2	protein_coding		homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases	trehalose-6-phosphate phosphatase;(source:Araport11)
AT2G22610.3	protein_coding			Di-glucose binding protein with Kinesin motor domain-containing protein;(source:Araport11)
AT3G49640.3	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT5G55820.4	protein_coding		Encodes a plant ortholog of the inner centromere protein (INCENP), which is implicated in the control of chromosome segregation and cytokinesis in yeast and animals.  Required for female gametophytic cell specification and seed development.	inner centromere protein, ARK-binding region protein;(source:Araport11)
AT5G37850.4	protein_coding		Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT5G00330.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G41515.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G49640.4	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G16890.2	protein_coding		Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein, PPR40, which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses.  Mutations in PPR40 result in enhanced sensitivity to salt, ABA and oxidative stress, as well as reduced electron transport through Complex III (cytochrome c reductase).	pentatricopeptide (PPR) domain protein 40;(source:Araport11)
AT2G37150.6	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G32375.2	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT4G08525.1	long_noncoding_rna			None;(source:Araport11)
AT1G36730.uORF1	uORF			Derives_from AT1G36730;(source:Araport11)
AT5G22770.4	protein_coding			alpha-adaptin;(source:Araport11)
AT3G57410.2	protein_coding		Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.	villin 3;(source:Araport11)
AT1G09387.1	long_noncoding_rna			None;(source:Araport11)
AT5G55820.7	protein_coding		Encodes a plant ortholog of the inner centromere protein (INCENP), which is implicated in the control of chromosome segregation and cytokinesis in yeast and animals.  Required for female gametophytic cell specification and seed development.	inner centromere protein, ARK-binding region protein;(source:Araport11)
AT4G34650.2	protein_coding		Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.	squalene synthase 2;(source:Araport11)
AT1G63740.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G46330.2	protein_coding		Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response.  FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB.The mRNA is cell-to-cell mobile.	Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT5G60930.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G28520.3	protein_coding		VOZ transcription factor which acts as positive regulator of several salt-responsive genes. Functionally redundant in salt stress with VOZ2.	vascular plant one zinc finger protein;(source:Araport11)
AT5G48410.2	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 1.3;(source:Araport11)
AT1G28520.5	protein_coding		VOZ transcription factor which acts as positive regulator of several salt-responsive genes. Functionally redundant in salt stress with VOZ2.	vascular plant one zinc finger protein;(source:Araport11)
AT1G28520.4	protein_coding		VOZ transcription factor which acts as positive regulator of several salt-responsive genes. Functionally redundant in salt stress with VOZ2.	vascular plant one zinc finger protein;(source:Araport11)
AT4G35770.6	protein_coding		Senescence-associated gene that is strongly induced by phosphate starvation.  Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	Rhodanese/Cell cycle control phosphatase superfamily protein;(source:Araport11)
AT1G03370.2	protein_coding			C2 calcium/lipid-binding and GRAM domain containing protein;(source:Araport11)
AT5G55900.2	protein_coding			Sucrase/ferredoxin-like family protein;(source:Araport11)
AT5G03615.1	long_noncoding_rna			None;(source:Araport11)
AT1G04127.1	long_noncoding_rna			None;(source:Araport11)
AT4G14170.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT1G08323.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G60460;(source:Araport11)
AT3G01390.4	protein_coding		Subunit G of the vacuolar membrane ATPAse complex	vacuolar membrane ATPase 10;(source:Araport11)
AT1G06753.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G34370;(source:Araport11)
AT1G03905.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G35785.6	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G48690.3	protein_coding			ubiquitin-associated (UBA)/TS-N domain protein;(source:Araport11)
AT3G27610.5	protein_coding			Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT3G01535.1	long_noncoding_rna			None;(source:Araport11)
AT4G34140.10	protein_coding			D111/G-patch domain-containing protein;(source:Araport11)
AT5G00860.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G02520;(source:Araport11)
AT5G09825.1	long_noncoding_rna			None;(source:Araport11)
AT2G37150.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G08300.3	protein_coding			no vein-like protein;(source:Araport11)
AT1G08300.2	protein_coding			no vein-like protein;(source:Araport11)
AT3G27610.7	protein_coding			Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT4G03060.2	pseudogene		Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.	pseudogene of 2-oxoglutarate-dependent dioxygenase;(source:Araport11)
AT4G09955.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G39960;(source:Araport11)
AT2G29925.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G04865.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT2G15030.4	pseudogene			pseudogene of WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein;(source:Araport11)
AT2G15030.5	pseudogene			pseudogene of WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein;(source:Araport11)
AT1G80160.3	protein_coding		Vicinal oxygen chelate (VOC) superfamily member.	Lactoylglutathione lyase / glyoxalase I family protein;(source:Araport11)
AT2G15030.2	pseudogene			pseudogene of WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein;(source:Araport11)
AT2G15030.3	pseudogene			pseudogene of WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein;(source:Araport11)
AT5G03185.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G20650;(source:Araport11)
AT5G08775.1	long_noncoding_rna			None;(source:Araport11)
AT5G44560.3	protein_coding			SNF7 family protein;(source:Araport11)
AT3G51075.12	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT2G04395.4	protein_coding			Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G04395.5	protein_coding			Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G04395.2	protein_coding			Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT2G04395.3	protein_coding			Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G78910.2	protein_coding			Pseudouridine synthase family protein;(source:Araport11)
AT2G45290.2	protein_coding			Transketolase;(source:Araport11)
AT2G09220.1	long_noncoding_rna			None;(source:Araport11)
AT3G51075.11	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT3G21290.2	protein_coding			dentin sialophosphoprotein-like protein;(source:Araport11)
AT1G65165.1	protein_coding			inactive ubiquitin carboxyl-terminal hydrolase-like protein;(source:Araport11)
AT5G50590.2	protein_coding		Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include:   At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463).  Two copies of HSD1 and HSD4 exist due to a gene duplication event.  In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.	hydroxysteroid dehydrogenase 4;(source:Araport11)
AT3G27610.8	protein_coding			Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT5G01575.1	long_noncoding_rna			None;(source:Araport11)
AT1G33400.2	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G02905.1	long_noncoding_rna			None;(source:Araport11)
AT4G07785.1	long_noncoding_rna			None;(source:Araport11)
AT2G08525.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G32480;(source:Araport11)
AT5G25360.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G03265.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G08847.1	long_noncoding_rna			None;(source:Araport11)
AT1G08795.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G08985.1	long_noncoding_rna			None;(source:Araport11)
AT2G42810.4	protein_coding		Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. The gene is alternately spliced. This variant is an integral membrane protein localized to the ER and nuclear envelope. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.  It also regulates tetrapyrrole biosynthesis through the accumulation of Mg-ProtoIX and acts as a negative regulator of photosynthesis associated nuclear gene expression during chloroplast biogenesis and development.	protein phosphatase 5.2;(source:Araport11)
AT5G43990.13	protein_coding		Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT3G59710.3	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G39855.3	protein_coding			plant/protein;(source:Araport11)
AT1G13790.2	protein_coding		Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).	XH/XS domain-containing protein;(source:Araport11)
AT3G00360.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G43990.12	protein_coding		Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT1G67235.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G04520.3	protein_coding		Encodes a threonine aldolase, involved in threonine degradation to glycine. Expressed in vascular tissue through out the plant.	threonine aldolase 2;(source:Araport11)
AT4G14050.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G34550.2	protein_coding			F-box protein;(source:Araport11)
AT4G29470.2	protein_coding		Encodes one of the four Arabidopsis phospholipase PLA2 parologs: AT2G06925 (PLA2-ALPHA), AT2G19690 (PLA2-BETA), AT4G29460 (PLA2-GAMMA) and AT4G29470 (PLA2-DELTA). Involved in pollen development and germination and tube growth.	Phospholipase A2 family protein;(source:Araport11)
AT5G04347.2	protein_coding			Plant self-incompatibility protein S1 family;(source:Araport11)
AT2G02490.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G62180.2	protein_coding			Plant invertase/pectin methylesterase inhibitor superfamily protein;(source:Araport11)
AT1G07333.1	long_noncoding_rna			None;(source:Araport11)
AT4G05615.1	long_noncoding_rna			None;(source:Araport11)
AT3G00920.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G43990.17	protein_coding		Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT3G05935.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G05935.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G05935.4	protein_coding			hypothetical protein;(source:Araport11)
AT3G05935.5	protein_coding			hypothetical protein;(source:Araport11)
AT3G08240.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52120;(source:Araport11)
AT2G31990.3	protein_coding			Exostosin family protein;(source:Araport11)
AT2G31990.2	protein_coding			Exostosin family protein;(source:Araport11)
AT5G43990.15	protein_coding		Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT4G37110.4	protein_coding			Zinc-finger domain of monoamine-oxidase A repressor R1;(source:Araport11)
AT2G43465.6	protein_coding			RNA-binding ASCH domain protein;(source:Araport11)
AT4G27710.2	protein_coding		Encodes CYP709B3, a cytochrome P450 monooxygenase involved in salt tolerance. The mRNA is cell-to-cell mobile.	cytochrome P450, family 709, subfamily B, polypeptide 3;(source:Araport11)
AT4G37110.3	protein_coding			Zinc-finger domain of monoamine-oxidase A repressor R1;(source:Araport11)
AT4G37110.2	protein_coding			Zinc-finger domain of monoamine-oxidase A repressor R1;(source:Araport11)
AT4G26600.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G26600.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G26600.7	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G26600.6	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G47885.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G26600.4	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G63215.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G57980.2	protein_coding			DNA-binding bromodomain-containing protein;(source:Araport11)
AT4G26600.8	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G36290.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G29300.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G17780.4	protein_coding		ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.	transmembrane protein;(source:Araport11)
AT2G03390.6	protein_coding			uvrB/uvrC motif-containing protein;(source:Araport11)
AT2G03390.7	protein_coding			uvrB/uvrC motif-containing protein;(source:Araport11)
AT2G03390.4	protein_coding			uvrB/uvrC motif-containing protein;(source:Araport11)
AT2G03390.5	protein_coding			uvrB/uvrC motif-containing protein;(source:Araport11)
AT5G20480.2	protein_coding		Encodes a predicted leucine-rich repeat receptor kinase (LRR-RLK).  Functions as the receptor for bacterial PAMP (pathogen associated molecular patterns) EF-Tu.	EF-TU receptor;(source:Araport11)
AT2G03390.3	protein_coding			uvrB/uvrC motif-containing protein;(source:Araport11)
AT5G09945.1	small_nuclear_rna			U2;(source:Araport11)
AT1G09257.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G71490;(source:Araport11)
AT1G74675.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G13965.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G08385.1	long_noncoding_rna			None;(source:Araport11)
AT5G39030.2	protein_coding		Involved in growth adaptation upon exposure to metal ions. Contributes together with the other MDS genes to the complex network of CrRLK1Ls that positively and negatively affect growth.	Protein kinase superfamily protein;(source:Araport11)
AT5G37370.12	protein_coding		encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	PRP38 family protein;(source:Araport11)
AT4G38150.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT5G37370.10	protein_coding		encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	PRP38 family protein;(source:Araport11)
AT5G37370.11	protein_coding		encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	PRP38 family protein;(source:Araport11)
AT5G55290.3	protein_coding			ATPase, V0 complex, subunit E;(source:Araport11)
AT1G09273.1	long_noncoding_rna			None;(source:Araport11)
AT1G79910.3	protein_coding			Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT2G08625.1	long_noncoding_rna			None;(source:Araport11)
AT1G72860.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G31300.3	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G04257.1	long_noncoding_rna			None;(source:Araport11)
AT2G45910.2	protein_coding			U-box domain-containing protein kinase family protein;(source:Araport11)
AT2G03320.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G54430.4	protein_coding		Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT4G02640.4	protein_coding		Encodes a basic leucine zipper (bZIP) transcription factor AtbZIP10.  AtbZIP10 shuttles between the nucleus and the cytoplasm.  It binds consensus G- and C-box DNA sequences.  AtbZIP10 acts antagonistically with LSD1 in both pathogen-induced hypersensitive response and basal defense responses.	bZIP transcription factor family protein;(source:Araport11)
AT3G05305.1	long_noncoding_rna			None;(source:Araport11)
AT5G45830.2	protein_coding		Encodes DOG1 (DELAY OF GERMINATION 1).  A quantitative trait locus involved in the control of seed dormancy.  Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1.  DOG1 expression is seed-specific.	delay of germination 1;(source:Araport11)
AT2G05380.3	protein_coding		glycine-rich protein 3 short isoform (GRP3S) mRNA, completeThe mRNA is cell-to-cell mobile.	glycine-rich protein 3 short isoform;(source:Araport11)
AT5G45830.6	protein_coding		Encodes DOG1 (DELAY OF GERMINATION 1).  A quantitative trait locus involved in the control of seed dormancy.  Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1.  DOG1 expression is seed-specific.	delay of germination 1;(source:Araport11)
AT5G45830.4	protein_coding		Encodes DOG1 (DELAY OF GERMINATION 1).  A quantitative trait locus involved in the control of seed dormancy.  Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1.  DOG1 expression is seed-specific.	delay of germination 1;(source:Araport11)
AT5G27550.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G08510.1	long_noncoding_rna			None;(source:Araport11)
AT1G60545.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G60540;(source:Araport11)
AT4G08470.3	protein_coding		Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9),  At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002, 7(7):301.	MAPK/ERK kinase kinase 3;(source:Araport11)
AT1G60545.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G60540;(source:Araport11)
AT1G60545.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G60540;(source:Araport11)
AT5G56970.2	protein_coding		It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase 3;(source:Araport11)
AT1G65960.3	protein_coding		glutamate decarboxylase (GAD2)The mRNA is cell-to-cell mobile.	glutamate decarboxylase 2;(source:Araport11)
AT1G65960.4	protein_coding		glutamate decarboxylase (GAD2)The mRNA is cell-to-cell mobile.	glutamate decarboxylase 2;(source:Araport11)
AT5G21040.3	protein_coding		Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses. Its expression is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.	F-box protein 2;(source:Araport11)
AT2G44798.10	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44800;(source:Araport11)
AT2G40711.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G35927.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G00700.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G54430.3	protein_coding		Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.	Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT4G28830.4	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G47120.2	protein_coding		GDS1is a member of the  C3H-type zinc finger family of proteins. Mutants display growth defects due to reduced cell number and size.	RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT5G62580.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT4G37940.2	protein_coding		encodes a MADS box protein, highly expressed in the root.	AGAMOUS-like 21;(source:Araport11)
AT2G24350.2	protein_coding			RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G51340.3	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G51340.2	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G09255.1	long_noncoding_rna			None;(source:Araport11)
AT5G44070.2	protein_coding		Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+.The mRNA is cell-to-cell mobile.	phytochelatin synthase 1 (PCS1);(source:Araport11)
AT3G58830.2	protein_coding		Encodes a phosphatidylglycerophosphate (PGP) phosphatase that localizes to chloroplasts in above ground plant parts and mitochondria in root tips and root hairs and is involved in the synthesis of plastidial Phosphatidylglycerol (PG). This enzyme is responsible for the second step of PG synthesis. Mutants show reduced root growth.	haloacid dehalogenase (HAD) superfamily protein;(source:Araport11)
AT3G51340.4	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT4G06460.1	long_noncoding_rna			None;(source:Araport11)
AT5G35980.3	protein_coding		Encodes a dual specificity protein kinase which phosphorylates substract proteins on Ser/Thr and Tyr residues. Some substrates include annexin family proteins. YAK1 mutations suppress TOR deficiency in Arabidopsis and consequences of lst8 mutations. The YAK1 protein is phosphorylated by the TOR kinase.	YAK1-like protein 1;(source:Araport11)
AT1G22650.2	protein_coding			Plant neutral invertase family protein;(source:Araport11)
AT1G34015.1	protein_coding			S-locus glycoprotein family protein;(source:Araport11)
AT3G63320.2	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G04273.1	small_nucleolar_rna			None;(source:Araport11)
AT3G01170.2	protein_coding			Ribosomal protein L34e superfamily protein;(source:Araport11)
AT2G07935.1	long_noncoding_rna			None;(source:Araport11)
AT2G30740.7	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G30740.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G30740.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G30740.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G30740.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G30740.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G08840.8	protein_coding			D-alanine-D-alanine ligase family;(source:Araport11)
AT1G77960.2	protein_coding			repressor ROX1-like protein;(source:Araport11)
AT3G08840.6	protein_coding			D-alanine-D-alanine ligase family;(source:Araport11)
AT2G17140.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G38580.3	protein_coding			Mitochondrial ATP synthase D chain-related protein;(source:Araport11)
AT2G38580.2	protein_coding			Mitochondrial ATP synthase D chain-related protein;(source:Araport11)
AT1G08997.1	long_noncoding_rna			None;(source:Araport11)
AT5G49190.2	protein_coding		Encodes a sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). However, analyses of an sus2 mutant revealed a deficiency in sucrose synthase activity 12 and 15 days after flowering. There are some reports that SUS2 transcript levels are increased in leaves specifically by O(2) deficiency whereas other reports indicate that SUS2 is expressed only in seeds. Immulocalization shows that SUS2 is present in the cytosol of developing seeds, but, it also associated with plastids, though not located within them.	sucrose synthase 2;(source:Araport11)
AT2G30740.9	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G30740.8	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G12990.5	protein_coding			transmembrane protein;(source:Araport11)
AT3G01150.4	protein_coding		Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	polypyrimidine tract-binding protein 1;(source:Araport11)
AT3G01150.3	protein_coding		Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	polypyrimidine tract-binding protein 1;(source:Araport11)
AT1G31160.2	protein_coding		Encodes a member of the histidine triad nucleotide-binding family of proteins, but its activity has not been determined.	HISTIDINE TRIAD NUCLEOTIDE-BINDING 2;(source:Araport11)
AT3G05125.1	long_noncoding_rna			None;(source:Araport11)
AT4G16990.13	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT3G18930.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G59570.2	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT3G59570.3	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT1G66910.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G04360.2	protein_coding		Encodes an enzyme thought to be involved in the hydrolysis of the &#945;-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.	limit dextrinase;(source:Araport11)
AT1G06710.12	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G61430.8	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G08630.7	protein_coding		Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.	threonine aldolase 1;(source:Araport11)
AT2G04845.4	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT4G16990.11	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT2G04845.3	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT5G09110.1	long_noncoding_rna			None;(source:Araport11)
AT1G07843.1	long_noncoding_rna			None;(source:Araport11)
AT5G03535.1	long_noncoding_rna			None;(source:Araport11)
AT2G47240.3	protein_coding			AMP-dependent synthetase and ligase family protein;(source:Araport11)
AT5G03300.2	protein_coding		Encodes adenosine kinase 2 (ADK2), a typical, constitutively expressed housekeeping enzyme. Shows a high sequence identity with ADK1. Involved in salvage synthesis of adenylates and methyl recycling. Enzyme activity is substantially inhibited in roots, siliques and dry seeds by an unknown compound. May contribute to cytokinin interconversion.The mRNA is cell-to-cell mobile.	adenosine kinase 2;(source:Araport11)
AT1G33500.3	protein_coding			tropomyosin;(source:Araport11)
AT5G65400.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G15910.3	protein_coding			CSL zinc finger domain-containing protein;(source:Araport11)
AT3G09005.1	small_nuclear_rna			U2;(source:Araport11)
AT5G08170.5	protein_coding			porphyromonas-type peptidyl-arginine deiminase family protein;(source:Araport11)
AT5G11440.2	protein_coding		Interacts with PAB (poly A binding protein) in yeast two hybrid experiments. Contains PAM2 motif, a PABC interacting domain.	CTC-interacting domain 5;(source:Araport11)
AT1G06717.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G34000;(source:Araport11)
AT4G16990.15	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G66465.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G29400.3	protein_coding		A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML5 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML5 is the transcript with highest frequency of alternative splicing. Expression was detected during embryo development (heart and torpedo stage) and in vegetative and floral apices.	MEI2-like protein 5;(source:Araport11)
AT2G09650.1	long_noncoding_rna			None;(source:Araport11)
AT4G05850.1	long_noncoding_rna			None;(source:Araport11)
AT3G01310.3	protein_coding		Encodes a functional VIP1/PPIP5K-type ATP-grasp kinase that is involved in both InsP6 to InsP7 conversion and InsP7 to InsP8 conversion, producing the InsP8 cofactor of the ASK1-COI1-JAZ-jasmonate co-receptor complex. It is the major isoform in plants, is required for jasmonate-dependent defenses, and plays an important role in plant defenses against necrotrophic fungi and insect herbivores.	Phosphoglycerate mutase-like family protein;(source:Araport11)
AT2G37125.1	protein_coding			GRF zinc finger protein;(source:Araport11)
AT5G17522.1	protein_coding			phosphoglucosamine mutase family protein;(source:Araport11)
AT5G38430.2	protein_coding		Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410).	Ribulose bisphosphate carboxylase (small chain) family protein;(source:Araport11)
AT3G06605.1	long_noncoding_rna			None;(source:Araport11)
AT5G17830.2	protein_coding			Plasma-membrane choline transporter family protein;(source:Araport11)
AT5G08925.1	miRNA_primary_transcript			microRNA ath-MIR8167f precursor;(source:Araport11)
AT1G08193.1	long_noncoding_rna			None;(source:Araport11)
AT2G36890.2	protein_coding		Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation.The mRNA is cell-to-cell mobile.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT1G61290.2	protein_coding		member of SYP12 Gene Family	syntaxin of plants 124;(source:Araport11)
AT5G06180.3	protein_coding			fission ELM1-like protein (DUF1022);(source:Araport11)
AT3G27900.3	protein_coding			hypothetical protein (DUF1184);(source:Araport11)
AT5G09155.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G63320;(source:Araport11)
AT1G06783.1	long_noncoding_rna			None;(source:Araport11)
AT1G22530.2	protein_coding		PATLs belong to a family of proteins having a Golgi dynamics (GOLD) domain in tandem with the Sec14p-like domain. PATLs are auxin regulated. Quadruple mutants (patl2456)  show altered PIN1 lateralization in root endodermis cells.	PATELLIN 2;(source:Araport11)
AT5G56990.2	protein_coding			proteinase inhibitor I25, cystatin, motif protein;(source:Araport11)
AT3G30305.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G17610.2	protein_coding			tRNA/rRNA methyltransferase (SpoU) family protein;(source:Araport11)
AT2G06855.1	small_nucleolar_rna			None;(source:Araport11)
AT4G19990.4	protein_coding			FAR1-related sequence 1;(source:Araport11)
AT5G57567.2	protein_coding			GCK domain protein;(source:Araport11)
AT4G17610.3	protein_coding			tRNA/rRNA methyltransferase (SpoU) family protein;(source:Araport11)
AT1G74040.3	protein_coding		Encodes an active Arabidopsis isopropylmalate synthase IPMS2.  Involved in leucine biosynthesis.  Do not participate in the chain elongation of glucosinolates.  Expressed constitutively throughout the plant. Loss of IPMS2 can be compensated by a second isopropylmalate synthase gene IPMS1 (At1g18500).	2-isopropylmalate synthase 1;(source:Araport11)
AT5G00905.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G03190;(source:Araport11)
AT5G02225.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G14440;(source:Araport11)
AT1G07867.1	miRNA_primary_transcript			microRNA ath-MIR156i precursor;(source:Araport11)
AT3G20810.5	protein_coding		JMJD5 encodes a protein which contains  a jumonji-C (jmjC) domain. jmjd5 mutant plants have a short-period circadian phenotype. JMJD5 has histone demethylase activity and interacts with EFM to repress FT.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G20810.4	protein_coding		JMJD5 encodes a protein which contains  a jumonji-C (jmjC) domain. jmjd5 mutant plants have a short-period circadian phenotype. JMJD5 has histone demethylase activity and interacts with EFM to repress FT.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G32390.6	protein_coding		Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family.	glutamate receptor 3.5;(source:Araport11)
AT5G43240.4	protein_coding			hypothetical protein (DUF674);(source:Araport11)
AT2G22720.4	protein_coding			SPT2 chromatin protein;(source:Araport11)
AT2G04075.1	long_noncoding_rna			None;(source:Araport11)
AT4G11655.2	protein_coding			Uncharacterized protein family (UPF0497);(source:Araport11)
AT5G13940.2	protein_coding			aminopeptidase;(source:Araport11)
AT4G21460.2	protein_coding			Ribosomal protein S24/S35;(source:Araport11)
AT5G58690.2	protein_coding			phosphatidylinositol-speciwc phospholipase C5;(source:Araport11)
AT5G58690.3	protein_coding			phosphatidylinositol-speciwc phospholipase C5;(source:Araport11)
AT5G00550.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G19530.2	protein_coding		Encodes a TIR-NB-LRR resistance protein.  Transient expression in tobacco induces cell death.	disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G00550.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G01145.1	small_nucleolar_rna			None;(source:Araport11)
AT3G07670.2	protein_coding			Rubisco methyltransferase family protein;(source:Araport11)
AT1G06067.1	long_noncoding_rna			None;(source:Araport11)
AT1G31175.2	protein_coding			cytochrome C oxidase biogenesis Cmc1-like protein;(source:Araport11)
AT1G07120.2	protein_coding			CHUP1-like protein;(source:Araport11)
AT3G53670.uORF1	uORF			Derives_from AT3G53670;(source:Araport11)
AT1G71691.3	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT2G04405.1	long_noncoding_rna			None;(source:Araport11)
AT5G39940.4	protein_coding			FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT3G14463.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G07935.1	long_noncoding_rna			None;(source:Araport11)
AT2G31910.3	protein_coding		member of Putative Na+/H+ antiporter family	cation/H+ exchanger 21;(source:Araport11)
AT2G31910.2	protein_coding		member of Putative Na+/H+ antiporter family	cation/H+ exchanger 21;(source:Araport11)
AT4G27745.4	protein_coding			Yippee family putative zinc-binding protein;(source:Araport11)
AT1G80100.3	protein_coding		AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for  phosphotransfer, present in the other  AHPs. AHP6 does not appear to  have phosphotransfer activity. Acts  as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated  pericycle cell files. Negative regulator  of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of  the first exon. In ahp6-2 seedlings,  only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	histidine phosphotransfer protein 6;(source:Araport11)
AT4G06775.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G18372;(source:Araport11)
AT2G08245.1	long_noncoding_rna			None;(source:Araport11)
AT4G04235.1	long_noncoding_rna			None;(source:Araport11)
AT4G03480.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT1G08707.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G64561;(source:Araport11)
AT1G15460.3	protein_coding		Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.	HCO3- transporter family;(source:Araport11)
AT3G04695.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G24503;(source:Araport11)
AT5G37710.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G39940.3	protein_coding			FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT1G61430.9	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G77290.3	protein_coding			Glutathione S-transferase family protein;(source:Araport11)
AT5G57630.3	protein_coding		CBL-interacting protein kinase.When mutated plants are hypersensitive to salt and osmotic stress.	CBL-interacting protein kinase 21;(source:Araport11)
AT2G16090.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G16090.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G16090.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G46270.4	protein_coding		encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3??s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2.	G-box binding factor 3;(source:Araport11)
AT5G17910.3	protein_coding			cardiomyopathy-associated protein;(source:Araport11)
AT1G05467.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G19130;(source:Araport11)
AT4G27745.2	protein_coding			Yippee family putative zinc-binding protein;(source:Araport11)
AT1G33230.2	protein_coding			TMPIT-like protein;(source:Araport11)
AT5G53120.7	protein_coding		encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.	spermidine synthase 3;(source:Araport11)
AT2G27230.uORF1	uORF			Derives_from AT2G27230;(source:Araport11)
AT5G00525.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G04735.1	long_noncoding_rna			None;(source:Araport11)
AT2G46270.3	protein_coding		encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3??s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2.	G-box binding factor 3;(source:Araport11)
AT1G79630.7	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G79630.6	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G79630.5	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G79630.4	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G79630.8	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G06003.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G26500;(source:Araport11)
AT5G18735.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G36305.2	protein_coding		Encodes an endoprotease involved in the cleavage of prenylated CaaX-box proteins. In vitro, it can cleave a farnesylated tetrapeptide and it can promote membrane-localization of a farnesylated GFP:AtROP9 protein when both are expressed in yeast.	farnesylated protein-converting enzyme 2;(source:Araport11)
AT1G49480.3	protein_coding		Encodes a nuclear-localized DNA-binding protein that interacts with ITN1 at the PM and nuclei in vivo and may regulate ITN Primes subcellular localization.	related to vernalization1 1;(source:Araport11)
AT3G57590.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G66510.4	protein_coding			AAR2 protein family;(source:Araport11)
AT3G24514.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G12990.4	protein_coding			transmembrane protein;(source:Araport11)
AT5G17850.2	protein_coding		CCX2 is a putative cation/Ca2+ exchange protein. It is located in the endoplasmic reticulum. It plays a role in salt induced calcium signaling. Loss of function results in decreased cytosolic and increased ER Ca2+ concentrations.	Sodium/calcium exchanger family protein;(source:Araport11)
AT4G12990.6	protein_coding			transmembrane protein;(source:Araport11)
AT4G12990.7	protein_coding			transmembrane protein;(source:Araport11)
AT4G27540.2	protein_coding			prenylated RAB acceptor 1.H;(source:Araport11)
AT4G12990.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G12990.3	protein_coding			transmembrane protein;(source:Araport11)
AT5G65920.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT2G06225.1	long_noncoding_rna			None;(source:Araport11)
AT1G04623.1	long_noncoding_rna			None;(source:Araport11)
AT5G07065.1	miRNA_primary_transcript			microRNA ath-MIR2939 precursor;(source:Araport11)
AT4G14520.7	protein_coding			DNA-directed RNA polymerase II-like protein;(source:Araport11)
AT4G14520.6	protein_coding			DNA-directed RNA polymerase II-like protein;(source:Araport11)
AT3G45070.2	protein_coding		Encodes a sulfotransferase with sulfating activity toward flavonoids.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G45070.3	protein_coding		Encodes a sulfotransferase with sulfating activity toward flavonoids.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G14520.9	protein_coding			DNA-directed RNA polymerase II-like protein;(source:Araport11)
AT2G12646.3	protein_coding			PLATZ transcription factor family protein;(source:Araport11)
AT1G08027.1	long_noncoding_rna			None;(source:Araport11)
AT1G49490.2	protein_coding		Pollen expressed protein required for pollen tube growth.Along with other members of the LRX family, itnteracts with RALF4 to control pollen tube growth and integrity. Loss of function results in premature pollen tube rupture and reduced fertility.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G56110.4	protein_coding			prenylated RAB acceptor 1.B1;(source:Araport11)
AT3G56110.3	protein_coding			prenylated RAB acceptor 1.B1;(source:Araport11)
AT5G45130.2	protein_coding		small GTP binding protein. The mRNA is cell-to-cell mobile.	Ras small GTP-binding family protein;(source:Araport11)
AT5G07595.1	long_noncoding_rna			None;(source:Araport11)
AT2G19940.3	protein_coding			Putative N-acetyl-gamma-glutamyl-phosphate reductase;(source:Araport11)
AT4G05320.7	protein_coding		One of five polyubiquitin genes in A. thaliana.  These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.The mRNA is cell-to-cell mobile.	polyubiquitin 10;(source:Araport11)
AT4G26095.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G26090;(source:Araport11)
AT2G02070.2	protein_coding		RAVEN is part of the network regulated by BLJUEJAY, JACKDAW, SACRECROW and SHORT-ROOT to regulate root tissue patterning through cell lineage specification and asymmetric cell division. RAVEN is directly activated by SHORT-ROOT and directly repressed by JACKDAW.	indeterminate(ID)-domain 5;(source:Araport11)
AT3G48120.2	protein_coding			serine/arginine-rich splicing factor;(source:Araport11)
AT2G19920.2	protein_coding			RNA-dependent RNA polymerase family protein;(source:Araport11)
AT2G19920.3	protein_coding			RNA-dependent RNA polymerase family protein;(source:Araport11)
AT4G06400.1	long_noncoding_rna			None;(source:Araport11)
AT2G08405.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G30615;(source:Araport11)
AT2G19920.4	protein_coding			RNA-dependent RNA polymerase family protein;(source:Araport11)
AT3G17668.2	protein_coding			DnaJ/Hsp40 cysteine-rich domain superfamily protein;(source:Araport11)
AT1G79985.1	protein_coding			structural molecules protein;(source:Araport11)
AT1G79985.2	protein_coding			structural molecules protein;(source:Araport11)
AT1G79985.3	protein_coding			structural molecules protein;(source:Araport11)
AT4G04535.1	long_noncoding_rna			None;(source:Araport11)
AT3G56100.2	protein_coding		Protein kinase expressed in meristematic cells. Phosphorylates AGL24.	meristematic receptor-like kinase;(source:Araport11)
AT4G38092.2	protein_coding			exportin-4 protein;(source:Araport11)
AT2G04360.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G04360.3	protein_coding			transmembrane protein;(source:Araport11)
AT2G22750.5	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G57560.2	protein_coding		Member of the R2R3 factor gene family.	myb domain protein 50;(source:Araport11)
AT2G04360.4	protein_coding			transmembrane protein;(source:Araport11)
AT1G10170.2	protein_coding		Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1.  Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.	NF-X-like 1;(source:Araport11)
AT3G20890.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G05477.1	long_noncoding_rna			None;(source:Araport11)
AT3G02590.2	protein_coding			Fatty acid hydroxylase superfamily protein;(source:Araport11)
AT3G09240.2	protein_coding			kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT1G05443.1	long_noncoding_rna			None;(source:Araport11)
AT3G46385.4	pseudogene			pseudogene of Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G08265.1	long_noncoding_rna			None;(source:Araport11)
AT3G05270.3	protein_coding		Encodes a protein that localizes at motile vesicle-like small compartments in differentiating xylem cells that is associated with microtubule plus-ends.  VETH-positive compartments are unlikely to be elements in conventional endomembrane trafficking pathways.  It can associate with COG2, and together these two proteins co-localize with the EXO70A1 exocyst subunit, tethering EXO70A1 to compartments associated with cortical microtubules.	filament-like protein (DUF869);(source:Araport11)
AT1G79270.3	protein_coding			evolutionarily conserved C-terminal region 8;(source:Araport11)
AT1G79270.2	protein_coding			evolutionarily conserved C-terminal region 8;(source:Araport11)
AT5G58787.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G57090.2	protein_coding		Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G79270.4	protein_coding			evolutionarily conserved C-terminal region 8;(source:Araport11)
AT1G02880.6	protein_coding		Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.	thiamin pyrophosphokinase1;(source:Araport11)
AT3G21500.3	protein_coding		Encodes a protein that has very high sequence similarity to 1-deoxy-D-xylulose-5-phosphate synthase proteins but does not possess appreciable activity in vitro.  It is not likely to play a major role in isoprenoid biosynthesis.	1-deoxy-D-xylulose 5-phosphate synthase 1;(source:Araport11)
AT1G02880.5	protein_coding		Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.	thiamin pyrophosphokinase1;(source:Araport11)
AT1G11570.4	protein_coding			NTF2-like protein;(source:Araport11)
AT1G52530.2	protein_coding			Hus1-like protein;(source:Araport11)
AT4G15215.10	protein_coding			pleiotropic drug resistance 13;(source:Araport11)
AT2G24140.2	protein_coding			myosin-J heavy chain-like protein (Protein of unknown function, DUF593);(source:Araport11)
AT4G07175.1	long_noncoding_rna			None;(source:Araport11)
AT5G01675.6	antisense_long_noncoding_rna		Small RNA-induced heterochromatic region at the end of FLC which produces cold-induced FLC antisense lncRNA transcripts. Represses FLOWERING LOCUS C (FLC) transcription with increased H3K27me3 and decreased H3K36me3 levels in response to cold temperatures. FCA binding of COOLAIR and SSU72 is critical for PRC2 enrichment and H3K27me3 deposition.	Natural antisense transcript overlaps with AT5G10140 (FLC);(source:Araport11)
AT2G24140.3	protein_coding			myosin-J heavy chain-like protein (Protein of unknown function, DUF593);(source:Araport11)
AT5G39715.1	protein_coding			lysine histidine transporter-like protein;(source:Araport11)
AT3G09540.3	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT5G07125.1	long_noncoding_rna			None;(source:Araport11)
AT1G08703.1	long_noncoding_rna			None;(source:Araport11)
AT1G09570.5	protein_coding		Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism.  Requires FHY1 for nuclear accumulation.	phytochrome A;(source:Araport11)
AT3G14630.2	protein_coding		putative cytochrome P450	cytochrome P450, family 72, subfamily A, polypeptide 9;(source:Araport11)
AT5G61920.4	protein_coding			FLX-like protein;(source:Araport11)
AT1G63830.4	protein_coding			PLAC8 family protein;(source:Araport11)
AT1G63830.5	protein_coding			PLAC8 family protein;(source:Araport11)
AT4G03225.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G27350.uORF1	uORF			Derives_from AT2G27350;(source:Araport11)
AT5G36180.2	protein_coding			serine carboxypeptidase-like 1;(source:Araport11)
AT5G36180.3	protein_coding			serine carboxypeptidase-like 1;(source:Araport11)
AT5G36180.4	protein_coding			serine carboxypeptidase-like 1;(source:Araport11)
AT5G36180.5	protein_coding			serine carboxypeptidase-like 1;(source:Araport11)
AT1G54660.5	pseudogene		Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of terpene synthase 21;(source:Araport11)
AT1G54660.4	pseudogene		Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of terpene synthase 21;(source:Araport11)
AT1G07187.1	long_noncoding_rna			None;(source:Araport11)
AT2G47440.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G54660.3	pseudogene		Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of terpene synthase 21;(source:Araport11)
AT1G54660.2	pseudogene		Possibly not a pseudogene based on evidence for transcription (RNA-seq) and translation (Ribo-seq) described in PMID:27791167	pseudogene of terpene synthase 21;(source:Araport11)
AT5G56510.5	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.	pumilio 12;(source:Araport11)
AT5G56510.4	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.	pumilio 12;(source:Araport11)
AT1G01060.7	protein_coding		LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	Homeodomain-like superfamily protein;(source:Araport11)
AT5G56510.6	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.	pumilio 12;(source:Araport11)
AT1G05033.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G13740;(source:Araport11)
AT3G53210.3	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G56510.3	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.	pumilio 12;(source:Araport11)
AT5G56510.2	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.	pumilio 12;(source:Araport11)
AT1G04153.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G02870;(source:Araport11)
AT3G47890.2	protein_coding			Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT3G12130.2	protein_coding		KHZ1 is a CCCH zinc-finger and KH domain protein belonging to the  VII subfamily. It is expressed throughout the plant. Highly similar to KHZ2.  khz1 mutants are late flowering and double mutants with khz2 are even more late flowering. Overexpression leads to increased rates of leaf senescence.	KH domain-containing protein / zinc finger (CCCH type) family protein;(source:Araport11)
AT4G05775.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G10270;(source:Araport11)
AT1G01060.8	protein_coding		LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	Homeodomain-like superfamily protein;(source:Araport11)
AT3G02635.1	long_noncoding_rna			None;(source:Araport11)
AT5G09015.1	long_noncoding_rna			None;(source:Araport11)
AT4G09445.1	long_noncoding_rna			None;(source:Araport11)
AT3G17700.2	protein_coding		cyclic nucleotide-binding transporter 1, member of a family  of cyclic nucleotide gated channels.The mRNA is cell-to-cell mobile.	cyclic nucleotide-binding transporter 1;(source:Araport11)
AT5G62880.2	protein_coding		ROP (Rho of plant GTPases) family member involved in cell wall patterning. Locally activated to form plasma membrane domains, which direct formation of cell wall pits in metaxylem vessel cells through interaction with cortical microtubules. Pattern formation of cell wall pits is governed by ROP activation via a reaction-difusion mechanism. Patterning involves active ROP1 recruiting BDR1 to the plasma membrane in pit regions. BRD1 in turn recruits the actin binding protein WAL.	RAC-like 10;(source:Araport11)
AT1G09733.1	long_noncoding_rna			None;(source:Araport11)
AT5G11350.2	protein_coding		Deadenylase.	DNAse I-like superfamily protein;(source:Araport11)
AT4G39820.2	protein_coding		Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G04605.1	long_noncoding_rna			None;(source:Araport11)
AT5G47590.2	protein_coding			Heat shock protein HSP20/alpha crystallin family;(source:Araport11)
AT4G08955.1	long_noncoding_rna			None;(source:Araport11)
AT2G40316.3	protein_coding			autophagy-like protein;(source:Araport11)
AT3G19670.4	protein_coding		Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold  for RNA processing machineries. Ubiquitously  expressed and localize to the nucleus.	pre-mRNA-processing protein 40B;(source:Araport11)
AT3G19670.3	protein_coding		Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold  for RNA processing machineries. Ubiquitously  expressed and localize to the nucleus.	pre-mRNA-processing protein 40B;(source:Araport11)
AT3G02655.1	long_noncoding_rna			None;(source:Araport11)
AT1G34770.5	protein_coding		Encodes a nuclear localized,  structural subunit of the SMC 5/6 complex and a non- SMC element. Loss of function results in abnormal cell division and embryo lethality. Analysis of partially rescued lines indicates a role in double strand break DNA repair. Similar phenotype to NSE1 which it also interacts with.Maintains cell viability together with NSE1 during early embryogenesis.	melanoma-associated antigen G1-like protein;(source:Araport11)
AT5G28010.2	protein_coding			Polyketide cyclase/dehydrase and lipid transport superfamily protein;(source:Araport11)
AT5G39775.1	protein_coding			Gag-Pol polyprotein/retrotransposon;(source:Araport11)
AT5G54700.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT1G26680.6	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT4G04510.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 38;(source:Araport11)
AT1G26680.4	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT1G26680.5	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT1G26680.2	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT1G26680.3	protein_coding			transcriptional factor B3 family protein;(source:Araport11)
AT1G05927.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G25211;(source:Araport11)
AT5G57569.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G59280.2	protein_coding		Encodes the ortholog of yeast PAM16, part of the mitochondrial inner membrane protein import motor. Single mutant plants exhibit a smaller size and enhanced resistance against virulent pathogens. They also display elevated reactive oxygen species (ROS) accumulation.	Protein Transporter, Pam16;(source:Araport11)
AT1G26130.4	protein_coding			ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT3G00390.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G09745.1	long_noncoding_rna			None;(source:Araport11)
AT4G15510.5	protein_coding		A nuclear-encoded thylakoid lumenal protein that is associated with photosystem I (PSI) but is not an integral subunit of PSI.  It is an PSI assembly factor that assists the proper folding and integration of PsaB and PsaA into the thylakoid membrane. It is involved in the assembly of PSI reaction center heterodimer core.	Photosystem II reaction center PsbP family protein;(source:Araport11)
AT4G15510.4	protein_coding		A nuclear-encoded thylakoid lumenal protein that is associated with photosystem I (PSI) but is not an integral subunit of PSI.  It is an PSI assembly factor that assists the proper folding and integration of PsaB and PsaA into the thylakoid membrane. It is involved in the assembly of PSI reaction center heterodimer core.	Photosystem II reaction center PsbP family protein;(source:Araport11)
AT1G59990.2	protein_coding			DEA(D/H)-box RNA helicase family protein;(source:Araport11)
AT3G02345.1	long_noncoding_rna			None;(source:Araport11)
AT1G72840.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT4G22730.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT4G03275.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G06333.1	long_noncoding_rna			None;(source:Araport11)
AT1G09085.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G09865.1	antisense_rna			Natural antisense transcript overlaps with AT5G67310;(source:Araport11)
AT5G46410.3	protein_coding		Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).The mRNA is cell-to-cell mobile.	SCP1-like small phosphatase 4;(source:Araport11)
AT1G05023.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G13700;(source:Araport11)
AT5G09645.1	long_noncoding_rna			None;(source:Araport11)
AT3G22760.2	protein_coding		CXC domain containing TSO1-like protein 1. The gene is expressed in stamens, pollen mother cells, and immature ovules. Regulates fate transition and cell Divisions in the stomatal lineage.	Tesmin/TSO1-like CXC domain-containing protein;(source:Araport11)
AT2G03800.2	protein_coding		encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.	D-aminoacyl-tRNA deacylase;(source:Araport11)
AT2G00660.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G55250.5	protein_coding		Gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.	histone mono-ubiquitination 2;(source:Araport11)
AT2G37370.3	protein_coding			centrosomal protein of 135 kDa-like protein;(source:Araport11)
AT2G37370.2	protein_coding			centrosomal protein of 135 kDa-like protein;(source:Araport11)
AT1G09013.1	long_noncoding_rna			None;(source:Araport11)
AT1G45191.3	protein_coding			Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G45191.4	protein_coding			Glycosyl hydrolase superfamily protein;(source:Araport11)
AT1G09717.1	long_noncoding_rna			None;(source:Araport11)
AT1G45191.6	protein_coding			Glycosyl hydrolase superfamily protein;(source:Araport11)
AT2G37370.4	protein_coding			centrosomal protein of 135 kDa-like protein;(source:Araport11)
AT1G29535.4	protein_coding			hypothetical protein;(source:Araport11)
AT3G13170.2	protein_coding		Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA).  Required for meiotic recombination.  AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by  3 h a majority (80%) of meiocytes at this time point  contain >50 foci. However, by 5 h, AtSPO11-1 foci are  no longer detectable. This suggests that the protein undergoes  a rapid cycle of accumulation and disappearance  in meiocytes over a period of between 1 and 5 h post-S  phase.	Spo11/DNA topoisomerase VI, subunit A protein;(source:Araport11)
AT1G15790.4	protein_coding			mediator of RNA polymerase II transcription subunit 15a-like protein;(source:Araport11)
AT1G15790.5	protein_coding			mediator of RNA polymerase II transcription subunit 15a-like protein;(source:Araport11)
AT1G15790.3	protein_coding			mediator of RNA polymerase II transcription subunit 15a-like protein;(source:Araport11)
AT1G29535.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G29535.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G17530.7	protein_coding			phosphoglucosamine mutase family protein;(source:Araport11)
AT5G65575.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G65580;(source:Araport11)
AT4G31800.3	protein_coding		Pathogen-induced transcription factor. Binds W-box sequences  in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18  enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both  P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.The mRNA is cell-to-cell mobile.	WRKY DNA-binding protein 18;(source:Araport11)
AT2G16770.2	protein_coding		Basic-region leucine zipper (bZIP23) transcription factor involved in the adaptation to zinc deficiency. Binds ZDRE motifs.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT5G05080.4	protein_coding			ubiquitin-conjugating enzyme 22;(source:Araport11)
AT5G05080.3	protein_coding			ubiquitin-conjugating enzyme 22;(source:Araport11)
AT5G06695.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G45040;(source:Araport11)
AT5G06695.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G45040;(source:Araport11)
AT5G06695.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G45040;(source:Araport11)
AT2G26210.6	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT2G26210.7	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT3G16500.2	protein_coding		phytochrome-associated protein 1 (PAP1)	phytochrome-associated protein 1;(source:Araport11)
AT2G26210.5	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT5G09910.2	protein_coding			Ras-related small GTP-binding family protein;(source:Araport11)
AT4G35300.6	protein_coding			tonoplast monosaccharide transporter2;(source:Araport11)
AT4G02825.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G00390.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G02945.1	long_noncoding_rna			None;(source:Araport11)
AT2G16750.2	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT3G00390.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G00390.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G08473.1	long_noncoding_rna			None;(source:Araport11)
AT5G15533.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06357.1	long_noncoding_rna			None;(source:Araport11)
AT5G02150.3	protein_coding		Encodes one of the Arabidopsis orthologs of the human Hsp70-binding protein 1 (HspBP-1) and yeast Fes1p: Fes1A (AT3G09350), Fes1B (AT3G53800), Fes1C (AT5G02150).	Fes1C;(source:Araport11)
AT3G05140.2	protein_coding			ROP binding protein kinases 2;(source:Araport11)
AT2G37678.2	protein_coding		Positive regulator of photomorphogenesis in far-red light. Most abundant in young seedlings in the dark. Downregulated in the light and older as plants develop. Localized in the nucleus and the cytoplasm. Nuclear localization strongest in the dark. Degraded through the 26S proteasome. Regulated by PHYA. It is specifically required for the light-regulated nuclear accumulation of phyA ( but not phyB) likely by shuttling PHYA into the nucleus.	far-red elongated hypocotyl 1;(source:Araport11)
AT3G07890.4	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT4G29990.2	protein_coding			Leucine-rich repeat transmembrane protein kinase protein;(source:Araport11)
AT5G00580.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G07890.5	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT1G04120.3	protein_coding		encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C.	multidrug resistance-associated protein 5;(source:Araport11)
AT2G44350.4	protein_coding		encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA.	Citrate synthase family protein;(source:Araport11)
AT1G02530.2	protein_coding			P-glycoprotein 12;(source:Araport11)
AT4G15563.6	protein_coding			F-box-like protein;(source:Araport11)
AT4G18490.6	protein_coding			hypothetical protein;(source:Araport11)
AT1G07613.1	miRNA_primary_transcript			microRNA ath-MIR5636 precursor;(source:Araport11)
AT5G20030.2	protein_coding			Plant Tudor-like RNA-binding protein;(source:Araport11)
AT4G13100.9	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G31780.3	protein_coding		Encodes an A-type monogalactosyldiacylglycerol (MGDG) synthase. It represents the isoform responsible for the bulk of MGDG synthesis in Arabidopsis.	monogalactosyl diacylglycerol synthase 1;(source:Araport11)
AT4G07145.1	small_nuclear_rna			U1;(source:Araport11)
AT4G09300.5	protein_coding			LisH and RanBPM domains containing protein;(source:Araport11)
AT1G79830.5	protein_coding		This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast.  A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).	golgin Putative 5;(source:Araport11)
AT3G08370.1	long_noncoding_rna			None;(source:Araport11)
AT2G13105.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G20350.8	protein_coding			oxidoreductase;(source:Araport11)
AT4G20350.7	protein_coding			oxidoreductase;(source:Araport11)
AT4G20350.6	protein_coding			oxidoreductase;(source:Araport11)
AT4G20350.5	protein_coding			oxidoreductase;(source:Araport11)
AT4G20350.4	protein_coding			oxidoreductase;(source:Araport11)
AT3G02470.uORF1-1	uORF			Derives_from AT3G02470;(source:Araport11)
AT1G23645.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G23645.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G02470.uORF1-2	uORF			Derives_from AT3G02470;(source:Araport11)
AT4G02510.4	protein_coding		An integral membrane GTPase that functions as a transit-sequence receptor required for the import of proteins necessary for chloroplast biogenesis. Located in the outer chloroplast membrane. Phosphorylation of the G-domains regulate translocon assembly.The mRNA is cell-to-cell mobile.	translocon at the outer envelope membrane of chloroplasts 159;(source:Araport11)
AT1G59312.2	protein_coding			Inositol-pentakisphosphate 2-kinase family protein;(source:Araport11)
AT3G56570.2	protein_coding			SET domain-containing protein;(source:Araport11)
AT5G08630.3	protein_coding			DDT domain-containing protein;(source:Araport11)
AT5G08630.2	protein_coding			DDT domain-containing protein;(source:Araport11)
AT4G02510.3	protein_coding		An integral membrane GTPase that functions as a transit-sequence receptor required for the import of proteins necessary for chloroplast biogenesis. Located in the outer chloroplast membrane. Phosphorylation of the G-domains regulate translocon assembly.The mRNA is cell-to-cell mobile.	translocon at the outer envelope membrane of chloroplasts 159;(source:Araport11)
AT4G02510.2	protein_coding		An integral membrane GTPase that functions as a transit-sequence receptor required for the import of proteins necessary for chloroplast biogenesis. Located in the outer chloroplast membrane. Phosphorylation of the G-domains regulate translocon assembly.The mRNA is cell-to-cell mobile.	translocon at the outer envelope membrane of chloroplasts 159;(source:Araport11)
AT1G11070.3	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G01490.2	protein_coding		Encodes a phytanoyl-CoA 2-hydroxylase (PAHX).The mRNA is cell-to-cell mobile.	phytanoyl-CoA dioxygenase (PhyH) family protein;(source:Araport11)
AT5G39530.2	protein_coding			hypothetical protein (DUF1997);(source:Araport11)
AT1G11070.5	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT1G11070.4	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT2G00680.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G09815.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G62590;(source:Araport11)
AT1G08457.1	long_noncoding_rna			None;(source:Araport11)
AT3G25585.6	protein_coding		aminoalcoholphosphotransferase (AAPT2)	aminoalcoholphosphotransferase;(source:Araport11)
AT3G23123.1	protein_coding			transmembrane protein;(source:Araport11)
AT4G15563.4	protein_coding			F-box-like protein;(source:Araport11)
AT3G27830.2	protein_coding		50S ribosomal protein L12-AThe mRNA is cell-to-cell mobile.	ribosomal protein L12-A;(source:Araport11)
AT4G08280.2	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT2G46200.3	protein_coding			U11/U12 small nuclear ribonucleoprotein;(source:Araport11)
AT4G29658.2	protein_coding			prenylated RAB acceptor 1.C;(source:Araport11)
AT2G46200.4	protein_coding			U11/U12 small nuclear ribonucleoprotein;(source:Araport11)
AT1G76310.4	protein_coding		core cell cycle genes	CYCLIN B2;(source:Araport11)
AT1G80360.3	protein_coding		Encodes a methionine-specific aminotransferase that uses the ethylene biosynthetic intermediate methionine as an  amino donor and the auxin biosynthetic intermediate indole-3-pyruvic acid as an amino acceptor to produce L-tryptophan  and 2-oxo-4-methylthiobutyric acid. These actions allow VAS1 to coordinate both auxin and ethylene biosynthesis.  It functions downstream of TAA1/SAV3 but upstream of YUCs to negatively modulate IAA biosynthesis directly by altering the 3-IPA pool.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT1G76310.3	protein_coding		core cell cycle genes	CYCLIN B2;(source:Araport11)
AT1G76310.2	protein_coding		core cell cycle genes	CYCLIN B2;(source:Araport11)
AT1G80360.2	protein_coding		Encodes a methionine-specific aminotransferase that uses the ethylene biosynthetic intermediate methionine as an  amino donor and the auxin biosynthetic intermediate indole-3-pyruvic acid as an amino acceptor to produce L-tryptophan  and 2-oxo-4-methylthiobutyric acid. These actions allow VAS1 to coordinate both auxin and ethylene biosynthesis.  It functions downstream of TAA1/SAV3 but upstream of YUCs to negatively modulate IAA biosynthesis directly by altering the 3-IPA pool.	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT5G41340.2	protein_coding		Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated.	ubiquitin conjugating enzyme 4;(source:Araport11)
AT1G62350.3	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G21210.2	protein_coding		Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers.	SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G57880.4	protein_coding		Required for maintenance of inflorescence and shoot SAMs and normal development of the derived vascular cambium, functions in the SAM to promote continuous organogenesis, affects SAM development through STM, where it affects intracellular localization of STM in SAM cells in the peripheral region and prevents STM localization toward the cell wall of SAM cells in the peripheral region.	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein;(source:Araport11)
AT2G39355.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT3G57880.2	protein_coding		Required for maintenance of inflorescence and shoot SAMs and normal development of the derived vascular cambium, functions in the SAM to promote continuous organogenesis, affects SAM development through STM, where it affects intracellular localization of STM in SAM cells in the peripheral region and prevents STM localization toward the cell wall of SAM cells in the peripheral region.	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein;(source:Araport11)
AT3G57880.3	protein_coding		Required for maintenance of inflorescence and shoot SAMs and normal development of the derived vascular cambium, functions in the SAM to promote continuous organogenesis, affects SAM development through STM, where it affects intracellular localization of STM in SAM cells in the peripheral region and prevents STM localization toward the cell wall of SAM cells in the peripheral region.	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein;(source:Araport11)
AT1G13143.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G43810.3	protein_coding			Small nuclear ribonucleoprotein family protein;(source:Araport11)
AT5G28530.3	protein_coding			FAR1-related sequence 10;(source:Araport11)
AT2G12480.4	protein_coding			serine carboxypeptidase-like 43;(source:Araport11)
AT3G09215.1	novel_transcribed_region			novel transcribed region; detected in root apical meristem, receptacle, leaf, light-grown seedling, aerial;(source:Araport11)
AT5G01060.3	protein_coding			kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT5G01060.2	protein_coding			kinase with tetratricopeptide repeat domain-containing protein;(source:Araport11)
AT1G28490.3	protein_coding		Encodes SYP61, one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. SYP61 and SYP121 coordinate the trafficking of plasma membrane aquaporin PIP2;7 to modulate the cell membrane water permeability.	syntaxin of plants 61;(source:Araport11)
AT2G12480.3	protein_coding			serine carboxypeptidase-like 43;(source:Araport11)
AT2G38780.3	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT1G76900.3	protein_coding		Member of plant TLP family. Contains terminal F-box domain, interacts with ASK proteins. Tethered to the PM.	tubby like protein 1;(source:Araport11)
AT3G01545.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G05010;(source:Araport11)
AT2G38780.2	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT4G15563.2	protein_coding			F-box-like protein;(source:Araport11)
AT2G29200.2	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.	pumilio 1;(source:Araport11)
AT4G31720.3	protein_coding		Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15)	TBP-associated factor II 15;(source:Araport11)
AT4G06170.1	long_noncoding_rna			None;(source:Araport11)
AT3G43920.5	protein_coding		Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.	dicer-like 3;(source:Araport11)
AT4G12740.3	protein_coding			HhH-GPD base excision DNA repair family protein;(source:Araport11)
AT1G04467.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G06460;(source:Araport11)
AT5G19660.3	protein_coding		S1P appears to function as a Golgi-localized subtilase and to help protect seedlings against salt and osmotic stress. The roots of s1p-3 mutants are hypersensitive to NaCl, KCl, LiCl, and mannitol. Several salt-stress responsive genes show weaker induction in an s1P-3 mutant background. The proteolytic cleavage of the bZIP17 transcription factor depends on S1P in vitro. And there is evidence that S1P can cleave bZIP17 in vitro.	SITE-1 protease;(source:Araport11)
AT1G09975.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G15215.9	protein_coding			pleiotropic drug resistance 13;(source:Araport11)
AT2G22670.5	protein_coding		Encodes a transcriptional repressor of the auxin response that is auxin inducible and is involved in lateral root formation.The mRNA is cell-to-cell mobile.	indoleacetic acid-induced protein 8;(source:Araport11)
AT3G03355.1	long_noncoding_rna			None;(source:Araport11)
AT2G38780.5	protein_coding			cytochrome C oxidase subunit;(source:Araport11)
AT1G58460.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G02485.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G14130.2	protein_coding			Peroxidase superfamily protein;(source:Araport11)
AT5G02795.1	long_noncoding_rna			None;(source:Araport11)
AT5G00635.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G16640.3	protein_coding			multimeric translocon complex in the outer envelope membrane 132;(source:Araport11)
AT5G22145.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G62000.5	protein_coding		Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation.Phosphorylation of ARF2 relieves repression of transcription of HAK5 and thereby promotes potassium uptake. The mRNA is cell-to-cell mobile.	auxin response factor 2;(source:Araport11)
AT5G15310.3	protein_coding		Member of the R2R3 factor gene family.	myb domain protein 16;(source:Araport11)
AT3G03115.1	long_noncoding_rna			None;(source:Araport11)
AT4G14695.3	protein_coding			Uncharacterized protein family (UPF0041);(source:Araport11)
AT5G20935.2	protein_coding			DUF3148 family protein;(source:Araport11)
AT4G03575.1	long_noncoding_rna			None;(source:Araport11)
AT1G52360.3	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT3G48580.3	protein_coding			xyloglucan endotransglucosylase/hydrolase 11;(source:Araport11)
AT1G08925.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00655.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00655.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G08925.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G19400.4	protein_coding		Encodes SMG7, a protein that possesses an evolutionarily conserved EST1 domain and exhibits strong homology to human SMG6 (EST1A) and SMG7 (EST1C) proteins.  SMG7 plays an evolutionarily conserved role in nonsense-mediated RNA decay (NMD). Required for exit from meiosis.  Hypomorphic smg7 alleles render mutant plants sterile by causing an unusual cell-cycle arrest in anaphase II that is characterized by delayed chromosome decondensation and aberrant rearrangement of the meiotic spindle. Disruption of SMG7 causes embryonic lethality.	Telomerase activating protein Est1;(source:Araport11)
AT5G19400.5	protein_coding		Encodes SMG7, a protein that possesses an evolutionarily conserved EST1 domain and exhibits strong homology to human SMG6 (EST1A) and SMG7 (EST1C) proteins.  SMG7 plays an evolutionarily conserved role in nonsense-mediated RNA decay (NMD). Required for exit from meiosis.  Hypomorphic smg7 alleles render mutant plants sterile by causing an unusual cell-cycle arrest in anaphase II that is characterized by delayed chromosome decondensation and aberrant rearrangement of the meiotic spindle. Disruption of SMG7 causes embryonic lethality.	Telomerase activating protein Est1;(source:Araport11)
AT4G08725.1	long_noncoding_rna			None;(source:Araport11)
AT5G04245.1	long_noncoding_rna			None;(source:Araport11)
AT3G28956.12	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT5G19210.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G28956.10	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT3G28956.11	protein_coding			RNA polymerase II, Rpb4, core protein;(source:Araport11)
AT3G63500.3	protein_coding		Encodes a PHD-finger protein that, with TTA2, is redundantly required for MP-dependent embryonic root meristem initiation.	fibronectin type III domain protein (DUF1423);(source:Araport11)
AT2G42865.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G06705.1	novel_transcribed_region			novel transcribed region; detected in root, receptacle, dark-grown seedling, flower;(source:Araport11)
AT3G08705.1	antisense_rna			Natural antisense transcript overlaps with AT3G56750;(source:Araport11)
AT1G78750.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT3G57790.2	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT2G33815.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33810;(source:Araport11)
AT2G26790.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT3G08860.2	protein_coding		Encodes a protein that is predicted to have beta-alanine aminotransferase activity.	PYRIMIDINE 4;(source:Araport11)
AT2G03885.1	long_noncoding_rna			None;(source:Araport11)
AT1G09567.1	long_noncoding_rna			None;(source:Araport11)
AT3G26237.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G28770.2	protein_coding			transmembrane protein, putative (DUF1216);(source:Araport11)
AT3G28770.3	protein_coding			transmembrane protein, putative (DUF1216);(source:Araport11)
AT4G05650.1	long_noncoding_rna			None;(source:Araport11)
AT2G05395.1	long_noncoding_rna			None;(source:Araport11)
AT5G05435.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G05430;(source:Araport11)
AT1G68100.2	protein_coding		member of IAA-alanine resistance protein 1	ZIP metal ion transporter family;(source:Araport11)
AT5G13295.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G07787.1	long_noncoding_rna			None;(source:Araport11)
AT5G08660.3	protein_coding			D-lactate dehydrogenase (DUF668);(source:Araport11)
AT3G56960.2	protein_coding		Encodes a protein with phosphatidylinositol-4-phosphate 5-kinase activity that plays a role in pollen tip growth. The enzyme localizes to the apical plasma membrane and adjacent cytosolic region of pollen tubes. Overexpression of this gene leads to increased deposition of pectin in the cell wall at the tip of the pollen tube and causes altered pollen tube morphology.	phosphatidyl inositol monophosphate 5 kinase 4;(source:Araport11)
AT4G03125.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G21055.2	protein_coding		Encodes photosystem II 5 kD protein subunit PSII-T. This is a nuclear-encoded gene (PsbTn) which also has a plastid-encoded paralog (PsbTc).	photosystem II subunit T;(source:Araport11)
AT5G05435.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G05430;(source:Araport11)
AT3G12250.7	protein_coding		basic leucine zipper transcription factor involved in the activation of SA-responsive genes.	TGACG motif-binding factor 6;(source:Araport11)
AT5G61550.3	protein_coding			U-box domain-containing protein kinase family protein;(source:Araport11)
AT4G31390.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G10745.2	protein_coding			transmembrane protein;(source:Araport11)
AT2G16140.3	transposable_element_gene			None;(source:Araport11)
AT5G03190.uORF1	uORF			Derives_from AT5G03190;(source:Araport11)
AT3G58160.5	protein_coding		Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G15745.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G16140.2	transposable_element_gene			None;(source:Araport11)
AT2G08705.1	long_noncoding_rna			None;(source:Araport11)
AT5G38780.2	protein_coding		SABATH methyltransferase.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G16490.2	protein_coding		Member of the R2R3 factor gene family.	myb domain protein 58;(source:Araport11)
AT5G61530.5	protein_coding			small G protein family protein / RhoGAP family protein;(source:Araport11)
AT5G61530.4	protein_coding			small G protein family protein / RhoGAP family protein;(source:Araport11)
AT3G11910.4	protein_coding			ubiquitin-specific protease 13;(source:Araport11)
AT2G34170.3	protein_coding			hypothetical protein (DUF688);(source:Araport11)
AT3G11910.3	protein_coding			ubiquitin-specific protease 13;(source:Araport11)
AT4G36000.2	protein_coding			Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT2G02150.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G05735.1	long_noncoding_rna			None;(source:Araport11)
AT2G34170.4	protein_coding			hypothetical protein (DUF688);(source:Araport11)
AT5G19473.2	protein_coding			RPM1-interacting protein 4 (RIN4) family protein;(source:Araport11)
AT4G38420.3	protein_coding			SKU5 similar 9;(source:Araport11)
AT4G26582.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G26590;(source:Araport11)
AT1G07503.1	long_noncoding_rna			None;(source:Araport11)
AT2G09010.1	long_noncoding_rna			None;(source:Araport11)
AT1G07343.1	long_noncoding_rna			None;(source:Araport11)
AT1G55080.2	protein_coding			mediator of RNA polymerase II transcription subunit-like protein;(source:Araport11)
AT5G37340.4	protein_coding			ZPR1 zinc-finger domain protein;(source:Araport11)
AT5G02265.1	long_noncoding_rna			None;(source:Araport11)
AT2G00740.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G34770.6	protein_coding		Encodes a nuclear localized,  structural subunit of the SMC 5/6 complex and a non- SMC element. Loss of function results in abnormal cell division and embryo lethality. Analysis of partially rescued lines indicates a role in double strand break DNA repair. Similar phenotype to NSE1 which it also interacts with.Maintains cell viability together with NSE1 during early embryogenesis.	melanoma-associated antigen G1-like protein;(source:Araport11)
AT1G09577.1	long_noncoding_rna			None;(source:Araport11)
AT1G17450.3	protein_coding			B-block binding subunit of TFIIIC;(source:Araport11)
AT5G15845.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G15850;(source:Araport11)
AT4G03925.1	small_nucleolar_rna			None;(source:Araport11)
AT5G08165.1	long_noncoding_rna			None;(source:Araport11)
AT4G11670.4	protein_coding			DNA topoisomerase 4 subunit B (DUF810);(source:Araport11)
AT1G53690.2	protein_coding		Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.	DNA directed RNA polymerase, 7 kDa subunit;(source:Araport11)
AT4G11670.2	protein_coding			DNA topoisomerase 4 subunit B (DUF810);(source:Araport11)
AT4G11670.3	protein_coding			DNA topoisomerase 4 subunit B (DUF810);(source:Araport11)
AT4G31570.2	protein_coding			nucleoporin;(source:Araport11)
AT5G01825.1	long_noncoding_rna			None;(source:Araport11)
AT1G09983.1	long_noncoding_rna			None;(source:Araport11)
AT2G09265.1	long_noncoding_rna			None;(source:Araport11)
AT4G11610.3	protein_coding			C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT1G48210.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G72855.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G72860;(source:Araport11)
AT1G72855.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G72860;(source:Araport11)
AT1G08627.1	long_noncoding_rna			None;(source:Araport11)
AT5G08250.2	protein_coding			Cytochrome P450 superfamily protein;(source:Araport11)
AT1G72855.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G72860;(source:Araport11)
AT5G15845.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G15850;(source:Araport11)
AT5G55840.2	protein_coding			PPR superfamily protein;(source:Araport11)
AT5G55840.3	protein_coding			PPR superfamily protein;(source:Araport11)
AT2G24645.2	protein_coding			Transcriptional factor B3 family protein;(source:Araport11)
AT2G24645.3	protein_coding			Transcriptional factor B3 family protein;(source:Araport11)
AT1G33790.5	protein_coding			jacalin lectin family protein;(source:Araport11)
AT3G13225.3	protein_coding			WW domain-containing protein;(source:Araport11)
AT2G24645.4	protein_coding			Transcriptional factor B3 family protein;(source:Araport11)
AT3G04385.1	long_noncoding_rna			None;(source:Araport11)
AT5G05400.3	protein_coding			LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT3G58720.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G18670.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT4G20050.3	protein_coding		Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.	Pectin lyase-like superfamily protein;(source:Araport11)
AT3G58720.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G05435.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial;(source:Araport11)
AT5G54110.2	protein_coding		Encodes a highly polar protein with more than 60% hydrophilic amino acid residues that is associated with the plasma membrane.  It has limited secondary structure similarity to VAP-33 from Aplysia, which may be involved in membrane trafficking.The mRNA is cell-to-cell mobile.	membrane-associated mannitol-induced;(source:Araport11)
AT5G05435.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G05430;(source:Araport11)
AT3G05435.2	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial;(source:Araport11)
AT4G06215.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G14710;(source:Araport11)
AT5G00740.1	long_noncoding_rna			None;(source:Araport11)
AT3G01755.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G05770;(source:Araport11)
AT2G08095.1	long_noncoding_rna			None;(source:Araport11)
AT1G67180.2	protein_coding			zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein;(source:Araport11)
AT1G71866.2	protein_coding			EPIDERMAL PATTERNING FACTOR-like protein;(source:Araport11)
AT2G42300.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G40800.2	protein_coding			import inner membrane translocase subunit;(source:Araport11)
AT1G78690.4	protein_coding		Encodes a lysoglycerophospholipid O-acyltransferase that acylates 1-acyl lyso PE and 1-acyl lyso PG but not PE or PG.	Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT2G35130.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G78690.2	protein_coding		Encodes a lysoglycerophospholipid O-acyltransferase that acylates 1-acyl lyso PE and 1-acyl lyso PG but not PE or PG.	Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT1G78690.3	protein_coding		Encodes a lysoglycerophospholipid O-acyltransferase that acylates 1-acyl lyso PE and 1-acyl lyso PG but not PE or PG.	Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT4G10730.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G04575.1	long_noncoding_rna			None;(source:Araport11)
AT2G19250.7	pseudogene			pseudogene of ALBINA 1;(source:Araport11)
AT3G18070.3	protein_coding			beta glucosidase 43;(source:Araport11)
AT5G20680.6	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 16;(source:Araport11)
AT1G28395.6	protein_coding			hypothetical protein;(source:Araport11)
AT1G06663.1	long_noncoding_rna			None;(source:Araport11)
AT5G64460.10	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT3G59530.3	protein_coding			Calcium-dependent phosphotriesterase superfamily protein;(source:Araport11)
AT4G04115.1	long_noncoding_rna			None;(source:Araport11)
AT2G13650.6	protein_coding		Encodes a Golgi-localized GDP-mannose transporter.  It can transport ADP-glucose in vitro.	golgi nucleotide sugar transporter 1;(source:Araport11)
AT2G13650.7	protein_coding		Encodes a Golgi-localized GDP-mannose transporter.  It can transport ADP-glucose in vitro.	golgi nucleotide sugar transporter 1;(source:Araport11)
AT3G00975.1	long_noncoding_rna			None;(source:Araport11)
AT2G13650.5	protein_coding		Encodes a Golgi-localized GDP-mannose transporter.  It can transport ADP-glucose in vitro.	golgi nucleotide sugar transporter 1;(source:Araport11)
AT5G60550.uORF1	uORF			Derives_from AT5G60550;(source:Araport11)
AT1G08637.1	long_noncoding_rna			None;(source:Araport11)
AT1G06647.1	miRNA_primary_transcript			microRNA ath-MIR5630b precursor;(source:Araport11)
AT3G22125.3	protein_coding			transmembrane protein;(source:Araport11)
AT3G18070.7	protein_coding			beta glucosidase 43;(source:Araport11)
AT4G07735.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G26970;(source:Araport11)
AT5G02855.1	long_noncoding_rna			None;(source:Araport11)
AT5G02685.1	long_noncoding_rna			None;(source:Araport11)
AT1G05773.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G22840;(source:Araport11)
AT1G09323.1	long_noncoding_rna			None;(source:Araport11)
AT3G23122.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G59130.3	protein_coding			Subtilase family protein;(source:Araport11)
AT2G24980.2	protein_coding			Proline-rich extensin-like family protein;(source:Araport11)
AT1G05303.1	long_noncoding_rna			None;(source:Araport11)
AT5G25800.2	protein_coding			Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G31950.2	protein_coding			Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
AT1G63430.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G15240.4	protein_coding		Encodes a member of the Arabidopsis sorting nexin family.	phox (PX) domain-containing protein;(source:Araport11)
AT1G15240.5	protein_coding		Encodes a member of the Arabidopsis sorting nexin family.	phox (PX) domain-containing protein;(source:Araport11)
AT5G01115.1	long_noncoding_rna			None;(source:Araport11)
AT3G60140.2	protein_coding		Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene Primes expression pattern is responding to the level of sugar in the cell.The mRNA is cell-to-cell mobile.	Glycosyl hydrolase superfamily protein;(source:Araport11)
AT5G56180.3	protein_coding		encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.	actin-related protein 8;(source:Araport11)
AT2G02410.11	protein_coding			yacP-like NYN domain protein;(source:Araport11)
AT2G08600.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT5G05735.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G63410.2	protein_coding			LURP-one-like protein (DUF567);(source:Araport11)
AT1G63410.3	protein_coding			LURP-one-like protein (DUF567);(source:Araport11)
AT1G02950.5	protein_coding		Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase F4;(source:Araport11)
AT5G22000.4	protein_coding		encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.	RING-H2 group F2A;(source:Araport11)
AT1G69610.2	protein_coding			zinc finger FYVE domain protein, putative (DUF1666);(source:Araport11)
AT1G69610.3	protein_coding			zinc finger FYVE domain protein, putative (DUF1666);(source:Araport11)
AT1G48050.2	protein_coding		Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of  the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.	Ku80 family protein;(source:Araport11)
AT5G55820.8	protein_coding		Encodes a plant ortholog of the inner centromere protein (INCENP), which is implicated in the control of chromosome segregation and cytokinesis in yeast and animals.  Required for female gametophytic cell specification and seed development.	inner centromere protein, ARK-binding region protein;(source:Araport11)
AT5G55820.9	protein_coding		Encodes a plant ortholog of the inner centromere protein (INCENP), which is implicated in the control of chromosome segregation and cytokinesis in yeast and animals.  Required for female gametophytic cell specification and seed development.	inner centromere protein, ARK-binding region protein;(source:Araport11)
AT1G21440.2	protein_coding			Phosphoenolpyruvate carboxylase family protein;(source:Araport11)
AT3G57170.2	protein_coding			N-acetylglucosaminyl transferase component family protein / Gpi1 family protein;(source:Araport11)
AT1G09985.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G26070.2	protein_coding		Encodes a predicted membrane protein.  Similar sequences are widely distributed and conserved in plants, animals and protists but absent in fungi and prokaryotes.  The sequence has no known motifs and no biological function has been assigned in any species.  In Arabidopsis, it appears to be involved in the negative regulation of the response to ethylene, is localized to the Golgi and is a positive regulator of ETR1.	protein REVERSION-TO-ETHYLENE SENSITIVITY-like protein (DUF778);(source:Araport11)
AT2G23550.3	protein_coding		Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.	methyl esterase 6;(source:Araport11)
AT5G55820.2	protein_coding		Encodes a plant ortholog of the inner centromere protein (INCENP), which is implicated in the control of chromosome segregation and cytokinesis in yeast and animals.  Required for female gametophytic cell specification and seed development.	inner centromere protein, ARK-binding region protein;(source:Araport11)
AT5G55820.3	protein_coding		Encodes a plant ortholog of the inner centromere protein (INCENP), which is implicated in the control of chromosome segregation and cytokinesis in yeast and animals.  Required for female gametophytic cell specification and seed development.	inner centromere protein, ARK-binding region protein;(source:Araport11)
AT1G08683.1	long_noncoding_rna			None;(source:Araport11)
AT1G09237.1	small_nuclear_rna			U5;(source:Araport11)
AT2G23550.4	protein_coding		Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.	methyl esterase 6;(source:Araport11)
AT5G04705.1	long_noncoding_rna			None;(source:Araport11)
ATMG09960.1	pre_trna			pre-tRNA tRNA-Thr (anticodon: TGT);(source:Araport11, TAIR10)
AT5G00990.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G04760;(source:Araport11)
AT4G06085.1	long_noncoding_rna			None;(source:Araport11)
AT1G21460.2	protein_coding			Nodulin MtN3 family protein;(source:Araport11)
AT1G05893.1	long_noncoding_rna			None;(source:Araport11)
AT1G10060.6	protein_coding		encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	branched-chain amino acid transaminase 1;(source:Araport11)
AT5G48290.3	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT5G51200.2	protein_coding			nuclear pore complex protein (DUF3414);(source:Araport11)
AT4G08505.1	long_noncoding_rna			None;(source:Araport11)
AT4G30600.2	protein_coding			signal recognition particle receptor alpha subunit family protein;(source:Araport11)
AT4G09550.2	protein_coding		Encodes a gamma-tubulin complex protein that plays a role in gamma-tubulin complex localization, spindle stability and chromosomal segregation.	AtGCP3 interacting protein 1;(source:Araport11)
AT1G16020.4	protein_coding			vacuolar fusion protein (DUF1712);(source:Araport11)
AT5G47480.2	protein_coding			RGPR-like protein;(source:Araport11)
AT2G31580.2	protein_coding		ICA1 is a nuclear localized member of the tRNA(His) guanylyl transferase superfamily. Loss of function alleles show increased sensitivity to growth at high temperatures defects in cell cycle progression and DNA repair.	tRNAHis guanylyltransferase;(source:Araport11)
AT4G16233.1	protein_coding			GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT1G55490.5	protein_coding		encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.	chaperonin 60 beta;(source:Araport11)
AT1G55490.4	protein_coding		encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.	chaperonin 60 beta;(source:Araport11)
AT1G08573.1	long_noncoding_rna			None;(source:Araport11)
AT2G43690.2	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT1G55490.3	protein_coding		encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.	chaperonin 60 beta;(source:Araport11)
AT1G02840.5	protein_coding		SR34/SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G07157.1	long_noncoding_rna			None;(source:Araport11)
AT4G05945.1	long_noncoding_rna			None;(source:Araport11)
AT1G10060.5	protein_coding		encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	branched-chain amino acid transaminase 1;(source:Araport11)
AT1G76010.2	protein_coding			Alba DNA/RNA-binding protein;(source:Araport11)
AT5G51200.3	protein_coding			nuclear pore complex protein (DUF3414);(source:Araport11)
AT4G02845.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G52430.2	protein_coding			Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11)
AT1G16020.3	protein_coding			vacuolar fusion protein (DUF1712);(source:Araport11)
AT3G08805.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G56950;(source:Araport11)
AT1G23800.2	protein_coding		Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.	aldehyde dehydrogenase 2B7;(source:Araport11)
AT4G00020.3	protein_coding		Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development and defense gene transcription during plant immune responses.	BREAST CANCER 2 like 2A;(source:Araport11)
AT1G16650.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G16650.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G00020.5	protein_coding		Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development and defense gene transcription during plant immune responses.	BREAST CANCER 2 like 2A;(source:Araport11)
AT4G00020.4	protein_coding		Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development and defense gene transcription during plant immune responses.	BREAST CANCER 2 like 2A;(source:Araport11)
AT5G14230.2	protein_coding			ankyrin;(source:Araport11)
AT4G09995.1	long_noncoding_rna			None;(source:Araport11)
AT4G30130.4	protein_coding			DUF630 family protein (DUF630 and DUF632);(source:Araport11)
AT4G04940.2	protein_coding			transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT1G61560.10	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	Seven transmembrane MLO family protein;(source:Araport11)
AT4G30130.3	protein_coding			DUF630 family protein (DUF630 and DUF632);(source:Araport11)
AT3G24140.2	protein_coding		Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. It fulfills its role through recruitment of  the Arabidopsis Retinoblastoma homologue, RETINOBLASTOMA-RELATED (RBR). Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage.  It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell. Its transcript levels change after inducing MUTE expression in a mute background.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G08895.1	antisense_rna			Natural antisense transcript overlaps with AT3G57340;(source:Araport11)
AT5G26180.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G20703.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G05557.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G20470;(source:Araport11)
AT3G05535.1	long_noncoding_rna			None;(source:Araport11)
AT2G19460.2	protein_coding			DUF3511 domain protein (DUF3511);(source:Araport11)
AT2G47630.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G47630.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G29020.2	protein_coding			Calcium-binding EF-hand family protein;(source:Araport11)
AT4G34860.3	protein_coding			Plant neutral invertase family protein;(source:Araport11)
AT4G30110.2	protein_coding		encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc	heavy metal atpase 2;(source:Araport11)
AT5G48970.2	protein_coding		Encodes a mitochondrial thiamin diphosphate carrier.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT4G01160.2	protein_coding		Encodes a member of LRB BTB family. It does not appear to participate in red light responses like LRB1 and LRB2. NO-interacting protein.	BTB/POZ/Kelch-associated protein;(source:Araport11)
AT4G28556.2	protein_coding		Encodes RIC7, the downstream effector of active Rop2 GTPase.	PAK-box/P21-Rho-binding family protein;(source:Araport11)
AT1G45249.10	protein_coding		Leucine zipper transcription factor that binds to the abscisic acid (ABA)?responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus.  Expressed constitutively in roots,  leaf vascular tissues, and hydathodes or  in all tissues under stress conditions. It Primes phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment.	abscisic acid responsive elements-binding factor 2;(source:Araport11)
AT3G22125.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G16040.2	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G22125.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G52200.3	protein_coding		Encodes an inhibitor of protein phosphatase one (PP1).	phosphoprotein phosphatase inhibitor;(source:Araport11)
AT5G17700.2	protein_coding			MATE efflux family protein;(source:Araport11)
AT2G00660.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G01570.5	protein_coding			plectin-like protein;(source:Araport11)
AT4G09215.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, receptacle, dark-grown seedling, light-grown seedling, flower, aerial;(source:Araport11)
AT1G68185.2	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT5G01570.2	protein_coding			plectin-like protein;(source:Araport11)
AT3G54230.5	protein_coding		Encodes a splicing factor SUA (suppressor of abi3-5), homologous to the human protein RBM5.  Controls alternative splicing of the developmental regulator ABI3.	suppressor of abi3-5;(source:Araport11)
AT5G65575.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G65580;(source:Araport11)
AT3G11745.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G61590.3	protein_coding		F-box protein that is involved in some aspect of regulation of gene silencing by miRNA. Loss of function mutations have increased levels of some miRNAs. Its activity depends on the presence of functional F-box.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G58160.2	protein_coding		Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G61590.4	protein_coding		F-box protein that is involved in some aspect of regulation of gene silencing by miRNA. Loss of function mutations have increased levels of some miRNAs. Its activity depends on the presence of functional F-box.	Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT1G18730.5	protein_coding		likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.The mRNA is cell-to-cell mobile.	NDH dependent flow 6;(source:Araport11)
AT2G39760.3	protein_coding		Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB/POZ/MATH-domains containing protein;(source:Araport11)
AT2G08440.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G31570;(source:Araport11)
AT4G06375.1	small_nuclear_rna			U4atac;(source:Araport11)
AT1G26230.3	protein_coding		Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins.  Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).	TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT4G09055.1	long_noncoding_rna			None;(source:Araport11)
AT1G76530.3	protein_coding			Auxin efflux carrier family protein;(source:Araport11)
AT1G76530.2	protein_coding			Auxin efflux carrier family protein;(source:Araport11)
AT1G26230.5	protein_coding		Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins.  Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).	TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT1G26230.4	protein_coding		Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins.  Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).	TCP-1/cpn60 chaperonin family protein;(source:Araport11)
AT3G13400.2	protein_coding			SKU5 similar 13;(source:Araport11)
AT5G11250.3	protein_coding		Encodes an atypical TIR-NBS-LRR protein that is involved in stress responses. Loss of function alleles overproduce stress hormones JA,SA, ABA, and ET.	Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G11250.2	protein_coding		Encodes an atypical TIR-NBS-LRR protein that is involved in stress responses. Loss of function alleles overproduce stress hormones JA,SA, ABA, and ET.	Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT2G02780.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G02780.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G08660.4	protein_coding			D-lactate dehydrogenase (DUF668);(source:Araport11)
AT3G28130.3	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G28130.4	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G08525.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G55530;(source:Araport11)
AT3G28130.6	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G08513.1	long_noncoding_rna			None;(source:Araport11)
AT5G07435.1	long_noncoding_rna			None;(source:Araport11)
AT3G21965.2	pseudogene			pseudogene of Receptor-like protein kinase-related family protein;(source:Araport11)
AT5G38743.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G79760.2	protein_coding		Identified as target of the AGL15 binding motif CArG.	downstream target of AGL15-4;(source:Araport11)
AT5G15630.5	protein_coding		Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family;(source:Araport11)
AT1G67780.2	protein_coding			Zinc-finger domain of monoamine-oxidase A repressor R1 protein;(source:Araport11)
AT4G04720.2	protein_coding		member of Calcium Dependent Protein Kinase	calcium-dependent protein kinase 21;(source:Araport11)
AT3G04995.1	long_noncoding_rna			None;(source:Araport11)
AT4G03015.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G14103.3	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT3G27110.3	protein_coding		PGM48 is a member of a plant specific clade of metallo-endopeptidase proteins. It is found in plastoglobules. Analysis of over-expression and loss of function phenotypes suggests PGM48 may have a role in positively regulating senescence.	Peptidase family M48 family protein;(source:Araport11)
AT5G06811.1	protein_coding			transcription termination factor family protein;(source:Araport11)
AT3G02225.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G09700;(source:Araport11)
AT4G07990.3	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G17150.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G06575.1	long_noncoding_rna			None;(source:Araport11)
AT5G41060.3	protein_coding			DHHC-type zinc finger family protein;(source:Araport11)
AT4G06365.1	long_noncoding_rna			None;(source:Araport11)
AT4G03725.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G00750;(source:Araport11)
AT3G05500.2	protein_coding		Encodes a protein that associates with lipid droplet surfaces and shares sequence homology with family of small rubber particle proteins. Plays dual roles as positive factors for tissue growth and development and in drought stress responses. The mRNA is cell-to-cell mobile.	Rubber elongation factor protein (REF);(source:Araport11)
AT1G35530.3	protein_coding		Encodes FANCM, a highly conserved helicase that functions as a major factor limiting meiotic crossover formation. It is not directly involved in the repair of DNA lesions but suppresses spontaneous somatic homologous recombination via a RecQ helicase (At-RECQ4A)-independent pathway.	DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT1G35530.4	protein_coding		Encodes FANCM, a highly conserved helicase that functions as a major factor limiting meiotic crossover formation. It is not directly involved in the repair of DNA lesions but suppresses spontaneous somatic homologous recombination via a RecQ helicase (At-RECQ4A)-independent pathway.	DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT5G55690.2	protein_coding		AGL47 MADS box gene.	MADS-box transcription factor family protein;(source:Araport11)
AT1G53790.3	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G03610.4	protein_coding			Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT4G15980.2	protein_coding			Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
AT3G19460.7	protein_coding			Reticulon family protein;(source:Araport11)
AT5G02975.1	other_rna			None;(source:Araport11)
AT3G23370.4	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G23370.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G08280.1	long_noncoding_rna			None;(source:Araport11)
AT1G79950.3	protein_coding		Encodes a homologue of human Regulator of Telomere Elongation Helicase1 (RTEL1). Plays a central role in the preservation of genome stability.	RAD3-like DNA-binding helicase protein;(source:Araport11)
AT1G64690.2	protein_coding		Encodes BRANCHLESS TRICHOME (BLT) involved in trichome development.  A large portion of the internal amino acid sequence of BLT is predicted to form a coiled-coil domain.  BLT mutants form branchless trichomes with blunt tips.	branchless trichome;(source:Araport11)
AT1G63150.2	protein_coding		Transacting siRNA generating locus.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G00895.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G03020;(source:Araport11)
AT4G06770.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G18370;(source:Araport11)
AT4G17150.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G16500.2	protein_coding			Cystatin/monellin superfamily protein;(source:Araport11)
AT5G09935.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT5G22150.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G17150.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G74180.2	protein_coding			receptor like protein 14;(source:Araport11)
AT2G09875.1	long_noncoding_rna			None;(source:Araport11)
AT4G13575.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G08970.2	protein_coding		J domain protein localized in ER lumen. Can compensate for the growth defect in jem1 scj1 mutant yeast. Also shows similarity to HSP40 proteins and is induced by heat stress. At high temperatures, mutant alleles are not transmitted through the pollen due to defects in pollen tube growth.	DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT4G00930.5	protein_coding		Encodes COP1-interacting protein CIP4.1.	COP1-interacting protein 4.1;(source:Araport11)
AT4G00930.4	protein_coding		Encodes COP1-interacting protein CIP4.1.	COP1-interacting protein 4.1;(source:Araport11)
AT4G03610.3	protein_coding			Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT1G07573.1	long_noncoding_rna			None;(source:Araport11)
AT5G03960.2	protein_coding		Member of IQ67 (CaM binding) domain containing family.	IQ-domain 12;(source:Araport11)
AT5G03960.3	protein_coding		Member of IQ67 (CaM binding) domain containing family.	IQ-domain 12;(source:Araport11)
AT4G00930.3	protein_coding		Encodes COP1-interacting protein CIP4.1.	COP1-interacting protein 4.1;(source:Araport11)
AT4G00930.2	protein_coding		Encodes COP1-interacting protein CIP4.1.	COP1-interacting protein 4.1;(source:Araport11)
AT5G35550.2	protein_coding		TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT3G29180.3	protein_coding			DUF1336 family protein (DUF1336);(source:Araport11)
AT5G07955.1	long_noncoding_rna			None;(source:Araport11)
AT4G31110.2	protein_coding			Wall-associated kinase family protein;(source:Araport11)
AT1G05997.1	small_nucleolar_rna			None;(source:Araport11)
AT1G52820.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G05215.1	long_noncoding_rna			None;(source:Araport11)
AT4G20735.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G45310.2	protein_coding			coiled-coil protein;(source:Araport11)
AT2G05245.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G07692;(source:Araport11)
AT3G27460.4	protein_coding			SGF29 tudor-like domain-containing protein;(source:Araport11)
AT2G25070.2	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT5G41763.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G32550.2	protein_coding			Cell differentiation, Rcd1-like protein;(source:Araport11)
AT2G32550.3	protein_coding			Cell differentiation, Rcd1-like protein;(source:Araport11)
AT2G45720.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT2G06530.2	protein_coding			SNF7 family protein;(source:Araport11)
AT1G48770.2	protein_coding			hypothetical protein (DUF1639);(source:Araport11)
AT1G48770.3	protein_coding			hypothetical protein (DUF1639);(source:Araport11)
AT1G27921.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G27920;(source:Araport11)
AT3G05155.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G07975.1	long_noncoding_rna			None;(source:Araport11)
AT3G21100.4	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G21100.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G42850.2	protein_coding			cytochrome P450, family 718;(source:Araport11)
AT1G12210.2	protein_coding		RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.	RPS5-like 1;(source:Araport11)
AT1G12210.3	protein_coding		RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.	RPS5-like 1;(source:Araport11)
AT4G24420.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT4G24420.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G11260.2	protein_coding		Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene Primes promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT4G31550.3	protein_coding		member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.	WRKY DNA-binding protein 11;(source:Araport11)
AT1G48590.4	protein_coding			Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT2G09760.1	long_noncoding_rna			None;(source:Araport11)
AT2G44140.5	protein_coding			Peptidase family C54 protein;(source:Araport11)
AT3G02245.1	protein_coding			transmembrane protein;(source:Araport11)
AT3G48187.1	protein_coding			Serine/Threonine-kinase ATM;(source:Araport11)
AT1G19910.2	protein_coding		vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2)	ATPase, F0/V0 complex, subunit C protein;(source:Araport11)
AT4G05375.1	long_noncoding_rna			None;(source:Araport11)
AT1G10240.2	protein_coding			FAR1-related sequence 11;(source:Araport11)
AT3G20000.2	protein_coding		Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.The mRNA is cell-to-cell mobile.	translocase of the outer mitochondrial membrane 40;(source:Araport11)
AT5G03790.2	protein_coding		Encodes a homeodomain leucine zipper class I (HD-Zip I) meristem identity regulator that acts together with LFY to induce CAL expression.  It binds to the CAL promoter proximal CAATNATTG element.  LMI1 acts primarily downstream of LFY in meristem identity regulation.  The interaction between LFY, LMI1 and CAL resembles a feed-forward loop transcriptional network motif.  The gene also had additional LFY-independent roles in leaf morphogenesis and bract formation.	homeobox 51;(source:Araport11)
AT3G44540.3	protein_coding		Encodes a member of the eight-member gene family encoding alcohol-forming fatty acyl-CoA reductases (FARs) identified in Arabidopsis thaliana.  Three of the FARs, FAR1 (At5g22500), FAR4 (At3g44540) and FAR5 (At3g44550), are shown to generate the fatty alcohols found in root, seed coat, and wound-induced leaf tissue.The mRNA is cell-to-cell mobile.	fatty acid reductase 4;(source:Araport11)
AT1G74530.4	protein_coding			transmembrane protein;(source:Araport11)
AT2G31960.4	protein_coding		encodes a protein similar to callose synthase	glucan synthase-like 3;(source:Araport11)
AT3G08460.1	long_noncoding_rna			None;(source:Araport11)
AT4G06795.1	long_noncoding_rna			None;(source:Araport11)
AT3G57680.2	protein_coding			Peptidase S41 family protein;(source:Araport11)
AT2G06065.1	long_noncoding_rna			None;(source:Araport11)
AT4G12720.6	protein_coding		Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.	MutT/nudix family protein;(source:Araport11)
AT4G12720.5	protein_coding		Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.	MutT/nudix family protein;(source:Araport11)
AT1G15490.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G22630.2	protein_coding			Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT4G20545.1	protein_coding			receptor-like kinase;(source:Araport11)
AT2G18720.3	protein_coding			Translation elongation factor EF1A/initiation factor IF2gamma family protein;(source:Araport11)
AT2G29735.1	protein_coding			major pollen allergen Ole e-like protein;(source:Araport11)
AT5G11470.2	protein_coding		SG1 is a Bromo-Adjacent Homology (BAH) domain containing protein involved in CHG methylation within genebodies. Loss of function results in pleiotrophic developmental effects that increase after 4 generations.	bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT3G44550.2	protein_coding		Encodes a member of the eight-member gene family encoding alcohol-forming fatty acyl-CoA reductases (FARs) identified in Arabidopsis thaliana.  Three of the FARs, FAR1 (At5g22500), FAR4 (At3g44540) and FAR5 (At3g44550), are shown to generate the fatty alcohols found in root, seed coat, and wound-induced leaf tissue.The mRNA is cell-to-cell mobile.	fatty acid reductase 5;(source:Araport11)
AT5G36880.5	protein_coding		Encodes a plastidic acetyl-coA synthetase. This enzyme plays a role in converting acetate to acetyl-coA in the plastids. It does not appear to be a major contributor to  fatty acid biosynthesis based on mutant phenotypes. The enzyme seems to act as a monomer and may play an important role  in preventing the toxic accumulation of fermentation products including acetaldehyde, acetate, and ethanol. It participates in  the pyruvate dehydrogenase bypass pathway	acetyl-CoA synthetase;(source:Araport11)
AT5G36880.4	protein_coding		Encodes a plastidic acetyl-coA synthetase. This enzyme plays a role in converting acetate to acetyl-coA in the plastids. It does not appear to be a major contributor to  fatty acid biosynthesis based on mutant phenotypes. The enzyme seems to act as a monomer and may play an important role  in preventing the toxic accumulation of fermentation products including acetaldehyde, acetate, and ethanol. It participates in  the pyruvate dehydrogenase bypass pathway	acetyl-CoA synthetase;(source:Araport11)
AT5G36880.6	protein_coding		Encodes a plastidic acetyl-coA synthetase. This enzyme plays a role in converting acetate to acetyl-coA in the plastids. It does not appear to be a major contributor to  fatty acid biosynthesis based on mutant phenotypes. The enzyme seems to act as a monomer and may play an important role  in preventing the toxic accumulation of fermentation products including acetaldehyde, acetate, and ethanol. It participates in  the pyruvate dehydrogenase bypass pathway	acetyl-CoA synthetase;(source:Araport11)
AT5G41763.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G36880.3	protein_coding		Encodes a plastidic acetyl-coA synthetase. This enzyme plays a role in converting acetate to acetyl-coA in the plastids. It does not appear to be a major contributor to  fatty acid biosynthesis based on mutant phenotypes. The enzyme seems to act as a monomer and may play an important role  in preventing the toxic accumulation of fermentation products including acetaldehyde, acetate, and ethanol. It participates in  the pyruvate dehydrogenase bypass pathway	acetyl-CoA synthetase;(source:Araport11)
AT5G00875.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G02760;(source:Araport11)
AT5G48657.3	protein_coding			defense protein-like protein;(source:Araport11)
AT2G03945.1	long_noncoding_rna			None;(source:Araport11)
AT5G48657.6	protein_coding			defense protein-like protein;(source:Araport11)
AT4G27480.3	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G08960.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G60630;(source:Araport11)
AT5G48657.5	protein_coding			defense protein-like protein;(source:Araport11)
AT4G26190.3	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT4G26190.2	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G42030.4	protein_coding			ABL interactor-like protein 4;(source:Araport11)
AT5G62460.2	protein_coding		RZFP is a zinc finger protein involved in mediating abiotic stress tolerance.	RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G62460.3	protein_coding		RZFP is a zinc finger protein involved in mediating abiotic stress tolerance.	RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G05605.1	miRNA_primary_transcript			microRNA ath-MIR855 precursor;(source:Araport11)
AT4G26190.4	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT4G11900.6	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT4G11900.7	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT4G11900.4	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT4G11900.5	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT4G11900.2	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT4G11900.3	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G04773.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G10120;(source:Araport11)
AT1G06630.9	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT3G03035.1	long_noncoding_rna			None;(source:Araport11)
AT5G08900.1	long_noncoding_rna			None;(source:Araport11)
AT5G07535.1	long_noncoding_rna			None;(source:Araport11)
AT4G09305.1	long_noncoding_rna			None;(source:Araport11)
AT2G45720.5	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT4G03625.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT3G54320.5	protein_coding		WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation. Splice form 3 is the major form expressed in seedlings.Mutations in the C terminal intrinsically disordered region increase the stability of WRI1 and lead to increased oil production.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT3G23050.3	protein_coding		Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. Pseudomonas syringae type III effector AvrRpt2 stimulates AXR2 protein turnover.	indole-3-acetic acid 7;(source:Araport11)
AT1G06827.1	long_noncoding_rna			None;(source:Araport11)
AT1G62690.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G15000.7	protein_coding			caspase-6 protein;(source:Araport11)
AT2G15000.6	protein_coding			caspase-6 protein;(source:Araport11)
AT4G10800.2	protein_coding			BTB/POZ domain protein;(source:Araport11)
AT1G09653.1	long_noncoding_rna			None;(source:Araport11)
AT2G31370.7	protein_coding			Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT2G38370.2	protein_coding			weak chloroplast movement under blue light protein (DUF827);(source:Araport11)
AT3G06050.2	protein_coding		Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions.	peroxiredoxin IIF;(source:Araport11)
AT4G09355.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G46050.2	protein_coding		Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.	peptide transporter 3;(source:Araport11)
AT1G35220.5	protein_coding			FAM91 carboxy-terminus protein;(source:Araport11)
AT5G24740.3	protein_coding		Encodes a vacuolar sorting protein that interacts with the plant-specific GRAS family transcription factor SHORT-ROOT and acts in a pathway that controls root growth and radial patterning. It provides a connections between gibberellic acid, SHR and PLT signaling in the root.	vacuolar protein sorting-associated protein, putative (DUF1162);(source:Araport11)
AT5G24740.5	protein_coding		Encodes a vacuolar sorting protein that interacts with the plant-specific GRAS family transcription factor SHORT-ROOT and acts in a pathway that controls root growth and radial patterning. It provides a connections between gibberellic acid, SHR and PLT signaling in the root.	vacuolar protein sorting-associated protein, putative (DUF1162);(source:Araport11)
AT5G24740.4	protein_coding		Encodes a vacuolar sorting protein that interacts with the plant-specific GRAS family transcription factor SHORT-ROOT and acts in a pathway that controls root growth and radial patterning. It provides a connections between gibberellic acid, SHR and PLT signaling in the root.	vacuolar protein sorting-associated protein, putative (DUF1162);(source:Araport11)
AT5G24740.6	protein_coding		Encodes a vacuolar sorting protein that interacts with the plant-specific GRAS family transcription factor SHORT-ROOT and acts in a pathway that controls root growth and radial patterning. It provides a connections between gibberellic acid, SHR and PLT signaling in the root.	vacuolar protein sorting-associated protein, putative (DUF1162);(source:Araport11)
AT1G80770.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G15730.2	protein_coding			CW-type Zinc Finger;(source:Araport11)
AT1G80770.6	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G09340.1	miRNA_primary_transcript			microRNA ath-MIR156j precursor;(source:Araport11)
AT1G80770.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G80770.5	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G21800.3	protein_coding		Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.	essential meiotic endonuclease 1A;(source:Araport11)
AT5G44530.3	protein_coding			Subtilase family protein;(source:Araport11)
AT2G35060.3	protein_coding		potassium transporter	K+ uptake permease 11;(source:Araport11)
AT5G06975.1	long_noncoding_rna			None;(source:Araport11)
AT2G08310.1	long_noncoding_rna			None;(source:Araport11)
AT4G22510.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G17717.1	protein_coding			S-adenosylmethionine decarboxylase proenzyme;(source:Araport11)
AT1G10060.7	protein_coding		encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	branched-chain amino acid transaminase 1;(source:Araport11)
AT1G22990.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G35220.6	protein_coding			FAM91 carboxy-terminus protein;(source:Araport11)
AT5G26910.4	protein_coding		Encodes a member of the TRM superfamily, that plays a role in preprophase band formation during plant cell division and controls the robustness of the orientation of that cell division.	GPI-anchored adhesin-like protein;(source:Araport11)
AT4G18290.2	protein_coding		Encodes KAT2, a member of the Shaker family potassium ion (K+) channel.  Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type. The Shaker family K+ ion channels include five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).	potassium channel KAT1-like protein;(source:Araport11)
AT4G16940.6	protein_coding		Redundant function together with SIKIC2 and 3 in SNC1-mediated autoimmunity. Protein levels controlled by MUSE1 and MUSE2.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16940.5	protein_coding		Redundant function together with SIKIC2 and 3 in SNC1-mediated autoimmunity. Protein levels controlled by MUSE1 and MUSE2.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16940.4	protein_coding		Redundant function together with SIKIC2 and 3 in SNC1-mediated autoimmunity. Protein levels controlled by MUSE1 and MUSE2.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16940.3	protein_coding		Redundant function together with SIKIC2 and 3 in SNC1-mediated autoimmunity. Protein levels controlled by MUSE1 and MUSE2.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G16940.2	protein_coding		Redundant function together with SIKIC2 and 3 in SNC1-mediated autoimmunity. Protein levels controlled by MUSE1 and MUSE2.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G20020.3	protein_coding			protein arginine methyltransferase 6;(source:Araport11)
AT1G79790.4	protein_coding		Encodes a chloroplast-localized FMN hydrolase that whose phosphatase activity is FMN-specific.	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G71920.6	protein_coding		Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.	HISTIDINE BIOSYNTHESIS 6B;(source:Araport11)
AT1G71920.5	protein_coding		Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.	HISTIDINE BIOSYNTHESIS 6B;(source:Araport11)
AT1G03400.2	protein_coding		A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT5G22510.2	protein_coding		Encodes a chloroplast-targeted alkaline/neutral invertase that is implicated in the development of the photosynthetic apparatus and nitrogen assimilation in seedlings to control the sucrose to hexose ratio.	alkaline/neutral invertase;(source:Araport11)
AT2G07385.1	long_noncoding_rna			None;(source:Araport11)
AT1G79790.3	protein_coding		Encodes a chloroplast-localized FMN hydrolase that whose phosphatase activity is FMN-specific.	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT3G49890.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G05770.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G23470.4	protein_coding			PLAC8 family protein;(source:Araport11)
AT2G09450.1	long_noncoding_rna			None;(source:Araport11)
AT5G51410.4	protein_coding			LUC7 N terminus domain-containing protein;(source:Araport11)
AT5G01045.1	long_noncoding_rna			None;(source:Araport11)
AT4G17483.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G17483.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G76465.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G17483.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G56070.3	protein_coding		encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive.	Ribosomal protein S5/Elongation factor G/III/V family protein;(source:Araport11)
AT5G06075.1	long_noncoding_rna			None;(source:Araport11)
AT4G18840.2	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT4G18840.3	protein_coding			Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
AT1G09783.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G78130;(source:Araport11)
AT4G15233.4	protein_coding			ABC-2 and Plant PDR ABC-type transporter family protein;(source:Araport11)
AT2G22720.6	protein_coding			SPT2 chromatin protein;(source:Araport11)
AT1G48310.2	protein_coding			chromatin remodeling factor18;(source:Araport11)
AT1G72760.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G22720.5	protein_coding			SPT2 chromatin protein;(source:Araport11)
AT3G14790.2	protein_coding			rhamnose biosynthesis 3;(source:Araport11)
AT1G72700.2	protein_coding			ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT5G60210.6	protein_coding		Encodes RIP5 (ROP interactive partner 5), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants).	ROP interactive partner 5;(source:Araport11)
AT5G60210.5	protein_coding		Encodes RIP5 (ROP interactive partner 5), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants).	ROP interactive partner 5;(source:Araport11)
AT4G33990.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G60210.3	protein_coding		Encodes RIP5 (ROP interactive partner 5), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants).	ROP interactive partner 5;(source:Araport11)
AT3G16030.5	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT3G16030.6	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT1G23340.3	protein_coding			carboxyl-terminal proteinase, putative (DUF239);(source:Araport11)
AT3G16030.8	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT1G45545.2	protein_coding			WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827);(source:Araport11)
AT5G07615.1	long_noncoding_rna			None;(source:Araport11)
AT4G06780.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G18395;(source:Araport11)
AT4G30975.3	other_rna			None;(source:Araport11)
AT4G24180.6	protein_coding		Root-specific expression activated in response to rhizobacteria and ACC. Role in induced systemic resistance.	THAUMATIN-LIKE PROTEIN 1;(source:Araport11)
AT1G08827.1	long_noncoding_rna			None;(source:Araport11)
AT1G18830.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
ATMG09450.1	pre_trna			pre-tRNA tRNA-Ser (anticodon: TGA);(source:Araport11, TAIR10)
AT1G18830.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G02580.2	protein_coding		Encodes the imprinted gene MEA that belongs to Polycomb Repressive Complex 2 (PRC2) and has a SET domain for methyltransferase activity and is involved in the stable transcriptional silencing of target genes.  It negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality.  MEA is imprinted in the endosperm.  The maternal allele is expressed and the paternal allele is silent.  MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is  involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also  dynamically regulated during seed development. In the ovule, the MEA transcripts  are accumulated at their highest level before fertilization  and gradually decrease after fertilization	SET domain-containing protein;(source:Araport11)
AT3G05455.1	long_noncoding_rna			None;(source:Araport11)
AT5G48090.3	protein_coding			EDM2-like protein1;(source:Araport11)
AT1G54730.5	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT4G09925.1	miRNA_primary_transcript			microRNA ath-MIR5658 precursor;(source:Araport11)
AT1G05527.1	long_noncoding_rna			None;(source:Araport11)
AT3G09395.1	long_noncoding_rna			None;(source:Araport11)
AT4G07110.1	long_noncoding_rna			None;(source:Araport11)
AT1G09877.1	small_nucleolar_rna			None;(source:Araport11)
AT2G09005.1	long_noncoding_rna			None;(source:Araport11)
AT3G01615.1	antisense_rna			Natural antisense transcript overlaps with AT3G05180;(source:Araport11)
AT1G35220.2	protein_coding			FAM91 carboxy-terminus protein;(source:Araport11)
AT5G35732.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G05475.1	long_noncoding_rna			None;(source:Araport11)
AT4G06995.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G21310;(source:Araport11)
AT1G63370.2	protein_coding			Flavin-binding monooxygenase family protein;(source:Araport11)
AT3G09655.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G61380;(source:Araport11)
AT5G43710.2	protein_coding			Glycosyl hydrolase family 47 protein;(source:Araport11)
AT4G16955.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G08410.2	protein_coding			ferredoxin/thioredoxin reductase subunit A (variable subunit) 2;(source:Araport11)
AT2G01270.3	protein_coding		Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.	quiescin-sulfhydryl oxidase 2;(source:Araport11)
AT2G01270.2	protein_coding		Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.	quiescin-sulfhydryl oxidase 2;(source:Araport11)
AT1G61430.3	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT2G16390.2	protein_coding		Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins.  Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation.  Cooperates with PolIVb to facilitate RNA-directed de novo methylation and silencing of homologous DNA.  Endogenous targets include intergenic regions near retrotransposon LTRs or short RNA encoding sequences that might epigenetically regulate adjacent genes.  May be used to establish a basal yet reversible level of silencing in euchromatin.	SNF2 domain-containing protein / helicase domain-containing protein;(source:Araport11)
AT1G80040.4	protein_coding			ubiquitin system component Cue;(source:Araport11)
AT3G01380.2	protein_coding			sulfatase and phosphatidylinositolglycan class N domain-containing protein;(source:Araport11)
AT3G10440.2	protein_coding		Encodes a protein that protects meiotic centromere cohesion.	Shugoshin C terminus;(source:Araport11)
AT1G29730.3	protein_coding			Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT3G19860.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G14720.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G45110.2	protein_coding		Encodes NPR3, a paralog of NPR1.  Involved in negative regulation of defense responses against bacterial and oomycete pathogens.  npr3 mutants has elevated level of PR1 expression.  Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays. NPR3 and NPR4 are receptors for the immune signal salicylic acid.The mRNA is cell-to-cell mobile.	NPR1-like protein 3;(source:Araport11)
AT1G29730.4	protein_coding			Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT2G19960.2	protein_coding			hAT family dimerization domain-containing protein;(source:Araport11)
AT4G26830.2	protein_coding			O-Glycosyl hydrolases family 17 protein;(source:Araport11)
AT3G00690.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G10510.7	protein_coding		Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. It is also required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions. Intronic sequences are required for its expression in flowers.Acts redundantly with PLT5 and 7 in lateral root pattern formation.	AINTEGUMENTA-like 6;(source:Araport11)
AT3G04355.1	antisense_rna			Natural antisense transcript overlaps with AT3G22950;(source:Araport11)
AT5G59430.5	protein_coding		Encodes a telomeric repeat binding protein with a DNA binding domain at its C terminus. The DNA binding domain has a preference for GGTTTAG sequences and at least five of these repeats are required for recognition by a nearly full-length TRP1 protein.	telomeric repeat binding protein 1;(source:Araport11)
AT1G06633.1	long_noncoding_rna			None;(source:Araport11)
AT1G14560.2	protein_coding		Encodes a mitochondrial CoA transporter.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G14560.3	protein_coding		Encodes a mitochondrial CoA transporter.	Mitochondrial substrate carrier family protein;(source:Araport11)
AT2G20510.4	protein_coding		One of two loci encoding the TIM44 subunit of the mitochondrial inner membrane translocase complex. TIM44 subunit is the part of the complex that hydrolyzes ATP to provide energy for protein translocation to the inner membrane.	translocase inner membrane subunit 44-1;(source:Araport11)
AT1G09697.1	long_noncoding_rna			None;(source:Araport11)
AT2G20510.2	protein_coding		One of two loci encoding the TIM44 subunit of the mitochondrial inner membrane translocase complex. TIM44 subunit is the part of the complex that hydrolyzes ATP to provide energy for protein translocation to the inner membrane.	translocase inner membrane subunit 44-1;(source:Araport11)
AT4G09810.3	protein_coding			Nucleotide-sugar transporter family protein;(source:Araport11)
AT4G09810.2	protein_coding			Nucleotide-sugar transporter family protein;(source:Araport11)
AT1G47510.3	protein_coding		Encodes a phosphatidylinositol  polyphosphate 5-phosphatase. It can dephosphorylate PI(4,5)P2, PI(3,5)P2, and PI(3,4,5)P3, but, it is not active against PI(5)P or the water soluble inositol(1,4,5)P3 or inositol(1,3,4,5)P4. The transcript levels for this gene rise in response to auxin, ABA, and JA.	inositol polyphosphate 5-phosphatase 11;(source:Araport11)
AT1G10490.2	protein_coding			GNAT acetyltransferase (DUF699);(source:Araport11)
AT2G06465.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G15690;(source:Araport11)
AT5G01110.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G47510.4	protein_coding		Encodes a phosphatidylinositol  polyphosphate 5-phosphatase. It can dephosphorylate PI(4,5)P2, PI(3,5)P2, and PI(3,4,5)P3, but, it is not active against PI(5)P or the water soluble inositol(1,4,5)P3 or inositol(1,3,4,5)P4. The transcript levels for this gene rise in response to auxin, ABA, and JA.	inositol polyphosphate 5-phosphatase 11;(source:Araport11)
AT1G18160.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G05537.1	long_noncoding_rna			None;(source:Araport11)
AT4G08155.1	small_nucleolar_rna			None;(source:Araport11)
AT3G09515.1	miRNA_primary_transcript			microRNA ath-MIR1888b precursor;(source:Araport11)
AT2G27930.2	protein_coding			PLATZ transcription factor family protein;(source:Araport11)
AT4G31408.3	other_rna			None;(source:Araport11)
AT1G22880.3	protein_coding			cellulase 5;(source:Araport11)
AT5G36870.4	protein_coding		encodes a gene similar to callose synthase	glucan synthase-like 9;(source:Araport11)
AT5G36870.5	protein_coding		encodes a gene similar to callose synthase	glucan synthase-like 9;(source:Araport11)
AT4G23160.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RECEPTOR-like kinase;(source:Araport11)
AT5G36870.2	protein_coding		encodes a gene similar to callose synthase	glucan synthase-like 9;(source:Araport11)
AT5G36870.3	protein_coding		encodes a gene similar to callose synthase	glucan synthase-like 9;(source:Araport11)
AT3G01435.3	protein_coding			Expressed protein;(source:Araport11)
AT4G23160.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RECEPTOR-like kinase;(source:Araport11)
AT4G06285.1	long_noncoding_rna			None;(source:Araport11)
AT4G11390.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G41050.5	protein_coding			PQ-loop repeat family protein / transmembrane family protein;(source:Araport11)
AT5G03605.1	long_noncoding_rna			None;(source:Araport11)
AT5G47690.4	protein_coding		One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.	binding protein;(source:Araport11)
AT3G13800.4	protein_coding			Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT2G09105.1	long_noncoding_rna			None;(source:Araport11)
AT2G04815.1	long_noncoding_rna			None;(source:Araport11)
AT1G65425.1	protein_coding			F-box/kelch-repeat protein;(source:Araport11)
AT5G00980.1	long_noncoding_rna			None;(source:Araport11)
AT1G09000.2	protein_coding		NPK1-related protein kinase 1S	NPK1-related protein kinase 1;(source:Araport11)
AT3G30720.2	protein_coding		QQS is an orphan gene that arose recently in the Arabidopsis thaliana lineage. It was first identified in a screen for genes with altered expression pattern in SS3 mutants which make an abundance of starch. Overexpression of QQS in Arabidopsis increases protein content and decreases total starch content. Thus it appears to function to modulate carbon/nitrogen allocation in Arabidopsis. Over expression of QQS in soybean, rice and maize also results in an increase in protein and decrease in starch levels suggesting that QQS affects similar pathways in a wide range of plants. QQS interacts with NF-YC4 in Arabidopsis and NF-YC4 homologs in rice, soybean and maize. In Arabidopsis QQS is localized the the cytoplasm and when complexed with NF-YC4 , it localizes to the nucleus.	qua-quine starch;(source:Araport11)
AT3G30720.3	protein_coding		QQS is an orphan gene that arose recently in the Arabidopsis thaliana lineage. It was first identified in a screen for genes with altered expression pattern in SS3 mutants which make an abundance of starch. Overexpression of QQS in Arabidopsis increases protein content and decreases total starch content. Thus it appears to function to modulate carbon/nitrogen allocation in Arabidopsis. Over expression of QQS in soybean, rice and maize also results in an increase in protein and decrease in starch levels suggesting that QQS affects similar pathways in a wide range of plants. QQS interacts with NF-YC4 in Arabidopsis and NF-YC4 homologs in rice, soybean and maize. In Arabidopsis QQS is localized the the cytoplasm and when complexed with NF-YC4 , it localizes to the nucleus.	qua-quine starch;(source:Araport11)
AT1G08337.1	miRNA_primary_transcript			microRNA ath-MIR5022 precursor;(source:Araport11)
AT4G03110.3	protein_coding		Encodes a putative RNA-binding protein that is located in the cytoplasm and is involved in the hypersensitive response and positively regulates salicylic acid-mediated immunity.	RNA-binding protein-defense related 1;(source:Araport11)
AT5G46380.2	protein_coding			Serine/Threonine-kinase, putative (DUF1296);(source:Araport11)
AT5G08045.1	long_noncoding_rna			None;(source:Araport11)
AT3G26720.5	protein_coding			Glycosyl hydrolase family 38 protein;(source:Araport11)
AT5G42490.2	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT3G32420.1	protein_coding			actin-binding FH2 (formin-like) protein;(source:Araport11)
AT5G04460.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G36922.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G62960.2	protein_coding			UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein;(source:Araport11)
AT4G08335.1	miRNA_primary_transcript			microRNA ath-MIR5634 precursor;(source:Araport11)
AT5G28345.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G27270.4	protein_coding			Quinone reductase family protein;(source:Araport11)
AT4G16950.5	protein_coding		Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G22475.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G44030.2	protein_coding		Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.The mRNA is cell-to-cell mobile.	cellulose synthase A4;(source:Araport11)
AT4G16950.6	protein_coding		Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.	Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G22220.3	protein_coding			hAT transposon superfamily;(source:Araport11)
AT3G60070.5	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G60070.4	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G60070.6	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT4G07805.1	long_noncoding_rna			None;(source:Araport11)
AT3G60070.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G60070.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT4G22475.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G04145.1	miRNA_primary_transcript			microRNA ath-MIR5641 precursor;(source:Araport11)
AT5G64813.3	protein_coding		The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis.The mRNA is cell-to-cell mobile.	Ras-related small GTP-binding family protein;(source:Araport11)
AT1G32127.1	protein_coding			plant viral-response family protein;(source:Araport11)
AT3G51330.2	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT1G32127.2	protein_coding			plant viral-response family protein;(source:Araport11)
AT4G02935.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G67385.5	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G67385.4	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G27040.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G67385.3	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G67385.2	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G61680.3	protein_coding		PLIP1 encodes a plastid localized phospholipase A1 involved in seed oil biosynthesis.	alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G05925.1	long_noncoding_rna			None;(source:Araport11)
AT4G06390.1	long_noncoding_rna			None;(source:Araport11)
AT2G45480.3	protein_coding		Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development.	growth-regulating factor 9;(source:Araport11)
AT1G07170.5	protein_coding		Similar to human splicing factor 3b, 14 kda subunit, SF3b14b.	PHF5-like protein;(source:Araport11)
AT4G02955.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G02955.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G07170.6	protein_coding		Similar to human splicing factor 3b, 14 kda subunit, SF3b14b.	PHF5-like protein;(source:Araport11)
AT1G05693.1	long_noncoding_rna			None;(source:Araport11)
AT2G24610.2	protein_coding		member of Cyclic nucleotide gated channel family	cyclic nucleotide-gated channel 14;(source:Araport11)
AT1G23420.2	protein_coding		Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.	Plant-specific transcription factor YABBY family protein;(source:Araport11)
AT1G07247.1	long_noncoding_rna			None;(source:Araport11)
AT1G05277.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G16890;(source:Araport11)
AT5G07770.4	protein_coding			Actin-binding FH2 protein;(source:Araport11)
AT5G07770.3	protein_coding			Actin-binding FH2 protein;(source:Araport11)
AT2G04690.4	protein_coding			Pyridoxamine 5-phosphate oxidase family protein;(source:Araport11)
AT2G04690.5	protein_coding			Pyridoxamine 5-phosphate oxidase family protein;(source:Araport11)
AT5G53590.uORF1	uORF			Derives_from AT5G53590;(source:Araport11)
AT4G06040.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, flower, pollen;(source:Araport11)
AT2G21450.3	protein_coding			chromatin remodeling 34;(source:Araport11)
AT2G24170.2	protein_coding			Endomembrane protein 70 protein family;(source:Araport11)
AT2G43280.2	protein_coding		Encodes one of four FRS (FAR1-RELATED SEQUENCE) factor-like genes in Arabidopsis.  FRS factors are characterized by having an N-terminal C2H2-type chelating motif of the WRKY- Glial Cell Missing1 family, a central core transposase domain of Mutator-like element transposases, and a C-terminal SWIM domain. The four FRF-like genes in  Arabidopsis share only the N-terminal motif with FRS proteins.	Far-red impaired responsive (FAR1) family protein;(source:Araport11)
AT2G05975.1	long_noncoding_rna			None;(source:Araport11)
AT2G22540.3	protein_coding		Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway.  SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT4G03465.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03465.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03465.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G41820.2	protein_coding			RAB geranylgeranyl transferase alpha subunit 2;(source:Araport11)
AT5G07760.2	protein_coding			formin homology 2 domain-containing protein / FH2 domain-containing protein;(source:Araport11)
AT4G03465.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G48260.4	protein_coding		Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17).	CBL-interacting protein kinase 17;(source:Araport11)
AT1G48260.5	protein_coding		Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17).	CBL-interacting protein kinase 17;(source:Araport11)
AT5G47470.2	protein_coding		nodulin MtN21-like transporter family protein	Nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G47470.3	protein_coding		nodulin MtN21-like transporter family protein	Nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G08843.1	long_noncoding_rna			None;(source:Araport11)
AT1G48260.3	protein_coding		Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17).	CBL-interacting protein kinase 17;(source:Araport11)
AT3G26140.3	protein_coding			Cellulase (glycosyl hydrolase family 5) protein;(source:Araport11)
AT4G33810.2	protein_coding			Glycosyl hydrolase superfamily protein;(source:Araport11)
AT4G33810.3	protein_coding			Glycosyl hydrolase superfamily protein;(source:Araport11)
AT4G33810.4	protein_coding			Glycosyl hydrolase superfamily protein;(source:Araport11)
AT4G33810.5	protein_coding			Glycosyl hydrolase superfamily protein;(source:Araport11)
AT2G08830.1	long_noncoding_rna			None;(source:Araport11)
AT2G00900.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G10030.3	protein_coding		Encodes a member of basic leucine zipper transcription gene family.  Nomenclature according to Xiang, et al. (1997).	TGACG motif-binding factor 4;(source:Araport11)
AT5G10030.4	protein_coding		Encodes a member of basic leucine zipper transcription gene family.  Nomenclature according to Xiang, et al. (1997).	TGACG motif-binding factor 4;(source:Araport11)
AT5G10030.5	protein_coding		Encodes a member of basic leucine zipper transcription gene family.  Nomenclature according to Xiang, et al. (1997).	TGACG motif-binding factor 4;(source:Araport11)
AT1G75310.2	protein_coding			auxin-like 1 protein;(source:Araport11)
AT1G56550.2	protein_coding		Encodes a rhamnogalacturonan II specific xylosyltransferase.	RhamnoGalacturonan speci%26#64257;(source:Araport11)
AT3G44960.4	protein_coding			shugoshin;(source:Araport11)
AT3G13910.2	protein_coding			hypothetical protein (DUF3511);(source:Araport11)
AT2G04455.1	small_nuclear_rna			U2;(source:Araport11)
AT3G03770.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT3G01605.1	antisense_rna			Natural antisense transcript overlaps with AT3G05090;(source:Araport11)
AT5G53370.2	protein_coding			pectin methylesterase PCR fragment F;(source:Araport11)
AT1G07833.1	long_noncoding_rna			None;(source:Araport11)
AT5G06180.4	protein_coding			fission ELM1-like protein (DUF1022);(source:Araport11)
AT5G06770.6	protein_coding		KHZ2  is a CCCH zinc-finger and KH domain protein belonging to the VII subfamily. It is expressed throughout the plant. Highly similar to KHZ1.Double mutants with khz1 are  late flowering. Overexpression leads to increased rates of leaf senescence.	KH domain-containing protein / zinc finger (CCCH type) family protein;(source:Araport11)
AT5G07455.1	long_noncoding_rna			None;(source:Araport11)
AT1G13050.3	protein_coding			proline-rich receptor-like kinase;(source:Araport11)
AT5G48657.4	protein_coding			defense protein-like protein;(source:Araport11)
AT1G05267.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G16820;(source:Araport11)
AT1G06913.1	long_noncoding_rna			None;(source:Araport11)
AT2G08390.1	small_nucleolar_rna			None;(source:Araport11)
AT4G15215.4	protein_coding			pleiotropic drug resistance 13;(source:Araport11)
AT3G02385.1	small_nucleolar_rna			None;(source:Araport11)
AT2G09045.1	antisense_rna			Natural antisense transcript overlaps with AT2G39430;(source:Araport11)
AT2G01379.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G06640.2	protein_coding			Proline-rich extensin-like family protein;(source:Araport11)
AT5G38820.2	protein_coding		Encodes a putative amino acid transporter.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT5G06770.3	protein_coding		KHZ2  is a CCCH zinc-finger and KH domain protein belonging to the VII subfamily. It is expressed throughout the plant. Highly similar to KHZ1.Double mutants with khz1 are  late flowering. Overexpression leads to increased rates of leaf senescence.	KH domain-containing protein / zinc finger (CCCH type) family protein;(source:Araport11)
AT1G75180.4	protein_coding			Erythronate-4-phosphate dehydrogenase family protein;(source:Araport11)
AT5G06620.2	protein_coding			SET domain protein 38;(source:Araport11)
AT5G66550.2	protein_coding			Maf-like protein;(source:Araport11)
AT3G24750.2	protein_coding		Encodes a member of the LAZY gene family that is expressed in the hypocotyl and the root	hypothetical protein;(source:Araport11)
AT3G24750.3	protein_coding		Encodes a member of the LAZY gene family that is expressed in the hypocotyl and the root	hypothetical protein;(source:Araport11)
AT5G59305.2	protein_coding			CLAVATA 3/ESR (CLE)-like protein;(source:Araport11)
AT1G05843.1	long_noncoding_rna			None;(source:Araport11)
AT5G42030.3	protein_coding			ABL interactor-like protein 4;(source:Araport11)
AT5G59390.4	protein_coding			XH/XS domain-containing protein;(source:Araport11)
AT1G49040.4	protein_coding		Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells.  The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile.	stomatal cytokinesis defective / SCD1 protein (SCD1);(source:Araport11)
AT1G34630.4	protein_coding			transmembrane protein;(source:Araport11)
AT1G11170.4	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT5G14660.3	protein_coding		Encodes a peptide deformylase PDF1B.  The crystal structure has been determined at a resolution of 0.24 nm (Biochem J, 2008, vol 413:417-427).	peptide deformylase 1B;(source:Araport11)
AT5G42030.2	protein_coding			ABL interactor-like protein 4;(source:Araport11)
AT1G57600.2	protein_coding			MBOAT (membrane bound O-acyl transferase) family protein;(source:Araport11)
AT4G20350.11	protein_coding			oxidoreductase;(source:Araport11)
AT5G00460.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G26190.5	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G05633.1	long_noncoding_rna			None;(source:Araport11)
AT5G24155.2	protein_coding			FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT3G03525.1	long_noncoding_rna			None;(source:Araport11)
AT1G27880.2	protein_coding			DEAD/DEAH box RNA helicase family protein;(source:Araport11)
AT4G11900.9	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT3G00670.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G57960.2	protein_coding			GTP-binding protein, HflX;(source:Araport11)
AT5G60150.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G05535.1	long_noncoding_rna			None;(source:Araport11)
AT4G09155.1	long_noncoding_rna			None;(source:Araport11)
AT5G08585.1	long_noncoding_rna			None;(source:Araport11)
AT5G66550.4	protein_coding			Maf-like protein;(source:Araport11)
AT4G09705.1	long_noncoding_rna			None;(source:Araport11)
AT1G59660.2	protein_coding		Encodes a protein with similarity to mammalian nucleoporin Nup98.Its expression is upregulated in mutants that are NUP deficient. Nucleoportin which redundantly inhibits flowering together with Nup98a through multiple pathways including clock, photoperiod, and age pathways. Gates flowering in a CONSTANS (CO)-independent mode and bypasses the CO checkpoint in photoperiodic signaling and integrated signals from multiple pathways to directly target FLOWERING LOCUS T (FT) for flowering control.	Nucleoporin autopeptidase;(source:Araport11)
AT1G59660.3	protein_coding		Encodes a protein with similarity to mammalian nucleoporin Nup98.Its expression is upregulated in mutants that are NUP deficient. Nucleoportin which redundantly inhibits flowering together with Nup98a through multiple pathways including clock, photoperiod, and age pathways. Gates flowering in a CONSTANS (CO)-independent mode and bypasses the CO checkpoint in photoperiodic signaling and integrated signals from multiple pathways to directly target FLOWERING LOCUS T (FT) for flowering control.	Nucleoporin autopeptidase;(source:Araport11)
AT1G07745.4	protein_coding		Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.	DNA repair RAD51-like protein;(source:Araport11)
AT3G06155.1	long_noncoding_rna			None;(source:Araport11)
AT5G60130.4	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G60130.5	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT2G09835.1	long_noncoding_rna			None;(source:Araport11)
AT3G15354.4	protein_coding		Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain.  SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants.	SPA1-related 3;(source:Araport11)
AT1G04203.1	long_noncoding_rna			None;(source:Araport11)
AT1G64960.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT3G12400.3	protein_coding		Mutants of this gene were initially identified because of the trichome morphogenesis phenotype. Those trichomes have multiple nuclei, a defect that turns out not to be restricted to the trichomes but also in all endoreduplicating cell types. This gene encodes a ubiquitin-binding protein with sequence similarities with yeast proteins that are components of the ESCRTI-III complexes. The Arabidopsis protein is found associated with the endosome.	Ubiquitin-conjugating enzyme/RWD-like protein;(source:Araport11)
AT3G12400.2	protein_coding		Mutants of this gene were initially identified because of the trichome morphogenesis phenotype. Those trichomes have multiple nuclei, a defect that turns out not to be restricted to the trichomes but also in all endoreduplicating cell types. This gene encodes a ubiquitin-binding protein with sequence similarities with yeast proteins that are components of the ESCRTI-III complexes. The Arabidopsis protein is found associated with the endosome.	Ubiquitin-conjugating enzyme/RWD-like protein;(source:Araport11)
AT3G05035.1	protein_coding			exportin-4 protein;(source:Araport11)
AT3G05035.3	protein_coding			exportin-4 protein;(source:Araport11)
AT1G31650.2	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	RHO guanyl-nucleotide exchange factor 14;(source:Araport11)
AT1G57610.4	protein_coding			calcium uniporter (DUF607);(source:Araport11)
AT1G29950.uORF2-2	uORF			Derives_from AT1G29950;(source:Araport11)
AT3G09350.4	protein_coding		Encodes one of the Arabidopsis orthologs of the human Hsp70-binding protein 1 (HspBP-1) and yeast Fes1p: Fes1A (AT3G09350), Fes1B (AT3G53800), Fes1C (AT5G02150). Fes1A is cytosolic and associates with cytosolic Hsp70.  Mutants showed increased heat-sensitive phenotype suggestion the involvement of Fes1A in acquired thermotolerance.  Does not have nucleotide exchange factor activity in vitro.	Fes1A;(source:Araport11)
AT2G14520.2	protein_coding			CBS domain protein (DUF21);(source:Araport11)
AT2G05725.1	long_noncoding_rna			None;(source:Araport11)
AT4G23770.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G07887.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G53480;(source:Araport11)
AT5G48520.2	protein_coding		Encodes AUGMIN subunit3 (AUG3), a homolog of animal dim gamma-tubulin 3/human augmin-like complex, subunit 3. Plays a critical role in microtubule organization during plant cell division.	HAUS augmin-like complex subunit;(source:Araport11)
AT3G59950.4	protein_coding			Peptidase family C54 protein;(source:Araport11)
AT3G59950.5	protein_coding			Peptidase family C54 protein;(source:Araport11)
AT1G11500.3	protein_coding		DUF1218 family member.	transmembrane protein, putative (DUF1218);(source:Araport11)
AT1G03395.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G11911.2	protein_coding			STAY-GREEN-like protein;(source:Araport11)
AT3G58830.3	protein_coding		Encodes a phosphatidylglycerophosphate (PGP) phosphatase that localizes to chloroplasts in above ground plant parts and mitochondria in root tips and root hairs and is involved in the synthesis of plastidial Phosphatidylglycerol (PG). This enzyme is responsible for the second step of PG synthesis. Mutants show reduced root growth.	haloacid dehalogenase (HAD) superfamily protein;(source:Araport11)
AT5G22700.3	protein_coding			LOW protein: F-box/FBD/LRR-like protein;(source:Araport11)
AT5G22700.2	protein_coding			LOW protein: F-box/FBD/LRR-like protein;(source:Araport11)
AT3G04445.2	pseudogene			pseudogene of polyribonucleotide nucleotidyltransferase;(source:Araport11)
AT5G22700.5	protein_coding			LOW protein: F-box/FBD/LRR-like protein;(source:Araport11)
AT5G22700.4	protein_coding			LOW protein: F-box/FBD/LRR-like protein;(source:Araport11)
AT1G80950.2	protein_coding		Encodes an acyl-CoA: lysophosphatidylethanolamine acyltransferase with 16:0-CoA being the best acyl donor. Mutations adversely affect the growth of plants and result in decreased lipid content in roots and seeds.	Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
AT2G08850.1	long_noncoding_rna			None;(source:Araport11)
AT2G07633.1	protein_coding			NADH-plastoquinone oxidoreductase subunit;(source:Araport11)
AT1G80380.5	protein_coding		encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G09267.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G71865;(source:Araport11)
AT3G23800.2	protein_coding			selenium-binding protein 3;(source:Araport11)
AT4G16765.6	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G19660.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT2G36270.3	protein_coding		Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages. Responsible for reducing cadmium uptake, mediated by interaction with MYB49 .	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT3G50570.2	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT5G20130.2	protein_coding			sulfate adenylyltransferase subunit;(source:Araport11)
AT5G50915.4	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G36270.2	protein_coding		Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages. Responsible for reducing cadmium uptake, mediated by interaction with MYB49 .	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT5G05800.5	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT4G06800.1	long_noncoding_rna			None;(source:Araport11)
AT2G32870.2	protein_coding			TRAF-like family protein;(source:Araport11)
AT1G80970.3	protein_coding			XH domain-containing protein;(source:Araport11)
AT1G80970.4	protein_coding			XH domain-containing protein;(source:Araport11)
AT1G32210.2	protein_coding		Encodes protein involved in suppression of apoptosis. Complements a mammalian apoptosis suppressor mutation.	Defender against death (DAD family) protein;(source:Araport11)
AT4G11460.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 30;(source:Araport11)
AT5G45500.6	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT1G03080.2	protein_coding			kinase interacting (KIP1-like) family protein;(source:Araport11)
AT5G50950.4	protein_coding		Encodes a fumarase enzyme initially shown to be in the mitochondria through proteomic studies but later shown to be present in the cytosol using an RFP fluorescent protein tag. It appears to be important for the accumulation of fumarate from malate in leaves in the light, and helps to promote nitrogen assimilation under high nitrogen conditions. It does not appear to be necessary for lipid metabolism and seedling growth. Inhibition of fumarate accumulation results in an overall shift in the cold response of leaves, with a complete inhibition of cold acclimation of photosynthesis.	FUMARASE 2;(source:Araport11)
AT5G02645.1	long_noncoding_rna			None;(source:Araport11)
AT4G14240.3	protein_coding			CBS domain protein with a domain protein (DUF21);(source:Araport11)
AT1G04213.1	small_nucleolar_rna			None;(source:Araport11)
AT3G01295.1	long_noncoding_rna			None;(source:Araport11)
AT3G09370.3	protein_coding		C-myb-like transcription factor (MYB3R3) mRNA. It is a target of CDK phosphorylation and  blocks cell division in response to DNA damage.	myb domain protein 3r-3;(source:Araport11)
AT5G47380.2	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT3G45020.3	protein_coding			Ribosomal L18p/L5e family protein;(source:Araport11)
AT3G45020.2	protein_coding			Ribosomal L18p/L5e family protein;(source:Araport11)
AT2G07627.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G45020.4	protein_coding			Ribosomal L18p/L5e family protein;(source:Araport11)
AT5G10320.4	protein_coding			ATP synthase subunit B;(source:Araport11)
AT1G68020.3	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain and a trehalose phosphatase (TPP)-like domain. It can complement a yeast mutant lacking both of these activities suggesting that this is a bifunctional enzyme.	UDP-Glycosyltransferase / trehalose-phosphatase family protein;(source:Araport11)
AT5G23480.5	protein_coding			SWIB/MDM2, Plus-3 and GYF domain-containing protein;(source:Araport11)
AT5G10320.5	protein_coding			ATP synthase subunit B;(source:Araport11)
AT1G04230.2	protein_coding			rRNA-processing EFG1-like protein (DUF2361);(source:Araport11)
AT1G30972.3	protein_coding		Encodes a Plant thionin family protein	Plant thionin family protein;(source:Araport11)
AT4G06715.1	long_noncoding_rna			None;(source:Araport11)
AT3G07780.2	protein_coding		Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.The mRNA is cell-to-cell mobile.	potyvirus VPg interacting protein (DUF1423);(source:Araport11)
AT3G07780.3	protein_coding		Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.The mRNA is cell-to-cell mobile.	potyvirus VPg interacting protein (DUF1423);(source:Araport11)
AT2G37200.2	protein_coding			Uncharacterized protein family (UPF0497);(source:Araport11)
AT2G02540.2	protein_coding		Zinc finger homeobox protein. Expressed in vascular tissue.	homeobox protein 21;(source:Araport11)
AT5G41780.3	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT1G68872.4	other_rna			None;(source:Araport11)
AT5G48545.3	protein_coding		Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.	histidine triad nucleotide-binding 3;(source:Araport11)
AT4G06895.1	long_noncoding_rna			None;(source:Araport11)
AT1G05163.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G15410;(source:Araport11)
AT2G00800.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G68872.2	other_rna			None;(source:Araport11)
AT3G13600.2	protein_coding			calmodulin-binding family protein;(source:Araport11)
AT3G21215.4	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G21215.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G21215.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G58120.2	protein_coding		Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.	Basic-leucine zipper (bZIP) transcription factor family protein;(source:Araport11)
AT5G36225.1	protein_coding			zinc knuckle protein;(source:Araport11)
AT2G32520.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G01160.2	protein_coding		Encodes a member of a core set of mRNA m6A writer proteins and is required for N6-adenosine methylation of mRNA.	RING/U-box superfamily protein;(source:Araport11)
AT2G00810.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G10470.2	protein_coding		Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.	response regulator 4;(source:Araport11)
AT1G10470.3	protein_coding		Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.	response regulator 4;(source:Araport11)
AT4G34140.7	protein_coding			D111/G-patch domain-containing protein;(source:Araport11)
AT4G34140.6	protein_coding			D111/G-patch domain-containing protein;(source:Araport11)
AT4G34140.5	protein_coding			D111/G-patch domain-containing protein;(source:Araport11)
AT4G34140.4	protein_coding			D111/G-patch domain-containing protein;(source:Araport11)
AT4G14930.2	protein_coding			Survival protein SurE-like phosphatase/nucleotidase;(source:Araport11)
AT2G09310.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G41770;(source:Araport11)
AT5G49500.2	protein_coding			Signal recognition particle, SRP54 subunit protein;(source:Araport11)
AT5G12440.12	protein_coding			CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT4G34140.9	protein_coding			D111/G-patch domain-containing protein;(source:Araport11)
AT4G34140.8	protein_coding			D111/G-patch domain-containing protein;(source:Araport11)
AT1G33320.3	protein_coding			Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT5G55970.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G07335.1	long_noncoding_rna			None;(source:Araport11)
AT2G07637.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G05115.1	small_nuclear_rna			U2;(source:Araport11)
AT2G06405.1	long_noncoding_rna			None;(source:Araport11)
AT3G43810.3	protein_coding		EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant.	calmodulin 7;(source:Araport11)
AT4G13330.5	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G30305.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G08835.1	long_noncoding_rna			None;(source:Araport11)
AT4G13390.3	protein_coding			Proline-rich extensin-like family protein;(source:Araport11)
AT4G13390.2	protein_coding			Proline-rich extensin-like family protein;(source:Araport11)
AT2G07925.1	long_noncoding_rna			None;(source:Araport11)
AT5G52170.3	protein_coding		Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	homeodomain GLABROUS 7;(source:Araport11)
AT5G52170.2	protein_coding		Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	homeodomain GLABROUS 7;(source:Araport11)
AT1G16710.6	protein_coding		Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates.  No  single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides,  suggesting that HAC12 can acetylate any  of several lysines present in the peptides.	histone acetyltransferase of the CBP family 12;(source:Araport11)
AT2G28290.4	protein_coding		Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral  homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates  flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation.  Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms  differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G28290.5	protein_coding		Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral  homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates  flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation.  Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms  differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G47730.2	protein_coding		Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	glutathione S-transferase phi 8;(source:Araport11)
AT4G06225.1	long_noncoding_rna			None;(source:Araport11)
AT2G30480.13	protein_coding			hypothetical protein;(source:Araport11)
AT1G11580.2	protein_coding			methylesterase PCR A;(source:Araport11)
AT5G49110.4	protein_coding			fanconi anemia group I-like protein;(source:Araport11)
AT3G01925.1	antisense_rna			Natural antisense transcript overlaps with AT3G07080;(source:Araport11)
AT1G01335.1	protein_coding		AREP1 is an auxin inducible  peptide. It contains an AuXRE motif in its promoter and is expressed in cotyledon and root tissues. Loss of function mutants show impaired root formation indicating a role in root development.	auxin-responsive endogenous peptide protein;(source:Araport11)
AT3G04395.1	long_noncoding_rna			None;(source:Araport11)
AT5G56190.4	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G01770.3	protein_coding		Encodes one of two Arabidopsis RAPTOR/KOG1 homologs.  RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients.   Mutations in this gene have no visible effects on embryo or plant development.	regulatory-associated protein of TOR 2 (RAPTOR2);(source:Araport11)
AT5G01770.2	protein_coding		Encodes one of two Arabidopsis RAPTOR/KOG1 homologs.  RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients.   Mutations in this gene have no visible effects on embryo or plant development.	regulatory-associated protein of TOR 2 (RAPTOR2);(source:Araport11)
AT5G01770.5	protein_coding		Encodes one of two Arabidopsis RAPTOR/KOG1 homologs.  RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients.   Mutations in this gene have no visible effects on embryo or plant development.	regulatory-associated protein of TOR 2 (RAPTOR2);(source:Araport11)
AT5G01770.4	protein_coding		Encodes one of two Arabidopsis RAPTOR/KOG1 homologs.  RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients.   Mutations in this gene have no visible effects on embryo or plant development.	regulatory-associated protein of TOR 2 (RAPTOR2);(source:Araport11)
AT1G04197.1	small_nucleolar_rna			None;(source:Araport11)
AT5G45210.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G32000.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G32000.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G05590.4	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in the tryptophan biosynthetic pathway.	phosphoribosylanthranilate isomerase 2;(source:Araport11)
AT4G27650.3	protein_coding		Encodes Arabidopsis homolog of Drosophila pelota protein. Functions in RNA the non-stop decay (NSD) and no-go decay (NGD) quality control systems that act during translation.	Eukaryotic release factor 1 (eRF1) family protein;(source:Araport11)
AT4G27650.2	protein_coding		Encodes Arabidopsis homolog of Drosophila pelota protein. Functions in RNA the non-stop decay (NSD) and no-go decay (NGD) quality control systems that act during translation.	Eukaryotic release factor 1 (eRF1) family protein;(source:Araport11)
AT1G18650.2	protein_coding		Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.	plasmodesmata callose-binding protein 3;(source:Araport11)
AT4G19660.2	protein_coding		Encodes NPR4, a ankyrin repeat BTB/POZ domain-containing  protein with 36% sequence identity with NPR1.  Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways. NPR3 and NPR4 are receptors for the immune signal salicylic acid.	NPR1-like protein 4;(source:Araport11)
AT4G01960.3	protein_coding			transmembrane protein;(source:Araport11)
AT4G01960.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G61430.4	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT3G05985.1	miRNA_primary_transcript			microRNA ath-MIR8183 precursor;(source:Araport11)
AT5G00385.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G51160.3	protein_coding		TRAPP protein BET5 homolog.	SNARE-like superfamily protein;(source:Araport11)
AT5G11490.3	protein_coding		Encodes a component of the AP4 complex and is involved in vacuolar sorting of storage proteins.	adaptin family protein;(source:Araport11)
AT1G61430.7	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G05203.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G15810;(source:Araport11)
AT5G04185.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G25940;(source:Araport11)
AT1G11660.4	protein_coding			heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT2G19830.2	protein_coding			SNF7 family protein;(source:Araport11)
AT4G08180.4	protein_coding			OSBP(oxysterol binding protein)-related protein 1C;(source:Araport11)
AT1G44446.4	protein_coding		Encodes chlorophyllide <i>a</i> oxygenase which converts chlorophyllide <i>a</i> to chlorophyllide <i>b</i> by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide <i>a</i> .  Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll <i>b</i> and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22.	Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein;(source:Araport11)
AT4G02760.7	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT1G06710.15	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G17890.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G17890.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G02885.1	long_noncoding_rna			None;(source:Araport11)
AT5G23490.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G34310.4	protein_coding			hypothetical protein;(source:Araport11)
AT2G34310.5	protein_coding			hypothetical protein;(source:Araport11)
AT2G34310.6	protein_coding			hypothetical protein;(source:Araport11)
AT2G34310.7	protein_coding			hypothetical protein;(source:Araport11)
AT3G60040.5	protein_coding			F-box family protein;(source:Araport11)
AT3G53240.3	protein_coding			receptor like protein 45;(source:Araport11)
AT5G25755.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G27680.3	protein_coding			RECQ helicase SIM;(source:Araport11)
AT5G27680.2	protein_coding			RECQ helicase SIM;(source:Araport11)
AT4G23895.4	protein_coding			Pleckstrin homology (PH) domain-containing protein;(source:Araport11)
AT5G27680.4	protein_coding			RECQ helicase SIM;(source:Araport11)
AT5G41960.2	protein_coding			zinc finger matrin-type protein;(source:Araport11)
AT5G27680.6	protein_coding			RECQ helicase SIM;(source:Araport11)
AT1G01760.2	protein_coding			denosine deaminases acting on tRNA;(source:Araport11)
AT1G01760.3	protein_coding			denosine deaminases acting on tRNA;(source:Araport11)
AT1G05683.1	long_noncoding_rna			None;(source:Araport11)
AT5G23760.2	protein_coding			Copper transport protein family;(source:Araport11)
AT1G01760.4	protein_coding			denosine deaminases acting on tRNA;(source:Araport11)
AT2G08415.1	long_noncoding_rna			None;(source:Araport11)
AT5G06015.1	long_noncoding_rna			None;(source:Araport11)
AT5G02510.2	protein_coding			UDP-glucose 6-dehydrogenase;(source:Araport11)
AT1G16270.3	protein_coding			kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT1G21360.2	protein_coding			glycolipid transfer protein 2;(source:Araport11)
AT3G23420.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT1G05360.2	protein_coding		KMS2 encode a endoplasmic reticulum protein  involved in the early secretory pathway.	vacuole membrane-like protein;(source:Araport11)
AT1G09765.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09765.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G21360.3	protein_coding			glycolipid transfer protein 2;(source:Araport11)
AT5G14400.3	protein_coding		Encodes a brassinosteroid C-22 hydroxylase.	cytochrome P450, family 724, subfamily A, polypeptide 1;(source:Araport11)
AT2G17410.3	protein_coding		AT Rich domain protein.	ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT2G04065.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G01630;(source:Araport11)
AT2G32520.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G07035.1	long_noncoding_rna			None;(source:Araport11)
AT5G09045.1	long_noncoding_rna			None;(source:Araport11)
AT4G15080.2	protein_coding			DHHC-type zinc finger family protein;(source:Araport11)
AT1G08007.1	long_noncoding_rna			None;(source:Araport11)
AT2G26650.2	protein_coding		Encodes AKT1, a member of the Shaker family inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).	K+ transporter 1;(source:Araport11)
AT3G02677.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G09705.1	small_nucleolar_rna			None;(source:Araport11)
AT4G04665.1	long_noncoding_rna			None;(source:Araport11)
AT2G04285.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G02720;(source:Araport11)
AT2G42810.5	protein_coding		Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. The gene is alternately spliced. This variant is an integral membrane protein localized to the ER and nuclear envelope. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.  It also regulates tetrapyrrole biosynthesis through the accumulation of Mg-ProtoIX and acts as a negative regulator of photosynthesis associated nuclear gene expression during chloroplast biogenesis and development.	protein phosphatase 5.2;(source:Araport11)
AT1G08927.1	long_noncoding_rna			None;(source:Araport11)
AT5G06445.1	long_noncoding_rna			None;(source:Araport11)
AT3G07390.2	protein_coding		isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.The mRNA is cell-to-cell mobile.	auxin-induced in root cultures-like protein;(source:Araport11)
AT3G09660.3	protein_coding		Encodes a minichromosome maintenance protein that is involved with RAD51 in a backup pathway that repairs meiotic double strand breaks without giving meiotic crossovers when the major pathway, which relies on DMC1, fails.	minichromosome maintenance 8;(source:Araport11)
AT3G54460.2	protein_coding			SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein;(source:Araport11)
AT1G07497.1	long_noncoding_rna			None;(source:Araport11)
AT2G25580.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G41340.2	protein_coding		NRPE5-like protein of unknown function; homologous to budding yeast RPB5	RNA polymerase II fifth largest subunit, D;(source:Araport11)
AT2G35060.4	protein_coding		potassium transporter	K+ uptake permease 11;(source:Araport11)
AT3G00340.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G08710.2	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G01750.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT5G47670.3	protein_coding		Encodes LEC1-Like (L1L), closely related to LEC1 (Leafy Cotyledon1).  Functions as a regulator of embryo development.	nuclear factor Y, subunit B6;(source:Araport11)
AT1G05870.6	protein_coding			hypothetical protein (DUF1685);(source:Araport11)
AT1G05870.7	protein_coding			hypothetical protein (DUF1685);(source:Araport11)
AT4G03430.3	protein_coding		Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes.	pre-mRNA splicing factor-like protein;(source:Araport11)
AT1G05870.5	protein_coding			hypothetical protein (DUF1685);(source:Araport11)
AT1G08550.3	protein_coding		Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex	non-photochemical quenching 1;(source:Araport11)
AT3G54320.4	protein_coding		WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation. Splice form 3 is the major form expressed in seedlings.Mutations in the C terminal intrinsically disordered region increase the stability of WRI1 and lead to increased oil production.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT2G06865.1	small_nucleolar_rna			None;(source:Araport11)
AT5G26770.6	protein_coding		NEAP2 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.	myosin heavy chain, cardiac protein;(source:Araport11)
AT5G26770.4	protein_coding		NEAP2 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.	myosin heavy chain, cardiac protein;(source:Araport11)
AT5G26770.5	protein_coding		NEAP2 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.	myosin heavy chain, cardiac protein;(source:Araport11)
AT1G77740.2	protein_coding		Encodes PIP5K2, a phosphatidylinositol-4-phosphate 5-kinase (PtdIns(4)P 5-kinase 2; or PIP5K2 that is involved in regulating lateral root formation and root gravity response.The mRNA is cell-to-cell mobile.	phosphatidylinositol-4-phosphate 5-kinase 2;(source:Araport11)
AT1G67530.4	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT1G55530.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G55530.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G04315.1	long_noncoding_rna			None;(source:Araport11)
AT1G19850.uORF4	uORF			Derives_from AT1G19850;(source:Araport11)
AT5G52840.2	protein_coding			NADH-ubiquinone oxidoreductase-like protein;(source:Araport11)
AT1G04667.1	long_noncoding_rna			None;(source:Araport11)
AT1G08973.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G68290;(source:Araport11)
AT2G36640.2	protein_coding		Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.	embryonic cell protein 63;(source:Araport11)
AT1G34044.2	pseudogene			pseudogene of 50S ribosomal protein L34;(source:Araport11)
AT5G02705.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G17410;(source:Araport11)
AT5G11130.2	protein_coding			Exostosin family protein;(source:Araport11)
AT1G50670.3	protein_coding			OTU-like cysteine protease family protein;(source:Araport11)
AT2G08520.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G32470;(source:Araport11)
AT3G24790.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G65140.3	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT5G58760.2	protein_coding		Encodes a DDB1a interacting protein DDB2 required for UV-B tolerance and genomic integrity.	damaged DNA binding 2;(source:Araport11)
AT2G38980.2	pseudogene			pseudogene of cationic amino acid transporter 4;(source:Araport11)
AT1G09763.1	long_noncoding_rna			None;(source:Araport11)
AT4G31490.2	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT4G31490.3	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT3G17860.4	protein_coding		JAZs are direct targets of the SCFCOI1 E3 ubiquitin-ligase and JA treatment  induces their proteasome-mediated degradation. Furthermore, JAI3 negatively  regulates the key transcriptional activator of JA responses, AtMYC2. The C-terminal portion of JAZ3, including the Jas domain, appears to be important for JAZ3-COI1 binding in the presence of coronatine.	jasmonate-zim-domain protein 3;(source:Araport11)
AT5G48775.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G48770;(source:Araport11)
AT3G01275.1	long_noncoding_rna			None;(source:Araport11)
AT2G08110.1	long_noncoding_rna			None;(source:Araport11)
AT4G38062.1	protein_coding			basic helix loop helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G52070.5	protein_coding			Agenet domain-containing protein;(source:Araport11)
AT5G00800.1	long_noncoding_rna			None;(source:Araport11)
AT2G06565.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G25585.5	protein_coding		aminoalcoholphosphotransferase (AAPT2)	aminoalcoholphosphotransferase;(source:Araport11)
AT3G09790.2	protein_coding		encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions.	ubiquitin 8;(source:Araport11)
AT2G08130.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G25280;(source:Araport11)
AT1G09277.1	other_rna			None;(source:Araport11)
AT5G07775.1	small_nuclear_rna			U1;(source:Araport11)
AT4G22860.3	protein_coding			Cell cycle regulated microtubule associated protein;(source:Araport11)
AT5G42230.2	protein_coding			serine carboxypeptidase-like 41;(source:Araport11)
AT1G75410.3	protein_coding		BEL1-like homeodomain 3 (BLH3)	BEL1-like homeodomain 3;(source:Araport11)
AT5G05310.7	protein_coding			TLC ATP/ADP transporter;(source:Araport11)
AT5G05310.6	protein_coding			TLC ATP/ADP transporter;(source:Araport11)
AT5G05310.5	protein_coding			TLC ATP/ADP transporter;(source:Araport11)
AT4G35970.2	protein_coding		Encodes a microsomal ascorbate peroxidase APX5.  Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells.  Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	ascorbate peroxidase 5;(source:Araport11)
AT3G56860.10	protein_coding		encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3 Prime-UTRs and contributing to the stabilization of mRNAs in the nucleus.	UBP1-associated protein 2A;(source:Araport11)
AT1G47657.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G05310.8	protein_coding			TLC ATP/ADP transporter;(source:Araport11)
AT2G40435.3	protein_coding			transcription factor SCREAM-like protein;(source:Araport11)
AT2G40435.2	protein_coding			transcription factor SCREAM-like protein;(source:Araport11)
AT2G05425.1	long_noncoding_rna			None;(source:Araport11)
AT2G00530.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G06370.4	pseudogene			pseudogene of Alg9-like mannosyltransferase family;(source:Araport11)
AT3G56830.4	protein_coding		Similar in sequence to NPQ6 and NPQ7, but loss of function mutant does not exhibit a nonphotochemical quenching phenotype.	YCF20-like protein (DUF565);(source:Araport11)
AT1G20923.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G20530.2	protein_coding		Protein kinase superfamily protein, expressed in the peroxisome.	Protein kinase superfamily protein;(source:Araport11)
AT1G06370.2	pseudogene			pseudogene of Alg9-like mannosyltransferase family;(source:Araport11)
AT1G06370.3	pseudogene			pseudogene of Alg9-like mannosyltransferase family;(source:Araport11)
AT4G18340.2	protein_coding			Glycosyl hydrolase superfamily protein;(source:Araport11)
AT2G44798.8	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44800;(source:Araport11)
AT1G51270.5	protein_coding			vesicle-associated protein 1-4;(source:Araport11)
AT5G14910.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G51270.7	protein_coding			vesicle-associated protein 1-4;(source:Araport11)
AT1G23260.2	protein_coding		MMZ1/UEV1A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ1/UEV1A and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ1/UEV1A transcripts are found at low levels in most plant organs, but cannot be detected in the pollen. Transcript levels do not appear to be stress-inducible. The uev1a-1 mutant shows normal sensitivity to MMS in germination assays suggesting that UEV1A is not required for DNA damage tolerance during this developmental stage.	MMS ZWEI homologue 1;(source:Araport11)
AT1G09713.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G77122;(source:Araport11)
AT1G30740.2	protein_coding			FAD-binding Berberine family protein;(source:Araport11)
AT1G19650.3	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT2G33735.2	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G09905.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G44350.3	protein_coding		encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA.	Citrate synthase family protein;(source:Araport11)
AT2G35600.3	protein_coding		Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	BREVIS RADIX-like 1;(source:Araport11)
AT1G09283.1	long_noncoding_rna			None;(source:Araport11)
AT4G04890.2	protein_coding		Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression.	protodermal factor 2;(source:Araport11)
AT1G08017.1	long_noncoding_rna			None;(source:Araport11)
AT5G06395.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G42820;(source:Araport11)
AT2G36080.4	protein_coding		Encodes a plant-specific B3 DNA-binding domain transcription factor.  Has transcription repressor activity.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT2G36080.3	protein_coding		Encodes a plant-specific B3 DNA-binding domain transcription factor.  Has transcription repressor activity.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G36150.2	protein_coding			putative pentacyclic triterpene synthase 3;(source:Araport11)
AT1G09537.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G75170;(source:Araport11)
AT3G06190.4	protein_coding		Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).	BTB-POZ and MATH domain 2;(source:Araport11)
AT5G24160.2	protein_coding			squalene monooxygenase 6;(source:Araport11)
AT2G09660.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G45720;(source:Araport11)
AT1G49140.2	protein_coding			NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 10-B-like protein (Complex I subunit NDUFS6);(source:Araport11)
AT1G21580.3	protein_coding		Encodes a zinc-finger protein that co-localizes with the exosome-associated RNA helicase HEN2 and functions as a co-factor of nuclear RNA quality control by the nucleoplasmic exosome.	Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G07335.1	small_nuclear_rna			U4;(source:Araport11)
AT5G07985.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G53370;(source:Araport11)
AT5G66130.2	protein_coding		Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination.  Mutant has increased sensitivity to MMS and increased telomere lengths.	RADIATION SENSITIVE 17;(source:Araport11)
AT4G03255.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G66530.3	protein_coding			Galactose mutarotase-like superfamily protein;(source:Araport11)
AT5G64520.5	protein_coding		Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.	homolog of X-ray repair cross complementing 2 (XRCC2);(source:Araport11)
AT1G71920.4	protein_coding		Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.	HISTIDINE BIOSYNTHESIS 6B;(source:Araport11)
AT4G38040.2	protein_coding			Exostosin family protein;(source:Araport11)
AT5G64520.4	protein_coding		Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.	homolog of X-ray repair cross complementing 2 (XRCC2);(source:Araport11)
AT4G07260.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G24370;(source:Araport11)
AT2G05105.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G23510.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G23510.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G03765.1	long_noncoding_rna			None;(source:Araport11)
AT5G64520.6	protein_coding		Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.	homolog of X-ray repair cross complementing 2 (XRCC2);(source:Araport11)
AT5G15537.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G15537.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G04763.1	long_noncoding_rna			None;(source:Araport11)
AT5G27140.2	protein_coding			NOP56-like pre RNA processing ribonucleoprotein;(source:Araport11)
AT3G61080.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G24929.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G24929.6	protein_coding			hypothetical protein;(source:Araport11)
AT3G24929.7	protein_coding			hypothetical protein;(source:Araport11)
AT3G24929.4	protein_coding			hypothetical protein;(source:Araport11)
AT3G24929.5	protein_coding			hypothetical protein;(source:Araport11)
AT5G07100.4	protein_coding		Encodes WRKY DNA-binding protein 26 (WRKY26).	WRKY DNA-binding protein 26;(source:Araport11)
AT1G01580.2	protein_coding		Encodes the low-iron-inducible ferric chelate reductase responsible for reduction of iron at the root surface.  It is likely to be the major Fe(III) chelate reductase in Arabidopsis iron metabolism.  Coordinately regulated with IRT1, the major transporter responsible for high-affinity iron uptake from the soil, at both transcriptional and posttranscriptional levels. Steady state mRNA levels are regulated by several metals.  Its transcription is regulated by FIT1.	ferric reduction oxidase 2;(source:Araport11)
AT5G55590.2	protein_coding		Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.	Pectin lyase-like superfamily protein;(source:Araport11)
AT1G04367.1	long_noncoding_rna			None;(source:Araport11)
AT4G05935.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G11970;(source:Araport11)
AT5G03135.1	long_noncoding_rna			None;(source:Araport11)
AT5G08860.1	small_nucleolar_rna			None;(source:Araport11)
AT2G32260.2	protein_coding			phosphorylcholine cytidylyltransferase;(source:Araport11)
AT3G24630.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G09845.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09845.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09517.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74900;(source:Araport11)
AT1G04337.1	long_noncoding_rna			None;(source:Araport11)
AT3G17280.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G21950.6	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G48460.2	protein_coding			tRNA-processing ribonuclease BN;(source:Araport11)
AT5G64550.uORF1	uORF			Derives_from AT5G64550;(source:Araport11)
AT3G09600.9	protein_coding		Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. Functions as a transcriptional activator of evening element containing clock genes. Involved in heat shock response.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G09600.8	protein_coding		Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. Functions as a transcriptional activator of evening element containing clock genes. Involved in heat shock response.	Homeodomain-like superfamily protein;(source:Araport11)
AT5G41990.uORF1	uORF			Derives_from AT5G41990;(source:Araport11)
AT2G01735.2	protein_coding		encodes a RING-H2 zinc finger protein essential for seed development.	RING-finger protein for embryogenesi;(source:Araport11)
AT3G13790.4	protein_coding		Encodes a protein with invertase activity.	Glycosyl hydrolases family 32 protein;(source:Araport11)
AT3G09600.3	protein_coding		Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. Functions as a transcriptional activator of evening element containing clock genes. Involved in heat shock response.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G06327.1	long_noncoding_rna			None;(source:Araport11)
AT3G09600.7	protein_coding		Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. Functions as a transcriptional activator of evening element containing clock genes. Involved in heat shock response.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G09600.6	protein_coding		Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. Functions as a transcriptional activator of evening element containing clock genes. Involved in heat shock response.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G52180.3	protein_coding		Encodes a plant-specific glucan phosphatase that contains a noncatalytic  carbohydrate-binding module as well as a dual specificity protein phosphatase domain. SEX4 can dephosphorylate C6- and C3-glucosyl residues on native starch grains and related maltodextrin compounds in vitro. This protein interacts with the plant SnRK AKIN11, binds starch, and is localized in the chloroplast. sex4 mutants have elevated levels of starch.	dual specificity protein phosphatase (DsPTP1) family protein;(source:Araport11)
AT3G44010.2	protein_coding			Ribosomal protein S14p/S29e family protein;(source:Araport11)
AT2G39855.5	protein_coding			plant/protein;(source:Araport11)
AT1G78720.2	protein_coding			SecY protein transport family protein;(source:Araport11)
AT1G78720.3	protein_coding			SecY protein transport family protein;(source:Araport11)
AT2G39855.4	protein_coding			plant/protein;(source:Araport11)
AT1G08943.1	novel_transcribed_region			novel transcribed region; detected in carpel, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT4G05705.1	long_noncoding_rna			None;(source:Araport11)
AT3G57330.2	protein_coding		Lesion mimic phenotype when mutation in the gene is combined with a mutation in ACA4.  Lesion mimic phenotype of double knockout can be suppressed by nutritional supplements that increase anion levels (e.g. 15 mM Nitrate, Chloride, or Phosphate)	autoinhibited Ca2+-ATPase 11;(source:Araport11)
AT4G06385.1	long_noncoding_rna			None;(source:Araport11)
AT1G50730.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G50730.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G11340.3	protein_coding			G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT1G11340.2	protein_coding			G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT3G08235.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52110;(source:Araport11)
AT2G05875.1	long_noncoding_rna			None;(source:Araport11)
AT1G48285.1	protein_coding			GRF zinc finger protein;(source:Araport11)
AT1G62895.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G11815.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G34990.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G24350.5	protein_coding			Acid phosphatase/vanadium-dependent haloperoxidase-related protein;(source:Araport11)
AT3G04220.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G04220.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G17980.2	protein_coding		Encodes ANAC071, a transcription factor involved in cell proliferation in incised inflorescence stems.	NAC domain containing protein 71;(source:Araport11)
AT5G03620.2	protein_coding			Subtilisin-like serine endopeptidase family protein;(source:Araport11)
AT1G06227.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G29418;(source:Araport11)
AT2G08640.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33847;(source:Araport11)
AT2G23940.3	protein_coding			transmembrane protein (DUF788);(source:Araport11)
AT3G20370.2	protein_coding			TRAF-like family protein;(source:Araport11)
AT1G73910.2	protein_coding		Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component  of chromatin remodeling complexes, involved in chromatin-mediated gene regulation.	actin-related proteins 4A;(source:Araport11)
AT5G04955.1	miRNA_primary_transcript			microRNA ath-MIR5643a precursor;(source:Araport11)
AT1G05957.1	long_noncoding_rna			None;(source:Araport11)
AT1G25277.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G53340.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G61400.2	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G07317.1	long_noncoding_rna			None;(source:Araport11)
AT3G03125.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G15518;(source:Araport11)
AT1G63100.2	protein_coding			GRAS family transcription factor;(source:Araport11)
AT1G09533.1	small_nucleolar_rna			None;(source:Araport11)
AT5G14060.3	protein_coding		lysine-sensitive aspartate kinase	Aspartate kinase family protein;(source:Araport11)
AT1G69740.3	protein_coding		Encodes a putative 5-aminolevulinate dehydratase involved in chlorophyll biosynthesis.	Aldolase superfamily protein;(source:Araport11)
AT1G67900.6	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G29890.3	protein_coding		Encodes a homolog of the protein Cas1p known to be involved in polysaccharide O-acetylation in Cryptococcus neoformans. Has high similarity to RWA2 whose mutant displays reduced acetylation. The protein is expressed in the Golgi and is involved in the acetylation of xylan during secondary wall biosynthesis.	O-acetyltransferase family protein;(source:Araport11)
AT1G67900.4	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G67900.5	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G24275.4	protein_coding			En/Spm-like transposon;(source:Araport11)
AT5G56220.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G24275.1	protein_coding			En/Spm-like transposon;(source:Araport11)
AT3G06375.1	long_noncoding_rna			None;(source:Araport11)
AT1G63950.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G63855.5	protein_coding			Putative methyltransferase family protein;(source:Araport11)
AT1G63855.4	protein_coding			Putative methyltransferase family protein;(source:Araport11)
AT1G01380.2	protein_coding		ETC1 is involved in trichome and root hair patterning in Arabidopsis.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G63855.6	protein_coding			Putative methyltransferase family protein;(source:Araport11)
AT2G41510.2	protein_coding		It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase/dehydrogenase 1;(source:Araport11)
AT2G41510.3	protein_coding		It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase/dehydrogenase 1;(source:Araport11)
AT5G23380.2	protein_coding			hypothetical protein (DUF789);(source:Araport11)
AT5G23380.3	protein_coding			hypothetical protein (DUF789);(source:Araport11)
AT3G47560.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G47560.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G04463.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G06450;(source:Araport11)
AT5G26140.3	protein_coding			Putative lysine decarboxylase family protein;(source:Araport11)
AT3G19500.3	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G19500.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G15460.4	protein_coding			membrane-anchored ubiquitin-fold protein 2;(source:Araport11)
AT3G13300.3	protein_coding		Encodes VCS (VARICOSE).   Involved in mRNA decapping.  VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570).  Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro.  DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies.  Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology.  VCS is also required for leaf development.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G08657.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G64190;(source:Araport11)
AT1G19750.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G48610.5	protein_coding			myb-like protein X;(source:Araport11)
AT5G15460.3	protein_coding			membrane-anchored ubiquitin-fold protein 2;(source:Araport11)
AT4G21585.4	protein_coding		Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.	endonuclease 4;(source:Araport11)
AT4G21585.5	protein_coding		Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.	endonuclease 4;(source:Araport11)
AT4G09950.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT4G21585.2	protein_coding		Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.	endonuclease 4;(source:Araport11)
AT4G21585.3	protein_coding		Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.	endonuclease 4;(source:Araport11)
AT2G00510.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G11860.5	protein_coding		Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).	SCP1-like small phosphatase 5;(source:Araport11)
AT5G03275.1	long_noncoding_rna			None;(source:Araport11)
AT1G22180.4	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G60470.3	protein_coding			C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11)
AT4G29310.2	protein_coding			DUF1005 family protein (DUF1005);(source:Araport11)
AT5G64330.3	protein_coding		Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1. Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light.  Protein contains multiple protein-protein interaction domains.	Phototropic-responsive NPH3 family protein;(source:Araport11)
AT4G15417.2	protein_coding			RNAse II-like 1;(source:Araport11)
AT5G53700.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G06385.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G42760;(source:Araport11)
AT2G41100.5	protein_coding		encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.The mRNA is cell-to-cell mobile.	Calcium-binding EF hand family protein;(source:Araport11)
AT5G64910.5	protein_coding			Serine/Threonine-kinase;(source:Araport11)
AT2G41100.7	protein_coding		encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.The mRNA is cell-to-cell mobile.	Calcium-binding EF hand family protein;(source:Araport11)
AT5G48610.4	protein_coding			myb-like protein X;(source:Araport11)
AT3G04015.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G20730;(source:Araport11)
AT3G20200.4	protein_coding			kinase with adenine nucleotide alpha hydrolases-like domain-containing protein;(source:Araport11)
AT5G16480.2	protein_coding		Encodes an atypical dual-speci&#64257;city phosphatase.	Phosphotyrosine protein phosphatases superfamily protein;(source:Araport11)
AT1G09932.3	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT3G22570.2	protein_coding			Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT1G09932.4	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT2G05295.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower;(source:Araport11)
AT4G15640.2	protein_coding			adenylyl cyclase;(source:Araport11)
AT1G43815.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G43815.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G64630.uORF1	uORF			Derives_from AT1G64630;(source:Araport11)
AT2G28590.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G09270.1	long_noncoding_rna			None;(source:Araport11)
AT1G30880.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G26060.3	protein_coding		encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus	Thioredoxin superfamily protein;(source:Araport11)
AT2G08330.1	antisense_rna			Natural antisense transcript overlaps with AT2G29180;(source:Araport11)
AT4G27180.2	protein_coding		kinesin heavy chain subunit	kinesin 2;(source:Araport11)
AT1G47500.2	protein_coding			RNA-binding protein 47C;(source:Araport11)
AT4G24260.3	protein_coding		Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by  Heterodera schachtii.May be involved in the development and function of syncitia.	glycosyl hydrolase 9A3;(source:Araport11)
AT1G67210.3	protein_coding			Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT4G13800.7	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT3G00220.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G09500.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G43790;(source:Araport11)
AT4G13800.3	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT4G13800.2	protein_coding			magnesium transporter NIPA (DUF803);(source:Araport11)
AT3G26100.3	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT1G04473.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G06500;(source:Araport11)
AT3G26100.6	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G26100.5	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G26100.4	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT3G08075.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G49720;(source:Araport11)
AT4G09785.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G39040;(source:Araport11)
AT3G47990.3	protein_coding			SUGAR-INSENSITIVE 3;(source:Araport11)
AT1G72760.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G47990.5	protein_coding			SUGAR-INSENSITIVE 3;(source:Araport11)
AT3G47990.4	protein_coding			SUGAR-INSENSITIVE 3;(source:Araport11)
AT1G09563.1	long_noncoding_rna			None;(source:Araport11)
AT1G54390.8	protein_coding		ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	PHD finger protein-like protein;(source:Araport11)
AT2G02765.2	protein_coding			L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase;(source:Araport11)
AT1G60090.2	protein_coding			beta glucosidase 4;(source:Araport11)
AT4G34400.2	protein_coding		B3-type transcription factor, which promotes floral transition and is repressed by FLC/SVP and promoted by SOC1.	AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G51670.2	protein_coding			hypothetical protein (DUF668);(source:Araport11)
AT3G10860.2	protein_coding			Cytochrome b-c1 complex, subunit 8 protein;(source:Araport11)
AT5G04370.3	protein_coding		A member of the Arabidopsis SABATH methyltransferase gene family.  Encodes NAMT1, a methyltransferase that methylates nicotinic acid to yield methyl nicotinate.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G54390.7	protein_coding		ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	PHD finger protein-like protein;(source:Araport11)
AT5G60560.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G07215.1	long_noncoding_rna			None;(source:Araport11)
AT3G04955.1	long_noncoding_rna			None;(source:Araport11)
AT3G07585.1	long_noncoding_rna			None;(source:Araport11)
AT1G09055.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G00330.2	protein_coding		high overall homology to CRCK1	calmodulin-binding receptor-like cytoplasmic kinase 2;(source:Araport11)
AT5G61120.2	protein_coding			zinc ion-binding protein;(source:Araport11)
AT2G29910.4	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G31880.2	protein_coding		Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as regulation of auxin-responsive gene expression. Also involved in cytokinin-mediated inhibition of lateral root initiation.  A loss-of-function allele, named brx-2 in   Rodrigues et al. (2009) Plant Physiol. but changed to brx-3 to resolve nomenclature conflict (Li et al. Planta 2009:229(3):593-603), shows enhanced response to ABA-mediated inhibition of root growth. Plasma-membrane-associated element of a molecular rheostat that modulates auxin flux through developing protophloem sieve elements (PPSEs) while interacting with PAX, thereby timing PPSE differentiation. Dampens PIN-mediated auxin efflux.	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein;(source:Araport11)
AT5G08750.7	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G09515.1	small_nucleolar_rna			None;(source:Araport11)
AT3G44740.5	protein_coding			Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT3G44740.4	protein_coding			Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT4G02020.4	protein_coding		encodes a polycomb group protein EZA1.  Also known as SWINGER (SWN).  Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF).  The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA  in controlling seed initiation by helping to suppress central cell  nucleusendosperm proliferation within the FG.	SET domain-containing protein;(source:Araport11)
AT4G08755.1	small_nuclear_rna			U6;(source:Araport11)
AT3G44740.3	protein_coding			Class II aaRS and biotin synthetases superfamily protein;(source:Araport11)
AT2G16365.5	protein_coding		PCH1 binds and stabilizes the active (Pfr) form of phytochrome B and is involved in the formation of photobodies in the nucleus. PCH1 is expressed in evenings and is associated to the evening complex through binding to phyB, and represses hypocotyl elongation and growth. Using mass spec, the existence of the At2g16365.2 isoform has been verified, however here is no evidence that any of the other three variants are present. Atg2G16365.2 will be assigned PCH1; exon 4 and 5 in the other variants are actually another gene of the F-box/DUF295 family with gene name FDA10.	F-box family protein;(source:Araport11)
AT4G06335.1	long_noncoding_rna			None;(source:Araport11)
AT1G01560.3	protein_coding		Member of MAP Kinase family. Flg22-induced activation is blocked by AvrRpt2.	MAP kinase 11;(source:Araport11)
AT1G01560.4	protein_coding		Member of MAP Kinase family. Flg22-induced activation is blocked by AvrRpt2.	MAP kinase 11;(source:Araport11)
AT2G30990.4	protein_coding			arginine N-methyltransferase, putative (DUF688);(source:Araport11)
AT4G25225.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G72700.3	protein_coding			ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT5G05185.1	miRNA_primary_transcript			microRNA ath-MIR2937 precursor;(source:Araport11)
AT1G01715.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G21100.2	protein_coding			Disease resistance-responsive (dirigent-like protein) family protein;(source:Araport11)
AT3G17300.3	protein_coding			COMPLEX 1 LYR-like protein;(source:Araport11)
AT1G01715.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G60210.4	protein_coding		Encodes RIP5 (ROP interactive partner 5), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants).	ROP interactive partner 5;(source:Araport11)
AT1G10200.2	protein_coding		Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns.  WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.	GATA type zinc finger transcription factor family protein;(source:Araport11)
AT2G44990.3	protein_coding		More Axillary Branching; carotenoid cleavage dioxygenases.	carotenoid cleavage dioxygenase 7;(source:Araport11)
AT2G44990.2	protein_coding		More Axillary Branching; carotenoid cleavage dioxygenases.	carotenoid cleavage dioxygenase 7;(source:Araport11)
AT4G24175.2	protein_coding			kinesin-like protein;(source:Araport11)
AT3G16030.4	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT3G63450.4	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G63450.5	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G50240.3	protein_coding		The FUSED (FU) gene belongs to Ser/Thr protein kinase family and has a key role in the hedgehog signaling pathway known to control cell proliferation and patterning in fruit flies and humans . Arabidopsis thaliana genome has a single Fu gene that is involved in male meiosis cytokinesis. Cytokinesis-defective mutants, named two-in-one (tio), result from mutations in Arabidopsis Fu. Phenotypic analysis of tio mutants reveals an essential role for TIO in conventional modes of cytokinesis in plant meristems and during male gametogenesis. TIO is tightly localized to the midline of the nascent phragmoplast and remains associated with the expanding phragmoplast ring. This gene was previously annotated as two gene models, AT1G50230.1 and AT1G50240.1, however the experimental evidence exists (Oh et al, Current Biology, 2005) showing that these two models are in fact single gene, named FUSED.	kinase family with ARM repeat domain-containing protein;(source:Araport11)
AT4G21390.2	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT5G44635.2	protein_coding			minichromosome maintenance (MCM2/3/5) family protein;(source:Araport11)
AT1G11660.3	protein_coding			heat shock protein 70 (Hsp 70) family protein;(source:Araport11)
AT1G06643.1	miRNA_primary_transcript			microRNA ath-MIR5630a precursor;(source:Araport11)
AT2G00570.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G16030.7	protein_coding			lectin protein kinase family protein;(source:Araport11)
AT4G35090.3	protein_coding		Encodes a peroxisomal catalase, highly expressed in bolts and leaves.  mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2  sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene.  Note that in Queval et al. (2007) Plant Journal, 52(4):640, SALK_057998 is named as cat2-1, SALK_076998 is named as cat2-2; in Bueso et al. (2007) Plant Journal, 52(6):1052, SALK_076998 is named as cat2-1. TAIR has adopted the nomenclature consistent with that in Bueso et al. (2007) after consultation with the authors: SALK_076998 (cat2-1), SALK_057998 (cat2-2).	catalase 2;(source:Araport11)
AT1G28350.2	protein_coding			Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT1G28350.3	protein_coding			Nucleotidylyl transferase superfamily protein;(source:Araport11)
AT5G17550.2	protein_coding		Encodes the predominant PEX19 peroxin isoform, a cytosolic chaperone for peroxisome membrane proteins (PMPs) that delivers PMPs to the endoplasmic reticulum or peroxisomal membrane. It is predominantly cytosolic, forms dimers, promotes peroxisome function and is essential for viability.  The protein is farnesylated in vivo through the actions of ERA1 and PLP.	peroxin 19-2;(source:Araport11)
AT2G04842.2	protein_coding		Encodes a dual localized threonyl-tRNA synthetase found both in the mitochondrion and the chloroplast.  Plants mutated in this gene terminate as embryos in the globular stage.	threonyl-tRNA synthetase, putative / threonine-tRNA ligase;(source:Araport11)
AT5G37820.2	protein_coding			NOD26-like intrinsic protein 4;(source:Araport11)
AT3G18850.6	protein_coding			lysophosphatidyl acyltransferase 5;(source:Araport11)
AT5G44578.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G14605.2	protein_coding		Encodes a putative mitochondrial transcription termination factor whose mutation results in plants that exhibit altered chloroplast morphology and plant growth, and reduced pigmentation of cotyledons, leaves, stems and sepals.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT3G57740.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G09675.1	long_noncoding_rna			None;(source:Araport11)
AT5G37470.2	protein_coding			hypothetical protein (DUF577);(source:Araport11)
AT4G16310.4	protein_coding		FAD-dependent lysine-specific histone demethylase involved in the control of flowering time.	LSD1-like 3;(source:Araport11)
AT4G16310.5	protein_coding		FAD-dependent lysine-specific histone demethylase involved in the control of flowering time.	LSD1-like 3;(source:Araport11)
AT4G16310.2	protein_coding		FAD-dependent lysine-specific histone demethylase involved in the control of flowering time.	LSD1-like 3;(source:Araport11)
AT4G16310.3	protein_coding		FAD-dependent lysine-specific histone demethylase involved in the control of flowering time.	LSD1-like 3;(source:Araport11)
AT1G08623.1	long_noncoding_rna			None;(source:Araport11)
AT4G00740.2	protein_coding		Encodes a Golgi-localized type II membrane pectin methyltransferase regulating cell wall biosynthesis in suspension cells.	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT5G59390.3	protein_coding			XH/XS domain-containing protein;(source:Araport11)
AT2G09445.1	long_noncoding_rna			None;(source:Araport11)
AT3G04980.2	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT5G46030.3	protein_coding			transcription elongation factor-like protein;(source:Araport11)
AT5G46030.2	protein_coding			transcription elongation factor-like protein;(source:Araport11)
AT3G09155.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G58780;(source:Araport11)
AT4G15320.3	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase-like B6;(source:Araport11)
AT1G67455.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT4G39180.3	protein_coding		encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae	Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT4G30975.2	other_rna			None;(source:Araport11)
AT2G08875.1	long_noncoding_rna			None;(source:Araport11)
AT3G01195.1	long_noncoding_rna			None;(source:Araport11)
AT1G77160.2	protein_coding			hypothetical protein (DUF506);(source:Araport11)
AT4G28600.3	protein_coding		encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.	no pollen germination related 2;(source:Araport11)
AT4G28600.2	protein_coding		encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.	no pollen germination related 2;(source:Araport11)
AT5G06220.3	protein_coding			LETM1-like protein;(source:Araport11)
AT5G02255.1	small_nuclear_rna			U5;(source:Araport11)
AT4G09495.1	long_noncoding_rna			None;(source:Araport11)
AT5G14610.4	protein_coding			DEAD box RNA helicase family protein;(source:Araport11)
AT1G21313.1	protein_coding			transmembrane protein;(source:Araport11)
AT5G44010.2	protein_coding			fanconi anemia group F protein (FANCF);(source:Araport11)
AT4G14096.2	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT2G14045.4	protein_coding			c-Myc-binding protein;(source:Araport11)
AT5G00430.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G03905.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G39010.2	protein_coding			plasma membrane intrinsic protein 2E;(source:Araport11)
AT5G25790.3	protein_coding			Tesmin/TSO1-like CXC domain-containing protein;(source:Araport11)
AT1G03905.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G20360.7	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT5G01125.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G05980;(source:Araport11)
AT4G06790.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, light-grown seedling, flower, pollen;(source:Araport11)
AT5G13660.3	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT5G13660.4	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT5G13660.5	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT5G13660.6	protein_coding			N-lysine methyltransferase;(source:Araport11)
AT3G03180.3	protein_coding			Got1/Sft2-like vescicle transport protein family;(source:Araport11)
AT5G50665.4	protein_coding			hypothetical protein;(source:Araport11)
AT5G50665.5	protein_coding			hypothetical protein;(source:Araport11)
AT5G50665.6	protein_coding			hypothetical protein;(source:Araport11)
AT1G15350.5	protein_coding			DUF4050 family protein;(source:Araport11)
AT3G63450.7	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G32010.3	protein_coding		Encodes an inositol polyphosphate 5?-phosphatase (5PTase).  Mediating phosphoinositide signaling.  Involved in establishment of foliar vein patterns.	CVP2 like 1;(source:Araport11)
AT5G50665.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G61190.3	protein_coding		Putative CC-NB-LRR resistance gene. It Primes ortholog in ecotype Wei-0 RPP39 (R_190-Wei-0, accession number JQ045573, PMID:22359513) has been shown experimentally to recognize the effector ATR39-1 produced by Hyaloperonospora arabidopsidis (Hpa).The mRNA is cell-to-cell mobile.	LRR and NB-ARC domains-containing disease resistance protein;(source:Araport11)
AT5G20360.3	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT5G20360.2	protein_coding		Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein;(source:Araport11)
AT3G03705.1	long_noncoding_rna			None;(source:Araport11)
AT3G02565.1	antisense_rna			Natural antisense transcript overlaps with AT3G12640;(source:Araport11)
AT1G34010.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G07137.1	miRNA_primary_transcript			microRNA ath-MIR5645d precursor;(source:Araport11)
AT1G43605.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G06083.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G27300;(source:Araport11)
AT1G43605.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G20450.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G30410.4	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 13;(source:Araport11)
AT1G30410.5	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 13;(source:Araport11)
AT1G16780.2	protein_coding		Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.	Inorganic H pyrophosphatase family protein;(source:Araport11)
AT4G27820.2	protein_coding			beta glucosidase 9;(source:Araport11)
AT1G30410.2	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 13;(source:Araport11)
AT1G30410.3	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 13;(source:Araport11)
AT1G09613.1	long_noncoding_rna			None;(source:Araport11)
AT1G09340.2	protein_coding		Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein.  CRB is important for the proper functioning of the chloroplast.  Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.The mRNA is cell-to-cell mobile.	chloroplast RNA binding protein;(source:Araport11)
AT1G35513.2	pseudogene		pseudogene of isochorismate synthase-related / isochorismate mutase-related	pseudogene of ADC synthase superfamily protein;(source:Araport11)
AT1G08047.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G55270;(source:Araport11)
AT2G31083.2	protein_coding		Member of a large family of putative ligands homologous to the Clavata3 gene.  Consists of a single exon.	CLAVATA3/ESR-RELATED 5;(source:Araport11)
AT1G11070.2	protein_coding			hydroxyproline-rich glycoprotein family protein;(source:Araport11)
AT3G14150.5	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G06600.3	protein_coding		At3G06600 encodes the plant KASH protein SINE3; SINE3 interacts with SUN1 and SUN2 and is localized at the nuclear envelope.	transmembrane protein;(source:Araport11)
AT3G14150.7	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G14150.6	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT3G14150.3	protein_coding			Aldolase-type TIM barrel family protein;(source:Araport11)
AT5G07725.1	small_nucleolar_rna			None;(source:Araport11)
AT4G08845.1	long_noncoding_rna			None;(source:Araport11)
AT5G01145.1	small_nucleolar_rna			None;(source:Araport11)
AT1G03620.11	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT2G08775.1	long_noncoding_rna			None;(source:Araport11)
AT1G03620.13	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT1G03620.12	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT5G45500.9	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT2G09335.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42150;(source:Araport11)
AT2G09335.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42150;(source:Araport11)
AT1G25420.4	protein_coding			Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT2G33240.3	protein_coding		member of Myosin-like proteins	myosin XI D;(source:Araport11)
AT2G41740.2	protein_coding		Encodes a protein with high homology to animal villin.	villin 2;(source:Araport11)
AT3G06955.1	long_noncoding_rna			None;(source:Araport11)
AT4G05835.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen;(source:Araport11)
AT5G44590.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT4G04855.1	long_noncoding_rna			None;(source:Araport11)
AT3G42180.5	protein_coding			Exostosin family protein;(source:Araport11)
AT3G42180.4	protein_coding			Exostosin family protein;(source:Araport11)
AT1G04613.1	novel_transcribed_region			novel transcribed region; detected in carpel, leaf, dark-grown seedling, light-grown seedling;(source:Araport11)
AT1G52540.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G04535.1	other_rna			None;(source:Araport11)
AT3G09365.1	long_noncoding_rna			None;(source:Araport11)
AT2G28060.4	protein_coding		Component of the regulatory subunit of SNF1-related protein kinase. As part of the regulatory complex it binds maltose which promotes kinase activity.	5-AMP-activated protein kinase beta-2 subunit protein;(source:Araport11)
AT5G57400.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G09415.1	long_noncoding_rna			None;(source:Araport11)
AT1G05177.1	long_noncoding_rna			None;(source:Araport11)
AT4G04875.1	long_noncoding_rna			None;(source:Araport11)
AT4G33790.2	protein_coding		Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis.	Jojoba acyl CoA reductase-related male sterility protein;(source:Araport11)
AT5G45990.2	protein_coding			crooked neck protein, putative / cell cycle protein;(source:Araport11)
AT1G52245.1	protein_coding			dynein light chain LC6, flagellar outer arm-like protein;(source:Araport11)
AT2G46950.2	protein_coding			cytochrome P450, family 709, subfamily B, polypeptide 2;(source:Araport11)
AT2G28060.2	protein_coding		Component of the regulatory subunit of SNF1-related protein kinase. As part of the regulatory complex it binds maltose which promotes kinase activity.	5-AMP-activated protein kinase beta-2 subunit protein;(source:Araport11)
AT1G02360.3	protein_coding			Chitinase family protein;(source:Araport11)
AT1G02360.2	protein_coding			Chitinase family protein;(source:Araport11)
AT1G80245.7	protein_coding			Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT1G80245.6	protein_coding			Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT1G80245.5	protein_coding			Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT1G80245.4	protein_coding			Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT2G46810.4	protein_coding		MYC-type transcription factor which interacts with ICE1 and negatively regulates cold-responsive genes and cold tolerance.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G25630.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G09595.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G07650.2	protein_coding			Actin-binding FH2 protein;(source:Araport11)
AT2G38320.2	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).TBL34 are required only for xylan 3-O-monoacetylation and 2,3-di-O-acetylation. This biochemical phenotype can be observed in tbl34 esk1, double mutant and tbl34 tbl35 esk1 triple mutants.	TRICHOME BIREFRINGENCE-LIKE 34;(source:Araport11)
AT5G06955.1	other_rna			None;(source:Araport11)
AT1G51405.2	protein_coding			myosin-like protein;(source:Araport11)
AT5G05585.1	long_noncoding_rna			None;(source:Araport11)
AT3G61160.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G03415.1	small_nucleolar_rna			None;(source:Araport11)
AT3G61160.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G12560.2	protein_coding		Encodes a telomeric DNA-binding protein.	TRF-like 9;(source:Araport11)
AT5G60760.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G58100.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G61160.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G05897.1	long_noncoding_rna			None;(source:Araport11)
AT5G02555.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G16560;(source:Araport11)
AT1G29410.4	protein_coding		Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.	phosphoribosylanthranilate isomerase 3;(source:Araport11)
AT1G13860.5	protein_coding		Encodes QUASIMODO2 LIKE1 (QUL1), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.	QUASIMODO2 LIKE 1;(source:Araport11)
AT5G35580.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G46740.2	protein_coding		Encodes a ubiquitin-specific protease.	ubiquitin-specific protease 21;(source:Araport11)
AT2G32500.2	protein_coding			Stress responsive alpha-beta barrel domain protein;(source:Araport11)
AT3G63450.6	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G19080.4	protein_coding			SWIB complex BAF60b domain-containing protein;(source:Araport11)
AT4G27870.2	protein_coding			Vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT1G63680.3	protein_coding		Encodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis.  Localized to plastids.  AtMurE is involved in chloroplast biogenesis.	ALBINO OR PALE-GREEN 13;(source:Araport11)
AT5G60700.2	protein_coding			glycosyltransferase family protein 2;(source:Araport11)
AT1G05873.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G24290;(source:Araport11)
AT1G20060.5	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT2G05300.3	pseudogene		pseudogene of the F-box protein family	pseudogene of F-box family protein;(source:Araport11)
AT2G05300.2	pseudogene		pseudogene of the F-box protein family	pseudogene of F-box family protein;(source:Araport11)
AT5G11300.2	protein_coding		mitotic-like cyclin, core cell cycle gene that is expressed only in roots (RT_PCR), portions with mitotic activity only (whole mount in situ).	mitotic-like cyclin 3B from Arabidopsi;(source:Araport11)
AT1G32380.2	protein_coding		Encodes a P-dependent phosphoribosyl pyrophosphate (PRPP) synthase.	phosphoribosyl pyrophosphate (PRPP) synthase 2;(source:Araport11)
AT5G67180.4	protein_coding			target of early activation tagged (EAT) 3;(source:Araport11)
AT5G67180.2	protein_coding			target of early activation tagged (EAT) 3;(source:Araport11)
AT5G03805.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G24620;(source:Araport11)
AT4G27860.4	protein_coding			vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT2G28910.2	protein_coding		Encodes a CAX-interacting protein (CXIP4). The gene product is located in the nucleus of GFP-CXIP4-expressing yeast cells. When transiently expressed in the tobacco leaves, GFP-CXIP4 locates to the nucleus as well as in discrete areas of the cytoplasm (which do not overlap with mitochondria).	CAX interacting protein 4;(source:Araport11)
AT1G08900.5	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G09435.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G43310;(source:Araport11)
AT4G27860.3	protein_coding			vacuolar iron transporter (VIT) family protein;(source:Araport11)
AT3G13920.5	protein_coding		eukaryotic translation initiation factor 4A-1	eukaryotic translation initiation factor 4A1;(source:Araport11)
AT5G01950.5	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G09677.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G76850;(source:Araport11)
AT3G07085.1	long_noncoding_rna			None;(source:Araport11)
AT1G68170.2	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G45115.1	protein_coding			transcription termination factor family protein;(source:Araport11)
AT2G46450.4	protein_coding		Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.	cyclic nucleotide-gated channel 12;(source:Araport11)
AT4G06643.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G02300.2	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT5G50370.2	protein_coding			Adenylate kinase family protein;(source:Araport11)
AT4G03020.3	protein_coding			transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G55490.3	protein_coding		Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.	gamete expressed protein 1;(source:Araport11)
AT2G43700.3	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT1G04937.1	long_noncoding_rna			None;(source:Araport11)
AT5G55490.2	protein_coding		Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.	gamete expressed protein 1;(source:Araport11)
AT1G75420.3	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT3G58875.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G03225.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G16180;(source:Araport11)
AT2G45405.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G05887.1	long_noncoding_rna			None;(source:Araport11)
AT1G66880.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G10925.4	protein_coding			Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT4G10925.5	protein_coding			Nuclear transport factor 2 (NTF2) family protein;(source:Araport11)
AT1G67700.5	protein_coding			multidrug resistance protein;(source:Araport11)
AT1G08030.2	protein_coding		Encodes a tyrosylprotein sulfotransferase (TPST). This protein is a 500-aa type I transmembrane protein that shows no sequence similarity to animal TPSTs. Activity confirmed by protein expression in yeast.  TPST is expressed throughout the plant body, and the highest levels of expression are in the root apical meristem. TPST acts in the auxin pathway to maintain postembryonic root stem cell niche by defining the expression of the PLETHORA stem cell transcription factor genes. A loss-of-function mutant TPST displayed a marked dwarf phenotype accompanied by stunted roots, pale green leaves, reduction in higher order veins, early senescence, and a reduced number of flowers and siliques. TPST  suppresses ethylene production through the action of PSK (phytosulfokine).	tyrosylprotein sulfotransferase;(source:Araport11)
AT1G05550.4	protein_coding		DUF295 domain protein of unknown function. Expressed in ovule integuments and nucellus.	hypothetical protein (DUF295);(source:Araport11)
AT1G06377.1	long_noncoding_rna			None;(source:Araport11)
AT2G09040.1	long_noncoding_rna			None;(source:Araport11)
AT2G29890.5	protein_coding		Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed.  Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding.  VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.	villin-like 1;(source:Araport11)
AT2G29890.4	protein_coding		Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed.  Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding.  VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.	villin-like 1;(source:Araport11)
AT4G09005.1	long_noncoding_rna			None;(source:Araport11)
AT2G22750.4	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT2G06945.1	long_noncoding_rna			None;(source:Araport11)
AT4G15330.2	protein_coding			cytochrome P450, family 705, subfamily A, polypeptide 1;(source:Araport11)
AT3G04065.1	long_noncoding_rna			None;(source:Araport11)
AT1G08387.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G61420;(source:Araport11)
AT1G71528.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G71530;(source:Araport11)
AT3G00810.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G03195.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G20720;(source:Araport11)
AT3G07795.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G47670;(source:Araport11)
AT4G13280.2	protein_coding		Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.	terpenoid synthase 12;(source:Araport11)
AT2G09060.1	long_noncoding_rna			None;(source:Araport11)
AT3G27550.3	protein_coding		Mitochondrial protein involved in RNA splicing.  Required for normal mitochondrion biogenesis.	RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT3G27550.2	protein_coding		Mitochondrial protein involved in RNA splicing.  Required for normal mitochondrion biogenesis.	RNA-binding CRS1 / YhbY (CRM) domain protein;(source:Araport11)
AT4G18140.6	protein_coding		Encodes a SCP1-like small phosphatase (SSP).  Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).	SCP1-like small phosphatase 4b;(source:Araport11)
AT1G15110.4	protein_coding		PSS1 encodes a base-exchange-type Phosphatidylserine (PS) synthase. Mutant analysis revealed its role in pollen maturation.	phosphatidyl serine synthase family protein;(source:Araport11)
AT3G03085.1	long_noncoding_rna			None;(source:Araport11)
AT5G66600.9	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT1G34550.2	protein_coding			transmembrane protein (DUF616);(source:Araport11)
AT5G13480.4	protein_coding		Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time; affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G45405.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G58782.2	protein_coding			Undecaprenyl pyrophosphate synthetase family protein;(source:Araport11)
AT4G11970.7	protein_coding			YTH family protein;(source:Araport11)
AT4G11970.6	protein_coding			YTH family protein;(source:Araport11)
AT4G11970.5	protein_coding			YTH family protein;(source:Araport11)
AT2G20400.2	protein_coding		MYB-CC transcription factor. PHL4 is related to PHR1 (which regulates plant Pi starvation response) but it does not seem to have a significant role in Pi starvation.	myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT5G66675.2	protein_coding			transmembrane protein, putative (DUF677);(source:Araport11)
AT2G46380.2	protein_coding			extra-large G-like protein, putative (DUF3133);(source:Araport11)
AT5G40490.2	protein_coding		HLP1 is a member of the conserved hnRNP A/B family and contains RNA Recognition Motifs (RRM).It binds mRNA and appears to be involved in targeting alternative polyadenylation (APA). APA targets include genes involved in flowering. Loss of HLP1 function results causes late flowering under long and short day conditions. This phenotype is suppressed by loss of FLC.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G49430.4	protein_coding		Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SER/ARG-rich protein 34A;(source:Araport11)
AT4G16140.2	protein_coding			proline-rich family protein;(source:Araport11)
AT3G49430.6	protein_coding		Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	SER/ARG-rich protein 34A;(source:Araport11)
AT1G11303.1	protein_coding			G-type lectin S-receptor-like Serine/Threonine-kinase;(source:Araport11)
AT2G39140.2	protein_coding		Suppressor of var2 variegation phenotype. Chloroplast localized. Loss of function mutant has defects in chloroplast protein translation and rRNA processing. Similar in sequence to pseudouridine synthase proteins.	pseudouridine synthase family protein;(source:Araport11)
AT3G51070.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G08250.1	long_noncoding_rna			None;(source:Araport11)
AT5G05605.1	long_noncoding_rna			None;(source:Araport11)
AT1G04927.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G12140;(source:Araport11)
AT2G07950.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G23740;(source:Araport11)
AT5G25540.2	protein_coding		Expressed protein contains PAM2 PABC interacting domain.	CTC-interacting domain 6;(source:Araport11)
AT5G25540.3	protein_coding		Expressed protein contains PAM2 PABC interacting domain.	CTC-interacting domain 6;(source:Araport11)
AT2G39920.4	protein_coding			HAD superfamily, subfamily IIIB acid phosphatase;(source:Araport11)
AT5G52760.2	protein_coding			Copper transport protein family;(source:Araport11)
AT1G62660.2	protein_coding			Glycosyl hydrolases family 32 protein;(source:Araport11)
AT1G62660.3	protein_coding			Glycosyl hydrolases family 32 protein;(source:Araport11)
AT1G62660.4	protein_coding			Glycosyl hydrolases family 32 protein;(source:Araport11)
AT3G19830.4	protein_coding			Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT1G29730.2	protein_coding			Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT2G47860.5	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G05817.1	long_noncoding_rna			None;(source:Araport11)
AT2G16650.2	protein_coding		Encodes a proteinaceous RNase P that supports RNase P activity in vivo in both organelles and the nucleus. It is also involved in the maturation of small nucleolar RNA (snoRNA) and mRNA.	proteinaceous RNase P 2;(source:Araport11)
AT1G02670.5	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G02670.4	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G02670.7	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G02670.6	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G01705.1	long_noncoding_rna			None;(source:Araport11)
AT3G28080.8	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT5G07155.1	long_noncoding_rna			None;(source:Araport11)
AT4G27852.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G27850 and AT4G27860;(source:Araport11)
AT3G21650.2	protein_coding		Encodes protein phosphatase 2A (PP2A) B Primezeta subunit.  Targeted to mitochondria.	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT1G09825.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09825.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09825.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G22200.2	protein_coding		Encodes AKT2, a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation.  Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant.  The channel can coassemble with another K+ channel, KAT1, in vitro.  In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel.  In the phloem, it regulates the sucrose/H+ symporters via the phloem potential.  AKT2 belongs to the Shaker family K+ channels which include the following groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).	potassium transport 2/3;(source:Araport11)
AT3G19810.2	protein_coding			BTB/POZ domain protein, putative (DUF177);(source:Araport11)
AT2G18180.2	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G64710.3	protein_coding			GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT2G38750.2	protein_coding		Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.	annexin 4;(source:Araport11)
AT4G07655.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G26480;(source:Araport11)
AT4G17190.3	protein_coding		Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis.  Its mRNA is most abundantly expressed in flowers.	farnesyl diphosphate synthase 2;(source:Araport11)
AT3G62390.2	protein_coding		Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).	TRICHOME BIREFRINGENCE-LIKE 6;(source:Araport11)
AT3G46520.2	protein_coding		Member of actin subclass composed of ACT12 and ACT4.  RNA is expressed at very low levels in vegetative organs, low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues, tapetum, developing and mature pollen, the root cap and in a ring of pericycle tissues during lateral root initiation and early development.	actin-12;(source:Araport11)
AT1G10970.2	protein_coding		A member of Zrt- and Irt-related protein (ZIP) family.  transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.	zinc transporter;(source:Araport11)
AT1G09095.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G26530.3	protein_coding			Aldolase superfamily protein;(source:Araport11)
AT2G39330.2	protein_coding			jacalin-related lectin 23;(source:Araport11)
AT4G33920.2	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT4G27852.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G27850 and AT4G27860;(source:Araport11)
AT2G04465.1	long_noncoding_rna			None;(source:Araport11)
AT5G48880.4	protein_coding		Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.	peroxisomal 3-keto-acyl-CoA thiolase 2;(source:Araport11)
AT2G42170.3	protein_coding			Actin family protein;(source:Araport11)
AT5G22940.2	protein_coding		Homolog of FRA8 (AT2G28110), a member of a member of glycosyltransferase family 47; exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase.	glucuronoxylan glucuronosyltransferase, putative;(source:Araport11)
AT5G30500.2	protein_coding			Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11)
AT1G09475.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09475.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G62570.4	protein_coding			Calmodulin binding protein-like protein;(source:Araport11)
AT1G04993.1	miRNA_primary_transcript			microRNA ath-MIR8166 precursor;(source:Araport11)
AT4G09715.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G38560;(source:Araport11)
AT4G09620.3	protein_coding			Mitochondrial transcription termination factor family protein;(source:Araport11)
AT4G29540.4	protein_coding		Encodes a UDP-N-acetylglucosamine acyltransferase.	bacterial transferase hexapeptide repeat-containing protein;(source:Araport11)
AT1G15020.3	protein_coding		Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.	quiescin-sulfhydryl oxidase 1;(source:Araport11)
AT4G32080.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G03195.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03195.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03195.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G05665.1	long_noncoding_rna			None;(source:Araport11)
AT1G07577.1	novel_transcribed_region			novel transcribed region; detected in carpel, light-grown seedling;(source:Araport11)
AT3G00560.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G58350.2	protein_coding		Encodes RTM3 (Restricted Tobacco etch potyvirus Movement), a protein belonging to a protein family of 29 members which has a meprin and TRAF homology (MATH) domain in its N-terminal region and a coiled-coil (CC) domain at its C-terminal end.  There are at least three RTMs in Arabidopsis.  RTM proteins might form a multiprotein complex in the resistance mechanism to block the long distance movement of potyviruses.	RESTRICTED TEV MOVEMENT 3;(source:Araport11)
AT3G00970.1	long_noncoding_rna			None;(source:Araport11)
AT4G09735.1	miRNA_primary_transcript			microRNA ath-MIR8178 precursor;(source:Araport11)
AT1G05397.1	long_noncoding_rna			None;(source:Araport11)
AT5G04395.1	protein_coding			NAC transcription factor-like protein;(source:Araport11)
AT1G80165.1	protein_coding			cotton fiber protein;(source:Araport11)
AT3G09275.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G59940;(source:Araport11)
AT4G18530.2	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707);(source:Araport11)
AT4G18530.3	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707);(source:Araport11)
AT1G35340.7	protein_coding			ATP-dependent protease La (LON) domain protein;(source:Araport11)
AT1G04767.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G10110;(source:Araport11)
AT1G35340.5	protein_coding			ATP-dependent protease La (LON) domain protein;(source:Araport11)
AT4G38340.2	protein_coding		Chip-seq data indicates bZIP1 binds to  the NLP3 promoter.	Plant regulator RWP-RK family protein;(source:Araport11)
AT4G07195.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G24015;(source:Araport11)
AT5G04135.1	long_noncoding_rna			None;(source:Araport11)
AT2G33480.3	protein_coding			NAC domain containing protein 41;(source:Araport11)
AT4G01010.2	protein_coding		member of Cyclic nucleotide gated channel family	cyclic nucleotide-gated channel 13;(source:Araport11)
AT3G07940.2	protein_coding			Calcium-dependent ARF-type GTPase activating protein family;(source:Araport11)
AT4G10350.2	protein_coding		NAC domain protein. SMB, BRN1, and BRN2  act to regulate root cap maturation, in a partially redundant fashion.BRN1 and BRN2, control the cell wall maturation processes that are required to detach root cap layers from the root.	NAC domain containing protein 70;(source:Araport11)
AT5G09435.1	long_noncoding_rna			None;(source:Araport11)
AT4G07095.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G22730;(source:Araport11)
AT3G09635.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G61360;(source:Araport11)
AT4G34240.3	protein_coding		Encodes an aldehyde dehydrogenase induced by ABA and dehydration that can oxidize saturated aliphatic aldehydes. It is also able to oxidize beta-unsaturated aldehydes, but not aromatic aldehydes. ALDH3I1 was able to use both NAD+ and NADP+ as cofactors.	aldehyde dehydrogenase 3I1;(source:Araport11)
AT4G34240.4	protein_coding		Encodes an aldehyde dehydrogenase induced by ABA and dehydration that can oxidize saturated aliphatic aldehydes. It is also able to oxidize beta-unsaturated aldehydes, but not aromatic aldehydes. ALDH3I1 was able to use both NAD+ and NADP+ as cofactors.	aldehyde dehydrogenase 3I1;(source:Araport11)
AT5G65280.2	protein_coding		Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.	GCR2-like 1;(source:Araport11)
AT4G29740.3	protein_coding		It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	cytokinin oxidase 4;(source:Araport11)
AT4G28370.3	protein_coding		Encodes an E3 ubiquitin ligase that is involved in plant cell wall modification, seed mucilage extrusion, and controls the degree of pectin methylesterification in seed mucilage. fly1 mutant seeds release more compact mucilage capsules and detached outer tangential primary walls when hydrated in water. Fly1 is located in the endomembrane system, likely localized in late endosome/multivesicular bodies/prevacular compartment.  It has been shown to ubiquitinate proteins in conjunction with UBA1 and UBC8.	RING/U-box superfamily protein;(source:Araport11)
AT4G28370.2	protein_coding		Encodes an E3 ubiquitin ligase that is involved in plant cell wall modification, seed mucilage extrusion, and controls the degree of pectin methylesterification in seed mucilage. fly1 mutant seeds release more compact mucilage capsules and detached outer tangential primary walls when hydrated in water. Fly1 is located in the endomembrane system, likely localized in late endosome/multivesicular bodies/prevacular compartment.  It has been shown to ubiquitinate proteins in conjunction with UBA1 and UBC8.	RING/U-box superfamily protein;(source:Araport11)
AT4G28370.4	protein_coding		Encodes an E3 ubiquitin ligase that is involved in plant cell wall modification, seed mucilage extrusion, and controls the degree of pectin methylesterification in seed mucilage. fly1 mutant seeds release more compact mucilage capsules and detached outer tangential primary walls when hydrated in water. Fly1 is located in the endomembrane system, likely localized in late endosome/multivesicular bodies/prevacular compartment.  It has been shown to ubiquitinate proteins in conjunction with UBA1 and UBC8.	RING/U-box superfamily protein;(source:Araport11)
AT5G08665.1	long_noncoding_rna			None;(source:Araport11)
AT5G10510.6	protein_coding		Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. It is also required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions. Intronic sequences are required for its expression in flowers.Acts redundantly with PLT5 and 7 in lateral root pattern formation.	AINTEGUMENTA-like 6;(source:Araport11)
AT5G09325.1	long_noncoding_rna			None;(source:Araport11)
AT3G08480.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G55390;(source:Araport11)
AT5G15260.2	protein_coding			ribosomal protein L34e superfamily protein;(source:Araport11)
AT1G06683.1	long_noncoding_rna			None;(source:Araport11)
AT2G07628.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G23730.2	protein_coding			Galactose mutarotase-like superfamily protein;(source:Araport11)
AT3G02955.1	long_noncoding_rna			None;(source:Araport11)
AT1G54960.2	protein_coding		member of MEKK subfamily	NPK1-related protein kinase 2;(source:Araport11)
AT4G07185.1	long_noncoding_rna			None;(source:Araport11)
AT3G04705.1	long_noncoding_rna			None;(source:Araport11)
AT3G15030.4	protein_coding		Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.	TCP family transcription factor 4;(source:Araport11)
AT2G28630.2	protein_coding		Encodes KCS12, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	3-ketoacyl-CoA synthase 12;(source:Araport11)
AT2G20510.3	protein_coding		One of two loci encoding the TIM44 subunit of the mitochondrial inner membrane translocase complex. TIM44 subunit is the part of the complex that hydrolyzes ATP to provide energy for protein translocation to the inner membrane.	translocase inner membrane subunit 44-1;(source:Araport11)
AT3G11470.4	protein_coding			4-phosphopantetheinyl transferase superfamily;(source:Araport11)
AT3G56891.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT1G04897.1	small_nuclear_rna			U4;(source:Araport11)
AT5G10510.5	protein_coding		Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. It is also required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions. Intronic sequences are required for its expression in flowers.Acts redundantly with PLT5 and 7 in lateral root pattern formation.	AINTEGUMENTA-like 6;(source:Araport11)
AT1G06093.1	long_noncoding_rna			None;(source:Araport11)
AT4G39210.2	protein_coding		Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots.	Glucose-1-phosphate adenylyltransferase family protein;(source:Araport11)
AT1G44760.2	protein_coding			Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G03690.2	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT4G22920.2	protein_coding		Similar to the tomato senescence-inducible chloroplast stay-green protein 1.  It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves. Acts antagonistically with SGR2 to balance chlorophyll catabolism in chloroplasts with  the dismantling and remobilizing of other cellular components in senescing leaf cells.	non-yellowing 1;(source:Araport11)
AT5G11210.4	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.5;(source:Araport11)
AT2G43932.2	pseudogene			pseudogene of S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G26744.5	protein_coding		Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. It also binds to and inhibits the expression of ABI3. Mutants are defective in cold-regulated gene expression and ABA signaling druing seed germination.. Cold stress triggers protein degradation of nuclear GFPICE1  protein, and the RING finger protein HOS1 is required.  Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance. Together with ZOU, ICE1 determines primary seed dormancy depth independently of their joint role in endosperm development.ICE1 interacts with ABI5. Also members of the DELLA family, which repress ICE1 function.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G26744.6	protein_coding		Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. It also binds to and inhibits the expression of ABI3. Mutants are defective in cold-regulated gene expression and ABA signaling druing seed germination.. Cold stress triggers protein degradation of nuclear GFPICE1  protein, and the RING finger protein HOS1 is required.  Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance. Together with ZOU, ICE1 determines primary seed dormancy depth independently of their joint role in endosperm development.ICE1 interacts with ABI5. Also members of the DELLA family, which repress ICE1 function.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G20220.4	protein_coding			zinc knuckle (CCHC-type) family protein;(source:Araport11)
AT2G39440.2	protein_coding			ribonuclease H2 subunit C-like protein;(source:Araport11)
AT1G04743.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G09860;(source:Araport11)
AT5G19560.3	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	ROP uanine nucleotide exchange factor 10;(source:Araport11)
AT5G19560.2	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	ROP uanine nucleotide exchange factor 10;(source:Araport11)
AT5G19560.5	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	ROP uanine nucleotide exchange factor 10;(source:Araport11)
AT5G19560.4	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	ROP uanine nucleotide exchange factor 10;(source:Araport11)
AT1G04103.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G02310;(source:Araport11)
AT5G05085.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G06710.6	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G08615.1	antisense_rna			Natural antisense transcript overlaps with AT5G56660;(source:Araport11)
AT1G06710.4	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G06710.5	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G06710.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G06710.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G00280.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G39660.2	protein_coding		alanine:glyoxylate aminotransferase 2 homolog (AGT2). The mRNA is cell-to-cell mobile.	alanine:glyoxylate aminotransferase 2;(source:Araport11)
AT1G24420.2	protein_coding			HXXXD-type acyl-transferase family protein;(source:Araport11)
AT1G06710.9	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G11620.8	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G11620.9	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G01190.3	protein_coding		Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. Preferentially phosphorylates PtdIns4P. Expressed in flowers and inflorescence stems.	phosphatidylinositol phosphate kinase 10;(source:Araport11)
AT3G21755.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G21760;(source:Araport11)
AT1G07647.1	antisense_rna			Natural antisense transcript overlaps with AT1G50560;(source:Araport11)
AT5G16900.4	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G09775.1	long_noncoding_rna			None;(source:Araport11)
AT3G11470.6	protein_coding			4-phosphopantetheinyl transferase superfamily;(source:Araport11)
AT2G47210.3	protein_coding			myb-like transcription factor family protein;(source:Araport11)
AT1G77700.3	protein_coding			Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT1G77700.2	protein_coding			Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT3G11620.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G11620.6	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G11620.7	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G24380.4	protein_coding			dihydrofolate reductase;(source:Araport11)
AT3G04375.1	long_noncoding_rna			None;(source:Araport11)
AT1G68820.2	protein_coding		Putative C3HC4 zinc-finger ubiquitin E3 ligase, negative regulator in ABA and drought stress response.	Transmembrane Fragile-X-F-associated protein;(source:Araport11)
AT1G68820.3	protein_coding		Putative C3HC4 zinc-finger ubiquitin E3 ligase, negative regulator in ABA and drought stress response.	Transmembrane Fragile-X-F-associated protein;(source:Araport11)
AT1G68820.4	protein_coding		Putative C3HC4 zinc-finger ubiquitin E3 ligase, negative regulator in ABA and drought stress response.	Transmembrane Fragile-X-F-associated protein;(source:Araport11)
AT1G08057.1	long_noncoding_rna			None;(source:Araport11)
AT1G04990.3	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT4G30820.27	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30820.26	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30820.25	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30820.24	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30820.23	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30820.22	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30820.21	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT4G30820.20	protein_coding			cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein;(source:Araport11)
AT2G43010.5	protein_coding		Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized  bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.Involved in the regulation of response to nutrient levels.	phytochrome interacting factor 4;(source:Araport11)
AT2G43010.4	protein_coding		Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized  bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.Involved in the regulation of response to nutrient levels.	phytochrome interacting factor 4;(source:Araport11)
AT1G27630.2	protein_coding			cyclin T 1;(source:Araport11)
AT1G27630.3	protein_coding			cyclin T 1;(source:Araport11)
AT1G27630.4	protein_coding			cyclin T 1;(source:Araport11)
AT4G03655.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G00525;(source:Araport11)
AT2G43010.3	protein_coding		Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized  bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.Involved in the regulation of response to nutrient levels.	phytochrome interacting factor 4;(source:Araport11)
AT1G64540.2	protein_coding			F-box/FBD-like domains containing protein;(source:Araport11)
AT4G30250.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G63260.6	protein_coding		Member of TETRASPANIN family	tetraspanin10;(source:Araport11)
AT1G63260.5	protein_coding		Member of TETRASPANIN family	tetraspanin10;(source:Araport11)
AT1G63260.4	protein_coding		Member of TETRASPANIN family	tetraspanin10;(source:Araport11)
AT5G64340.uORF3	uORF			Derives_from AT5G64340;(source:Araport11)
AT5G64340.uORF2	uORF			Derives_from AT5G64340;(source:Araport11)
AT3G27473.3	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G63160.2	protein_coding		BTB and TAZ domain protein. Short-lived nuclear-cytoplasmic protein targeted for degradation by the 26S proteosome pathway. Acts redundantly with BT2 and BT3 during female gametophyte development.	BTB and TAZ domain protein 1;(source:Araport11)
AT5G63160.3	protein_coding		BTB and TAZ domain protein. Short-lived nuclear-cytoplasmic protein targeted for degradation by the 26S proteosome pathway. Acts redundantly with BT2 and BT3 during female gametophyte development.	BTB and TAZ domain protein 1;(source:Araport11)
AT1G05917.1	small_nucleolar_rna			None;(source:Araport11)
AT2G19590.2	protein_coding		encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase	ACC oxidase 1;(source:Araport11)
AT1G24735.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G02610.3	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT1G02610.2	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT4G38060.4	protein_coding			hypothetical protein;(source:Araport11)
AT2G34325.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G18470.4	protein_coding		Proline-rich extensin-like receptor kinase 4. Functions at an early stage of ABA signalling inhibiting primary root cell elongation by perturbing Ca2+ homeostasis.	roline-rich extensin-like receptor kinase 4;(source:Araport11)
AT5G06670.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G06670.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G06670.5	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G26920.3	protein_coding			FBD / Leucine Rich Repeat domains containing protein;(source:Araport11)
AT5G38200.3	protein_coding			Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT5G38200.2	protein_coding			Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT4G04005.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G01897;(source:Araport11)
AT1G03987.1	long_noncoding_rna			None;(source:Araport11)
AT4G06910.1	long_noncoding_rna			None;(source:Araport11)
AT4G04895.1	long_noncoding_rna			None;(source:Araport11)
AT5G39250.2	protein_coding			F-box family protein;(source:Araport11)
AT1G53655.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G07885.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G03085.10	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G20990.2	protein_coding		Involved in molybdenum cofactor (Moco) biosynthesis, inserting Mo into Molybdopterin. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1);(source:Araport11)
AT5G20990.3	protein_coding		Involved in molybdenum cofactor (Moco) biosynthesis, inserting Mo into Molybdopterin. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1);(source:Araport11)
AT1G73980.3	protein_coding		TTM1 is a triphosphate tunnel metalloenzyme that displays pyrophosphatase activity. It contains both a uridine kinase (UK) domain,CYTH domain, a coiled-coil domain and a transmembrane domain at the C-terminal Mutants show a delay in leaf senescence. Can functionally complement TTM1 and vise versa. (PMID:28733390)	Phosphoribulokinase / Uridine kinase family;(source:Araport11)
AT1G73980.2	protein_coding		TTM1 is a triphosphate tunnel metalloenzyme that displays pyrophosphatase activity. It contains both a uridine kinase (UK) domain,CYTH domain, a coiled-coil domain and a transmembrane domain at the C-terminal Mutants show a delay in leaf senescence. Can functionally complement TTM1 and vise versa. (PMID:28733390)	Phosphoribulokinase / Uridine kinase family;(source:Araport11)
AT1G10430.2	protein_coding		Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4]. It regulates the activation of ADF/cofilin, which, in turn, regulates actin cytoskeleton remodeling and is involved in phot2-mediated chloroplast avoidance movements.	protein phosphatase 2A-2;(source:Araport11)
AT4G16990.14	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT5G22420.4	protein_coding			fatty acid reductase 7;(source:Araport11)
AT1G06743.1	long_noncoding_rna			None;(source:Araport11)
AT3G52340.7	protein_coding		sucrose-phosphatase (SPP2)	sucrose-6F-phosphate phosphohydrolase 2;(source:Araport11)
AT4G34265.6	protein_coding			hypothetical protein;(source:Araport11)
AT3G48770.2	protein_coding			ATP/DNA binding protein;(source:Araport11)
AT1G59724.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G26470.3	protein_coding			Calcium-binding EF-hand family protein;(source:Araport11)
AT2G42835.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42830;(source:Araport11)
AT5G44520.2	protein_coding			NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT2G42835.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G42830;(source:Araport11)
AT1G69810.2	protein_coding		member of WRKY Transcription Factor; Group II-b	WRKY DNA-binding protein 36;(source:Araport11)
AT2G05635.2	protein_coding			DNA repair DEAD helicase RAD3/XP-D subfamily protein;(source:Araport11)
AT2G45250.3	protein_coding			integral membrane hemolysin-III-like protein;(source:Araport11)
AT3G55520.2	protein_coding			FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT1G17930.2	protein_coding			Aminotransferase-like, plant mobile domain family protein;(source:Araport11)
AT1G33330.2	protein_coding			Class I peptide chain release factor;(source:Araport11)
AT2G02350.2	protein_coding		encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber.	SKP1 interacting partner 3;(source:Araport11)
AT3G52340.4	protein_coding		sucrose-phosphatase (SPP2)	sucrose-6F-phosphate phosphohydrolase 2;(source:Araport11)
AT1G09880.4	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT1G09880.3	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT5G06800.3	protein_coding			myb-like HTH transcriptional regulator family protein;(source:Araport11)
AT4G24150.3	protein_coding		Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	growth-regulating factor 8;(source:Araport11)
AT4G24150.2	protein_coding		Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	growth-regulating factor 8;(source:Araport11)
AT2G07638.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G22870.4	protein_coding		One of two paralogs in Arabidopsis.Loss of both SCYL2B and SCYL2A results in severe growth defects.	kinase family with ARM repeat domain-containing protein;(source:Araport11)
AT2G08980.1	long_noncoding_rna			None;(source:Araport11)
AT1G22870.3	protein_coding		One of two paralogs in Arabidopsis.Loss of both SCYL2B and SCYL2A results in severe growth defects.	kinase family with ARM repeat domain-containing protein;(source:Araport11)
AT1G22870.2	protein_coding		One of two paralogs in Arabidopsis.Loss of both SCYL2B and SCYL2A results in severe growth defects.	kinase family with ARM repeat domain-containing protein;(source:Araport11)
AT4G24680.5	protein_coding		Encodes MOS1 (MODIFIER OF snc1).  MOS1 contains a BAT2 domain that is conserved in plants and animals. MOS1 associates with the promoter of SNC1 and regulates its expression.	modifier of snc1;(source:Araport11)
AT5G06960.3	protein_coding		Encodes a basic leucine zipper (B-ZIP) containing protein that interacts with NPR1 to promote expression of salicylic acid induced genes. Binds the ocs-element.	OCS-element binding factor 5;(source:Araport11)
AT3G17950.3	protein_coding			transmembrane protein;(source:Araport11)
AT4G01023.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G61220.3	protein_coding			LYR family of Fe/S cluster biogenesis protein;(source:Araport11)
AT3G07980.3	protein_coding		MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required  for pollen development but not essential.	mitogen-activated protein kinase kinase kinase 6;(source:Araport11)
AT1G09890.4	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT1G09890.5	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT4G05900.1	long_noncoding_rna			None;(source:Araport11)
AT5G07665.1	long_noncoding_rna			None;(source:Araport11)
AT1G09890.2	protein_coding			Rhamnogalacturonate lyase family protein;(source:Araport11)
AT3G52340.5	protein_coding		sucrose-phosphatase (SPP2)	sucrose-6F-phosphate phosphohydrolase 2;(source:Araport11)
AT1G75340.3	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT4G34265.4	protein_coding			hypothetical protein;(source:Araport11)
AT4G00230.2	protein_coding			xylem serine peptidase 1;(source:Araport11)
AT3G02510.3	protein_coding			Regulator of chromosome condensation (RCC1) family protein;(source:Araport11)
AT5G00375.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G01660.3	protein_coding			influenza virus NS1A-binding protein;(source:Araport11)
AT5G22875.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G33050.5	protein_coding			hypothetical protein;(source:Araport11)
AT4G01883.3	protein_coding			Polyketide cyclase / dehydrase and lipid transport protein;(source:Araport11)
AT1G19850.2	protein_coding		Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder.	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein;(source:Araport11)
AT3G07360.10	protein_coding		The AT3G07360.1 gene model encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. The proteins predicted to be encoded by the AT3G07360.2 and AT3G07360.3 gene models lack the U-box domain.  Together with AtARK2, it is required for auxin-mediated lateral root development under phosphate-starved conditions.PUB9 forms punctate structures and co-localizes with the autophagosomal marker ATG8 in the presence of ARK2. Plants lacking both AtPUB9 and ARK2 are defective in LR formation under phosphate starvation.Phosphate starvation leads to PUB9 localization on punctate sub-cellular structures in planta.	plant U-box 9;(source:Araport11)
AT1G07990.2	protein_coding			SIT4 phosphatase-associated family protein;(source:Araport11)
AT4G14210.3	protein_coding		Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.	phytoene desaturase 3;(source:Araport11)
AT4G11970.4	protein_coding			YTH family protein;(source:Araport11)
AT4G24680.3	protein_coding		Encodes MOS1 (MODIFIER OF snc1).  MOS1 contains a BAT2 domain that is conserved in plants and animals. MOS1 associates with the promoter of SNC1 and regulates its expression.	modifier of snc1;(source:Araport11)
AT3G04895.1	long_noncoding_rna			None;(source:Araport11)
AT1G68410.3	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT2G26810.7	protein_coding			Putative methyltransferase family protein;(source:Araport11)
AT5G05940.2	protein_coding		Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	ROP guanine nucleotide exchange factor 5;(source:Araport11)
AT1G68410.4	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT2G43500.11	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT2G43500.10	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT4G07405.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G25510;(source:Araport11)
AT4G07405.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G25510;(source:Araport11)
AT4G07405.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G25510;(source:Araport11)
AT1G09177.1	long_noncoding_rna			None;(source:Araport11)
AT5G04825.1	long_noncoding_rna			None;(source:Araport11)
AT4G19590.2	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G16040.4	protein_coding			phosphatidylinositol-glycan biosynthesis class F-like protein;(source:Araport11)
AT4G06135.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G13580;(source:Araport11)
AT1G05077.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G14370;(source:Araport11)
AT3G54065.1	protein_coding			LOW protein: ankyrin repeat protein;(source:Araport11)
AT5G42400.2	protein_coding		Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C.	SET domain protein 25;(source:Araport11)
AT5G42400.3	protein_coding		Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C.	SET domain protein 25;(source:Araport11)
AT5G65050.4	protein_coding		Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time.  Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.	AGAMOUS-like 31;(source:Araport11)
AT5G65050.5	protein_coding		Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time.  Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.	AGAMOUS-like 31;(source:Araport11)
AT5G42400.6	protein_coding		Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C.	SET domain protein 25;(source:Araport11)
AT5G42400.7	protein_coding		Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C.	SET domain protein 25;(source:Araport11)
AT5G42400.4	protein_coding		Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C.	SET domain protein 25;(source:Araport11)
AT5G42400.5	protein_coding		Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C.	SET domain protein 25;(source:Araport11)
AT2G10025.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G42400.8	protein_coding		Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C.	SET domain protein 25;(source:Araport11)
AT3G05465.1	long_noncoding_rna			None;(source:Araport11)
AT3G06060.2	protein_coding		Encodes one of the Arabidopsis proteins (At3g06060/TSC10A and At5g19200/TSC10B) with significant similarity to the yeast 3-ketodihydrosphinganine (3-KDS) reductase, Tsc10p.  Both TSC10A and TSC10B are bona fide 3-KDS reductase as shown by complementation experiment in yeast.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT1G06613.1	long_noncoding_rna			None;(source:Araport11)
AT3G02465.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G11570;(source:Araport11)
AT5G18420.4	protein_coding			CCR4-NOT transcription complex subunit;(source:Araport11)
AT5G06705.1	long_noncoding_rna			None;(source:Araport11)
AT1G16040.3	protein_coding			phosphatidylinositol-glycan biosynthesis class F-like protein;(source:Araport11)
AT4G25707.2	protein_coding		This gene encodes a small protein and has either evidence of transcription or purifying selection.	splicing factor 3A subunit;(source:Araport11)
AT2G41640.3	protein_coding			Glycosyltransferase family 61 protein;(source:Araport11)
AT4G27340.3	protein_coding			Met-10+ like family protein;(source:Araport11)
AT4G27340.2	protein_coding			Met-10+ like family protein;(source:Araport11)
AT2G27740.2	protein_coding			RAB6-interacting golgin (DUF662);(source:Araport11)
AT2G28210.2	protein_coding			alpha carbonic anhydrase 2;(source:Araport11)
AT5G09030.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G61990;(source:Araport11)
AT1G61210.3	protein_coding		DWA3 encodes a DWD(DDB1 binding WD40) protein. Invitro analyses suggest its involvement in the negative regulation  of ABA responses.One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G04815.1	long_noncoding_rna			None;(source:Araport11)
AT2G22650.3	protein_coding			FAD-dependent oxidoreductase family protein;(source:Araport11)
AT1G29005.1	protein_coding			reverse transcriptase zinc-binding protein;(source:Araport11)
AT2G34480.2	protein_coding		Encodes a nuclear localized member of the ribosomal L18ae/LX  protein family.  Loss of function mutations show reduced transmission through the gametophytes and embryo lethality.	Ribosomal protein L18ae/LX family protein;(source:Araport11)
AT1G05207.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G15820;(source:Araport11)
AT2G31900.4	protein_coding		Encodes an novel myosin isoform.	myosin-like protein XIF;(source:Araport11)
AT3G27884.3	other_rna		Has been identified as a translated small open reading frame by ribosome profiling.	None;(source:Araport11)
AT3G27884.2	other_rna		Has been identified as a translated small open reading frame by ribosome profiling.	None;(source:Araport11)
AT5G24270.5	protein_coding		encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B.  Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.	Calcium-binding EF-hand family protein;(source:Araport11)
AT3G03555.1	long_noncoding_rna			None;(source:Araport11)
AT1G72820.2	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT5G24270.3	protein_coding		encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B.  Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.	Calcium-binding EF-hand family protein;(source:Araport11)
AT2G07621.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G09240.1	long_noncoding_rna			None;(source:Araport11)
AT2G21455.1	protein_coding			SNF2 domain CLASSY-like protein;(source:Araport11)
AT3G26720.3	protein_coding			Glycosyl hydrolase family 38 protein;(source:Araport11)
AT5G19040.2	protein_coding		Encodes cytokinin synthase.	isopentenyltransferase 5;(source:Araport11)
AT5G19040.3	protein_coding		Encodes cytokinin synthase.	isopentenyltransferase 5;(source:Araport11)
AT2G44420.3	protein_coding			protein N-terminal asparagine amidohydrolase family protein;(source:Araport11)
AT2G44420.2	protein_coding			protein N-terminal asparagine amidohydrolase family protein;(source:Araport11)
AT5G53180.6	protein_coding		Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	polypyrimidine tract-binding protein 2;(source:Araport11)
AT3G54560.2	protein_coding		Encodes HTA11, a histone H2A protein. Loss of all H2A.Z (triple mutant with HTA8 and HTA9) results in a reduction in DNA methylation of transposons but not that of genes.  Loss of H2A.Z causes misregulation of many genes involved in the response to developmental and environmental cues, and that these genes tend to have high levels of gene-body H2A.Z.	histone H2A 11;(source:Araport11)
AT1G72490.2	protein_coding		DRO1 is a member of the IGT gene family and has a unknown function . It is expressed in roots and involved in leaf root architecture, specifically the orientation of lateral root angles. Involved in determining lateral root branch angle.	hypothetical protein;(source:Araport11)
AT4G03715.1	long_noncoding_rna			None;(source:Araport11)
AT1G65920.2	protein_coding			Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT3G55160.2	protein_coding		THADA is an orphan gene in Arabidopsis thaliana. It is the only DUF2428 domain containing protein in the genome.	thyroid adenoma-associated-like protein;(source:Araport11)
AT5G44290.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G05653.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G44290.7	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G44290.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G07535.1	long_noncoding_rna			None;(source:Araport11)
AT2G04575.1	long_noncoding_rna			None;(source:Araport11)
AT2G25220.6	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G25220.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G25220.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G25220.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G27493.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G26720.4	protein_coding			Glycosyl hydrolase family 38 protein;(source:Araport11)
AT1G27370.7	protein_coding		In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.  SPL10 also controls lamina shape during vegetative development.	squamosa promoter binding protein-like 10;(source:Araport11)
AT1G05983.1	long_noncoding_rna			None;(source:Araport11)
AT2G05375.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial;(source:Araport11)
AT1G08983.1	long_noncoding_rna			None;(source:Araport11)
AT3G04500.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G04500.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G33030.3	protein_coding			O-methyltransferase family protein;(source:Araport11)
AT1G64530.2	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT2G26150.3	protein_coding		member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay.	heat shock transcription factor A2;(source:Araport11)
AT1G52380.3	protein_coding			NUP50 (Nucleoporin 50 kDa) protein;(source:Araport11)
AT2G26150.4	protein_coding		member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay.	heat shock transcription factor A2;(source:Araport11)
AT1G05273.1	small_nuclear_rna			U2;(source:Araport11)
AT4G02735.1	protein_coding			F-box SKIP17-like protein;(source:Araport11)
AT1G09987.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G80850;(source:Araport11)
AT3G05185.1	other_rna			None;(source:Araport11)
AT2G45720.4	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT3G19440.2	protein_coding			Pseudouridine synthase family protein;(source:Araport11)
AT1G31180.2	protein_coding		The AtIMD3 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.	isopropylmalate dehydrogenase 3;(source:Araport11)
AT1G76940.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G07437.1	long_noncoding_rna			None;(source:Araport11)
AT4G32350.2	protein_coding			Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT4G32350.3	protein_coding			Regulator of Vps4 activity in the MVB pathway protein;(source:Araport11)
AT1G05297.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17140;(source:Araport11)
AT1G09383.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G73440;(source:Araport11)
AT1G04310.2	protein_coding		encodes an ethylene receptor related to bacterial two-component histidine kinases.	ethylene response sensor 2;(source:Araport11)
AT3G61410.3	protein_coding			U-box kinase family protein;(source:Araport11)
AT4G25980.2	protein_coding			peroxidase superfamily protein;(source:Araport11)
AT4G00975.2	antisense_rna			Natural antisense transcript overlaps with AT4G00980;(source:Araport11)
AT4G37680.3	protein_coding		heptahelical transmembrane protein HHP4	heptahelical protein 4;(source:Araport11)
AT2G30170.7	protein_coding		Encodes a chloroplast PP2C phosphatase that is required for efficient dephosphorylation of PSII proteins and involved in light acclimation.	Protein phosphatase 2C family protein;(source:Araport11)
AT5G63620.3	protein_coding		Encodes an oxidoreductase involved in transducing the perception of E-2-hexenal, which changes the redox status of the mitochondria.	GroES-like zinc-binding alcohol dehydrogenase family protein;(source:Araport11)
AT4G37680.4	protein_coding		heptahelical transmembrane protein HHP4	heptahelical protein 4;(source:Araport11)
AT1G70490.6	protein_coding		A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	Ras-related small GTP-binding family protein;(source:Araport11)
AT1G70490.7	protein_coding		A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	Ras-related small GTP-binding family protein;(source:Araport11)
AT2G08550.1	long_noncoding_rna			None;(source:Araport11)
AT2G40340.2	protein_coding		Encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT5G04375.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G27280;(source:Araport11)
AT1G16590.2	protein_coding		putative translesion synthesis polymerase zeta subunit, homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).	DNA-binding HORMA family protein;(source:Araport11)
AT5G62840.2	protein_coding			Phosphoglycerate mutase family protein;(source:Araport11)
AT4G03815.1	long_noncoding_rna			None;(source:Araport11)
AT5G02495.1	long_noncoding_rna			None;(source:Araport11)
AT5G10330.6	protein_coding		Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.	histidinol phosphate aminotransferase 1;(source:Araport11)
AT3G04005.1	long_noncoding_rna			None;(source:Araport11)
AT1G04357.1	long_noncoding_rna			None;(source:Araport11)
AT4G08690.3	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT2G08090.1	long_noncoding_rna			None;(source:Araport11)
AT2G07375.1	long_noncoding_rna			None;(source:Araport11)
AT1G29700.2	protein_coding			Metallo-hydrolase/oxidoreductase superfamily protein;(source:Araport11)
AT1G09693.1	long_noncoding_rna			None;(source:Araport11)
AT3G04725.1	long_noncoding_rna			None;(source:Araport11)
AT3G04025.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G20740;(source:Araport11)
AT5G00410.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G67792.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G67790;(source:Araport11)
AT4G32670.2	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G51585.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G78530.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G09997.1	long_noncoding_rna			None;(source:Araport11)
AT5G01455.1	long_noncoding_rna			None;(source:Araport11)
AT1G05287.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17070;(source:Araport11)
AT5G46150.4	protein_coding			LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein;(source:Araport11)
AT1G05560.2	protein_coding		A UDP-glucose transferase localized in the phragmoplast.  It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose.	UDP-glucosyltransferase 75B1;(source:Araport11)
AT1G73290.3	protein_coding			serine carboxypeptidase-like 5;(source:Araport11)
AT2G47170.2	protein_coding		Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.The mRNA is cell-to-cell mobile.	Ras-related small GTP-binding family protein;(source:Araport11)
AT2G47170.3	protein_coding		Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.The mRNA is cell-to-cell mobile.	Ras-related small GTP-binding family protein;(source:Araport11)
AT4G01480.2	protein_coding		Encodes a protein that might have inorganic pyrophosphatase activity.	pyrophosphorylase 5;(source:Araport11)
AT5G15550.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G26360.2	protein_coding			Ribosomal protein S21 family protein;(source:Araport11)
AT3G61160.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G14750.3	protein_coding		Encodes a meiotic cyclin-like protein, distinct from all other known Arabidopsis cyclins.  It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome.	Cyclin family protein;(source:Araport11)
AT5G06405.1	long_noncoding_rna			None;(source:Araport11)
AT2G08360.1	long_noncoding_rna			None;(source:Araport11)
AT4G05925.1	miRNA_primary_transcript			microRNA ath-MIR8172 precursor;(source:Araport11)
AT1G08247.1	long_noncoding_rna			None;(source:Araport11)
AT1G20570.2	protein_coding			Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT3G07985.1	long_noncoding_rna			None;(source:Araport11)
AT5G11950.3	protein_coding		Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.	Putative lysine decarboxylase family protein;(source:Araport11)
AT5G11950.4	protein_coding		Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.	Putative lysine decarboxylase family protein;(source:Araport11)
AT3G46735.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G09035.1	antisense_rna			Natural antisense transcript overlaps with AT2G39340;(source:Araport11)
AT1G12400.3	protein_coding			Nucleotide excision repair, TFIIH, subunit TTDA;(source:Araport11)
AT4G02945.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G02170.5	protein_coding			Remorin family protein;(source:Araport11)
AT2G02170.4	protein_coding			Remorin family protein;(source:Araport11)
AT3G47160.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G07527.1	long_noncoding_rna			None;(source:Araport11)
AT2G02170.3	protein_coding			Remorin family protein;(source:Araport11)
AT3G08565.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, receptacle, dark-grown seedling, light-grown seedling, flower, pollen, aerial;(source:Araport11)
AT3G08285.1	miRNA_primary_transcript			microRNA ath-MIR5633 precursor;(source:Araport11)
AT1G04347.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G05205;(source:Araport11)
AT4G04205.1	small_nucleolar_rna			None;(source:Araport11)
AT2G24560.2	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase family protein;(source:Araport11)
AT1G06080.2	protein_coding		Encodes a protein homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature.  It is involved in the desaturation of VLCFAs to make monounsaturated VLCFAs.	delta 9 desaturase 1;(source:Araport11)
AT3G27025.3	protein_coding		Encodes a member of the LAZY gene family that is expressed in the shoot apex.	hypothetical protein;(source:Araport11)
AT4G23990.2	protein_coding		encodes a protein similar to cellulose synthase	cellulose synthase like G3;(source:Araport11)
AT1G20570.4	protein_coding			Spc97 / Spc98 family of spindle pole body (SBP) component;(source:Araport11)
AT3G54350.5	protein_coding			Forkhead-associated (FHA) domain-containing protein;(source:Araport11)
AT1G09113.1	long_noncoding_rna			None;(source:Araport11)
AT5G40450.2	protein_coding		Encodes a member of a plant gene family, APK_ORTHOMCL5144,of unknown function. RBB1 is localized to the cytosol and involved in vacuolar biogenesis and organization. RBB1 mutants have increased number of vacuolar bulbs and fewer trans-vacuolar strands.	A-kinase anchor-like protein;(source:Araport11)
AT4G19560.2	protein_coding			Cyclin family protein;(source:Araport11)
AT3G54970.4	protein_coding			D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein;(source:Araport11)
AT2G36530.2	protein_coding		Involved in light-dependent cold tolerance and encodes an enolase. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	Enolase;(source:Araport11)
AT3G18100.4	protein_coding		Member of the R2R3 transcription factor gene family.	myb domain protein 4r1;(source:Araport11)
AT2G14755.1	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT2G28990.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G30730.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G05795.1	long_noncoding_rna			None;(source:Araport11)
AT5G02655.1	small_nucleolar_rna			None;(source:Araport11)
AT4G19020.2	protein_coding		Encodes a plant DNA methyltransferase that methylates mainly cytosines in CHH (H = any base but G) contexts.  It is involved in heat tolerance.	chromomethylase 2;(source:Araport11)
AT2G08745.1	antisense_rna			Natural antisense transcript overlaps with AT2G35658;(source:Araport11)
AT2G36670.3	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT3G07135.1	long_noncoding_rna			None;(source:Araport11)
AT4G04920.3	protein_coding		Encodes a nuclear targeted protein that plays a role in the CBF pathway -downstream of CBF translation. Mutants have impaired cold responses, reduced levels of cold induced RNA transcripts, are sensitive to osmotic stress. Required for expression of CBF-controlled cold-upregulated genes and some, but not all, other cold up-regulated genes. Required for recruitment of the Mediator complex and RNA polymerase II to CBF-controlled cold-responsive genes. Required for expression of some dark-upregulated genes. SFR6 was isolated as a suppressor of cell wall defects in cob6 mutant background.	sensitive to freezing 6;(source:Araport11)
AT1G07520.2	protein_coding			GRAS family transcription factor;(source:Araport11)
AT1G04207.1	long_noncoding_rna			None;(source:Araport11)
AT1G79250.4	protein_coding			AGC kinase 1.7;(source:Araport11)
AT1G54680.4	protein_coding			translation initiation factor 3 subunit I;(source:Araport11)
AT4G39150.3	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G05960.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT1G52080.2	protein_coding			actin binding protein family;(source:Araport11)
AT5G00465.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G18040.2	protein_coding			target of trans acting-siR480/255 protein;(source:Araport11)
AT2G24320.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT1G09207.1	long_noncoding_rna			None;(source:Araport11)
AT1G06043.1	long_noncoding_rna			None;(source:Araport11)
AT4G09145.1	long_noncoding_rna			None;(source:Araport11)
AT3G58760.5	protein_coding			Integrin-linked protein kinase family;(source:Araport11)
AT1G08257.1	long_noncoding_rna			None;(source:Araport11)
AT3G28960.5	protein_coding			Transmembrane amino acid transporter family protein;(source:Araport11)
AT3G28960.4	protein_coding			Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G60130.2	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G28960.2	protein_coding			Transmembrane amino acid transporter family protein;(source:Araport11)
AT2G05465.1	long_noncoding_rna			None;(source:Araport11)
AT4G02550.5	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT2G30150.2	protein_coding			UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT5G24280.2	protein_coding		Encodes GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein.  Involved in somatic homologous recombination.	gamma-irradiation and mitomycin c induced 1;(source:Araport11)
AT5G24280.3	protein_coding		Encodes GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein.  Involved in somatic homologous recombination.	gamma-irradiation and mitomycin c induced 1;(source:Araport11)
AT3G02280.2	protein_coding			Flavodoxin family protein;(source:Araport11)
AT5G01555.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G08550;(source:Araport11)
AT2G30945.2	other_rna			None;(source:Araport11)
AT2G30945.3	other_rna			None;(source:Araport11)
AT5G17810.3	protein_coding		Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Together with WOX11, WOX12 is involved in de novo root organogenesis.	WUSCHEL related homeobox 12;(source:Araport11)
AT1G52380.2	protein_coding			NUP50 (Nucleoporin 50 kDa) protein;(source:Araport11)
AT5G09160.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G63490;(source:Araport11)
AT4G07645.1	long_noncoding_rna			None;(source:Araport11)
AT1G73990.2	protein_coding		Encodes a putative protease SppA (SppA).	signal peptide peptidase;(source:Araport11)
AT3G05045.1	long_noncoding_rna			None;(source:Araport11)
AT5G66595.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G11950.3	protein_coding			Transcription factor jumonji (jmjC) domain-containing protein;(source:Araport11)
AT2G08465.1	long_noncoding_rna			None;(source:Araport11)
AT3G44190.2	protein_coding			FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT1G77850.2	protein_coding		Encodes a transcriptional regulator that directly binds to the promoter of MYB108 and plays a crucial role in anther dehiscence, pollen wall pattern formation, tapetum development, and auxin signal transduction in anthers. It is post-transcriptionally regulated by miR160 and regulates early auxin response genes.	auxin response factor 17;(source:Araport11)
AT5G57100.4	protein_coding			Nucleotide/sugar transporter family protein;(source:Araport11)
AT3G00940.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G57100.3	protein_coding			Nucleotide/sugar transporter family protein;(source:Araport11)
AT5G57100.2	protein_coding			Nucleotide/sugar transporter family protein;(source:Araport11)
AT3G63340.3	protein_coding			kinase superfamily protein;(source:Araport11)
AT2G04175.1	long_noncoding_rna			None;(source:Araport11)
AT2G38060.2	protein_coding		Encodes an inorganic phosphate transporter (PHT4;2).	phosphate transporter 4;(source:Araport11)
AT3G44763.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G63340.4	protein_coding			kinase superfamily protein;(source:Araport11)
AT3G06785.1	long_noncoding_rna			None;(source:Araport11)
AT3G05765.1	long_noncoding_rna			None;(source:Araport11)
AT1G40090.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G03110.3	protein_coding			putative RNA-binding protein;(source:Araport11)
AT3G08505.3	protein_coding			zinc finger (CCCH-type/C3HC4-type RING finger) family protein;(source:Araport11)
AT5G44990.4	protein_coding			Glutathione S-transferase family protein;(source:Araport11)
AT5G59670.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G42725.1	protein_coding			transcription factor;(source:Araport11)
AT2G44830.3	protein_coding		AGCVIII kinase involved in the pulse-induced first positive phototropism. Plasma-membrane-associated element of a molecular rheostat that modulates auxin flux through developing protophloem sieve elements (PPSEs) while interacting with BRX, thereby timing PPSE differentiation. Activates PIN-mediated auxin efflux.	Protein kinase superfamily protein;(source:Araport11)
AT3G00790.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G04335.1	long_noncoding_rna			None;(source:Araport11)
AT2G46970.2	protein_coding		encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.	phytochrome interacting factor 3-like 1;(source:Araport11)
AT3G55890.3	protein_coding			Yippee family putative zinc-binding protein;(source:Araport11)
AT3G55890.2	protein_coding			Yippee family putative zinc-binding protein;(source:Araport11)
AT5G57210.2	protein_coding			Ypt/Rab-GAP domain of gyp1p superfamily protein;(source:Araport11)
AT1G06297.1	long_noncoding_rna			None;(source:Araport11)
AT1G37150.6	protein_coding		Although HCS2 is predicted to encode a biotin protein ligase / holocarboxylase synthetase (HCS), hcs2 mutants do not show a decrease in HCS activity. A dual-targeted HCS1 (At2g25710) might account for the HCS activity observed in multiple subcellular compartments in Arabidopsis.	holocarboxylase synthetase 2;(source:Araport11)
AT1G37150.7	protein_coding		Although HCS2 is predicted to encode a biotin protein ligase / holocarboxylase synthetase (HCS), hcs2 mutants do not show a decrease in HCS activity. A dual-targeted HCS1 (At2g25710) might account for the HCS activity observed in multiple subcellular compartments in Arabidopsis.	holocarboxylase synthetase 2;(source:Araport11)
AT3G14010.5	protein_coding		hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2.	CTC-interacting domain 4;(source:Araport11)
AT2G01430.2	protein_coding		ATHB17 is a member of the HD-Zip transcription factor family. It is expressed most strongly in roots at different stages of development and induced by ABA, paraquat, drought, and NaCl treatments. Loss of function mutants are more sensitive to salt and drought stress.The protein is nuclear localized and has been shown to bind to the promoter of SIG5 and other genes.	homeobox-leucine zipper protein 17;(source:Araport11)
AT5G46880.2	protein_coding			homeobox-7;(source:Araport11)
AT5G46880.3	protein_coding			homeobox-7;(source:Araport11)
AT1G12370.3	protein_coding		encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The  uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele	photolyase 1;(source:Araport11)
AT1G37150.8	protein_coding		Although HCS2 is predicted to encode a biotin protein ligase / holocarboxylase synthetase (HCS), hcs2 mutants do not show a decrease in HCS activity. A dual-targeted HCS1 (At2g25710) might account for the HCS activity observed in multiple subcellular compartments in Arabidopsis.	holocarboxylase synthetase 2;(source:Araport11)
AT1G37150.9	protein_coding		Although HCS2 is predicted to encode a biotin protein ligase / holocarboxylase synthetase (HCS), hcs2 mutants do not show a decrease in HCS activity. A dual-targeted HCS1 (At2g25710) might account for the HCS activity observed in multiple subcellular compartments in Arabidopsis.	holocarboxylase synthetase 2;(source:Araport11)
AT2G28260.2	protein_coding		member of Cyclic nucleotide gated channel family	cyclic nucleotide-gated channel 15;(source:Araport11)
AT3G57050.5	protein_coding		Encodes cystathionine beta-lyase, the second enzyme in the methionine biosynthetic pathway. Mutants show defects in root development, reduced methylation and maintenance of the quiescent center.	cystathionine beta-lyase;(source:Araport11)
AT3G57050.4	protein_coding		Encodes cystathionine beta-lyase, the second enzyme in the methionine biosynthetic pathway. Mutants show defects in root development, reduced methylation and maintenance of the quiescent center.	cystathionine beta-lyase;(source:Araport11)
AT3G08035.1	long_noncoding_rna			None;(source:Araport11)
AT5G07185.1	long_noncoding_rna			None;(source:Araport11)
AT1G40086.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G06510.4	protein_coding			nuclear factor Y, subunit A10;(source:Araport11)
AT5G06510.5	protein_coding			nuclear factor Y, subunit A10;(source:Araport11)
AT5G06510.6	protein_coding			nuclear factor Y, subunit A10;(source:Araport11)
AT1G65735.1	protein_coding			ascorbic acid mannose pathway regulator;(source:Araport11)
AT1G71200.2	protein_coding		bHLH160 transcription factor. Induced by copper deficiency and seems to mediate copper uptake along with SPL7.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G71200.3	protein_coding		bHLH160 transcription factor. Induced by copper deficiency and seems to mediate copper uptake along with SPL7.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G27460.3	protein_coding		encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.The mRNA is cell-to-cell mobile.	no pollen germination related 1;(source:Araport11)
AT1G27460.2	protein_coding		encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.The mRNA is cell-to-cell mobile.	no pollen germination related 1;(source:Araport11)
AT3G25980.3	protein_coding		Encodes MAD2 (MITOTIC ARREST-DEFICIENT 2). May have the spindle assembly checkpoint protein functions conserved from yeast to humans.	DNA-binding HORMA family protein;(source:Araport11)
AT1G52570.3	protein_coding		member of C2-PLD subfamily	phospholipase D alpha 2;(source:Araport11)
AT1G52570.2	protein_coding		member of C2-PLD subfamily	phospholipase D alpha 2;(source:Araport11)
AT3G25980.4	protein_coding		Encodes MAD2 (MITOTIC ARREST-DEFICIENT 2). May have the spindle assembly checkpoint protein functions conserved from yeast to humans.	DNA-binding HORMA family protein;(source:Araport11)
AT5G59270.2	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT1G29420.2	protein_coding			SAUR-like auxin-responsive protein family;(source:Araport11)
AT3G23490.2	protein_coding		Encodes a cyanase that catalyzes the bicarbonate-dependent breakdown of cyanate to ammonia and bicarbonate. CYN forms a hexadecamer and is believed to be a cytosolic protein. Long-term exposure to NaCl increases CYN transcript levels. It is also expressed at higher levels in flowers relative to stems, roots, and seedlings.	cyanase;(source:Araport11)
AT3G23490.3	protein_coding		Encodes a cyanase that catalyzes the bicarbonate-dependent breakdown of cyanate to ammonia and bicarbonate. CYN forms a hexadecamer and is believed to be a cytosolic protein. Long-term exposure to NaCl increases CYN transcript levels. It is also expressed at higher levels in flowers relative to stems, roots, and seedlings.	cyanase;(source:Araport11)
AT5G02910.3	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT5G10300.2	protein_coding		Encodes a protein with R-selective hydroxynitrile lyase activity. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	methyl esterase 5;(source:Araport11)
AT3G03495.1	long_noncoding_rna			None;(source:Araport11)
AT1G16750.2	protein_coding			GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547);(source:Araport11)
AT3G14670.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G07975.1	other_rna			None;(source:Araport11)
AT1G80660.4	protein_coding			H[+]-ATPase 9;(source:Araport11)
AT3G24463.1	protein_coding			nuclear transport factor 2 family protein;(source:Araport11)
AT5G57270.4	protein_coding			Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
AT5G37020.3	protein_coding		Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Expression of ARF8 is controlled by miR167.	auxin response factor 8;(source:Araport11)
AT1G05417.1	small_nucleolar_rna			None;(source:Araport11)
AT4G05885.1	long_noncoding_rna			None;(source:Araport11)
AT1G80660.3	protein_coding			H[+]-ATPase 9;(source:Araport11)
AT1G06027.1	long_noncoding_rna			None;(source:Araport11)
AT5G06005.1	long_noncoding_rna			None;(source:Araport11)
AT2G40790.2	protein_coding		Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.  It contains a large N-terminal extension with respect to the dicysteinic thioredoxins that is enriched with 8 cysteines and positively charged residues.	C-terminal cysteine residue is changed to a serine 2;(source:Araport11)
AT5G59960.3	protein_coding			K-stimulated pyrophosphate-energized sodium pump protein;(source:Araport11)
AT5G59960.2	protein_coding			K-stimulated pyrophosphate-energized sodium pump protein;(source:Araport11)
AT1G04193.1	small_nucleolar_rna			None;(source:Araport11)
AT5G03770.2	protein_coding		Encodes a putative KDO (3-deoxy-D-manno-octulosonate) transferase	KDO transferase A;(source:Araport11)
AT4G13260.3	protein_coding		Encodes YUC2. Catalyzes conversion of IPA (indole-3-pyruvic acid) to IAA (indole-3-acetic acid) in auxin biosynthesis pathway.	Flavin-binding monooxygenase family protein;(source:Araport11)
AT2G27480.2	protein_coding			Calcium-binding EF-hand family protein;(source:Araport11)
AT2G05355.1	pre_trna			pre-tRNA tRNA-Tyr (anticodon: GTA);(source:Araport11, TAIR10)
AT4G39860.4	protein_coding			hematological/neurological-like protein;(source:Araport11)
AT5G06025.1	long_noncoding_rna			None;(source:Araport11)
AT5G46825.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G04475.1	long_noncoding_rna			None;(source:Araport11)
AT1G75295.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G75290 and AT1G75300;(source:Araport11)
AT4G11830.3	protein_coding		Encodes one of three phospholipase D enzymes of the gamma class.	phospholipase D gamma 2;(source:Araport11)
AT2G40770.3	protein_coding			RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein;(source:Araport11)
AT2G40770.2	protein_coding			RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein;(source:Araport11)
AT4G25880.4	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.	pumilio 6;(source:Araport11)
AT4G25880.5	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts.	pumilio 6;(source:Araport11)
AT4G11880.3	protein_coding		AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.The mRNA is cell-to-cell mobile.	AGAMOUS-like 14;(source:Araport11)
AT1G05385.2	protein_coding		Encodes a Psb27 homolog involved in photosystem II biogenesis.	photosystem II 11 kDa protein-like protein;(source:Araport11)
AT2G38890.3	protein_coding			hypothetical protein;(source:Araport11)
AT3G23180.2	protein_coding			HR-like lesion-inducing protein-like protein;(source:Araport11)
AT2G04055.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower;(source:Araport11)
AT5G42740.3	protein_coding			Sugar isomerase (SIS) family protein;(source:Araport11)
AT5G42740.2	protein_coding			Sugar isomerase (SIS) family protein;(source:Araport11)
AT5G55260.2	protein_coding		Encodes a protein with similarity to the catalytic subunit of the mammalian PPX protein phospatase.	protein phosphatase X 2;(source:Araport11)
AT5G38940.2	protein_coding			RmlC-like cupins superfamily protein;(source:Araport11)
AT3G27390.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G10210.3	protein_coding		Encodes ATMPK1.	mitogen-activated protein kinase 1;(source:Araport11)
AT5G61120.3	protein_coding			zinc ion-binding protein;(source:Araport11)
AT3G56160.2	protein_coding			Sodium Bile acid symporter family;(source:Araport11)
AT3G56160.3	protein_coding			Sodium Bile acid symporter family;(source:Araport11)
AT3G13030.5	protein_coding			hAT transposon superfamily protein;(source:Araport11)
AT3G13030.4	protein_coding			hAT transposon superfamily protein;(source:Araport11)
AT4G11880.2	protein_coding		AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.The mRNA is cell-to-cell mobile.	AGAMOUS-like 14;(source:Araport11)
AT3G56160.4	protein_coding			Sodium Bile acid symporter family;(source:Araport11)
AT3G56160.5	protein_coding			Sodium Bile acid symporter family;(source:Araport11)
AT1G30140.2	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT2G44850.3	protein_coding			hypothetical protein;(source:Araport11)
AT4G22770.2	protein_coding			AT hook motif DNA-binding family protein;(source:Araport11)
AT4G02815.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G63760.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G66970.3	protein_coding		Encodes a member of the glycerophosphodiester phosphodiesterase like (GDPD-like) family.	SHV3-like 2;(source:Araport11)
AT5G02665.1	small_nucleolar_rna			None;(source:Araport11)
AT5G63760.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G22730.2	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT3G13050.4	protein_coding		Encodes a plant nicotinate transporter than can also transport trigonelline (N-methylnicotinate).	Major facilitator superfamily protein;(source:Araport11)
AT3G56140.2	protein_coding			DUF399 family protein, putative (DUF399 and DUF3411);(source:Araport11)
AT1G04183.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G03410;(source:Araport11)
AT5G06535.1	long_noncoding_rna			None;(source:Araport11)
AT3G13050.3	protein_coding		Encodes a plant nicotinate transporter than can also transport trigonelline (N-methylnicotinate).	Major facilitator superfamily protein;(source:Araport11)
AT3G13050.2	protein_coding		Encodes a plant nicotinate transporter than can also transport trigonelline (N-methylnicotinate).	Major facilitator superfamily protein;(source:Araport11)
AT1G58220.2	protein_coding		Plays an essential role in organ development by regulating cell expansion either directly by affecting cell wall architecture and/or cytoplasmic growth or indirectly through the ethylene and/or ABA signaling pathways.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G00450.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G06140.1	long_noncoding_rna			None;(source:Araport11)
AT3G62695.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G10050.2	protein_coding			esterase/lipase/thioesterase family protein;(source:Araport11)
AT1G67480.3	protein_coding			Galactose oxidase/kelch repeat superfamily protein;(source:Araport11)
AT3G00470.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G00470.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09785.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G56300.2	protein_coding			Cysteinyl-tRNA synthetase, class Ia family protein;(source:Araport11)
AT5G45276.3	pseudogene			pseudogene of Frigida-like protein;(source:Araport11)
AT3G06015.1	long_noncoding_rna			None;(source:Araport11)
AT4G07975.1	antisense_rna			Natural antisense transcript overlaps with AT4G28080;(source:Araport11)
AT2G09630.1	long_noncoding_rna			None;(source:Araport11)
AT1G08107.1	small_nucleolar_rna			None;(source:Araport11)
AT3G49970.2	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G09097.1	long_noncoding_rna			None;(source:Araport11)
AT5G62165.6	protein_coding		Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT5G62165.7	protein_coding		Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.	AGAMOUS-like 42;(source:Araport11)
AT4G00420.5	protein_coding			Double-stranded RNA-binding domain (DsRBD)-containing protein;(source:Araport11)
AT3G17360.3	protein_coding		PHRAGMOPLAST ORIENTING KINESIN 1 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK1 constructs were more limited than those for POK2; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls.	phragmoplast orienting kinesin 1;(source:Araport11)
AT1G63810.2	protein_coding			nucleolar protein;(source:Araport11)
AT2G18630.2	protein_coding			transmembrane protein, putative (DUF677);(source:Araport11)
AT2G09765.1	long_noncoding_rna			None;(source:Araport11)
AT3G46845.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G12770.2	protein_coding		Encodes a DEAD-box RNA helicase that  localizes to mitochondria and is essential for regulating cell-to-cell transport via plasmodesmata.The mRNA is cell-to-cell mobile.	P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G46070.3	protein_coding		Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants.	mitogen-activated protein kinase 12;(source:Araport11)
AT5G01535.1	long_noncoding_rna			None;(source:Araport11)
AT1G12290.3	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G08003.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G54830;(source:Araport11)
AT1G17350.3	protein_coding			NADH:ubiquinone oxidoreductase intermediate-associated protein 30;(source:Araport11)
AT1G17350.4	protein_coding			NADH:ubiquinone oxidoreductase intermediate-associated protein 30;(source:Araport11)
AT1G17350.5	protein_coding			NADH:ubiquinone oxidoreductase intermediate-associated protein 30;(source:Araport11)
AT5G54870.2	protein_coding			inositol-1,4,5-trisphosphate 5-phosphatase;(source:Araport11)
AT3G16230.10	protein_coding			Putative eukaryotic LigT;(source:Araport11)
AT3G16230.11	protein_coding			Putative eukaryotic LigT;(source:Araport11)
AT1G10870.2	protein_coding		A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3.	ARF-GAP domain 4;(source:Araport11)
AT3G16230.13	protein_coding			Putative eukaryotic LigT;(source:Araport11)
AT5G01305.1	protein_coding		Encodes a bHLH protein that modulates axillary meristem formation in conjunction with RAX1 and LAS.	transcription factor bHLH140-like protein;(source:Araport11)
AT5G05325.1	long_noncoding_rna			None;(source:Araport11)
AT5G50690.2	protein_coding		Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include:   At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463).  Two copies of HSD1 and HSD4 exist due to a gene duplication event.  In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.	hydroxysteroid dehydrogenase 7;(source:Araport11)
AT3G02890.3	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G02890.2	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT4G21400.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 28;(source:Araport11)
AT4G21400.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 28;(source:Araport11)
AT4G21400.4	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 28;(source:Araport11)
AT1G03160.4	protein_coding		A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.	FZO-like protein;(source:Araport11)
AT4G21400.6	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 28;(source:Araport11)
AT3G02890.4	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT4G21400.8	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 28;(source:Araport11)
AT3G13437.2	protein_coding			transmembrane protein;(source:Araport11)
AT4G07465.1	long_noncoding_rna			None;(source:Araport11)
AT5G08965.1	long_noncoding_rna			None;(source:Araport11)
AT5G46190.4	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT3G00410.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G32690.5	protein_coding		Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.	glycine-rich protein 23;(source:Araport11)
AT3G02985.1	long_noncoding_rna			None;(source:Araport11)
AT5G46190.2	protein_coding			RNA-binding KH domain-containing protein;(source:Araport11)
AT1G08077.1	long_noncoding_rna			None;(source:Araport11)
AT5G20060.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G04690.6	protein_coding			Pyridoxamine 5-phosphate oxidase family protein;(source:Araport11)
AT5G37590.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G04310.2	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT2G36250.4	protein_coding		Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis.  It is involved in chloroplast division.	Tubulin/FtsZ family protein;(source:Araport11)
AT4G03585.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G00360;(source:Araport11)
AT1G76970.2	protein_coding			Target of Myb protein 1;(source:Araport11)
AT4G07445.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G09385.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G36770;(source:Araport11)
AT5G04785.1	long_noncoding_rna			None;(source:Araport11)
AT5G51870.4	protein_coding		Encodes a MADS-box transcription factor involved in floral transition.	AGAMOUS-like 71;(source:Araport11)
AT1G76970.4	protein_coding			Target of Myb protein 1;(source:Araport11)
AT4G01510.2	protein_coding			Arv1-like protein;(source:Araport11)
AT1G48490.4	protein_coding		Protein kinase which together with IREH1 plays an important role in controlling root skewing and maintaining the microtubule network.	Protein kinase superfamily protein;(source:Araport11)
AT4G01510.4	protein_coding			Arv1-like protein;(source:Araport11)
AT4G01510.5	protein_coding			Arv1-like protein;(source:Araport11)
AT4G01510.6	protein_coding			Arv1-like protein;(source:Araport11)
AT4G01510.7	protein_coding			Arv1-like protein;(source:Araport11)
AT4G01510.8	protein_coding			Arv1-like protein;(source:Araport11)
AT4G01510.9	protein_coding			Arv1-like protein;(source:Araport11)
AT1G08680.5	protein_coding		A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.	ARF GAP-like zinc finger-containing protein ZIGA4;(source:Araport11)
AT4G11880.4	protein_coding		AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.The mRNA is cell-to-cell mobile.	AGAMOUS-like 14;(source:Araport11)
AT5G40510.2	protein_coding			Sucrase/ferredoxin-like family protein;(source:Araport11)
AT4G03495.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G54217.8	protein_coding			Ribosomal protein L18ae family;(source:Araport11)
AT4G37710.2	protein_coding			VQ motif-containing protein;(source:Araport11)
AT5G61730.2	protein_coding		Encodes an ER-localized ABC transporter with a role in the supply of fatty acid substrates for TAG biosynthesis at the ER during the seed-filling stage.	ABC2 homolog 11;(source:Araport11)
AT5G55100.11	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G55100.10	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;(source:Araport11)
AT5G08080.4	protein_coding		member of SYP13 Gene Family	syntaxin of plants 132;(source:Araport11)
AT1G54217.6	protein_coding			Ribosomal protein L18ae family;(source:Araport11)
AT1G54217.5	protein_coding			Ribosomal protein L18ae family;(source:Araport11)
AT1G54217.4	protein_coding			Ribosomal protein L18ae family;(source:Araport11)
AT1G20065.3	protein_coding			DNA-directed RNA polymerase I subunit RPA12-like protein;(source:Araport11)
AT1G79840.3	protein_coding		Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development.  Directly regulated by WER.	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein;(source:Araport11)
AT1G20065.5	protein_coding			DNA-directed RNA polymerase I subunit RPA12-like protein;(source:Araport11)
AT5G05505.1	miRNA_primary_transcript			microRNA ath-MIR5645f precursor;(source:Araport11)
AT4G13040.8	protein_coding		Encodes a member of the AP2/EREBP transcription factor family that has only one AP2 domain. It is a positive regulator of disease defense that functions upstream of SA accumulation.	Integrase-type DNA-binding superfamily protein;(source:Araport11)
AT1G79840.4	protein_coding		Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development.  Directly regulated by WER.	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein;(source:Araport11)
AT1G42615.1	protein_coding			TATA box-binding protein associated factor RNA polymerase I subunit B;(source:Araport11)
AT1G53720.2	protein_coding		Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis?  trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged  amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR  proteins in nuclear speckles.	cyclophilin 59;(source:Araport11)
AT1G79690.2	protein_coding			nudix hydrolase homolog 3;(source:Araport11)
AT2G00450.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G61800.2	protein_coding			ENTH/VHS protein;(source:Araport11)
AT2G00430.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00430.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G09910.3	protein_coding			Ras-related small GTP-binding family protein;(source:Araport11)
AT2G00430.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G01495.1	small_nucleolar_rna			None;(source:Araport11)
AT5G09910.4	protein_coding			Ras-related small GTP-binding family protein;(source:Araport11)
AT3G23900.4	protein_coding			RNA recognition motif (RRM)-containing protein;(source:Araport11)
AT1G61790.2	protein_coding		Encodes the OST3/6 subunit of the hetero-oligomeric plant oligosaccharyltransferase complex (OST). Also identified by GWAS as having a role in interspecific pollen tube recognition.	Oligosaccharyltransferase complex/magnesium transporter family protein;(source:Araport11)
AT5G64570.2	protein_coding		Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.	beta-D-xylosidase 4;(source:Araport11)
AT5G64570.3	protein_coding		Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.	beta-D-xylosidase 4;(source:Araport11)
AT3G07945.1	long_noncoding_rna			None;(source:Araport11)
AT1G29775.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G62800.2	protein_coding			Protein with RING/U-box and TRAF-like domain;(source:Araport11)
AT3G02725.1	small_nucleolar_rna			None;(source:Araport11)
AT5G15070.4	protein_coding		Encodes a functional VIP1/PPIP5K-type ATP-grasp kinase that is involved in both InsP6 to InsP7 conversion and InsP7 to InsP8 conversion. It is the minor isoform in plants and is expressed in pollen.	Phosphoglycerate mutase-like family protein;(source:Araport11)
AT1G64140.uORF1	uORF			Derives_from AT1G64140;(source:Araport11)
AT1G63640.4	protein_coding			P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein;(source:Araport11)
AT2G13275.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G22110.2	protein_coding		Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic , rapidly dividing regions.	DNA polymerase epsilon subunit B2;(source:Araport11)
AT1G08720.2	protein_coding		enhanced disease resistance 1 (EDR1) confers resistance to powdery mildew disease caused by the fungus Erysiphe cichoracearumThe mRNA is cell-to-cell mobile.	Protein kinase superfamily protein;(source:Araport11)
AT3G11240.2	protein_coding		Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2.  Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6).  PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. ATE2 has also been show to be involved in the response to pathogens.	arginine-tRNA protein transferase 2;(source:Araport11)
AT3G11240.3	protein_coding		Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2.  Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6).  PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. ATE2 has also been show to be involved in the response to pathogens.	arginine-tRNA protein transferase 2;(source:Araport11)
AT4G32850.11	protein_coding		Encodes a nuclear poly(A) polymerase. Located in the nucleus.The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT4G32850.17	protein_coding		Encodes a nuclear poly(A) polymerase. Located in the nucleus.The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT4G32850.16	protein_coding		Encodes a nuclear poly(A) polymerase. Located in the nucleus.The mRNA is cell-to-cell mobile.	nuclear poly(a) polymerase;(source:Araport11)
AT3G11240.4	protein_coding		Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2.  Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6).  PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. ATE2 has also been show to be involved in the response to pathogens.	arginine-tRNA protein transferase 2;(source:Araport11)
AT3G11240.5	protein_coding		Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2.  Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6).  PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. ATE2 has also been show to be involved in the response to pathogens.	arginine-tRNA protein transferase 2;(source:Araport11)
AT5G62760.5	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G31580.3	protein_coding		ICA1 is a nuclear localized member of the tRNA(His) guanylyl transferase superfamily. Loss of function alleles show increased sensitivity to growth at high temperatures defects in cell cycle progression and DNA repair.	tRNAHis guanylyltransferase;(source:Araport11)
AT5G62760.6	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G31580.4	protein_coding		ICA1 is a nuclear localized member of the tRNA(His) guanylyl transferase superfamily. Loss of function alleles show increased sensitivity to growth at high temperatures defects in cell cycle progression and DNA repair.	tRNAHis guanylyltransferase;(source:Araport11)
AT5G06475.1	long_noncoding_rna			None;(source:Araport11)
AT3G02075.1	antisense_rna			Natural antisense transcript overlaps with AT3G07990;(source:Araport11)
AT2G22955.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G22960;(source:Araport11)
AT3G59340.3	protein_coding			solute carrier family 35 protein (DUF914);(source:Araport11)
AT3G59340.2	protein_coding			solute carrier family 35 protein (DUF914);(source:Araport11)
AT4G00710.2	protein_coding		Encodes BR-signaling kinase 3 (BSK3), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710).  Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized.	BR-signaling kinase 3;(source:Araport11)
AT1G04353.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G05230;(source:Araport11)
AT3G59340.4	protein_coding			solute carrier family 35 protein (DUF914);(source:Araport11)
AT5G59895.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G47890.3	protein_coding			B-box type zinc finger protein with CCT domain-containing protein;(source:Araport11)
AT1G76350.2	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT4G09245.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial;(source:Araport11)
AT1G76350.4	protein_coding			Plant regulator RWP-RK family protein;(source:Araport11)
AT2G20490.3	protein_coding			nucleolar RNA-binding Nop10p family protein;(source:Araport11)
AT1G09503.1	long_noncoding_rna			None;(source:Araport11)
AT3G02695.1	long_noncoding_rna			None;(source:Araport11)
AT4G04035.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G01940;(source:Araport11)
AT5G00355.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G23630.2	protein_coding			VIRB2-interacting protein 1;(source:Araport11)
AT4G15765.5	protein_coding			FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
AT2G07629.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G40710.2	protein_coding			zinc finger (C2H2 type) family protein;(source:Araport11)
AT5G09200.1	long_noncoding_rna			None;(source:Araport11)
AT2G10545.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G42960.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G42960.5	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G42960.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT2G42960.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G04350.2	protein_coding			vacuolar sorting-associated protein (DUF946);(source:Araport11)
AT1G04973.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G12810;(source:Araport11)
AT4G06130.1	miRNA_primary_transcript			microRNA ath-MIR3932b precursor;(source:Araport11)
AT3G16560.2	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT3G16560.3	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT3G27870.2	protein_coding			ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT3G27870.3	protein_coding			ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
AT1G73350.6	protein_coding			ankyrin repeat protein;(source:Araport11)
AT1G73350.7	protein_coding			ankyrin repeat protein;(source:Araport11)
AT3G16560.4	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT1G73350.5	protein_coding			ankyrin repeat protein;(source:Araport11)
AT3G48870.3	protein_coding		Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma.  May function redundantly with TIC complex  in chloroplast protein import.	Clp ATPase;(source:Araport11)
AT1G67180.3	protein_coding			zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein;(source:Araport11)
AT3G53920.2	protein_coding		Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme.  SIG3 transcribes specifically the psbN gene in plastids.	RNApolymerase sigma-subunit C;(source:Araport11)
AT1G67180.6	protein_coding			zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein;(source:Araport11)
AT1G79260.2	protein_coding			nitrobindin heme-binding domain protein;(source:Araport11)
AT1G67180.4	protein_coding			zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein;(source:Araport11)
AT3G48870.4	protein_coding		Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma.  May function redundantly with TIC complex  in chloroplast protein import.	Clp ATPase;(source:Araport11)
AT2G20180.8	protein_coding		Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark.  It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls.  Light reduces this activity in a phy-dependent manner.  The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis.  It also negatively regulates GA3 oxidase expression.	phytochrome interacting factor 3-like 5;(source:Araport11)
AT2G04915.1	long_noncoding_rna			None;(source:Araport11)
AT1G04317.2	novel_transcribed_region			novel transcribed region; detected in carpel, leaf, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT1G04317.1	novel_transcribed_region			novel transcribed region; detected in carpel, leaf, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT5G13190.2	protein_coding		Encodes a plasma membrane localized LITAF domain protein that interacts with LSD1 and acts as a negative regulation of hypersensitive cell death.	GSH-induced LITAF domain protein;(source:Araport11)
AT4G04765.1	long_noncoding_rna			None;(source:Araport11)
AT3G52535.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52540;(source:Araport11)
AT2G20180.4	protein_coding		Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark.  It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls.  Light reduces this activity in a phy-dependent manner.  The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis.  It also negatively regulates GA3 oxidase expression.	phytochrome interacting factor 3-like 5;(source:Araport11)
AT2G20180.5	protein_coding		Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark.  It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls.  Light reduces this activity in a phy-dependent manner.  The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis.  It also negatively regulates GA3 oxidase expression.	phytochrome interacting factor 3-like 5;(source:Araport11)
AT3G49980.2	protein_coding			F-box and associated interaction domains-containing protein;(source:Araport11)
AT5G04015.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G25510;(source:Araport11)
AT1G09757.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G77800;(source:Araport11)
AT1G09025.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G06145.1	long_noncoding_rna			None;(source:Araport11)
AT5G61830.2	protein_coding			NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT2G40165.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G21110.2	protein_coding			G10 family protein;(source:Araport11)
AT4G05710.1	long_noncoding_rna			None;(source:Araport11)
AT5G05310.4	protein_coding			TLC ATP/ADP transporter;(source:Araport11)
AT4G14750.3	protein_coding		Member of IQ67 (CaM binding) domain containing family.	IQ-domain 19;(source:Araport11)
AT4G06110.1	miRNA_primary_transcript			microRNA ath-MIR5996 precursor;(source:Araport11)
AT4G07030.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G21810;(source:Araport11)
AT2G42540.4	protein_coding		A cold-regulated gene whose product is targeted to the chloroplast. Cor15am  protects stromal proteins from aggregation under various stress conditions. Constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.  Late Embryogenesis abundant protein (LEA). Protects chloroplast membranes during freezing.	cold-regulated 15a;(source:Araport11)
AT3G03910.2	protein_coding		GDH3 encodes a member of the glutamate dehydrogenease family. Its expression is upregulated in response to cytokinin and it may play a role in the control of nitrogen metabolism in leaf development.	glutamate dehydrogenase 3;(source:Araport11)
AT5G54760.4	protein_coding			Translation initiation factor SUI1 family protein;(source:Araport11)
AT4G07585.1	novel_transcribed_region			novel transcribed region; detected in root, root apical meristem, leaf, dark-grown seedling, light-grown seedling, aerial;(source:Araport11)
AT5G36930.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G09513.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74730;(source:Araport11)
AT5G25520.4	protein_coding			SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT5G60142.4	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT3G01385.1	long_noncoding_rna			None;(source:Araport11)
AT3G08310.1	long_noncoding_rna			None;(source:Araport11)
AT5G45115.2	protein_coding			transcription termination factor family protein;(source:Araport11)
AT2G27150.4	protein_coding		Encodes the aldehyde oxidase delta isoform  catalyzing the final step in abscisic acid  biosynthesis.	abscisic aldehyde oxidase 3;(source:Araport11)
AT5G60142.3	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G60142.2	protein_coding			AP2/B3-like transcriptional factor family protein;(source:Araport11)
AT5G65320.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G07313.1	long_noncoding_rna			None;(source:Araport11)
AT4G19100.2	protein_coding			PAM68-like protein (DUF3464);(source:Araport11)
AT4G03985.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G01700;(source:Araport11)
AT5G38392.1	protein_coding			F-box/RNI superfamily protein;(source:Araport11)
AT1G30420.2	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 12;(source:Araport11)
AT1G65620.5	protein_coding		required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation.   Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.	Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
AT4G07010.1	long_noncoding_rna			None;(source:Araport11)
AT3G05590.2	protein_coding		Encodes cytoplasmic ribosomal protein L18.	ribosomal protein L18;(source:Araport11)
AT3G61390.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G22990.3	protein_coding		Encodes a member of the PHOSPHATE TRANSPORTER 5 family (PHT5;3). Overexpression of PHT5:3 leads to Pi sequestration into vacuoles and altered regulation of Pi starvation-responsive genes.	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein;(source:Araport11)
AT5G48790.3	protein_coding			LOW PSII ACCUMULATION protein (DUF1995);(source:Araport11)
AT3G61390.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G61390.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G08643.1	small_nucleolar_rna			None;(source:Araport11)
AT3G01630.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT4G39860.3	protein_coding			hematological/neurological-like protein;(source:Araport11)
AT4G06210.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G14700;(source:Araport11)
AT3G21755.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G21760;(source:Araport11)
AT1G67060.2	protein_coding			peptidase M50B-like protein;(source:Araport11)
AT5G27390.4	protein_coding			tagatose-6-phosphate ketose/aldose isomerase, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein);(source:Araport11)
AT1G19780.2	protein_coding		Encodes a member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.	cyclic nucleotide gated channel 8;(source:Araport11)
AT4G25610.3	protein_coding			C2H2-like zinc finger protein;(source:Araport11)
AT5G11030.7	protein_coding		alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.	aberrant root formation protein;(source:Araport11)
AT5G00985.1	long_noncoding_rna			None;(source:Araport11)
AT5G11030.5	protein_coding		alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.	aberrant root formation protein;(source:Araport11)
AT5G11030.4	protein_coding		alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.	aberrant root formation protein;(source:Araport11)
AT3G09745.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G62090;(source:Araport11)
AT3G09745.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G62090;(source:Araport11)
AT5G11030.9	protein_coding		alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.	aberrant root formation protein;(source:Araport11)
AT5G11030.8	protein_coding		alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.	aberrant root formation protein;(source:Araport11)
AT5G38360.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G18610.3	protein_coding		Encodes ATNUC-L2 (NUCLEOLIN LIKE 2).	nucleolin like 2;(source:Araport11)
AT3G10010.2	protein_coding		Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks.	demeter-like 2;(source:Araport11)
AT1G03545.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G03550;(source:Araport11)
AT1G11450.3	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G01516.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G11450.5	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT1G11450.4	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT4G14716.2	protein_coding		Encodes an acireductone dioxygenase that is activated by interaction with a heterotrimeric G protein beta subunit.  It is a metalloenzyme and is likely involved in the methionine salvage pathway.	acireductone dioxygenase 1;(source:Araport11)
AT5G16230.2	protein_coding		Encodes one of two &#8710;9 palmitoyl-ACP desaturases responsible for the biosynthesis of &#969;-7 fatty acids in the maturing endosperm.	Plant stearoyl-acyl-carrier-protein desaturase family protein;(source:Araport11)
AT4G09765.1	long_noncoding_rna			None;(source:Araport11)
AT1G49980.6	protein_coding			DNA/RNA polymerases superfamily protein;(source:Araport11)
AT1G49980.7	protein_coding			DNA/RNA polymerases superfamily protein;(source:Araport11)
AT1G49980.4	protein_coding			DNA/RNA polymerases superfamily protein;(source:Araport11)
AT1G49980.5	protein_coding			DNA/RNA polymerases superfamily protein;(source:Araport11)
AT1G49980.2	protein_coding			DNA/RNA polymerases superfamily protein;(source:Araport11)
AT1G49980.3	protein_coding			DNA/RNA polymerases superfamily protein;(source:Araport11)
AT5G38340.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G38340.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G10330.7	protein_coding		Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.	histidinol phosphate aminotransferase 1;(source:Araport11)
AT5G52410.3	protein_coding			oxidoreductase/transition metal ion-binding protein;(source:Araport11)
AT1G49980.8	protein_coding			DNA/RNA polymerases superfamily protein;(source:Araport11)
AT1G49980.9	protein_coding			DNA/RNA polymerases superfamily protein;(source:Araport11)
AT1G08417.1	long_noncoding_rna			None;(source:Araport11)
AT5G10330.5	protein_coding		Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.	histidinol phosphate aminotransferase 1;(source:Araport11)
AT4G37180.3	protein_coding		UIF1 is a nuclear and cytoplasmically localized myb-domain containing member of the GARP G2-like subfamily of transcription factors. Interacts with ULT1 and binds to the WUS promoter. UIF1 binding domains are also found in CUC and AG promoters suggesting they are also direct targets.  This locus was also identified as a putative cytoskeletal protein in a yeast screen.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G53940.2	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT3G52170.3	protein_coding			DNA binding protein;(source:Araport11)
AT3G52170.4	protein_coding			DNA binding protein;(source:Araport11)
AT5G66840.2	protein_coding			SAP domain-containing protein;(source:Araport11)
AT4G13890.2	protein_coding			Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT5G58610.4	protein_coding			PHD finger transcription factor;(source:Araport11)
AT4G04260.3	protein_coding			Bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT2G09590.1	long_noncoding_rna			None;(source:Araport11)
AT5G49990.3	protein_coding			Xanthine/uracil permease family protein;(source:Araport11)
AT4G03400.2	protein_coding		Encodes a GH3-related gene involved in red light-specific hypocotyl elongation.  Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation.	Auxin-responsive GH3 family protein;(source:Araport11)
AT5G58610.5	protein_coding			PHD finger transcription factor;(source:Araport11)
AT3G48343.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G41620.3	protein_coding			intracellular protein transporter USO1-like protein;(source:Araport11)
AT5G41620.2	protein_coding			intracellular protein transporter USO1-like protein;(source:Araport11)
AT2G24710.3	protein_coding		member of Putative ligand-gated ion channel subunit family	glutamate receptor 2.3;(source:Araport11)
AT1G08653.1	long_noncoding_rna			None;(source:Araport11)
AT3G05005.1	long_noncoding_rna			None;(source:Araport11)
AT5G10330.8	protein_coding		Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.	histidinol phosphate aminotransferase 1;(source:Araport11)
AT1G09915.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G15580.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G05920.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT3G06695.1	long_noncoding_rna			None;(source:Araport11)
AT2G09470.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G43410;(source:Araport11)
AT4G31400.2	protein_coding		Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an  N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7  temperature-sensitive mutation.  Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development. Inactivation of CTF7 results in severe defects in reproduction and vegetative growth.	protein CTF7;(source:Araport11)
AT1G54475.1	protein_coding			LRR receptor-like Serine/Threonine-kinase;(source:Araport11)
AT1G05173.1	long_noncoding_rna			None;(source:Araport11)
AT5G22800.2	protein_coding		A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.	Alanyl-tRNA synthetase, class IIc;(source:Araport11)
AT1G04943.1	long_noncoding_rna			None;(source:Araport11)
AT1G17410.3	protein_coding			Nucleoside diphosphate kinase family protein;(source:Araport11)
AT1G04307.1	long_noncoding_rna			None;(source:Araport11)
AT1G80420.5	protein_coding		Encodes a component of plant break excision repair and functions at several stages during active DNA demethylation in Arabidopsis.	BRCT domain-containing DNA repair protein;(source:Araport11)
AT3G56510.3	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G34040.2	protein_coding			Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT4G04415.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G49580.3	protein_coding			response to low sulfur 1;(source:Araport11)
AT3G56510.5	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G19080.2	protein_coding			metaxin-like protein;(source:Araport11)
AT4G06655.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G80830.2	protein_coding		Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants.	natural resistance-associated macrophage protein 1;(source:Araport11)
AT1G49430.2	protein_coding		Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Also has overlapping function with CER8 in cuticular wax synthesis.	long-chain acyl-CoA synthetase 2;(source:Araport11)
AT2G32230.2	protein_coding		Encodes a protein-only RNase P that is involved in the 5? cleavage of the precursor tRNAs and is able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. Mutants show a drastic reduction in the levels of mature plastid tRNA-Phe(GAA) and tRNA-Arg(ACG), limiting plastid gene expression.	proteinaceous RNase P 1;(source:Araport11)
AT4G32280.2	protein_coding			indole-3-acetic acid inducible 29;(source:Araport11)
AT4G32280.3	protein_coding			indole-3-acetic acid inducible 29;(source:Araport11)
AT5G27730.3	protein_coding			heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G27730.2	protein_coding			heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G27730.5	protein_coding			heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT5G27730.4	protein_coding			heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624);(source:Araport11)
AT1G60440.3	protein_coding		The gene AT1G60440 encodes pantothenate kinase 1. Its molecular function was shown to phosphorylate pantothenate to form 4?-phosphopantothenate.	pantothenate kinase 1;(source:Araport11)
AT5G17240.2	protein_coding			SET domain group 40;(source:Araport11)
AT5G02065.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G11990.2	protein_coding			O-fucosyltransferase family protein;(source:Araport11)
AT5G24960.2	protein_coding		putative cytochrome P450	cytochrome P450, family 71, subfamily A, polypeptide 14;(source:Araport11)
AT1G69670.2	protein_coding		cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.	cullin 3B;(source:Araport11)
AT5G45500.7	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT5G37300.4	protein_coding		Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis.	O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT2G40860.2	protein_coding			protein kinase family protein / protein phosphatase 2C ( PP2C) family protein;(source:Araport11)
AT4G37445.2	protein_coding			calcium ion-binding protein;(source:Araport11)
AT3G06765.1	long_noncoding_rna			None;(source:Araport11)
AT5G37300.3	protein_coding		Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis.	O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT5G37300.2	protein_coding		Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis.	O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT1G52100.4	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G52100.5	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G52100.3	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G12140.3	protein_coding		belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	flavin-monooxygenase glucosinolate S-oxygenase 5;(source:Araport11)
AT1G67890.4	protein_coding		Encodes a protein with similarity to RAF MAP kinases. Based on loss of function phenotype, RAF11 appears to be involved in mediating ABA responses such as dormancy and environmental stress. Expressed in most plant tissues but excluded from root tips and young leaves.	PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT2G29090.4	protein_coding		Encodes a protein with ABA 8 Prime-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.	cytochrome P450, family 707, subfamily A, polypeptide 2;(source:Araport11)
AT2G04615.1	long_noncoding_rna			None;(source:Araport11)
AT1G07883.1	small_nuclear_rna			U6;(source:Araport11)
AT2G29090.3	protein_coding		Encodes a protein with ABA 8 Prime-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.	cytochrome P450, family 707, subfamily A, polypeptide 2;(source:Araport11)
AT1G67890.3	protein_coding		Encodes a protein with similarity to RAF MAP kinases. Based on loss of function phenotype, RAF11 appears to be involved in mediating ABA responses such as dormancy and environmental stress. Expressed in most plant tissues but excluded from root tips and young leaves.	PAS domain-containing protein tyrosine kinase family protein;(source:Araport11)
AT1G09583.1	other_rna			None;(source:Araport11)
AT5G23535.2	protein_coding			KOW domain-containing protein;(source:Araport11)
AT5G00695.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G26030.4	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT2G26030.5	protein_coding			F-box/RNI-like/FBD-like domains-containing protein;(source:Araport11)
AT2G25980.2	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT3G21900.2	protein_coding			Receptor-like protein kinase-related family protein;(source:Araport11)
AT5G02305.1	small_nucleolar_rna			None;(source:Araport11)
AT4G09485.1	long_noncoding_rna			None;(source:Araport11)
AT5G14960.2	protein_coding			DP-E2F-like 2;(source:Araport11)
AT5G04425.1	small_nucleolar_rna			None;(source:Araport11)
AT3G16700.3	protein_coding			Fumarylacetoacetate (FAA) hydrolase family;(source:Araport11)
AT4G05455.1	miRNA_primary_transcript			microRNA ath-MIR5645e precursor;(source:Araport11)
AT5G24630.10	protein_coding		This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	double-stranded DNA binding protein;(source:Araport11)
AT5G00370.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G07445.1	long_noncoding_rna			None;(source:Araport11)
AT3G27960.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G08110.3	protein_coding		Plays a role in the maintenance of genome stability and the repair of aberrant replication intermediates in the root meristem. Is involved with RAD1, FAN1, and RECQ4A in the repair of DNA CLs.	UBQ, helicase-c and DEAD-like helicase domain-containing protein;(source:Araport11)
AT2G41105.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G06615.1	long_noncoding_rna			None;(source:Araport11)
AT5G45830.5	protein_coding		Encodes DOG1 (DELAY OF GERMINATION 1).  A quantitative trait locus involved in the control of seed dormancy.  Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1.  DOG1 expression is seed-specific.	delay of germination 1;(source:Araport11)
AT5G48450.2	protein_coding		Encodes a protein with two DUF26 domains and a signal peptide for secretion. The protein is transported to the apoplast when it is expressed as a GFP fusion protein.	SKU5 similar 3;(source:Araport11)
AT3G25510.2	protein_coding			disease resistance protein (TIR-NBS-LRR class) family protein;(source:Araport11)
AT5G17520.2	protein_coding		Encodes a maltose transporter that is expressed in leaves and roots. Mutations at the MEX1 locus cause accumulation of both starch and maltose in  leaves, with maltose levels at least 40 times higher than that of wild-type. This gene encodes a protein located in the chloroplast envelope.	root cap 1 (RCP1);(source:Araport11)
AT1G31420.3	protein_coding		Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.	Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G39130.3	protein_coding			Transmembrane amino acid transporter family protein;(source:Araport11)
AT1G32575.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05840.3	protein_coding		Encodes 20S proteasome subunit PAA2 (PAA2).	20S proteasome subunit PAA2;(source:Araport11)
AT1G03960.6	protein_coding			Calcium-binding EF hand family protein;(source:Araport11)
AT5G01730.4	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein 4;(source:Araport11)
AT1G30660.2	protein_coding		A truncated version of Twinkle that retains only the DNA primase domain.	nucleic acid binding protein;(source:Araport11)
AT2G28550.6	protein_coding			related to AP2.7;(source:Araport11)
AT3G58790.2	protein_coding		Encodes a protein with  putative galacturonosyltransferase activity.	galacturonosyltransferase 15;(source:Araport11)
AT5G07395.1	long_noncoding_rna			None;(source:Araport11)
AT1G77080.6	protein_coding		MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G77080.8	protein_coding		MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G77080.9	protein_coding		MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT3G15395.5	protein_coding			HrpN-interacting protein from malus protein;(source:Araport11)
AT5G44010.3	protein_coding			fanconi anemia group F protein (FANCF);(source:Araport11)
AT5G17300.2	protein_coding		Myb-like transcription factor that regulates hypocotyl growth by  regulating free auxin levels in a time-of-day specific manner.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G06385.1	long_noncoding_rna			None;(source:Araport11)
AT1G11310.3	protein_coding		A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter. It is a novel virulence target of the P. syringae type III secreted effector HopZ2.	Seven transmembrane MLO family protein;(source:Araport11)
AT2G36895.3	protein_coding			D-tagatose-1,6-bisphosphate aldolase subunit;(source:Araport11)
AT4G21780.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G00790.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G27473.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT1G35170.2	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT3G02495.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G12260;(source:Araport11)
AT3G09615.1	miRNA_primary_transcript			microRNA ath-MIR8182 precursor;(source:Araport11)
AT3G19613.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G19090.2	protein_coding			RNA-binding protein;(source:Araport11)
AT3G49070.2	protein_coding			transmembrane protein, putative (DUF677);(source:Araport11)
AT3G06715.1	long_noncoding_rna			None;(source:Araport11)
AT3G50190.2	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT1G07607.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G50020;(source:Araport11)
AT4G39630.2	protein_coding			translation initiation factor;(source:Araport11)
AT3G58010.2	protein_coding			plastoglobulin 34kD;(source:Araport11)
AT3G15950.3	protein_coding		Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants.  Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.	DNA topoisomerase-like protein;(source:Araport11)
AT1G10060.4	protein_coding		encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	branched-chain amino acid transaminase 1;(source:Araport11)
AT5G04765.1	long_noncoding_rna			None;(source:Araport11)
AT5G45570.2	protein_coding			Ulp1 protease family protein;(source:Araport11)
AT5G04055.1	long_noncoding_rna			None;(source:Araport11)
AT4G02140.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G46490.7	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G12420.2	protein_coding			ACT domain repeat 8;(source:Araport11)
AT1G52120.2	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT4G03245.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G01790.3	protein_coding			Ribosomal protein L13 family protein;(source:Araport11)
AT4G16990.16	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT5G57630.2	protein_coding		CBL-interacting protein kinase.When mutated plants are hypersensitive to salt and osmotic stress.	CBL-interacting protein kinase 21;(source:Araport11)
AT4G03000.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G19020.2	protein_coding		Pollen expressed protein required for pollen tube growth. Along with other members of the LRX family, interacts with RALF4 to control pollen tube growth and integrity. Loss of function results in premature pollen tube rupture and reduced fertility.	Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G53250.2	protein_coding			SAUR-like auxin-responsive protein family;(source:Araport11)
AT1G04430.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G04955.1	small_nucleolar_rna			None;(source:Araport11)
AT4G04960.2	protein_coding			Concanavalin A-like lectin protein kinase family protein;(source:Araport11)
AT1G68190.2	protein_coding			B-box zinc finger family protein;(source:Araport11)
AT2G40960.2	protein_coding			Single-stranded nucleic acid binding R3H protein;(source:Araport11)
AT5G13020.2	protein_coding			Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein;(source:Araport11)
AT5G13020.3	protein_coding			Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein;(source:Araport11)
AT4G11900.8	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT5G47760.2	protein_coding		serine/threonine protein kinase	2-phosphoglycolate phosphatase 2;(source:Araport11)
AT1G62540.2	protein_coding		belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesThe mRNA is cell-to-cell mobile.	flavin-monooxygenase glucosinolate S-oxygenase 2;(source:Araport11)
AT5G07940.4	protein_coding			dentin sialophosphoprotein-like protein;(source:Araport11)
AT5G07940.5	protein_coding			dentin sialophosphoprotein-like protein;(source:Araport11)
AT3G00740.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G04583.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G07473;(source:Araport11)
AT2G27930.5	protein_coding			PLATZ transcription factor family protein;(source:Araport11)
AT4G37860.2	protein_coding			SPT2 chromatin protein;(source:Araport11)
AT5G44510.2	protein_coding		Encodes TAO1 (Target of AvrB Operation), a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB.	target of AVRB operation1;(source:Araport11)
AT4G06855.1	long_noncoding_rna			None;(source:Araport11)
AT3G25013.3	protein_coding			Synaptobrevin family protein;(source:Araport11)
AT1G04753.1	long_noncoding_rna			None;(source:Araport11)
AT2G38890.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G28710.4	protein_coding			Nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT2G09600.2	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, aerial, shoot apical meristem;(source:Araport11)
AT2G04525.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G03460;(source:Araport11)
AT1G08223.1	long_noncoding_rna			None;(source:Araport11)
AT5G08595.1	long_noncoding_rna			None;(source:Araport11)
AT1G55520.3	protein_coding		TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.	TATA binding protein 2;(source:Araport11)
AT5G43570.2	protein_coding		Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family.  Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	Serine protease inhibitor, potato inhibitor I-type family protein;(source:Araport11)
AT5G59390.2	protein_coding			XH/XS domain-containing protein;(source:Araport11)
AT3G03970.6	protein_coding		At3G03970 encodes the plant KASH protein SINE2; SINE2 interacts with SUN1 and SUN2 and is localized at the nuclear envelope.	ARM repeat superfamily protein;(source:Araport11)
AT3G01515.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G04810;(source:Araport11)
AT2G42600.3	protein_coding		Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.PPC1 and PPC2 are crucial for balancing carbon and nitrogen metabolism.	phosphoenolpyruvate carboxylase 2;(source:Araport11)
AT1G44125.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G44120;(source:Araport11)
AT3G44630.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G00510.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G07225.1	long_noncoding_rna			None;(source:Araport11)
AT4G36850.4	protein_coding			PQ-loop repeat family protein / transmembrane family protein;(source:Araport11)
AT4G15415.5	protein_coding		B Prime regulatory subunit of PP2A (AtB Primegamma)	Protein phosphatase 2A regulatory B subunit family protein;(source:Araport11)
AT4G28830.3	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G44310.4	protein_coding		Mutants are resistant to indole-3-acetonitrile (IAN). NIT1 catalyzes the terminal activation step in indole-acetic acid biosynthesis. Predominantly expressed isoform of nitrilase isoenzyme family.   Aggregation of NIT1 in cells directly abutting wound sites is one of the earliest events associated with wound and herbicide-induced cell death.  The protein undergoes thiolation following treatment with the  oxidant tert-butylhydroperoxide. It is also involved in the conversion of IAN to IAM (indole-3-acetamide) and other non-auxin-related metabolic processes.The mRNA is cell-to-cell mobile.	nitrilase 1;(source:Araport11)
AT5G17680.2	protein_coding			disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT5G40880.2	protein_coding			WD-40 repeat family protein / zfwd3 protein (ZFWD3);(source:Araport11)
AT1G29950.uORF2-1	uORF			Derives_from AT1G29950;(source:Araport11)
AT5G06950.5	protein_coding		Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment.	bZIP transcription factor family protein;(source:Araport11)
AT5G22700.6	protein_coding			LOW protein: F-box/FBD/LRR-like protein;(source:Araport11)
AT1G80050.2	protein_coding		Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol.	adenine phosphoribosyl transferase 2;(source:Araport11)
AT4G11400.2	protein_coding			ARID/BRIGHT DNA-binding , ELM2 domain and myb-like DNA-binding domain-containing protein;(source:Araport11)
AT4G23960.2	protein_coding			F-box family protein;(source:Araport11)
AT4G11460.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 30;(source:Araport11)
AT5G09460.uORF1-2	uORF			Derives_from AT5G09460;(source:Araport11)
AT5G09175.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G64000;(source:Araport11)
AT2G08000.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G24310;(source:Araport11)
AT1G74580.2	protein_coding			Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT4G04595.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT4G06025.1	novel_transcribed_region			novel transcribed region; detected in flower, pollen;(source:Araport11)
AT2G01400.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G09785.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G66880;(source:Araport11)
AT2G08030.1	long_noncoding_rna			None;(source:Araport11)
AT3G03380.2	protein_coding		Encodes a putative DegP protease.The mRNA is cell-to-cell mobile.	DegP protease 7;(source:Araport11)
AT2G41460.4	protein_coding		Apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.	apurinic endonuclease-redox protein;(source:Araport11)
AT3G25640.2	protein_coding			MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
AT5G24900.2	protein_coding		Member of CYP714A. Encodes one of the two tandemly duplicated gene pair ELA1 (CYP714A1) and ELA2 (CYP714A2), homologs of the rice cytochrome P450 monooxygenase gene EUI1. Double mutation of ELA1 and ELA2 results in increased biomass and enlarged organs.	cytochrome P450, family 714, subfamily A, polypeptide 2;(source:Araport11)
AT1G72275.2	protein_coding			LOW protein: nuclease-like protein;(source:Araport11)
AT2G00810.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G02215.1	long_noncoding_rna			None;(source:Araport11)
AT2G38660.8	protein_coding			Amino acid dehydrogenase family protein;(source:Araport11)
AT5G12440.11	protein_coding			CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT1G33320.2	protein_coding			Pyridoxal phosphate (PLP)-dependent transferases superfamily protein;(source:Araport11)
AT5G08360.2	protein_coding			Stu1, putative (DUF789);(source:Araport11)
AT4G08445.1	long_noncoding_rna			None;(source:Araport11)
AT5G05175.1	long_noncoding_rna			None;(source:Araport11)
AT3G53760.3	protein_coding		Encodes GCP4 (gamma-Tubulin Complex Protein 4), required for microtubule organization.	GAMMA-TUBULIN COMPLEX PROTEIN 4;(source:Araport11)
AT1G08237.1	long_noncoding_rna			None;(source:Araport11)
AT5G06265.10	protein_coding			hyaluronan mediated motility receptor-like protein;(source:Araport11)
AT1G18415.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G18420;(source:Araport11)
AT4G17770.2	protein_coding		Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. Phosphorylated TPS5 extracted from Arabidopsis cells binds directly to 14-3-3 isoforms.The mRNA is cell-to-cell mobile.	trehalose phosphatase/synthase 5;(source:Araport11)
AT5G49110.3	protein_coding			fanconi anemia group I-like protein;(source:Araport11)
AT2G31902.5	antisense_rna			Natural antisense transcript overlaps with AT2G31900;(source:Araport11)
AT1G18773.2	protein_coding			acyl thioesterase-like protein;(source:Araport11)
AT1G18773.3	protein_coding			acyl thioesterase-like protein;(source:Araport11)
AT1G18773.4	protein_coding			acyl thioesterase-like protein;(source:Araport11)
AT5G16530.2	protein_coding		Encodes PIN5, an atypical member of the PIN family.  PIN5 is a functional auxin transporter that is required for auxin-mediated development. PIN5 does not have a direct role in cell-to-cell transport but regulates intracellular auxin homeostasis and metabolism. PIN5 localizes, unlike other characterized plasma membrane PIN proteins, to endoplasmic reticulum (ER), presumably mediating auxin flow from the cytosol to the lumen of the ER. It acts together with PIN8 in affecting pollen development and auxin homeostasis.	Auxin efflux carrier family protein;(source:Araport11)
AT3G07630.3	protein_coding		Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis.  Not less than six genes encoding ADT were identi&#64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	arogenate dehydratase 2;(source:Araport11)
AT4G13670.4	protein_coding			plastid transcriptionally active 5;(source:Araport11)
AT2G20940.2	protein_coding			transmembrane protein, putative (DUF1279);(source:Araport11)
AT3G08170.2	antisense_rna			Natural antisense transcript overlaps with AT3G50950;(source:Araport11)
AT5G00385.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G06983.1	long_noncoding_rna			None;(source:Araport11)
AT3G03250.2	protein_coding		Is thought to encode a cytosolic UDP-glucose pyrophosphorylase with strong similarity to potato UTP--glucose-1-phosphate uridylyltransferase.  Downregulated by flooding.	UDP-GLUCOSE PYROPHOSPHORYLASE 1;(source:Araport11)
AT3G03250.3	protein_coding		Is thought to encode a cytosolic UDP-glucose pyrophosphorylase with strong similarity to potato UTP--glucose-1-phosphate uridylyltransferase.  Downregulated by flooding.	UDP-GLUCOSE PYROPHOSPHORYLASE 1;(source:Araport11)
AT5G01950.6	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G01950.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G26680.5	protein_coding		Encodes a FEN1 homolog that has double-flap endonuclease activity, weak GEN activity towards bubble DNA structures and flap endonuclease activity towards substrates with a single-flap structure, but lacks the 5&#8242; exonuclease activity towards DNA substrates with a nick on one strand, and GEN activity towards gapped DNA without any flap. It is expressed in rapidly dividing cells and mutants have smaller roots and hypocotyls.	5-3 exonuclease family protein;(source:Araport11)
AT5G01970.2	protein_coding			unknown protein;(source:TAIR10)
AT5G16690.2	protein_coding		Origin Recognition Complex subunit 3. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.	origin recognition complex subunit 3;(source:Araport11)
AT4G23270.3	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.The mRNA is cell-to-cell mobile.	cysteine-rich RLK (RECEPTOR-like protein kinase) 19;(source:Araport11)
AT4G23270.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.The mRNA is cell-to-cell mobile.	cysteine-rich RLK (RECEPTOR-like protein kinase) 19;(source:Araport11)
AT4G05865.1	long_noncoding_rna			None;(source:Araport11)
AT2G07245.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G19620;(source:Araport11)
AT5G25755.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G08127.1	long_noncoding_rna			None;(source:Araport11)
AT5G27680.5	protein_coding			RECQ helicase SIM;(source:Araport11)
AT3G01135.1	antisense_rna			Natural antisense transcript overlaps with AT3G02700;(source:Araport11)
AT3G05160.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G02510.3	protein_coding			UDP-glucose 6-dehydrogenase;(source:Araport11)
AT1G09765.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G05360.3	protein_coding		KMS2 encode a endoplasmic reticulum protein  involved in the early secretory pathway.	vacuole membrane-like protein;(source:Araport11)
AT5G14400.2	protein_coding		Encodes a brassinosteroid C-22 hydroxylase.	cytochrome P450, family 724, subfamily A, polypeptide 1;(source:Araport11)
AT4G18600.5	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein;(source:Araport11)
AT1G05567.1	long_noncoding_rna			None;(source:Araport11)
AT1G04863.1	long_noncoding_rna			None;(source:Araport11)
AT1G08037.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G55190;(source:Araport11)
AT3G47010.4	protein_coding			Glycosyl hydrolase family protein;(source:Araport11)
AT5G13220.7	protein_coding		Encodes JAZ10, a member of the JASMONATE ZIM-domain (JAZ) proteins acting as repressors of jasmonate (JA) signaling. An alternatively spliced form (JAZ10.4) of JAZ10 lacks the Jas domain.	jasmonate-zim-domain protein 10;(source:Araport11)
AT4G03430.2	protein_coding		Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes.	pre-mRNA splicing factor-like protein;(source:Araport11)
AT4G00830.5	protein_coding		Encodes a heterogeneous nuclear ribonucleoprotein (hnRNP-Q) that is involved in the plant innate immune response and may function as a suppressor of cell-autonomous immunity.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT1G58390.2	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT4G07245.1	long_noncoding_rna			None;(source:Araport11)
AT3G08455.1	long_noncoding_rna			None;(source:Araport11)
AT1G30660.3	protein_coding		A truncated version of Twinkle that retains only the DNA primase domain.	nucleic acid binding protein;(source:Araport11)
AT1G04673.1	long_noncoding_rna			None;(source:Araport11)
AT3G53780.3	protein_coding			RHOMBOID-like protein 4;(source:Araport11)
AT4G08295.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G30610;(source:Araport11)
AT2G44798.9	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44800;(source:Araport11)
AT5G09745.1	novel_transcribed_region			novel transcribed region; detected in root, root apical meristem, dark-grown seedling, light-grown seedling;(source:Araport11)
AT1G77145.2	protein_coding			transmembrane protein, putative (DUF506);(source:Araport11)
AT1G04167.1	long_noncoding_rna			None;(source:Araport11)
AT1G32583.2	protein_coding		A microRNA MIR400 is derived from the first intron of At1g32583 in the 5 PrimeUTR. A stress-induced alternative splicing event in At1g32583 resulted in greater accumulation of miR400 primary transcripts and a low level of mature miR400.	tapetum determinant protein;(source:Araport11)
AT5G61820.2	protein_coding			stress up-regulated Nod 19 protein;(source:Araport11)
AT4G10130.4	protein_coding			DNAJ heat shock N-terminal domain-containing protein;(source:Araport11)
AT1G53887.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G08645.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G40550.4	protein_coding			SGF29 tudor-like domain-containing protein;(source:Araport11)
AT3G03145.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G15570;(source:Araport11)
AT2G41100.6	protein_coding		encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.The mRNA is cell-to-cell mobile.	Calcium-binding EF hand family protein;(source:Araport11)
AT1G51645.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G51640;(source:Araport11)
AT3G61760.3	protein_coding			DYNAMIN-like 1B;(source:Araport11)
AT3G47990.2	protein_coding			SUGAR-INSENSITIVE 3;(source:Araport11)
AT1G43640.2	protein_coding		Member of TLP family of tubby like proteins that also contain an F-Box.	tubby like protein 5;(source:Araport11)
AT1G77410.2	protein_coding			beta-galactosidase 16;(source:Araport11)
AT5G11710.2	protein_coding		EPSIN1 plays an important role in the vacuolar trafficking of soluble proteins at the trans-Golgi network  via its interaction with gamma-ADR, VTI11, VSR1, and clathrin. Associated  with actin filaments and with the Golgi complex. Expressed in most tissues.The mRNA is cell-to-cell mobile.	ENTH/VHS family protein;(source:Araport11)
AT5G25995.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G80000.3	protein_coding			CASC3/Barentsz eIF4AIII binding protein;(source:Araport11)
AT3G23470.3	protein_coding			Cyclopropane-fatty-acyl-phospholipid synthase;(source:Araport11)
AT3G08585.1	long_noncoding_rna			None;(source:Araport11)
AT1G59900.2	protein_coding		encodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC)The mRNA is cell-to-cell mobile.	pyruvate dehydrogenase complex E1 alpha subunit;(source:Araport11)
AT2G07305.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G20500;(source:Araport11)
AT1G50820.2	protein_coding			aminotransferase-like, mobile domain protein;(source:Araport11)
AT1G03620.10	protein_coding			ELMO/CED-12 family protein;(source:Araport11)
AT1G27720.2	protein_coding			TBP-associated factor 4B;(source:Araport11)
AT1G23000.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G06260.1	miRNA_primary_transcript			microRNA ath-MIR4221 precursor;(source:Araport11)
AT5G51170.4	protein_coding			U6 snRNA phosphodiesterase-like protein;(source:Araport11)
AT5G01405.1	long_noncoding_rna			None;(source:Araport11)
AT1G08883.1	long_noncoding_rna			None;(source:Araport11)
AT4G22350.3	protein_coding			Ubiquitin C-terminal hydrolases superfamily protein;(source:Araport11)
AT3G08430.1	long_noncoding_rna			None;(source:Araport11)
AT4G12800.2	protein_coding		Encodes subunit L of photosystem I reaction center.	photosystem I subunit l;(source:Araport11)
AT3G00810.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G30380.2	protein_coding		Encodes a Plant Natriuretic Peptide (PNP). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive.	Barwin-related endoglucanase;(source:Araport11)
AT5G02155.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G14120;(source:Araport11)
AT3G50380.3	protein_coding			vacuolar protein sorting-associated protein, putative (DUF1162);(source:Araport11)
AT4G33735.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G51300.2	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G42170.4	protein_coding			Actin family protein;(source:Araport11)
AT1G30520.2	protein_coding		Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.	acyl-activating enzyme 14;(source:Araport11)
AT1G30520.4	protein_coding		Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.	acyl-activating enzyme 14;(source:Araport11)
AT3G43503.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G77460.4	protein_coding		Encodes a plasma membrane, microtubule associated protein with sequence similarity to CSI1 that is involved in cellulose biosynthesis and cell elongation. A mutation in CSI3 alone do not appear to affect growth but enhances the cell elongation phenotype of CSI1 mutants. CSI3 co localizes with CSI1 and CESA3 and CESA6.	CELLULOSE SYNTHASE INTERACTIVE 3;(source:Araport11)
AT1G66380.3	protein_coding		Encodes a member of the MYB family of transcription factors. Involved in regulation of anthocyanin biosynthesis. Affects the expression of enzymes involved in later steps of anthocyanin biosynthesis	myb domain protein 114;(source:Araport11)
AT2G01090.3	protein_coding			Ubiquinol-cytochrome C reductase hinge protein;(source:Araport11)
AT1G30280.2	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G04847.1	long_noncoding_rna			None;(source:Araport11)
AT5G00715.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00580.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00580.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G46920.2	protein_coding			kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein;(source:Araport11)
AT3G05605.1	long_noncoding_rna			None;(source:Araport11)
AT1G09197.1	long_noncoding_rna			None;(source:Araport11)
AT1G74520.2	protein_coding		Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible.	HVA22 homologue A;(source:Araport11)
AT3G51075.13	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G51070;(source:Araport11)
AT1G53280.2	protein_coding		Encodes a homolog of animal DJ-1 superfamily protein.  In the A. thaliana genome, three genes encoding close homologs of human DJ-1 were identified AT3G14990 (DJ1A), AT1G53280 (DJ1B) and AT4G34020 (DJ1C).  Among the three homologs, DJ1C is essential for chloroplast development and viability. It exhibits glyoxalase activity towards glyoxal and methylglyoxal.	Class I glutamine amidotransferase-like superfamily protein;(source:Araport11)
AT5G43990.16	protein_coding		Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  Localized to the nucleolus, maybe involved in regulation of rRNA expression.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT2G32390.5	protein_coding		Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family.	glutamate receptor 3.5;(source:Araport11)
AT1G23480.4	protein_coding		encodes a gene similar to cellulose synthase	cellulose synthase-like A3;(source:Araport11)
AT4G32342.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G11470.7	protein_coding			4-phosphopantetheinyl transferase superfamily;(source:Araport11)
AT3G18070.6	protein_coding			beta glucosidase 43;(source:Araport11)
AT5G41060.4	protein_coding			DHHC-type zinc finger family protein;(source:Araport11)
AT1G62540.3	protein_coding		belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesThe mRNA is cell-to-cell mobile.	flavin-monooxygenase glucosinolate S-oxygenase 2;(source:Araport11)
AT2G44065.3	protein_coding			Ribosomal protein L2 family;(source:Araport11)
AT1G09045.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09227.1	long_noncoding_rna			None;(source:Araport11)
AT1G70610.2	protein_coding		member of TAP subfamily	transporter associated with antigen processing protein 1;(source:Araport11)
AT3G54350.4	protein_coding			Forkhead-associated (FHA) domain-containing protein;(source:Araport11)
AT3G58220.3	protein_coding			TRAF-like family protein;(source:Araport11)
AT5G27560.2	protein_coding			DUF1995 domain protein, putative (DUF1995);(source:Araport11)
AT4G16162.5	protein_coding			Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT3G55890.4	protein_coding			Yippee family putative zinc-binding protein;(source:Araport11)
AT2G48020.3	protein_coding		Encodes a zinc transporter ZIF2. Expression of ZIF2 is regulated by alternative splicing.	Major facilitator superfamily protein;(source:Araport11)
AT3G44290.2	protein_coding			NAC domain containing protein 60;(source:Araport11)
AT1G08957.1	novel_transcribed_region			novel transcribed region; detected in root, root apical meristem, leaf, dark-grown seedling, light-grown seedling;(source:Araport11)
AT1G03770.6	protein_coding		Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.	RING 1B;(source:Araport11)
AT5G09370.3	protein_coding			Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11)
AT5G48620.4	protein_coding			Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
AT1G62860.2	pseudogene		pseudogene of pentatricopeptide (PPR) repeat-containing protein	pseudogene of Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
AT2G07810.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G06525.1	long_noncoding_rna			None;(source:Araport11)
AT3G04325.1	long_noncoding_rna			None;(source:Araport11)
AT5G08570.2	protein_coding			Pyruvate kinase family protein;(source:Araport11)
AT4G36020.3	protein_coding		Encodes a cold shock domain protein. Involved in cold acclimation by blocking the secondary structure of mRNA which in turn facilitates translation at cold temperature.	cold shock domain protein 1;(source:Araport11)
AT4G20050.5	protein_coding		Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.	Pectin lyase-like superfamily protein;(source:Araport11)
AT5G40910.8	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT4G09635.1	long_noncoding_rna			None;(source:Araport11)
AT5G40910.4	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G40910.5	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT1G07743.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G51402;(source:Araport11)
AT2G31580.5	protein_coding		ICA1 is a nuclear localized member of the tRNA(His) guanylyl transferase superfamily. Loss of function alleles show increased sensitivity to growth at high temperatures defects in cell cycle progression and DNA repair.	tRNAHis guanylyltransferase;(source:Araport11)
AT3G51540.4	protein_coding			mucin-5AC-like protein;(source:Araport11)
AT4G05170.4	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G51540.2	protein_coding			mucin-5AC-like protein;(source:Araport11)
AT2G26470.2	protein_coding			embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein;(source:Araport11)
AT1G20830.2	protein_coding		Encodes MCD1 (MULTIPLE CHLOROPLAST DIVISION SITE 1).  Determines the site of chloroplast division in concert with MinD (AT5G24020).	multiple chloroplast division site 1;(source:Araport11)
AT1G56670.2	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT3G56320.4	protein_coding			PAP/OAS1 substrate-binding domain superfamily;(source:Araport11)
AT1G09857.1	long_noncoding_rna			None;(source:Araport11)
AT4G15460.2	protein_coding			glycine-rich protein;(source:Araport11)
AT4G15460.4	protein_coding			glycine-rich protein;(source:Araport11)
AT3G10490.4	protein_coding		Encodes a NAC transcription factor that physically associates with the histone H3K4 demethylase JMJ14 and through that association is involved in transcriptional repression and flowering time control.	NAC domain containing protein 52;(source:Araport11)
AT4G19390.2	protein_coding			Uncharacterized protein family (UPF0114);(source:Araport11)
AT3G07160.2	protein_coding		Encodes GSL10, a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose.  GSL10 is required for male gametophyte development and plant growth.  Has a role in entry of microspores into mitosis.  GSL10 mutation leads to perturbation of microspore division symmetry, irregular callose deposition and failure of generative cell engulfment by the vegetative cell cytoplasm.  Also refer to GSL8 (At2g36850).	glucan synthase-like 10;(source:Araport11)
AT4G01230.2	protein_coding			Reticulon family protein;(source:Araport11)
AT5G00675.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G61700.4	protein_coding			ABC2 homolog 16;(source:Araport11)
AT5G07585.1	long_noncoding_rna			None;(source:Araport11)
AT5G22420.7	protein_coding			fatty acid reductase 7;(source:Araport11)
AT5G05015.1	long_noncoding_rna			None;(source:Araport11)
AT2G08995.1	long_noncoding_rna			None;(source:Araport11)
AT4G15215.3	protein_coding			pleiotropic drug resistance 13;(source:Araport11)
AT1G05790.4	protein_coding			lipase class 3 family protein;(source:Araport11)
AT2G04475.1	novel_transcribed_region			novel transcribed region; detected in flower, pollen;(source:Araport11)
AT1G09755.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09755.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G27065.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G11880.4	protein_coding			transmembrane protein, putative (Protein of unknown function DUF2359, transmembrane);(source:Araport11)
AT4G37435.1	protein_coding			MADS-box transcription factor-like protein;(source:Araport11)
AT3G11880.3	protein_coding			transmembrane protein, putative (Protein of unknown function DUF2359, transmembrane);(source:Araport11)
AT1G09847.1	long_noncoding_rna			None;(source:Araport11)
AT1G23090.4	protein_coding		Encodes AST91 mRNA for sulfate transporter.	sulfate transporter 91;(source:Araport11)
AT3G58050.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G28815.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G16120.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT2G41178.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G41180;(source:Araport11)
AT2G03140.6	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G53340.4	protein_coding			nuclear factor Y, subunit B10;(source:Araport11)
AT5G66780.2	protein_coding			late embryogenesis abundant protein;(source:Araport11)
AT2G26410.2	protein_coding		Member of IQ67 (CaM binding) domain containing family.	IQ-domain 4;(source:Araport11)
AT5G02735.1	long_noncoding_rna			None;(source:Araport11)
AT5G11030.6	protein_coding		alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.	aberrant root formation protein;(source:Araport11)
AT3G15354.2	protein_coding		Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain.  SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants.	SPA1-related 3;(source:Araport11)
AT4G07020.1	long_noncoding_rna			None;(source:Araport11)
AT1G63020.5	protein_coding		Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase IV; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for posttranscriptional gene silencing.	nuclear RNA polymerase D1A;(source:Araport11)
AT3G51390.2	protein_coding			DHHC-type zinc finger family protein;(source:Araport11)
AT4G05097.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G09023.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G68940;(source:Araport11)
AT1G09023.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G68940;(source:Araport11)
AT5G66810.3	protein_coding			Ran-binding protein in the microtubule-organising centre protein;(source:Araport11)
AT2G08825.1	long_noncoding_rna			None;(source:Araport11)
AT1G18750.5	protein_coding		Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.	AGAMOUS-like 65;(source:Araport11)
AT5G66810.4	protein_coding			Ran-binding protein in the microtubule-organising centre protein;(source:Araport11)
AT5G58840.2	protein_coding			Subtilase family protein;(source:Araport11)
AT5G01805.1	long_noncoding_rna			None;(source:Araport11)
AT1G14650.3	protein_coding			SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein;(source:Araport11)
AT3G04265.1	long_noncoding_rna			None;(source:Araport11)
AT2G34390.3	protein_coding		aquaporin NIP2.1	NOD26-like intrinsic protein 2;(source:Araport11)
AT3G01050.2	protein_coding			membrane-anchored ubiquitin-fold protein 1 precursor;(source:Araport11)
AT5G08135.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G54170;(source:Araport11)
AT2G30424.3	protein_coding		In a tandem repeat with AT2g30432 (TCL1) and AT2g30420 (ETC2), it encodes a single-repeat R3 MYB transcription factor that is involved in the negative regulation of trichome formation.	Homeodomain-like superfamily protein;(source:Araport11)
AT3G04245.1	long_noncoding_rna			None;(source:Araport11)
AT5G49290.3	protein_coding			receptor like protein 56;(source:Araport11)
AT5G49290.6	protein_coding			receptor like protein 56;(source:Araport11)
AT5G49290.7	protein_coding			receptor like protein 56;(source:Araport11)
AT5G17270.2	protein_coding			Protein prenylyltransferase superfamily protein;(source:Araport11)
AT3G54780.5	protein_coding			Zinc finger (C3HC4-type RING finger) family protein;(source:Araport11)
AT2G38120.2	protein_coding		Encodes an auxin influx transporter.  AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types.  AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.  Shoot supplied ammonium targets AUX1 and inhibits lateral root emergence.The mRNA is cell-to-cell mobile.	Transmembrane amino acid transporter family protein;(source:Araport11)
AT3G04275.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G22480;(source:Araport11)
AT2G11225.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G29375.3	protein_coding			XH domain-containing protein;(source:Araport11)
AT3G20290.3	protein_coding		Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520).	EPS15 homology domain 1;(source:Araport11)
AT1G15625.1	protein_coding			E3 ubiquitin-protein ligase;(source:Araport11)
AT5G67240.3	protein_coding			small RNA degrading nuclease 3;(source:Araport11)
AT5G25320.3	protein_coding			ACT-like superfamily protein;(source:Araport11)
AT4G06850.1	long_noncoding_rna			None;(source:Araport11)
AT1G02010.3	protein_coding		member of KEULE Gene Family	secretory 1A;(source:Araport11)
AT1G06177.1	long_noncoding_rna			None;(source:Araport11)
AT1G09047.1	long_noncoding_rna			None;(source:Araport11)
AT5G06350.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT3G20280.3	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G20280.4	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT3G20280.5	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G08855.1	miRNA_primary_transcript			microRNA ath-MIR1886 precursor;(source:Araport11)
AT1G09045.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G28580.6	protein_coding			transmembrane protein, putative (DUF247);(source:Araport11)
AT1G09045.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G42880.uORF1	uORF			Derives_from AT2G42880;(source:Araport11)
AT1G05667.1	long_noncoding_rna			None;(source:Araport11)
AT5G04405.1	long_noncoding_rna			None;(source:Araport11)
AT3G02205.1	small_nucleolar_rna			None;(source:Araport11)
AT1G05993.1	small_nucleolar_rna			None;(source:Araport11)
AT5G09335.1	long_noncoding_rna			None;(source:Araport11)
AT5G13690.2	protein_coding		Encodes an enzyme that is predicted to act as an alpha-N-acetylglucosaminidase (NAGLU). An naglu mutant arrests early in seed development but does not appear to have male or female gametophytic defects. Transcript levels for this gene are increased during reproductive development.	alpha-N-acetylglucosaminidase family / NAGLU family;(source:Araport11)
AT4G35810.2	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT2G04905.1	long_noncoding_rna			None;(source:Araport11)
AT1G04783.1	long_noncoding_rna			None;(source:Araport11)
AT3G26130.2	protein_coding			Cellulase (glycosyl hydrolase family 5) protein;(source:Araport11)
AT1G07337.1	long_noncoding_rna			None;(source:Araport11)
AT1G54020.5	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G54020.4	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G09615.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G28620.2	pseudogene			pseudogene of GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G28620.3	pseudogene			pseudogene of GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G41120.2	protein_coding			Esterase/lipase/thioesterase family protein;(source:Araport11)
AT5G41120.3	protein_coding			Esterase/lipase/thioesterase family protein;(source:Araport11)
AT2G06435.1	long_noncoding_rna			None;(source:Araport11)
AT1G17300.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G28620.4	pseudogene			pseudogene of GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G60830.2	protein_coding			RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G18905.1	protein_coding			F-box/associated interaction domain protein;(source:Araport11)
AT4G19975.1	protein_coding			nucleotide-diphospho-sugar transferase family protein;(source:Araport11)
AT4G07345.1	long_noncoding_rna			None;(source:Araport11)
AT2G43200.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT1G54030.2	protein_coding		Encodes a vacuolar protein.  Mutation causes organizational defects in the endoplasmic reticulum and aberrant protein trafficking in the plant secretory pathway.The mRNA is cell-to-cell mobile.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT5G03385.1	long_noncoding_rna			None;(source:Araport11)
AT2G33205.8	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT2G33205.9	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT2G33205.6	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT3G13790.3	protein_coding		Encodes a protein with invertase activity.	Glycosyl hydrolases family 32 protein;(source:Araport11)
AT2G33205.4	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT2G33205.5	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT2G33205.2	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT2G33205.3	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT4G08855.1	long_noncoding_rna			None;(source:Araport11)
AT3G13790.5	protein_coding		Encodes a protein with invertase activity.	Glycosyl hydrolases family 32 protein;(source:Araport11)
AT3G47350.3	protein_coding		Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include:   At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463).  Two copies of HSD1 and HSD4 exist due to a gene duplication event.  In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.	hydroxysteroid dehydrogenase 2;(source:Araport11)
AT2G07035.1	long_noncoding_rna			None;(source:Araport11)
AT4G09160.3	protein_coding		PATLs belong to a family of proteins having a Golgi dynamics (GOLD) domain in tandem with the Sec14p-like domain. PATLs are auxin regulated. Quadruple mutants (patl2456)  show altered PIN1 lateralization in root endodermis cells.	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein;(source:Araport11)
AT4G09160.2	protein_coding		PATLs belong to a family of proteins having a Golgi dynamics (GOLD) domain in tandem with the Sec14p-like domain. PATLs are auxin regulated. Quadruple mutants (patl2456)  show altered PIN1 lateralization in root endodermis cells.	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein;(source:Araport11)
AT3G03500.2	protein_coding			TatD related DNase;(source:Araport11)
AT3G03500.3	protein_coding			TatD related DNase;(source:Araport11)
AT4G32790.2	protein_coding			Exostosin family protein;(source:Araport11)
AT2G36460.3	protein_coding			Aldolase superfamily protein;(source:Araport11)
AT2G18100.3	protein_coding			transmembrane/coiled-coil protein (DUF726);(source:Araport11)
AT2G18100.2	protein_coding			transmembrane/coiled-coil protein (DUF726);(source:Araport11)
AT3G01920.2	protein_coding			DHBP synthase RibB-like alpha/beta domain-containing protein;(source:Araport11)
AT4G29380.2	protein_coding		The gene encodes phosphatidylinositol 3-  kinase involved in the development and germination of pollen through the biosynthesis of phosphatidylinositol 3-phosphate (PI3P).The mRNA is cell-to-cell mobile.	protein kinase family protein / WD-40 repeat family protein;(source:Araport11)
AT1G09607.1	long_noncoding_rna			None;(source:Araport11)
AT1G08103.1	long_noncoding_rna			None;(source:Araport11)
AT1G04947.1	long_noncoding_rna			None;(source:Araport11)
AT5G07875.1	miRNA_primary_transcript			microRNA ath-MIR4245 precursor;(source:Araport11)
AT3G52110.3	protein_coding			interferon-activable protein;(source:Araport11)
AT1G59520.6	protein_coding		Encodes CW7.	CW7;(source:Araport11)
AT2G29060.2	protein_coding			GRAS family transcription factor;(source:Araport11)
AT3G52110.4	protein_coding			interferon-activable protein;(source:Araport11)
AT1G05433.1	small_nucleolar_rna			None;(source:Araport11)
AT1G09617.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G76350;(source:Araport11)
AT3G04555.1	long_noncoding_rna			None;(source:Araport11)
AT1G26260.5	protein_coding		Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix).  Related to CIB1 (AT4G34530).  CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.	cryptochrome-interacting basic-helix-loop-helix 5;(source:Araport11)
AT1G26260.6	protein_coding		Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix).  Related to CIB1 (AT4G34530).  CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.	cryptochrome-interacting basic-helix-loop-helix 5;(source:Araport11)
AT4G03355.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G79590.3	protein_coding		Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.	syntaxin of plants 52;(source:Araport11)
AT1G77410.3	protein_coding			beta-galactosidase 16;(source:Araport11)
AT4G03355.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G77410.4	protein_coding			beta-galactosidase 16;(source:Araport11)
AT2G33051.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33050;(source:Araport11)
AT2G33051.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33050;(source:Araport11)
AT4G40085.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G40080;(source:Araport11)
AT2G33051.7	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33050;(source:Araport11)
AT2G33051.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33050;(source:Araport11)
AT2G33051.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33050;(source:Araport11)
AT2G33051.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G33050;(source:Araport11)
AT3G07315.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G45980;(source:Araport11)
AT2G00910.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G25750.2	protein_coding			F-box SKIP23-like protein (DUF295);(source:Araport11)
AT5G06245.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G41870;(source:Araport11)
AT3G03715.1	long_noncoding_rna			None;(source:Araport11)
AT5G07920.2	protein_coding		Encodes a putative diacylglycerol kinase that is mainly expressed in roots, shoots and leaves, but its enzyme product was not active in vitro.	diacylglycerol kinase1;(source:Araport11)
AT5G41560.2	protein_coding		Encodes a substrate receptor for CRL4-CDD complexes that provides substrate specificity for CRL4 by interacting with ubiquitination targets. By its interaction and regulation of levels of PYL8 through proteasomal degradation, it negatively regulates ABA-mediated developmental responses, including inhibition of seed germination, seedling establishment, and root growth	DET1 complexing ubiquitin ligase;(source:Araport11)
AT4G28485.2	protein_coding		The structure of this gene is mis-annotated in TAIR10. Please refer to PMID:20712629 and the Comment field on the TAIR locus page for revised annotation.	transmembrane protein, putative (DUF679 domain membrane protein 7);(source:Araport11)
AT5G27750.2	protein_coding			F-box/FBD-like domains containing protein;(source:Araport11)
AT5G40405.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G15540.3	protein_coding			2-oxoglutarate-dependent dioxygenase-like protein;(source:Araport11)
AT1G15540.2	protein_coding			2-oxoglutarate-dependent dioxygenase-like protein;(source:Araport11)
AT2G04985.1	long_noncoding_rna			None;(source:Araport11)
AT3G52340.6	protein_coding		sucrose-phosphatase (SPP2)	sucrose-6F-phosphate phosphohydrolase 2;(source:Araport11)
AT1G73860.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT3G04680.3	protein_coding		Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.	CLP-similar protein 3;(source:Araport11)
AT1G01690.2	protein_coding		Encodes a novel plant-specific protein that is involved in meiotic double strand break formation.	putative recombination initiation defects 3;(source:Araport11)
AT1G01690.3	protein_coding		Encodes a novel plant-specific protein that is involved in meiotic double strand break formation.	putative recombination initiation defects 3;(source:Araport11)
AT5G00775.1	long_noncoding_rna			None;(source:Araport11)
AT1G05377.1	long_noncoding_rna			None;(source:Araport11)
AT2G46320.4	protein_coding			Mitochondrial substrate carrier family protein;(source:Araport11)
AT3G57410.10	protein_coding		Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.	villin 3;(source:Araport11)
AT1G07937.1	long_noncoding_rna			None;(source:Araport11)
AT1G03660.2	protein_coding			Ankyrin-repeat containing protein;(source:Araport11)
AT2G46340.2	protein_coding		Encodes a member of the SPA (suppressor of phyA-105) protein family  (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light.	SPA (suppressor of phyA-105) protein family;(source:Araport11)
AT5G20660.3	protein_coding			Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT5G20660.4	protein_coding			Zn-dependent exopeptidases superfamily protein;(source:Araport11)
AT3G19040.2	protein_coding		Encodes a protein similar to TATA-binding protein-associated factor TAF1 (a.k.a. TAFII250) with histone acetyltransferase activity.  It is required in integrating light signals to regulate gene expression and growth.	histone acetyltransferase of the TAFII250 family 2;(source:Araport11)
AT1G12260.2	protein_coding		Encodes a NAC-domain transcription factor that is expressed in developing xylem. Over expression of this protein causes ectopic secondary cell wall growth. Complements some of the cell wall defects seen in SND1/NST1 double mutants.	NAC 007;(source:Araport11)
AT2G39240.2	protein_coding			RNA polymerase I specific transcription initiation factor RRN3 protein;(source:Araport11)
AT4G12000.2	protein_coding			SNARE associated Golgi protein family;(source:Araport11)
AT4G12000.3	protein_coding			SNARE associated Golgi protein family;(source:Araport11)
AT2G04355.1	long_noncoding_rna			None;(source:Araport11)
AT1G66460.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT1G07927.1	long_noncoding_rna			None;(source:Araport11)
AT2G18180.5	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G21400.6	protein_coding			Thiamin diphosphate-binding fold (THDP-binding) superfamily protein;(source:Araport11)
AT2G18180.3	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT2G26310.5	protein_coding		Encodes a plastid stroma localized fatty acid binding protein.	Chalcone-flavanone isomerase family protein;(source:Araport11)
AT2G26310.4	protein_coding		Encodes a plastid stroma localized fatty acid binding protein.	Chalcone-flavanone isomerase family protein;(source:Araport11)
AT4G17310.9	protein_coding			hypothetical protein;(source:Araport11)
AT4G01830.2	protein_coding			P-glycoprotein 5;(source:Araport11)
AT1G09710.5	protein_coding		Paralog of DRMY1 with unknown function.	Homeodomain-like superfamily protein;(source:Araport11)
AT1G76510.4	protein_coding			ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT3G54625.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G54630;(source:Araport11)
AT3G54625.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G54630;(source:Araport11)
AT3G09425.1	long_noncoding_rna			None;(source:Araport11)
AT4G17310.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G08430.1	long_noncoding_rna			None;(source:Araport11)
AT4G17310.5	protein_coding			hypothetical protein;(source:Araport11)
AT5G10700.2	protein_coding			Peptidyl-tRNA hydrolase II (PTH2) family protein;(source:Araport11)
AT5G04985.1	miRNA_primary_transcript			microRNA ath-MIR854c precursor;(source:Araport11)
AT2G38695.4	protein_coding			Gag-Pol polyprotein/retrotransposon;(source:Araport11)
AT1G04850.2	protein_coding			ubiquitin-associated (UBA)/TS-N domain-containing protein;(source:Araport11)
AT3G15750.2	protein_coding			Essential protein Yae1, N-terminal;(source:Araport11)
AT3G15750.3	protein_coding			Essential protein Yae1, N-terminal;(source:Araport11)
AT4G06415.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G16680;(source:Araport11)
AT2G08410.1	long_noncoding_rna			None;(source:Araport11)
AT3G54510.3	protein_coding			Early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT1G16190.2	protein_coding		Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.	Rad23 UV excision repair protein family;(source:Araport11)
AT1G61670.2	protein_coding			Lung seven transmembrane receptor family protein;(source:Araport11)
AT3G54510.4	protein_coding			Early-responsive to dehydration stress protein (ERD4);(source:Araport11)
AT3G46658.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G46660;(source:Araport11)
AT4G37225.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G37230;(source:Araport11)
AT4G08565.1	long_noncoding_rna			None;(source:Araport11)
AT1G04933.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G12150;(source:Araport11)
AT1G04933.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G12150;(source:Araport11)
AT5G14210.2	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G14210.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G48100.8	protein_coding			Exonuclease family protein;(source:Araport11)
AT1G29200.4	protein_coding			O-fucosyltransferase family protein;(source:Araport11)
AT2G48100.7	protein_coding			Exonuclease family protein;(source:Araport11)
AT2G48100.5	protein_coding			Exonuclease family protein;(source:Araport11)
AT3G07805.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G47730;(source:Araport11)
AT2G08250.1	long_noncoding_rna			None;(source:Araport11)
AT3G03095.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G15352;(source:Araport11)
AT2G07565.1	protein_coding			Ycf1 domain protein;(source:Araport11)
AT2G06305.1	long_noncoding_rna			None;(source:Araport11)
AT3G06920.3	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G06920.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT1G51720.4	protein_coding			Amino acid dehydrogenase family protein;(source:Araport11)
AT1G51720.3	protein_coding			Amino acid dehydrogenase family protein;(source:Araport11)
AT1G51720.2	protein_coding			Amino acid dehydrogenase family protein;(source:Araport11)
AT1G09835.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G06445.1	long_noncoding_rna			None;(source:Araport11)
AT2G21170.3	protein_coding		Encodes a plastidic triose phosphate isomerase. Mutants with reduced pdTPI levels have difficulty transitioning from heterotrophic to autotrophic growth. The related phenotypes, such as chlorosis in light-grown seedlings may result from an accumulation of dihydroxyacetone phosphate (DHAP) and methylglyoxal (MG) in these mutants. Both splice variants appear to be expressed, but the At2g21170.2 variant appears to have a much narrower expression range limited to roots.	triosephosphate isomerase;(source:Araport11)
AT5G12440.9	protein_coding			CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT5G08895.1	long_noncoding_rna			None;(source:Araport11)
AT5G41350.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G41350.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G36850.2	protein_coding			PQ-loop repeat family protein / transmembrane family protein;(source:Araport11)
AT1G72210.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G12440.7	protein_coding			CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT5G12440.6	protein_coding			CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT5G12440.5	protein_coding			CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT5G12440.4	protein_coding			CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11)
AT3G06590.3	protein_coding		Encodes RITF1, a bHLH transcription factor that regulates the transcription of several genes involved in the detoxification of reactive oxygen species generated by salt stress.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT1G07480.3	protein_coding			Transcription factor IIA, alpha/beta subunit;(source:Araport11)
AT2G33685.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G00360.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G06495.1	long_noncoding_rna			None;(source:Araport11)
AT1G77860.2	protein_coding		Mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane Protein	Rhomboid-related intramembrane serine protease family protein;(source:Araport11)
AT2G00360.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G15790.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G06373.1	long_noncoding_rna			None;(source:Araport11)
AT5G15790.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G15790.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT1G77800.3	protein_coding			PHD finger family protein;(source:Araport11)
AT1G77800.6	protein_coding			PHD finger family protein;(source:Araport11)
AT1G77800.7	protein_coding			PHD finger family protein;(source:Araport11)
AT3G06465.1	long_noncoding_rna			None;(source:Araport11)
AT1G77800.5	protein_coding			PHD finger family protein;(source:Araport11)
AT1G64100.3	protein_coding			pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT4G22570.2	protein_coding		Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher affinity for zeatin, isopentenyladenine and benzyladenine than APT1 but lower Vmax than APT1.	adenine phosphoribosyl transferase 3;(source:Araport11)
AT4G27050.5	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT2G30500.3	protein_coding			Kinase interacting (KIP1-like) family protein;(source:Araport11)
AT1G52310.2	protein_coding			protein kinase family protein / C-type lectin domain-containing protein;(source:Araport11)
AT1G06307.1	long_noncoding_rna			None;(source:Araport11)
AT2G06935.1	long_noncoding_rna			None;(source:Araport11)
AT5G48710.4	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT3G01210.2	protein_coding		ACD11 binding partner, may be involved in negative regulation of  ROS-mediated defense response.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G48710.3	protein_coding			Ubiquitin-like superfamily protein;(source:Araport11)
AT5G09710.3	pseudogene			None;(source:Araport11)
AT1G18197.1	protein_coding			GCK domain protein;(source:Araport11)
AT3G04095.1	long_noncoding_rna			None;(source:Araport11)
AT5G65890.4	protein_coding		Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques.	ACT domain repeat 1;(source:Araport11)
AT3G09685.1	long_noncoding_rna			None;(source:Araport11)
AT2G06005.4	protein_coding		Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060.  FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time.	FRIGIDA interacting protein 1;(source:Araport11)
AT2G06005.5	protein_coding		Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060.  FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time.	FRIGIDA interacting protein 1;(source:Araport11)
AT2G06005.6	protein_coding		Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060.  FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time.	FRIGIDA interacting protein 1;(source:Araport11)
AT5G04385.1	long_noncoding_rna			None;(source:Araport11)
AT4G33540.2	protein_coding			metallo-beta-lactamase family protein;(source:Araport11)
AT4G33540.3	protein_coding			metallo-beta-lactamase family protein;(source:Araport11)
AT2G06005.3	protein_coding		Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060.  FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time.	FRIGIDA interacting protein 1;(source:Araport11)
AT2G05205.1	long_noncoding_rna			None;(source:Araport11)
AT4G16765.4	protein_coding			2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G44530.4	protein_coding		Encodes a nuclear localized WD-repeat containing protein involved in negative regulation of knox gene expression via epigenetic mechanism of chromatin re-organization. It is a part of the HISTONE REGULATOR complex that deposits histones in a DNA synthesis-independent manner and affects both nucleosome occupancy and the maintenance of transcriptional silencing. Interacts physically and genetically with AS1. Expressed in meristem and leaf primordia. Homozygous mutants are embryo lethal. Phenotype of cosuppressed lines is variable but show effects on leaf development similar to as1/as2.	histone chaperone HIRA-like protein;(source:Araport11)
AT1G09437.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G74360;(source:Araport11)
AT4G05485.1	long_noncoding_rna			None;(source:Araport11)
AT5G05315.1	miRNA_primary_transcript			microRNA ath-MIR5638b precursor;(source:Araport11)
AT3G49260.4	protein_coding			IQ-domain 21;(source:Araport11)
AT3G44510.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G44510.4	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT3G44510.5	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G26220.2	protein_coding			ChaC-like family protein;(source:Araport11)
AT1G69070.2	protein_coding			nucleolar-like protein;(source:Araport11)
AT5G26240.2	protein_coding		Anion channel protein family member. Involved in negative regulation of pattern triggered immunity.	chloride channel D;(source:Araport11)
AT1G07557.1	long_noncoding_rna			None;(source:Araport11)
AT1G23201.2	protein_coding			GCK domain protein;(source:Araport11)
AT3G18040.5	protein_coding		Encodes a protein with similarity to MAP kinases (MAPK9).Expressed preferentially in guard cells and appears to be involved in reactive oxygen species mediated ABA signaling.	MAP kinase 9;(source:Araport11)
AT3G18040.4	protein_coding		Encodes a protein with similarity to MAP kinases (MAPK9).Expressed preferentially in guard cells and appears to be involved in reactive oxygen species mediated ABA signaling.	MAP kinase 9;(source:Araport11)
AT1G72770.5	protein_coding		mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C; regulates the activation of the Snf1-related kinase OST1 by abscisic acid.The mRNA is cell-to-cell mobile.	HYPERSENSITIVE TO ABA1;(source:Araport11)
AT1G16820.3	protein_coding			vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein;(source:Araport11)
AT1G72770.4	protein_coding		mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C; regulates the activation of the Snf1-related kinase OST1 by abscisic acid.The mRNA is cell-to-cell mobile.	HYPERSENSITIVE TO ABA1;(source:Araport11)
AT4G05200.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 25;(source:Araport11)
AT3G09045.1	long_noncoding_rna			None;(source:Araport11)
AT1G07700.4	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT5G58450.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT4G25719.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G25720;(source:Araport11)
AT3G02950.2	protein_coding		Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors.  Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.	Tho complex subunit 7/Mft1p;(source:Araport11)
AT4G26140.9	protein_coding		putative beta-galactosidase	beta-galactosidase 12;(source:Araport11)
AT3G10650.2	protein_coding		Encodes a nucleoporin involved in mRNA export from the nucleus.  It is also involved in the regulation of nuclear morphology.	nuclear pore complex protein;(source:Araport11)
AT4G26140.5	protein_coding		putative beta-galactosidase	beta-galactosidase 12;(source:Araport11)
AT4G26140.6	protein_coding		putative beta-galactosidase	beta-galactosidase 12;(source:Araport11)
AT4G26140.7	protein_coding		putative beta-galactosidase	beta-galactosidase 12;(source:Araport11)
AT4G06865.1	miRNA_primary_transcript			microRNA ath-MIR5661 precursor;(source:Araport11)
AT4G26140.3	protein_coding		putative beta-galactosidase	beta-galactosidase 12;(source:Araport11)
AT3G04595.1	long_noncoding_rna			None;(source:Araport11)
AT2G15040.3	pseudogene			pseudogene of receptor like protein 53;(source:Araport11)
AT2G15040.2	pseudogene			pseudogene of receptor like protein 53;(source:Araport11)
AT4G17370.2	protein_coding			Oxidoreductase family protein;(source:Araport11)
AT5G03015.1	long_noncoding_rna			None;(source:Araport11)
AT1G09427.1	long_noncoding_rna			None;(source:Araport11)
AT1G80000.4	protein_coding			CASC3/Barentsz eIF4AIII binding protein;(source:Araport11)
AT1G05950.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G05117.1	long_noncoding_rna			None;(source:Araport11)
AT1G05950.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G05950.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G33820.3	protein_coding		encodes a mitochondrial ornithine transporter which exports ornithine from the mitochondrion to the cytosol	Mitochondrial substrate carrier family protein;(source:Araport11)
AT2G33820.2	protein_coding		encodes a mitochondrial ornithine transporter which exports ornithine from the mitochondrion to the cytosol	Mitochondrial substrate carrier family protein;(source:Araport11)
AT1G47570.3	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G06870.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G19100;(source:Araport11)
AT5G13740.2	protein_coding		Encodes ZIF1 (ZINC-INDUCED FACILITATOR1), a member of the Major Facilitator Superfamily (MFS) of membrane proteins which are found in all organisms and transport a wide range of small, organic molecules. Involved in a mechanism of Zn sequestration, possibly by transport of a Zn ligand or Zn-ligand complex into vacuoles.The mRNA is cell-to-cell mobile.	zinc induced facilitator 1;(source:Araport11)
AT1G11870.4	protein_coding		Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	Seryl-tRNA synthetase;(source:Araport11)
AT2G47000.6	protein_coding		Encodes an auxin efflux transmembrane transporter that is a member of the multidrug resistance  P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal  redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above and is involved in root hair elongation.	ATP binding cassette subfamily B4;(source:Araport11)
AT2G47000.7	protein_coding		Encodes an auxin efflux transmembrane transporter that is a member of the multidrug resistance  P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal  redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above and is involved in root hair elongation.	ATP binding cassette subfamily B4;(source:Araport11)
AT2G47000.4	protein_coding		Encodes an auxin efflux transmembrane transporter that is a member of the multidrug resistance  P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal  redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above and is involved in root hair elongation.	ATP binding cassette subfamily B4;(source:Araport11)
AT2G47000.5	protein_coding		Encodes an auxin efflux transmembrane transporter that is a member of the multidrug resistance  P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal  redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above and is involved in root hair elongation.	ATP binding cassette subfamily B4;(source:Araport11)
AT2G47000.2	protein_coding		Encodes an auxin efflux transmembrane transporter that is a member of the multidrug resistance  P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal  redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above and is involved in root hair elongation.	ATP binding cassette subfamily B4;(source:Araport11)
AT5G13750.4	protein_coding			zinc induced facilitator-like 1;(source:Araport11)
AT2G14095.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G49580.2	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT5G49580.3	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT2G02480.2	protein_coding		STICHEL mutant shows trichomes with fewer than normal branches.	AAA-type ATPase family protein;(source:Araport11)
AT3G07415.1	long_noncoding_rna			None;(source:Araport11)
AT5G48655.4	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT4G33050.6	protein_coding		Encodes a calmodulin-binding protein involved in stomatal movement.	calmodulin-binding family protein;(source:Araport11)
AT4G04015.1	long_noncoding_rna			None;(source:Araport11)
AT1G68862.3	protein_coding			transmembrane protein;(source:Araport11)
AT1G74200.3	protein_coding			receptor like protein 16;(source:Araport11)
AT3G09605.1	long_noncoding_rna			None;(source:Araport11)
AT3G22290.2	protein_coding			Endoplasmic reticulum vesicle transporter protein;(source:Araport11)
AT5G05805.1	long_noncoding_rna			None;(source:Araport11)
AT2G43080.2	protein_coding		Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline),the collagen model peptide (Pro-Pro-Gly)10 and  other proline rich peptides.	P4H isoform 1;(source:Araport11)
AT2G38630.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G38630.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G65560.2	protein_coding			Zinc-binding dehydrogenase family protein;(source:Araport11)
AT2G38620.4	protein_coding		Encodes a member of a plant specific family of cyclin dependent kinases.	cyclin-dependent kinase B1;(source:Araport11)
AT1G30280.3	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT1G06413.1	long_noncoding_rna			None;(source:Araport11)
AT5G42140.2	protein_coding			Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein;(source:Araport11)
AT2G38620.3	protein_coding		Encodes a member of a plant specific family of cyclin dependent kinases.	cyclin-dependent kinase B1;(source:Araport11)
AT5G02345.1	long_noncoding_rna			None;(source:Araport11)
AT5G24760.4	protein_coding			GroES-like zinc-binding dehydrogenase family protein;(source:Araport11)
AT5G53420.5	protein_coding			CCT motif family protein;(source:Araport11)
AT4G32630.6	protein_coding			ArfGap/RecO-like zinc finger domain-containing protein;(source:Araport11)
AT3G48060.2	protein_coding			BAH and TFIIS domain-containing protein;(source:Araport11)
AT3G48060.3	protein_coding			BAH and TFIIS domain-containing protein;(source:Araport11)
AT1G49600.3	protein_coding			RNA-binding protein 47A;(source:Araport11)
AT3G02195.1	long_noncoding_rna			None;(source:Araport11)
AT4G09945.1	long_noncoding_rna			None;(source:Araport11)
AT3G17360.2	protein_coding		PHRAGMOPLAST ORIENTING KINESIN 1 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK1 constructs were more limited than those for POK2; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls.	phragmoplast orienting kinesin 1;(source:Araport11)
AT5G04465.1	small_nuclear_rna			U4;(source:Araport11)
AT1G49620.3	protein_coding		Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Binds to D type cyclins and may inhibit cell cycle.	Cyclin-dependent kinase inhibitor family protein;(source:Araport11)
AT1G49620.2	protein_coding		Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Binds to D type cyclins and may inhibit cell cycle.	Cyclin-dependent kinase inhibitor family protein;(source:Araport11)
AT1G06757.1	long_noncoding_rna			None;(source:Araport11)
AT3G03340.2	protein_coding			LUC7 related protein;(source:Araport11)
AT3G03340.3	protein_coding			LUC7 related protein;(source:Araport11)
AT1G02120.3	protein_coding		Encodes VAD1 (Vascular Associated Death1), a regulator of cell death and defense responses in vascular tissues.  VAD1 is a putative membrane associated protein and contains a GRAM domain.  vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system.The mRNA is cell-to-cell mobile.	GRAM domain family protein;(source:Araport11)
AT1G02120.2	protein_coding		Encodes VAD1 (Vascular Associated Death1), a regulator of cell death and defense responses in vascular tissues.  VAD1 is a putative membrane associated protein and contains a GRAM domain.  vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system.The mRNA is cell-to-cell mobile.	GRAM domain family protein;(source:Araport11)
AT3G12640.3	protein_coding			RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G13677.3	protein_coding			hypothetical protein;(source:Araport11)
AT2G32150.2	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT2G32150.3	protein_coding			Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
AT1G01240.5	protein_coding			transmembrane protein;(source:Araport11)
AT3G12640.4	protein_coding			RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G11470.9	protein_coding			4-phosphopantetheinyl transferase superfamily;(source:Araport11)
AT5G28290.2	protein_coding		Encodes AtNek3, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.	NIMA-related kinase 3;(source:Araport11)
AT5G03625.1	long_noncoding_rna			None;(source:Araport11)
AT3G26820.2	protein_coding			Esterase/lipase/thioesterase family protein;(source:Araport11)
AT5G47130.2	protein_coding			Bax inhibitor-1 family protein;(source:Araport11)
AT1G69020.2	protein_coding			Prolyl oligopeptidase family protein;(source:Araport11)
AT3G22085.1	protein_coding			TRAF family protein;(source:Araport11)
AT3G11470.5	protein_coding			4-phosphopantetheinyl transferase superfamily;(source:Araport11)
AT1G08743.1	long_noncoding_rna			None;(source:Araport11)
AT1G09255.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G03855.1	long_noncoding_rna			None;(source:Araport11)
AT3G45040.3	protein_coding		Encodes a putative dolichol kinase that is localized to the endoplasmic reticulum and involved in pollen tube reception in the female gametophyte.	phosphatidate cytidylyltransferase family protein;(source:Araport11)
AT4G19900.2	protein_coding			alpha 1,4-glycosyltransferase family protein;(source:Araport11)
AT1G77080.11	protein_coding		MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT1G77080.12	protein_coding		MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.	K-box region and MADS-box transcription factor family protein;(source:Araport11)
AT3G06815.1	long_noncoding_rna			None;(source:Araport11)
AT3G22104.3	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT3G22104.2	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT1G26940.2	protein_coding			Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
AT4G28820.4	protein_coding			HIT-type Zinc finger family protein;(source:Araport11)
AT3G22104.4	protein_coding			Phototropic-responsive NPH3 family protein;(source:Araport11)
AT5G03270.2	protein_coding			lysine decarboxylase family protein;(source:Araport11)
AT5G06095.1	other_rna			None;(source:Araport11)
AT1G09105.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G08315.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G30662;(source:Araport11)
AT2G06025.2	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G06025.3	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G64584.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G06025.6	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G06025.4	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT2G06025.5	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT5G57230.2	protein_coding			Thioredoxin superfamily protein;(source:Araport11)
AT1G04717.1	long_noncoding_rna			None;(source:Araport11)
AT2G03060.3	protein_coding		Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.	AGAMOUS-like 30;(source:Araport11)
AT2G03060.4	protein_coding		Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.	AGAMOUS-like 30;(source:Araport11)
AT2G03060.5	protein_coding		Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.	AGAMOUS-like 30;(source:Araport11)
AT2G03060.6	protein_coding		Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.	AGAMOUS-like 30;(source:Araport11)
AT2G03060.7	protein_coding		Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.	AGAMOUS-like 30;(source:Araport11)
AT3G52072.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52070;(source:Araport11)
AT3G52072.7	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52070;(source:Araport11)
AT1G50410.4	protein_coding		Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG1.	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT3G52072.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G52070;(source:Araport11)
AT1G50410.2	protein_coding		Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG1.	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT1G50410.3	protein_coding		Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG1.	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
AT5G65720.3	protein_coding		Encodes a cysteine desulfurase whose activity is dependent on AtSufE activation. It requires pyridoxal phosphate (PLP) for proper folding.  Its catalytic efficiency is increase three-fold in the presence of AtFH (frataxin).	nitrogen fixation S (NIFS)-like 1;(source:Araport11)
AT3G04160.3	protein_coding			U11/U12 small nuclear ribonucleoprotein;(source:Araport11)
AT5G65740.6	protein_coding			zinc ion binding protein;(source:Araport11)
AT5G65740.7	protein_coding			zinc ion binding protein;(source:Araport11)
AT1G06747.1	long_noncoding_rna			None;(source:Araport11)
AT5G46510.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT3G51290.3	protein_coding			pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632);(source:Araport11)
AT3G06085.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G05440.9	protein_coding			GLYCINE RICH PROTEIN 9;(source:Araport11)
AT1G06763.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, pollen, aerial;(source:Araport11)
AT1G50000.5	protein_coding			methyltransferase;(source:Araport11)
AT1G50000.4	protein_coding			methyltransferase;(source:Araport11)
AT1G50000.3	protein_coding			methyltransferase;(source:Araport11)
AT3G08665.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G56460;(source:Araport11)
AT5G19110.2	protein_coding			Eukaryotic aspartyl protease family protein;(source:Araport11)
AT5G16630.3	protein_coding			DNA repair protein Rad4 family;(source:Araport11)
AT2G08335.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G29190;(source:Araport11)
AT3G09965.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G63470;(source:Araport11)
AT5G00950.1	long_noncoding_rna			None;(source:Araport11)
AT5G16650.2	protein_coding			Chaperone DnaJ-domain superfamily protein;(source:Araport11)
AT4G33000.6	protein_coding		Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	calcineurin B-like protein 10;(source:Araport11)
AT4G33000.5	protein_coding		Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	calcineurin B-like protein 10;(source:Araport11)
AT4G33000.4	protein_coding		Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	calcineurin B-like protein 10;(source:Araport11)
AT4G39270.8	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT1G10585.2	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G06595.1	long_noncoding_rna			None;(source:Araport11)
AT3G07555.1	long_noncoding_rna			None;(source:Araport11)
AT4G39270.3	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT2G19410.2	protein_coding			U-box domain-containing protein kinase family protein;(source:Araport11)
AT2G19410.3	protein_coding			U-box domain-containing protein kinase family protein;(source:Araport11)
AT4G40040.3	protein_coding			Histone superfamily protein;(source:Araport11)
AT4G39270.5	protein_coding			Leucine-rich repeat protein kinase family protein;(source:Araport11)
AT5G05180.3	protein_coding			myosin heavy chain, striated protein;(source:Araport11)
AT2G20570.3	protein_coding		Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.	GBFs pro-rich region-interacting factor 1;(source:Araport11)
AT2G24130.2	protein_coding			Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
AT5G51830.2	protein_coding		Encodes one of the several Arabidopsis fructokinases. Nomenclature according to Riggs 2017 has been adopted for the family by the community (personal communication, Boernke, Callis, Granot, Boernke, and Smeekens). Important for seed oil accumulation and vascular development.	pfkB-like carbohydrate kinase family protein;(source:Araport11)
AT3G52050.6	protein_coding			5-3 exonuclease family protein;(source:Araport11)
AT2G42640.4	protein_coding			Mitogen activated protein kinase kinase kinase-like protein;(source:Araport11)
AT2G42640.3	protein_coding			Mitogen activated protein kinase kinase kinase-like protein;(source:Araport11)
AT2G42640.2	protein_coding			Mitogen activated protein kinase kinase kinase-like protein;(source:Araport11)
AT3G13580.9	protein_coding			Ribosomal protein L30/L7 family protein;(source:Araport11)
AT3G13580.8	protein_coding			Ribosomal protein L30/L7 family protein;(source:Araport11)
AT3G13580.7	protein_coding			Ribosomal protein L30/L7 family protein;(source:Araport11)
AT3G13580.6	protein_coding			Ribosomal protein L30/L7 family protein;(source:Araport11)
AT3G13580.5	protein_coding			Ribosomal protein L30/L7 family protein;(source:Araport11)
AT5G58940.3	protein_coding		Arabidopsis thaliana calmodulin-binding receptor-like kinase mRNAThe mRNA is cell-to-cell mobile.	calmodulin-binding receptor-like cytoplasmic kinase 1;(source:Araport11)
AT5G58940.4	protein_coding		Arabidopsis thaliana calmodulin-binding receptor-like kinase mRNAThe mRNA is cell-to-cell mobile.	calmodulin-binding receptor-like cytoplasmic kinase 1;(source:Araport11)
AT3G52050.8	protein_coding			5-3 exonuclease family protein;(source:Araport11)
AT1G67700.4	protein_coding			multidrug resistance protein;(source:Araport11)
AT3G24605.1	protein_coding			late embryogenesis abundant protein, group 2;(source:Araport11)
AT1G56145.3	protein_coding			Leucine-rich repeat transmembrane protein kinase;(source:Araport11)
AT3G00550.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G05435.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G05430;(source:Araport11)
AT5G05435.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G05430;(source:Araport11)
AT3G07375.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G46290;(source:Araport11)
AT4G07390.2	protein_coding			Mannose-P-dolichol utilization defect 1 protein;(source:Araport11)
AT4G25590.2	protein_coding			actin depolymerizing factor 7;(source:Araport11)
AT4G14660.2	protein_coding		Non-catalytic subunit specific to DNA-directed RNA polymerase V; homologous to budding yeast RPB7	RNA polymerase Rpb7-like, N-terminal domain-containing protein;(source:Araport11)
AT4G14660.3	protein_coding		Non-catalytic subunit specific to DNA-directed RNA polymerase V; homologous to budding yeast RPB7	RNA polymerase Rpb7-like, N-terminal domain-containing protein;(source:Araport11)
AT2G24650.4	protein_coding			B3 domain-containing protein REM13;(source:Araport11)
AT1G06617.1	long_noncoding_rna			None;(source:Araport11)
AT2G24650.6	protein_coding			B3 domain-containing protein REM13;(source:Araport11)
AT5G05415.1	long_noncoding_rna			None;(source:Araport11)
AT3G04155.1	small_nucleolar_rna			None;(source:Araport11)
AT2G37680.2	protein_coding			glucose-induced degradation-like protein;(source:Araport11)
AT2G21105.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G03130.2	protein_coding			BRCT domain-containing DNA repair protein;(source:Araport11)
AT4G03130.3	protein_coding			BRCT domain-containing DNA repair protein;(source:Araport11)
AT5G10350.5	protein_coding		Encodes a nuclear-localized RNA recognition motif-containing protein that forms homodimers.  It interacts with telomere and non-telomere associated proteins. Null mutation does not result in changes in telomerase activity or telomere length.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G10350.4	protein_coding		Encodes a nuclear-localized RNA recognition motif-containing protein that forms homodimers.  It interacts with telomere and non-telomere associated proteins. Null mutation does not result in changes in telomerase activity or telomere length.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT2G04235.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G24080.4	protein_coding			KRR1 family protein;(source:Araport11)
AT3G44703.4	protein_coding			transmembrane protein;(source:Araport11)
AT3G44703.2	protein_coding			transmembrane protein;(source:Araport11)
AT3G44703.3	protein_coding			transmembrane protein;(source:Araport11)
AT4G02995.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G05005.1	long_noncoding_rna			None;(source:Araport11)
AT3G05965.1	long_noncoding_rna			None;(source:Araport11)
AT2G40815.2	protein_coding			Calcium-dependent lipid-binding (CaLB domain) family protein;(source:Araport11)
AT4G01593.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G01595;(source:Araport11)
AT5G05425.1	long_noncoding_rna			None;(source:Araport11)
AT4G08425.1	small_nucleolar_rna			None;(source:Araport11)
AT1G80650.3	protein_coding			RNAse THREE-like protein 1;(source:Araport11)
AT1G80650.2	protein_coding			RNAse THREE-like protein 1;(source:Araport11)
AT1G80650.4	protein_coding			RNAse THREE-like protein 1;(source:Araport11)
AT4G04825.1	miRNA_primary_transcript			microRNA ath-MIR3932a precursor;(source:Araport11)
AT5G53310.2	protein_coding			myosin heavy chain-like protein;(source:Araport11)
AT1G01220.8	protein_coding		Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.	L-fucokinase/GDP-L-fucose pyrophosphorylase;(source:Araport11)
AT1G01220.3	protein_coding		Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.	L-fucokinase/GDP-L-fucose pyrophosphorylase;(source:Araport11)
AT1G01220.2	protein_coding		Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.	L-fucokinase/GDP-L-fucose pyrophosphorylase;(source:Araport11)
AT1G01220.7	protein_coding		Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.	L-fucokinase/GDP-L-fucose pyrophosphorylase;(source:Araport11)
AT1G01220.6	protein_coding		Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.	L-fucokinase/GDP-L-fucose pyrophosphorylase;(source:Araport11)
AT1G01220.5	protein_coding		Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.	L-fucokinase/GDP-L-fucose pyrophosphorylase;(source:Araport11)
AT1G01220.4	protein_coding		Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.	L-fucokinase/GDP-L-fucose pyrophosphorylase;(source:Araport11)
AT5G04090.7	protein_coding			histidine-tRNA ligase;(source:Araport11)
AT3G13224.3	protein_coding		Belongs to a member of the RNA-binding glycine-rich (RBG) gene superfamily.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT5G04090.5	protein_coding			histidine-tRNA ligase;(source:Araport11)
AT5G04090.4	protein_coding			histidine-tRNA ligase;(source:Araport11)
AT5G04090.3	protein_coding			histidine-tRNA ligase;(source:Araport11)
AT5G04280.4	protein_coding		Encodes one of the zinc finger-containing glycine-rich RNA-binding proteins involved in cold tolerance: AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b), AT5G04280 (AtRZ-1c).  It also, along with AtRZ-1b, plays important roles in plant development, pre- mRNA splicing, and general gene expression.	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
AT4G05445.1	long_noncoding_rna			None;(source:Araport11)
AT1G80865.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G67488.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G67490;(source:Araport11)
AT2G16380.2	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT3G03865.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G19590;(source:Araport11)
AT1G03210.2	protein_coding			Phenazine biosynthesis PhzC/PhzF protein;(source:Araport11)
AT3G21825.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G15970.2	protein_coding			NUP50 (Nucleoporin 50 kDa) protein;(source:Araport11)
AT5G50400.2	protein_coding			purple acid phosphatase 27;(source:Araport11)
AT2G02060.3	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT2G02060.2	protein_coding			Homeodomain-like superfamily protein;(source:Araport11)
AT1G08587.1	long_noncoding_rna			None;(source:Araport11)
AT1G05293.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G17130;(source:Araport11)
AT5G35067.1	protein_coding			hypothetical protein;(source:Araport11)
AT2G19930.3	protein_coding			RNA-dependent RNA polymerase family protein;(source:Araport11)
AT5G04815.1	long_noncoding_rna			None;(source:Araport11)
AT2G09975.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G47990;(source:Araport11)
AT2G02080.3	protein_coding		C2H2 BIRD transcription factor family.	indeterminate(ID)-domain 4;(source:Araport11)
AT1G09993.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G80890;(source:Araport11)
AT2G02080.5	protein_coding		C2H2 BIRD transcription factor family.	indeterminate(ID)-domain 4;(source:Araport11)
AT1G05047.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G14030;(source:Araport11)
AT5G06885.1	long_noncoding_rna			None;(source:Araport11)
AT2G02080.6	protein_coding		C2H2 BIRD transcription factor family.	indeterminate(ID)-domain 4;(source:Araport11)
AT1G06403.1	long_noncoding_rna			None;(source:Araport11)
AT1G48160.2	protein_coding			signal recognition particle 19 kDa protein, putative / SRP19;(source:Araport11)
AT2G35810.2	protein_coding			ureidoglycolate hydrolase;(source:Araport11)
AT3G09550.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT2G46790.5	protein_coding		Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY.	pseudo-response regulator 9;(source:Araport11)
AT2G46790.4	protein_coding		Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY.	pseudo-response regulator 9;(source:Araport11)
AT5G11620.2	protein_coding			SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-like protein;(source:Araport11)
AT2G46790.3	protein_coding		Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY.	pseudo-response regulator 9;(source:Araport11)
AT2G08435.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G31390;(source:Araport11)
AT4G02995.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT3G08295.1	long_noncoding_rna			None;(source:Araport11)
AT1G49938.2	long_noncoding_rna			hypothetical protein;(source:Araport11)
AT3G23560.2	protein_coding		Member of the multidrug and toxic compound extrusion (MATE) family, protects roots from inhibitory compounds.	MATE efflux family protein;(source:Araport11)
AT4G06245.1	small_nucleolar_rna			None;(source:Araport11)
AT1G09133.1	long_noncoding_rna			None;(source:Araport11)
AT4G11547.1	protein_coding			cysteine/histidine-rich C1 domain protein;(source:Araport11)
AT4G11547.2	protein_coding			cysteine/histidine-rich C1 domain protein;(source:Araport11)
AT5G49150.8	protein_coding		Encodes a transmembrane domain containing protein expressed in sperm cells. Target promoter of the male germline-specific transcription factor DUO1.	gamete expressed 2;(source:Araport11)
AT3G23540.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT4G04565.1	long_noncoding_rna			None;(source:Araport11)
AT4G11500.3	pseudogene			pseudogene of cysteine-rich RLK (RECEPTOR-like protein kinase) 34;(source:Araport11)
AT5G49150.3	protein_coding		Encodes a transmembrane domain containing protein expressed in sperm cells. Target promoter of the male germline-specific transcription factor DUO1.	gamete expressed 2;(source:Araport11)
AT5G49150.2	protein_coding		Encodes a transmembrane domain containing protein expressed in sperm cells. Target promoter of the male germline-specific transcription factor DUO1.	gamete expressed 2;(source:Araport11)
AT5G04085.1	small_nuclear_rna			U4;(source:Araport11)
AT5G49150.4	protein_coding		Encodes a transmembrane domain containing protein expressed in sperm cells. Target promoter of the male germline-specific transcription factor DUO1.	gamete expressed 2;(source:Araport11)
AT5G49150.7	protein_coding		Encodes a transmembrane domain containing protein expressed in sperm cells. Target promoter of the male germline-specific transcription factor DUO1.	gamete expressed 2;(source:Araport11)
AT5G49150.6	protein_coding		Encodes a transmembrane domain containing protein expressed in sperm cells. Target promoter of the male germline-specific transcription factor DUO1.	gamete expressed 2;(source:Araport11)
AT2G40690.2	protein_coding		Encodes a putative dihydroxyacetone phosphate (DHAP) reductase involved  in glycerol-3-phosphate supply within the chloroplast for synthesis of glycerolipids. Mutants have reduced levels of hexadecatrienoic acid, which is rescued by exogenous  glycerol-3-phosphate. This gene appears to be involved in the flux of fatty acids in the prokaryotic glyerolipid biosynthesis pathway.	NAD-dependent glycerol-3-phosphate dehydrogenase family protein;(source:Araport11)
AT2G40690.3	protein_coding		Encodes a putative dihydroxyacetone phosphate (DHAP) reductase involved  in glycerol-3-phosphate supply within the chloroplast for synthesis of glycerolipids. Mutants have reduced levels of hexadecatrienoic acid, which is rescued by exogenous  glycerol-3-phosphate. This gene appears to be involved in the flux of fatty acids in the prokaryotic glyerolipid biosynthesis pathway.	NAD-dependent glycerol-3-phosphate dehydrogenase family protein;(source:Araport11)
AT3G08785.1	antisense_rna			Natural antisense transcript overlaps with AT3G56910;(source:Araport11)
AT1G06057.1	long_noncoding_rna			None;(source:Araport11)
AT4G32040.2	protein_coding		A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis.  KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone.	homeobox protein knotted-1-like 5;(source:Araport11)
AT1G06967.1	long_noncoding_rna			None;(source:Araport11)
AT1G04427.1	long_noncoding_rna			None;(source:Araport11)
AT5G23155.2	other_rna			None;(source:Araport11)
AT5G64400.3	protein_coding			CHCH domain protein;(source:Araport11)
AT3G02370.3	protein_coding			tRNA-splicing endonuclease subunit;(source:Araport11)
AT1G07523.1	long_noncoding_rna			None;(source:Araport11)
AT3G04825.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G24860;(source:Araport11)
AT3G01450.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT5G48150.3	protein_coding		Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.	GRAS family transcription factor;(source:Araport11)
AT5G48150.4	protein_coding		Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.	GRAS family transcription factor;(source:Araport11)
AT1G48175.5	protein_coding			Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT3G30460.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G07415.1	small_nuclear_rna			U1;(source:Araport11)
AT1G08253.1	other_rna			None;(source:Araport11)
AT4G31480.5	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT4G31480.4	protein_coding			Coatomer, beta subunit;(source:Araport11)
AT1G48175.3	protein_coding			Cytidine/deoxycytidylate deaminase family protein;(source:Araport11)
AT3G18880.2	protein_coding			Nucleic acid-binding, OB-fold-like protein;(source:Araport11)
AT1G06047.1	long_noncoding_rna			None;(source:Araport11)
AT3G02370.4	protein_coding			tRNA-splicing endonuclease subunit;(source:Araport11)
AT2G34350.2	protein_coding			Nodulin-like / Major Facilitator Superfamily protein;(source:Araport11)
AT3G02325.1	long_noncoding_rna			None;(source:Araport11)
AT1G74390.4	protein_coding			Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT1G74390.3	protein_coding			Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
AT2G07235.1	long_noncoding_rna			None;(source:Araport11)
AT5G27640.3	protein_coding		encodes a member of eukaryotic translation initiation factor 3B family.	translation initiation factor 3B1;(source:Araport11)
AT2G09190.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G40765;(source:Araport11)
AT2G00870.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00870.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G09190.1	long_noncoding_rna			None;(source:Araport11)
AT3G33528.5	protein_coding			hypothetical protein;(source:Araport11)
AT2G03810.5	protein_coding			18S pre-ribosomal assembly protein gar2-like protein;(source:Araport11)
AT3G33528.2	protein_coding			hypothetical protein;(source:Araport11)
AT2G03810.7	protein_coding			18S pre-ribosomal assembly protein gar2-like protein;(source:Araport11)
AT2G03810.6	protein_coding			18S pre-ribosomal assembly protein gar2-like protein;(source:Araport11)
AT1G32630.2	protein_coding			FAM50A-like protein;(source:Araport11)
AT5G05375.1	small_nucleolar_rna			None;(source:Araport11)
AT4G08235.1	small_nucleolar_rna			None;(source:Araport11)
AT2G00850.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G15780.3	protein_coding			mediator of RNA polymerase II transcription subunit 15a-like protein;(source:Araport11)
AT1G15780.2	protein_coding			mediator of RNA polymerase II transcription subunit 15a-like protein;(source:Araport11)
AT1G05230.12	protein_coding		Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes.  The mutations do not affect trichome growth or branch number.	homeodomain GLABROUS 2;(source:Araport11)
AT2G40935.8	protein_coding			PLAC8 family protein;(source:Araport11)
AT2G40935.9	protein_coding			PLAC8 family protein;(source:Araport11)
AT2G40935.6	protein_coding			PLAC8 family protein;(source:Araport11)
AT2G40935.7	protein_coding			PLAC8 family protein;(source:Araport11)
AT2G40935.4	protein_coding			PLAC8 family protein;(source:Araport11)
AT2G40935.5	protein_coding			PLAC8 family protein;(source:Araport11)
AT5G06155.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G41320;(source:Araport11)
AT3G09080.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G06155.2	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G41320;(source:Araport11)
AT2G00460.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G50910.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G13200.2	protein_coding		Encodes a protein with unknown function that is involved in hormone mediated regulation of seed germination/dormancy.	GRAM domain family protein;(source:Araport11)
AT5G01615.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G09230;(source:Araport11)
AT3G08945.1	small_nuclear_rna			U2;(source:Araport11)
AT1G10630.2	protein_coding		A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	ADP-ribosylation factor A1F;(source:Araport11)
AT4G26510.4	protein_coding		One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.	uridine kinase-like 4;(source:Araport11)
AT4G00850.2	protein_coding		Arabidopsis thaliana GRF1-interacting factor 3 (GIF3) mRNA	GRF1-interacting factor 3;(source:Araport11)
AT2G26200.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT3G03565.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, receptacle, light-grown seedling, aerial;(source:Araport11)
AT5G07965.1	miRNA_primary_transcript			microRNA ath-MIR8181 precursor;(source:Araport11)
AT5G02140.2	protein_coding			Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT5G62573.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G09295.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G59950;(source:Araport11)
AT3G61270.2	protein_coding			O-glucosyltransferase rumi-like protein (DUF821);(source:Araport11)
AT1G05035.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G06820.3	protein_coding		Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.	carotenoid isomerase;(source:Araport11)
AT1G06820.4	protein_coding		Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.	carotenoid isomerase;(source:Araport11)
AT3G03375.1	long_noncoding_rna			None;(source:Araport11)
AT5G47380.3	protein_coding			electron transporter, putative (Protein of unknown function, DUF547);(source:Araport11)
AT1G02520.3	protein_coding		Encodes an ATP-binding cassette (ABC) transporter.  Expressed in the vascular tissue of primary stem.The mRNA is cell-to-cell mobile.	P-glycoprotein 11;(source:Araport11)
AT1G02520.2	protein_coding		Encodes an ATP-binding cassette (ABC) transporter.  Expressed in the vascular tissue of primary stem.The mRNA is cell-to-cell mobile.	P-glycoprotein 11;(source:Araport11)
AT1G07570.5	protein_coding		Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues	Protein kinase superfamily protein;(source:Araport11)
AT1G07570.4	protein_coding		Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues	Protein kinase superfamily protein;(source:Araport11)
AT5G05560.2	protein_coding		Encodes a subunit of the Arabidopsis thaliana E3 ubiquitin ligase complex that plays a synergistic role with APC4 both in female gametogenesis and in embryogenesis.	E3 ubiquitin ligase;(source:Araport11)
AT5G05560.3	protein_coding		Encodes a subunit of the Arabidopsis thaliana E3 ubiquitin ligase complex that plays a synergistic role with APC4 both in female gametogenesis and in embryogenesis.	E3 ubiquitin ligase;(source:Araport11)
AT3G13120.3	protein_coding			Ribosomal protein S10p/S20e family protein;(source:Araport11)
AT5G61310.5	protein_coding			Cytochrome c oxidase subunit Vc family protein;(source:Araport11)
AT3G07475.1	long_noncoding_rna			None;(source:Araport11)
AT5G61310.6	protein_coding			Cytochrome c oxidase subunit Vc family protein;(source:Araport11)
AT3G13100.2	protein_coding		member of MRP subfamily	multidrug resistance-associated protein 7;(source:Araport11)
AT5G41740.3	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT5G03525.1	long_noncoding_rna			None;(source:Araport11)
AT2G30480.5	protein_coding			hypothetical protein;(source:Araport11)
AT2G30480.6	protein_coding			hypothetical protein;(source:Araport11)
AT2G30480.7	protein_coding			hypothetical protein;(source:Araport11)
AT4G25240.2	protein_coding		Encodes GPI-anchored SKU5-like protein. Acts redundantly with SKU5 and SKS1 in roots.	SKU5 similar 1;(source:Araport11)
AT4G02875.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT4G38550.4	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT5G01865.1	long_noncoding_rna			None;(source:Araport11)
AT5G12290.4	protein_coding		Encodes a mitochondrial outer membrane protein, involved in galactoglycerolipid biosynthesis. The dgd1 mutant phenotype is suppressed in the dgs1 mutant background.	dgd1 suppressor 1;(source:Araport11)
AT2G30480.8	protein_coding			hypothetical protein;(source:Araport11)
AT2G30480.9	protein_coding			hypothetical protein;(source:Araport11)
AT4G38550.2	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT4G38550.3	protein_coding			phospholipase-like protein (PEARLI 4) family protein;(source:Araport11)
AT1G14580.4	protein_coding			C2H2-like zinc finger protein;(source:Araport11)
AT5G51290.2	protein_coding		Encodes a ceramide kinase that plays a role in modulating cell death.	Diacylglycerol kinase family protein;(source:Araport11)
AT1G14580.3	protein_coding			C2H2-like zinc finger protein;(source:Araport11)
AT5G20165.4	protein_coding			kish-A-like protein;(source:Araport11)
AT3G52250.2	protein_coding		PWR Encodes a SANT domain containing protein. It promotes expression of  CRC, and MIR172a, b, and d to promote floral meristem determinacy.It interacts with HDA9 and has similar effects on H3K9 and H3K14methylation The mRNA is cell-to-cell mobile. Involved in controlling seeds germination under HT through histone acetylation modification and H2A.Z deposition.	Duplicated homeodomain-like superfamily protein;(source:Araport11)
AT2G46570.2	protein_coding		putative laccase,  a member of laccase family of genes (with 17 members in Arabidopsis).	laccase 6;(source:Araport11)
AT1G80270.5	protein_coding			PENTATRICOPEPTIDE REPEAT 596;(source:Araport11)
AT1G80270.4	protein_coding			PENTATRICOPEPTIDE REPEAT 596;(source:Araport11)
AT1G28570.3	protein_coding			SGNH hydrolase-type esterase superfamily protein;(source:Araport11)
AT4G16730.2	protein_coding		In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides  downstream of the start codon leading to a  frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.	terpene synthase 02;(source:Araport11)
AT1G18180.2	protein_coding			3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295);(source:Araport11)
AT2G14765.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G24310.4	protein_coding		One of four ABI-like proteins. Involved in trichome morphogenesis, root elongation. Associates with microtubules.	ABL interactor-like protein 3;(source:Araport11)
AT5G24310.3	protein_coding		One of four ABI-like proteins. Involved in trichome morphogenesis, root elongation. Associates with microtubules.	ABL interactor-like protein 3;(source:Araport11)
AT5G49540.2	protein_coding			Rab5-interacting family protein;(source:Araport11)
AT1G15125.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11)
AT2G46550.3	protein_coding			transmembrane protein;(source:Araport11)
AT5G36740.4	protein_coding			Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT5G36740.5	protein_coding			Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein;(source:Araport11)
AT4G10120.3	protein_coding		Encodes a protein with putative sucrose-phosphate synthase activity.	Sucrose-phosphate synthase family protein;(source:Araport11)
AT4G10120.5	protein_coding		Encodes a protein with putative sucrose-phosphate synthase activity.	Sucrose-phosphate synthase family protein;(source:Araport11)
AT4G10120.4	protein_coding		Encodes a protein with putative sucrose-phosphate synthase activity.	Sucrose-phosphate synthase family protein;(source:Araport11)
AT4G13345.7	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT4G13345.6	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT4G13345.5	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT4G13345.4	protein_coding			Serinc-domain containing serine and sphingolipid biosynthesis protein;(source:Araport11)
AT3G47290.2	protein_coding			phosphatidylinositol-speciwc phospholipase C8;(source:Araport11)
AT5G09025.1	long_noncoding_rna			None;(source:Araport11)
AT5G38391.1	protein_coding			F-box/RNI superfamily protein;(source:Araport11)
AT5G60840.2	protein_coding			hypothetical protein;(source:Araport11)
AT1G06265.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G06260;(source:Araport11)
AT5G46395.1	protein_coding			transmembrane protein;(source:Araport11)
AT1G75785.1	protein_coding			protein TUB21;(source:Araport11)
AT1G52030.3	protein_coding		Similar to  myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.	myrosinase-binding protein 2;(source:Araport11)
AT1G21560.6	protein_coding			hypothetical protein;(source:Araport11)
AT1G21560.4	protein_coding			hypothetical protein;(source:Araport11)
AT1G21560.5	protein_coding			hypothetical protein;(source:Araport11)
AT1G24040.3	protein_coding			Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT5G20450.5	protein_coding			myosin;(source:Araport11)
AT5G20450.4	protein_coding			myosin;(source:Araport11)
AT5G20450.7	protein_coding			myosin;(source:Araport11)
AT5G20450.6	protein_coding			myosin;(source:Araport11)
AT4G04190.3	protein_coding			transmembrane protein;(source:Araport11)
AT4G28020.4	protein_coding			tRNA-thr(GGU) m(6)t(6)A37 methyltransferase;(source:Araport11)
AT3G28550.2	protein_coding			Proline-rich extensin-like family protein;(source:Araport11)
AT5G20450.9	protein_coding			myosin;(source:Araport11)
AT5G20450.8	protein_coding			myosin;(source:Araport11)
AT5G01730.5	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein 4;(source:Araport11)
AT4G09415.1	long_noncoding_rna			None;(source:Araport11)
AT5G01730.7	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein 4;(source:Araport11)
AT5G01730.6	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein 4;(source:Araport11)
AT3G09885.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, dark-grown seedling, light-grown seedling;(source:Araport11)
AT5G01730.2	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein 4;(source:Araport11)
AT5G01730.9	protein_coding		Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.	SCAR family protein 4;(source:Araport11)
AT4G04180.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT5G27360.4	protein_coding		Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence.	Major facilitator superfamily protein;(source:Araport11)
AT5G27360.2	protein_coding		Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence.	Major facilitator superfamily protein;(source:Araport11)
AT5G27360.3	protein_coding		Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence.	Major facilitator superfamily protein;(source:Araport11)
AT5G46910.2	protein_coding		H3K27me3 demethylase involved in temperature and photoperiod dependent repressing of flowering.	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein;(source:Araport11)
AT1G08163.1	miRNA_primary_transcript			microRNA ath-MIR5649b precursor;(source:Araport11)
AT1G78540.3	protein_coding		Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.	SH2 domain protein B;(source:Araport11)
AT5G08795.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, aerial;(source:Araport11)
AT5G06825.1	small_nucleolar_rna			None;(source:Araport11)
AT5G64980.2	protein_coding			transcription factor;(source:Araport11)
AT3G29637.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G29637.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G19410.2	protein_coding			ABC-2 type transporter family protein;(source:Araport11)
AT5G00580.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G00580.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G35170.3	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT1G35170.4	protein_coding			TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein;(source:Araport11)
AT5G00580.4	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09033.1	long_noncoding_rna			None;(source:Araport11)
AT4G09300.4	protein_coding			LisH and RanBPM domains containing protein;(source:Araport11)
AT2G08935.1	long_noncoding_rna			None;(source:Araport11)
AT4G09300.3	protein_coding			LisH and RanBPM domains containing protein;(source:Araport11)
AT4G09300.2	protein_coding			LisH and RanBPM domains containing protein;(source:Araport11)
AT5G50160.2	protein_coding		Encodes a ferric chelate reductase that is expressed in shoots and flowers.	ferric reduction oxidase 8;(source:Araport11)
AT5G00325.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09953.1	long_noncoding_rna			None;(source:Araport11)
AT4G00953.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G23365.1	protein_coding			carboxyl-terminal peptidase;(source:Araport11)
AT4G19006.2	protein_coding			Proteasome component (PCI) domain protein;(source:Araport11)
AT1G69295.2	protein_coding		Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.	plasmodesmata callose-binding protein 4;(source:Araport11)
AT2G05785.1	long_noncoding_rna			None;(source:Araport11)
AT3G51960.3	protein_coding		bZIP transcription  factor induced by salt stress and promoted salt tolerance. Localized to the cytoplasm and nucleus under control conditions and targeted preferentially to the nucleus under salt stress	basic leucine zipper 24;(source:Araport11)
AT5G40340.2	protein_coding		PWWP domain protein involved in regulation of FLC and flowering time.	Tudor/PWWP/MBT superfamily protein;(source:Araport11)
AT2G00740.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G09943.1	novel_transcribed_region			novel transcribed region; detected in receptacle, dark-grown seedling, light-grown seedling, pollen;(source:Araport11)
AT4G16535.1	protein_coding			leukocyte receptor cluster-like protein;(source:Araport11)
AT1G08903.1	long_noncoding_rna			None;(source:Araport11)
AT3G06975.1	long_noncoding_rna			None;(source:Araport11)
AT5G13320.3	protein_coding		Encodes an enzyme capable of conjugating amino acids to 4-substituted benzoates. 4-HBA (4-hydroxybenzoic acid) and pABA (4-aminobenzoate) may be targets of the enzyme in Arabidopsis, leading to the production of pABA-Glu, 4HBA-Glu, or other related compounds. This enzyme is involved in disease-resistance signaling. It is required for the accumulation of salicylic acid, activation of defense responses, and resistance to Pseudomonas syringae. Salicylic acid can decrease this enzyme Primes activity in vitro and may act as a competitive inhibitor. Expression of PBS3/GH3.12 can be detected in cotyledons, true leaves, hypocotyls, and occasionally in some parts of roots from 10-day-old seedlings.  No expression has been detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.	Auxin-responsive GH3 family protein;(source:Araport11)
AT5G40350.2	protein_coding		Myb24 transcription factor. Member of the R2R3 factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development. MYB24 interacts with JAZ proteins, and functions redundantly with MYB21 and MYB57 to regulate stamen development.	myb domain protein 24;(source:Araport11)
AT2G42300.5	protein_coding			basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT5G45050.4	protein_coding		Encodes a member of the WRKY Transcription Factor (Group II-e) family.	Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT4G04485.1	small_nucleolar_rna			None;(source:Araport11)
AT5G45050.3	protein_coding		Encodes a member of the WRKY Transcription Factor (Group II-e) family.	Disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G14190.2	protein_coding			Glucose-methanol-choline (GMC) oxidoreductase family protein;(source:Araport11)
AT2G25730.3	protein_coding			zinc finger FYVE domain protein;(source:Araport11)
AT2G25730.4	protein_coding			zinc finger FYVE domain protein;(source:Araport11)
AT3G09930.2	protein_coding		GDSL-motif  esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates.	GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11)
AT1G07183.1	long_noncoding_rna			None;(source:Araport11)
AT4G16566.2	protein_coding		Encodes a protein that has an unexpected bifunctional capability in vitro. The purified enzyme has  adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) and ADP-sulfurylase activity (E.C. 2.7.7.5). The latter is activated at low pH. The enzyme can exert it phosphorylase activity on a range of related substrates in vitro, but it acts best with APS (adenosine 5 Prime-phsophosulfate). This protein appears to function as a homodimer.	histidine triad nucleotide-binding 4;(source:Araport11)
AT3G01335.1	novel_transcribed_region			novel transcribed region; detected in receptacle, light-grown seedling;(source:Araport11)
AT5G50010.uORF2-1	uORF			Derives_from AT5G50010;(source:Araport11)
AT5G01375.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G07240;(source:Araport11)
AT5G50010.uORF2-2	uORF			Derives_from AT5G50010;(source:Araport11)
AT1G09893.1	small_nuclear_rna			U5;(source:Araport11)
AT2G08540.1	long_noncoding_rna			None;(source:Araport11)
AT3G22125.4	protein_coding			transmembrane protein;(source:Araport11)
AT3G22125.5	protein_coding			transmembrane protein;(source:Araport11)
AT1G04837.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G11090;(source:Araport11)
AT1G07270.2	protein_coding			Cell division control, Cdc6;(source:Araport11)
AT5G58700.3	protein_coding			phosphatidylinositol-speciwc phospholipase C4;(source:Araport11)
AT1G60560.3	protein_coding			SWIM zinc finger family protein;(source:Araport11)
AT4G24660.2	protein_coding			homeobox protein 22;(source:Araport11)
AT3G06045.1	long_noncoding_rna			None;(source:Araport11)
AT3G02045.1	small_nucleolar_rna			None;(source:Araport11)
AT5G05475.1	long_noncoding_rna			None;(source:Araport11)
AT3G26370.2	protein_coding			O-fucosyltransferase family protein;(source:Araport11)
AT1G69310.4	protein_coding		Encodes WRKY57, a member of the WRKY Transcription Factor. Activation of WRKY57 confers drought tolerance.	WRKY DNA-binding protein 57;(source:Araport11)
AT4G05205.1	long_noncoding_rna			None;(source:Araport11)
AT2G35555.1	protein_coding			serpin;(source:Araport11)
AT1G69310.3	protein_coding		Encodes WRKY57, a member of the WRKY Transcription Factor. Activation of WRKY57 confers drought tolerance.	WRKY DNA-binding protein 57;(source:Araport11)
AT5G22620.4	protein_coding		encodes a putative 2-carboxy-D-arabinitol 1-phosphate phosphatase	phosphoglycerate/bisphosphoglycerate mutase family protein;(source:Araport11)
AT5G22620.5	protein_coding		encodes a putative 2-carboxy-D-arabinitol 1-phosphate phosphatase	phosphoglycerate/bisphosphoglycerate mutase family protein;(source:Araport11)
AT5G22620.6	protein_coding		encodes a putative 2-carboxy-D-arabinitol 1-phosphate phosphatase	phosphoglycerate/bisphosphoglycerate mutase family protein;(source:Araport11)
AT2G45190.2	protein_coding		Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).	Plant-specific transcription factor YABBY family protein;(source:Araport11)
AT1G08293.1	long_noncoding_rna			None;(source:Araport11)
AT4G06430.2	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT1G06630.8	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT4G06430.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, pollen, aerial, shoot apical meristem;(source:Araport11)
AT1G59680.2	protein_coding			F-box associated ubiquitination effector family protein;(source:Araport11)
AT2G42810.3	protein_coding		Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. The gene is alternately spliced. This variant is an integral membrane protein localized to the ER and nuclear envelope. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.  It also regulates tetrapyrrole biosynthesis through the accumulation of Mg-ProtoIX and acts as a negative regulator of photosynthesis associated nuclear gene expression during chloroplast biogenesis and development.	protein phosphatase 5.2;(source:Araport11)
AT4G22880.3	protein_coding		encodes leucoanthocyanidin dioxygenase, which is involved in proanthocyanin biosynthesis. Mutant analysis suggests that this gene is also involved in vacuole formation.	leucoanthocyanidin dioxygenase;(source:Araport11)
AT1G04033.1	long_noncoding_rna			None;(source:Araport11)
AT1G06630.5	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G06630.4	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G06630.7	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G06630.6	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G55280.2	protein_coding			Lipase/lipooxygenase, PLAT/LH2 family protein;(source:Araport11)
AT1G62700.2	protein_coding		Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.	NAC (No apical meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT3G17020.2	protein_coding			Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
AT3G59245.1	protein_coding			pirin carboxy-terminal region protein;(source:Araport11)
AT1G08283.1	long_noncoding_rna			None;(source:Araport11)
AT5G49290.2	protein_coding			receptor like protein 56;(source:Araport11)
AT2G05405.1	long_noncoding_rna			None;(source:Araport11)
AT2G27930.4	protein_coding			PLATZ transcription factor family protein;(source:Araport11)
AT4G16900.2	protein_coding			Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11)
AT2G27930.6	protein_coding			PLATZ transcription factor family protein;(source:Araport11)
AT2G28790.2	protein_coding			Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
AT3G57810.4	protein_coding			Cysteine proteinases superfamily protein;(source:Araport11)
AT1G09017.1	long_noncoding_rna			None;(source:Araport11)
AT2G27930.3	protein_coding			PLATZ transcription factor family protein;(source:Araport11)
AT4G03450.2	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT1G05810.2	protein_coding			Rab GTPase-like A5A protein;(source:Araport11)
AT3G06415.1	long_noncoding_rna			None;(source:Araport11)
AT2G09540.1	long_noncoding_rna			None;(source:Araport11)
AT4G00700.2	protein_coding			C2 calcium/lipid-binding plant phosphoribosyltransferase family protein;(source:Araport11)
AT1G08967.1	long_noncoding_rna			None;(source:Araport11)
AT2G45480.2	protein_coding		Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development.	growth-regulating factor 9;(source:Araport11)
AT4G03545.1	long_noncoding_rna			None;(source:Araport11)
AT4G25700.3	protein_coding		Converts beta-carotene to zeaxanthin via cryptoxanthin.	beta-hydroxylase 1;(source:Araport11)
AT1G08730.2	protein_coding		Encodes a class XI myosin that is involved in organelle motility, actin organization, and optimal growth of pollen tubes.	Myosin family protein with Dil domain-containing protein;(source:Araport11)
AT3G26140.2	protein_coding			Cellulase (glycosyl hydrolase family 5) protein;(source:Araport11)
AT5G06770.4	protein_coding		KHZ2  is a CCCH zinc-finger and KH domain protein belonging to the VII subfamily. It is expressed throughout the plant. Highly similar to KHZ1.Double mutants with khz1 are  late flowering. Overexpression leads to increased rates of leaf senescence.	KH domain-containing protein / zinc finger (CCCH type) family protein;(source:Araport11)
AT2G09600.1	novel_transcribed_region			novel transcribed region; detected in carpel, receptacle, leaf, dark-grown seedling, light-grown seedling, aerial, shoot apical meristem;(source:Araport11)
AT1G11170.8	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT1G11170.9	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT1G11170.7	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT4G31610.2	protein_coding		Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins	Transcriptional factor B3 family protein;(source:Araport11)
AT1G11170.5	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT3G07895.1	long_noncoding_rna			None;(source:Araport11)
AT1G11170.3	protein_coding			lysine ketoglutarate reductase trans-splicing-like protein (DUF707);(source:Araport11)
AT1G07745.5	protein_coding		Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.	DNA repair RAD51-like protein;(source:Araport11)
AT3G05825.1	long_noncoding_rna			None;(source:Araport11)
AT3G04195.1	antisense_rna			Natural antisense transcript overlaps with AT3G21820;(source:Araport11)
AT1G49160.3	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its	Protein kinase superfamily protein;(source:Araport11)
AT1G49160.4	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its	Protein kinase superfamily protein;(source:Araport11)
AT1G49160.5	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its	Protein kinase superfamily protein;(source:Araport11)
AT1G49160.6	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its	Protein kinase superfamily protein;(source:Araport11)
AT1G49160.7	protein_coding		Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its	Protein kinase superfamily protein;(source:Araport11)
AT2G15530.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G15530.7	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT2G15530.6	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G05800.3	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT3G01425.1	long_noncoding_rna			None;(source:Araport11)
AT1G61420.5	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G63420.2	protein_coding			O-glucosyltransferase-like protein (DUF821);(source:Araport11)
AT5G56650.2	protein_coding		encodes a protein similar to IAA conjugate hydrolases. Enzyme assays with purified GST-tagged protein shows some activity in vitro but too low to be physiologically significant.	IAA-leucine resistant (ILR)-like 1;(source:Araport11)
AT1G61420.2	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G05687.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G21880;(source:Araport11)
AT3G44700.2	protein_coding			transmembrane protein;(source:Araport11)
AT1G15250.2	protein_coding			Zinc-binding ribosomal protein family protein;(source:Araport11)
AT4G07325.1	protein_coding			replication-like protein;(source:Araport11)
AT3G30305.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G56190.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G56190.5	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT1G10715.1	protein_coding			EMBRYO SURROUNDING FACTOR-like protein;(source:Araport11)
AT5G56190.7	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT4G22285.2	protein_coding			Ubiquitin C-terminal hydrolases superfamily protein;(source:Araport11)
AT1G61430.5	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT1G61430.6	protein_coding			S-locus lectin protein kinase family protein;(source:Araport11)
AT4G09235.1	long_noncoding_rna			None;(source:Araport11)
AT3G02400.2	protein_coding		Contains a single exon and encodes a ~66-kD protein with a Forkhead- Associated domain. Binds the promoter of PEX11b and expression is correlated with negative regulation of PEX11b.	SMAD/FHA domain-containing protein;(source:Araport11)
AT3G00985.1	small_nucleolar_rna			None;(source:Araport11)
AT1G61890.2	protein_coding			MATE efflux family protein;(source:Araport11)
AT1G61890.3	protein_coding			MATE efflux family protein;(source:Araport11)
AT1G23720.4	protein_coding			Proline-rich extensin-like family protein;(source:Araport11)
AT3G11290.2	protein_coding			Myb/SANT-like DNA-binding domain protein;(source:Araport11)
AT1G23720.2	protein_coding			Proline-rich extensin-like family protein;(source:Araport11)
AT5G08840.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G58570;(source:Araport11)
AT1G09547.1	long_noncoding_rna			None;(source:Araport11)
AT1G04313.1	long_noncoding_rna			None;(source:Araport11)
AT2G03985.1	long_noncoding_rna			None;(source:Araport11)
AT3G10455.1	protein_coding			plant self-incompatibility protein S1 family protein;(source:Araport11)
AT2G23780.3	protein_coding		Leucine rich extensin protein involved in cell wall biogenesis and organization. Interacts with several members of the RALF family of ligand peptides.	RING/U-box superfamily protein;(source:Araport11)
AT4G06950.1	long_noncoding_rna			None;(source:Araport11)
AT5G08820.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G58130;(source:Araport11)
AT5G00535.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00530.3	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G00530.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G44798.7	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44800;(source:Araport11)
AT2G44798.6	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44800;(source:Araport11)
AT2G44798.5	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44800;(source:Araport11)
AT2G44798.4	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44800;(source:Araport11)
AT2G44798.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G44800;(source:Araport11)
AT3G18145.2	pseudogene			pseudogene of carbamoyl phosphate synthetase A;(source:Araport11)
AT2G37340.6	protein_coding		encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	arginine/serine-rich zinc knuckle-containing protein 33;(source:Araport11)
AT2G37340.4	protein_coding		encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	arginine/serine-rich zinc knuckle-containing protein 33;(source:Araport11)
AT2G37340.5	protein_coding		encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.	arginine/serine-rich zinc knuckle-containing protein 33;(source:Araport11)
AT2G00520.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G62620.2	protein_coding			Flavin-binding monooxygenase family protein;(source:Araport11)
AT3G15352.2	protein_coding		Encodes protein similar to yeast COX17, a copper-binding protein that mediates the delivery of Cu to the mitochondria for the assembly of a functional cytochrome oxidase complex.	cytochrome c oxidase 17;(source:Araport11)
AT3G15352.3	protein_coding		Encodes protein similar to yeast COX17, a copper-binding protein that mediates the delivery of Cu to the mitochondria for the assembly of a functional cytochrome oxidase complex.	cytochrome c oxidase 17;(source:Araport11)
AT3G04380.3	protein_coding		Encodes SUVR4, a nucleolar histone methyltransferase with preference for monomethylated H3K9.  One of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT3G04380.5	protein_coding		Encodes SUVR4, a nucleolar histone methyltransferase with preference for monomethylated H3K9.  One of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT3G04380.4	protein_coding		Encodes SUVR4, a nucleolar histone methyltransferase with preference for monomethylated H3K9.  One of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT3G15352.4	protein_coding		Encodes protein similar to yeast COX17, a copper-binding protein that mediates the delivery of Cu to the mitochondria for the assembly of a functional cytochrome oxidase complex.	cytochrome c oxidase 17;(source:Araport11)
AT3G04380.6	protein_coding		Encodes SUVR4, a nucleolar histone methyltransferase with preference for monomethylated H3K9.  One of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins.  Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity.  SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.	SET-domain containing protein lysine methyltransferase family protein;(source:Araport11)
AT2G08660.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G34390;(source:Araport11)
AT5G42280.2	protein_coding			Cysteine/Histidine-rich C1 domain family protein;(source:Araport11)
AT5G09085.1	long_noncoding_rna			None;(source:Araport11)
AT5G04975.1	miRNA_primary_transcript			microRNA ath-MIR5643b precursor;(source:Araport11)
AT5G04560.3	protein_coding		Encodes a DNA glycosylase DEMETER (DME).  Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene.  DME can excise 5-methylcytosine in vitro and when expressed in E. coli.  DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele.	HhH-GPD base excision DNA repair family protein;(source:Araport11)
AT1G04990.6	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G04990.4	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT1G04990.5	protein_coding			Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
AT5G08750.4	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G08750.5	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G08750.6	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT4G30120.2	protein_coding		encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc	heavy metal atpase 3;(source:Araport11)
AT1G11110.2	protein_coding			LisH and RanBPM domains containing protein;(source:Araport11)
AT1G11110.3	protein_coding			LisH and RanBPM domains containing protein;(source:Araport11)
AT5G08750.8	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT5G08750.9	protein_coding			RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
AT2G45580.3	protein_coding			cytochrome P450, family 76, subfamily C, polypeptide 3;(source:Araport11)
AT2G45580.2	protein_coding			cytochrome P450, family 76, subfamily C, polypeptide 3;(source:Araport11)
AT4G07985.1	long_noncoding_rna			None;(source:Araport11)
AT5G57320.2	protein_coding			actin filament bundling protein P-115-ABP protein;(source:Araport11)
AT5G03335.1	long_noncoding_rna			None;(source:Araport11)
AT4G30100.2	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT1G05747.1	long_noncoding_rna			None;(source:Araport11)
AT1G75980.2	protein_coding			Single hybrid motif superfamily protein;(source:Araport11)
AT1G09785.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT1G35513.3	pseudogene		pseudogene of isochorismate synthase-related / isochorismate mutase-related	pseudogene of ADC synthase superfamily protein;(source:Araport11)
AT1G08607.1	long_noncoding_rna			None;(source:Araport11)
AT5G02710.2	protein_coding			zinc/iron-chelating domain protein;(source:Araport11)
AT5G39785.4	protein_coding			hypothetical protein (DUF1666);(source:Araport11)
AT5G39785.5	protein_coding			hypothetical protein (DUF1666);(source:Araport11)
AT5G39785.3	protein_coding			hypothetical protein (DUF1666);(source:Araport11)
AT1G80790.3	protein_coding		Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).The mRNA is cell-to-cell mobile.	XH/XS domain-containing protein;(source:Araport11)
AT1G64690.3	protein_coding		Encodes BRANCHLESS TRICHOME (BLT) involved in trichome development.  A large portion of the internal amino acid sequence of BLT is predicted to form a coiled-coil domain.  BLT mutants form branchless trichomes with blunt tips.	branchless trichome;(source:Araport11)
AT1G59940.2	protein_coding		Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.	response regulator 3;(source:Araport11)
AT1G55917.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G64690.4	protein_coding		Encodes BRANCHLESS TRICHOME (BLT) involved in trichome development.  A large portion of the internal amino acid sequence of BLT is predicted to form a coiled-coil domain.  BLT mutants form branchless trichomes with blunt tips.	branchless trichome;(source:Araport11)
AT1G73280.4	protein_coding			serine carboxypeptidase-like 3;(source:Araport11)
AT4G04625.1	long_noncoding_rna			None;(source:Araport11)
AT1G34044.3	pseudogene			pseudogene of 50S ribosomal protein L34;(source:Araport11)
AT1G30545.2	protein_coding			S-adenosyl-L-methionine-dependent methyltransferase superfamily protein;(source:Araport11)
AT1G30545.1	protein_coding			S-adenosyl-L-methionine-dependent methyltransferase superfamily protein;(source:Araport11)
AT1G73280.3	protein_coding			serine carboxypeptidase-like 3;(source:Araport11)
AT3G50380.4	protein_coding			vacuolar protein sorting-associated protein, putative (DUF1162);(source:Araport11)
AT1G68930.2	protein_coding			pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
AT3G28080.5	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT3G50380.2	protein_coding			vacuolar protein sorting-associated protein, putative (DUF1162);(source:Araport11)
AT1G06097.1	long_noncoding_rna			None;(source:Araport11)
AT4G27852.3	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G27850 and AT4G27860;(source:Araport11)
AT3G28080.9	protein_coding		nodulin MtN21-like transporter family protein	nodulin MtN21 /EamA-like transporter family protein;(source:Araport11)
AT2G23000.2	protein_coding			serine carboxypeptidase-like 10;(source:Araport11)
AT3G28635.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G61370.3	protein_coding			pre-mRNA-splicing factor CWC22-like protein (DUF3245);(source:Araport11)
AT4G21063.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G05005.1	miRNA_primary_transcript			microRNA ath-MIR854e precursor;(source:Araport11)
AT2G04800.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G08673.1	long_noncoding_rna			None;(source:Araport11)
AT1G06710.13	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT3G22690.3	protein_coding		YS1 is a PPR protein involved in RNA editing of plastid encoded genes. Natural variation in this locus is associated with increased photosynthetic acclimation.	LOW protein: PPR containing-like protein;(source:Araport11)
AT1G06877.1	small_nuclear_rna			U4;(source:Araport11)
AT1G21760.2	protein_coding		This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures.The mRNA is cell-to-cell mobile.	F-box protein 7;(source:Araport11)
AT2G04800.4	protein_coding			hypothetical protein;(source:Araport11)
AT3G00200.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G53150.3	protein_coding			DnaJ heat shock amino-terminal domain protein;(source:Araport11)
AT5G04415.1	miRNA_primary_transcript			microRNA ath-MIR5657 precursor;(source:Araport11)
AT5G08590.2	protein_coding		Encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily.	SNF1-related protein kinase 2.1;(source:Araport11)
AT2G06395.1	long_noncoding_rna			None;(source:Araport11)
AT3G26480.2	protein_coding			Transducin family protein / WD-40 repeat family protein;(source:Araport11)
AT5G53150.6	protein_coding			DnaJ heat shock amino-terminal domain protein;(source:Araport11)
AT3G03955.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G20210;(source:Araport11)
AT1G17040.3	protein_coding		Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.	SH2 domain protein A;(source:Araport11)
AT3G45750.4	protein_coding			Nucleotidyltransferase family protein;(source:Araport11)
AT4G13520.2	protein_coding		Encodes a small acid protein (SMAP1) that mediates responses Arabidopsis root to the synthetic auxin 2,4-Dichlorophenoxyacetic acid.The mRNA is cell-to-cell mobile.	small acidic protein 1;(source:Araport11)
AT1G04893.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G11820;(source:Araport11)
AT3G07980.2	protein_coding		MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required  for pollen development but not essential.	mitogen-activated protein kinase kinase kinase 6;(source:Araport11)
AT4G24680.4	protein_coding		Encodes MOS1 (MODIFIER OF snc1).  MOS1 contains a BAT2 domain that is conserved in plants and animals. MOS1 associates with the promoter of SNC1 and regulates its expression.	modifier of snc1;(source:Araport11)
AT4G31070.2	protein_coding			PPR superfamily protein;(source:Araport11)
AT4G24680.2	protein_coding		Encodes MOS1 (MODIFIER OF snc1).  MOS1 contains a BAT2 domain that is conserved in plants and animals. MOS1 associates with the promoter of SNC1 and regulates its expression.	modifier of snc1;(source:Araport11)
AT3G08575.1	small_nuclear_rna			U5;(source:Araport11)
AT4G05915.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G11670;(source:Araport11)
AT5G05895.1	long_noncoding_rna			None;(source:Araport11)
AT5G07825.1	long_noncoding_rna			None;(source:Araport11)
AT5G06195.1	novel_transcribed_region			novel transcribed region; detected in root, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling;(source:Araport11)
AT4G04425.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT4G03080;(source:Araport11)
AT1G48970.2	protein_coding			NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
AT5G03425.1	miRNA_primary_transcript			microRNA ath-MIR8173 precursor;(source:Araport11)
AT2G37080.3	protein_coding		Encodes RIP2 (ROP interactive partner 2), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants).	ROP interactive partner 3;(source:Araport11)
AT2G37080.2	protein_coding		Encodes RIP2 (ROP interactive partner 2), a putative Rho protein effector, interacting specifically with the active form of ROPs (Rho proteins of plants).	ROP interactive partner 3;(source:Araport11)
AT2G08815.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G36650;(source:Araport11)
AT3G08960.3	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT3G08960.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT4G33240.5	protein_coding		Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain.  fab1a/fab1b pollen grains not viable and have defective vacuolar organization. FAB1A and FAB1B complement the enlarged vacuolar phenotype of the fission yeast ste12delta mutant.	1-phosphatidylinositol-3-phosphate 5-kinase FAB1A;(source:Araport11)
AT4G33240.4	protein_coding		Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain.  fab1a/fab1b pollen grains not viable and have defective vacuolar organization. FAB1A and FAB1B complement the enlarged vacuolar phenotype of the fission yeast ste12delta mutant.	1-phosphatidylinositol-3-phosphate 5-kinase FAB1A;(source:Araport11)
AT4G33240.7	protein_coding		Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain.  fab1a/fab1b pollen grains not viable and have defective vacuolar organization. FAB1A and FAB1B complement the enlarged vacuolar phenotype of the fission yeast ste12delta mutant.	1-phosphatidylinositol-3-phosphate 5-kinase FAB1A;(source:Araport11)
AT4G33240.6	protein_coding		Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain.  fab1a/fab1b pollen grains not viable and have defective vacuolar organization. FAB1A and FAB1B complement the enlarged vacuolar phenotype of the fission yeast ste12delta mutant.	1-phosphatidylinositol-3-phosphate 5-kinase FAB1A;(source:Araport11)
AT5G00400.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT5G02985.1	long_noncoding_rna			None;(source:Araport11)
AT4G16162.6	protein_coding			Leucine-rich repeat (LRR) family protein;(source:Araport11)
AT1G73460.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G49530.2	protein_coding		Transcription factor that serves as a molecular link between cold signals and pathogen resistance  responses.  Undergoes proteolytic processing triggered by cold-induced changes in membrane fluidity.It relocates from the plasma membrane to the nucleus in response to ER stress. NAC062 is phosphorylated by SnRK2.8 at Thr-142.	NAC domain containing protein 62;(source:Araport11)
AT4G04325.1	antisense_rna			Natural antisense transcript overlaps with AT4G02880;(source:Araport11)
AT4G29530.2	protein_coding		Encodes a thiamin monophosphate phosphatase. Knockouts show no visible defects either in morphology or thiamin, ThMP and ThDP levels suggesting that Arabidopsis at least one other source of ThMPase activity.	Pyridoxal phosphate phosphatase-related protein;(source:Araport11)
AT1G06163.1	long_noncoding_rna			None;(source:Araport11)
AT5G48720.3	protein_coding		Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray.  Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.	x-ray induced transcript 1;(source:Araport11)
AT4G00420.4	protein_coding			Double-stranded RNA-binding domain (DsRBD)-containing protein;(source:Araport11)
AT5G48720.4	protein_coding		Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray.  Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.	x-ray induced transcript 1;(source:Araport11)
AT2G30630.3	protein_coding			P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
AT2G27507.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G04953.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G12480;(source:Araport11)
AT4G08495.1	long_noncoding_rna			None;(source:Araport11)
AT1G05427.1	small_nucleolar_rna			None;(source:Araport11)
AT3G04755.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G24570;(source:Araport11)
AT3G60330.3	protein_coding			H[+]-ATPase 7;(source:Araport11)
AT3G60330.4	protein_coding			H[+]-ATPase 7;(source:Araport11)
AT1G23935.2	protein_coding			apoptosis inhibitory protein;(source:Araport11)
AT1G23935.3	protein_coding			apoptosis inhibitory protein;(source:Araport11)
AT1G76970.3	protein_coding			Target of Myb protein 1;(source:Araport11)
AT5G04310.3	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT1G76970.5	protein_coding			Target of Myb protein 1;(source:Araport11)
AT1G09313.1	long_noncoding_rna			None;(source:Araport11)
AT1G76970.7	protein_coding			Target of Myb protein 1;(source:Araport11)
AT1G76970.6	protein_coding			Target of Myb protein 1;(source:Araport11)
AT3G20250.3	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts. APUM5 is involved in susceptibility to CMV and is not required for bacterial or fungal pathogen resistance although its expression is induced upon bacterial and fungal infection. It is involved in the osmotic, salt, and drought stress responses.	pumilio 5;(source:Araport11)
AT3G20250.2	protein_coding		Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 Prime UTR of target mRNA transcripts. APUM5 is involved in susceptibility to CMV and is not required for bacterial or fungal pathogen resistance although its expression is induced upon bacterial and fungal infection. It is involved in the osmotic, salt, and drought stress responses.	pumilio 5;(source:Araport11)
AT5G36230.2	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT1G79840.6	protein_coding		Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development.  Directly regulated by WER.	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein;(source:Araport11)
AT3G02745.1	long_noncoding_rna			None;(source:Araport11)
AT4G04385.1	long_noncoding_rna			None;(source:Araport11)
AT2G32950.2	protein_coding		COP1, E3 ligase, represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light.The mRNA is cell-to-cell mobile.	Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G43450.2	protein_coding		encodes a protein whose sequence is similar to ACC oxidase	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT3G24840.6	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G09020.1	small_nucleolar_rna			None;(source:Araport11)
AT4G38160.4	protein_coding		Encodes a member of the mitochondrial transcription termination factor family. MTERF6 is localized to both the mitochondria and chloroplast. It is required for ILE tRNA maturation during chloroplast development. Loss of function of MTERF6 results in plants with defective chloroplasts or reduced rate of photosynthesis when MTERF6 expression is low.	Mitochondrial transcription termination factor family protein;(source:Araport11)
AT2G08535.1	long_noncoding_rna			None;(source:Araport11)
AT3G07305.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G45870;(source:Araport11)
AT2G07626.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G14750.2	protein_coding		Member of IQ67 (CaM binding) domain containing family.	IQ-domain 19;(source:Araport11)
AT2G09355.1	long_noncoding_rna			None;(source:Araport11)
AT4G12485.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G05590.3	protein_coding		Encodes cytoplasmic ribosomal protein L18.	ribosomal protein L18;(source:Araport11)
AT3G50790.2	protein_coding			esterase/lipase/thioesterase family protein;(source:Araport11)
AT3G53340.3	protein_coding			nuclear factor Y, subunit B10;(source:Araport11)
AT3G53340.2	protein_coding			nuclear factor Y, subunit B10;(source:Araport11)
AT3G53340.5	protein_coding			nuclear factor Y, subunit B10;(source:Araport11)
AT5G56900.3	protein_coding			CwfJ-like family protein / zinc finger (CCCH-type) family protein;(source:Araport11)
AT1G58520.6	protein_coding			GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT1G58520.7	protein_coding			GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT1G58520.4	protein_coding			GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT1G58520.5	protein_coding			GDSL-like lipase/acylhydrolase superfamily protein;(source:Araport11)
AT2G44970.3	protein_coding			alpha/beta-Hydrolases superfamily protein;(source:Araport11)
AT5G61270.3	protein_coding		Basic helix-loop-helix (bHLH) phytochrome interacting  factor. Interacts specifically with the far-red light?absorbing Pfr form of phyB through a conserved  domain called the active phyB binding motif. Upon light exposure, PIF7 rapidly migrates to intranuclear  speckles, where it colocalizes with phyB. Role as negative regulator of phyB-mediated seedling deetiolation.	phytochrome-interacting factor7;(source:Araport11)
AT1G08123.1	small_nucleolar_rna			None;(source:Araport11)
AT3G63430.2	protein_coding			zinc finger CCCH domain protein;(source:Araport11)
AT1G65310.2	protein_coding		Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC   2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.	xyloglucan endotransglucosylase/hydrolase 17;(source:Araport11)
AT2G42700.3	protein_coding		Member of MAG2 complex on the ER that is responsible for efficient transport of seed storage proteins, functions in protein transport between the ER and Golgi apparatus Sec1 domain, involved in the development of vegetative organs. Required for proper maturation of seed storage proteins.	vesicle docking protein;(source:Araport11)
AT2G22240.3	protein_coding		** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocalization experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	myo-inositol-1-phosphate synthase 2;(source:Araport11)
AT1G79103.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G23310.2	protein_coding		Encodes a cysteine-rich receptor-like protein kinase.	cysteine-rich RLK (RECEPTOR-like protein kinase) 23;(source:Araport11)
AT5G45500.4	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT5G45500.5	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT4G20430.3	protein_coding			Subtilase family protein;(source:Araport11)
AT5G45500.8	protein_coding			RNI-like superfamily protein;(source:Araport11)
AT5G67060.2	protein_coding		Encodes a bHLH transcription factor that is involved in transmitting tract and stigma development and acts as a local modulator of auxin and cytokinin responses to control gynoecium development. HEC1 affects auxin transport by acting as a transcriptional regulator of PIN1 and PIN3.	basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
AT3G54830.2	protein_coding		Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G39130.1). Note that a different cDNA sequence has been reported (see Community Comments).	Transmembrane amino acid transporter family protein;(source:Araport11)
AT4G06445.1	long_noncoding_rna			None;(source:Araport11)
AT5G45277.1	protein_coding			inhibitor of trypsin/hageman factor-like protein;(source:Araport11)
AT1G30130.3	protein_coding			DUF1365 family protein;(source:Araport11)
AT2G07910.1	miRNA_primary_transcript			microRNA ath-MIR5595a precursor;(source:Araport11)
AT1G23560.2	protein_coding			OBP32pep, putative (DUF220);(source:Araport11)
AT2G31300.2	protein_coding		putative ARP2/3 protein complex subunit p41	actin-related protein C1B;(source:Araport11)
AT4G06030.1	novel_transcribed_region			novel transcribed region; detected in carpel, flower, pollen;(source:Araport11)
AT4G05045.1	small_nucleolar_rna			None;(source:Araport11)
AT5G01490.2	protein_coding		Encodes a cation/proton antiporter, a member of low affinity calcium antiporter CAX2 family. Involved in root development under metal stress.	cation exchanger 4;(source:Araport11)
AT2G38840.2	protein_coding			Guanylate-binding family protein;(source:Araport11)
AT5G04105.1	small_nuclear_rna			U1;(source:Araport11)
AT1G07933.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G53708;(source:Araport11)
AT5G04995.1	miRNA_primary_transcript			microRNA ath-MIR854a precursor;(source:Araport11)
AT5G02810.2	protein_coding		PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels. Acts as transcriptional repressor of CCA1 and LHY.	pseudo-response regulator 7;(source:Araport11)
AT5G66080.2	protein_coding			Protein phosphatase 2C family protein;(source:Araport11)
AT5G07180.2	protein_coding		Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.  It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.	ERECTA-like 2;(source:Araport11)
AT5G07025.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G47730;(source:Araport11)
AT2G30690.2	protein_coding			lateral signaling target-like protein (Protein of unknown function, DUF593);(source:Araport11)
AT1G66460.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT3G56820.2	protein_coding			RmlC-type cupin;(source:Araport11)
AT2G05515.1	long_noncoding_rna			None;(source:Araport11)
AT1G07917.1	long_noncoding_rna			None;(source:Araport11)
AT4G26700.4	protein_coding		Encodes a member of the fimbrin family. Different members of the fimbrin/plastin family have diverged biochemically during evolution to generate either tight actin bundles or loose networks with distinct biochemical and biophysical properties. FIM4 generates both actin bundles and branched actin filaments whereas FIM5 only generates actin bundles.	fimbrin 1;(source:Araport11)
AT5G22500.2	protein_coding		Encodes a member of the eight-member gene family encoding alcohol-forming fatty acyl-CoA reductases (FARs) identified in Arabidopsis thaliana.  Three of the FARs, FAR1 (At5g22500), FAR4 (At3g44540) and FAR5 (At3g44550), are shown to generate the fatty alcohols found in root, seed coat, and wound-induced leaf tissue.	fatty acid reductase 1;(source:Araport11)
AT4G05855.1	miRNA_primary_transcript			microRNA ath-MIR5020b precursor;(source:Araport11)
AT1G16860.uORF1	uORF		Plasma membrane-localized proteins that negatively regulate cellulose synthesis by inhibiting the exocytosis of CESAs.	Derives_from AT1G16860;(source:Araport11)
AT1G74035.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G51340.4	protein_coding		Encodes a root citrate transporter which together with the root malate transporter ALMT1 are the primary mechanism of aluminum tolerance.	MATE efflux family protein;(source:Araport11)
AT1G09623.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G76360;(source:Araport11)
AT4G27490.3	protein_coding			3-5-exoribonuclease family protein;(source:Araport11)
AT4G27490.2	protein_coding			3-5-exoribonuclease family protein;(source:Araport11)
AT4G27490.5	protein_coding			3-5-exoribonuclease family protein;(source:Araport11)
AT4G27490.4	protein_coding			3-5-exoribonuclease family protein;(source:Araport11)
AT4G27490.7	protein_coding			3-5-exoribonuclease family protein;(source:Araport11)
AT4G27490.6	protein_coding			3-5-exoribonuclease family protein;(source:Araport11)
AT2G17050.2	protein_coding			disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT2G17050.3	protein_coding			disease resistance protein (TIR-NBS-LRR class);(source:Araport11)
AT1G05407.1	long_noncoding_rna			None;(source:Araport11)
AT1G18197.2	protein_coding			GCK domain protein;(source:Araport11)
AT2G09675.1	antisense_rna			Natural antisense transcript overlaps with AT2G45990;(source:Araport11)
AT4G22755.1	protein_coding		Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. In general, the expression of SMO1-3 is weaker than SMO1-1 and SMO1-2 suggesting that the three SMO1 genes play redundant as well as specific roles in embryo and root development with SMO1-3 playing a less  important role than SMO1-1 and SMO1-2.	methylsterol monooxygenase 1-3;(source:Araport11)
AT1G04087.1	long_noncoding_rna			None;(source:Araport11)
AT4G37608.2	protein_coding			hypothetical protein;(source:Araport11)
AT5G18245.7	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G18240;(source:Araport11)
AT5G18245.8	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G18240;(source:Araport11)
AT1G05570.4	protein_coding		Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.	callose synthase 1;(source:Araport11)
AT1G08010.3	protein_coding		Encodes a member of the GATA factor family of zinc finger transcription factors.	GATA transcription factor 11;(source:Araport11)
AT5G01955.1	long_noncoding_rna			None;(source:Araport11)
AT5G02075.1	long_noncoding_rna			None;(source:Araport11)
AT2G22730.5	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G22730.4	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G22730.7	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G22730.6	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G43430.4	protein_coding		Encodes the electron transfer flavoprotein ETF beta, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF alpha is At1g50940) in Arabidopsis.  Mutations of the ETF beta gene result in accelerated senescence and early death compared to wild-type during extended darkness.  Also involved in the catabolism of leucine and chlorophyll degradation pathway activated during darkness-induced carbohydrate deprivation.	electron transfer flavoprotein beta;(source:Araport11)
AT1G11870.6	protein_coding		Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	Seryl-tRNA synthetase;(source:Araport11)
AT2G22730.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G22730.2	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G24590.2	protein_coding		Encodes a signal peptidase Plsp1 (plastidic type I signal peptidase 1).  Required for thylakoid development. Functions in the maturation of the 75-kD component of the translocon at the outer envelope membrane of chloroplasts and oxygen evolving complex subunit 33 (OE33). Involved in the maturation of PsbO, plastocyanin and FtsH2/8.The mRNA is cell-to-cell mobile.	plastidic type i signal peptidase 1;(source:Araport11)
AT1G68862.4	protein_coding			transmembrane protein;(source:Araport11)
AT1G68862.2	protein_coding			transmembrane protein;(source:Araport11)
AT5G48655.5	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G48655.6	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT5G11750.2	protein_coding			Ribosomal protein L19 family protein;(source:Araport11)
AT3G08980.5	protein_coding			Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT3G08980.4	protein_coding			Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT3G08980.3	protein_coding			Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT3G08980.2	protein_coding			Peptidase S24/S26A/S26B/S26C family protein;(source:Araport11)
AT3G12540.2	protein_coding			ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547);(source:Araport11)
AT1G08070.2	protein_coding		Encodes a chloroplast RNA editing factor.	Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT5G03035.1	long_noncoding_rna			None;(source:Araport11)
AT1G77950.3	protein_coding			AGAMOUS-like 67;(source:Araport11)
AT3G06575.1	long_noncoding_rna			None;(source:Araport11)
AT4G09589.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G12520.3	protein_coding		Encodes a sulfate transporter that in induced under sulfate limitation.	sulfate transporter 4;(source:Araport11)
AT3G13240.2	protein_coding			hypothetical protein;(source:Araport11)
AT3G05310.2	protein_coding		Encodes a protein with similarity to MIRO GTPases.	MIRO-related GTP-ase 3;(source:Araport11)
AT5G58140.5	protein_coding		Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation.  Localized to the Golgi apparatus under the induction of blue light.The mRNA is cell-to-cell mobile.	phototropin 2;(source:Araport11)
AT5G58140.7	protein_coding		Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation.  Localized to the Golgi apparatus under the induction of blue light.The mRNA is cell-to-cell mobile.	phototropin 2;(source:Araport11)
AT3G08990.3	protein_coding			Yippee family putative zinc-binding protein;(source:Araport11)
AT5G01195.1	small_nucleolar_rna			None;(source:Araport11)
AT5G25520.3	protein_coding			SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT2G03823.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G25520.6	protein_coding			SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT1G06473.1	long_noncoding_rna			None;(source:Araport11)
AT5G25520.5	protein_coding			SPOC domain / Transcription elongation factor S-II protein;(source:Araport11)
AT1G04097.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G02305;(source:Araport11)
AT1G20910.2	protein_coding			ARID/BRIGHT DNA-binding domain-containing protein;(source:Araport11)
AT5G09385.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT5G65480;(source:Araport11)
AT2G16380.3	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT5G52750.2	protein_coding			Heavy metal transport/detoxification superfamily protein;(source:Araport11)
AT4G11560.2	protein_coding			bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
AT3G09550.3	protein_coding			Ankyrin repeat family protein;(source:Araport11)
AT4G05860.1	miRNA_primary_transcript			microRNA ath-MIR5020a precursor;(source:Araport11)
AT3G05785.1	long_noncoding_rna			None;(source:Araport11)
AT4G11500.2	pseudogene			pseudogene of cysteine-rich RLK (RECEPTOR-like protein kinase) 34;(source:Araport11)
AT1G08563.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT1G62790;(source:Araport11)
AT2G37930.3	protein_coding			hypothetical protein (DUF3527);(source:Araport11)
AT2G37930.2	protein_coding			hypothetical protein (DUF3527);(source:Araport11)
AT2G37930.4	protein_coding			hypothetical protein (DUF3527);(source:Araport11)
AT2G20080.3	protein_coding			hypothetical protein;(source:Araport11)
AT1G75945.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G67480.uORF1-1	uORF			Derives_from AT1G67480;(source:Araport11)
AT3G58930.4	protein_coding			F-box/RNI-like superfamily protein;(source:Araport11)
AT1G07273.1	long_noncoding_rna			None;(source:Araport11)
AT4G05055.1	small_nucleolar_rna			None;(source:Araport11)
AT5G44480.2	protein_coding		mutant has Altered lateral root; UDP Glucose EpimeraseThe mRNA is cell-to-cell mobile.	NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
AT5G18937.1	protein_coding			transmembrane protein;(source:Araport11)
AT2G38995.3	protein_coding			O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT3G21240.3	protein_coding		encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order:  p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.	4-coumarate:CoA ligase 2;(source:Araport11)
AT2G38995.4	protein_coding			O-acyltransferase (WSD1-like) family protein;(source:Araport11)
AT5G17305.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G61490.4	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT3G61490.5	protein_coding			Pectin lyase-like superfamily protein;(source:Araport11)
AT4G24480.2	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT4G16990.9	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT2G08105.1	long_noncoding_rna			None;(source:Araport11)
AT4G15200.4	protein_coding		Actin nucleation factor that directs the formation of actin cables in pollen tubes. Involved in cytoplasmic streaming and polarized growth in pollen tubes.	formin 3;(source:Araport11)
AT5G18760.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G45100.3	protein_coding		encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway.	UDP-Glycosyltransferase superfamily protein;(source:Araport11)
AT4G16990.6	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT4G16990.7	protein_coding			disease resistance protein (TIR-NBS class);(source:Araport11)
AT1G08867.1	long_noncoding_rna			None;(source:Araport11)
AT1G58643.2	protein_coding			Inositol-pentakisphosphate 2-kinase family protein;(source:Araport11)
AT2G07642.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G00745.1	long_noncoding_rna			None;(source:Araport11)
AT2G08125.1	long_noncoding_rna			None;(source:Araport11)
AT1G53090.4	protein_coding		Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4).  SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain.  SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	SPA1-related 4;(source:Araport11)
AT3G03065.1	other_rna			None;(source:Araport11)
AT3G07385.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT3G46300;(source:Araport11)
AT3G60890.3	protein_coding			binding protein;(source:Araport11)
AT2G19200.2	pseudogene			pseudogene of hypothetical protein (DUF626);(source:Araport11)
AT1G60670.3	protein_coding			hypothetical protein (DUF3755);(source:Araport11)
AT5G22290.2	protein_coding		Encodes ANAC089, a membrane-tethered transcription factor that negatively regulates floral initiation. Also controls ER-stress-induced programmed cell death.	NAC domain containing protein 89;(source:Araport11)
AT5G05305.1	novel_transcribed_region			novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial, shoot apical meristem;(source:Araport11)
AT2G16990.6	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT3G29010.4	protein_coding			Biotin/lipoate A/B protein ligase family;(source:Araport11)
AT2G08780.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G36220;(source:Araport11)
AT1G48210.4	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G07590.3	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT5G07590.2	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT3G27930.3	protein_coding		Encodes a novel plant-specific beta-barrel protein that likely plays a role in the transport of metabolites and in leaf senescence.	beta-galactosidase;(source:Araport11)
AT2G04125.1	antisense_long_noncoding_rna			Natural antisense transcript overlaps with AT2G01860;(source:Araport11)
AT1G48210.7	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G07590.4	protein_coding			Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
AT2G00400.2	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G16990.5	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G09415.1	long_noncoding_rna			None;(source:Araport11)
AT2G42410.2	protein_coding		Encodes a zinc finger protein ZFP11.  Overexpression of ZFP11 causes mortality and a deformed phenotype.	zinc finger protein 11;(source:Araport11)
AT5G04695.1	long_noncoding_rna			None;(source:Araport11)
AT2G01760.3	protein_coding		member of Response Regulator: B- Type	response regulator 14;(source:Araport11)
AT2G16990.3	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G08575.1	other_rna			None;(source:Araport11)
AT5G06440.5	protein_coding			polyketide cyclase/dehydrase/lipid transport superfamily protein;(source:Araport11)
AT1G02650.2	protein_coding			Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
AT2G22920.4	protein_coding			serine carboxypeptidase-like 12;(source:Araport11)
AT5G24860.2	protein_coding		encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice.	flowering promoting factor 1;(source:Araport11)
AT5G24860.3	protein_coding		encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice.	flowering promoting factor 1;(source:Araport11)
AT5G46870.2	protein_coding		ACD11 binding partner, negatively regulates ROS-mediated defense response.	RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
AT3G07855.1	long_noncoding_rna			None;(source:Araport11)
AT4G37580.2	protein_coding		involved in apical hook development. putative N-acetyltransferase	Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
AT1G54040.3	protein_coding		Epithiospecifier protein, interacts with WRKY53. Involved in pathogen resistance and leaf senescence.	epithiospecifier protein;(source:Araport11)
AT3G19870.2	protein_coding			AP-5 complex subunit beta-like protein;(source:Araport11)
AT3G07165.1	long_noncoding_rna			None;(source:Araport11)
AT5G02710.3	protein_coding			zinc/iron-chelating domain protein;(source:Araport11)
AT2G18420.2	protein_coding		Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein	Gibberellin-regulated family protein;(source:Araport11)
AT2G30385.1	protein_coding			F-box/LRR protein;(source:Araport11)
AT3G63420.3	protein_coding		heterotrimeric G protein gamma-subunit (AGG1) mRNA,	Ggamma-subunit 1;(source:Araport11)
AT1G04547.1	small_nucleolar_rna			None;(source:Araport11)
AT5G53150.2	protein_coding			DnaJ heat shock amino-terminal domain protein;(source:Araport11)
AT5G04575.1	long_noncoding_rna			None;(source:Araport11)
AT1G03580.2	pseudogene			pseudogene of MATH domain/coiled-coil protein;(source:Araport11)
AT4G32535.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G53150.4	protein_coding			DnaJ heat shock amino-terminal domain protein;(source:Araport11)
AT5G53150.5	protein_coding			DnaJ heat shock amino-terminal domain protein;(source:Araport11)
AT2G08200.1	long_noncoding_rna			None;(source:Araport11)
AT3G59620.2	protein_coding			Mannose-binding lectin superfamily protein;(source:Araport11)
AT1G05103.1	long_noncoding_rna			None;(source:Araport11)
AT3G00310.1	novel_transcribed_region			novel transcribed region;(source:Araport11)
AT2G09250.1	long_noncoding_rna			None;(source:Araport11)
AT4G01800.3	protein_coding		Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression.	Albino or Glassy Yellow 1;(source:Araport11)
AT3G61670.2	protein_coding			extra-large G-like protein, putative (DUF3133);(source:Araport11)
AT2G14560.4	protein_coding		Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica.  LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.The mRNA is cell-to-cell mobile.	LURP-one-like protein (DUF567);(source:Araport11)
AT1G09423.1	long_noncoding_rna			None;(source:Araport11)
AT3G04940.2	protein_coding		Encodes cysteine synthase CysD1.	cysteine synthase D1;(source:Araport11)
AT2G17290.2	protein_coding		Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family.  CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites.  CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses.  CPK6 is expressed in both guard cells and mesophyll cells.  Functions in guard cell ion channel regulation.   ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells.  Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles.  The protein kinase CPK6 is shown in biochemical assays to be directly activated by elevations in calcium concentrations in the physiological range (Laanements et al., 2013 PlantPhys.; PMID: 23766366). These data correlate with the in vivo function of CPK6 in Ca2+ and ABA activation of S-type anion channels (Mori et al., 2006 PLoS Biol.;  PMID: 17032064) and the ability of CPK6 to mediate ABA activation of SLAC1 (Brandt et al., 2012 PNAS; PMID: 22689970).The mRNA is cell-to-cell mobile.	Calcium-dependent protein kinase family protein;(source:Araport11)
AT2G21300.5	protein_coding			ATP binding microtubule motor family protein;(source:Araport11)
AT4G25420.2	protein_coding		Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light.	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
AT1G17970.2	protein_coding			RING/U-box superfamily protein;(source:Araport11)
AT3G26512.1	protein_coding			hypothetical protein;(source:Araport11)
AT3G46980.5	protein_coding		Encodes an inorganic phosphate transporter (PHT4;3).	phosphate transporter 4;(source:Araport11)
AT3G46980.4	protein_coding		Encodes an inorganic phosphate transporter (PHT4;3).	phosphate transporter 4;(source:Araport11)
AT1G05960.4	protein_coding			ARM repeat superfamily protein;(source:Araport11)
AT3G30730.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G07025.1	long_noncoding_rna			None;(source:Araport11)
AT1G26190.2	protein_coding		TTM2 is a triphosphate tunnel metalloenzyme that displays pyrophosphatase activity.It contains both a uridine kinase (UK) domain and CYTH domain. TTM2 is involved in negative regulation defense response to pathogens (PMID:28733390).	Phosphoribulokinase / Uridine kinase family;(source:Araport11)
AT1G26190.3	protein_coding		TTM2 is a triphosphate tunnel metalloenzyme that displays pyrophosphatase activity.It contains both a uridine kinase (UK) domain and CYTH domain. TTM2 is involved in negative regulation defense response to pathogens (PMID:28733390).	Phosphoribulokinase / Uridine kinase family;(source:Araport11)
AT5G44566.1	protein_coding			hypothetical protein;(source:Araport11)
AT1G48270.2	protein_coding		encodes a protein similar to G-coupled receptor with 7 transmembrane regions. Overexpression studies suggest this gene is involved in dormancy and flowering. Reduction of expression results in decreased sensitivity to cytokinin.	G-protein-coupled receptor 1;(source:Araport11)
AT1G26190.4	protein_coding		TTM2 is a triphosphate tunnel metalloenzyme that displays pyrophosphatase activity.It contains both a uridine kinase (UK) domain and CYTH domain. TTM2 is involved in negative regulation defense response to pathogens (PMID:28733390).	Phosphoribulokinase / Uridine kinase family;(source:Araport11)
AT1G26190.5	protein_coding		TTM2 is a triphosphate tunnel metalloenzyme that displays pyrophosphatase activity.It contains both a uridine kinase (UK) domain and CYTH domain. TTM2 is involved in negative regulation defense response to pathogens (PMID:28733390).	Phosphoribulokinase / Uridine kinase family;(source:Araport11)
AT2G08820.1	long_noncoding_rna			None;(source:Araport11)
AT4G33800.2	protein_coding			hypothetical protein;(source:Araport11)
AT4G21780.3	protein_coding			hypothetical protein;(source:Araport11)
AT5G09465.1	long_noncoding_rna			None;(source:Araport11)
AT3G05310.3	protein_coding		Encodes a protein with similarity to MIRO GTPases.	MIRO-related GTP-ase 3;(source:Araport11)
AT5G40315.1	protein_coding			hypothetical protein;(source:Araport11)
AT5G03355.1	protein_coding			cysteine/histidine-rich C1 domain protein;(source:Araport11)
AT4G32360.7	protein_coding			Pyridine nucleotide-disulfide oxidoreductase family protein;(source:Araport11)
AT4G15200.3	protein_coding		Actin nucleation factor that directs the formation of actin cables in pollen tubes. Involved in cytoplasmic streaming and polarized growth in pollen tubes.	formin 3;(source:Araport11)
AT4G07845.1	long_noncoding_rna			None;(source:Araport11)
AT2G16990.7	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G16990.4	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT5G56160.3	protein_coding			Sec14p-like phosphatidylinositol transfer family protein;(source:Araport11)
AT1G60620.2	protein_coding			RNA polymerase I subunit 43;(source:Araport11)
AT2G42410.3	protein_coding		Encodes a zinc finger protein ZFP11.  Overexpression of ZFP11 causes mortality and a deformed phenotype.	zinc finger protein 11;(source:Araport11)
AT1G48210.3	protein_coding			Protein kinase superfamily protein;(source:Araport11)
AT5G22796.1	protein_coding			hypothetical protein;(source:Araport11)
AT4G09755.1	long_noncoding_rna			None;(source:Araport11)
AT1G53160.3	protein_coding		Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors.  Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change.  Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3 PrimeUTR.	squamosa promoter binding protein-like 4;(source:Araport11)
AT2G16990.8	protein_coding			Major facilitator superfamily protein;(source:Araport11)
AT2G25610.2	protein_coding			ATPase, F0/V0 complex, subunit C protein;(source:Araport11)
AT2G43780.3	protein_coding			cytochrome oxidase assembly protein;(source:Araport11)
AT5G15240.3	protein_coding			Transmembrane amino acid transporter family protein;(source:Araport11)
AT3G12977.2	protein_coding		NAC transcription regulator.  Regulates endosperm cell expansion during germination.	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein;(source:Araport11)
AT2G43780.4	protein_coding			cytochrome oxidase assembly protein;(source:Araport11)
AT2G14560.3	protein_coding		Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica.  LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.The mRNA is cell-to-cell mobile.	LURP-one-like protein (DUF567);(source:Araport11)
AT4G32900.4	protein_coding			Peptidyl-tRNA hydrolase II (PTH2) family protein;(source:Araport11)
AT4G05365.1	other_rna			None;(source:Araport11)
AT4G32900.3	protein_coding			Peptidyl-tRNA hydrolase II (PTH2) family protein;(source:Araport11)
CG02	unknown			
ZZM2	unknown			
ATMG09750.1	pseudogene			None;(Source: Araport 11)
AT2G10045.1	pseudogene			None;(Source: Araport 11)
AT2G10045.2	pseudogene			None;(Source: Araport 11)
ATMG09560.1	pseudogene			None;(Source: Araport 11)
AT1G44570.1	pseudogene			None;(Source: Araport 11)
AT1G44500.1	pseudogene			None;(Source: Araport 11)
AT1G57900.1	pseudogene			None;(Source: Araport 11)
ATMG09720.1	pseudogene			None;(Source: Araport 11)
ATMG09390.1	pseudogene			None;(Source: Araport 11)
AT4G03615.1	novel_transcribed_region			None;(Source: Araport 11)
AT5G07235.1	novel_transcribed_region			novel transcribed region; detected in leaf, light-grown seedling; (Source: Araport 11)
ATMG09440.1	pseudogene			None (Source: Araport 11)
AT1G44370.1	pseudogene			None (Source: Araport 11)
AT1G44580.1	pseudogene			None (Source: Araport 11)
ATCG09900.1	pseudogene			None (Source: Araport 11)
ATCG09900.2	pseudogene			None (Source: Araport 11)
ATMG09510.1	pseudogene			None (Source: Araport 11)
ATMG09830.1	pseudogene			None (Source: Araport 11)
ATMG09520.1	pseudogene			None (Source: Araport 11)
ATMG09790.1	pseudogene			None (Source: Araport 11)
ATMG09800.1	pseudogene			None (Source: Araport 11)
AT1G56190-Cvi	unknown		Encodes an evolutionarily conserved nucleus-encoded chloroplast phosphoglycerate kinase with a key role in cell metabolism.  The Cvi variant of this gene (single amino acid substitution wrt Ler) renders A. thaliana resistant to infection by Watermelon mosaic virus.	
SAMS2	unknown			
AG1	unknown			
AtPYL1	unknown			
FTL3	unknown			
MUT9	unknown			
DUF179	unknown		AT3G19780	
SP81	unknown			
TBX1	unknown			
ORB1	unknown		alelle of GLUTAMATE SYNTHASE 1 (GLU1) enzyme, also known as FERREDOXIN-DEPENDENT GLUTAMINE OXOGLUTARATE AMINOTRANSFERASE 1 (Fd-GOGAT1)	
COLDAIR	antisense_long_noncoding_rna		A long noncoding RNA that is necessary for the repression of a floral repressor FLOWERING LOCUS C (FLC) during vernalization. Its chromosomal location is on chr5: 3176839--3177936 (complement). It is located within the FLC locus and transcribed in the same direction as FLC starting from the VRE element (RNA central ID URS000075325B). The RNA is capped but generally not polyadenylated. Expression is increased by cold treatment and knockdown mutants are delayed in flowering without vernalization . COLDAIR interacts with components of the PRC2 complex and may function to recruit the PRC2 to FLC.	
COLDWRAP	antisense_long_noncoding_rna		chr5: 3179258--3179673 (complement)	
LIKE67	unknown			
REIN7	unknown			
POP085	unknown			
AtCDD1	unknown			
NBS13	unknown			
SDG713	unknown			
CH267	unknown			
MRF4	unknown			
ZIP53	unknown			
ARN6	unknown		cucumber qtl	
AtCDKB2	unknown		AtCDKB2;1	
AtPP16	unknown			
EZL1	unknown			
LYK12	unknown			
SLC25	unknown			
AST1	unknown			
AtGALS1	unknown			
AtPOD31	unknown			
AtPOD33	unknown			
AtPOD34	unknown			
AtPOD71	unknown			
AtRFC3	unknown			
AtRFC4	unknown			
CIPP1	unknown			
EXPO1	unknown			
PMEI13	unknown			
YB22	unknown			
RLM198	unknown			
CASC1	unknown			
SAHY9	unknown			
AtALT1	unknown			
AtLML1	unknown			
LML1	unknown			
LMM5	unknown			
MKB3	unknown			
RRC101	unknown			
RRS5	unknown			
SPL33	unknown			
AtNOP10	unknown			
SBP56	unknown			
SWC4	unknown			
HMGA1	unknown			
MOS001	unknown			
MOS004	unknown			
YT521	unknown			
AtPLT1	unknown			
BAR11	unknown			
JIM16	unknown			
MK6	unknown			
VQ10	unknown			
AtCIPK9	unknown			
AtVAL1	unknown			
ERCC4	unknown			
NAB1	unknown			
RBP2	unknown			
RBP3	unknown			
RBP5	unknown			
RMV2	unknown			
TEX11	unknown			
AU9	unknown			
KIRA1	unknown			
LS1	unknown			
SCFP0	unknown			
AtTAG1	unknown			
FKBP15	unknown		two isoforms  AT3G25220 (FKBP15-1) / AT5G48580 (FKBP15-2)	
TS3	unknown			
AtLEA4	unknown			
GV101	unknown			
LFR1	unknown			
MTP6	unknown			
MTP7	unknown			
XZ16	unknown			
AtBAP1	unknown			
AtRFC5	unknown			
AtKLCR1	unknown			
DDX6	unknown			
SC124	unknown			
SYCP2	unknown			
UFGT2	unknown			
DLI12	unknown			
ULP2	unknown			
MED7	unknown			
STD1	unknown			
ZF4	unknown			
ZS9	unknown			
CMM3	unknown			
ECL2	unknown			
PSRK2	unknown			
RNA62	unknown			
AtIAR3	unknown			
AtILL5	unknown			
AtGLX2	unknown			
ISR42	unknown			
AtPR3	unknown			
PM1	unknown			
RNA319	unknown			
AtJAZ2	unknown			
AtSIF1	unknown			
AtSIF4	unknown			
CDKF4	unknown			
GP67	unknown			
AtHSA32	unknown			
CDN1	unknown			
MST3	unknown			
OCD1	unknown			
PD6	unknown			
PD9	unknown			
CO17	unknown			
GA733	unknown			
BW69	unknown			
JW81	unknown			
DP11	unknown			
DP7	unknown			
AtGS1	unknown			
BR6	unknown			
NRS1	unknown		DNA cis element	
TMEM63	unknown			
UMCV2	unknown			
WRI2	unknown			
At1g47401.1	novel_transcribed_region		Member of a family of peptides involved in iron transport. Identified based on sequence homology with RNAseq support. Coordinates on TAIR9 assembly are Chr1:17,387,997-17,388,188 . Peptide sequence is :MFSLSEFVFRIYDHISESCVGGDTTSYDKEIKYRQAAYAEIGDQNEDDIYDYAPAAGVHPSYE	
RFCP1	unknown			
UQ202	unknown			
WCS365	unknown			
EINI4	unknown			
AtFUS3	unknown			
MIRA4	unknown			
UCL8	unknown			
VB1	unknown			
RSLH1	unknown			
AT895	unknown			
ASRF1	unknown			
AtOMS34	unknown			
HSF21	unknown			
HUW468	unknown			
IF35	unknown			
NP24	unknown			
TERF1	unknown			
WRKY5	unknown			
DDX1	unknown			
DDX17	unknown			
JB6	unknown			
PH207	unknown			
SAB18	unknown			
AtELO4	unknown			
HAM91	unknown			
AT5G65075.1	long_noncoding_rna		NAT-lncRNA produced from the MADS AFFECTING FLOWERING4 (MAF4) locus. Induced by cold and indispensable for the activation of MAF4 transcription and suppression of precocious flowering. Activates MAF4 by interacting with WDR5a, one core component of the COMPASS-like complexes, and recruiting WDR5a to MAF4 to enhance histone 3 lysine 4 trimethylation (H3K4me3).	
PT7	unknown			
JF1	unknown			
BS01	unknown			
CML288	unknown			
CURS2	unknown			
MADS32	unknown			
ERF67	unknown			
ITS5	unknown			
LAC18	unknown			
SAPK4	unknown			
ITS4	unknown			
PG4	unknown			
ROL17	unknown			
SS30	unknown			
ST118	unknown			
AtACBP270	unknown			
FTL9	unknown			
AtMUM1	unknown			
AtSGR1	unknown			
BAM10	unknown			
BR007	unknown			
GRA78	unknown			
SC283	unknown			
FDA10	protein_coding		AGI identifier needs to be assigned, currently exon 4 and 5 in splice variants other than 2 in At2g16365 (which is gene PCH1)	AGI identifier needs to be assigned, currently exon 4 and 5 in splice variants other than 2 in At2g16365 (which is gene PCH1)
STTM171	unknown			
STTM390	unknown			
ZT1	unknown			
ZT6	unknown			
AtOTS1	unknown			
EFL4	unknown			
EPFL1	unknown			
RZS1	unknown			
AtBKI1	unknown			
DPL971	unknown			
DPL972	unknown			
PP333	unknown			
CDPK3	unknown			
COC1	unknown			
CS157	unknown			
GAST9	unknown			
JIM11	unknown			
JIM20	unknown			
KO2	unknown			
WP1	unknown			
FDL06	unknown			
FDL12	unknown			
FDL19	unknown			
OLEA9	unknown			
HH3	unknown			
LRR2	unknown			
PMB05	unknown			
AtTT19	unknown			
CCR5	unknown			
CPD33	unknown			
MED30	unknown			
TM43	unknown			
GLE4	unknown			
NCA2	unknown			
STV11	unknown			
YB525	unknown			
CO46	unknown			
PM389	unknown			
YT512	unknown			
ZNP1	unknown			
AtPUB3	unknown			
AtSDP1	unknown			
EGF2	unknown			
FBR41	unknown			
RET9	unknown			
SOM592	unknown			
AtANS2	unknown			
AtMAF5	unknown			
AtPOD22	unknown			
AtPOD23	unknown			
BL10	unknown			
BL100	unknown			
BL25	unknown			
BL5	unknown			
BL50	unknown			
PAIR1	unknown			
SMRE4	unknown			
ARNT3	unknown			
AtNFYA5	unknown			
FB2	unknown			
FB4	unknown			
TPL1	unknown			
AH7	unknown			
AH8	unknown			
AtAOC2	unknown			
AtAPC8	unknown			
AtCGA1	unknown			
AtELF3	unknown			
CHR156	unknown			
CRI36	unknown			
DEK5	unknown			
LRR3	unknown			
PM19	unknown			
SMK6	unknown			
SSG4	unknown			
UBC09	unknown			
LY4	unknown			
XPO5	unknown			
AtPYL8	unknown			
AtSIP3	unknown			
AtSIP4	unknown			
DH100	unknown			
RLL1	unknown			
RLL2	unknown			
RLL4	unknown			
STS2	unknown			
AT1G77763.1	long_noncoding_rna		T5120 is a long noncoding RNA and the sequence provided by the submitter is the cDNA sequence from Illumina. The localization of T5120 is at Chr1 from 29242426 to 29243102 between the genes of At1g77760 and At1g77765.	Chr1  29242426-29243102  TTAGGGAAACAACGACGACCCTTTCGTGACCCTTTGAGCCACTTTCACTACATTTACATTTATTCATTTCTCCTTACAATATACATATTCTCCTTTTTAACATGTACTATGCATTCACAAACCATGTCGTACTATATAAAAATATACATTGACGACACAAATCAAATAAGTATATAGATTTTAGTATGTATTTATCTTGAAATATATGGAAAACAACCATGTCGTACTGCACAAAATAATTTGATGGAAACAAAgtaagtatgtaaattttgtacgtgtactgtatcttgagattaattagtctctctactaatttgtttttgtttttatcgtatccaatagTTATCATACATACAAAGCAATGGCCAGAATATCCCAAACATTAGCTCACCGTCAATTTAAACACAATTATCCTGGAGATAATCATAATTCTAATCCCTATTGTGGTGTTTTAAAATTCTCATGTTGATTTTGTCTAAAAGCAGCACTTTTGCTATCATATAAACATATTTAAGCAGCACTTTTCATTTCATATAACGAAATAATGAACCACTTGACACATGCGGCTATATTTTTTTAACCATATGATATTTGCCATATTGGTATATAGTTGGACACTTTTACTGTTTATAGTCAAAGTCAGTGTGGTACTCAAAATATGGCACTTACAAAAGTTG
CAO1	unknown		rice	
MSB8	unknown			
MNV1	unknown			
NAC31	unknown			
ANK23	unknown			
DH4	unknown			
DHGA5	unknown			
RS105	unknown			
GTOM1	unknown			
OAGL6	unknown			
RAN07	unknown			
SN14	unknown			
ZYD6	unknown			
AT1G58160-Bay-0	protein_coding		Encodes a jacalin type lectin involved in viral resistance. The allele in the Col-0 reference genome is not functional(PMID:22307853) but a functional allele was cloned in the Bay-0 ecotype.JAX1 inhibits viral RNA synthesis but not the translation of the viral RNA-dependent RNA polymerase.	
AtSRR1	unknown			
GJ11	unknown			
WDR33	unknown			
BZU2	unknown			
DEST1	unknown			
MS4	unknown			
PAN2	unknown			
EPYC1	unknown			
HMGL35	unknown			
HMGL46	unknown			
HMGL51	unknown			
TP35	unknown			
AtMLLR1	unknown			
AtMLLR2	unknown			
AtMLLR3	unknown			
BW507	unknown			
BW508	unknown			
BXO4	unknown			
CYR23	unknown			
CYR31	unknown			
KAO3	unknown			
MYB152	unknown			
PDCD4	unknown			
SUL2	unknown			
WZY3	unknown			
CCRI12	unknown			
CCRI24	unknown			
CSSL18	unknown			
GPN1	unknown			
IMPA4	unknown			
KDML105	unknown			
MR5	unknown			
NET4	unknown			
RPAP1	unknown			
SFR8	unknown			
UMP1	unknown			
